CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009921	Frankia sp. EAN1pec, complete genome	8 crisprs	WYL,cas3,csa3,c2c9_V-U4,cas4,RT,csx19,csm3gr7,cas6,cas8b2,cas7,cas5,cas2,casR,DEDDh	1	50	14	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009921_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009921_1

607252-607550

Orphan

Consensus_repeat	Method
CAGCCAGGCGCGGGTCAGGTTCGCTCCGC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NC_009921_1

>merge|NC_009921|1|607252-607550|CRISPRCasFinder
CAGCCAGGCGCGGGTCAGGTCCGCCTCGGTCAGCCAGGCGCGGGTCAGGTTCGCTCCGCCTAGCGATGCGCCCGTGAGATCCGCGCCGTCCAGCCAGGCGCGGGTCAGGTCCGCTCCGCTTAGCGATGCACCGGTGAGATCCGCTCCGCTTAGCCGGGCGCGGGTCAGGTTCGCTCCGCCCAACCAGGTATAGCTGAGGTTGGCCTCGTTCAGCGAGGCGCCCGTGAGATCCGTGCCGCCCAGCCGGCTGGCAGTGAGGTCCGCCCGACCCAGATGGGCGCGGCTGAGGTCCGCTCCGG

>NC_009921|1|1|607252-607550|CRISPRCasFinder
CAGCCAGGCGCGGGTCAGGTCCGCCTCGG	TCAGCCAGGCGCGGGTCAGGTTCGCTCCGCCTAGCGATGCGCCCGTGAGATCCGCGCCGTC
CAGCCAGGCGCGGGTCAGGTCCGCTCCGC	TTAGCGATGCACCGGTGAGATCCGCTCCGCT
TAGCCGGGCGCGGGTCAGGTTCGCTCCGC	CCAACCAGGTATAGCTGAGGTTGGCCTCGTT
CAGCGAGGCGCCCGTGAGATCCGTGCCGC	CCAGCCGGCTGGCAGTGAGGTCCGCCCGACC
CAGATGGGCGCGGCTGAGGTCCGCTCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009921.1\|WP_020458175.1\|605916_606735_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NC_009921.1\|WP_020458185.1\|618950_619637_-\|DUF2306-domain-containing-protein	unknown	unknown	gnl\|CDD\|370803
NC_009921.1\|WP_020458170.1\|600406_601156_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NC_009921.1\|WP_020458166.1\|597382_597967_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_009921.1\|WP_041253634.1\|621200_621869_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_009921.1\|WP_041253631.1\|601142_602132_+\|TIGR03621-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|200301
NC_009921.1\|WP_157472288.1\|623061_623922_+\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|252734
NC_009921.1\|WP_083788149.1\|609227_610772_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_009921.1\|WP_020458182.1\|614950_615556_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_009921.1\|WP_020458190.1\|624518_624797_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020458183.1\|615598_618124_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|223650
NC_009921.1\|WP_157472286.1\|619938_621204_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_009921.1\|WP_020458173.1\|603226_603784_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379275
NC_009921.1\|WP_020458174.1\|604271_605528_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380564
NC_009921.1\|WP_020458172.1\|602209_603124_+\|TIGR03564-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274651
NC_009921.1\|WP_020458168.1\|598588_599428_+\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|367137
NC_009921.1\|WP_020458184.1\|618120_618954_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_009921.1\|WP_020458169.1\|599465_600350_+\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|369882
NC_009921.1\|WP_020458167.1\|598035_598254_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020458179.1\|612580_612922_-\|Lsr2-family-protein	unknown	unknown	gnl\|CDD\|378714

Protein	Function_ID	Function_description	E-value
NC_009921.1\|WP_020458175.1\|605916_606735_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.04703e-48
NC_009921.1\|WP_020458185.1\|618950_619637_-\|DUF2306-domain-containing-protein	gnl\|CDD\|370803	pfam10067, DUF2306, Predicted membrane protein (DUF2306). Members of this family of hypothetical bacterial proteins have no known function.	8.02788e-42
NC_009921.1\|WP_020458170.1\|600406_601156_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.26738e-76
NC_009921.1\|WP_020458179.1\|612580_612922_-\|Lsr2-family-protein	gnl\|CDD\|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	3.63303e-49
NC_009921.1\|WP_041253634.1\|621200_621869_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.66869e-69
NC_009921.1\|WP_041253631.1\|601142_602132_+\|TIGR03621-family-F420-dependent-LLM-class-oxidoreductase	gnl\|CDD\|200301	TIGR03621, F420_MSMEG_2516, probable F420-dependent oxidoreductase, MSMEG_2516 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_2516 from Mycobacterium smegmatis. [Unknown function, Enzymes of unknown specificity].	4.47186e-83
NC_009921.1\|WP_157472288.1\|623061_623922_+\|SAM-dependent-methyltransferase	gnl\|CDD\|252734	pfam04672, Methyltransf_19, S-adenosyl methyltransferase. This family contains a SAM (S-adenosyl methyltransferase) domain, with a central beta sheet with 3 alpha-helices on both sides. Crystal packing analysis of the structure Structure 3giw suggests that a monomer is the solution state oligomeric form. An unidentified ligand (UNL, cyan) was found at the putative active site surrounded by the residues His57, His170, Phe171, Tyr216 and Met22. The UNL is likely to be a phenylalanine or phenylalanine-like molecule. (details derived from TOPSAN).	7.34636e-121
NC_009921.1\|WP_083788149.1\|609227_610772_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	7.60825e-61
NC_009921.1\|WP_020458182.1\|614950_615556_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	8.71394e-59
NC_009921.1\|WP_020458183.1\|615598_618124_-\|FtsX-like-permease-family-protein	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	6.35998e-15
NC_009921.1\|WP_157472286.1\|619938_621204_+\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.92104e-37
NC_009921.1\|WP_020458173.1\|603226_603784_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379275	pfam13577, SnoaL_4, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	1.24159e-17
NC_009921.1\|WP_020458174.1\|604271_605528_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380564	cd06341, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.	1.82936e-110
NC_009921.1\|WP_020458172.1\|602209_603124_+\|TIGR03564-family-F420-dependent-LLM-class-oxidoreductase	gnl\|CDD\|274651	TIGR03564, F420_MSMEG_4879, F420-dependent oxidoreductase, MSMEG_4879 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_4879 from Mycobacterium smegmatis. [Unknown function, Enzymes of unknown specificity].	2.06641e-87
NC_009921.1\|WP_020458184.1\|618120_618954_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	9.12243e-109
NC_009921.1\|WP_020458169.1\|599465_600350_+\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	1.65115e-72
NC_009921.1\|WP_020458168.1\|598588_599428_+\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|367137	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. This family consists of taurine catabolism dioxygenases of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent taurine dioxygenase. This enzyme catalyzes the oxygenolytic release of sulfite from taurine. TfdA from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.	7.82163e-60
NC_009921.1\|WP_020458166.1\|597382_597967_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.14469e-10

>NC_009921.1|WP_020458175.1|605916_606735_-|response-regulator
MPTSYVCRPHPTGARYAPKSQIDTLVVSGDSSYAESIRMNIEKTSGFAVGAVALTGGQSIRLLTHNSYDLVILDLDLSDMAGLEVCRSIRSRSAGPDIIAVTADRELATVRVAVSYRVIHYLVKPFDFADFRARLHRYALFRQQVADNVTGQIGQREIDSALAMLSPDPTAQPKAPKGLTTVTLDAIVTCLRAASTPVSSDDVARTLGISRVTARRYLERLTQERLAIRRQRYGRPGRPEHLYCWRAGNQGPETVHMGQGARRDPENLPYRS
>NC_009921.1|WP_020458174.1|604271_605528_-|ABC-transporter-substrate-binding-protein
MIFGRLSIRWIVSVAIVVVVAGCTLPGSGKERPVAVGCDSPGVTSDQVKLGLVFSDSGIGSTALSSARSGVDARINLANAQGGIHGRRIFYQWRDDASSSSQNALATQDLVQQESVFGLVAATASLEGSLARLDAQGIPVVGIALPSWNRYRNLFSHLYMPSPGTVARYIQAHGGTRIAVVTTGTVALTMETITQYKNAFSALGLAATDPIPYTSSSDSPQRIVHQLAAIHADALIGFTAPEDLADIAQAARAANLRLNVDVSLTGYDKALLPAFGQALAGVSIPVYFRPFEAGGPAIDRYRDAMTLYAPESIEPDQQFAMLAYIYTDLFLHGLDLAGTCPTREGFIKALRGVTDYDAGGLISPVDLSANSTRPLDCFAFVRVNSTGTAFDVVHQRLCSDGSESLPPGNESTPTGRSR
>NC_009921.1|WP_020458173.1|603226_603784_+|nuclear-transport-factor-2-family-protein
MTTPSELEELRREVRYLRDRQDILDCVNKQSRGHDRHDANLMTSVLHEDAIDEHGPAAHIGADYGPWANKQHSEVFANHLHNITTHTCEIEGDIAHAESYVIGTMVGRDGKTLAFMGGRYLDRLERRDGAWKIALRRCTIEWAFTANASFLHSGAFKGFLKGTWDTTDLSYARPLQLDTGPAVRW
>NC_009921.1|WP_020458172.1|602209_603124_+|TIGR03564-family-F420-dependent-LLM-class-oxidoreductase
MRIGLTGGASTPEKIIDQARKAEADGFHHLWYASVVQGDPLASMALAGRQTSTIELGTAVLQTYPCHPLLQAQRAASVTAAMGRPGFTLGLGPSHAGHIHAEYGLSYDRPGKNTEDYLRIVTTLLRDGGADITGEEWSTHVRSGTVQPAHPVPVLLAALSPRLLRVAGEHADGVILWMAPATAIEKHIEPKLSAAAKAAGRGALRIVAGLPVAVHDDESEARAAVAKNSTMYASSPAYQRIMAIGGADSPAQAAIAGDEASVERQLHALLDAGATDIWAQPIPVGDDPRASLRRTRNLLAALAR
>NC_009921.1|WP_041253631.1|601142_602132_+|TIGR03621-family-F420-dependent-LLM-class-oxidoreductase
MSLADARPFRFAVQTTTATSATEWRDLARRVEDLGYSTLFLADHYLGPGPVSTQTLLRPQHLAPIAAMAAAAAWTSTLRIGCRVFCVDYHMPAALAKEAATIDLLSDGRLEFGIGAGTNQGEYEAMGLTFHEAPQRVSKLEEVITLVKAHWSGEPISIDGDHIRVSGYAGLPRPVQRPCPRILIGGSRKRVLSLAAREADIVSMANVPWQPRNDAGLTPAEEAQRRHDIVRDAAGDRFPQLELESSPYLVSVPEDVDSALAQWSARLRKAIPEAQPDLLRNHPNVLVGSPDEITDHLQERRDRTGVNYITIPRGQIDEFAPVVSALTGR
>NC_009921.1|WP_020458170.1|600406_601156_+|SDR-family-oxidoreductase
MAAKLDGKVAIITGAGSGIGRASAHLFAAEGAKVVCADFSGKEKRTADEIGAAAVAVHVDVAVAADVERMVATAEDRFGKLDILFNNAGVAGPKMLITEQKEEDFDRVVAVNLKGVFLGMKYGIPAILRNGGGSLINTASAAGLVGWRKNAVYGASKGGVIQMTKAVALDFADRGVRVNAICPGMTWTGMVPGSDDLLEPPASVPAPPQPMSRWGLPSELATAALFLASDDSSFVTGVALPVDGGYVVG
>NC_009921.1|WP_020458169.1|599465_600350_+|SMP-30/gluconolactonase/LRE-family-protein
MVDVRLVTDARMTMGEGPVWDVDRDRLHWIDIFQAMVHQCALDGGDPRSTKFPGRVVASLCLRKGGGAVVTSGNEIHLFDLDSGETEMIFDAGRGPGFGFNDGTVDRQGRFVTGMADMALVKAIESGQGDLTPSGSLYRVDTDLSVHTIGDPIGVTNGPCFDKEGTTFYCNDSVLRRMYAWDYDTATGEATDRWVVAQFEDGIVVPDGTTVDEQGCLWVAAYDGGEIRRYAPDGTLDRRVPVPVASPTSVAFAGPELDVLVVTSRGGTTADGDNGRVLALHGLGVRGLPESKFG
>NC_009921.1|WP_020458168.1|598588_599428_+|TauD/TfdA-family-dioxygenase
MAIEVTRLAPEIGAEISGYTGRDLVNEAAAAACKAALDRYGVLVYREVHIEDGDLVRFSRLLGEVVVPKVNDPGEHPEIARITLDPEKSVLAGYRQGNFLWHIDGATDELPQKATLLTAREVDPAGGDTEFANTYAAYEALSDEEKAEIADLQVVHSFAIAQRIAYPDAADKQRASWEKVPTRVHPLVWTRANGRKSLLIGATAGMVVGRSEDRGRTLLDRLLQWSTSPRFTLRHQWRRGDLVIWDNTGVLHRALPFEPTSRRLMHRTTLVGQELVTAR
>NC_009921.1|WP_020458167.1|598035_598254_-|hypothetical-protein
MRDTGPLATTRPRSEGPVAVLPTERLAELYPTRDDYLRRYAEAVDAAIAAGLALPADHESLLGFTRPVRVPQ
>NC_009921.1|WP_020458166.1|597382_597967_-|TetR/AcrR-family-transcriptional-regulator
MARDTRERLLDAGLALFAGNGLAGTTVSGLEARAGLRAGSGSFYRHFASKEALFEAVIRRELDRFRASISDAAPGESAIADVKVTLALEFHQALTTLDQLGGLEAIISRDARAMGDLFDEVEGLFNAALDASTARLDQLMESGQIPRRDPQALAATIRSALVGYHLNTQSFRRSARRVPPADLIATLIDLISSK
>NC_009921.1|WP_083788149.1|609227_610772_+|helix-turn-helix-domain-containing-protein
MLAMTSPRDGDLGRPVRTASSSEELGELLSALKQRSGRSYEWIGRKVNAGRSTVQRYCTGQSVPVEFGTIERVARVCGADGDEIARLFRLWETAASISTSAGIELPTAGGDHEHTNPVEGVEYSTSPVSLVPPALAAADDSAPRPATQNEHSRLRGARRAGWRWNRRSISATAIIVVLFSSAVGTVLVLAMILAREPGVRPLGRPLADQAGWALSTAFSPDGKVMASSSRKGGVWLWNMADPATPVRIDPALTGPRDGVTSLAFSPDGSLLAGGSWDGSIWLWDITDSGASKPAGRALTDDSGPIWSVAFSADGRTLASGSDDTTVRLWDMTNRARPWQFVRLSSDMEFVTSVAFSADNRLLVAAGFSRTIAIWDMADRGAPKRLAQSLSTPATTYVAAFSPNGRLLATGSTDGLVRLWDLAVPEDPHPIGRPLTGHTNRVWSLAFSPDGGTLASSGFDNSVRLWDVTDLSNPEPIGAPLTGYQGWVLSVRFSPNGRVLASTSSDSTIRLWSLP
>NC_009921.1|WP_020458179.1|612580_612922_-|Lsr2-family-protein
MAQKTVVSLIDDLSGETADETVRFGLDGAQYEIDLSETNATKLREALASFVTAGRRSGGRAGSGRRGVRASSPRSASADRTADIREWARSNGYTVSDRGRIASTIVEAFDKAH
>NC_009921.1|WP_020458182.1|614950_615556_+|response-regulator-transcription-factor
MIKVLLADDENLIRGALAVLLSMEDDITVVAQAASGPEALATARLHRPDVALLDLQMPGLDGIAVAQALHADLPACANVIVTSHGRPGYLRRALAAGARGFLPKTVSVQVLADVVRVVHGGGRYVDPELAAEAIAAGDSPLTPREAEVLELAAGGAPVEEIAARLSLSRGTVRNYLSSAVAKLGAVNRHEAVQLARVRGWI
>NC_009921.1|WP_020458183.1|615598_618124_-|FtsX-like-permease-family-protein
MIRLVWHTVRARKGSLVGTFVALTLGVALLAAMALTLVSSVGGGGGRPTWYVDADVVVAGGGIVSVTTGSGEDRETASLRTATARGLPSGLRDRLAGLDASLVLDFAAYATAPGAPGDTVRPWSAAALHAYGWVAGGPPRGARDVVLSAPTAHRPGAEITVVTGRGVERFVVSGVLRTDAPAALYTADAVAEELADGRVAAVALNAPGAGPAGASTPAVMSLADAARAVVGDTALEDGSVQVLTGDDRRRAEPDPDAERRTEAVALLAATTGLAGFVSIFVVSGTFAYAVTARRREFGLLRAAGATPRQVFRIVLGEALTVGVLASLAGGALGAAIAPDFAARLARTGFVPSDFTARFVFWPVAAAFGTGLGVALLGAWVAARRAGRVRPVEALRDAAVDRRPMTTARALAGLLALGCCVPLVAVLVANPSADAVALIMITALFLIVACAMFAPLVVPPLVSLLSAPLSGSSGAVGLLAGHGARAAVLRTAATAAPILVTVGIAGSTLTGLGTLQAATQNAARERITAEALTMPVTGKGLPDASVAALREVPGVSAAVPVTESRVYVRDGDEPEGWTGYYASGADLAAVLDVPLVAGSLADLAGTDTVAVPEGRWELGETAELWLGDSTPARLRVVAVFERQLDLSETVLLPSRLRDRHALPGADVVYLRLAPDASLEQVRAAAAAGAGTVVDTGSYLSAAGEEEARVNRQASVAMLGLSLVYTGIAIANTLVMATRDRAREFATIRLAGATRRQVLWVVGTEAVLVTCIGVLLAAVVTAVTALGARHGLADIAPSVPLAVPWAPLAGIVLACLVTAVLASVIPAALLLRRRPAELAGVRE
>NC_009921.1|WP_020458184.1|618120_618954_-|ABC-transporter-ATP-binding-protein
MTAAVALRGVSKVYGRRTAAVTALDDVTLAFVCGTFTAVMGPSGSGKSTLLQCAAGLDRPTAGEVFLDGENLARLSENALTVLRRDRVGFVFQAFNLVPSLTAELNVALPLRLAGRRPRRREVREVLEAVGLADRGRRRPAELSGGQQQRVAIARALVTRPSVLFADEPTGALDSTTGREVLTLLRGLVDRDGQTIVMVTHDPVAASHADRVVFLADGRPAGELRDPTPRTVAARLAGLEPVAEAAEAAEATAAAVTRARAGEPPSGRLTGPVGERP
>NC_009921.1|WP_020458185.1|618950_619637_-|DUF2306-domain-containing-protein
MSTLASSTGPARGRGHAAAWWFALSAVAIALFAPLPYLTTSLTALAEQDSDLALNYVDRPTPIQIAFYLHVALGGLALLLSPVQLSARVRARAPRLHRTAGRITLSAILVAGVAGAVLSSVNLAGPVGTAGFGLLALLWVSFAVAAWRAIRHRDVPAHRRWALRAFALTYAAVTLRLWLGVLIATQTGLAGTDADVAFGRAYHVVPFLCWVPNLLVAQWFLTRREVSA
>NC_009921.1|WP_157472286.1|619938_621204_+|histidine-kinase
MVASDVLSVPPGPLPREGAASPGARPGHPLWRARPYRADVWLAIGLAVATITVTLVSSGRAPYHPPDAVTAALAAVSALALAWRQAAPLAAMAVTSTIVAVNAAAGYAVVAVQWPAWLALFGCFSVGGRGVRIASTALCVMAVGGYALFDRGALTVEDMAGITMSFLIATVGGDAARSRRAVAAAQHAQVRGEAREQALAAERLLHEERGRLAGELHDALGHTVNVMVLQAGVARRLFAENPAFAQQALADIENVGREALGELDRMLRVLHPVQDPRQGDGGLDVSDDDPDDAHGQAGAQGLAALADRIRATGREVDLDAEPVDLSAGSERVLYRIVREALTNAVRHTDTGRIRVRVSRVADQIRVEVFNEGAGFASPVPGRGLIGMRERARLEGGSFEAGPVEGGFRVLATLPTHPATGS
>NC_009921.1|WP_041253634.1|621200_621869_+|response-regulator-transcription-factor
MITVLLADDDGLVRSGLRALLDAEPDICVAAEAATGEEAVLAARSYRPDVVLMDVRMPRRDGVWATSQITSWPHPRPRVLVLTTFDVDKVVEDALAAGADGFLLKRATPEQLIDGIRVVAGGDALVAPAVTRRLLVTLARRRVPDRELLTRADQLTDREAEVLRALAEGRSNTEIAAVLNLSVETVRTHVKRILSKLGVRDRTQAVVWAYRAGFVDMTAPGP
>NC_009921.1|WP_157472288.1|623061_623922_+|SAM-dependent-methyltransferase
MMLGGRGVSDTPTGHRRWKTLVDKVDRAELRTDAPHSARMYDYYLGGKDNFPADREGAEQAIAVFPTLRDAARENRAFLVRAIRYLASEVGIRQFLDIGTGIPTSPNLHEVAQGIAPDARVVYADNDPIVLAHARALLTSTPEGRTVYLDADVRNVDQILAAPALRDTLDLTRPVALSLLAVLPFVEGDAPYAIVRSFLDALPAGSYLVLSHGTADLDPSARRIETSYRERGLECQFRSRAEVERLFDGLTLVDPGVQVIHRWRPDGTAEHLSDAEVCGYCGVGRK
>NC_009921.1|WP_020458190.1|624518_624797_+|hypothetical-protein
MDRWHKAGGAPAGRPVALHDYLGLGPIEYALWVERPSSLRFVTEARRAGRRVDDITGLASIAVEEANDDDAEAQRLVAWLRATRRIPTDHTG

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Crispr_ID: NC_009921_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009921_2

1655562-1657804

TypeIII-D?,TypeIII-A

Consensus_repeat	Method
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CRISPRCasFinder
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CRT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	PILER-CR
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CRT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CRISPRCasFinder
GTTGCGATCCCTCCAGGGATGATCAGCGACC	CRT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CRISPRCasFinder
GTTGCGATCCCTCCAGGGATGATCAGCGAC	PILER-CR

32 spacers

csx19,csm3gr7,cas6

The CRISPR arrays of NC_009921_2

>merge|NC_009921|2|1655562-1657804|CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder,CRT,CRISPRCasFinder,PILER-CR
GTTGCGATCCCCCCAGGGGTGATCAGCGACAACCCTGGTCGCGCGCCCACCGGCGGCGGGCACGGGTTGCGATCCCTCCAGGGATGATCAGCGACTCGGCCCGGTCGGCTCCTACTGGGAGCACTGGCGGGCGTTGCGATCCCTCCAGGGATGATCAGCGACTGCAGACCTGCGGGTGCTGCGGCGGGCAGTGGGCGGGTTGCGATCCCTCCAGGGATGATCAGCGACCCAGATCGCGGCGACCTGACGGAGGGTCGTCTCCGTTGCGATCCCTCCAGGGATGATCAGCGACGGGACGCACGCGCCCGCAGGCCACGGCTCAGGATGTAGTTGCGATCCCTCCAGGGATGATCAGCGGCTAGGCCGGCCCGACGTCGACCACGTCCTGGACGCCATGTTGCGATCCCTCCAGGGATGATCAGCGACGTGAGCTGAGGTGCGTCGCGGTCGAACGGGCGAGGTTGCGATCCCTCCAGGGATGATCAGCGACGAGGACACGGGCGACGCAGCCCGACGTGAGTTGGTGTTGCGATCCCTCCAGGGATGATCAGCGACGCGGCCACCCGGGCGTCCTCCACCAGCCGACGCCGTTGCGATCCCTCCAGGGATGATCAGCGACAAGACCGCACCGAGGATGACATGCGGGTCTACACCTGTTGCGATCCCTCCAGGGATGATCAGCGACGAATCGTCACACGCCTGTTCCACGGCCCTGAGCTGTTGCGATCCCTCCAGGGATGATCAGCGACGTGGCCCACTCGCGGAACGCTGCCGCCCCTGCGGGTTGCAGGGATGATCAGCGACCCCGCGAACGTCTTCATGGCCGTCATGCAGGGCCTGTTGCGATCCCTCCAGGGATGATCAGCGACTCGTGCCGGATGTAGTCGAGCTCATGCTGGAAGCCGGTTGCGATCCCTCCAGGGATGATCAGCGACACGGCATCGAGTTGCCGAAGTTGGCGTCGAGCATGTAGTTGCGATCCCTCCAGGGATGATCGGCGACCTGGTCCAGGGCGAGCTCGGCGAGACGCCGGCGACGTTGCGATCCCTCCAGGGATGATCGGCGACCCGACGACCTGCCCTGGGAGCACGGCCCCCGCAGCTGTTGCGATCCCTCCAGGGATGATCAGCGACCTCGCCGCCGCCGCCGGCCGGCGGCGCCCTGGGCCAGTTGCGATCCCTCCAGGGATGATCAGCGACGTCGGGCATGGACGTGGCCGAGCCGGACGGGTTCAGTTGCGATCCCTCCAGGGATGATCAGCGACAGGGTGGCGTGGTCGGCGCTGCCGCGCATGGGCCCGTGTTGCGATCCCTCCAGGGATGATCAGCGACTGTCCAGCATGTTGACGCTGTCGAACACGGTCGACCGTTGCGATCCCTCCAGGGATGATCAGCGACGGCAGATCCACTTCCCCGACGGCACCCCGCTTCTGGGGTTGCGATCCCTCCAGGGATGATCAGCGACGCGGGCCTGGTGCGCACCGACACGTGGATCCCGAAGTTGCGATCCCTCCAGGGATGATCAGCGACTCGAGGACGCCCGCCAGCACCTGAACTTCCGGTCGACGTTGCGATCCCTCCAGGGATGATCAGCGACGGACGCCCTGGCGGGCGGAGACCCCCGCCCCCTCGCGTTGCGATCCCTCCAGGGATGATCAGCGACCCGGCGGCCGCGCTGGCCGGTTTCATGAATCCGACCGGGTTGCGATCCCTCCAGGGATGATCAGCGACACCACAACCCGCACCAGGGGGAGCTGTGCCGGGCGTTGCGAATGATCAGCGACCCGAGGCGGCGATGGGCGGGACCTGGTCACCGCTGTTGCGATCCCTCCAGGGATGATCAGCGACCAGCCGACGGGGATGGCACTACCGGCGCCGGCGGGCGTTGCGATCCCTCCAGGGATGATCAGCGACTCAGAGTGCCACTCGGAGCACCGTTCCTCGACGTGGGTTGCGATCCCTCCAGGGATGATCAGCGACCCCGGCGGCCGGCCGATGACCGCGTTCCCGGCCCCGGGTTGCGATCCCTCCAGGGATGATCAGCGACGCATGGAGGTAGCCGGGGAATTGGGGGGCGGGGTTTATGTTGCGATCCCTCCAGGGATGATCAGCGACCAGGCGCAGCGACCGACCTGCACGACGGGGATGGGTTGCGATCCCTCCAGGGATGATCAGCGACCGCCGACTGTCGCGCGGCTCCTGGCCGAGCGCCTGTTGCGATCCCTCCAGGGATGATCAGCGACC

>NC_009921|2|2|1655562-1656311|CRISPRCasFinder
GTTGCGATCCCCCCAGGGGTGATCAGCGAC	AACCCTGGTCGCGCGCCCACCGGCGGCGGGCACGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGGCCCGGTCGGCTCCTACTGGGAGCACTGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGCAGACCTGCGGGTGCTGCGGCGGGCAGTGGGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGATCGCGGCGACCTGACGGAGGGTCGTCTCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGGACGCACGCGCCCGCAGGCCACGGCTCAGGATGTA
GTTGCGATCCCTCCAGGGATGATCAGCGGC	TAGGCCGGCCCGACGTCGACCACGTCCTGGACGCCAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTGAGCTGAGGTGCGTCGCGGTCGAACGGGCGAG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAGGACACGGGCGACGCAGCCCGACGTGAGTTGGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGCCACCCGGGCGTCCTCCACCAGCCGACGCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AAGACCGCACCGAGGATGACATGCGGGTCTACACCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAATCGTCACACGCCTGTTCCACGGCCCTGAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGACGTGGCCCACTCGCGGAACGCTGCCGCCCCTGCGGGTTGCAGGGATGATCAGCGACCCCGCGAACGTCTTCATGGCCGTCATGCAGGGCCTGTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGTGCCGGATGTAGTCGAGCTCATGCTGGAAGCCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACGGCATCGAGTTGCCGAAGTTGGCGTCGAGCATGTA
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CTGGTCCAGGGCGAGCTCGGCGAGACGCCGGCGAC
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CCGACGACCTGCCCTGGGAGCACGGCCCCCGCAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CTCGCCGCCGCCGCCGGCCGGCGGCGCCCTGGGCCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTCGGGCATGGACGTGGCCGAGCCGGACGGGTTCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AGGGTGGCGTGGTCGGCGCTGCCGCGCATGGGCCCGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGTCCAGCATGTTGACGCTGTCGAACACGGTCGACC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCAGATCCACTTCCCCGACGGCACCCCGCTTCTGGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGGCCTGGTGCGCACCGACACGTGGATCCCGAA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGAGGACGCCCGCCAGCACCTGAACTTCCGGTCGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGACGCCCTGGCGGGCGGAGACCCCCGCCCCCTCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCGGCGGCCGCGCTGGCCGGTTTCATGAATCCGACCGG
GTTGCGATCCCTCCAGGGATGATCAGCGACACCACAACCCGCACCAGGGGGAGCTGTGCCGGGCGTTGCGAATGATCAGCGACCCGAGGCGGCGATGGGCGGGACCTGGTCACCGCTGTTGCGATCCCTCCAGGGATGATCAGCGAC	CAGCCGACGGGGATGGCACTACCGGCGCCGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCAGAGTGCCACTCGGAGCACCGTTCCTCGACGTGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCCGGCGGCCGGCCGATGACCGCGTTCCCGGCCCCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCATGGAGGTAGCCGGGGAATTGGGGGGCGGGGTTTAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CAGGCGCAGCGACCGACCTGCACGACGGGGATGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CGCCGACTGTCGCGCGGCTCCTGGCCGAGCGCCT


>NC_009921|2|1|1655562-1656310|CRT
GTTGCGATCCCCCCAGGGGTGATCAGCGAC	AACCCTGGTCGCGCGCCCACCGGCGGCGGGCACGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGGCCCGGTCGGCTCCTACTGGGAGCACTGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGCAGACCTGCGGGTGCTGCGGCGGGCAGTGGGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGATCGCGGCGACCTGACGGAGGGTCGTCTCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGGACGCACGCGCCCGCAGGCCACGGCTCAGGATGTA
GTTGCGATCCCTCCAGGGATGATCAGCGGC	TAGGCCGGCCCGACGTCGACCACGTCCTGGACGCCAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTGAGCTGAGGTGCGTCGCGGTCGAACGGGCGAG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAGGACACGGGCGACGCAGCCCGACGTGAGTTGGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGCCACCCGGGCGTCCTCCACCAGCCGACGCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AAGACCGCACCGAGGATGACATGCGGGTCTACACCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAATCGTCACACGCCTGTTCCACGGCCCTGAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGACGTGGCCCACTCGCGGAACGCTGCCGCCCCTGCGGGTTGCAGGGATGATCAGCGAC	CCCGCGAACGTCTTCATGGCCGTCATGCAGGGCCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGTGCCGGATGTAGTCGAGCTCATGCTGGAAGCCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACGGCATCGAGTTGCCGAAGTTGGCGTCGAGCATGTA
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CTGGTCCAGGGCGAGCTCGGCGAGACGCCGGCGAC
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CCGACGACCTGCCCTGGGAGCACGGCCCCCGCAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CTCGCCGCCGCCGCCGGCCGGCGGCGCCCTGGGCCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTCGGGCATGGACGTGGCCGAGCCGGACGGGTTCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AGGGTGGCGTGGTCGGCGCTGCCGCGCATGGGCCCGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGTCCAGCATGTTGACGCTGTCGAACACGGTCGACC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCAGATCCACTTCCCCGACGGCACCCCGCTTCTGGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGGCCTGGTGCGCACCGACACGTGGATCCCGAA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGAGGACGCCCGCCAGCACCTGAACTTCCGGTCGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGACGCCCTGGCGGGCGGAGACCCCCGCCCCCTCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCGGCGGCCGCGCTGGCCGGTTTCATGAATCCGACCGG
GTTGCGATCCCTCCAGGGATGATCAGCGACACCACAACCCGCACCAGGGGGAGCTGTGCCGGGCGTTGCGAATGATCAGCGACC	CGAGGCGGCGATGGGCGGGACCTGGTCACCGCT
GTTGCGATCCCTCCAGGGATGATCAGCGACC	AGCCGACGGGGATGGCACTACCGGCGCCGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGACT	CAGAGTGCCACTCGGAGCACCGTTCCTCGACGTGG
GTTGCGATCCCTCCAGGGATGATCAGCGACC	CCGGCGGCCGGCCGATGACCGCGTTCCCGGCCCCGG
GTTGCGATCCCTCCAGGGATGATCAGCGACG	CATGGAGGTAGCCGGGGAATTGGGGGGCGGGGTTTAT
GTTGCGATCCCTCCAGGGATGATCAGCGACC	AGGCGCAGCGACCGACCTGCACGACGGGGATGG
GTTGCGATCCCTCCAGGGATGATCAGCGACC	GCCGACTGTCGCGCGGCTCCTGGCCGAGCGCCT


>NC_009921|2|1|1655627-1657408|PILER-CR
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGGCCCGGTCGGCTCCTACTGGGAGCACTGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGCAGACCTGCGGGTGCTGCGGCGGGCAGTGGGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGATCGCGGCGACCTGACGGAGGGTCGTCTCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGGACGCACGCGCCCGCAGGCCACGGCTCAGGATGTA
GTTGCGATCCCTCCAGGGATGATCAGCGGC	TAGGCCGGCCCGACGTCGACCACGTCCTGGACGCCAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTGAGCTGAGGTGCGTCGCGGTCGAACGGGCGAG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAGGACACGGGCGACGCAGCCCGACGTGAGTTGGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGCCACCCGGGCGTCCTCCACCAGCCGACGCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AAGACCGCACCGAGGATGACATGCGGGTCTACACCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAATCGTCACACGCCTGTTCCACGGCCCTGAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTGGCCCACTCGCGGAACGCTGCCGCCCCTGCGGGTTG
CAGGGATGATCAGCGACCCCGCGAACGTCT	TCATGGCCGTCATGCAGGGCCTGTTGCGATCCCTC
CAGGGATGATCAGCGACTCGTGCCGGATGT	AGTCGAGCTCATGCTGGAAGCCGGTTGCGATCCCTC
CAGGGATGATCAGCGACACGGCATCGAGTT	GCCGAAGTTGGCGTCGAGCATGTAGTTGCGATCCCTC
CAGGGATGATCGGCGACCTGGTCCAGGGCG	AGCTCGGCGAGACGCCGGCGACGTTGCGATCCCTC
CAGGGATGATCGGCGACCCGACGACCTGCC	CTGGGAGCACGGCCCCCGCAGCTGTTGCGATCCCTC
CAGGGATGATCAGCGACCTCGCCGCCGCCG	CCGGCCGGCGGCGCCCTGGGCCAGTTGCGATCCCTC
CAGGGATGATCAGCGACGTCGGGCATGGAC	GTGGCCGAGCCGGACGGGTTCAGTTGCGATCCCTC
CAGGGATGATCAGCGACAGGGTGGCGTGGT	CGGCGCTGCCGCGCATGGGCCCGTGTTGCGATCCCTC
CAGGGATGATCAGCGACTGTCCAGCATGTT	GACGCTGTCGAACACGGTCGACCGTTGCGATCCCTC
CAGGGATGATCAGCGACGGCAGATCCACTT	CCCCGACGGCACCCCGCTTCTGGGGTTGCGATCCCTC
CAGGGATGATCAGCGACGCGGGCCTGGTGC	GCACCGACACGTGGATCCCGAAGTTGCGATCCCTC
CAGGGATGATCAGCGACTCGAGGACGCCCG	CCAGCACCTGAACTTCCGGTCGACGTTGCGATCCCTC
CAGGGATGATCAGCGACGGACGCCCTGGCG	GGCGGAGACCCCCGCCCCCTCGCGTTGCGATCCCTC
CAGGGATGATCAGCGACCCGGCGGCCGCGC	TGGCCGGTTTCATGAATCCGACCGGGTTGCGATCCCTC
CAGGGATGATCAGCGACACCACAACCCGCA	CCAGGGGGAGCTGTGCCGGGCGTTGCGAATGATCAGCGACC
CGAGGCGGCGATGGGCGGGACCTGGTCACC	GCTGTTGCGATCCCTCCAGGGATGATCAGCGACC
AGCCGACGGGGATGGCACTACCGGCGCCGGCGGGCGTTGCGATCCCTCCAGGGATGATCAGCGAC	TCAGAGTGCCACTCGGAGCACCGTTCCTCGACGTGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCCGGCGGCCGGCCGATGACCGCGTTCCCGGCCCCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCATGGAGGTAGCCGGGGAATTGGGGGGCGGGGTTTAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CAGGCGCAGCGACCGACCTGCACGACGGGGATGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CGCCGACTGTCGCGCGGCTCCTGGCCGAGCGCCT


>NC_009921|2|2|1656336-1657291|CRT
	AACCCTGGTCGCGCGCCCACCGGCGGCGGGCACGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGGCCCGGTCGGCTCCTACTGGGAGCACTGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGCAGACCTGCGGGTGCTGCGGCGGGCAGTGGGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGATCGCGGCGACCTGACGGAGGGTCGTCTCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGGACGCACGCGCCCGCAGGCCACGGCTCAGGATGTA
GTTGCGATCCCTCCAGGGATGATCAGCGGC	TAGGCCGGCCCGACGTCGACCACGTCCTGGACGCCAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTGAGCTGAGGTGCGTCGCGGTCGAACGGGCGAG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAGGACACGGGCGACGCAGCCCGACGTGAGTTGGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGCCACCCGGGCGTCCTCCACCAGCCGACGCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AAGACCGCACCGAGGATGACATGCGGGTCTACACCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAATCGTCACACGCCTGTTCCACGGCCCTGAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGACGTGGCCCACTCGCGGAACGCTGCCGCCCCTGCGGGTTGCAGGGATGATCAGCGAC	CCCGCGAACGTCTTCATGGCCGTCATGCAGGGCCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGTGCCGGATGTAGTCGAGCTCATGCTGGAAGCCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACGGCATCGAGTTGCCGAAGTTGGCGTCGAGCATGTA
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CTGGTCCAGGGCGAGCTCGGCGAGACGCCGGCGAC
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CCGACGACCTGCCCTGGGAGCACGGCCCCCGCAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CTCGCCGCCGCCGCCGGCCGGCGGCGCCCTGGGCCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTCGGGCATGGACGTGGCCGAGCCGGACGGGTTCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AGGGTGGCGTGGTCGGCGCTGCCGCGCATGGGCCCGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGTCCAGCATGTTGACGCTGTCGAACACGGTCGACC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCAGATCCACTTCCCCGACGGCACCCCGCTTCTGGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGGCCTGGTGCGCACCGACACGTGGATCCCGAA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGAGGACGCCCGCCAGCACCTGAACTTCCGGTCGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGACGCCCTGGCGGGCGGAGACCCCCGCCCCCTCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCGGCGGCCGCGCTGGCCGGTTTCATGAATCCGACCGG
GTTGCGATCCCTCCAGGGATGATCAGCGACACCACAACCCGCACCAGGGGGAGCTGTGCCGGGCGTTGCGAATGATCAGCGACC	CGAGGCGGCGATGGGCGGGACCTGGTCACCGCT
GTTGCGATCCCTCCAGGGATGATCAGCGACC	AGCCGACGGGGATGGCACTACCGGCGCCGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGACT	CAGAGTGCCACTCGGAGCACCGTTCCTCGACGTGG
GTTGCGATCCCTCCAGGGATGATCAGCGACC	CCGGCGGCCGGCCGATGACCGCGTTCCCGGCCCCGG
GTTGCGATCCCTCCAGGGATGATCAGCGACG	CATGGAGGTAGCCGGGGAATTGGGGGGCGGGGTTTAT
GTTGCGATCCCTCCAGGGATGATCAGCGACC	AGGCGCAGCGACCGACCTGCACGACGGGGATGG
GTTGCGATCCCTCCAGGGATGATCAGCGACC	GCCGACTGTCGCGCGGCTCCTGGCCGAGCGCCT


>NC_009921|2|3|1656401-1657292|CRISPRCasFinder
	AACCCTGGTCGCGCGCCCACCGGCGGCGGGCACGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGGCCCGGTCGGCTCCTACTGGGAGCACTGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGCAGACCTGCGGGTGCTGCGGCGGGCAGTGGGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGATCGCGGCGACCTGACGGAGGGTCGTCTCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGGACGCACGCGCCCGCAGGCCACGGCTCAGGATGTA
GTTGCGATCCCTCCAGGGATGATCAGCGGC	TAGGCCGGCCCGACGTCGACCACGTCCTGGACGCCAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTGAGCTGAGGTGCGTCGCGGTCGAACGGGCGAG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAGGACACGGGCGACGCAGCCCGACGTGAGTTGGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGCCACCCGGGCGTCCTCCACCAGCCGACGCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AAGACCGCACCGAGGATGACATGCGGGTCTACACCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAATCGTCACACGCCTGTTCCACGGCCCTGAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGACGTGGCCCACTCGCGGAACGCTGCCGCCCCTGCGGGTTGCAGGGATGATCAGCGACCCCGCGAACGTCTTCATGGCCGTCATGCAGGGCCTGTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGTGCCGGATGTAGTCGAGCTCATGCTGGAAGCCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACGGCATCGAGTTGCCGAAGTTGGCGTCGAGCATGTA
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CTGGTCCAGGGCGAGCTCGGCGAGACGCCGGCGAC
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CCGACGACCTGCCCTGGGAGCACGGCCCCCGCAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CTCGCCGCCGCCGCCGGCCGGCGGCGCCCTGGGCCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTCGGGCATGGACGTGGCCGAGCCGGACGGGTTCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AGGGTGGCGTGGTCGGCGCTGCCGCGCATGGGCCCGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGTCCAGCATGTTGACGCTGTCGAACACGGTCGACC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCAGATCCACTTCCCCGACGGCACCCCGCTTCTGGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGGCCTGGTGCGCACCGACACGTGGATCCCGAA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGAGGACGCCCGCCAGCACCTGAACTTCCGGTCGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGACGCCCTGGCGGGCGGAGACCCCCGCCCCCTCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCGGCGGCCGCGCTGGCCGGTTTCATGAATCCGACCGG
GTTGCGATCCCTCCAGGGATGATCAGCGACACCACAACCCGCACCAGGGGGAGCTGTGCCGGGCGTTGCGAATGATCAGCGACCCGAGGCGGCGATGGGCGGGACCTGGTCACCGCTGTTGCGATCCCTCCAGGGATGATCAGCGAC	CAGCCGACGGGGATGGCACTACCGGCGCCGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCAGAGTGCCACTCGGAGCACCGTTCCTCGACGTGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCCGGCGGCCGGCCGATGACCGCGTTCCCGGCCCCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCATGGAGGTAGCCGGGGAATTGGGGGGCGGGGTTTAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CAGGCGCAGCGACCGACCTGCACGACGGGGATGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CGCCGACTGTCGCGCGGCTCCTGGCCGAGCGCCT


>NC_009921|2|3|1657315-1657804|CRT
	AACCCTGGTCGCGCGCCCACCGGCGGCGGGCACGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGGCCCGGTCGGCTCCTACTGGGAGCACTGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGCAGACCTGCGGGTGCTGCGGCGGGCAGTGGGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGATCGCGGCGACCTGACGGAGGGTCGTCTCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGGACGCACGCGCCCGCAGGCCACGGCTCAGGATGTA
GTTGCGATCCCTCCAGGGATGATCAGCGGC	TAGGCCGGCCCGACGTCGACCACGTCCTGGACGCCAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTGAGCTGAGGTGCGTCGCGGTCGAACGGGCGAG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAGGACACGGGCGACGCAGCCCGACGTGAGTTGGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGCCACCCGGGCGTCCTCCACCAGCCGACGCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AAGACCGCACCGAGGATGACATGCGGGTCTACACCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAATCGTCACACGCCTGTTCCACGGCCCTGAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGACGTGGCCCACTCGCGGAACGCTGCCGCCCCTGCGGGTTGCAGGGATGATCAGCGAC	CCCGCGAACGTCTTCATGGCCGTCATGCAGGGCCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGTGCCGGATGTAGTCGAGCTCATGCTGGAAGCCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACGGCATCGAGTTGCCGAAGTTGGCGTCGAGCATGTA
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CTGGTCCAGGGCGAGCTCGGCGAGACGCCGGCGAC
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CCGACGACCTGCCCTGGGAGCACGGCCCCCGCAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CTCGCCGCCGCCGCCGGCCGGCGGCGCCCTGGGCCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTCGGGCATGGACGTGGCCGAGCCGGACGGGTTCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AGGGTGGCGTGGTCGGCGCTGCCGCGCATGGGCCCGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGTCCAGCATGTTGACGCTGTCGAACACGGTCGACC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCAGATCCACTTCCCCGACGGCACCCCGCTTCTGGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGGCCTGGTGCGCACCGACACGTGGATCCCGAA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGAGGACGCCCGCCAGCACCTGAACTTCCGGTCGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGACGCCCTGGCGGGCGGAGACCCCCGCCCCCTCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCGGCGGCCGCGCTGGCCGGTTTCATGAATCCGACCGG
GTTGCGATCCCTCCAGGGATGATCAGCGACACCACAACCCGCACCAGGGGGAGCTGTGCCGGGCGTTGCGAATGATCAGCGACC	CGAGGCGGCGATGGGCGGGACCTGGTCACCGCT
GTTGCGATCCCTCCAGGGATGATCAGCGACC	AGCCGACGGGGATGGCACTACCGGCGCCGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGACT	CAGAGTGCCACTCGGAGCACCGTTCCTCGACGTGG
GTTGCGATCCCTCCAGGGATGATCAGCGACC	CCGGCGGCCGGCCGATGACCGCGTTCCCGGCCCCGG
GTTGCGATCCCTCCAGGGATGATCAGCGACG	CATGGAGGTAGCCGGGGAATTGGGGGGCGGGGTTTAT
GTTGCGATCCCTCCAGGGATGATCAGCGACC	AGGCGCAGCGACCGACCTGCACGACGGGGATGG
GTTGCGATCCCTCCAGGGATGATCAGCGACC	GCCGACTGTCGCGCGGCTCCTGGCCGAGCGCCT
GTTGCGATCCCTCCAGGGATGATCAGCGACC

>NC_009921|2|4|1657379-1657803|CRISPRCasFinder
	AACCCTGGTCGCGCGCCCACCGGCGGCGGGCACGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGGCCCGGTCGGCTCCTACTGGGAGCACTGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGCAGACCTGCGGGTGCTGCGGCGGGCAGTGGGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGATCGCGGCGACCTGACGGAGGGTCGTCTCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGGACGCACGCGCCCGCAGGCCACGGCTCAGGATGTA
GTTGCGATCCCTCCAGGGATGATCAGCGGC	TAGGCCGGCCCGACGTCGACCACGTCCTGGACGCCAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTGAGCTGAGGTGCGTCGCGGTCGAACGGGCGAG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAGGACACGGGCGACGCAGCCCGACGTGAGTTGGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGCCACCCGGGCGTCCTCCACCAGCCGACGCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AAGACCGCACCGAGGATGACATGCGGGTCTACACCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAATCGTCACACGCCTGTTCCACGGCCCTGAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGACGTGGCCCACTCGCGGAACGCTGCCGCCCCTGCGGGTTGCAGGGATGATCAGCGACCCCGCGAACGTCTTCATGGCCGTCATGCAGGGCCTGTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGTGCCGGATGTAGTCGAGCTCATGCTGGAAGCCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACGGCATCGAGTTGCCGAAGTTGGCGTCGAGCATGTA
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CTGGTCCAGGGCGAGCTCGGCGAGACGCCGGCGAC
GTTGCGATCCCTCCAGGGATGATCGGCGAC	CCGACGACCTGCCCTGGGAGCACGGCCCCCGCAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CTCGCCGCCGCCGCCGGCCGGCGGCGCCCTGGGCCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTCGGGCATGGACGTGGCCGAGCCGGACGGGTTCA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AGGGTGGCGTGGTCGGCGCTGCCGCGCATGGGCCCGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGTCCAGCATGTTGACGCTGTCGAACACGGTCGACC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCAGATCCACTTCCCCGACGGCACCCCGCTTCTGGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGGCCTGGTGCGCACCGACACGTGGATCCCGAA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGAGGACGCCCGCCAGCACCTGAACTTCCGGTCGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGACGCCCTGGCGGGCGGAGACCCCCGCCCCCTCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCGGCGGCCGCGCTGGCCGGTTTCATGAATCCGACCGG
GTTGCGATCCCTCCAGGGATGATCAGCGACACCACAACCCGCACCAGGGGGAGCTGTGCCGGGCGTTGCGAATGATCAGCGACCCGAGGCGGCGATGGGCGGGACCTGGTCACCGCTGTTGCGATCCCTCCAGGGATGATCAGCGAC	CAGCCGACGGGGATGGCACTACCGGCGCCGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCAGAGTGCCACTCGGAGCACCGTTCCTCGACGTGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCCGGCGGCCGGCCGATGACCGCGTTCCCGGCCCCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCATGGAGGTAGCCGGGGAATTGGGGGGCGGGGTTTAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CAGGCGCAGCGACCGACCTGCACGACGGGGATGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CGCCGACTGTCGCGCGGCTCCTGGCCGAGCGCCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC

>NC_009921|2|2|1657445-1657803|PILER-CR
	TCGGCCCGGTCGGCTCCTACTGGGAGCACTGGCGGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TGCAGACCTGCGGGTGCTGCGGCGGGCAGTGGGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGATCGCGGCGACCTGACGGAGGGTCGTCTCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGGACGCACGCGCCCGCAGGCCACGGCTCAGGATGTA
GTTGCGATCCCTCCAGGGATGATCAGCGGC	TAGGCCGGCCCGACGTCGACCACGTCCTGGACGCCAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTGAGCTGAGGTGCGTCGCGGTCGAACGGGCGAG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAGGACACGGGCGACGCAGCCCGACGTGAGTTGGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGCCACCCGGGCGTCCTCCACCAGCCGACGCC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AAGACCGCACCGAGGATGACATGCGGGTCTACACCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GAATCGTCACACGCCTGTTCCACGGCCCTGAGCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTGGCCCACTCGCGGAACGCTGCCGCCCCTGCGGGTTG
CAGGGATGATCAGCGACCCCGCGAACGTCT	TCATGGCCGTCATGCAGGGCCTGTTGCGATCCCTC
CAGGGATGATCAGCGACTCGTGCCGGATGT	AGTCGAGCTCATGCTGGAAGCCGGTTGCGATCCCTC
CAGGGATGATCAGCGACACGGCATCGAGTT	GCCGAAGTTGGCGTCGAGCATGTAGTTGCGATCCCTC
CAGGGATGATCGGCGACCTGGTCCAGGGCG	AGCTCGGCGAGACGCCGGCGACGTTGCGATCCCTC
CAGGGATGATCGGCGACCCGACGACCTGCC	CTGGGAGCACGGCCCCCGCAGCTGTTGCGATCCCTC
CAGGGATGATCAGCGACCTCGCCGCCGCCG	CCGGCCGGCGGCGCCCTGGGCCAGTTGCGATCCCTC
CAGGGATGATCAGCGACGTCGGGCATGGAC	GTGGCCGAGCCGGACGGGTTCAGTTGCGATCCCTC
CAGGGATGATCAGCGACAGGGTGGCGTGGT	CGGCGCTGCCGCGCATGGGCCCGTGTTGCGATCCCTC
CAGGGATGATCAGCGACTGTCCAGCATGTT	GACGCTGTCGAACACGGTCGACCGTTGCGATCCCTC
CAGGGATGATCAGCGACGGCAGATCCACTT	CCCCGACGGCACCCCGCTTCTGGGGTTGCGATCCCTC
CAGGGATGATCAGCGACGCGGGCCTGGTGC	GCACCGACACGTGGATCCCGAAGTTGCGATCCCTC
CAGGGATGATCAGCGACTCGAGGACGCCCG	CCAGCACCTGAACTTCCGGTCGACGTTGCGATCCCTC
CAGGGATGATCAGCGACGGACGCCCTGGCG	GGCGGAGACCCCCGCCCCCTCGCGTTGCGATCCCTC
CAGGGATGATCAGCGACCCGGCGGCCGCGC	TGGCCGGTTTCATGAATCCGACCGGGTTGCGATCCCTC
CAGGGATGATCAGCGACACCACAACCCGCA	CCAGGGGGAGCTGTGCCGGGCGTTGCGAATGATCAGCGACC
CGAGGCGGCGATGGGCGGGACCTGGTCACC	GCTGTTGCGATCCCTCCAGGGATGATCAGCGACC
AGCCGACGGGGATGGCACTACCGGCGCCGGCGGGCGTTGCGATCCCTCCAGGGATGATCAGCGAC	TCAGAGTGCCACTCGGAGCACCGTTCCTCGACGTGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCCGGCGGCCGGCCGATGACCGCGTTCCCGGCCCCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCATGGAGGTAGCCGGGGAATTGGGGGGCGGGGTTTAT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CAGGCGCAGCGACCGACCTGCACGACGGGGATGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CGCCGACTGTCGCGCGGCTCCTGGCCGAGCGCCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009921.1\|WP_020458987.1\|1645825_1646266_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020458985.1\|1645108_1645357_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_157473047.1\|1646970_1649718_+\|SARP-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|198111
NC_009921.1\|WP_020458983.1\|1643248_1644112_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020458986.1\|1645379_1645829_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020459003.1\|1673149_1674304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_009921.1\|WP_083788175.1\|1663769_1666409_-\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NC_009921.1\|WP_020458984.1\|1644111_1644996_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227300
NC_009921.1\|WP_020458982.1\|1641884_1643252_+\|CpaF-family-protein	unknown	unknown	gnl\|CDD\|227297
NC_009921.1\|WP_157472411.1\|1678161_1678875_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_009921.1\|WP_020458997.1\|1662042_1663773_-\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187857
NC_009921.1\|WP_085950111.1\|1676490_1677692_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_009921.1\|WP_020458996.1\|1661332_1662046_-\|TIGR03984-family-CRISPR-associated-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
NC_009921.1\|WP_157472400.1\|1640545_1641124_+\|flagellar-biosynthesis-protein-FlgA	unknown	unknown	gnl\|CDD\|379039
NC_009921.1\|WP_020458981.1\|1641120_1641888_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_041255607.1\|1668305_1669904_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020459002.1\|1671182_1673153_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|378923
NC_009921.1\|WP_157472406.1\|1658211_1659174_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187878
NC_009921.1\|WP_157472409.1\|1670183_1670351_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_157472403.1\|1646397_1646802_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009921.1\|WP_020458997.1\|1662042_1663773_-\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	1.93702e-18
NC_009921.1\|WP_020458984.1\|1644111_1644996_+\|hypothetical-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	0.00773445
NC_009921.1\|WP_020459003.1\|1673149_1674304_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	5.76544e-07
NC_009921.1\|WP_083788175.1\|1663769_1666409_-\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	3.97637e-18
NC_009921.1\|WP_157473047.1\|1646970_1649718_+\|SARP-family-transcriptional-regulator	gnl\|CDD\|198111	smart01043, BTAD, Bacterial transcriptional activator domain. Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.	1.56871e-06
NC_009921.1\|WP_020458982.1\|1641884_1643252_+\|CpaF-family-protein	gnl\|CDD\|227297	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion].	2.56984e-44
NC_009921.1\|WP_157472411.1\|1678161_1678875_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.00488e-17
NC_009921.1\|WP_085950111.1\|1676490_1677692_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26896e-67
NC_009921.1\|WP_020458996.1\|1661332_1662046_-\|TIGR03984-family-CRISPR-associated-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	3.43719e-43
NC_009921.1\|WP_157472400.1\|1640545_1641124_+\|flagellar-biosynthesis-protein-FlgA	gnl\|CDD\|379039	pfam13144, ChapFlgA, Chaperone for flagella basal body P-ring formation. ChapFlgA is a family similar to the SAF family, and includes chaperones for flagellar basal-body proteins and pilus-assembly proteins, FlgA, RcpB and CpaB. ChapFlgA is necessary for the formation of the P-ring of the flagellum, FlgI, which sits in the peptidoglycan layer of the outer membrane of the bacterium. FlgA plays an auxiliary role in P-ring assembly.	6.82933e-05
NC_009921.1\|WP_020459002.1\|1671182_1673153_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	1.41055e-29
NC_009921.1\|WP_157472406.1\|1658211_1659174_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	5.24127e-05

>NC_009921.1|WP_157473047.1|1646970_1649718_+|SARP-family-transcriptional-regulator
MIPLVLWMWRDVPLPSTWEPARWLTLARRGYLHPDIVPNTVAVLIWIAWGQVALALLREIAAQFQRGASATRTVLLPGVVQHLAGSWIASLSILFSLLAGRSAMVAVSLDLPASHPAAGSVQTIAANAAEPMGGPAPSTSAGNALPANGMPTEGTDPGGTTWRRHVVAPGETLWGIVGGEYDDLEPDAFPPAVAEVFETNRGTTDSLGRALDRPDLINPGMELRLPQLSTGQLPGGTYTAPQPISPPAPAPAPAPPAPTPAPASPASPASPRASASPPVTVPHDVPAVPPGDEPEVPLSTWIGGAGLLATTLVGLWAARRRRRDSTVTPAQEIPDPDPATAALHAALLDADDPDLLDRLDAALRSIGAAHRDQPDGPSPQILLVQPDQSIEVLLHPDGAQTLPPPWDAGPDPRIWTLPATAALTAAADIPPPCPALVQLGTTAAGAALYADLEALGTLGIATSPTDPNRLADFCRAILAAIVASPWADLTTVRTVGLDPHAFAAEERVQAAKDVTELTDDARAEAAAIDTVLRERGYPSTLNARIAEPGEEFDPTIALLATHLDTDAGRTEAADLAAAAGHGRRGLAVVLPAQPDILTAWMLRPDPAGRGSRLDPLGVLLTPVGLTDTDEAAVAAFIADAEAPPIDLPPPDPPAETPAVFVSPPWEVMVRLLGPIDITTRDGRTPPRAETRERTNEVLAWLVTHRHGTRTDLESALWPRGAKSKTLANVLARARRLLINLVGEDAKNWVPRYDRGPLTLDPRVVSDLDILQALLRHAIDQRDHHETAIATLQEALKLVRGVPVGYPWLDAQMGSILTTAPVNAAILLAEHQLAAGDTAGVLATTARGMEILPAHTTLFALRMRAHAAAGDPDAVKAEYRSYLRAEKAEPLWDGETDRDLEALHYKLTRRRTAGSG
>NC_009921.1|WP_157472403.1|1646397_1646802_+|hypothetical-protein
MAPGADEGSISLFLCVVLFGASLLFAALLSDQARVLHANGQAFDLAGSAARVGAQQLDPTALAAGAVQVDPRAATSAVHAYLAAHDVTDIRVTATEATVTVTLTQHVAFRIPILSSASGADITQTRSATATAGP
>NC_009921.1|WP_020458987.1|1645825_1646266_+|hypothetical-protein
MIRRPVPFRSRRHPRPRAERDGGSFAVEFAAGFGIVVAAILLIAVAHQTSQTGAAVTGAAREAARAASLAPTADGARDVAELLVQERFTDNTACAELAVETTTSRFGAAGTVQVTVTCRTKSLLGWQRTLRATGESAVDRYRGGTP
>NC_009921.1|WP_020458986.1|1645379_1645829_+|hypothetical-protein
MNITLPRPSTSSDDNPAGGDRTDGDRGTGAASDAGHVVAFVAVVGAVLVLLVLLLTLGVRWLAAEAATAASQRALEIAQAPDGTDGEARAVATGLATSVSLIAGVDVLVTRADDFVTVTVTAHDRLGGTVSRSATGPVIRFVPQTRPSP
>NC_009921.1|WP_020458985.1|1645108_1645357_+|hypothetical-protein
MIRRLSTLLLLLPSAITAYLARVERHRRASHDDRDRGDALSTAVIAVGLVAIAVAVIFILRERATEIARNVCTSTDPTECGQ
>NC_009921.1|WP_020458984.1|1644111_1644996_+|hypothetical-protein
MIRIAVAALGGAMVAYGLVTAGRAVTARRPDLGDDLAVLFADEPASSTSTLARWASRTVRLAHARGWNRLLREDDTVIAGRTVDAHTAARIGYLLAAVGAMAFLTLPGTLARLLPPTAVPLLLLGGALTGVQLADRPVVRLAAARRRDAALAVAAYTDLVRILVVGGLPLHAALSAAADTGTGWTFTLLRRSLDDGRLRGLPPDAALTALAADLPIPALADLARTVGSALRGASPVLALEARAAAIRAEETARVRGREAAADAQMELPATAVAIAFVAFLTYPLLTMINGDVGF
>NC_009921.1|WP_020458983.1|1643248_1644112_+|hypothetical-protein
MMALIGAFGGAAAGLGVWLFAAAARGSVHLVPSRLAALPGQLRRPAGHWLWAVGGGAVLVAAVTRIPALGLVVAALGYVMLENRSGPSVPEITRLGDAVGTWAEQVREGLDAGQHLRAAIVASTDHPPAELAGPLRRLVARLDVLSLPDALWAMRAEVPHPALGPMIAALDVAYRRGAGDLPRLMASQVEATRQSVALLRDQHALRARHRRAMTLLLVLFTGSTSVLLVTWPAFLAPYRTMSGQLVLAVIGGGVVLAVRALAAMSRPPLTPDFFPATALASAADRTS
>NC_009921.1|WP_020458982.1|1641884_1643252_+|CpaF-family-protein
MNRIPGTAPAVNTPAVNAATVTAVADSLREWLLTSLAVAGTGGDRQARAEELIERGVRKEQVRRTRSGQTVLDAATERAVRNRLRQDLSPLGPMTGVLTSPQWSDVEVNGAENMICTERTGGQRSRYSSPFRTEGEAFEWVAAQAATQGRRFDEANPSVRVRLPGGARLHAIAQVTGRVHISCRLFAPTLNTVEGLRAAGMFGPDVAAMLAATARMPDPCGLIISGATTAGKTTLLRAVLNAHPDRLVLDRVITVEDEAELFLDQRRFVNLVAFEAREPNLDGKGAYSMERFLSADLRRLTPDRVALGELKPDGGVMPLLLALGQGVARGVATTIHAPSAEDVVSRIRTYAAFGSRRVADSVVLDTIAATVDLIVQVARIGSRRVVTSVLEIAGRGERGLQAGQLWRWNPAAGRATRTRMEASDRLTAKLTAAGLDPNVLARDRVLSTTPGRGQR
>NC_009921.1|WP_020458981.1|1641120_1641888_+|hypothetical-protein
MTGCWAVATAGPGSAGATTLTLALAHATYGVAIEANPDGGVLAARLGLSLGTSSPGLDTLVAELGTADDSASVLEHAQRCASGLPVVACAPTEETAAGAVRSLAGMMPLLRMLAVEHFLAMDIGRFRTQASRPLVDGCDGLVLVTLAATEGLACTLLRLPSVLASVPRLVLAVRGASPYSTGEITRSARHRAGVEVPVVAIPDDPRGMAALTRQGRRRRRPSPLLRSAWDLMDLLTVLGAPPDVTGSAESAGAAG
>NC_009921.1|WP_157472400.1|1640545_1641124_+|flagellar-biosynthesis-protein-FlgA
MAVAALLVVMGAGTGAWAVTSSGDKADAVVLTRPLNRGELIETGDLAIARVSVEGTGVRLASPQAARESLVGRQALLDLPAGTLVTPEMAGSALPPAGLARVGLRLAPEALPSAQIQPGDWVQVVYPDGVSGEPTLIGDAVQVAAVEPAETDGTGGDGDTVVYLDAPADAAAWIATASAQSPQKLRLLGVRR
>NC_009921.1|WP_157472406.1|1658211_1659174_-|hypothetical-protein
MVRRERTRRRSPGQARREHGEKPAGSRQVPPPGRPLPTAPARPGPPLAGPHRGEGLPMTTPASRGGWRRALVALGTSYRGSQAYLQSALVALLLAPVLPDILIDLTGVEGKATAGVRLGGVALVAAACVAVFAVQNRRHRRDLARIGTLTSNVQPHDTLIIALSLRAGPQYQPRALRTGRLPSILEILVDRITPKTVILLRSPDVPDDAWTQTRDGLTSDGLQTGLLAVPNCEDPVDFVAYVNRALSRGPSGGAVYDLTSVAVDVTGGTKLMSLAMARLAAELDASCVYVTKAFRDADTIEPGTQIPYQFDPRQIVNAGP
>NC_009921.1|WP_020458996.1|1661332_1662046_-|TIGR03984-family-CRISPR-associated-protein
MTSGTLPDGTGSSGTVSIGAQPDSSVRLLVAHAPTSVTAQDVVALAGLLGQPCVGLLSSPTAHTVVRCHDGAAAAPDGPADLDGVFALRLFSPLGELRWLQTGGGRGTAVLLTETLPPPDGWPAHEEAVAAALDGRYALWGRRFVAHPDTAGWFRALEGRIGYLDVPAPTPASDPLPTGSQAGPPTEPGLWPAAYLQLRTREYLGRDDTGNAEVREERLLEITVADPEFGRSERTST
>NC_009921.1|WP_020458997.1|1662042_1663773_-|hypothetical-protein
MTAAAATRSAAETPEVNAGDPPSSPTGVLGEVETRIDWTLTLLAETAVAVGGAYAGDTTDLTIARDGLGRPYIPGTSWAGVLRSVAGRVGLSPAAVRAVFGHQENGRSETSDAGWASLVTVHDTVVTDTGLELRTGVGIDRVTGAAADRIRFDREVLPAGTSVTLRLRYEGPAGAGPEAVRTLLGAVRADGVAVGGSTRRGLGRFRCLTVTERTVDLRSRADLLAWFQGSATESEILPRQVDTSRLHLDVSWRPIRPVVVATGTPADGAHLVPVMARTATGDGLVPILPATSVKGVLRSLAERIARTVLADAAPAPSTATEDDDVDGDANDGGDGAPAADFVGTMDAFALRVPAIEALFGSRRRAGALWVADTAAQAPIIDPQAWADHLAGQPSTADGDTAEPDGGRPGWDRVRTHVAIDRWTGGTADQQLFTVQELAGVRWPALRLEVDLPALHRALARPAAEDRDAAAGDDDGSHRDRVRAALVLLGCALGVLLDGDTGFGHGTTRGLGEVEVTGLRVRMPADGDLPGCPDLSGANPDELREMWWMWLDDLAPRQGWVPALRPVPDGADVRTAP
>NC_009921.1|WP_083788175.1|1663769_1666409_-|hypothetical-protein
MAAGLGVRFSSGPRGAGRAGRQPRRSARSGPPRQRRSPALVDAVVRRNGAGRPDGRGEDPVSVDDDTRLVGSPSPPDGPPAALTAESELQIRTLSDWHVGSGARIPGRVNAAVRRDDDGLPYLPGTTLTGVLRDACLTVARGLDDGARDGTWEAWHQVLFGELATEGRGRAGRWLRPAALGVGAGRLSAGLRARLIDDPALRRETTFVKPGVRIDPETGRATDDMLRFVEMARVGLPLTAAVHIDLPEARSMVDDRSPVDEMWRAVTALLVLGAAWCERVGGDRRRGAGWVVLRWAGQDPAVWAEWLSRSGWTPEEPPATEPAAASVMSPPVPPDPPDPSPEARVASGSDSAAAEPVRLELRLTCVAPVRVPRQVIGNITLGHDHIPGAALLSWLSARWGDRVVRAAVASDDLLVRHAYPEIAGRRGLPAPLCLFRVRRTGELVNAARVQLPGEPARQVRDRWTVPDPVGDGVVLVETPLGAATHNAVSRSTQRPDSPAGLYAVEVLPAGTRLRTELVVSGRVVDQLAATFGARWWEPLLGQTRMGARRKGEYGLVQVDTVSPEGPTVCAPVTGRVCAGPPSLGGEFQVWAAADLVVSSRSLRQTGDPEDVRAALTTRLDGGGLRLGWAAQDGRLACVTRTRRRDSWQGRWQLPRESIVGLAAGSVLTLRVEDGAIDPAAWADLADRGLGERRAEGFGEVVIDAPLLDLAHLRAAEPAAAADDRTGEDRSGEQLSEAEQAALHHLRGSAVVSACRARLIELREQPDPPAGYAALRRGLRAMSPSQRSTWLTLANDAVLRAADTRLRAECARWTAREDRDRDTQRRLAECTLGLLDGGIEEVAGSGPLDAQLRREVFALLVGDLMDAARRPAAADTSDRP
>NC_009921.1|WP_041255607.1|1668305_1669904_-|hypothetical-protein
MNAELLFRNEKSTYTTAIYRAEGTLWGIEGQLGFALPTAVQEILQHAPETRPVKTRISPPSPWIRGTDYQPWRASKVLVPDMPAVTYGFLMNLNGPIRTWEHGPYRIDAVSTTLTFEDEHSPSLQLAYRIWHNERVIFASDTLSVALGSDLESDTTLRRIANHALDGRSARPYTPQREFLTRHGAELRSVLAPPTAPYPIGTRVKVRGLTGTTPASGIITDAILAADGSLHYGWRPDVARLPGHPMGRLLEWQLLAPAQHVQPTLQAPDAALTNTQAPDVLVYGAKIRTIDDPRFATGTVLRAILKPGGQPTYDVQPDDGTPGPVRIHAAHVEPVAGTAWPTVQSLLDARAEAGVPLETGEILVTLREATFVADGPTGPRPALPPQEWPSHDPILDPDSPDIPTPPKRGMPPTIAPPRIVIEDDYVRVYDPRHELLDAPHRIFETALSYPREDLIALLTAVPGLQLGGDESLVTLAALAAQNVPDEINVTLTPDPNGPEREHDLSTRPDPEIANPARPPDEGLDPPDLDPGM
>NC_009921.1|WP_157472409.1|1670183_1670351_+|hypothetical-protein
MRVPRGMWVGNKRGNAAGIAVASLRGYDEQDLRGQQSRTQHPSPVCFALPGAVVA
>NC_009921.1|WP_020459002.1|1671182_1673153_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MSVERGRFGDAGLDAEIAVVAVALLVASSAAAVWAGAQLAALAFGAHRPLDVGLGDGLAALPQLIADPAHPAHAWPARAAGDLPGQLGYWAATVVPLAVLAMLSGLAAFLLVGDGVGVARRRRMGIDPEARFARPADLAPLWLGGPTRGRMILGRIGGPRGRLVATEDTNRPLDAAVPRWRARRAARRRGQRGSVIVLGPSQCGKTAALAIPAILEWDGPLIALSVKNDLLGATISRRRQVGDVAVFDPAGVTGELGAPWSPLGAARTLAGARRAARSIANATSWTSASSGDMGFWTAAAEDLLGQLFWTAAVVDLGMDTVVSWVVSMDKETVRGLLTPLASHRDPTLAADGTQVLAGFQGIWANDRRQISSTYLVARQMIQPWQEPEIAASATASHLDLEWLLDTGPDGQAANTLYLSADLDDAERLAPVLGGLLDDLMRQAYSHVGRTGVPLDPPLLVVVDEAGNWPMRNLPGRISTCAGIGIQLVLVYQSKAQIDAAYGPKADIVISNAVTKVFFAGQSDRSTLEYAAGLLGQEHVVQTSTNVDSTGLVGPSGRRGVSRSPTRVELLPSALLRQVAPGQALLVHNTLPPAHLFGRYWYLDEDLHALATGHRTSRRDLVRQAARQRITPGNSPDRPPPPTASGDEQSAAPWWPW
>NC_009921.1|WP_020459003.1|1673149_1674304_+|hypothetical-protein
MTLPSPTAPDNTPFHSFRVAGGSVVLDLPFRPPPGWTVRAATLWPDSRSSFGWSADHWALGPGGRGFVPGLIDVGDVIQFAAESQTPQHELPANIWAPRQTPTAAQPRAIHSWFGYLHGITRTSLIVRGPYPSPEAAYYTAQRALQIDLARTETARELPHPAEPLHPAAPPAAVSLDYHGDAATVGDPYHGWITVPSRDLASALMLPRHELIHRLRGHVPHLSGREPQVTIAALAARHIPTQLPDLLNPPTPTPPPHPPGVPGPSQPTPAGPEGPAAAEPAPSTTEPTATDPPGNRHDVPVTPAAPSAQHHPDGTPGPPVKMHSDPDAATSTPPPAPSAPTADPTPTGAAAGPSPAGPAEAHGLANTGWVPPDLTLSDPGIDLL
>NC_009921.1|WP_085950111.1|1676490_1677692_+|IS3-family-transposase
MTQRRRKFSPEFKDEAVKMVIETSRPISQVAVELGILEGTLGTWVAAYRRAHADEEPPPTVDERARLRELERQNRELRMENEFLKKAAGVLRQGSSVSDTFEFIDAEYAARTTTNTSAPAPSVIQMCAWLSVSRSGFYEWRDRPASATATRRGALATLVVRSFTASDGTYGYRRVHSDLLAWGRPCSPELVRALMREQGLVPCQPRPWRHTLTEPGQTPAAIPDLLQRDFTADTPGTKMVGDITYIPTWEGWLYLATVIDCHTKAVIGWAMDDNYKTGLIETAITMAARNHQLTDGAIFHSDRGSNYTSTQFAATLKNLGIRQSVGRTGICYDNAMAESFFAALKNERVHRTAYPTREHARRDIARYIELRYNTTRRHSGLDYRTPQQVHDEYLKRQTAA
>NC_009921.1|WP_157472411.1|1678161_1678875_+|CRISPR-associated-endoribonuclease-Cas6
MSLLPGVSVRFRVDVGADKATIPWRDVFGPARAVAYELIRGQDADLAEELHGRGYAGSSLRPLGLSSPYFRGPARGHDVYRASKDGTVWFGSPVPRIAGALLAGLAGRRQLRWGSVELDVHGVQLESTPDHSSGETVFSTVTPVLARYEDRYIFPDHPAFVATLVHNLSHKADVLGLPNEVEFEVLSAGPPRKFFVQHTPRHGCVVRARVHAAPALLDALYDWGLGLGTNQGFGWIR

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Crispr_ID: NC_009921_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009921_3

1674453-1676262

Unclear

Consensus_repeat	Method
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CRISPRCasFinder
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CRT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	PILER-CR
TGTTGCGATCCCTCCAGGGATGATCAGCGAC	PILER-CR
GTTGCGATCCCTCCAGGGATGATCAGCGAC	PILER-CR

27 spacers

csm3gr7,csx19,cas6,cas8b2,cas7,cas5,cas3,cas4,cas2

The CRISPR arrays of NC_009921_3

>merge|NC_009921|3|1674453-1676262|CRISPRCasFinder,CRT,PILER-CR,PILER-CR,PILER-CR
TCCCTTGGCCCTCCATGGATGATCAGCGACCTGGGGCGGACGGGGTCGGCGTGCCCGGTGGATGCGCGTTGCGATCCCTCCAGGGATGATCAGCGACGCGAAGACGAGCGCCGGGCCCTCAAGCGCCAGGTGTTGCGATCCCTCCAGGGATGATCAGCGGCCGCTCCCGCCGAAGCCCACCCCGATCGGCCTGATCCGGTTGCGATCCCTCCAGGGATGATCAGCGACCCAGTGGGCGATCCCCGGCGGGATGGTGGACCCGGGGTTGCGATCCCTCCAGGGATGATCAGCGACGGCAACTTCCCGCACTCTGCGGTCGTCAACGGTCCCTGTTGCGATCCCTCCAGGGATGATCAGCGACTCTACCTCGCCTGCCCCCCGGAAGCCCCTGGACGTTGCGATCCCTCCAGGGATGATCAGCGACGGTAGCCAGGCCGTGAAAGCGCCGGTGACGTACCGGCGTTGCGATCCCTCCAGGGATGATCAGCGACTAGGGGTGTAGGCCACGGCCTCGCCGAGGTGCGCGGGTTGCGATCCCTCCAGGGATGATCACCGACAGCGCGTCACCGATCAGCGCGAGGCCGGACAGTGACGTTGCGATCCCTCCAGGGATGATCAGCGACGCGGTGTGCTCCGGCTGCTGGGTGCAGGTGCAGTGCGGGTTGCGATCCCTCCAGGGATGATCAGCGACGTACGCCCACGGCCCCGCCACCCTCACCCCGGACGAGTTGCGATCCCTCCAGGGATGATCAGCGACAGGGCCAGCCGTACCAGCCGCTGACCTCGCCCGGGGAGTTGCGATCCCTCCAGGGATGATCACCGACCTCGACGAGGTGGGCCAGGAGCCGGCCTGAGCTGCTGTTGCGATCCCTCCAGGGATGATCAGCGACATGCCGCGTGGGAGTGGGCGACGCGGGTGACGCAGGTGTTGCGATCCCTCCAGGGATGATCAGCGACCTGAGCGCGTCGACATCGGCGGGTCGACCGCCAAGTTGCGATCCCTCCAGGGATGATCAGCGACACGCGGGGGAGGACTTCGACCTCGACCCGAACTTGTTGCGATCCCTCCAGGGATGATCAGCGACGGCCCCACCGGCAGGCGTCGCTGCATCATCTGCAAGTTGCGATCCCTCCAGGGATGATCAGCAACCAGGAGCCGGCCTGGAGCTGCTCGACGCCGGCCCCGCTCGAGTTGCGATCCCTCCAGGGATGATCAGCGACCGGTGTCGTCGGGGATGGCGACGTCGACAGGCTGTCGTTGCGATCCCTCCAGGGATGATCAGCGACACCGGCACCGGAACCGCTCCTGGGCGGCCTGGCGGTTGCGATCCCTCCAGGGATGATCAGCGACACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCGGTTGCGATCCCTCCAGGGATGATCAGCGACACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCGGTTGCGATCCCTCCAGGGATGATCAGCGACTCGTGGTCGTCAGTGCTCGGTCCAGTCTCCGCGCTCGTTGCGATCCCTCCAGGGATGATCAGCGACGCACACCCGGGTCGGTCGGACCTCGCGCCAGTCAGCGTTGCGATCCCTCCAGGGATGATCAGCGACCCGGCACGGTGGCTATTGGACAAGCCTAGGATCGCGTTGCGATCCCTCCAGGGATGATCAGCGACACCGACCTGTACGCCGAGCGCGGTCGCGACATCGGCGTTGCGATCCCTCCAGGGATGATCAGCGACGCTGCTCGCCATGGACACCGACGCGATGACCAACTTGTTGCGATCCCTCCAGGGATGATCAGCGAC

>NC_009921|3|5|1674453-1676262|CRISPRCasFinder
TCCCTTGGCCCTCCATGGATGATCAGCGAC	CTGGGGCGGACGGGGTCGGCGTGCCCGGTGGATGCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGAAGACGAGCGCCGGGCCCTCAAGCGCCAGGT
GTTGCGATCCCTCCAGGGATGATCAGCGGC	CGCTCCCGCCGAAGCCCACCCCGATCGGCCTGATCCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGTGGGCGATCCCCGGCGGGATGGTGGACCCGGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCAACTTCCCGCACTCTGCGGTCGTCAACGGTCCCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCTACCTCGCCTGCCCCCCGGAAGCCCCTGGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGTAGCCAGGCCGTGAAAGCGCCGGTGACGTACCGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TAGGGGTGTAGGCCACGGCCTCGCCGAGGTGCGCGG
GTTGCGATCCCTCCAGGGATGATCACCGAC	AGCGCGTCACCGATCAGCGCGAGGCCGGACAGTGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGTGTGCTCCGGCTGCTGGGTGCAGGTGCAGTGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTACGCCCACGGCCCCGCCACCCTCACCCCGGACGA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AGGGCCAGCCGTACCAGCCGCTGACCTCGCCCGGGGA
GTTGCGATCCCTCCAGGGATGATCACCGAC	CTCGACGAGGTGGGCCAGGAGCCGGCCTGAGCTGCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ATGCCGCGTGGGAGTGGGCGACGCGGGTGACGCAGGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CTGAGCGCGTCGACATCGGCGGGTCGACCGCCAA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACGCGGGGGAGGACTTCGACCTCGACCCGAACTT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCCCCACCGGCAGGCGTCGCTGCATCATCTGCAA
GTTGCGATCCCTCCAGGGATGATCAGCAAC	CAGGAGCCGGCCTGGAGCTGCTCGACGCCGGCCCCGCTCGA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CGGTGTCGTCGGGGATGGCGACGTCGACAGGCTGTC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGTGGTCGTCAGTGCTCGGTCCAGTCTCCGCGCTC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCACACCCGGGTCGGTCGGACCTCGCGCCAGTCAGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCGGCACGGTGGCTATTGGACAAGCCTAGGATCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGACCTGTACGCCGAGCGCGGTCGCGACATCGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCTGCTCGCCATGGACACCGACGCGATGACCAACTT
GTTGCGATCCCTCCAGGGATGATCAGCGAC

>NC_009921|3|4|1674453-1676262|CRT
TCCCTTGGCCCTCCATGGATGATCAGCGAC	CTGGGGCGGACGGGGTCGGCGTGCCCGGTGGATGCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGAAGACGAGCGCCGGGCCCTCAAGCGCCAGGT
GTTGCGATCCCTCCAGGGATGATCAGCGGC	CGCTCCCGCCGAAGCCCACCCCGATCGGCCTGATCCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGTGGGCGATCCCCGGCGGGATGGTGGACCCGGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCAACTTCCCGCACTCTGCGGTCGTCAACGGTCCCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCTACCTCGCCTGCCCCCCGGAAGCCCCTGGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGTAGCCAGGCCGTGAAAGCGCCGGTGACGTACCGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TAGGGGTGTAGGCCACGGCCTCGCCGAGGTGCGCGG
GTTGCGATCCCTCCAGGGATGATCACCGAC	AGCGCGTCACCGATCAGCGCGAGGCCGGACAGTGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGTGTGCTCCGGCTGCTGGGTGCAGGTGCAGTGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTACGCCCACGGCCCCGCCACCCTCACCCCGGACGA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	AGGGCCAGCCGTACCAGCCGCTGACCTCGCCCGGGGA
GTTGCGATCCCTCCAGGGATGATCACCGAC	CTCGACGAGGTGGGCCAGGAGCCGGCCTGAGCTGCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ATGCCGCGTGGGAGTGGGCGACGCGGGTGACGCAGGT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CTGAGCGCGTCGACATCGGCGGGTCGACCGCCAA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACGCGGGGGAGGACTTCGACCTCGACCCGAACTT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCCCCACCGGCAGGCGTCGCTGCATCATCTGCAA
GTTGCGATCCCTCCAGGGATGATCAGCAAC	CAGGAGCCGGCCTGGAGCTGCTCGACGCCGGCCCCGCTCGA
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CGGTGTCGTCGGGGATGGCGACGTCGACAGGCTGTC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGTGGTCGTCAGTGCTCGGTCCAGTCTCCGCGCTC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCACACCCGGGTCGGTCGGACCTCGCGCCAGTCAGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCGGCACGGTGGCTATTGGACAAGCCTAGGATCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGACCTGTACGCCGAGCGCGGTCGCGACATCGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCTGCTCGCCATGGACACCGACGCGATGACCAACTT
GTTGCGATCCCTCCAGGGATGATCAGCGAC

>NC_009921|3|3|1674520-1675209|PILER-CR
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGAAGACGAGCGCCGGGCCCTCAAGCGCCAGGT
GTTGCGATCCCTCCAGGGATGATCAGCGGC	CGCTCCCGCCGAAGCCCACCCCGATCGGCCTGATCCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGTGGGCGATCCCCGGCGGGATGGTGGACCCGGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCAACTTCCCGCACTCTGCGGTCGTCAACGGTCCCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCTACCTCGCCTGCCCCCCGGAAGCCCCTGGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGTAGCCAGGCCGTGAAAGCGCCGGTGACGTACCGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TAGGGGTGTAGGCCACGGCCTCGCCGAGGTGCGCGG
GTTGCGATCCCTCCAGGGATGATCACCGAC	AGCGCGTCACCGATCAGCGCGAGGCCGGACAGTGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGTGTGCTCCGGCTGCTGGGTGCAGGTGCAGTGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTACGCCCACGGCCCCGCCACCCTCACCCCGGACGA
GTTGCGATCCCTCCAGGGATGATCAGCGACAGGGCCAGCCGTACCAGCCGCTGACCTCGCCCGGGGAGTTGCGATCCCTCCAGGGATGATCACCGACCTCGACGAGGTGGGCCAGGAGCCGGCCTGAGCTGCTGTTGCGATCCCTCCAGGGATGATCAGCGAC	ATGCCGCGTGGGAGTGGGCGACGCGGGTGACGCAGG
TGTTGCGATCCCTCCAGGGATGATCAGCGAC	CTGAGCGCGTCGACATCGGCGGGTCGACCGCCA
AGTTGCGATCCCTCCAGGGATGATCAGCGAC	ACGCGGGGGAGGACTTCGACCTCGACCCGAACT
TGTTGCGATCCCTCCAGGGATGATCAGCGACGGCCCCACCGGCAGGCGTCGCTGCATCATCTGCAAGTTGCGATCCCTCCAGGGATGATCAGCAACCAGGAGCCGGCCTGGAGCTGCTCGACGCCGGCCCCGCTCGAGTTGCGATCCCTCCAGGGATGATCAGCGAC	CGGTGTCGTCGGGGATGGCGACGTCGACAGGCTGTC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGTGGTCGTCAGTGCTCGGTCCAGTCTCCGCGCTC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCACACCCGGGTCGGTCGGACCTCGCGCCAGTCAGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCGGCACGGTGGCTATTGGACAAGCCTAGGATCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGACCTGTACGCCGAGCGCGGTCGCGACATCGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCTGCTCGCCATGGACACCGACGCGATGACCAACTT


>NC_009921|3|4|1675312-1675537|PILER-CR
	GCGAAGACGAGCGCCGGGCCCTCAAGCGCCAGGT
GTTGCGATCCCTCCAGGGATGATCAGCGGC	CGCTCCCGCCGAAGCCCACCCCGATCGGCCTGATCCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGTGGGCGATCCCCGGCGGGATGGTGGACCCGGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCAACTTCCCGCACTCTGCGGTCGTCAACGGTCCCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCTACCTCGCCTGCCCCCCGGAAGCCCCTGGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGTAGCCAGGCCGTGAAAGCGCCGGTGACGTACCGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TAGGGGTGTAGGCCACGGCCTCGCCGAGGTGCGCGG
GTTGCGATCCCTCCAGGGATGATCACCGAC	AGCGCGTCACCGATCAGCGCGAGGCCGGACAGTGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGTGTGCTCCGGCTGCTGGGTGCAGGTGCAGTGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTACGCCCACGGCCCCGCCACCCTCACCCCGGACGA
GTTGCGATCCCTCCAGGGATGATCAGCGACAGGGCCAGCCGTACCAGCCGCTGACCTCGCCCGGGGAGTTGCGATCCCTCCAGGGATGATCACCGACCTCGACGAGGTGGGCCAGGAGCCGGCCTGAGCTGCTGTTGCGATCCCTCCAGGGATGATCAGCGAC	ATGCCGCGTGGGAGTGGGCGACGCGGGTGACGCAGG
TGTTGCGATCCCTCCAGGGATGATCAGCGAC	CTGAGCGCGTCGACATCGGCGGGTCGACCGCCA
AGTTGCGATCCCTCCAGGGATGATCAGCGAC	ACGCGGGGGAGGACTTCGACCTCGACCCGAACT
TGTTGCGATCCCTCCAGGGATGATCAGCGACGGCCCCACCGGCAGGCGTCGCTGCATCATCTGCAAGTTGCGATCCCTCCAGGGATGATCAGCAACCAGGAGCCGGCCTGGAGCTGCTCGACGCCGGCCCCGCTCGAGTTGCGATCCCTCCAGGGATGATCAGCGAC	CGGTGTCGTCGGGGATGGCGACGTCGACAGGCTGTC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGTGGTCGTCAGTGCTCGGTCCAGTCTCCGCGCTC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCACACCCGGGTCGGTCGGACCTCGCGCCAGTCAGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCGGCACGGTGGCTATTGGACAAGCCTAGGATCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGACCTGTACGCCGAGCGCGGTCGCGACATCGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCTGCTCGCCATGGACACCGACGCGATGACCAACTT


>NC_009921|3|5|1675644-1676262|PILER-CR
	GCGAAGACGAGCGCCGGGCCCTCAAGCGCCAGGT
GTTGCGATCCCTCCAGGGATGATCAGCGGC	CGCTCCCGCCGAAGCCCACCCCGATCGGCCTGATCCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCAGTGGGCGATCCCCGGCGGGATGGTGGACCCGGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGCAACTTCCCGCACTCTGCGGTCGTCAACGGTCCCT
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCTACCTCGCCTGCCCCCCGGAAGCCCCTGGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GGTAGCCAGGCCGTGAAAGCGCCGGTGACGTACCGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TAGGGGTGTAGGCCACGGCCTCGCCGAGGTGCGCGG
GTTGCGATCCCTCCAGGGATGATCACCGAC	AGCGCGTCACCGATCAGCGCGAGGCCGGACAGTGAC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCGGTGTGCTCCGGCTGCTGGGTGCAGGTGCAGTGCGG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GTACGCCCACGGCCCCGCCACCCTCACCCCGGACGA
GTTGCGATCCCTCCAGGGATGATCAGCGACAGGGCCAGCCGTACCAGCCGCTGACCTCGCCCGGGGAGTTGCGATCCCTCCAGGGATGATCACCGACCTCGACGAGGTGGGCCAGGAGCCGGCCTGAGCTGCTGTTGCGATCCCTCCAGGGATGATCAGCGAC	ATGCCGCGTGGGAGTGGGCGACGCGGGTGACGCAGG
TGTTGCGATCCCTCCAGGGATGATCAGCGAC	CTGAGCGCGTCGACATCGGCGGGTCGACCGCCA
AGTTGCGATCCCTCCAGGGATGATCAGCGAC	ACGCGGGGGAGGACTTCGACCTCGACCCGAACT
TGTTGCGATCCCTCCAGGGATGATCAGCGACGGCCCCACCGGCAGGCGTCGCTGCATCATCTGCAAGTTGCGATCCCTCCAGGGATGATCAGCAACCAGGAGCCGGCCTGGAGCTGCTCGACGCCGGCCCCGCTCGAGTTGCGATCCCTCCAGGGATGATCAGCGAC	CGGTGTCGTCGGGGATGGCGACGTCGACAGGCTGTC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGGCACCCGGAACCGCTCCTGGGCGGCCTGGCG
GTTGCGATCCCTCCAGGGATGATCAGCGAC	TCGTGGTCGTCAGTGCTCGGTCCAGTCTCCGCGCTC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCACACCCGGGTCGGTCGGACCTCGCGCCAGTCAGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	CCGGCACGGTGGCTATTGGACAAGCCTAGGATCGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	ACCGACCTGTACGCCGAGCGCGGTCGCGACATCGGC
GTTGCGATCCCTCCAGGGATGATCAGCGAC	GCTGCTCGCCATGGACACCGACGCGATGACCAACTT
GTTGCGATCCCTCCAGGGATGATCAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009921.1\|WP_083788176.1\|1690152_1691457_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NC_009921.1\|WP_020459010.1\|1681374_1682166_+\|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl\|CDD\|187824
NC_009921.1\|WP_020458997.1\|1662042_1663773_-\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187857
NC_009921.1\|WP_020459003.1\|1673149_1674304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_009921.1\|WP_083788175.1\|1663769_1666409_-\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NC_009921.1\|WP_020459013.1\|1686127_1686391_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009921.1\|WP_157473047.1\|1646970_1649718_+\|SARP-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|198111
NC_009921.1\|WP_020459009.1\|1680319_1681378_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_009921.1\|WP_157472411.1\|1678161_1678875_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_009921.1\|WP_157472409.1\|1670183_1670351_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_085950111.1\|1676490_1677692_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_009921.1\|WP_020458996.1\|1661332_1662046_-\|TIGR03984-family-CRISPR-associated-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
NC_009921.1\|WP_020459012.1\|1684630_1685146_+\|Dna2/Cas4-domain-containing-protein	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009921.1\|WP_157472414.1\|1682162_1684634_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_009921.1\|WP_041253766.1\|1689846_1690089_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_009921.1\|WP_041255607.1\|1668305_1669904_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_157472406.1\|1658211_1659174_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187878
NC_009921.1\|WP_020459002.1\|1671182_1673153_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|378923
NC_009921.1\|WP_157472403.1\|1646397_1646802_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_157473049.1\|1678874_1680320_+\|hypothetical-protein	cas8b2	cls000029_cas8b2_CAS-I-B	unknown

Protein	Function_ID	Function_description	E-value
NC_009921.1\|WP_083788176.1\|1690152_1691457_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.9168e-19
NC_009921.1\|WP_020458997.1\|1662042_1663773_-\|hypothetical-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	1.93702e-18
NC_009921.1\|WP_020459003.1\|1673149_1674304_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	5.76544e-07
NC_009921.1\|WP_083788175.1\|1663769_1666409_-\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	3.97637e-18
NC_009921.1\|WP_020459013.1\|1686127_1686391_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.92124e-27
NC_009921.1\|WP_157473047.1\|1646970_1649718_+\|SARP-family-transcriptional-regulator	gnl\|CDD\|198111	smart01043, BTAD, Bacterial transcriptional activator domain. Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.	1.56871e-06
NC_009921.1\|WP_020459009.1\|1680319_1681378_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	9.98755e-61
NC_009921.1\|WP_157472411.1\|1678161_1678875_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.00488e-17
NC_009921.1\|WP_085950111.1\|1676490_1677692_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26896e-67
NC_009921.1\|WP_020459010.1\|1681374_1682166_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187824	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	6.23634e-18
NC_009921.1\|WP_020459012.1\|1684630_1685146_+\|Dna2/Cas4-domain-containing-protein	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.20477e-61
NC_009921.1\|WP_157472414.1\|1682162_1684634_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	9.88263e-48
NC_009921.1\|WP_041253766.1\|1689846_1690089_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	5.99422e-13
NC_009921.1\|WP_020459002.1\|1671182_1673153_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	1.41055e-29
NC_009921.1\|WP_157472406.1\|1658211_1659174_-\|hypothetical-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	5.24127e-05
NC_009921.1\|WP_020458996.1\|1661332_1662046_-\|TIGR03984-family-CRISPR-associated-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	3.43719e-43

>NC_009921.1|WP_020459003.1|1673149_1674304_+|hypothetical-protein
MTLPSPTAPDNTPFHSFRVAGGSVVLDLPFRPPPGWTVRAATLWPDSRSSFGWSADHWALGPGGRGFVPGLIDVGDVIQFAAESQTPQHELPANIWAPRQTPTAAQPRAIHSWFGYLHGITRTSLIVRGPYPSPEAAYYTAQRALQIDLARTETARELPHPAEPLHPAAPPAAVSLDYHGDAATVGDPYHGWITVPSRDLASALMLPRHELIHRLRGHVPHLSGREPQVTIAALAARHIPTQLPDLLNPPTPTPPPHPPGVPGPSQPTPAGPEGPAAAEPAPSTTEPTATDPPGNRHDVPVTPAAPSAQHHPDGTPGPPVKMHSDPDAATSTPPPAPSAPTADPTPTGAAAGPSPAGPAEAHGLANTGWVPPDLTLSDPGIDLL
>NC_009921.1|WP_020459002.1|1671182_1673153_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MSVERGRFGDAGLDAEIAVVAVALLVASSAAAVWAGAQLAALAFGAHRPLDVGLGDGLAALPQLIADPAHPAHAWPARAAGDLPGQLGYWAATVVPLAVLAMLSGLAAFLLVGDGVGVARRRRMGIDPEARFARPADLAPLWLGGPTRGRMILGRIGGPRGRLVATEDTNRPLDAAVPRWRARRAARRRGQRGSVIVLGPSQCGKTAALAIPAILEWDGPLIALSVKNDLLGATISRRRQVGDVAVFDPAGVTGELGAPWSPLGAARTLAGARRAARSIANATSWTSASSGDMGFWTAAAEDLLGQLFWTAAVVDLGMDTVVSWVVSMDKETVRGLLTPLASHRDPTLAADGTQVLAGFQGIWANDRRQISSTYLVARQMIQPWQEPEIAASATASHLDLEWLLDTGPDGQAANTLYLSADLDDAERLAPVLGGLLDDLMRQAYSHVGRTGVPLDPPLLVVVDEAGNWPMRNLPGRISTCAGIGIQLVLVYQSKAQIDAAYGPKADIVISNAVTKVFFAGQSDRSTLEYAAGLLGQEHVVQTSTNVDSTGLVGPSGRRGVSRSPTRVELLPSALLRQVAPGQALLVHNTLPPAHLFGRYWYLDEDLHALATGHRTSRRDLVRQAARQRITPGNSPDRPPPPTASGDEQSAAPWWPW
>NC_009921.1|WP_157472409.1|1670183_1670351_+|hypothetical-protein
MRVPRGMWVGNKRGNAAGIAVASLRGYDEQDLRGQQSRTQHPSPVCFALPGAVVA
>NC_009921.1|WP_041255607.1|1668305_1669904_-|hypothetical-protein
MNAELLFRNEKSTYTTAIYRAEGTLWGIEGQLGFALPTAVQEILQHAPETRPVKTRISPPSPWIRGTDYQPWRASKVLVPDMPAVTYGFLMNLNGPIRTWEHGPYRIDAVSTTLTFEDEHSPSLQLAYRIWHNERVIFASDTLSVALGSDLESDTTLRRIANHALDGRSARPYTPQREFLTRHGAELRSVLAPPTAPYPIGTRVKVRGLTGTTPASGIITDAILAADGSLHYGWRPDVARLPGHPMGRLLEWQLLAPAQHVQPTLQAPDAALTNTQAPDVLVYGAKIRTIDDPRFATGTVLRAILKPGGQPTYDVQPDDGTPGPVRIHAAHVEPVAGTAWPTVQSLLDARAEAGVPLETGEILVTLREATFVADGPTGPRPALPPQEWPSHDPILDPDSPDIPTPPKRGMPPTIAPPRIVIEDDYVRVYDPRHELLDAPHRIFETALSYPREDLIALLTAVPGLQLGGDESLVTLAALAAQNVPDEINVTLTPDPNGPEREHDLSTRPDPEIANPARPPDEGLDPPDLDPGM
>NC_009921.1|WP_083788175.1|1663769_1666409_-|hypothetical-protein
MAAGLGVRFSSGPRGAGRAGRQPRRSARSGPPRQRRSPALVDAVVRRNGAGRPDGRGEDPVSVDDDTRLVGSPSPPDGPPAALTAESELQIRTLSDWHVGSGARIPGRVNAAVRRDDDGLPYLPGTTLTGVLRDACLTVARGLDDGARDGTWEAWHQVLFGELATEGRGRAGRWLRPAALGVGAGRLSAGLRARLIDDPALRRETTFVKPGVRIDPETGRATDDMLRFVEMARVGLPLTAAVHIDLPEARSMVDDRSPVDEMWRAVTALLVLGAAWCERVGGDRRRGAGWVVLRWAGQDPAVWAEWLSRSGWTPEEPPATEPAAASVMSPPVPPDPPDPSPEARVASGSDSAAAEPVRLELRLTCVAPVRVPRQVIGNITLGHDHIPGAALLSWLSARWGDRVVRAAVASDDLLVRHAYPEIAGRRGLPAPLCLFRVRRTGELVNAARVQLPGEPARQVRDRWTVPDPVGDGVVLVETPLGAATHNAVSRSTQRPDSPAGLYAVEVLPAGTRLRTELVVSGRVVDQLAATFGARWWEPLLGQTRMGARRKGEYGLVQVDTVSPEGPTVCAPVTGRVCAGPPSLGGEFQVWAAADLVVSSRSLRQTGDPEDVRAALTTRLDGGGLRLGWAAQDGRLACVTRTRRRDSWQGRWQLPRESIVGLAAGSVLTLRVEDGAIDPAAWADLADRGLGERRAEGFGEVVIDAPLLDLAHLRAAEPAAAADDRTGEDRSGEQLSEAEQAALHHLRGSAVVSACRARLIELREQPDPPAGYAALRRGLRAMSPSQRSTWLTLANDAVLRAADTRLRAECARWTAREDRDRDTQRRLAECTLGLLDGGIEEVAGSGPLDAQLRREVFALLVGDLMDAARRPAAADTSDRP
>NC_009921.1|WP_020458997.1|1662042_1663773_-|hypothetical-protein
MTAAAATRSAAETPEVNAGDPPSSPTGVLGEVETRIDWTLTLLAETAVAVGGAYAGDTTDLTIARDGLGRPYIPGTSWAGVLRSVAGRVGLSPAAVRAVFGHQENGRSETSDAGWASLVTVHDTVVTDTGLELRTGVGIDRVTGAAADRIRFDREVLPAGTSVTLRLRYEGPAGAGPEAVRTLLGAVRADGVAVGGSTRRGLGRFRCLTVTERTVDLRSRADLLAWFQGSATESEILPRQVDTSRLHLDVSWRPIRPVVVATGTPADGAHLVPVMARTATGDGLVPILPATSVKGVLRSLAERIARTVLADAAPAPSTATEDDDVDGDANDGGDGAPAADFVGTMDAFALRVPAIEALFGSRRRAGALWVADTAAQAPIIDPQAWADHLAGQPSTADGDTAEPDGGRPGWDRVRTHVAIDRWTGGTADQQLFTVQELAGVRWPALRLEVDLPALHRALARPAAEDRDAAAGDDDGSHRDRVRAALVLLGCALGVLLDGDTGFGHGTTRGLGEVEVTGLRVRMPADGDLPGCPDLSGANPDELREMWWMWLDDLAPRQGWVPALRPVPDGADVRTAP
>NC_009921.1|WP_020458996.1|1661332_1662046_-|TIGR03984-family-CRISPR-associated-protein
MTSGTLPDGTGSSGTVSIGAQPDSSVRLLVAHAPTSVTAQDVVALAGLLGQPCVGLLSSPTAHTVVRCHDGAAAAPDGPADLDGVFALRLFSPLGELRWLQTGGGRGTAVLLTETLPPPDGWPAHEEAVAAALDGRYALWGRRFVAHPDTAGWFRALEGRIGYLDVPAPTPASDPLPTGSQAGPPTEPGLWPAAYLQLRTREYLGRDDTGNAEVREERLLEITVADPEFGRSERTST
>NC_009921.1|WP_157472406.1|1658211_1659174_-|hypothetical-protein
MVRRERTRRRSPGQARREHGEKPAGSRQVPPPGRPLPTAPARPGPPLAGPHRGEGLPMTTPASRGGWRRALVALGTSYRGSQAYLQSALVALLLAPVLPDILIDLTGVEGKATAGVRLGGVALVAAACVAVFAVQNRRHRRDLARIGTLTSNVQPHDTLIIALSLRAGPQYQPRALRTGRLPSILEILVDRITPKTVILLRSPDVPDDAWTQTRDGLTSDGLQTGLLAVPNCEDPVDFVAYVNRALSRGPSGGAVYDLTSVAVDVTGGTKLMSLAMARLAAELDASCVYVTKAFRDADTIEPGTQIPYQFDPRQIVNAGP
>NC_009921.1|WP_157473047.1|1646970_1649718_+|SARP-family-transcriptional-regulator
MIPLVLWMWRDVPLPSTWEPARWLTLARRGYLHPDIVPNTVAVLIWIAWGQVALALLREIAAQFQRGASATRTVLLPGVVQHLAGSWIASLSILFSLLAGRSAMVAVSLDLPASHPAAGSVQTIAANAAEPMGGPAPSTSAGNALPANGMPTEGTDPGGTTWRRHVVAPGETLWGIVGGEYDDLEPDAFPPAVAEVFETNRGTTDSLGRALDRPDLINPGMELRLPQLSTGQLPGGTYTAPQPISPPAPAPAPAPPAPTPAPASPASPASPRASASPPVTVPHDVPAVPPGDEPEVPLSTWIGGAGLLATTLVGLWAARRRRRDSTVTPAQEIPDPDPATAALHAALLDADDPDLLDRLDAALRSIGAAHRDQPDGPSPQILLVQPDQSIEVLLHPDGAQTLPPPWDAGPDPRIWTLPATAALTAAADIPPPCPALVQLGTTAAGAALYADLEALGTLGIATSPTDPNRLADFCRAILAAIVASPWADLTTVRTVGLDPHAFAAEERVQAAKDVTELTDDARAEAAAIDTVLRERGYPSTLNARIAEPGEEFDPTIALLATHLDTDAGRTEAADLAAAAGHGRRGLAVVLPAQPDILTAWMLRPDPAGRGSRLDPLGVLLTPVGLTDTDEAAVAAFIADAEAPPIDLPPPDPPAETPAVFVSPPWEVMVRLLGPIDITTRDGRTPPRAETRERTNEVLAWLVTHRHGTRTDLESALWPRGAKSKTLANVLARARRLLINLVGEDAKNWVPRYDRGPLTLDPRVVSDLDILQALLRHAIDQRDHHETAIATLQEALKLVRGVPVGYPWLDAQMGSILTTAPVNAAILLAEHQLAAGDTAGVLATTARGMEILPAHTTLFALRMRAHAAAGDPDAVKAEYRSYLRAEKAEPLWDGETDRDLEALHYKLTRRRTAGSG
>NC_009921.1|WP_157472403.1|1646397_1646802_+|hypothetical-protein
MAPGADEGSISLFLCVVLFGASLLFAALLSDQARVLHANGQAFDLAGSAARVGAQQLDPTALAAGAVQVDPRAATSAVHAYLAAHDVTDIRVTATEATVTVTLTQHVAFRIPILSSASGADITQTRSATATAGP
>NC_009921.1|WP_085950111.1|1676490_1677692_+|IS3-family-transposase
MTQRRRKFSPEFKDEAVKMVIETSRPISQVAVELGILEGTLGTWVAAYRRAHADEEPPPTVDERARLRELERQNRELRMENEFLKKAAGVLRQGSSVSDTFEFIDAEYAARTTTNTSAPAPSVIQMCAWLSVSRSGFYEWRDRPASATATRRGALATLVVRSFTASDGTYGYRRVHSDLLAWGRPCSPELVRALMREQGLVPCQPRPWRHTLTEPGQTPAAIPDLLQRDFTADTPGTKMVGDITYIPTWEGWLYLATVIDCHTKAVIGWAMDDNYKTGLIETAITMAARNHQLTDGAIFHSDRGSNYTSTQFAATLKNLGIRQSVGRTGICYDNAMAESFFAALKNERVHRTAYPTREHARRDIARYIELRYNTTRRHSGLDYRTPQQVHDEYLKRQTAA
>NC_009921.1|WP_157472411.1|1678161_1678875_+|CRISPR-associated-endoribonuclease-Cas6
MSLLPGVSVRFRVDVGADKATIPWRDVFGPARAVAYELIRGQDADLAEELHGRGYAGSSLRPLGLSSPYFRGPARGHDVYRASKDGTVWFGSPVPRIAGALLAGLAGRRQLRWGSVELDVHGVQLESTPDHSSGETVFSTVTPVLARYEDRYIFPDHPAFVATLVHNLSHKADVLGLPNEVEFEVLSAGPPRKFFVQHTPRHGCVVRARVHAAPALLDALYDWGLGLGTNQGFGWIR
>NC_009921.1|WP_157473049.1|1678874_1680320_+|hypothetical-protein
MVLARTRLSPRGGLLSLTEHPLQRAGAWAIAVLAGRERPSEVTAADLDEVAGRITADVVRAAVAGKDYTAYDWWKVLFAMFPNSEPTHAGRPRDREALIGTVARFFLPDLEGESARPCCFCGAAASVLWSKKMLPLFDSTKAVNTLPPATAGWPVCRGCRIAWWAMPYGANVTAGSATVLSCDEEAVERAFAAAGCVRTARVRSVGFSSLSADASPEAVTLWVLRDHASSSRPVAATLWSFKNDNQEPWLRVSETRIAVVGFLRALPADPEAHRGWRTLQRQCNRVDRKGTVVRLGRDVVARALFDSVNFPPDQLCRELSHQVDDLGRVSASTIRAWRALYALYLKEMYGMDRKALEPVTTLLVDWIGAEKNPRGRFNEYRKVAGRGFDLQVLLMGACARLYLDGQKPPDVTRITEHLLASGQEGHRLRGQLFFEVVAELVGRGVEIGARTTGAATEAGTETEADGPLVGVDADEDEEAYV
>NC_009921.1|WP_020459009.1|1680319_1681378_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MAYLAGKIVVPVEAGAPNNGRGEATTGRVKKTRIRGATYPYVSAQAFRRWVRDTMTASGSVPSPTVRVGKAQNKAQKATTAADPIQYADDDLFGFMKAGAKDDAPTTVRDSPFMVGTLLSVEKVWLTEDFGVMSRGIPEPVLHGHEFYTADLAAPFLLDVPRVGTFTLPGTGGSGRPNYLTEKDALSMAEAVRAGATSVTFRGSSAVRLPLPARRERVAVLLDALAELAGGAKQALHYGDRSAALFALVPMAGGVNPLGFVIGGAEDGSGLRVSGEVLREELAAWEGEYEPPVLIGWRPGFRDELRKQFEEEVADEVDRGAVLIGHPRTVLLDLARRVRGGDHDGWFDDPTR
>NC_009921.1|WP_020459010.1|1681374_1682166_+|CRISPR-associated-protein-Cas5
MSGHLGTTMTVRAPDGRTPVDVLRVDLYAPVASFRDPMFPRVARCLPVPPPSTVRGMLAASSGRAHELVVLGMAASSSGQGVDLETYHPIAADGSNPAVGGRVRTVKGGATVRERPFLTDVRLTLWIPEPDGRRLEATLRRPVWGLRLGRSQDLVQIVGTPRWTVLHPVDEATDEVRVGHALAPPDGHRAREAVSLRLAETVSVDRLRTEYGSYLWCREPAGRQRVGGAAYRDGDQAVWLFGATDPAEHPERSAAGLGNEVDG
>NC_009921.1|WP_157472414.1|1682162_1684634_+|CRISPR-associated-helicase-Cas3'
MTAELNQVLAKSVGRSATGRAELLTEHSAAVRDAARRVAERIGPAGPIAAEPRFWTWVEQAALLHDAGKVAEGFQRQVRPRGTVWGERHEILSLAYVNLLIGGPAEQDRLMAAAGVAFHHRSLTVSGGHGTGLAASYPQNADWERRFGRDPDAPRGARIQVTPPRHRELIAWFTGELGSAPLPPDGRKLWEHARELFLATHDTWIDGVPANRGLLAVLLQGAVTLADHSGSAHVPLQRHMPLPRGFLHRLEQPYGHQRAAAASGSHLILVAPTGSGKTEAGLAWASAQLENMPGEPRLVWVLPYRASIDAAADRFTRDLDPPSDPCPEPGESSEYPSTVVARSPDIGVLHATAAATLLTRAVADDCPPSPASARKARARAQAMRLFAQRVRVATPHQLLRAAIAGPRYSSVLLEQANALFVLDELHAYDPETFGRICAALGMWDHLGSRIAVLSATLAKPMIDLVEDSLGGHVDLVRAPAGTAPDRHRLVLDEQPITAPDNLRAISRWMTEGHSVLVVANTVRVAQQLFQALAPAAREAWPDDPDAAILLHSRFKGRDRARIEHRITTRHPERSAGDPALRQGGLVVSTQVLEVSLCLDFDRGVSELAPIEAVAQRAGRVNRRGRHPDGPVEFRVHRTDSALPYQEESLDAAWAAMRHTAAGAQAISEQTVEDWLDHVYSTPWGEQWAATARQARDAFAASFLTFHRPFEDRSEFARSLDENFDTVQVLHRDDEAEYRTLADTDDGDPLLAEGLLIPLRWPQLARLRRDGHAADNRTLRLAVVDAPYDPLTGLGLDLENSPAGGAGPARRGGTRETETVETIL
>NC_009921.1|WP_020459012.1|1684630_1685146_+|Dna2/Cas4-domain-containing-protein
MKSAPVHHDHGLGGVHIKYLLHCPRQLWLYMRGYRPEATSDLVAFGEIVDDTTYTRRRDVDLGQAKIDWVTTGAVIHETKSSRTPSPAHEAQVRHYCLLLERRGVHVRGGTIHYPLIRRTVPVTWDDAARGQALDTEKQAAAVISAPAAPPRLERRRCRGCSYLDYCWGQT
>NC_009921.1|WP_020459013.1|1686127_1686391_+|CRISPR-associated-endonuclease-Cas2
MFVILVYDTAAERNPLVLRTCRKYLHWVQRSVFEGELSAAQYRALTAALKTELDLSYDSIRIYRTRTPHLVETEWLGQQMGNQDSIL
>NC_009921.1|WP_041253766.1|1689846_1690089_+|helix-turn-helix-domain-containing-protein
MGERVDRDNLGEGAARASGRRRLWTIDDLANFLGVPVATVYKWRHAGEGPPGYRIGRYLRFDEKEVMDWLETRRSTPGED
>NC_009921.1|WP_083788176.1|1690152_1691457_-|tyrosine-type-recombinase/integrase
MRTSRRLPSIVIIVRRFMALFWYHQTRSGAAQIAWSVSMPRTGRPPLGLGTYGEIRVYKMDSGRYKARTLYRDFDGVTRPVARNGASKNAAETALKNHLRDRVREAGAEAEITAGSTVEVLAEAWWAEFSKQDKSPGTFRLYRDRLDNQIIPALGKIRIRELTTGAANRHISTVSQNNGAGVAKATRTVLSNMCAFACQRDVMKTNPIREVAPVRPKAKKVPKALSVAELQQLRALFTYDPAAVRRDIPMLSSILLATGVRIGECLAFVEDALDPKEGSIEVRGTVIWLKGVGPIVKPAPKSAAGFRRLLLPKWAVNLLRSRFEESAVISKPVPVLNGEAWDSPLAFPTSTGRLRDITNVESYWREAVTTAGFDWVVPHTFRKTVATEMDRAGRTAREIADQLGHSQITLVHNTYLGRKARDTGAAAALEGLVA

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Crispr_ID: NC_009921_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009921_4

1686503-1689446

Unclear

Consensus_repeat	Method
GTTGCGATCCCTCCAGGGATGATCAGCGAC	PILER-CR
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CRISPRCasFinder
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CRT

44 spacers

cas2,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_009921_4

>merge|NC_009921|4|1686503-1689446|PILER-CR,CRISPRCasFinder,CRT
GTCGCTGATCATCCCTGGAGGGATCGCAACGTCCGGTCCCAGTCCCGGACGGTCACCGTGACCCGCGAGGTCGCTGATCATCCCTGGAGGGATCGCAACACGAGGCTGCGTCCGCTCACGGCGGCGGCGAGCAGGAGGTCGCTGATCATCCCTGGAGGGATCGCAACTGGGAGCGCAGGCATGATCCCGTTCCCGGAGCCTCCCGGGGTCGCTGATCATCCCTGGAGGGATCGCAACCCCGGTTGCACCGGGCGGGGCTGACCAACCCACCCCGGGTCGCTGATCATCCCTGGAGGGATCGCAACTCGCGGAGCTGGTCGACGTCCCCGCTCGCCCGCCGGGGGTCGCTGATCATCCCTGGAGGGATCGCAACATGGTGACGTTGGCCATGTCGGCGCGGGCGGCCACGGTCGCTGATCATCCCTGGAGGGATCGCAACTCTGTCCGATCCCGAGCAGGTCCAGCCCGAGCGGCAGGGTCGCTGATCATCCCTGGAGGGATCGCAACGTGAGAGCCGGCGGGCAGGCAACCCGGTCCGGCATGGTCGCTGATCATCCCTGGAGGGATCGCAACCCAACTATCCGGCGGCTCGCCAACCCCTCGCCAACTAGGTCGCTGATCATCCCTGGAGGGATCGCAACCCGAGCTGTGGCGGTTCGCGTCCGAGTACACCCGGCGGTCGCTGATCATCCCTGGAGGGATCGCAACAACGGTGCGCAGGTGCGTCCAGCCACGGGTCTGGTAGGTCGCTGATCATCCCTGGAGGGATCGCAACGGCGCCGGGCCGGGGCGTCAGACCGGCGCCCCTTGGTCGCTGATCATCCCTGGAGGGATCGCAACTGGTCCTGGTCCTGGTGCTTGTCGCCGTGGCCGCACGGTCGCTGATCATCCCTGGAGGGATCGCAACGCGCGAGACTGCGCGCCACCGTGAGGCGGGTCTCGTAGGTCGCTGATCATCCCTGGAGGGATCGCAACCCGGCGAGGTGCCGGCCTCGCCTGCCAGGGTGACGCGGTCGCTGATCATCCCTGGAGGGATCGCAACATGGTGTCGCTGGTGATCTGCTTGACGGTCAGAGTGGGTCGCTGATCATCCCTGGAGGGATCGCAACAAGGTGACGCAGGACGATGCGTACTGGCGGACCTGGGTCGCTGATCATCCCTGGAGGGATCGCAACCGGATGTCGACGACGACCTGCCAGCGGCCGGCGTGTCACTGATCATCCCTGGAGGGATCGCAACTCGACCGGGGCCCTCTTCCGTGCGTGGGAGTCAGGCGGTCGCTGATCATCCCTGGAGGGATCGCAACCGGATGTCGACGACGACCTGCCAGCGGCCGGCGTGTCGCTGATCATCCCTGGAGGGATCGCAACTCGACCGGGGCCCTCTTCCGTGCGTGGGAGTCAGGCGGTCGCTGATCATCCCTGGAGGGATCGCAACGCGCCTTTCTAATGGATCGCGAGGTGGATGTTCTCGGGGTCGCTGATCATCCCTGGAGGGATCGCAACATGAGCTGTGGTGCGATGTTGTCCCGCTCTTCGTGGTCGCTGATCATCCCTGGAGGGATCGCAACTCGCGGCACAGGGCGCGGTGACGCCAATCCATGATCGTCGCTGATCATCCCTGGAGGGATCGCAACTACCAGGCGCGCTTGCCGCAGAGGGACTTCCCGGGGTCGCTGATCATCCCTGGAGGGATCGCAACGTGAAGGTCGGGCTGGATGCCTGCGGTGCCTCGGGTCGCTGATCATCCCTGGAGGGATCGCAACCGCATCTGGGCGCTGTGGCCGCCAGAGAGCGGGACTGGTCGCTGATCATCCCTGGAGGGATCGCAACTTCGACGCCGACATCTCGGTGACGTACAAGCTGCGCCGTCGCTGATCATCCCTGGAGGGATCGCAACACCTCATACCACCTGAGTTCGCGCATTGAACCTCCCTCGTCGCTGATCATCCCTGGAGGGATCACAACAACAGCTCCTGAATCTTCTCGTCAGGGAACTCTTGTCGCTGATCATCCCTGGAGGGATCGCAACAGCAGCCGGTAGTAGTGCGCGACGTGGCCGACCCTGTCGCTGATCATCCCTGGAGGGATCGCAACGCGGCAGATATCACACGATCAGGATTCCGGCCTGGGTCGCTGATCATCCCTGGAGGGATCGCAACGCCGGATCCCAAATGTCGCCGTCGCCGTCGCCGTGTCGCTGATCATCCCTGGAGGGATCGCAACAGGAAAGAAGTCGGGAGGACCCCACAAGGAAGCCCGGTCGCTGATCATCCCTGGAGGGATCGCAACCCGTGTCGCGCCCGACGGAGTGCCCGGGCGGAGCGCGTCGCTGATCATCCCTGGAGGGATCGCAACATGGCCCTGGTGTACTGCTCCGCCCGCTTGGCGGGTCGCTGATCATCCCTGGAGGGATCGCAACCGCTTCCACGGCTCCATCCGACCGTCCCCTCATGCCGTCGCTGATCATCCCTGGAGGGATCGCAACCAGGTGGTCATCCCCGCGCGGGCCTCCTGCTGGGGTCGCTGATCATCCCTGGAGGGATCGCAACAGCGCATCGCGGATGGTCCGCCACACGACGTCTTCGGTCGCTGATCATCCCTGGAGGGATCGCAACACGTCGCAGGGCGCGGTCTCGACCGTCGCGTAGCCCGTCGCTGATCATCCCTGGAGGGATCGCAACAAGAATGCAGCTCGCGACCAACGTAAAGGCATCTGACGTCGCTGATCATCCCTGGAGGGATCGCAACGCTGCTCACAGCACTCTCCTTGGAGTCGGTGGGGGTCGCTGATCATCCCTGGAGGGATCGCAACAATTTCTGCTCCAGGTCTTCCATCTGCTGGCGGAGTCGCTGATCATCCCTGGAGGGATCGCAACTCGTGCTCCCAGAGGCTTACCTGCTTGACGCGCTGGGTCGCTGATTACCCCTGAAGGGATCGCACG

>NC_009921|4|6|1686503-1689380|PILER-CR
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GTCCGGTCCCAGTCCCGGACGGTCACCGTGACCCGCGAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ACGAGGCTGCGTCCGCTCACGGCGGCGGCGAGCAGGAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TGGGAGCGCAGGCATGATCCCGTTCCCGGAGCCTCCCGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCCGGTTGCACCGGGCGGGGCTGACCAACCCACCCCGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCGCGGAGCTGGTCGACGTCCCCGCTCGCCCGCCGGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGGTGACGTTGGCCATGTCGGCGCGGGCGGCCACG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCTGTCCGATCCCGAGCAGGTCCAGCCCGAGCGGCAGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GTGAGAGCCGGCGGGCAGGCAACCCGGTCCGGCATG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCAACTATCCGGCGGCTCGCCAACCCCTCGCCAACTAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCGAGCTGTGGCGGTTCGCGTCCGAGTACACCCGGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AACGGTGCGCAGGTGCGTCCAGCCACGGGTCTGGTAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GGCGCCGGGCCGGGGCGTCAGACCGGCGCCCCTTG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TGGTCCTGGTCCTGGTGCTTGTCGCCGTGGCCGCACG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCGCGAGACTGCGCGCCACCGTGAGGCGGGTCTCGTAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCGGCGAGGTGCCGGCCTCGCCTGCCAGGGTGACGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGGTGTCGCTGGTGATCTGCTTGACGGTCAGAGTGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AAGGTGACGCAGGACGATGCGTACTGGCGGACCTGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGGATGTCGACGACGACCTGCCAGCGGCCGGCGT
GTCACTGATCATCCCTGGAGGGATCGCAAC	TCGACCGGGGCCCTCTTCCGTGCGTGGGAGTCAGGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGGATGTCGACGACGACCTGCCAGCGGCCGGCGT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCGACCGGGGCCCTCTTCCGTGCGTGGGAGTCAGGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCGCCTTTCTAATGGATCGCGAGGTGGATGTTCTCGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGAGCTGTGGTGCGATGTTGTCCCGCTCTTCGTG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCGCGGCACAGGGCGCGGTGACGCCAATCCATGATC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TACCAGGCGCGCTTGCCGCAGAGGGACTTCCCGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GTGAAGGTCGGGCTGGATGCCTGCGGTGCCTCGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGCATCTGGGCGCTGTGGCCGCCAGAGAGCGGGACTG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TTCGACGCCGACATCTCGGTGACGTACAAGCTGCGCC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ACCTCATACCACCTGAGTTCGCGCATTGAACCTCCCTC
GTCGCTGATCATCCCTGGAGGGATCACAAC	AACAGCTCCTGAATCTTCTCGTCAGGGAACTCTT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AGCAGCCGGTAGTAGTGCGCGACGTGGCCGACCCT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCGGCAGATATCACACGATCAGGATTCCGGCCTGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCCGGATCCCAAATGTCGCCGTCGCCGTCGCCGT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AGGAAAGAAGTCGGGAGGACCCCACAAGGAAGCCCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCGTGTCGCGCCCGACGGAGTGCCCGGGCGGAGCGC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGGCCCTGGTGTACTGCTCCGCCCGCTTGGCGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGCTTCCACGGCTCCATCCGACCGTCCCCTCATGCC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CAGGTGGTCATCCCCGCGCGGGCCTCCTGCTGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AGCGCATCGCGGATGGTCCGCCACACGACGTCTTCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ACGTCGCAGGGCGCGGTCTCGACCGTCGCGTAGCCC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AAGAATGCAGCTCGCGACCAACGTAAAGGCATCTGAC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCTGCTCACAGCACTCTCCTTGGAGTCGGTGGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AATTTCTGCTCCAGGTCTTCCATCTGCTGGCGGA
GTCGCTGATCATCCCTGGAGGGATCGCAAC

>NC_009921|4|6|1686503-1689446|CRISPRCasFinder
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GTCCGGTCCCAGTCCCGGACGGTCACCGTGACCCGCGAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ACGAGGCTGCGTCCGCTCACGGCGGCGGCGAGCAGGAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TGGGAGCGCAGGCATGATCCCGTTCCCGGAGCCTCCCGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCCGGTTGCACCGGGCGGGGCTGACCAACCCACCCCGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCGCGGAGCTGGTCGACGTCCCCGCTCGCCCGCCGGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGGTGACGTTGGCCATGTCGGCGCGGGCGGCCACG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCTGTCCGATCCCGAGCAGGTCCAGCCCGAGCGGCAGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GTGAGAGCCGGCGGGCAGGCAACCCGGTCCGGCATG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCAACTATCCGGCGGCTCGCCAACCCCTCGCCAACTAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCGAGCTGTGGCGGTTCGCGTCCGAGTACACCCGGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AACGGTGCGCAGGTGCGTCCAGCCACGGGTCTGGTAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GGCGCCGGGCCGGGGCGTCAGACCGGCGCCCCTTG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TGGTCCTGGTCCTGGTGCTTGTCGCCGTGGCCGCACG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCGCGAGACTGCGCGCCACCGTGAGGCGGGTCTCGTAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCGGCGAGGTGCCGGCCTCGCCTGCCAGGGTGACGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGGTGTCGCTGGTGATCTGCTTGACGGTCAGAGTGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AAGGTGACGCAGGACGATGCGTACTGGCGGACCTGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGGATGTCGACGACGACCTGCCAGCGGCCGGCGT
GTCACTGATCATCCCTGGAGGGATCGCAAC	TCGACCGGGGCCCTCTTCCGTGCGTGGGAGTCAGGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGGATGTCGACGACGACCTGCCAGCGGCCGGCGT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCGACCGGGGCCCTCTTCCGTGCGTGGGAGTCAGGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCGCCTTTCTAATGGATCGCGAGGTGGATGTTCTCGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGAGCTGTGGTGCGATGTTGTCCCGCTCTTCGTG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCGCGGCACAGGGCGCGGTGACGCCAATCCATGATC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TACCAGGCGCGCTTGCCGCAGAGGGACTTCCCGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GTGAAGGTCGGGCTGGATGCCTGCGGTGCCTCGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGCATCTGGGCGCTGTGGCCGCCAGAGAGCGGGACTG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TTCGACGCCGACATCTCGGTGACGTACAAGCTGCGCC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ACCTCATACCACCTGAGTTCGCGCATTGAACCTCCCTC
GTCGCTGATCATCCCTGGAGGGATCACAAC	AACAGCTCCTGAATCTTCTCGTCAGGGAACTCTT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AGCAGCCGGTAGTAGTGCGCGACGTGGCCGACCCT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCGGCAGATATCACACGATCAGGATTCCGGCCTGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCCGGATCCCAAATGTCGCCGTCGCCGTCGCCGT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AGGAAAGAAGTCGGGAGGACCCCACAAGGAAGCCCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCGTGTCGCGCCCGACGGAGTGCCCGGGCGGAGCGC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGGCCCTGGTGTACTGCTCCGCCCGCTTGGCGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGCTTCCACGGCTCCATCCGACCGTCCCCTCATGCC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CAGGTGGTCATCCCCGCGCGGGCCTCCTGCTGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AGCGCATCGCGGATGGTCCGCCACACGACGTCTTCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ACGTCGCAGGGCGCGGTCTCGACCGTCGCGTAGCCC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AAGAATGCAGCTCGCGACCAACGTAAAGGCATCTGAC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCTGCTCACAGCACTCTCCTTGGAGTCGGTGGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AATTTCTGCTCCAGGTCTTCCATCTGCTGGCGGA
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCGTGCTCCCAGAGGCTTACCTGCTTGACGCGCTGG
GTCGCTGATTACCCCTGAAGGGATCGCACG

>NC_009921|4|5|1686503-1689446|CRT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GTCCGGTCCCAGTCCCGGACGGTCACCGTGACCCGCGAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ACGAGGCTGCGTCCGCTCACGGCGGCGGCGAGCAGGAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TGGGAGCGCAGGCATGATCCCGTTCCCGGAGCCTCCCGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCCGGTTGCACCGGGCGGGGCTGACCAACCCACCCCGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCGCGGAGCTGGTCGACGTCCCCGCTCGCCCGCCGGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGGTGACGTTGGCCATGTCGGCGCGGGCGGCCACG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCTGTCCGATCCCGAGCAGGTCCAGCCCGAGCGGCAGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GTGAGAGCCGGCGGGCAGGCAACCCGGTCCGGCATG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCAACTATCCGGCGGCTCGCCAACCCCTCGCCAACTAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCGAGCTGTGGCGGTTCGCGTCCGAGTACACCCGGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AACGGTGCGCAGGTGCGTCCAGCCACGGGTCTGGTAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GGCGCCGGGCCGGGGCGTCAGACCGGCGCCCCTTG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TGGTCCTGGTCCTGGTGCTTGTCGCCGTGGCCGCACG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCGCGAGACTGCGCGCCACCGTGAGGCGGGTCTCGTAG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCGGCGAGGTGCCGGCCTCGCCTGCCAGGGTGACGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGGTGTCGCTGGTGATCTGCTTGACGGTCAGAGTGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AAGGTGACGCAGGACGATGCGTACTGGCGGACCTGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGGATGTCGACGACGACCTGCCAGCGGCCGGCGT
GTCACTGATCATCCCTGGAGGGATCGCAAC	TCGACCGGGGCCCTCTTCCGTGCGTGGGAGTCAGGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGGATGTCGACGACGACCTGCCAGCGGCCGGCGT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCGACCGGGGCCCTCTTCCGTGCGTGGGAGTCAGGCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCGCCTTTCTAATGGATCGCGAGGTGGATGTTCTCGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGAGCTGTGGTGCGATGTTGTCCCGCTCTTCGTG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCGCGGCACAGGGCGCGGTGACGCCAATCCATGATC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TACCAGGCGCGCTTGCCGCAGAGGGACTTCCCGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GTGAAGGTCGGGCTGGATGCCTGCGGTGCCTCGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGCATCTGGGCGCTGTGGCCGCCAGAGAGCGGGACTG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TTCGACGCCGACATCTCGGTGACGTACAAGCTGCGCC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ACCTCATACCACCTGAGTTCGCGCATTGAACCTCCCTC
GTCGCTGATCATCCCTGGAGGGATCACAAC	AACAGCTCCTGAATCTTCTCGTCAGGGAACTCTT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AGCAGCCGGTAGTAGTGCGCGACGTGGCCGACCCT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCGGCAGATATCACACGATCAGGATTCCGGCCTGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCCGGATCCCAAATGTCGCCGTCGCCGTCGCCGT
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AGGAAAGAAGTCGGGAGGACCCCACAAGGAAGCCCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CCGTGTCGCGCCCGACGGAGTGCCCGGGCGGAGCGC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ATGGCCCTGGTGTACTGCTCCGCCCGCTTGGCGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CGCTTCCACGGCTCCATCCGACCGTCCCCTCATGCC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	CAGGTGGTCATCCCCGCGCGGGCCTCCTGCTGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AGCGCATCGCGGATGGTCCGCCACACGACGTCTTCG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	ACGTCGCAGGGCGCGGTCTCGACCGTCGCGTAGCCC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AAGAATGCAGCTCGCGACCAACGTAAAGGCATCTGAC
GTCGCTGATCATCCCTGGAGGGATCGCAAC	GCTGCTCACAGCACTCTCCTTGGAGTCGGTGGGG
GTCGCTGATCATCCCTGGAGGGATCGCAAC	AATTTCTGCTCCAGGTCTTCCATCTGCTGGCGGA
GTCGCTGATCATCCCTGGAGGGATCGCAAC	TCGTGCTCCCAGAGGCTTACCTGCTTGACGCGCTGG
GTCGCTGATTACCCCTGAAGGGATCGCACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009921.1\|WP_083788176.1\|1690152_1691457_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NC_009921.1\|WP_020459023.1\|1701900_1702371_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020459003.1\|1673149_1674304_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_009921.1\|WP_020459013.1\|1686127_1686391_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_009921.1\|WP_020459015.1\|1691726_1692458_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|270923
NC_009921.1\|WP_020459009.1\|1680319_1681378_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_009921.1\|WP_157472411.1\|1678161_1678875_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_009921.1\|WP_020459020.1\|1696694_1697351_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_009921.1\|WP_085950111.1\|1676490_1677692_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_009921.1\|WP_020459010.1\|1681374_1682166_+\|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl\|CDD\|187824
NC_009921.1\|WP_083788177.1\|1700586_1701657_-\|transposase	unknown	unknown	gnl\|CDD\|372671
NC_009921.1\|WP_020459012.1\|1684630_1685146_+\|Dna2/Cas4-domain-containing-protein	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_009921.1\|WP_157472414.1\|1682162_1684634_+\|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_009921.1\|WP_041253766.1\|1689846_1690089_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_009921.1\|WP_020459017.1\|1693341_1694673_-\|tetratricopeptide-repeat-protein	unknown	unknown	unknown
NC_009921.1\|WP_020459002.1\|1671182_1673153_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	unknown	unknown	gnl\|CDD\|378923
NC_009921.1\|WP_020459019.1\|1695801_1696719_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|270690
NC_009921.1\|WP_020459018.1\|1694948_1695716_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020459016.1\|1692610_1693345_-\|2'-5'-RNA-ligase-family-protein	unknown	unknown	gnl\|CDD\|379265
NC_009921.1\|WP_157473049.1\|1678874_1680320_+\|hypothetical-protein	cas8b2	cls000029_cas8b2_CAS-I-B	unknown

Protein	Function_ID	Function_description	E-value
NC_009921.1\|WP_083788176.1\|1690152_1691457_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.9168e-19
NC_009921.1\|WP_020459003.1\|1673149_1674304_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	5.76544e-07
NC_009921.1\|WP_020459013.1\|1686127_1686391_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.92124e-27
NC_009921.1\|WP_020459015.1\|1691726_1692458_+\|phosphotransferase	gnl\|CDD\|270923	cd14021, ChoK-like_euk, Euykaryotic Choline Kinase and similar proteins. This group is composed of eukaryotic choline kinase, ethanolamine kinase, and similar proteins. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate and displays negligible activity towards N-methylated derivatives of Etn. ChoK plays an important role in cell signaling pathways and the regulation of cell growth. The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	6.80916e-09
NC_009921.1\|WP_020459009.1\|1680319_1681378_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	9.98755e-61
NC_009921.1\|WP_157472411.1\|1678161_1678875_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.00488e-17
NC_009921.1\|WP_020459020.1\|1696694_1697351_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.52046e-14
NC_009921.1\|WP_085950111.1\|1676490_1677692_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26896e-67
NC_009921.1\|WP_020459010.1\|1681374_1682166_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187824	cd09693, Cas5_I, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	6.23634e-18
NC_009921.1\|WP_020459012.1\|1684630_1685146_+\|Dna2/Cas4-domain-containing-protein	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.20477e-61
NC_009921.1\|WP_157472414.1\|1682162_1684634_+\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	9.88263e-48
NC_009921.1\|WP_041253766.1\|1689846_1690089_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	5.99422e-13
NC_009921.1\|WP_020459002.1\|1671182_1673153_+\|type-IV-secretory-system-conjugative-DNA-transfer-family-protein	gnl\|CDD\|378923	pfam12696, TraG-D_C, TraM recognition site of TraD and TraG. This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerisation domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.	1.41055e-29
NC_009921.1\|WP_083788177.1\|1700586_1701657_-\|transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	6.50137e-09
NC_009921.1\|WP_020459016.1\|1692610_1693345_-\|2'-5'-RNA-ligase-family-protein	gnl\|CDD\|379265	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily. This family contains proteins related to pfam02834. These proteins are likely to be enzymes, but they may not share the RNA ligase activity.	2.25495e-13
NC_009921.1\|WP_020459019.1\|1695801_1696719_+\|phosphotransferase	gnl\|CDD\|270690	cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase and Choline Kinase family. This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves as precursors to the synthesis of important biological compounds, such as the major phospholipids, phosphatidylcholine and phosphatidylethanolamine and the amino acids, threonine, methionine, and isoleucine. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	8.80135e-05

>NC_009921.1|WP_020459013.1|1686127_1686391_+|CRISPR-associated-endonuclease-Cas2
MFVILVYDTAAERNPLVLRTCRKYLHWVQRSVFEGELSAAQYRALTAALKTELDLSYDSIRIYRTRTPHLVETEWLGQQMGNQDSIL
>NC_009921.1|WP_020459012.1|1684630_1685146_+|Dna2/Cas4-domain-containing-protein
MKSAPVHHDHGLGGVHIKYLLHCPRQLWLYMRGYRPEATSDLVAFGEIVDDTTYTRRRDVDLGQAKIDWVTTGAVIHETKSSRTPSPAHEAQVRHYCLLLERRGVHVRGGTIHYPLIRRTVPVTWDDAARGQALDTEKQAAAVISAPAAPPRLERRRCRGCSYLDYCWGQT
>NC_009921.1|WP_157472414.1|1682162_1684634_+|CRISPR-associated-helicase-Cas3'
MTAELNQVLAKSVGRSATGRAELLTEHSAAVRDAARRVAERIGPAGPIAAEPRFWTWVEQAALLHDAGKVAEGFQRQVRPRGTVWGERHEILSLAYVNLLIGGPAEQDRLMAAAGVAFHHRSLTVSGGHGTGLAASYPQNADWERRFGRDPDAPRGARIQVTPPRHRELIAWFTGELGSAPLPPDGRKLWEHARELFLATHDTWIDGVPANRGLLAVLLQGAVTLADHSGSAHVPLQRHMPLPRGFLHRLEQPYGHQRAAAASGSHLILVAPTGSGKTEAGLAWASAQLENMPGEPRLVWVLPYRASIDAAADRFTRDLDPPSDPCPEPGESSEYPSTVVARSPDIGVLHATAAATLLTRAVADDCPPSPASARKARARAQAMRLFAQRVRVATPHQLLRAAIAGPRYSSVLLEQANALFVLDELHAYDPETFGRICAALGMWDHLGSRIAVLSATLAKPMIDLVEDSLGGHVDLVRAPAGTAPDRHRLVLDEQPITAPDNLRAISRWMTEGHSVLVVANTVRVAQQLFQALAPAAREAWPDDPDAAILLHSRFKGRDRARIEHRITTRHPERSAGDPALRQGGLVVSTQVLEVSLCLDFDRGVSELAPIEAVAQRAGRVNRRGRHPDGPVEFRVHRTDSALPYQEESLDAAWAAMRHTAAGAQAISEQTVEDWLDHVYSTPWGEQWAATARQARDAFAASFLTFHRPFEDRSEFARSLDENFDTVQVLHRDDEAEYRTLADTDDGDPLLAEGLLIPLRWPQLARLRRDGHAADNRTLRLAVVDAPYDPLTGLGLDLENSPAGGAGPARRGGTRETETVETIL
>NC_009921.1|WP_020459010.1|1681374_1682166_+|CRISPR-associated-protein-Cas5
MSGHLGTTMTVRAPDGRTPVDVLRVDLYAPVASFRDPMFPRVARCLPVPPPSTVRGMLAASSGRAHELVVLGMAASSSGQGVDLETYHPIAADGSNPAVGGRVRTVKGGATVRERPFLTDVRLTLWIPEPDGRRLEATLRRPVWGLRLGRSQDLVQIVGTPRWTVLHPVDEATDEVRVGHALAPPDGHRAREAVSLRLAETVSVDRLRTEYGSYLWCREPAGRQRVGGAAYRDGDQAVWLFGATDPAEHPERSAAGLGNEVDG
>NC_009921.1|WP_020459009.1|1680319_1681378_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MAYLAGKIVVPVEAGAPNNGRGEATTGRVKKTRIRGATYPYVSAQAFRRWVRDTMTASGSVPSPTVRVGKAQNKAQKATTAADPIQYADDDLFGFMKAGAKDDAPTTVRDSPFMVGTLLSVEKVWLTEDFGVMSRGIPEPVLHGHEFYTADLAAPFLLDVPRVGTFTLPGTGGSGRPNYLTEKDALSMAEAVRAGATSVTFRGSSAVRLPLPARRERVAVLLDALAELAGGAKQALHYGDRSAALFALVPMAGGVNPLGFVIGGAEDGSGLRVSGEVLREELAAWEGEYEPPVLIGWRPGFRDELRKQFEEEVADEVDRGAVLIGHPRTVLLDLARRVRGGDHDGWFDDPTR
>NC_009921.1|WP_157473049.1|1678874_1680320_+|hypothetical-protein
MVLARTRLSPRGGLLSLTEHPLQRAGAWAIAVLAGRERPSEVTAADLDEVAGRITADVVRAAVAGKDYTAYDWWKVLFAMFPNSEPTHAGRPRDREALIGTVARFFLPDLEGESARPCCFCGAAASVLWSKKMLPLFDSTKAVNTLPPATAGWPVCRGCRIAWWAMPYGANVTAGSATVLSCDEEAVERAFAAAGCVRTARVRSVGFSSLSADASPEAVTLWVLRDHASSSRPVAATLWSFKNDNQEPWLRVSETRIAVVGFLRALPADPEAHRGWRTLQRQCNRVDRKGTVVRLGRDVVARALFDSVNFPPDQLCRELSHQVDDLGRVSASTIRAWRALYALYLKEMYGMDRKALEPVTTLLVDWIGAEKNPRGRFNEYRKVAGRGFDLQVLLMGACARLYLDGQKPPDVTRITEHLLASGQEGHRLRGQLFFEVVAELVGRGVEIGARTTGAATEAGTETEADGPLVGVDADEDEEAYV
>NC_009921.1|WP_157472411.1|1678161_1678875_+|CRISPR-associated-endoribonuclease-Cas6
MSLLPGVSVRFRVDVGADKATIPWRDVFGPARAVAYELIRGQDADLAEELHGRGYAGSSLRPLGLSSPYFRGPARGHDVYRASKDGTVWFGSPVPRIAGALLAGLAGRRQLRWGSVELDVHGVQLESTPDHSSGETVFSTVTPVLARYEDRYIFPDHPAFVATLVHNLSHKADVLGLPNEVEFEVLSAGPPRKFFVQHTPRHGCVVRARVHAAPALLDALYDWGLGLGTNQGFGWIR
>NC_009921.1|WP_085950111.1|1676490_1677692_+|IS3-family-transposase
MTQRRRKFSPEFKDEAVKMVIETSRPISQVAVELGILEGTLGTWVAAYRRAHADEEPPPTVDERARLRELERQNRELRMENEFLKKAAGVLRQGSSVSDTFEFIDAEYAARTTTNTSAPAPSVIQMCAWLSVSRSGFYEWRDRPASATATRRGALATLVVRSFTASDGTYGYRRVHSDLLAWGRPCSPELVRALMREQGLVPCQPRPWRHTLTEPGQTPAAIPDLLQRDFTADTPGTKMVGDITYIPTWEGWLYLATVIDCHTKAVIGWAMDDNYKTGLIETAITMAARNHQLTDGAIFHSDRGSNYTSTQFAATLKNLGIRQSVGRTGICYDNAMAESFFAALKNERVHRTAYPTREHARRDIARYIELRYNTTRRHSGLDYRTPQQVHDEYLKRQTAA
>NC_009921.1|WP_020459003.1|1673149_1674304_+|hypothetical-protein
MTLPSPTAPDNTPFHSFRVAGGSVVLDLPFRPPPGWTVRAATLWPDSRSSFGWSADHWALGPGGRGFVPGLIDVGDVIQFAAESQTPQHELPANIWAPRQTPTAAQPRAIHSWFGYLHGITRTSLIVRGPYPSPEAAYYTAQRALQIDLARTETARELPHPAEPLHPAAPPAAVSLDYHGDAATVGDPYHGWITVPSRDLASALMLPRHELIHRLRGHVPHLSGREPQVTIAALAARHIPTQLPDLLNPPTPTPPPHPPGVPGPSQPTPAGPEGPAAAEPAPSTTEPTATDPPGNRHDVPVTPAAPSAQHHPDGTPGPPVKMHSDPDAATSTPPPAPSAPTADPTPTGAAAGPSPAGPAEAHGLANTGWVPPDLTLSDPGIDLL
>NC_009921.1|WP_020459002.1|1671182_1673153_+|type-IV-secretory-system-conjugative-DNA-transfer-family-protein
MSVERGRFGDAGLDAEIAVVAVALLVASSAAAVWAGAQLAALAFGAHRPLDVGLGDGLAALPQLIADPAHPAHAWPARAAGDLPGQLGYWAATVVPLAVLAMLSGLAAFLLVGDGVGVARRRRMGIDPEARFARPADLAPLWLGGPTRGRMILGRIGGPRGRLVATEDTNRPLDAAVPRWRARRAARRRGQRGSVIVLGPSQCGKTAALAIPAILEWDGPLIALSVKNDLLGATISRRRQVGDVAVFDPAGVTGELGAPWSPLGAARTLAGARRAARSIANATSWTSASSGDMGFWTAAAEDLLGQLFWTAAVVDLGMDTVVSWVVSMDKETVRGLLTPLASHRDPTLAADGTQVLAGFQGIWANDRRQISSTYLVARQMIQPWQEPEIAASATASHLDLEWLLDTGPDGQAANTLYLSADLDDAERLAPVLGGLLDDLMRQAYSHVGRTGVPLDPPLLVVVDEAGNWPMRNLPGRISTCAGIGIQLVLVYQSKAQIDAAYGPKADIVISNAVTKVFFAGQSDRSTLEYAAGLLGQEHVVQTSTNVDSTGLVGPSGRRGVSRSPTRVELLPSALLRQVAPGQALLVHNTLPPAHLFGRYWYLDEDLHALATGHRTSRRDLVRQAARQRITPGNSPDRPPPPTASGDEQSAAPWWPW
>NC_009921.1|WP_041253766.1|1689846_1690089_+|helix-turn-helix-domain-containing-protein
MGERVDRDNLGEGAARASGRRRLWTIDDLANFLGVPVATVYKWRHAGEGPPGYRIGRYLRFDEKEVMDWLETRRSTPGED
>NC_009921.1|WP_083788176.1|1690152_1691457_-|tyrosine-type-recombinase/integrase
MRTSRRLPSIVIIVRRFMALFWYHQTRSGAAQIAWSVSMPRTGRPPLGLGTYGEIRVYKMDSGRYKARTLYRDFDGVTRPVARNGASKNAAETALKNHLRDRVREAGAEAEITAGSTVEVLAEAWWAEFSKQDKSPGTFRLYRDRLDNQIIPALGKIRIRELTTGAANRHISTVSQNNGAGVAKATRTVLSNMCAFACQRDVMKTNPIREVAPVRPKAKKVPKALSVAELQQLRALFTYDPAAVRRDIPMLSSILLATGVRIGECLAFVEDALDPKEGSIEVRGTVIWLKGVGPIVKPAPKSAAGFRRLLLPKWAVNLLRSRFEESAVISKPVPVLNGEAWDSPLAFPTSTGRLRDITNVESYWREAVTTAGFDWVVPHTFRKTVATEMDRAGRTAREIADQLGHSQITLVHNTYLGRKARDTGAAAALEGLVA
>NC_009921.1|WP_020459015.1|1691726_1692458_+|phosphotransferase
MDVPLPGGWVNTVARSGDTVRRPLPHRADFVHELLGFLARRGWDGAPRFLGIDERGREILTFLPGHVAWEAEQPVSVASDESLVGVAELVRRFHDLTAGTSLAGGSEVVCHNDLAPKNTVYRDLGDGLRPVAFLDWDLASPGERIHDIAHVCWQFLDLGPAVTDTDEVARRIRLIHDAYGLHRHAPLIETILWWQDRCWRGIQAGALAGDPGAVRLRDAGAIEDVRAAYQWVAGNRGRLSGQE
>NC_009921.1|WP_020459016.1|1692610_1693345_-|2'-5'-RNA-ligase-family-protein
MTTARTADPVADDWHRFAGLDRLDNHWDRPGWTPGRRSYHWMLTFEDATELHVLADRCQRQLRLPALDPVPPDGLHLTLQRLAFTDQISRADVDRAVEQTHIRLAGVEPFSLTMGPLAGSSGAVRFSVLPWAPVVAVRDRIIEATTAVLGPAAVAAKPHGFRPHVGIAYCNSQTDAYPIVSAVRGLRGLPPVRVAVGDVALVELRREERAYRWDTVARVHLSAPARSSAPPARPSSTSSSEHRP
>NC_009921.1|WP_020459017.1|1693341_1694673_-|tetratricopeptide-repeat-protein
MRHDPSAFVIPADFWDRTQVAESLRMRDIGSLFRLVQRYAGASQPGIGMRVGLAQSDISKYINGKRIATEFELFERVADGLDLPDRARMLMGLAPRGAVQLPEASRTTVVEPTALPEEPDSVEEIGQRIETLGTSNVSPAVLAHFDVLLLTMADEYEWAGPEKLAPRILRQRRRVQNFLEGRQPPRQRERLYEIAGRLSGILGYMAVNTGRFGLARAYCLEALHTAELVGHDDLTAWIRGTQSLCEYYAGDYRAALDFAREGRRVGGRSAQVIRLAVNGEARALGRLGDRAGVDRSVGEAFDLAEHHPVPGGMSPCISFAPYSIARIAANAATAYVSLGEPGQVREYADMAAQVADRSPSMWSRCLVRLDLATALLLSDSPDPEQAAVLGIEALTATAGNPIESVRRRSHELVARAKPWQQIGPVAELAEASHALALPAGAHR
>NC_009921.1|WP_020459018.1|1694948_1695716_+|hypothetical-protein
MLATKPEHPAAFSVEISEPFTPTWNRIPGITVNGTTVTVEPDRYFFRRSTAPVWMLVDWDLVTERLLSEDETEKAAVEQQTLEFVRTYGQRTSDPADVLRTADRVYHHLFSAEQMDDPDLSDVTDTELRILRESATLAALNRVELSGEISDIGPAWFFPATARVVYDLDADAAERVDDLYHGGFFNEYRRVEAVRAHAALGGRLVHGCQSAPNMSGGAVVPFGVDLDRFRTDLSALKRGWITSILDLVPARAVTA
>NC_009921.1|WP_020459019.1|1695801_1696719_+|phosphotransferase
MDDTTRLLAQLTAQAGIVGPVSRAPVRVWALSGVERLTFPNHPRLIFKFAREPFTREADALRHAAAQSIPVPRLHASVEHGGMLGMLLEDLGEPVRDATLADGIKAAVVTHDAEPAEFLPALDRKALTELPAHALASLADLRSSGRWTDTADLDGLLLALDDHAERLSAGADLPPFGLCHSEFHPTSLHIGSEGWRLLDWARAFTGPGLLDLASWQGTTGPADPVALRRMIRAYIQAGGYGEAARPRAGLQPEAWALGWHRLWIIAWYLEQATTWINDPGQDDVVAQVVRRHLREATTCLDMLIR
>NC_009921.1|WP_020459020.1|1696694_1697351_+|class-I-SAM-dependent-methyltransferase
MPGHADPVAASTAAWEQHAQKRIAAGDIDERPAVHRFRWTRTGVGDPGIEILGDLQGKRVVELGCGAGDNLAYLVDHCGARGIGIDPAPSQIYRARTRWPNPIFHCTDAVSYLATCGPVDVFYSVFGAVGRCPPEALFRQIHERLKPGGRLVFSLLDESSAVRSSAEHEPGLRGSYQAGLREWLERLRYSAFPKSEVSLADESLTPSTLIFSCARPGI
>NC_009921.1|WP_083788177.1|1700586_1701657_-|transposase
MVMVWSLLYALTRNALGLMLLHVRGDTAKDVELLVLRHQVAVLRRQVNRPTLEPADRVILAALSRLLPRARWGSFVVTPATVLRWHRELLARKWTYPRKTPGRPPVRREIRDLALRLAQENPTWGHRRIHGELAGLGYPVGVATVWRILHRAGVDPAPRQADTSWRTFLPAQASGLLACDFFTVDTVFLQRIYVFFVVEHATRHVHVLGVTKHPTAAWVTQQARNLLMDLDERGHRFRFLIRDRDTKFTASFDAVFAGAGIDVVRTPPQSPQANVITERWVGTARRECTDRLLIVSERHLTSTLTSYAKHFNTHRPHRSLGQHPPDPPPVLAPTPESTVRRTRILGGLISEYRNAA
>NC_009921.1|WP_020459023.1|1701900_1702371_-|hypothetical-protein
MELREASEVIGDYTGNARKALEYGLIMKRLVDQAKAPGFSVESWAPLAELIAVDEFERVGNFKEVMTWAECVNFLTVWAASANWEYSFKRITERPGVVFLELEERSRVGEQVSAVNSLSVYEFNDAGKIRHLDIYLQWPLPNPEMLASYEGIRISE

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Crispr_ID: NC_009921_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009921_5

1825564-1825646

Orphan

Consensus_repeat	Method
ACCGGGCAACGATCAACAGGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009921_5

>merge|NC_009921|5|1825564-1825646|CRISPRCasFinder
ACCGGGCAACGATCAACAGGGCGCAGACCGGGCGCGCAGTGGGCGCAGAGTGGGCGCCAACCGGGCAACGATCAACAGCGCGC

>NC_009921|5|7|1825564-1825646|CRISPRCasFinder
ACCGGGCAACGATCAACAGGGCGC	AGACCGGGCGCGCAGTGGGCGCAGAGTGGGCGCCA
ACCGGGCAACGATCAACAGCGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009921.1\|WP_020459147.1\|1835123_1837355_+\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NC_009921.1\|WP_157473057.1\|1822153_1824193_-\|cell-division-protein-FtsK	unknown	unknown	gnl\|CDD\|224588
NC_009921.1\|WP_157472437.1\|1831998_1832298_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020459129.1\|1818849_1819539_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NC_009921.1\|WP_020459126.1\|1816045_1816903_+\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|224857
NC_009921.1\|WP_041255633.1\|1824532_1824745_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_041253806.1\|1834527_1835007_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NC_009921.1\|WP_020459135.1\|1824801_1825110_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020459144.1\|1832503_1833715_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_009921.1\|WP_020459127.1\|1816931_1817495_-\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|334719
NC_009921.1\|WP_157473059.1\|1833797_1834145_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|252734
NC_009921.1\|WP_157472434.1\|1824374_1824536_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020459140.1\|1828205_1829051_-\|DUF4111-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NC_009921.1\|WP_157472432.1\|1820196_1821654_+\|resolvase	unknown	unknown	gnl\|CDD\|214861
NC_009921.1\|WP_041253801.1\|1825875_1826403_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_041253797.1\|1817764_1818766_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187539
NC_009921.1\|WP_020459141.1\|1829377_1830679_+\|aspartate--tRNA(Asn)-ligase	unknown	unknown	gnl\|CDD\|235354
NC_009921.1\|WP_083788183.1\|1827330_1828347_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NC_009921.1\|WP_041253800.1\|1825174_1825375_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020459138.1\|1826828_1827245_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009921.1\|WP_020459147.1\|1835123_1837355_+\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NC_009921.1\|WP_157473057.1\|1822153_1824193_-\|cell-division-protein-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	3.12132e-06
NC_009921.1\|WP_020459144.1\|1832503_1833715_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.03815e-08
NC_009921.1\|WP_020459129.1\|1818849_1819539_-\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.36271e-29
NC_009921.1\|WP_020459126.1\|1816045_1816903_+\|acyl-CoA-thioesterase-II	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	1.67508e-95
NC_009921.1\|WP_020459127.1\|1816931_1817495_-\|dihydrofolate-reductase-family-protein	gnl\|CDD\|334719	pfam01872, RibD_C, RibD C-terminal domain. The function of this domain is not known, but it is thought to be involved in riboflavin biosynthesis. This domain is found in the C-terminus of RibD/RibG, in combination with pfam00383, as well as in isolation in some archaebacterial proteins. This family appears to be related to pfam00186.	2.24537e-29
NC_009921.1\|WP_157473059.1\|1833797_1834145_-\|hypothetical-protein	gnl\|CDD\|252734	pfam04672, Methyltransf_19, S-adenosyl methyltransferase. This family contains a SAM (S-adenosyl methyltransferase) domain, with a central beta sheet with 3 alpha-helices on both sides. Crystal packing analysis of the structure Structure 3giw suggests that a monomer is the solution state oligomeric form. An unidentified ligand (UNL, cyan) was found at the putative active site surrounded by the residues His57, His170, Phe171, Tyr216 and Met22. The UNL is likely to be a phenylalanine or phenylalanine-like molecule. (details derived from TOPSAN).	2.34603e-49
NC_009921.1\|WP_020459140.1\|1828205_1829051_-\|DUF4111-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	0.00391805
NC_009921.1\|WP_157472432.1\|1820196_1821654_+\|resolvase	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	9.06659e-21
NC_009921.1\|WP_083788183.1\|1827330_1828347_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.1376e-21
NC_009921.1\|WP_041253797.1\|1817764_1818766_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187539	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs. This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.6072e-84
NC_009921.1\|WP_020459141.1\|1829377_1830679_+\|aspartate--tRNA(Asn)-ligase	gnl\|CDD\|235354	PRK05159, aspC, aspartyl-tRNA synthetase; Provisional.	0
NC_009921.1\|WP_041253806.1\|1834527_1835007_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	3.10361e-33

>NC_009921.1|WP_041253800.1|1825174_1825375_-|hypothetical-protein
MLLLVLLALLLFPLFKFLGRIFLALGGLLLVLSVFQVLSEHVSGYLVIGLILWALYALFSRSGSRH
>NC_009921.1|WP_020459135.1|1824801_1825110_-|hypothetical-protein
MSEIDPSFGPLTLSDLANRADVAWTHHMETYTAGTVLHRLHLAVRTAAETAADLELLESIDIVQDRLAQYRKTSRDVWKDTYLTWADAAGIDVSLDEFGFEE
>NC_009921.1|WP_041255633.1|1824532_1824745_-|hypothetical-protein
MDFSAVILILVLLGVAILAPRLRVARLIPVTCILLGYFLGKFGVGVVVHGVWDFVQTVLAFLPIRVESTT
>NC_009921.1|WP_157472434.1|1824374_1824536_-|hypothetical-protein
MTDVLIGFLLVDVVLANLCALVLAVESLLREPISTRDERDTYRAAEFHNPSDH
>NC_009921.1|WP_157473057.1|1822153_1824193_-|cell-division-protein-FtsK
MDLDPDPPPPGATVDLPAGATADDGPQRRAIIPDGLRWPQLLGTVRHTVGFWAYVAAYHSVRAPWYVLVALRAALVGTGRLASTHGRWIMVTEAHDLRRAAASGDASTWLALHRTVHSARKRRALVVLLEAAGFGYAVIALPSVWAVFPVLARLVLVLLIMAPLVAAGRPAHGRLIPPAVVTPRFRRLSADIVLRAYYAAKLGDPEKPGQQITFGSAMAREGDGSRVLVDLPYGKGTSDAVKAHPAIASGLDVATSQVFISRDKSSNRRHVLWVADRDPLAIPAGRTPLLRLHETDIWKPAPLGLDERGRKVWLELLWNSILVGAQPRQGKSFTLRSLGLYGAADPYVKLSIFDASGKPDWRAFATVADRCAFGLAITRDGDPIEILIDTLREIKKDVEERYIHLSDLPPSVVPEGKLTREIARNPAYGMPVRILLLDEFQMYFATGNTDADKEIAELLVYLIRVAPAAGVIIGSATQRPSGIGSGGDVARRFTDYRDNHLVRFALKTGSYVVSDLVLGSGAYSEGLDSSMLDPEYKGVGILRGALDHSPTVRTYLADAEDAAKILHAARVRRERLGALSGQAAGIPLPSPGMVRNILEDMETVFSGDSALHWSEIAERLARRIPEHYSDVNAETISAQARDLSVPSVNVKRNGVVLKGARVDAVRKARQKADDARRVR
>NC_009921.1|WP_157472432.1|1820196_1821654_+|resolvase
MISTGSEDGTVGELGAGFVRVSTGSQDETSQVKILTEEAAQRGITIVKWFTLHGYSASHGAQEPALREAIADIQRRDYTTLMVTESSRLDRRDDLDAQAEILLGIRSAGGDIISIAEPQFGKTDFAGRIVTLVAQHANAEKSKTVKATTYRGISLIIANGAHHGPLPSFWATKGERYAKQAYCADPESVRDIYERVANRESLKSIGRVYDLYPGSIKNLVRFAANHTGVEECRYTHEGVTETWAHEVAPVVESPLWWRANNVLDANMTDTRGNKGGRPVARPANWLSGILGCPSCGAKLHVHGGRTPAGNPRAPKLRCGGHAKQRKACGIFTGCDAQPIIDVIESMLSSDTTPILAFQRVAGNAHELDEMRAELAKLQSRLSVTEDDDELDVLVATRKKLRAAIESFDLVPDAYDYAETGQTVSHMWTSGDLDEKRGMIRAIMNSWGLELSRYNGQWGIKVGAGFTGAGGAGGIVDLGNGFCFRR
>NC_009921.1|WP_020459129.1|1818849_1819539_-|HAD-family-hydrolase
MLRAILLDFYGTVVTEDDYTIEIVCEQVRVTATGRPDLTAAEVGAYWRQVFQEETGRSIAEAFRTQRDITLSSLARALRRFGSTADPYMLCTPQFDLWRQPKLCADSRAFLDALDLPVCVVSNIDRADLRTAIDHHQLPLDLLVTSEDARCYKPHPAIFQTATRLLGLPPDAVLHIGDSLTSDVAGAHALGIPTIWVNRSGRPRPADLTSIAEVGALTEALPLLQQARR
>NC_009921.1|WP_041253797.1|1817764_1818766_-|NAD-dependent-epimerase/dehydratase-family-protein
MVGTHLVMGASGFLGSHVTRQLAERGDDVRVWIRRSSSTRAFDDLPVQRCYGELVDDAAIREAMHGVDTVYYCIVDTRAWLRDPAPLFATNVDGLRHALDAALEAQVRRFVFCSTVGTIGLSPDGRPADESVPHTWEHLGGPYIQTRVAAENLVLRYCREHGLPGIVMCVSTTYGAPDHGSPHGRMVSDAAKGRLPFYFGNAAMEVVGISDAARAFLLAAEKGRVGERYIISERYMTWKELVTTAADAGGAKPPRVGIPLPVMKAVGRLGDVAGRVLRRDVVMNSVSTRLMHFMPPLDHSKATRELGWDPSPTPDAVRAAAKFYLEQQHQTGR
>NC_009921.1|WP_020459127.1|1816931_1817495_-|dihydrofolate-reductase-family-protein
MRTLIVTAFVSVDGVMEAPGGEAEYRNTGWTFKDIDFDPAAYEIKGREQEETTALLLGRTSYEAFAPVWPTMDDFAGYNAMPRYVVSSTLTEDDSRWPATILRSVDDVAKLKETEGGPIAVHGSATLGKSLADAGLVDRYHLLVFPVLLGAGKRLFSEADKDKTMLKLVECDAYPNGVQKQVFEVVR
>NC_009921.1|WP_020459126.1|1816045_1816903_+|acyl-CoA-thioesterase-II
MTERKPDFADLLMLESVDRDIFRGLCHDGAPMRAFGGQVAAQAQVAAGRTVEPDRRMHSLHGYFLRPGRTDAPIVYLVERIRDGRSFTTRRVSAVQDGETIFSMSASFQRPREADETHRLRAPDVPGPETLPRWWGPIEEAPEYRPFLLIDVRSTTGPLGGAEARQAAAAAGSVDGMPRQSVWVRVDQVLPDDPLLHVCALTYLSDLTLASTASLPYNGLPGRLDIVSLDHAMWFHRPFRADDWLLFAQDSPSADSGRGLSRGMFFTRDGLLVASAIQEVGLFRR
>NC_009921.1|WP_041253801.1|1825875_1826403_+|hypothetical-protein
MIKLLDDLLATGAQHPEDIINSAPELIDRMRPGEPRDLYQRARETQRILVATIDALERPRSDALRALYSLDPVPRGHKLLLNQTERREKAGVVYRVSGETMRRHMESRLLLALAVELDHRLTRGVGTTHSVISAIIKLPHQLPPPPMEFYRRARERRGTRTPRSQKVTEHPRSQE
>NC_009921.1|WP_020459138.1|1826828_1827245_+|hypothetical-protein
MPSIQPPDHGPWRNPFDGHRFVAVRRTERGLYELTLTPGADLHDLINVTATLPSVVYLDHRPAEPTDPTVILTFGPTPTPAGRPTIRPGIDGPAGWTPTLDTTEDPPTLTEADFRTVLDARIYRLYGRHLSDITRTTQ
>NC_009921.1|WP_083788183.1|1827330_1828347_-|methyltransferase-domain-containing-protein
MGGEFFSWRMERRYRLGPCDPWRPTSRSLRVRLRPRGRNRILACQRLATSVCKAPRESESPLSAKHAAHVRTKRDDRGAWRISEETRMDVQLDWAKRAYSEDYFHYISPRADDRETADMVRTIGDLLELEPGARILDLCCGAGRHTVTLADRGYTVVGVDRSFAGLELARGQITLRATSAQVVCADVRNLPFGRNFDAAVSLFSSFGYLPSVAEDAALVREFCRVLRPGGYFLLDLVNPILPMFGRESRVWRQARGRFVLEERSYDPASGISTSVRTVISDGFRLKPIVTYIRIYTLAELARILGNAGLCISKVRGDYQGGPYDAMTSPRLIVLAVQP
>NC_009921.1|WP_020459140.1|1828205_1829051_-|DUF4111-domain-containing-protein
MAKETSSSPLDCPKKRVGLRGLAAMRWGPSLRSEIPDVASIVDATTAALMECFKNELVGIYLSGSLSMGDFDLNSSDIDFVVVLRRPLGDAAFLAALRETHNRLRTDGGWWGTRLEVVYLPVHFCRATSLERAQHWMLNTSGELVLSKPRSDWIVQMYIAREYGPHLAGSTAAETIAEVTEDQLRASVHGAAPFIRRPEGDVQIERTLALHVLSACRLLYTKMLGTIATKSQAATWAENFFHGEWSAVIGSALATRGGRRPVPCASGYALVEEIESLLARD
>NC_009921.1|WP_020459141.1|1829377_1830679_+|aspartate--tRNA(Asn)-ligase
MERTYTTDLPKRAGEKVHLAGWVHRRRVLKNVTFLVLRDARGTAQIVVNEPDILSKISDVTEESVVEIDGQAVANPHAPGGVEVINPEIGILSEAVSPLPFEIFRPNLDVSLPVQLDHASLALRHPRRQAIFRLAAASVAGFREALTSEGFTEVHTPKIVASSTESGANVFGIDYFGSRAYLAQSPQFYKQTLVGVFERVFEVAPVFRAEPHDTARHLAEYVSLDAEMGFIEDHHTVIKMVSLAVRHMVEKVSATDPEESILADQTLPRIPEQIPIIHFSDAQEMIQRATGEQVIGEPDLAPAHERWLGEWALHEFGSDFLFVTGYPMRKRPFYTHPDPARPEFSNSFDLLFRGLELVTGGQRLHRYTDYVQAITLRGEDPEKYRAYIDTFRYGMPPHGGFALGLERWTARLTGAANVREVTLFPRDLHRLTP
>NC_009921.1|WP_157472437.1|1831998_1832298_-|hypothetical-protein
MSEDGSANEQSEDNNRTDERFPQLQKILADELKIATVAMLKIMDIISIEYLPWSDHKITILSLRAESILSDLDHLTARISEQPTGGMLPNPNGHPAAST
>NC_009921.1|WP_020459144.1|1832503_1833715_+|helix-turn-helix-transcriptional-regulator
MREIRALGDRVAQVRVRRSMTQAELAERADVSVDLVTKLEQGQRDGIRITTLHSLARALEVPTATFFKVEVETAMSDSEALMPLRRLLLPGPSGSRAEEPALGLRPLRDRLVALTQDYHHARYSQAVRTAPALIEDITAASALHQGEDQEAAYRLLSHAYIMAASVLIQLGGEDLACEAIRRSMEAADSAGDQILRASGVVYYRWAFIRQGRFDDAERVAVEMAAEIEPSIMRSTPEHLGVWGRLMTGASAAAARNNRPETASELLSYARSSAARIVDGKMDYAKYWAAFGPSQVDAIEVENAMTQGDAPRALQLAGSVHRTENMPLSNWTRHLLAVAEAQTATRDYPNAIRTVQEARTLTPEWLREQRLAGKVVRDLLDATSVRRARKSGLAELASFVGVQP
>NC_009921.1|WP_157473059.1|1833797_1834145_-|hypothetical-protein
MRTDVAHIARVYDHWLGGKNNFAADRKVAEAVMAAMPTVTESVRANRSFLRRAVNLLATEHGIRQFLDIGTGLPAADNTHEVAQRAAPDSRIVYADNDRCKSGCSHPVQCLHGAF
>NC_009921.1|WP_041253806.1|1834527_1835007_+|transcriptional-repressor
MGDHVVVATAEDFRRMLRGAALRVTRPRVAVLTAVYAHPHADTDSIVGSVREELPEVSHQAVYDSLRVLTTAGLVRRIQPAGSAARYESRVGDNHHHVVCRSCRAIADVDCAVGSAPCLAASDDRGFSIDEAEVFYWGRCPDCSPPATPDRPRAAPDRS
>NC_009921.1|WP_020459147.1|1835123_1837355_+|catalase/peroxidase-HPI
MSENHETVVSELNEESGGGCPVAHERAPHPTQGGGNRGWWPNRLNLKILAKNPAVANPLGEEFDYAAAFRTLDLPAVKRDIAQVLTTSQDWWPADYGHYGPFMIRMAWHSAGTYRISDGRGGGGAGQQRFAPLNSWPDNGNLDKARRLLWPVKKKYGQALSWADLMILAGNVALESMGFTTFGFAGGREDVWEPDEDVYWGPETTWLGDERYTGDRELENPLGAVQMGLIYVNPEGPNGTPDPLAAARDIRETFRRMAMDDEETVALIAGGHTFGKTHGAGDPDNVGPEPEGAPLETQGLGWKNAFGTGKGADAITSGLEGAWTPTPVSWDNSFFETLFGYEWALTKSPAGAYQWKPKGGAGAGTVPDAHDAAKSHAPTMLTTDLALRFDPVYEPISRRFLEHPDELADAFARAWFKLTHRDMGPVARYLGPEVPAETLLWQDPVPAVDHELVDAADVAALKVRVLASGLSVSELVATAWASASTFRGGDKRGGANGARIRLEPQRGWEVNEPDRLAAVLGTLTGIQEEFHAARTDGRRVSLADLIVLAGGAAVEQAAREAGFDVEVPFTPGRTDASQELTDVESFAALEPAADGFRNYLGKGQRLPAEYLLLDRANLLTLSAPELTVLVGGLRVLGANFRQSSLGVLTATPGVLTNDFFANLLDLGTTWRPSGEDDNVFEGRDAATGELTWTGSRVDLVFGSNSELRAFAEVYASDDAREKFVRDFVAAWAKVMNLDRYDLA

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Crispr_ID: NC_009921_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009921_6

3618753-3618836

Orphan

Consensus_repeat	Method
CCCGCGCACGCGGGGATCTTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009921_6

>merge|NC_009921|6|3618753-3618836|CRISPRCasFinder
CCCGCGCACGCGGGGATCTTCCCCAGGGTGCTAACTGGGCACCGCCCGACGTGCCGTCGTCCCCGCGCACGCGGGGATCTTCCC

>NC_009921|6|8|3618753-3618836|CRISPRCasFinder
CCCGCGCACGCGGGGATCTTCCC	CAGGGTGCTAACTGGGCACCGCCCGACGTGCCGTCGTC
CCCGCGCACGCGGGGATCTTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009921.1\|WP_020460621.1\|3599272_3600592_-\|lysine-N(6)-hydroxylase/L-ornithine-N(5)-oxygenase-family-protein	unknown	unknown	gnl\|CDD\|379182
NC_009921.1\|WP_012157514.1\|3625340_3625961_+\|endonuclease	unknown	unknown	gnl\|CDD\|315923
NC_009921.1\|WP_157472643.1\|3634444_3634747_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020460636.1\|3633679_3634159_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_085950116.1\|3623464_3624666_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_009921.1\|WP_020460635.1\|3632609_3633140_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|319351
NC_009921.1\|WP_083788246.1\|3601750_3618700_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NC_009921.1\|WP_020460614.1\|3592018_3592441_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377531
NC_009921.1\|WP_020460632.1\|3629893_3630670_+\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|237825
NC_009921.1\|WP_020460620.1\|3598987_3599239_-\|MbtH-family-protein	unknown	unknown	gnl\|CDD\|377081
NC_009921.1\|WP_020460623.1\|3601512_3601767_-\|phosphopantetheine-binding-protein	unknown	unknown	gnl\|CDD\|225967
NC_009921.1\|WP_020460634.1\|3631691_3632432_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020460619.1\|3597626_3598373_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_009921.1\|WP_083788247.1\|3629137_3629491_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NC_009921.1\|WP_012157515.1\|3624876_3625416_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379282
NC_009921.1\|WP_157472644.1\|3634926_3635388_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|252734
NC_009921.1\|WP_020460622.1\|3600597_3601440_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131480
NC_009921.1\|WP_020460617.1\|3594354_3595803_-\|FAD-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|236214
NC_009921.1\|WP_020460616.1\|3593124_3594351_-\|NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|236158
NC_009921.1\|WP_020460618.1\|3595868_3597494_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|223952

Protein	Function_ID	Function_description	E-value
NC_009921.1\|WP_020460621.1\|3599272_3600592_-\|lysine-N(6)-hydroxylase/L-ornithine-N(5)-oxygenase-family-protein	gnl\|CDD\|379182	pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring). This is family of Rossmann fold oxidoreductases that catalyzes the NADPH-dependent hydroxylation of lysine at the N6 position, EC:1.14.13.59.	1.46364e-126
NC_009921.1\|WP_012157514.1\|3625340_3625961_+\|endonuclease	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.12757e-26
NC_009921.1\|WP_085950116.1\|3623464_3624666_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.03557e-67
NC_009921.1\|WP_020460635.1\|3632609_3633140_-\|transcriptional-regulator	gnl\|CDD\|319351	cd16837, BldD_C_like, C-terminal domain of BldD and similar transcription factors. The Streptomyces transcription factor BldD dimerizes via an unusual mechanism that inolves a tetrameric c-di-GMP assembly. BdlD is involved in controlling multicellular differentiation in sporulating actinomycetes.	1.92661e-22
NC_009921.1\|WP_083788246.1\|3601750_3618700_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NC_009921.1\|WP_020460614.1\|3592018_3592441_+\|hypothetical-protein	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	0.00590533
NC_009921.1\|WP_020460632.1\|3629893_3630670_+\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|237825	PRK14828, PRK14828, undecaprenyl pyrophosphate synthase; Provisional.	5.09475e-111
NC_009921.1\|WP_020460620.1\|3598987_3599239_-\|MbtH-family-protein	gnl\|CDD\|377081	pfam03621, MbtH, MbtH-like protein. This domain is found in the MbtH protein as well as at the N-terminus of the antibiotic synthesis protein NIKP1. MbtH and its homologs were first noted in gene clusters involved in non-ribosomal peptides and other secondary metabolites by Quadri et al. This domain is about 70 amino acids long and contains 3 fully conserved tryptophan residues. The structure of the PA2412 protein shows it adopts a beta-beta-beta-alpha-alpha topology with the short C-terminal helix forming the tip of an overall arrowhead shape. MbtH proteins have been shown to be required for the synthesis of antibiotics, siderophores and glycopeptidolipids.	1.17244e-26
NC_009921.1\|WP_020460623.1\|3601512_3601767_-\|phosphopantetheine-binding-protein	gnl\|CDD\|225967	COG3433, COG3433, Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism].	3.45818e-08
NC_009921.1\|WP_157472644.1\|3634926_3635388_-\|hypothetical-protein	gnl\|CDD\|252734	pfam04672, Methyltransf_19, S-adenosyl methyltransferase. This family contains a SAM (S-adenosyl methyltransferase) domain, with a central beta sheet with 3 alpha-helices on both sides. Crystal packing analysis of the structure Structure 3giw suggests that a monomer is the solution state oligomeric form. An unidentified ligand (UNL, cyan) was found at the putative active site surrounded by the residues His57, His170, Phe171, Tyr216 and Met22. The UNL is likely to be a phenylalanine or phenylalanine-like molecule. (details derived from TOPSAN).	9.58509e-18
NC_009921.1\|WP_020460619.1\|3597626_3598373_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	2.47245e-74
NC_009921.1\|WP_083788247.1\|3629137_3629491_+\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	6.93811e-32
NC_009921.1\|WP_012157515.1\|3624876_3625416_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379282	pfam13592, HTH_33, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	2.85373e-18
NC_009921.1\|WP_020460622.1\|3600597_3601440_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	4.15925e-29
NC_009921.1\|WP_020460617.1\|3594354_3595803_-\|FAD-binding-dehydrogenase	gnl\|CDD\|236214	PRK08274, PRK08274, FAD-dependent tricarballylate dehydrogenase TcuA.	0
NC_009921.1\|WP_020460616.1\|3593124_3594351_-\|NAD(P)-binding-protein	gnl\|CDD\|236158	PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.	2.76581e-60
NC_009921.1\|WP_020460618.1\|3595868_3597494_-\|AMP-binding-protein	gnl\|CDD\|223952	COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	0

>NC_009921.1|WP_083788246.1|3601750_3618700_-|non-ribosomal-peptide-synthetase
MDGQRGEGSPMSRGGDSRGDAGSASAADEVPSDQGVSGGKRLPLSFAQRGNWAAQRLFPGSAAFCVCDLVWLDGAINAGAFADAVSGAFAETEALRAVIYDDDGAPSQSVGGKLSLPTVVPEEVLTDEEIRSVVRAGVSARESSAAEDLTSSTLFKRVGGGWVWSFTTNNLLLDGYSTSLYIRRVAELYSAAVDAILAPPRWFGRLEDLVAGSASTPGGSGIVGHWRDVLAIDAFSEPMGSAPADLFSFSYRPVPVVLPAGADDRLRMLARQARSTWTDLVITAWGLYTALAGNQDYLAVRVPSMMRGEPESLRVPGAVARALPVATALRPGATFAEVLSVVGSQVRGLRDNSAIEDHQLARLWKGGELSYLSLPSVNIKMFRTTPVFGKVAGVTELINPGPTGALDLSVYGSPGRGLRMDISGRSPLVPTDAAGQHAAAFTAFLGHLLGGPAGMTLHELADLTITPSSVDAGSVGVWSVGAGAVVPAVTVDALIRDQVARTPGAVAVVDDADGAELVYAQFDARVNALAHLLTERGVRVGGRVAVALPRSADLVTSLAAVLRAGAAYVPVDPGYPAERIAAILQDSGARVAITDSATAVAHAGVLTAAGVVTVVLDEDAVRGQIEHGAPDAPVLPRPLTPDDTAYVIFTSGTTGRPKGIALSHAAVVNRLVWGREALGFSSSDRVLLKTPFTFDVSVPEFFLPLITGAVVVVARDNAHGDPGYIAGVVRKRRVTSVHFVPSMLQAFLDSGVEAGFFPDVRLVSFTGEALPVAAAIRAREVFDRAELFNLYGPTEAAVEIASYDIAALNADADSTPIGRPVSNSYVRVLDGWLRPVPVGVTGELYLGGVQLAEGYVGRAGLTAERFVADPLGAPDERLYRTGDLARWNDQGELEYLGRSDDQVKVRGFRIELDEIRAVLERHPAVSGAAVTALDHPAGGKFLAAYVTTTPSAPADQAVLADALREHTNALLPEYMVPASFTRLATLPTTPSGKLDRKALPAPDLTAGSGSGRPPETDTELSLAGVFRDVLALPEGTPLSVDDDFFRLGGHSLLATRVVARVNAILGSGLSLRDVFDHPTIAGLAEIIIEGSSVSTIPALQIGDLPRPANLPASFGQQALWVIDRLGGPGGRYVVPMVLRLSGELDVGILDAAVKDIVTRHEALRTLIVEDDGRLRQVVVPAQDASVRLTLIPEDLSGAGGDAVEERIADFVRQGFDLAADIPFRAGLLREAGTEWVLVLAVHHHAVDEWSLPVLLGDLSTAYQARSAGCEPGWAPLKMQYADYAIWQRDILGDPADPDSELAQHLSYWRNALADAPEESTITLDRSRPAEPTHQGGDAAFAVASETVTGLRGAAQHNGVSMFMIVQAAIALTVSALGGGNDVVIGSPVGGRTEDGLENLVGYFVNTLPLRHRLRPDDTISELLGRARQTVLDGLAHQAAPFEHIVSAVGVDRSAARNPVFQVMLTYQNLSGGPDLLNLPGVTARQQRASLGAVKTDLDIYVDETQHTLTGSLSFATDLFNPGTAERFLALLQRTLTTIAARPDTRIADLQVLSDADAGSVGVWSVGAGAVVPAVTVDALIRDQVARTPGAVAVVDDADGAELVYAQFDARVNALAHLLTERGVRVGGRVAVALPRSADLVTSLAAVLRAGAAYVPVDPGYPAERIAAILQDSGARVAITDSATAVAHAGVLTAAGVVTVVLDEDAVRGQIEHGAPDAPVLPRPLTPDDTAYVIFTSGTTGRPKGIALSHAAVVNRLVWGREALGFSSSDRVLLKTPFTFDVSVPEFFLPLITGAVVVVARDNAHGDPGYIAGVVRKRRVTSVHFVPSMLQAFLDSGVEAGFFPDVRLVSFTGEALPVAAAIRAREVFDRAELFNLYGPTEAAVEIASYDIAALNADADSTPIGRPVSNSYVRVLDGWLRPVPVGVTGELYLGGVQLAEGYVGRAGLTAERFVADPLGAPDERLYRTGDLARWNDQGELEYLGRSDDQVKVRGFRIELDEIRAVLERHPAVSGAAVTALDHPAGGKFLAAYVTTTPSAPADQAVLADALREHTNALLPEYMVPASFTRLATLPTTPSGKLDRKALPAPDLTAGSGSGRPPETDTELSLAGVFRDVLALPEGTPLSVDDDFFRLGGHSLLATRVVARVNAILGSGLSLRDVFDHPTIAGLAEIIIEGSSVSTIPALQIGDLPRPANLPASFGQQALWVTDQIAGKTIYRMVMALQSREPVDVSALQAAVRRLVARHEILRTTFVLDEDAAELRQRIHPATEPSVALVTVEQIPSSAADERIAELVAAPMDLASDCGLRFSLLRGEEDDLLVAAGHHIVSDEQSFTPFLRDLNALYHEETSGTSSELVALPVQFADFALWHRAVLGDSRDADSRYRRDLEYWRGTLEDLPTETPLPIDYPRTDTDSRTVRPATAVLSDDEVGAVDALLIERRATPLQGLMTALTLALWSEGTGTTVPIGIPASLRDLPELSDLIGYFVNTVVVRSDIDEMDGFGQALTNMRERMLEANERKLVPFDAVVEAIQPIRAPGISPLFQVMAAYLDQGDPEPGPATTFVPYVPVATGGPGPARPALFDLVYSITRRSDGALALHLNAARELFSEDTSSRLLQKTRLFLTLGARHPELASVHLAQMVQAALDSGLHGAASDQERPVFRLALPAFDIQDAVLWRAAVDHVALALGDGGMQLRVLDDGSGELVAAHDNVEALDAVGALLAELVAGYDSQSRLVIETPRAGGDQRTDAELSTVLEDPFWDDWIDQLAAVRDVSLPSNAGEAPAFATHSVGISGQREMSGTTQLEAWDAIARTLARTLGESQLIVERREPADAFTVWSYPILLGEPATTPNGGGTHSPLTLSPERAADYASLRARPQLSRFFDDLPLPHIRISVFRSAAERIATVPAIPADNPIQLDICILIGPGLASEPQTVRVEVETAPGIDLDACALAEEIATVTAQIDFALTLSRQSPSGLRLRRADRLTISWEEEERIRALYGKAAEILPLSTLQRGIFYHMVRAQESDDHNAYVSQATRELSGAVDPDRLEGAVRVVLDRYPNLRAAFVPSGEAQVIPAVADAPFRSISLTEWSELRVDIGDFLAAERREPFDFQTPPLIRFTLIERSTDSWILAMSFEHILLDGWSLKALFEEILTIYADPGYADRVEPASFRSYLEWLDGRDPETAVRAWSDYLAELSGPTMLWPEGGDLGAGQIDTGDLHYNLDPSAAAAVFGAARTAQVTVGAVLQVSWAVTLSRLTGSDDVVFGNTVSGRPPELPDADRTIGVLFNTVPMRVRLSPFETAQEMLARVQSEQLRVIDHPDTALTSIQASAGMATLFDTLFVVQNLPFQVRDERDWAGVRVVGSAVDDATHYPVTFAVNVWERAGSASVHVRFSYRRDAYETASAKKMLERYVATLNAIASRLRAPVGGLTVLLPDEVEPHTGTAADLHRDVEPVTVAGLLDDQVARSPGETALVAGARSFTFAGLSAEVNRYARLLLERGVRQEHRIALLLPRDERMVIAMFAVFAVGAAYVPIDAELPDDRIGYMLDVAGPTVTLVTDRDVARLGPAAGRVVNLDDAVVRARVAELADGPVTVAERGGEVSLDHLAYIIFTSGSTGRPKGVAVGYRGLTNMYANHVEKIFDRVVAHQGGRRMRIAHTTSFSFDASWEQLFWLLNGHSVYVINEEMRRDPQQLLAYYDDQRIDGFDVTPSYGQVLVDEGLLERDRPAGRSVSADATGVVFVSLGGEAVPERLWQQLRDAPGVESYNLYGPTEYTINALGADLADSPNPSVGTPIFNTRAYILDQNLQFALPGVPGELYLAGAGNARGYWEQPALTAERFVACPWEPGARMYRTGDLARWNDEGRIDYLGRADEQTKIRGYRIEPGEIRDVLEAHPEVVRAEVIAADHPSGGKFLAAYVTTARIDTSDDALRRSLREHAAQHLPDYMIPTTITRIDSFATTVNGKLDRKALPVPDLSEITGTDGRAPETPTERSLAEVFRAVLSLGGEVSLRSNDDFFRLGGHSLLATRVVARANAALGSALTLRDMFEQATIEGLARVVDGASQTVSRVPRVGDLPRPELLPVTYGQRSLWVIEQMGGPGARYVVPLIRHLSGELDETALRSAVQDVVTRHEALRTLIVGDDGQLHQVILTGEEAALRLPLIPEDFIGAGQDAIDERLRELVRSRFDLAADIPVRAGLLRVEVAEWILVLAVHHHATDEWSTPTLLEDLFAAYAARSKGHEPAWEPVGIQYADYAVWQQAVLGQPTDPESALHHHLKYWADTLADAPGESTISPHRPRPAEPTYRAADVSLTISSDVVADLRRVEDGCGVTMFMISQAAVALAISVMSASDDVVLGAPVGGRTEDGLEGVVGYFVNTIPLRHRYFPGDKFSDVLARVKQTVLDGFSHQAAPFDQIVTAISADRVVGRNPVFQVMLTYQRATGRRVDPEVRDLVVRPRMVGLGAVKGDLDLYLVDSDTEVSVFLTFSTDLFEEKTAVRFLGVIQKILGAIAEDPNRTIAEVDLLIAKERPALEAWTTGSPAELAGVTVAGLLDDQVARSPGETALVAGARSFTFAGLSAEVNRYARLLLERGVRQEHRIALLLPRDERMVIAMFAVFAVGAAYVPIDAELPDDRIGYMLDVAGPTVTLVTDRDVARLGPAAGRVVNLDDAVVRARVAELADGPVTVAERGGEVSLDHLAYIIFTSGSTGRPKGVAVGYRGLTNMYANHVEKIFDRVVAHQGGRRMRIAHTTSFSFDASWEQLFWLLNGHSVYVINEEMRRDPQQLLAYYDDQRIDGFDVTPSYGQVLVDEGLLERDRPAGRSVSADATGVVFVSLGGEAVPERLWQQLRDAPGVESYNLYGPTEYTINALGADLADSPNPSVGTPIFNTRAYILDQNLQFALPGVPGELYLAGAGNARGYWEQPALTAERFVACPWEPGARMYRTGDLARWNDEGRIDYLGRADEQTKIRGYRIEPGEIRDVLEAHPEVVRAEVIAADHPSGGKFLAAYVTTARIDTSDDALRRSLREHAAQHLPDYMIPASYNRLETFPLTTTGKLDRKALPVPDLGQSTAHGRAPATDTEQDLLAAIRDLLGLSDEVRLSVEDDFFQLGGDSILSIQLVSRMRRMGVVISAADVFSTRTVAGLARLSDARQSESATEHTAPLKDLRSSRLWPIANKEVDLPGFSTLVQAVTFVVPAGMTHETLLRVLNRVVAHHVTLGGRLVADADGSFRFEVPARSPEVAKDRMVIEALGPAWPDPTWRSGNRARVEELARSLHLDAGILWRAVWYKGSADATSRLLLVMHHLVVDGVSWRVLGDDLRQAWELETGRTAEPLLPVGTSLLNWAEMLAGRAAEQDVRAQTEYWAETVTADDPLLGSRALDAALDTRATAEVLTIRVPAKVAGPVLKEVPGALAAEINDVLLGSLTIAVGAWRARRGVGHRRALIGLEGHGREETFVPGSDLSRTVGWFTTWFPVGLDTVDIDPVTALTDPGASADVVRHVNEQLRAVPDRGIGYGVLRELAPDGAGRLVDGVVPQIGFNYLGQFGPGSAVRDSAWEMAPEAPGIVGSADRTMPLIAVLDISLMAVQSAENNEWTLRGNIVYAAGILSEAEVSELQELWVQSLETLASYTTETGVWNSGFGKPEENHEDQR
>NC_009921.1|WP_020460623.1|3601512_3601767_-|phosphopantetheine-binding-protein
MKISDNRVLADVADVLYIEANDVDQDADLRAQGMDSVRLMELVERWRSAGAEGIDFITLAEDQRVSRWLEVLAASTNDDAESSE
>NC_009921.1|WP_020460622.1|3600597_3601440_-|alpha/beta-fold-hydrolase
MPTMLVNGIALHYDEYGDGADPLVVLVMGTGGKGQVWTPHQVPALVEAGYRVVTYDNRGISPVPGQTATSCPDIVVPELVDDLAALIERFGAPAHVIGTSLGARVVQELVLERPDLVCRAVAMGGHARIDDVGQMLTRGEQELFDQKIVLPKAYKAAVDALLNLSPATLRDETKSNDWLALLEYSAVPASSGERGQLGASERLGDRGDAYRAITRPLLVIGFADDLMIPAHLGRELADIVPTARYVEVPDTGHYGYLEQPEAVNRLILDFLAEPEGSAVG
>NC_009921.1|WP_020460621.1|3599272_3600592_-|lysine-N(6)-hydroxylase/L-ornithine-N(5)-oxygenase-family-protein
MNEVKTRSDAVGMLPDVVDIIGIGFGPANLSLAIAIEERNGARPAADRVTARFVEAQPRFGWHDGMLLPGTTMQISFLKDLATMRSPTSSYSFLNYLHERGRLSDFINLKSFFPTRLEFRDYLAWAAARVNVPVSYGARATRVDHDGAAFTVMVSGGGGGREAVRARSVVVATGLRPVLPDGIEAGPRVFHNHGLLSSLDRLPSTPHGRFLVVGAGQSAAEVAAYLHDTYPAAEVHASIRSFGYVPSDNTPYANRIFDPASVGEYYTAPPDVKQQLLRRHWSTNYAAVDAELIDDLYRREYDEKLRGVRRLFVHRVTEVESLREGPGGVVVALRDLGARARTPLEVDAVVFATGFRPSDPHGLLGDGIDLEAALDGDEPLVARDYSLRVPGLEGRIFLSGGVQHSHGLSSSLLSTLAVRAGEILEAAVPTHRSHMATGS
>NC_009921.1|WP_020460620.1|3598987_3599239_-|MbtH-family-protein
MAKNPFDDEDGTFYALINHEEQYSLWPTFKPVPGGWTIVYGEPDGRPRQEVLDWIDQTWTDLRPKSLRDFIASHEVARAATGE
>NC_009921.1|WP_020460619.1|3597626_3598373_-|4-hydroxy-tetrahydrodipicolinate-reductase
MTQVAVLGARGRMGEASVRAIEATSDMSVVAEIDVDDNLREIVEKKADVVLVFSPPGVAHEQVQWCIEQGIHVVVGTSGFDEDAVQQIRAALIERDEVNVFVVPNFSVGAVLLTQFAAKAAPLFESVEIIEMHHPDKVDAPSGTAQHTAELIAHARAKAGSAPSPDATSRDPHGTRGGRIEEVNVHAVRVRGFMSSQEVLFGSEGEILRLRYDSVTRESLMPGVLAALRAVPGLPGVTIGLETVLSLG
>NC_009921.1|WP_020460618.1|3595868_3597494_-|AMP-binding-protein
MSIQPLTLDGVVPYPPKSVAQYLTKGYWHDQTLPELLFAAAERYPDKLAVIDRDTRLSYRQLTDEVLRLAAGLQDLGLGRGDRVVVHLPNTYEYIAFVFALWELGVIPVVAPIAHRRAEIEHFIEIAEARTYITVASDSGTDLAALAADLKGRWAHLEHTVILDRGGGGAEYDALLSKGSLEHVRRCSPQDVALLQMSGGTTGVPKLMPHTHHTYGYALRRSVGERGITERTVHLLVMPICHSMSTRSPGFLGAFSVGATIVIAPNGSPDAAFPLIEKHRANRVTLVPPILLAWLNSSLRDAYDLSSMQVIMCGGAKLSEEVARRVEPELGMELSQSFGMGEGLVVSNPPDVDRETSVRYQGRPASEADEIRVIDDEGNDVPPGAPGHLLTRGPSVIRGYYRNPEQNALAFTSDGFYRTGDIVERDERGFMRVVGRSKDQINRGGEKIAPEELENAFLAHGGVHNASVIGIDDEVLGERIKAYLIPRSPEDVADLTLSKLRRFLQEWGLATFKLPDFVEVVDKFPYTAVGKVSKRLQREQN
>NC_009921.1|WP_020460617.1|3594354_3595803_-|FAD-binding-dehydrogenase
MHNADVVVVGGGNAGYCTAHAAAERGRRVLLLEKAPRALAGGNSYYTLGATRMVHAGLGDLLEILEPDERHARTEVPPYSAAEFLADLDRITEGRDDKELAAAVIEGSRDAVRWLHELGLRFRLMYERQAHENADGTFVFWGGTHVCNVDAGPGLMSDHERVASRLGVEMRYGCPVTGLMTNGGSVVGVRAGDQEFPAESVVIASGGFEANAQWRQRYLGDGWQHAKVRGTPYNTGDLIGAALEIGADRGGDWSTCHSVPWDASYPENESNRMLTNRLSRYGYPLGIIVNAWGRRFLDEGADFRNYTYAKYGKVILEQPGSVAFQIFDANSRSMLNVYEYEMPGIIPVVANSVEELAAAIDVDVDAFARTVRDFNSSIDTSRPLDPTIKDGRGATVEPIKSNWASAIETPPYYAYPVTCGISFTFGGLRGDINGRVLDPSGAPIPGLFACGEALGGLFSGNYPTGAGLTAGMVVGRRTGSLA
>NC_009921.1|WP_020460616.1|3593124_3594351_-|NAD(P)-binding-protein
MISSQISTRVVIVGAGPVGMVCALALNRQGIPVTVLESEPVPVKDQRAATIHPSTLEMLDELGITEKITPHGLVSSTYRFHDRPTGELVAEFDLARLKDEIRFPYVLQYEQYKLTASIAEEYANGSDFDMRFSHALTGLTVAANGIEVEYASPAGTGRMTAAYVIGCDGGRSTVRKLAGIEFEGFTYPERFIKIATRFDFKTVKSNLSLRNYFSDPYEWANLFKVRGETPEGLWRLILPIGQNEDDTTALSAARVERRLQKFFPKADPYHVEYARVYRVNQRVAGTFHKGRILLAGDSAHVNNPIGGMGMNGGIHDAINLAEKLPQVIHGRDGDDLLDLYSRQRRHAALNYVQAQTIANKRMLEERDPAVRRQNLDQLRCTAENLDSARAYMRRAALFDSLHDAASIT
>NC_009921.1|WP_020460614.1|3592018_3592441_+|hypothetical-protein
MLLQPKGLPEIPAQTVTVARAAFPRGTLAMRLRDRLAEVFVDEPFTGAFGIRGAPGLPPAVLSLVTVLQFTENLTDRQAAGMAVRAIDWKCALGAELTDTRVRRDGAVPVPGPAVRPRSGTGGLRPARGGLPWAGPDRRW
>NC_009921.1|WP_085950116.1|3623464_3624666_-|IS3-family-transposase
MTQRRRKFSPEFKDEAVKMVIETSRPISQVAVELGILEGTLGTWVAAYRRAHADEEPPPTVDERARLRELERQNRELRMENEFLKKAAGVLRQGSSVSDTFEFIDAEYAARTTTNTSAPAPSVIQMCAWLGVSRSGFYEWRDRPASATATRRGALATLVVRSFTASDGTYGYRRVHADLLAWGRPCSPELVRALMREQGLVPCQPRPWRHTLTEPGQTPAAIPDLLQRDFTADTPGTKMVGDITYIPTWEGWLYLATVIDCHTKAVIGWAMDDNYRTGLIETAITMAARNHQLTDGAIFHSDRGSNYTSTQFAATLKNLGIRQSVGRTGICYDNAMAESFFAALKNERVHRTAYPTREHARRDIARYIELRYNTTRRHSGLDYRTPQQVHDEYLKRQTAA
>NC_009921.1|WP_012157515.1|3624876_3625416_+|helix-turn-helix-domain-containing-protein
MRYATGGGLTPAGQVERERVRLAAADRFAAGATRTEVAREFKVTPKTAGCWYRAWESGGAAALRSTGPVSSCRLDDRDLARLEAILRRGPGVYGWTDQRWTLARVAQVIRREFGITYTVPGVWMLLDRNGWSCQLPVRRAVERDDTVVEEWKDRGWPAVKPPRRPGVPGSVSSTRQGRA
>NC_009921.1|WP_012157514.1|3625340_3625961_+|endonuclease
MAGGKTTAAARGAWVCFLDETGQGLRPPRGRTWARRGVTPVVRVPGRGGAGRVSVVGMVCYKPGQRARLVYRVRVSHGRSGERKGLCWADCRDLLLAAHVQLPGGRLVVVWDRLNIHLQAQMAAFLAAHTGWISVVWLPAYAPDLNPTEGAWSYLKRTTLVHLAARGIDEVFQAFKHGLKRMQYRPELLVGFLAETGLAWENLRSK
>NC_009921.1|WP_083788247.1|3629137_3629491_+|C40-family-peptidase
MVAVQFACTQIGKPYVWGGNGDPGFDCSGLTYAAYAAAGIDIPRTAQTQHDAGPPLPAGTPLEPGDLVFFGTQRNIHHVGISLGGTIMIDAPDFGRSVTIRDFQAFPDYAGASRPAQ
>NC_009921.1|WP_020460632.1|3629893_3630670_+|di-trans,poly-cis-decaprenylcistransferase
MPIRDLAYTVYARRLRASLKGAELPRHVGLIMDGNRRWARQMGMANPSLGHKFGADHVEDVLSWCEAAGIKHVTVFVCSTENLAHREDAEIAFLMRVIEQVVSDKIATPDPAWQMHIAGLLDALPDSTARALKNAEEVTRSCSTGAHVTLAVGYGGRQEVVDAFRALLHEQAETGGSLADLAETLTAEDVARHLYTAGQPDPDLVIRTSGEQRMSNFLLWQSAYSELYFCEAYWPAFREIDFLRALRSYAARGRRHGA
>NC_009921.1|WP_020460634.1|3631691_3632432_-|hypothetical-protein
MRKEVTQDVQNALTSDARVQRAARRYQRHRRLIPIVAQLLLTLPAVACAIVWPPFAPPGDVRGLATGGLAVLGGIAGLGFYSSRIAWALDRAPLAPASARVASHALALHRTLHDPDLTGIARHTEAVRLLYLLSHAAHRLARNLGDTIPGLAATDLATTAARDADTTRADLLDGVRRLLDAIASVQQMIRGPFGDHKVPSPPLPGPDPRESFERTAAGLDRAGRSALDLVTLALTTPAPNRPPYRR
>NC_009921.1|WP_020460635.1|3632609_3633140_-|transcriptional-regulator
MSTTSENRAYAHEVGARLRAIRTQQGHSLQQVETRSGGRWKVAAVGSYERGDRMINIEGLAALAAFYGVPVHHLLPGGRPDALPPQAARVVLNLPALARVPADDAGPLRRWVAEIQRERDDYAGRVLSIREGDLRTLATLYALDRNQLLDMLQQWKVLDPMSTIANTSDTAETQGP
>NC_009921.1|WP_020460636.1|3633679_3634159_-|hypothetical-protein
MNDATWTLVTDVVGRVQQSIRMTDYPAIVILDGDRRQILSDYDYVHGETTRTDFETRAADHARTLHARRFTFAVPQIIEMLPGGLQAHEFSVRPLRDGEQESVVWTAYDADDGVDYGWAPYTRRPAGQPIFDEPSTFHLPALPTDGFPGVHLLRLLTNE
>NC_009921.1|WP_157472643.1|3634444_3634747_-|hypothetical-protein
MMWDSAHAGARQQEAESGGEEAQQLRSRVQDPSMVIRLVGVVAVLTVTFMVFVAGIAETDPAASLRTRLGQEPALGVSLLLLVVIVTAAARFVGRHERLR
>NC_009921.1|WP_157472644.1|3634926_3635388_-|hypothetical-protein
MGASRPPAAHPPHRPRRPRRPRHAAPPSPAPRPTPGPGSPSKPRTVTKPPSGTEATPPRRTNPPTTNSEHQPFKIELSFTALDLDPTARLVEDNYRQRGVPLQFRSRDEVERLFDGLTLADPGLRLVHHWRPDGTAEGLSDAEVSVYGGVARK

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Crispr_ID: NC_009921_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009921_7

7953287-7953504

Orphan

Consensus_repeat	Method
CGCCACCGGGGGCGCGGGCGGCGGC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NC_009921_7

>merge|NC_009921|7|7953287-7953504|CRISPRCasFinder
CGGCGCCGGCGGCGCGGGCGTCCGCGCAGGACCGGTAGGACGCGGTCGCCGGGCGGGTGGGCCGCGCCTGGTCCGGGGGGCCCGACGGCATGGGCGTGGGCGCCGCCGCCTGCTCGGCGGCCGGCGTCGTCTCCATGGGGGATGTGGACGCCACCGGGGGCGCGGGCGGCGGCGCGACTGCCACCCGGGCGGGCGCCACCGACGGCCGCGGCACCGCC

>NC_009921|7|9|7953287-7953504|CRISPRCasFinder
CGGCGCCGGCGGCGCGGGCGTCCGC	GCAGGACCGGTAGGACGC
GGTCGCCGGGCGGGTGGGCCGCGCC	TGGTCCGGGGGGCCCGACGGCATGGGCGTGGG
CGCCGCCGCCTGCTCGGCGGCCGGC	GTCGTCTCCATGGGGGATGTGGA
CGCCACCGGGGGCGCGGGCGGCGGC	GCGACTGCCACCCGGGCGGG
CGCCACCGACGGCCGCGGCACCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009921.1\|WP_041255034.1\|7945965_7947330_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|99743
NC_009921.1\|WP_020463951.1\|7956831_7958334_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|274398
NC_009921.1\|WP_020463954.1\|7960028_7960910_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133060
NC_009921.1\|WP_020463953.1\|7959363_7960029_-\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NC_009921.1\|WP_020463955.1\|7961385_7962858_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NC_009921.1\|WP_049796076.1\|7944212_7944683_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_009921.1\|WP_020463941.1\|7943647_7944133_+\|tRNA-adenosine-deaminase-associated-protein	unknown	unknown	gnl\|CDD\|274869
NC_009921.1\|WP_157472873.1\|7955660_7956245_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020463945.1\|7948086_7949145_+\|TIGR03617-family-F420-dependent-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|132656
NC_009921.1\|WP_041256764.1\|7962967_7964074_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|225070
NC_009921.1\|WP_041255035.1\|7949207_7950395_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_009921.1\|WP_020463949.1\|7954268_7955207_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180993
NC_009921.1\|WP_157472874.1\|7965341_7966544_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NC_009921.1\|WP_020463957.1\|7964127_7965345_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_009921.1\|WP_020463947.1\|7950605_7952963_-\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319783
NC_009921.1\|WP_020463943.1\|7945171_7945816_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|225462
NC_009921.1\|WP_020463938.1\|7940547_7941216_-\|plasmid-partitioning-protein	unknown	unknown	gnl\|CDD\|226040
NC_009921.1\|WP_020463952.1\|7958398_7959388_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133029
NC_009921.1\|WP_020463939.1\|7941315_7942068_-\|cobalamin-biosynthesis-protein-CobB	unknown	unknown	gnl\|CDD\|225974
NC_009921.1\|WP_020463940.1\|7942064_7943318_-\|DUF1727-domain-containing-protein	unknown	unknown	gnl\|CDD\|223840

Protein	Function_ID	Function_description	E-value
NC_009921.1\|WP_041255034.1\|7945965_7947330_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|99743	cd06450, DOPA_deC_like, DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.	8.95432e-78
NC_009921.1\|WP_020463951.1\|7956831_7958334_+\|sugar-transferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	1.79798e-145
NC_009921.1\|WP_020463954.1\|7960028_7960910_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133060	cd06438, EpsO_like, EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.	3.4392e-17
NC_009921.1\|WP_157472874.1\|7965341_7966544_-\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	8.167e-31
NC_009921.1\|WP_020463955.1\|7961385_7962858_+\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	3.9073e-176
NC_009921.1\|WP_049796076.1\|7944212_7944683_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	1.64509e-60
NC_009921.1\|WP_020463941.1\|7943647_7944133_+\|tRNA-adenosine-deaminase-associated-protein	gnl\|CDD\|274869	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein. This model describes a protein family about 200 amino acids in length with only five invariant residues, including an Arg, a Ser-Asp pair, and two Gly residues. Members always are found exclusively in Actinobacteria, and always adjacent to homologs of TadA, a tRNA-specific adenosine deaminase from Escherichia coli. Homology, phyletic pattern, and gene neighborhood together suggest a housekeeping function in tRNA metabolism. [Unknown function, General].	1.31315e-34
NC_009921.1\|WP_020463953.1\|7959363_7960029_-\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	1.7269e-39
NC_009921.1\|WP_020463945.1\|7948086_7949145_+\|TIGR03617-family-F420-dependent-LLM-class-oxidoreductase	gnl\|CDD\|132656	TIGR03617, F420_MSMEG_2256, probable F420-dependent oxidoreductase, MSMEG_2256 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by MSMEG_2256 from Mycobacterium smegmatis. [Unknown function, Enzymes of unknown specificity].	4.24044e-167
NC_009921.1\|WP_041256764.1\|7962967_7964074_+\|amidohydrolase-family-protein	gnl\|CDD\|225070	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	2.48498e-11
NC_009921.1\|WP_041255035.1\|7949207_7950395_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.63341e-92
NC_009921.1\|WP_020463949.1\|7954268_7955207_-\|SDR-family-oxidoreductase	gnl\|CDD\|180993	PRK07478, PRK07478, short chain dehydrogenase; Provisional.	6.0447e-68
NC_009921.1\|WP_020463957.1\|7964127_7965345_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.16093e-28
NC_009921.1\|WP_020463947.1\|7950605_7952963_-\|copper-translocating-P-type-ATPase	gnl\|CDD\|319783	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B. The mammalian copper-transporting P-type ATPases, ATP7A and ATP7B are key molecules required for the regulation and maintenance of copper homeostasis. Menkes and Wilson diseases are caused by mutation in ATP7A and ATP7B respectively. This subfamily includes other copper-transporting ATPases such as: Bacillus subtilis CopA , Archeaoglobus fulgidus CopA, and Saccharomyces cerevisiae Ccc2p. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_009921.1\|WP_020463943.1\|7945171_7945816_+\|NAD(P)H-binding-protein	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	6.74701e-44
NC_009921.1\|WP_020463938.1\|7940547_7941216_-\|plasmid-partitioning-protein	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	4.04421e-10
NC_009921.1\|WP_020463952.1\|7958398_7959388_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.1401e-58
NC_009921.1\|WP_020463939.1\|7941315_7942068_-\|cobalamin-biosynthesis-protein-CobB	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	1.38376e-61
NC_009921.1\|WP_020463940.1\|7942064_7943318_-\|DUF1727-domain-containing-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	2.5351e-29

>NC_009921.1|WP_020463947.1|7950605_7952963_-|copper-translocating-P-type-ATPase
MSSLTTSGTDDRLELDLMIGGMTCASCAARVEKRLNGLDGVTATVNYATEKARVTFPADLPAARLVEQVKAAGYTAALPPPPTPVQPPDGANDRRGPVASAASDAASETSSVGGRDAADERTRALRDRLLVSAALSVPVIVLAMVPAWQFTYWQWLSLTLAGPVVVWGAWPFHRAAWANLRHGATTMDTLISMGTLAAFGWSLYALFLGDAGEPGMTHGFSLDVSRGAGTDSIYLEVAAGVTTFILAGRFFEARAKRRAGAALRALLDLGARDVSVLRDGRETRVAIGALAVSDLFVVRPGEKIATDGTVVEGVSAVDTSMLTGESVPVEVRPGDAVVGATLNAGGRLVVRAGLIGADTQLAQMARLVEEAQSGKAPVQRLADRVSGIFVPIVISLAVVTFGYWWGAGEGLTAAFTAAVAVLIVACPCALGLATPMALMVGTGRGAQLGILIKGPEVLESTRRVDTIVLDKTGTVTTGQMTLLDVAVAAGEDRAEVLRFAGAVEHASEHPIARAISRAAAGSLPSVAEFANLEGLGVRGVVEGRAVLVGRPRLLADWAQPLPAELARAAHSAEEAGRTAVAVAWDGRARGVLTVADALKPTSASAIGQLRGLGLHPMLLTGDNRTVARAVAAEVGIAPADVIADVLPADKIEVVRGLQAEGKVVAMVGDGVNDAAALAQADLGLAMGTGTDVAIEASDLTLVRGDLRSVADAIGLARRTLTTIRGNLFWAFAYNVAALPLAAAGLLNPMLAGAAMAFSSVFVVGNSLRLRRFAPRRGPDRPGLSG
>NC_009921.1|WP_041255035.1|7949207_7950395_-|cytochrome-P450
MTEDLYWDPFDKIIDVNPHPLWRRLRDEAPVYRNEKHDFYALSRHADVDAAHVEPETYSSAHGTVLELMGPEPFNTGQIIFMDPPTHTLLRVLVSRAFTPRRVGGLEGSIREICAELLDPQIGGGGFDYVQDFAAQLPSLVISKLIGVDEADREEIRQTIDQTFHIEEGKGMINDVSFAAQIKLHTYFSEQIDARRTAPRDDMMTGLAEAEITTDEGARRLTTSEAADFTNLLVAAGTETVARLLGWAGDLLEAHPDQRAELAADPSLLGNAVEETLRYESPSPVQGRVNTREVELHGTTIPAKSRILLLTSSANRDERKYPDADRYDIRRNFDSHLAFGRGPHFCLGAALARMEGRIALEETLRRFPNYEVDRDNAVRLHTSTVRGYEKLPIKV
>NC_009921.1|WP_020463945.1|7948086_7949145_+|TIGR03617-family-F420-dependent-LLM-class-oxidoreductase
MKVDSTLGSLDIAAGQARAAQAAGYDAIWTGEVNQDPFLPLTLAADATSAIELGTSITVALSRSPMSLAYTAHDLHGFSGGRLRLGLGSQVKAHITRRFSMPWGRPAPQLREFVLALRAIWSSWSEGTPLAFEGEYYRHTLMPPAFVPKPHPFGPPQVLLAGVGDVMTRVAGEVADGFLCHWFTSPRWIREHTVPALLAGRQRAGRTLDGFDIVAGGFVATGTDQEITEGLARMRAQISFYGSTPAYRAVLELHGWGDLGSELTALSKQNRWTEMAALIDDDVVETFGIVAAPADVPARIAERLGGLATRTTFTPPPSFGPEQTREILAAIQAIPTAAPTTGAAGRHRTGPA
>NC_009921.1|WP_041255034.1|7945965_7947330_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MPIFGAQRPELVQAVVDYARTRMSLDPVPLDGPSPPAELSARAGRTITPEGIGGLAALRVFDEVLSRACISADHPRNLAFIPAAPTRAAILFDLVVGASSIYGGSWLEGGGAVHAENEALRWLSDLVGFPPGAGGVFVQGGTVGNVSALVAARHAVRARRAARGLPQPPRWRFLCGSEAHSSLRQAAEVMDVDLVVVPTGDDGRLTGGAVATALDELAGDGGVFAVVATAGSTQFGIVDDIRGVVDACRRHDVWVHVDGAYGLAGAAAASVRHLFDGIEETDSFIVDPHKWLFAPFDACALVYRDPAAARAAHAQQAGYLEVLDTPGAWNPSDYEVGLSRRARGLPFWFSLATYGTHAYGSAVERCLATARTAADHIRALPFVELVREPELSVVVFRRLGWPAESYHRWTERLLAEGLAFVTPTVHRQETVTRFAIVNPATTPEDIDLILATMA
>NC_009921.1|WP_020463943.1|7945171_7945816_+|NAD(P)H-binding-protein
MARIVVLGAGGQVGRSIVAEAVRRGHEVTAVDQDQNALKGVPRQATAVTGDVTGRDMVQQQAQNADVVVVALAGCTRPEHANTARAVVEVANKLGAKAPAVIHIGNGGLLENADGERIVDTQEFPAAERKEALDQADALDVLRAAKHNLKWTCIVPPPRNFGPGRRREAYRTAGDRPVTDAQGNIGISYEDFAFAVLDEVEKPRFRNKRYTVGY
>NC_009921.1|WP_049796076.1|7944212_7944683_+|nucleoside-deaminase
MGLALAEADLARAAGDVPVGAVVVAADGAVLGRGHNAREAAGDPTAHAEVVALRQAAARLGSWRLTGATLVVTLEPCTMCAGALVLARVDRLVYGAVDDKAGAVGSLWDVVRDRRLNHRPEVVAGVRGQECSEQLAAFFADRRTQRRDARRPRTPD
>NC_009921.1|WP_020463941.1|7943647_7944133_+|tRNA-adenosine-deaminase-associated-protein
MTTKGIAIARDGERWTAHDLDIADMEDLDALVDAMHDLSSGTVIAFVEEDDEYLAIVRIGAQDPDPGVFLSDRRALLSSDLAERLFADALPSMVALEDDSEDDAPVGQASPVGDLDLLADLGTTADALLELIAEEGMLPADVISAVSERAGAGEIFDEVRG
>NC_009921.1|WP_020463940.1|7942064_7943318_-|DUF1727-domain-containing-protein
MMTPLPRRRFSARTQAALAVERLAAEASRRLGRGSGEMIGGKLALRIAPDALAEVGSNRLTACVSATNGKTTTTRLLARALGTLGPVKSNSGGANMAPGVLAALSKPPYDAAAALEVDEIWLPKVARAIEPRVVLLLNISRDQLDRSNETRRIAALWRELGADLRDTVVVANVDDPLVAWSAMTWSRQIWVSAGQNWTADAMVCPQCARLLHRNATGWWCECGLARPEPIVSVAGLGELMWFGRRIPAHIDLPGRVNLANAAMAAAAAREFGVDVEDALAAMRGIGDVQGRYQEVPLGPDGKLARLLLAKNPAGWVEMMELLNSAPPRPVLIDFNSQTADGRDPSWIWDVPFERLAGRQVLVTGGRKEDMSVRLAYAEVPHTVHADAEDAATAANDKALDVVANYTAFRDLLVRTTR
>NC_009921.1|WP_020463939.1|7941315_7942068_-|cobalamin-biosynthesis-protein-CobB
MSRESATRIALIYPELLGTYGDGGNAIVLAQRLRWRGLRAEIVEVPAGEVVPADCDIYLLGGGEDEPQVLAADGMRRNRSLTRAVSGGAAVLAVCAGYQVIGASFPAGNGRVHEGVHLVDMETRRSFDPPDVPPPPRAVGDIVVEPDQRLGLPTLYGYENHGGRTRPLPGSRGIPLGTVRLGVGDGTPARTDGIVDGKVIGTYLHGPVLAQNPALADLLLTWVHGRLAPLDAPVEADMLRRARARALAGG
>NC_009921.1|WP_020463938.1|7940547_7941216_-|plasmid-partitioning-protein
MWFGWIVASNPLAGWWGKNKRNVIIAGVALVAIWWLVAANGRPKVERVTIPDGYPSADRELLVQAPSKPNDPLPLVIILHDDNTDASSLEHDSDASSLANRRDFALAFPEAVAGTWRLDDPNGADQQYLRDVVRYMDEERTDIDLNRIYVWGIGEGARLALLAACSPGPPVYAAVGVVGQFEAEPGPTCDNVTQHGRVAETDWDKKVSSTLWDFSRDLRRKV
>NC_009921.1|WP_020463949.1|7954268_7955207_-|SDR-family-oxidoreductase
MTKDHRGARPPGRRSLLAGAAGLVTTVAAATAVPAGAAAAAPTPAPAPIPAPARRFAGKVVLVTGATSGIGRAAAIAFAREGARVGFCGRREELGRRVEEEIRAAGGEATYTRADVRDPAQVESFVAGVADRYGRLDVALNNAGTQIVKPLHEMTVEEWDDTAHTNTRGVFLAIKYEVPPMRESGGGVILVTGSANEFASRPGLGAYSASKGGVTGLVRTAALDYGQDNIRVAALSPGTTDTGLVDRRRPPNITDEQWAAGKAQYGADNVDALRRMARPEEMAAAALALASPDMSFLTGTSVLVDGGMLAGL
>NC_009921.1|WP_157472873.1|7955660_7956245_+|hypothetical-protein
MRSNIGTSASPQLDNIFSDVPHDVVGQISPDQTLELIRLTAKVLLNGIDEVMDDASTSSLRADLERYSRKVAFSAATVCAKLAENRSRAAAQRQTLLVKILVNGDEEQTAERDSGLFPLGQPVRVIGIVPRLDEAELLVHEVARALDRHRVTVCAAVHGRVVLAVLPAAAGGALDHRVQALASGQILVSLEICW
>NC_009921.1|WP_020463951.1|7956831_7958334_+|sugar-transferase
METDAVPTVLGGDAPVPAIPRQRCPDEWPAAGSQRWKARLCTQLVVIDTLAIVVAIVCAYLLRFGIEAEATARGMWYLSIGTCIALAWLVMLGATDAYATRYLGVGTEEYRRISVGTFRLWGATTIGCYVLRAEVARGFCLIALPLGLLLLLTGRALARLRLVSVRRTGHARHRVVVVGDSRSVLELVGEFHHEPAAGFDVIGVCVPKGARRPDGNVGAPVLGSLEQVSSVVAATGADTVVVTSSASLDIETAKGIAWELEGTGVDLVVAPPLGGIAGPRVSLRPVAGLPLLHVEEPVFTGWRKFAKNMLDRALAAVALVVLCPLLLAVVLLIRFDSSGPALFRQTRTGKDGRDFEILKFRTMYVDAEQRRAVLENHNEADGLLFKIRDDPRVTRVGRTLRRLSVDELPQFVNVLRGEMSLVGPRPPLPSEVARYSGPVHRRLKVKPGLTGLWQVSGRSELPWRDAVRLDLYYVENWSIMFDLIIILRTVRAVLGRSGAF
>NC_009921.1|WP_020463952.1|7958398_7959388_-|glycosyltransferase-family-2-protein
MAVDVSVLIVSYNTGEMTATCLESLEATSGGLRIEVIVVDNASTDGSAEIVRKRFPSVKLIELSSNIGFGRAVNLAASNALGNYLLLLNPDAVVLTGAVQNLLEFARANPRHGIYGGRTFDPQGAASHTSCFGAPTVWSHVCFGMGLSTVFRRSRVFDPESLGRWERDSVRTVGVVTGCLLLVRRALFEQLGGFDPRFFMYGEDVDLSVRARRAGWDPVITPDAVVIHHGGASSSNWTGKHVLVMKGKTTLARVHWTGWRSGLCLTMLWLGVTLRAMPTVASGGRSAGSGTSDWRGLWHRRADWWSGYEQVAPEPAETGREESAARPPV
>NC_009921.1|WP_020463953.1|7959363_7960029_-|acyltransferase
MKRTLRAVCSVVDPRIWLHMLRILHFYGYSHVLPRRRVTMGAGVRMAPNTSIRNGERVSIGSGTRIGERCCLWAGDDHGRVDIGRHTLLGPGVFITASNYRMLPEIPATYQPKDEKDVRIGTDVWLGAGVTVVAGVTVGDGCVVGAGAVVTRSLPEGSIAVGAPARVVGRRGPTGRTPDVHPGTGRESDLAVFAIVAATAEGTADTGHGHREAEWLSTSQS
>NC_009921.1|WP_020463954.1|7960028_7960910_-|glycosyltransferase-family-2-protein
MVGPAASVVIPAHNEEAVIGRCLEALRSGVPRGCLEIVVVCNGCVDATAEKARAADVTVLVTPRSGKSAALNLGDESLTVFPRFYVDADVRVTGAALLAVADVLRDGGALAASPRLTLDMAGVSRLVRSYYRIWTRLPYVISDHIGSGVVGLAEKGRARFDRFPDAIADDYFLHALFAPGERRTVDDVNFTVYPARTLRALVIRMTRVYAGNMELRRRGLVSGVTSGRSGRSAAGQADWLRIVMADPRLIGAVPAYLSVALTAKVLARRKVCCGNLSSWERDDTSRTSTTGDI
>NC_009921.1|WP_020463955.1|7961385_7962858_+|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MDEQRVTGEQSITVIGSGYLGATHAVCMAELGCRVLAVDVDTAKVARLAGGTAPFFEPGLEPLLRKNLETGRLRFTTSYDEVAEFGDVHFLCVNTPQRGDGYAADLSYLDAAVAALAPRLRRDCLVVGKSTVPVGTAAALAGRLARLAPVGEGAELAWNPEFLREGFGVEDSLRPDRLVFGVTSLAAETRLRRVFAPIIDAGAPVIVTDYATAELVKVAANSFLATKISFINAMAEVCEATGADVLTLAAALGQDPRIGSRFLRPGVGFGGGCLPKDIRAFVARADELGVGRALSFLREVDTINLRRRTRVVDLVRAAAGASLDGCPIAVLGTAFKPNSDDVRDSPALDVAATLHRLGAAVTVYDPAANDNARRVHPELGYADSVPAAVAGADAVVVLTEWAQFAELGPVELAGLVRRRAVVDARHCLDRDRWRDAGWDYRAPGRPAALPWAPPAVPAQRAAQPHSPSQRHSQPKVPPRLAAGLATDQSF
>NC_009921.1|WP_041256764.1|7962967_7964074_+|amidohydrolase-family-protein
MLRAGTADPRLSRWQPRPELRVPATTVGRARWPAVDAHNHLGRWLCRDGGWMVPDVGAFLALMDELNIMTVVNLDGRWGAELAANLDRYDRAHPGRFLTYCHLDWSLLRSRRPSAALVASLRTSADAGARGLKIWKDLGLRVRDARGRRVLPDDPRLSEMFDVAGELGLPVMIHVGDPVAFFRRPDRHNERLDELRRHPTAARAGVSRRFPGCGGPGLPRLVEALESTVAAHPRTTFVAAHVGCLAEDLGRVERMLDAHPNLVVDISARLAELGRQPRVANRFITRFADRVLFGTDAFPPSADGFRGYFRLLETDDDHFPYSAEWPPPQGRWAVYGLGLEPDVLRRVYGTNAARLLPGVPDPEHAVHV
>NC_009921.1|WP_020463957.1|7964127_7965345_-|glycosyltransferase-family-4-protein
MRLGDGNAEGGRAGSLRVLYSISHPLGRPGIATTALYQVRGLIAAGFQVTVYCTSLAIPVPATHRVVQTMVARGVRIPNRAVGVRRAYAYHDWCLARELARRPHTYDVVHAWPRGCVRTLRTARRIGLPAFREVCSPHSRAAFDLAGREAAATGVRLPRRHAQRGRSWRLRLEEAEYAAASWLLCPSDHVVRTFIEHGVDAGRLVRHQYGFDPDRFRPALGPRPADRPFTVAFAGRGEPNKGLHYALRAWRDAGSPGTFLICGVIMPDYRARLGELLGLPGVRELGFVSDLDRVLRESDALVLPSVSEGSALVTLEAAGSGCIPVVSDACGSPTRHLIDGLVHRATDTAELTRHLRLLAEEPTTRARLRAACIAGRDAHTWARAGERLAEIYQAAVRARPGGAPG
>NC_009921.1|WP_157472874.1|7965341_7966544_-|glycosyltransferase
MAQPLRVLYSFPHPLGLPGIGTTAYHQVISLWRQGIEVQVYCTSVARPLPPGLPVRQTMALGGQRLPPRAVGVKRARYWHDRVVATALAREYFDVAHVWPGAAVHTLRACRRLGIPGLREAPNTHTAHACDVVARETARLGLTMQRNSSHAPNPRSLRLEDAEYGAATALLVPSDVAAETFVGRGMPAGRLVRHRYGFDPRTFPAPRAEEMERPGTRPLHVVFVGRCEPRKGLHLLLEAWRRSGLAGRARLTICGSFWSSYRALLAPALAQPGVETPGFVTDVPGLLRSADVLALPSLEEGSALVTYEAQASGCALLVSRQSGAVLTHGEQGLLHEAGDVDTLAAHLRQLEHDRSLLERLRCRALAARKSLTWNHAGTILHAAYERSRAAAVDGAGTDAA

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Crispr_ID: NC_009921_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009921_8

8145156-8145268

Orphan

Consensus_repeat	Method
GCCACACCCGCGTCAGGCTGGTGGCAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009921_8

>merge|NC_009921|8|8145156-8145268|CRISPRCasFinder
GCCACACCCGCGTCAGGCTGGTGGCAGGCCACAAGCACACCACCGCCCGCACCGCCCGCACCACCCGCACCGCCCGCACCGCCGGCCACACCCGCGTCGGGCTGGTGGCAGGC

>NC_009921|8|10|8145156-8145268|CRISPRCasFinder
GCCACACCCGCGTCAGGCTGGTGGCAGGC	CACAAGCACACCACCGCCCGCACCGCCCGCACCACCCGCACCGCCCGCACCGCCG
GCCACACCCGCGTCGGGCTGGTGGCAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009921.1\|WP_020464115.1\|8152573_8153539_+\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NC_009921.1\|WP_041255061.1\|8139168_8139672_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020464109.1\|8141932_8142727_+\|SpoIIE-family-protein-phosphatase	unknown	unknown	unknown
NC_009921.1\|WP_041255062.1\|8151354_8152545_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_009921.1\|WP_020464110.1\|8142723_8144190_+\|phosphotransferase	unknown	unknown	gnl\|CDD\|236090
NC_009921.1\|WP_020464107.1\|8140336_8140963_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NC_009921.1\|WP_020464116.1\|8153555_8154269_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_009921.1\|WP_083788385.1\|8138664_8139048_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_009921.1\|WP_157472892.1\|8136122_8138003_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NC_009921.1\|WP_041256815.1\|8138032_8138773_+\|response-regulator	unknown	unknown	gnl\|CDD\|225107
NC_009921.1\|WP_157473745.1\|8139668_8140340_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_020464108.1\|8141079_8141922_+\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_157472891.1\|8135665_8135872_-\|hypothetical-protein	unknown	unknown	unknown
NC_009921.1\|WP_041255065.1\|8161157_8161340_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225296
NC_009921.1\|WP_157472893.1\|8155322_8156066_-\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|379252
NC_009921.1\|WP_020464117.1\|8154280_8155348_+\|transposase	unknown	unknown	gnl\|CDD\|372671
NC_009921.1\|WP_157473749.1\|8149941_8150919_+\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_009921.1\|WP_020464122.1\|8161442_8163413_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NC_009921.1\|WP_083788388.1\|8156311_8157223_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|236612
NC_009921.1\|WP_020464112.1\|8147946_8148984_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476

Protein	Function_ID	Function_description	E-value
NC_009921.1\|WP_020464115.1\|8152573_8153539_+\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	1.12155e-87
NC_009921.1\|WP_041255062.1\|8151354_8152545_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.45173e-124
NC_009921.1\|WP_020464110.1\|8142723_8144190_+\|phosphotransferase	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	7.21888e-09
NC_009921.1\|WP_020464107.1\|8140336_8140963_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.0070266
NC_009921.1\|WP_020464116.1\|8153555_8154269_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	2.54406e-10
NC_009921.1\|WP_083788385.1\|8138664_8139048_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.20843e-24
NC_009921.1\|WP_157472892.1\|8136122_8138003_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	5.9816e-41
NC_009921.1\|WP_041256815.1\|8138032_8138773_+\|response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.19213e-41
NC_009921.1\|WP_157472893.1\|8155322_8156066_-\|IS701-family-transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	5.12084e-43
NC_009921.1\|WP_041255065.1\|8161157_8161340_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225296	COG2452, COG2452, Predicted site-specific integrase-resolvase [DNA replication, recombination, and repair].	4.47411e-06
NC_009921.1\|WP_083788388.1\|8156311_8157223_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|236612	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional.	2.40343e-23
NC_009921.1\|WP_020464117.1\|8154280_8155348_+\|transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	7.0584e-13
NC_009921.1\|WP_157473749.1\|8149941_8150919_+\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	5.02871e-24
NC_009921.1\|WP_020464122.1\|8161442_8163413_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.05031e-28
NC_009921.1\|WP_020464112.1\|8147946_8148984_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0

>NC_009921.1|WP_020464110.1|8142723_8144190_+|phosphotransferase
MSDQLSAEDYIKAVQRPDLVFNRPELTEARFDVHPMLGIPVPASGSTAVVFRATVGGTAQALRFFTREDASTQQRYTALNAWFTERGLTGDVAGCRWVDDAILINGRRWPMVQMEWVDGHTLDRHVEDLVEADDRAALATLAASWRDLLRRTQAARFAHGDLQHGNVLVDTAGQLRLVDFDSSWIAPFTGSSPPSEGGHRNYQPQNRPWGPWMDTFPGLVIYLSLLALAREPKQWEQLNDGENLLFRDRDYQPPHRTEVWSWVERLHDPRIDQLSARLRACCAPGWTATGDLEGLISGPVPWWTRTAAHPPAGASPEATTAQPEATTAPLPAVTAPVKVTTATVQGTTAPRQTTGAPPWPPPQPAPPAGQTVWWKQPPGQRPEPGRPAPAQPGPAQSGPAQSGPAQWAPVRAAGRRLRAVGWYLFAAVAAVATWGLGSALIAATLTGLAPSDEAAISALLALVPALIVLVLLVRRRRRRRRQPPGKAR
>NC_009921.1|WP_020464109.1|8141932_8142727_+|SpoIIE-family-protein-phosphatase
MILARSACFWLEKLGSAASEWEDAAACHDGDPATGVAPRYVVVDGATEAYDAIRWVAHLVGSFVADTGPDLTPDGLRAWFEQVQRLWVAGAPARFATVIEEHKFHTQGSFATFLGCRLTGLDGPRARWEAAALGDTVLFHVRAGRLLTHFPPIGADDFGLSPDGIGTRPEALGPMLRALELASGEVRAGDVLFIATDALAEWLLLEADRDEASLWAALAGLDHDAAFAAIVADQRAAGRMRNDDVTLLRVRLATAEPGALVVCL
>NC_009921.1|WP_020464108.1|8141079_8141922_+|hypothetical-protein
MYEQTFSRTNPGCIVFLLDRSDSMKQPWQSSGGTLAEGAARAVNKILLDLCVKSAKEVGGRARHYFDVGVFGYGACPVAGGEGVEPALAGQPIVPIPEVFDNPLRVEAEQSVDAVAGSRLPVWIEPVFGYRTPMCQAIATAGEHVYGWAASHPDSFPPIVINITDGMVTDSPFDGADLAEWAARLTSIETRHGRTLLFNIFLSPTVAPEALFPVTAADLPEPGPELFAISSTLPASMVANARGARVEIADGARGFVFNAGLATLVWFLEIGTRVADVRDR
>NC_009921.1|WP_020464107.1|8140336_8140963_+|hypothetical-protein
MTGRAAAGRAGRVPLLAASALVAAGLGWALLFRDRPFETTLAVVLGSAAVGTLLAALLGQPLTDRARPPEPDRPSFGPGTGGTQPQTAQPETAQQQTGQPETAQLVLPVGRPAGGAPPAGQWWTRDAPPAAAPAAATVPARPAPRDLGELRDSARVVQCPRCGAFRLDVQQTGAGYAFRCRVDGHEWAWRPGTAWPVAVVASRRRSTR
>NC_009921.1|WP_157473745.1|8139668_8140340_+|hypothetical-protein
MTKRRASLWRHPVLTPGYAAAIAFGAVALSGVVVPAASQSPVTDKPERVTGTVAGAPGFRLPAGLTVQIRHGAAMLAEAEIDTQGRWSVDVVPGDHEVCVVPPAAPVRVAGSDPASVCSRERIAAGTPTKVTLEQVQVVAKWTGEDGSFPTDSQVTISYAQRDLASKALDLNGRFTPSELPLNAVVCLDPPTGWWFADTKTRSQQCQSVTNPAADVLFRLEKS
>NC_009921.1|WP_041255061.1|8139168_8139672_+|hypothetical-protein
MKAVLTGFACVLAVIVVLVVVRGQIDTDSGSSGLGSGTGGPGPGGQPVVTTSVTPEVTATPDVTPSATPDSTGTPTVTQRGTTGTDRVDCSSIDSELKISAYGGMIRWNAASASGVSVSPSSGFLDEGESEVVRVGGSYSDGEGFTVVVSAPNQSGSGSVNYPFTCV
>NC_009921.1|WP_083788385.1|8138664_8139048_-|response-regulator-transcription-factor
MDRVAVGRVFIVDDSAPFRTVARALLESGGYQVVGDAGTGAEALAGVPEAGPDVVLLDIALPDMDGFSVCRALHRTAPDATVVFCSVRDAEHYGDAVERSSAAGFLPKSSLSAAALALIVGRRTERR
>NC_009921.1|WP_041256815.1|8138032_8138773_+|response-regulator
MPRVVLADDASLFRAALAELLERDGCAIVAQAGNADELLDAVERHRPDLAVVDIRMPPGYHLEGLRAAVLLRRSHPGTGVLLLSQHLEVAHLDELVGHTARGVGYLLKDRVTGPGFLDAVRRVAADGCAFDPEVVPLLVGGRGGPRDELAALSPREREVLALMAQGRSNNAIADELHLTTRTVETHVRGVFQRLALPDEAEHNRRVLAVLAYLRSVRRPTINASAAADRLDLGRNPAADDRSTASP
>NC_009921.1|WP_157472892.1|8136122_8138003_+|sensor-histidine-kinase
MEKAAVREHAGGRLLPGTAAVGEAPGGAAIDGAAAPAVDHRRKPAASMTGNGDDLRRRYGVPALAVVGAVIGAVVLWLSDGGRDEDTTSTLFSGLVGGLYLLTGSVTHLRRPGRLGLRMVMVGISWFAEDLQVSSYPVPHTVGMFFRCVASGCLVHLLLAFPEGRLRTRTERVVTGGVYVFVLGLVPLGVPFYRSLTPNLLLVANLSRMQDLLVDSTQVVFAVIVGGLLVRRWVVATPPARRVLAPVYGVGLVGSVASLLHPALTGSTALLINEVAHLATLGLPVAFLAGALRVRLGRTAVGDLLLQLPQMPPTELRHLLARALGDPTLRIAYPHPDHAGSDAVSTDGYLDADGQPVTPRPDDAVTPVRRGLRVVAVLLHDPALRADRHVLHAVTAAAALELDNQRLAAEVRAQLTEVRASRVRIVAAADEQRRRIERDLHDGAQQQLVTAALILRLARDRLGPAPPDPELGTLLRRAADGLEAAVKELRELARGIHPAVLTEAGLLPALRTLAARSAFPVQIVDGPALPPLPDPVAATAYFVAAEAVTNAAKHARANQIHVHVRTSGNRLLVTVADDGVGGADMSAGTGLLGLRDRTAALDGSLVVRSLPGAGTSVHAELPLEGS
>NC_009921.1|WP_157472891.1|8135665_8135872_-|hypothetical-protein
MNRVPGRTFSAVLTADGEYLGTLGPFEAASRWWADVEPVVTRIRQETGVPVMVLRLPPLRPRRAEQRR
>NC_009921.1|WP_020464112.1|8147946_8148984_+|recombinase-RecA
MVGPDREKALENALAQIDKQFGKGSIMRLGDDIRPPIQVIPTGSIALDVALGIGGLPRGRVVEIYGPESSGKTTVALHAVANAQTAGGIAAFIDAEHALDPEYAGKLGVDTDALLVSQPDTGEQALEIADMLIRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKITGALANSGTTAIFINQLREKIGVMFGSPETTTGGKALKFYASIRLDVRRIETLKDGTEAVANRTRVKVVKNKMAPPFRTAEFDIVYGGGISREGSLIDMGVEHSIIRKSGAWYTYDGDQLGQGKENARSFLRDNPDLANEIEKRIKEKLGLSPTLDADAPPPVPVNL
>NC_009921.1|WP_157473749.1|8149941_8150919_+|ISAs1-family-transposase
MLGALGAVPGRRRARGRRYGLASVLGLWFAGVLAGQQTFTAVWEWAVDLPAELLAGFGLTRGIPSERTTRRLVEGCDPVALDEALSGWIARAATVGDPGPRGLAFDGKTLKGTRSFTEAGAMSQEAVLEAVWHDTGITAGHQRVVGGDEIAALEALAGRLDLTDVLVTTAEKGHGRVEVRSLKALTVTTPKLVGFWGTKQVIELRRRTRRKKTVTAAPTVSEEVFYLVTSLPAEQAHPRDLAARARARGHWTVEAIHHVRDRVLDEDRHTARTANAPLAWAIARDTAISALRLTGHRSIAKALRTTARQPERVLQTIALISEKGL
>NC_009921.1|WP_041255062.1|8151354_8152545_+|PLP-dependent-aminotransferase-family-protein
MIASEVRALFAVASRPEIVSLAGGMPPVDVLPLEAVAATVSELVLSRGAVALQYGSAQGDPGLRARICDVMAMEGITDTHPDNVVVTAGSQQALDLLTRVFIDPGDVVVTEGPTYVTAINTFAAYQARIVHVPMDGDGLSPSALAETLSRLAAEGARVKLLYTVPTFQNPGGITLTPPRRAEVIELCRRAGVLVVEDNPYGLLSFTGEPVRAMRADAPDDVVYLGSFSKTLAPGLRVGWALAPPAVTARLVLAAESAILSQSMFTQLAVERYLATQPWAEQVKAFREMYRERRDAMLDALDEVMPPGASWTRPDGGFFVWLTLPDGVNTKAMLPRAIAARVAYVPGIGFYADGSGGTSMRLSYCYPPPERIREGVGRLGAVVRDELALRDTFGSRP
>NC_009921.1|WP_020464115.1|8152573_8153539_+|D-alanine--D-alanine-ligase
MTDLGRVLILAGGLSPEREVSLHSGGKLRDALTRIGVEAELADVDAATLPALAADPPDVVFPVLHGTSGEDGTIREVLDLYGLPYVGALPPACRVAFDKATAKAAVGAAGVATPEAVTLPREAFHDLGAAALIERIVARLGLPVVVKPRAGGSAFGVTHVDDAGGLAEALMSCFGYHDSALIEQAVAGVEIAIGVVDSGDGPVALPAVEIEPRAGVYDYAARYTAGATSFFTPARLHKDVLWAAAETALTAHRVLGLRDLSRTDMIVDRDGVAQFLEVNVAPGMTDTSTWPMGLHAAGLDFAVVCRDLAAHACDRRDVARC
>NC_009921.1|WP_020464116.1|8153555_8154269_-|class-I-SAM-dependent-methyltransferase
MPPAPRRRIAPGHRLKPTSGTPQAVEIGSGTGRVALPLARTGVPVVGIDASGEMTRQLHRSSMTEGLAVTAVEADAATFTVADPVPLIYAVFNTFFLLADRDVQARFLSQATKALGDGGSLVLETFVPRPGRLPDGPHPGVFPADSAVVVKQRSTDRVVLFAATNTVTERTFDYHEIVLADGAPVRMYPGRMLYLWPEEIDALAAAAGLRLAHRWGDWDATAYDPNTARKHVSVYRR
>NC_009921.1|WP_020464117.1|8154280_8155348_+|transposase
MSVRLLYLIFVRVCSWLVLLGRSSASKNIELLVLRHEVTVLRHTQPKPRWDWADRAVLAALTRLLPRALRAHRLVTPGTVLRWHRRLITRKWTHPQRTGRPPISTEIATLIKRLATENTTWGYQRIQGELLTLGHEVGASTIRRVLKTLGLPPAPRRHTDTTWRQFLRTQAATMLAADFFHVDCAVTLRRLYCFFVLEVGSRTVHILGVTAHPDGPWTTQQIRNLLMDLGARAADFQFLVRDRAGQFAASFDAVLADAGITTVTIPPRTPRANAYAERFVLTVRTEVTDRMLIFGERHLRTVLADYAAHYNGQRPHRGCDLQPPRPDHPIADLTKEQIKRRPILGDLINEYERAA
>NC_009921.1|WP_157472893.1|8155322_8156066_-|IS701-family-transposase
MPGRGTATGDHHGFVRTRQDLPVAAGHSIDSDHLRSEFEGLLGLVDPRFARAATRRRVRSFLLGLMAGLGRANCWTLAEHAGEDSPHGMQRLLARAVWDADAVRDDLRGYVVDRLGTAGAVLVVDETGDLKKGTATVGVQRQYTGTAGRIENAQVAVYLTYATDRGQAFIDRALYLPRSWPGDPARCAAAGVPEGTGFATKPALVRRTLTRSLDAGVATGWVAADVWGARTRPPALTWSFRRLVRIR
>NC_009921.1|WP_083788388.1|8156311_8157223_+|helix-turn-helix-domain-containing-protein
MCQDIMPTTMASDHADCFRGRIDVSGLSGTTVVALTFSPLSGRRSPALIRHHDPEDYYLFMVHGSPIRLEQSGNVTCLTAGDMALFDTSHPLAADFLDHGRQKRVTLMRLPRASLPLPGGTTDCLLGNTLLTRTPTGALLGQFLSGFRENAAACGSAELHRLGRIGFDLAVTFLASHIDAQHTLPVETREHVLRARIDAFIEHNLGDRGLRPATIAAHHHISVRTLHQLFQGQPETVSAMIRRRRLERCKVDLLNPQLRHHTIGDISARWGFRHPADFSRAFRAAYGAPPRDLRHPESHGPCT
>NC_009921.1|WP_041255065.1|8161157_8161340_+|helix-turn-helix-domain-containing-protein
MTEFRHPTGEILGIGRTASYELARQGKFPVTVIRVGRRYIVPTSPLKQLLGIDTESDGHA
>NC_009921.1|WP_020464122.1|8161442_8163413_+|tyrosine-type-recombinase/integrase
MKGTLFKKYGCRDPETGRQLGRSCPRLRRANGGWRSDHGTWSYRVDLPRYPDSKRRLVSRGGFPTQGEAREELERIEALLAVADKGDKGDEGGLQKVADLIGNAITTGTPLPNPVDVKNRYRRSADLNPDITVQDWMTRWLASRKTIRPTTRQGYEAYIKVHIVPAIGTIRLDKLTVTHLDDMFTAIDNTNNDIRKARESDDPDIRRAAQRKRITGPATQQLVREVLRAALNDAIRRGLITHNPAKHLELASGKRPKALLWTDERVSRWRETGLRPSPVMVWTPAQTGRFLDHTQTDPLYPIYHLIAYRGLRCGESVGLHWDDIDFTHATLTIRWQVIQIGYATQLGRPKSDAGDRVISLDTNTLTVLRIARTRQHAARLAAGRDWPDTGLTFTHPDGQPIHPEHLTNRFHTLLDDAALPPISLHGLRHGAATLALAAGADLKAVQELLDHSTITLTADTCTHILPDLASEIAENTARLIPRARTPTTTRRPSPSTGPHQPRPGPTRAGLAPTPPTNPQKHPRRAHPPEPHAPPSPRPSSWVRWSTAGPLAQLAEQPAFNRRVSRPAAVANLDRHRLDLHRSKKRPSNASASGRVCAQCVLIVSSPAKRSPVAALRSGRTRPAERGGLAAIHQMSLIGMAGQHCCVGDHKPKSPEI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_009921_7	7.4\|7953460\|20\|NC_009921\|CRISPRCasFinder	7953460-7953479	20	NC_009921.1	6203717-6203736	1	0.95
NC_009921_7	7.4\|7953460\|20\|NC_009921\|CRISPRCasFinder	7953460-7953479	20	NC_009921.1	6156728-6156747	2	0.9

1. spacer 7.4|7953460|20|NC_009921|CRISPRCasFinder matches to position: 6203717-6203736, mismatch: 1, identity: 0.95

gcgactgccacccgggcggg	CRISPR spacer
gcgactgccaccggggcggg	Protospacer
************ *******

2. spacer 7.4|7953460|20|NC_009921|CRISPRCasFinder matches to position: 6156728-6156747, mismatch: 2, identity: 0.9

gcgactgccacccgggcggg	CRISPR spacer
gcgtccgccacccgggcggg	Protospacer
*** *.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009921_2	2.23\|1657039\|35\|NC_009921\|PILER-CR	1657039-1657073	35	NZ_CP016354	Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence	31405-31439	6	0.829
NC_009921_2	2.39\|1657026\|35\|NC_009921\|CRT,CRISPRCasFinder	1657026-1657060	35	NZ_CP016354	Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence	31405-31439	6	0.829
NC_009921_1	1.4\|607491\|31\|NC_009921\|CRISPRCasFinder	607491-607521	31	MN908693	Gordonia phage AnClar, complete genome	5649-5679	7	0.774
NC_009921_1	1.4\|607491\|31\|NC_009921\|CRISPRCasFinder	607491-607521	31	MK801725	Gordonia phage Yago84, complete genome	5160-5190	7	0.774
NC_009921_2	2.18\|1656708\|36\|NC_009921\|PILER-CR	1656708-1656743	36	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	1061119-1061154	7	0.806
NC_009921_2	2.34\|1656695\|36\|NC_009921\|CRT,CRISPRCasFinder	1656695-1656730	36	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	1061119-1061154	7	0.806
NC_009921_2	2.55\|1657740\|34\|NC_009921\|CRISPRCasFinder,PILER-CR	1657740-1657773	34	MN304815	Burkholderiales phage 68_11, complete genome	10823-10856	7	0.794
NC_009921_3	3.9\|1675010\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675010-1675045	36	MK878898	Gordonia phage Zameen, complete genome	35780-35815	7	0.806
NC_009921_3	3.9\|1675010\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675010-1675045	36	MK919483	Gordonia phage Suscepit, complete genome	35781-35816	7	0.806
NC_009921_3	3.9\|1675010\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675010-1675045	36	MK016492	Gordonia phage Bialota, complete genome	36412-36447	7	0.806
NC_009921_3	3.9\|1675010\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675010-1675045	36	MK820642	Gordonia phage Polly, complete genome	35223-35258	7	0.806
NC_009921_3	3.9\|1675010\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675010-1675045	36	NC_041883	Gordonia phage Attis, complete genome	32913-32948	7	0.806
NC_009921_3	3.9\|1675010\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675010-1675045	36	MK814755	Gordonia phage Antonio, complete genome	35780-35815	7	0.806
NC_009921_3	3.9\|1675010\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675010-1675045	36	MK875796	Gordonia phage Tayonia, complete genome	35780-35815	7	0.806
NC_009921_3	3.9\|1675010\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675010-1675045	36	MK801734	Gordonia phage LordFarquaad, complete genome	32894-32929	7	0.806
NC_009921_3	3.9\|1675010\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675010-1675045	36	KU963257	Gordonia phage Kita, complete genome	35789-35824	7	0.806
NC_009921_3	3.9\|1675010\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675010-1675045	36	NC_031251	Gordonia phage SoilAssassin, complete genome	32912-32947	7	0.806
NC_009921_3	3.9\|1675010\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675010-1675045	36	NC_031097	Gordonia phage Zirinka, complete genome	36400-36435	7	0.806
NC_009921_4	4.38\|1688990\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1688990-1689023	34	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	243216-243249	7	0.794
NC_009921_4	4.38\|1688990\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1688990-1689023	34	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	286924-286957	7	0.794
NC_009921_4	4.38\|1688990\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1688990-1689023	34	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	353725-353758	7	0.794
NC_009921_1	1.4\|607491\|31\|NC_009921\|CRISPRCasFinder	607491-607521	31	NZ_CP035513	Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence	279253-279283	8	0.742
NC_009921_2	2.6\|1655921\|37\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1655921-1655957	37	NZ_CP035418	Leisingera sp. NJS204 plasmid unnamed1, complete sequence	57447-57483	8	0.784
NC_009921_2	2.6\|1655921\|37\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1655921-1655957	37	NZ_CP038237	Leisingera sp. NJS201 plasmid unnamed3, complete sequence	78124-78160	8	0.784
NC_009921_2	2.9\|1656117\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1656117-1656150	34	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	481777-481810	8	0.765
NC_009921_2	2.9\|1656117\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1656117-1656150	34	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	7750-7783	8	0.765
NC_009921_2	2.16\|1656577\|35\|NC_009921\|PILER-CR	1656577-1656611	35	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	202212-202246	8	0.771
NC_009921_2	2.18\|1656708\|36\|NC_009921\|PILER-CR	1656708-1656743	36	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	701532-701567	8	0.778
NC_009921_2	2.18\|1656708\|36\|NC_009921\|PILER-CR	1656708-1656743	36	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	347012-347047	8	0.778
NC_009921_2	2.22\|1656972\|37\|NC_009921\|PILER-CR	1656972-1657008	37	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	319031-319067	8	0.784
NC_009921_2	2.22\|1656972\|37\|NC_009921\|PILER-CR	1656972-1657008	37	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	732521-732557	8	0.784
NC_009921_2	2.22\|1656972\|37\|NC_009921\|PILER-CR	1656972-1657008	37	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1130791-1130827	8	0.784
NC_009921_2	2.22\|1656972\|37\|NC_009921\|PILER-CR	1656972-1657008	37	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	389777-389813	8	0.784
NC_009921_2	2.28\|1657376\|34\|NC_009921\|PILER-CR	1657376-1657409	34	NZ_CP045122	Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence	121034-121067	8	0.765
NC_009921_2	2.32\|1656564\|35\|NC_009921\|CRT,CRISPRCasFinder	1656564-1656598	35	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	202212-202246	8	0.771
NC_009921_2	2.34\|1656695\|36\|NC_009921\|CRT,CRISPRCasFinder	1656695-1656730	36	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	701532-701567	8	0.778
NC_009921_2	2.34\|1656695\|36\|NC_009921\|CRT,CRISPRCasFinder	1656695-1656730	36	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	347012-347047	8	0.778
NC_009921_2	2.38\|1656959\|37\|NC_009921\|CRT,CRISPRCasFinder	1656959-1656995	37	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	319031-319067	8	0.784
NC_009921_2	2.38\|1656959\|37\|NC_009921\|CRT,CRISPRCasFinder	1656959-1656995	37	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	732521-732557	8	0.784
NC_009921_2	2.38\|1656959\|37\|NC_009921\|CRT,CRISPRCasFinder	1656959-1656995	37	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1130791-1130827	8	0.784
NC_009921_2	2.38\|1656959\|37\|NC_009921\|CRT,CRISPRCasFinder	1656959-1656995	37	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	389777-389813	8	0.784
NC_009921_2	2.49\|1657741\|33\|NC_009921\|CRT	1657741-1657773	33	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	943974-944006	8	0.758
NC_009921_2	2.49\|1657741\|33\|NC_009921\|CRT	1657741-1657773	33	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	313442-313474	8	0.758
NC_009921_2	2.54\|1657676\|34\|NC_009921\|CRISPRCasFinder,PILER-CR	1657676-1657709	34	MN586020	Microbacterium phage Megan, complete genome	1076-1109	8	0.765
NC_009921_3	3.2\|1674550\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1674550-1674583	34	NZ_CP039694	Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence	136656-136689	8	0.765
NC_009921_3	3.6\|1674814\|33\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1674814-1674846	33	NZ_KY000063	Agrobacterium fabrum strain CFBP6549 plasmid pTi_CFBP6549, complete sequence	168724-168756	8	0.758
NC_009921_3	3.15\|1675410\|34\|NC_009921\|CRISPRCasFinder,CRT	1675410-1675443	34	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	79547-79580	8	0.765
NC_009921_3	3.15\|1675410\|34\|NC_009921\|CRISPRCasFinder,CRT	1675410-1675443	34	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	110775-110808	8	0.765
NC_009921_3	3.15\|1675410\|34\|NC_009921\|CRISPRCasFinder,CRT	1675410-1675443	34	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	252791-252824	8	0.765
NC_009921_3	3.15\|1675410\|34\|NC_009921\|CRISPRCasFinder,CRT	1675410-1675443	34	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	297862-297895	8	0.765
NC_009921_3	3.15\|1675410\|34\|NC_009921\|CRISPRCasFinder,CRT	1675410-1675443	34	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	68915-68948	8	0.765
NC_009921_3	3.15\|1675410\|34\|NC_009921\|CRISPRCasFinder,CRT	1675410-1675443	34	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1258397-1258430	8	0.765
NC_009921_3	3.16\|1675474\|34\|NC_009921\|CRISPRCasFinder,CRT	1675474-1675507	34	KY979132	Acidovorax phage ACP17, complete genome	54832-54865	8	0.765
NC_009921_3	3.21\|1675804\|35\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675804-1675838	35	JN106172	Uncultured bacterium plasmid pAKD29, complete sequence	44971-45005	8	0.771
NC_009921_3	3.22\|1675869\|35\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675869-1675903	35	JN106172	Uncultured bacterium plasmid pAKD29, complete sequence	44971-45005	8	0.771
NC_009921_3	3.29\|1675410\|33\|NC_009921\|PILER-CR	1675410-1675442	33	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	110775-110807	8	0.758
NC_009921_3	3.30\|1675474\|33\|NC_009921\|PILER-CR	1675474-1675506	33	KY979132	Acidovorax phage ACP17, complete genome	54832-54864	8	0.758
NC_009921_4	4.18\|1687678\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687678-1687711	34	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	350853-350886	8	0.765
NC_009921_4	4.18\|1687678\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687678-1687711	34	NZ_AP018921	Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence	207161-207194	8	0.765
NC_009921_4	4.20\|1687809\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687809-1687842	34	NZ_CP030864	Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence	350853-350886	8	0.765
NC_009921_4	4.20\|1687809\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687809-1687842	34	NZ_AP018921	Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence	207161-207194	8	0.765
NC_009921_4	4.36\|1688860\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1688860-1688893	34	NZ_CP029986	Sphingomonas sp. FARSPH plasmid p01, complete sequence	193047-193080	8	0.765
NC_009921_4	4.38\|1688990\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1688990-1689023	34	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	820348-820381	8	0.765
NC_009921_7	7.2\|7953355\|32\|NC_009921\|CRISPRCasFinder	7953355-7953386	32	NZ_LR594663	Variovorax sp. RA8 plasmid 2	212395-212426	8	0.75
NC_009921_1	1.2\|607371\|31\|NC_009921\|CRISPRCasFinder	607371-607401	31	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	181018-181048	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_KY781949	Klebsiella pneumoniae isolate Kp41 plasmid pKp41M, complete sequence	68332-68362	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP014072	Klebsiella quasipneumoniae strain FDAARGOS_93 plasmid unnamed1	21391-21421	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP050846	Klebsiella pneumoniae strain Bckp206 plasmid pBckp206-1, complete sequence	18408-18438	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_KX783441	Klebsiella pneumoniae strain KP4368 plasmid pKP4368, complete sequence	63959-63989	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_KT935445	Klebsiella pneumoniae strain Kp6411 plasmid 6411TF, complete sequence	76783-76813	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_KX009507	Escherichia coli strain 06K2206 plasmid LM6771, complete sequence	5455-5485	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NC_019368	Enterobacter cloacae plasmid pEl1573, complete sequence	49818-49848	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP015071	Escherichia coli strain Ecol_743 plasmid pEC743_OXA48, complete sequence	7493-7523	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_KM406488	Salmonella enterica subsp. enterica serovar Paratyphi B strain R69 plasmid R69, complete sequence	14309-14339	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_KM406490	Salmonella enterica subsp. enterica serovar Typhimurium strain 202 plasmid pSEM, complete sequence	7500-7530	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_KP025948	Proteus mirabilis strain Pm-Oxa48 plasmid pOXA48-Pm, complete sequence	70609-70639	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_KM877517	Enterobacter cloacae strain CRE623 plasmid pIMP-HB623, complete sequence	131707-131737	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_KP975075	Citrobacter freundii strain MRSN12115 plasmid pMRVIM1012, complete sequence	15919-15949	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_KP294351	Escherichia coli strain CZD1527 plasmid pIGT15, complete sequence	73090-73120	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_KU315015	Serratia marcescens strain NCTC 50331 plasmid R1215, complete sequence	94337-94367	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP026156	Klebsiella pneumoniae strain B12(AN) plasmid pB12AN_1, complete sequence	56750-56780	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP011599	Phytobacter ursingii strain CAV1151 plasmid pCAV1151-83, complete sequence	30425-30455	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP037737	Citrobacter freundii strain CAV1857 plasmid pKPC_CAV1857-85, complete sequence	83530-83560	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NC_004464	Citrobacter freundii plasmid pCTX-M3, complete sequence	52831-52861	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP035217	Klebsiella michiganensis strain M82255 plasmid pKOCBH-C, complete sequence	57085-57115	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP042501	Enterobacter sp. E76 plasmid pE76_002, complete sequence	94494-94524	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP029447	Serratia marcescens strain CAV1761 plasmid pCAV1761-73, complete sequence	53729-53759	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP042509	Leclercia adecarboxylata strain E1 plasmid pE1_004, complete sequence	79963-79993	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP020530	Enterobacter cloacae strain 174 plasmid unnamed2, complete sequence	9351-9381	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC556214	Escherichia coli CEX24 plasmid pCEX24 DNA, complete sequence	7053-7083	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC556215	Escherichia coli CEX25 plasmid pCEX25 DNA, complete sequence	7053-7083	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC556216	Escherichia coli CEX14 plasmid pCEX14 DNA, complete sequence	7053-7083	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC556217	Escherichia coli CEX3 plasmid pCEX3 DNA, complete sequence	7053-7083	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC556218	Enterobacter cloacae CEX5 plasmid pCEX5 DNA, complete sequence	7053-7083	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC556219	Enterobacter cloacae CEX6 plasmid pCEX6 DNA, complete sequence	7053-7083	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC556220	Enterobacter cloacae CEX4 plasmid pCEX4 DNA, complete sequence	7053-7083	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC556221	Klebsiella pneumoniae CEX18 plasmid pCEX18 DNA, complete sequence	7053-7083	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC556222	Klebsiella pneumoniae CEX23 plasmid pCEX23 DNA, complete sequence	7053-7083	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP031566	Enterobacter hormaechei strain 2013_1a plasmid pIncLM-1301491, complete sequence	50727-50757	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NC_024997	Klebsiella oxytoca plasmid pACM1, complete sequence	43651-43681	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_LT994838	Klebsiella variicola isolate CNR130 plasmid CNR130, complete sequence	40209-40239	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NC_025134	Klebsiella pneumoniae plasmid pFOX-7a, complete sequence	9397-9427	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP042514	Serratia marcescens strain E28 plasmid pE28_002, complete sequence	85684-85714	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_LT985387	Escherichia coli strain 694 genome assembly, plasmid: RCS55_pI	56874-56904	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP029138	Klebsiella pneumoniae strain AR376 plasmid unnamed3, complete sequence	71821-71851	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP019841	Enterobacter roggenkampii strain R11 plasmid pASM2, complete sequence	69218-69248	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP045511	Salmonella enterica subsp. enterica serovar Anatum strain M-5360 plasmid p55k, complete sequence	52860-52890	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC508263	Klebsiella pneumoniae A1-3 plasmid pA1-3 DNA, complete sequence	49560-49590	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP010365	Enterobacter hormaechei subsp. oharae strain 34978 plasmid p34978-70.092kb, complete sequence	62173-62203	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP029599	Klebsiella quasipneumoniae subsp. similipneumoniae strain ATCC 700603 plasmid pDA33145-77, complete sequence	19604-19634	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NC_019063	Escherichia coli plasmid pNDM-HK, complete sequence	87294-87324	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	MG516907	Klebsiella aerogenes plasmid pEa1631, complete sequence	49818-49848	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP042532	Klebsiella aerogenes strain C9 plasmid pC9_002, complete sequence	85684-85714	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP022826	Klebsiella quasivariicola strain KPN1705 plasmid pKPN1705-3, complete sequence	65806-65836	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_AP019667	Klebsiella pneumoniae strain TA6363 plasmid pTMTA63632, complete sequence	86908-86938	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_LT994833	Klebsiella pneumoniae isolate CNR341 plasmid CNR341, complete sequence	39147-39177	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP031235	Escherichia coli strain Es_ST410_NW1_NDM_09_2017 plasmid pEsST410_NW_NDM, complete sequence	29402-29432	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	KP294350	Uncultured bacterium plasmid pARM26, complete sequence	85199-85229	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP011614	Klebsiella oxytoca strain CAV1335 plasmid pCAV1335-92, complete sequence	10870-10900	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP017932	Klebsiella oxytoca strain CAV1015 plasmid pCAV1015-76, complete sequence	17562-17592	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP017936	Klebsiella pneumoniae strain CAV1016 plasmid pCAV1016-76, complete sequence	32527-32557	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP018669	Klebsiella pneumoniae strain CAV1042 plasmid pKPC_CAV1042-89, complete sequence	75753-75783	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP018974	Escherichia coli strain Ecol_545 plasmid pEC545_KPC, complete sequence	38690-38720	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP018452	Klebsiella pneumoniae strain Kp_Goe_71070 plasmid pKp_Goe_070-2, complete sequence	27115-27145	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP011640	Serratia marcescens strain CAV1492 plasmid pCAV1492-73, complete sequence	5363-5393	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC536683	Klebsiella pneumoniae MyNCGM084 plasmid pMyNCGM084, complete sequence	78748-78778	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP048418	Citrobacter freundii strain CitB plasmid pB_CitB, complete sequence	54421-54451	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP045017	Klebsiella pneumoniae subsp. pneumoniae strain BK13048 plasmid pBK13048-2, complete sequence	56746-56776	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP053283	Escherichia coli strain SCU-308 plasmid pSCU-308-2, complete sequence	66154-66184	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP011632	Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-84, complete sequence	30743-30773	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP042574	Enterobacter hormaechei strain E5 plasmid pE5_003, complete sequence	84357-84387	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP042542	Enterobacter hormaechei strain C4 plasmid pC4_002, complete sequence	85684-85714	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP027148	Klebsiella pneumoniae strain AR_0363 plasmid unnamed5	20066-20096	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP014698	Klebsiella quasipneumoniae strain ATCC 700603 isolate K6 plasmid pKQPS2, complete sequence	60025-60055	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP011593	Klebsiella oxytoca strain CAV1099 plasmid pCAV1099-69, complete sequence	44289-44319	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP011656	Citrobacter freundii strain CAV1741 plasmid pKPC_CAV1741, complete sequence	43276-43306	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP014298	Klebsiella pneumoniae strain KP38731 plasmid unnamed2, complete sequence	52725-52755	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP042580	Enterobacter kobei strain C16 plasmid pC16_002, complete sequence	79963-79993	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	KU159086	Klebsiella pneumoniae plasmid pOXAAPSS2, complete sequence	3930-3960	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP011609	Citrobacter freundii strain CAV1321 plasmid pCAV1321-71, complete sequence	8204-8234	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	MN187903	Citrobacter freundii strain Cf164 plasmid pCf164_CTX-M-8, complete sequence	14238-14268	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP032170	Klebsiella pneumoniae strain AR_0076 plasmid unnamed3, complete sequence	19593-19623	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP032193	Salmonella enterica subsp. enterica serovar Senftenberg strain AR_0127 plasmid unnamed2, complete sequence	45290-45320	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP026497	Klebsiella pneumoniae strain 616 plasmid pKp616_2, complete sequence	53096-53126	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP044337	Enterobacter hormaechei strain AKB48 plasmid unnamed2, complete sequence	22304-22334	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP031216	Escherichia coli strain Es_ST80_L1_NDM_10_2017 plasmid pEsST80_L1_NDM, complete sequence	36395-36425	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP038457	Escherichia coli strain EC-129 plasmid pEC129_4, complete sequence	56541-56571	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NC_011641	Klebsiella pneumoniae plasmid pCTXM360, complete sequence	23111-23141	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP042526	Citrobacter freundii strain E11 plasmid pE11_002, complete sequence	85684-85714	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	CP020502	Serratia marcescens strain BWH-23 plasmid unnamed, complete sequence	70903-70933	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NC_019346	Enterobacter cloacae plasmid pNE1280, complete sequence	21085-21115	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP031322	Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018 plasmid pEsST2350_SE_NDM, complete sequence	14105-14135	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP029720	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed2, complete sequence	22586-22616	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP027699	Klebsiella pneumoniae strain KP30835 plasmid unnamed4, complete sequence	9845-9875	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP042490	Enterobacter hormaechei strain C15 plasmid pC15_002	3928-3958	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_LT985264	Escherichia coli strain 717 plasmid RCS51TR717_p, complete sequence	77422-77452	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_LT985279	Escherichia coli strain 676 plasmid RCS60_p, complete sequence	53661-53691	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_LT985241	Escherichia coli strain 721 plasmid RCS40_p, complete sequence	79323-79353	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC505604	Klebsiella pneumoniae A1-1 plasmid pKp1-1 genomic DNA, complete sequence	49560-49590	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	LC508722	Klebsiella pneumoniae A2-1 plasmid pA2-4 DNA, complete sequence	49560-49590	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NC_019889	Klebsiella pneumoniae strain 601 plasmid pNDM-OM, complete sequence	35948-35978	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	MT193824	Escherichia coli strain 19-AB01443 plasmid pOX-48-EC1443, complete sequence	30306-30336	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_MF156266	Escherichia coli strain 24-S11 plasmid pCESC2, complete sequence	71414-71444	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP021742	Klebsiella pneumoniae strain AR_0126 plasmid tig00000002jNODE_23, complete sequence	21497-21527	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP018449	Klebsiella pneumoniae strain Kp_Goe_33208 plasmid pKp_Goe_208-2, complete sequence	63390-63420	9	0.71
NC_009921_1	1.3\|607431\|31\|NC_009921\|CRISPRCasFinder	607431-607461	31	NZ_CP042568	Enterobacter hormaechei strain C44 plasmid pC44_002, complete sequence	85684-85714	9	0.71
NC_009921_1	1.4\|607491\|31\|NC_009921\|CRISPRCasFinder	607491-607521	31	GQ379227	Streptomyces phage phiSASD1, complete genome	14860-14890	9	0.71
NC_009921_2	2.4\|1655790\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1655790-1655823	34	NZ_LR134460	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence	260687-260720	9	0.735
NC_009921_2	2.9\|1656117\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1656117-1656150	34	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	123395-123428	9	0.735
NC_009921_2	2.13\|1656379\|35\|NC_009921\|PILER-CR	1656379-1656413	35	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	898736-898770	9	0.743
NC_009921_2	2.18\|1656708\|36\|NC_009921\|PILER-CR	1656708-1656743	36	NC_009717	Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence	241948-241983	9	0.75
NC_009921_2	2.19\|1656774\|35\|NC_009921\|PILER-CR	1656774-1656808	35	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	157982-158016	9	0.743
NC_009921_2	2.29\|1656366\|35\|NC_009921\|CRT	1656366-1656400	35	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	898736-898770	9	0.743
NC_009921_2	2.34\|1656695\|36\|NC_009921\|CRT,CRISPRCasFinder	1656695-1656730	36	NC_009717	Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence	241948-241983	9	0.75
NC_009921_2	2.35\|1656761\|35\|NC_009921\|CRT,CRISPRCasFinder	1656761-1656795	35	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	157982-158016	9	0.743
NC_009921_2	2.48\|1657677\|33\|NC_009921\|CRT	1657677-1657709	33	MN586020	Microbacterium phage Megan, complete genome	1076-1108	9	0.727
NC_009921_2	2.49\|1657741\|33\|NC_009921\|CRT	1657741-1657773	33	MN304815	Burkholderiales phage 68_11, complete genome	10824-10856	9	0.727
NC_009921_2	2.55\|1657740\|34\|NC_009921\|CRISPRCasFinder,PILER-CR	1657740-1657773	34	NZ_CP016458	Blastomonas sp. RAC04 plasmid pBSY18_2, complete sequence	150430-150463	9	0.735
NC_009921_2	2.55\|1657740\|34\|NC_009921\|CRISPRCasFinder,PILER-CR	1657740-1657773	34	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	943973-944006	9	0.735
NC_009921_2	2.55\|1657740\|34\|NC_009921\|CRISPRCasFinder,PILER-CR	1657740-1657773	34	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	313442-313475	9	0.735
NC_009921_3	3.2\|1674550\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1674550-1674583	34	KM400683	Mycobacterium phage Ariel, complete genome	82360-82393	9	0.735
NC_009921_3	3.2\|1674550\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1674550-1674583	34	MF919534	Mycobacterium phage Superphikiman, complete genome	82500-82533	9	0.735
NC_009921_3	3.2\|1674550\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1674550-1674583	34	NC_023690	Mycobacterium phage Courthouse, complete genome	82804-82837	9	0.735
NC_009921_3	3.2\|1674550\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1674550-1674583	34	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	43449-43482	9	0.735
NC_009921_3	3.4\|1674681\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1674681-1674716	36	NZ_CP016354	Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence	29329-29364	9	0.75
NC_009921_3	3.15\|1675410\|34\|NC_009921\|CRISPRCasFinder,CRT	1675410-1675443	34	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	944524-944557	9	0.735
NC_009921_3	3.15\|1675410\|34\|NC_009921\|CRISPRCasFinder,CRT	1675410-1675443	34	MK967392	Gordonia phage GrandSlam, complete genome	12426-12459	9	0.735
NC_009921_3	3.19\|1675674\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675674-1675709	36	NZ_LN831789	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE2	44905-44940	9	0.75
NC_009921_3	3.19\|1675674\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675674-1675709	36	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	260242-260277	9	0.75
NC_009921_3	3.29\|1675410\|33\|NC_009921\|PILER-CR	1675410-1675442	33	NZ_CP039919	Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626b, complete sequence	1756-1788	9	0.727
NC_009921_4	4.13\|1687343\|37\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687343-1687379	37	NZ_CP048050	Clavibacter michiganensis subsp. capsici strain 1101 plasmid pCM2_1101, complete sequence	135043-135079	9	0.757
NC_009921_4	4.13\|1687343\|37\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687343-1687379	37	NZ_CP006369	Aureimonas sp. AU20 plasmid pAU20b, complete sequence	368881-368917	9	0.757
NC_009921_6	6.1\|3618776\|38\|NC_009921\|CRISPRCasFinder	3618776-3618813	38	NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	156975-157012	9	0.763
NC_009921_7	7.2\|7953355\|32\|NC_009921\|CRISPRCasFinder	7953355-7953386	32	NZ_CP010057	Hymenobacter sp. DG25B plasmid, complete sequence	45829-45860	9	0.719
NC_009921_2	2.9\|1656117\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1656117-1656150	34	NZ_CP011276	Planctomyces sp. SH-PL62 plasmid pPL62-3, complete sequence	57504-57537	10	0.706
NC_009921_2	2.49\|1657741\|33\|NC_009921\|CRT	1657741-1657773	33	NZ_CP016458	Blastomonas sp. RAC04 plasmid pBSY18_2, complete sequence	150431-150463	10	0.697
NC_009921_3	3.2\|1674550\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1674550-1674583	34	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	624332-624365	10	0.706
NC_009921_3	3.2\|1674550\|34\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1674550-1674583	34	NZ_AP019633	Enterobacter asburiae strain 1808-013 plasmid pEAS1808-013-1, complete sequence	29739-29772	10	0.706
NC_009921_3	3.8\|1674944\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1674944-1674979	36	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	391078-391113	10	0.722
NC_009921_3	3.8\|1674944\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1674944-1674979	36	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	185437-185472	10	0.722
NC_009921_3	3.15\|1675410\|34\|NC_009921\|CRISPRCasFinder,CRT	1675410-1675443	34	NZ_CP039919	Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626b, complete sequence	1755-1788	10	0.706
NC_009921_3	3.15\|1675410\|34\|NC_009921\|CRISPRCasFinder,CRT	1675410-1675443	34	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	274355-274388	10	0.706
NC_009921_3	3.19\|1675674\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675674-1675709	36	AM419438	Archaeal BJ1 virus complete genome	13509-13544	10	0.722
NC_009921_3	3.19\|1675674\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1675674-1675709	36	NC_008695	Archaeal BJ1 virus, complete genome	13509-13544	10	0.722
NC_009921_3	3.29\|1675410\|33\|NC_009921\|PILER-CR	1675410-1675442	33	MK967392	Gordonia phage GrandSlam, complete genome	12426-12458	10	0.697
NC_009921_4	4.13\|1687343\|37\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687343-1687379	37	NC_015377	Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequence	68001-68037	10	0.73
NC_009921_4	4.15\|1687478\|37\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687478-1687514	37	AB863625	Ralstonia phage RSK1 DNA, complete genome	28920-28956	10	0.73
NC_009921_4	4.15\|1687478\|37\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687478-1687514	37	MN996301	Ralstonia phage RpY1, complete genome	12839-12875	10	0.73
NC_009921_4	4.18\|1687678\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687678-1687711	34	NZ_AP022611	Mycolicibacterium madagascariense strain JCM 13574 plasmid pJCM13574	41224-41257	10	0.706
NC_009921_4	4.18\|1687678\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687678-1687711	34	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	113335-113368	10	0.706
NC_009921_4	4.20\|1687809\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687809-1687842	34	NZ_AP022611	Mycolicibacterium madagascariense strain JCM 13574 plasmid pJCM13574	41224-41257	10	0.706
NC_009921_4	4.20\|1687809\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1687809-1687842	34	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	113335-113368	10	0.706
NC_009921_4	4.33\|1688664\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1688664-1688697	34	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	457541-457574	10	0.706
NC_009921_4	4.33\|1688664\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1688664-1688697	34	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1551362-1551395	10	0.706
NC_009921_2	2.6\|1655921\|37\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1655921-1655957	37	MK838113	Aeromonas phage LAh_7, complete genome	21996-22032	11	0.703
NC_009921_2	2.15\|1656510\|37\|NC_009921\|PILER-CR	1656510-1656546	37	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	2095232-2095268	11	0.703
NC_009921_2	2.15\|1656510\|37\|NC_009921\|PILER-CR	1656510-1656546	37	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1532067-1532103	11	0.703
NC_009921_2	2.24\|1657104\|37\|NC_009921\|PILER-CR	1657104-1657140	37	NZ_CP033072	Streptomyces sp. Z022 plasmid unnamed1	57604-57640	11	0.703
NC_009921_2	2.31\|1656497\|37\|NC_009921\|CRT,CRISPRCasFinder	1656497-1656533	37	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	2095232-2095268	11	0.703
NC_009921_2	2.31\|1656497\|37\|NC_009921\|CRT,CRISPRCasFinder	1656497-1656533	37	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1532067-1532103	11	0.703
NC_009921_2	2.40\|1657091\|37\|NC_009921\|CRT,CRISPRCasFinder	1657091-1657127	37	NZ_CP033072	Streptomyces sp. Z022 plasmid unnamed1	57604-57640	11	0.703
NC_009921_2	2.49\|1657741\|33\|NC_009921\|CRT	1657741-1657773	33	NZ_CP024924	Sphingomonas sp. Cra20 plasmid unnamed, complete sequence	78377-78409	11	0.667
NC_009921_3	3.17\|1675538\|35\|NC_009921\|CRISPRCasFinder,CRT	1675538-1675572	35	NZ_CP019604	Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence	302484-302518	11	0.686
NC_009921_3	3.17\|1675538\|35\|NC_009921\|CRISPRCasFinder,CRT	1675538-1675572	35	NZ_CP015441	Erythrobacter atlanticus strain s21-N3 plasmid unnamed, complete sequence	148008-148042	11	0.686
NC_009921_3	3.27\|1676197\|36\|NC_009921\|CRISPRCasFinder,CRT,PILER-CR	1676197-1676232	36	NC_013852	Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence	36414-36449	11	0.694
NC_009921_4	4.33\|1688664\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1688664-1688697	34	MN694333	Marine virus AFVG_250M426, complete genome	34145-34178	11	0.676
NC_009921_2	2.55\|1657740\|34\|NC_009921\|CRISPRCasFinder,PILER-CR	1657740-1657773	34	NZ_CP024924	Sphingomonas sp. Cra20 plasmid unnamed, complete sequence	78376-78409	12	0.647
NC_009921_4	4.38\|1688990\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1688990-1689023	34	NC_023597	Mycobacterium phage 20ES, complete genome	28504-28537	12	0.647
NC_009921_4	4.38\|1688990\|34\|NC_009921\|PILER-CR,CRISPRCasFinder,CRT	1688990-1689023	34	JX899358	Mycobacterium phage First, complete genome	28380-28413	12	0.647
NC_009921_2	2.18\|1656708\|36\|NC_009921\|PILER-CR	1656708-1656743	36	NZ_CP022999	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence	1550897-1550932	13	0.639
NC_009921_2	2.34\|1656695\|36\|NC_009921\|CRT,CRISPRCasFinder	1656695-1656730	36	NZ_CP022999	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence	1550897-1550932	13	0.639

1. spacer 2.23|1657039|35|NC_009921|PILER-CR matches to NZ_CP016354 (Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence) position: , mismatch: 6, identity: 0.829

gcgggcctg--gtgcgcaccgacacgtggatcccgaa	CRISPR spacer
--cggcccgaagtgcgcaccgacccgtggagcccgaa	Protospacer
   ****.*  ************ ****** ******

2. spacer 2.39|1657026|35|NC_009921|CRT,CRISPRCasFinder matches to NZ_CP016354 (Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence) position: , mismatch: 6, identity: 0.829

gcgggcctg--gtgcgcaccgacacgtggatcccgaa	CRISPR spacer
--cggcccgaagtgcgcaccgacccgtggagcccgaa	Protospacer
   ****.*  ************ ****** ******

3. spacer 1.4|607491|31|NC_009921|CRISPRCasFinder matches to MN908693 (Gordonia phage AnClar, complete genome) position: , mismatch: 7, identity: 0.774

ccagccggctggcagtgaggtccgcccgacc	CRISPR spacer
ggacgcagctgtcagtgaggtgcgcccgacc	Protospacer
  *  *.**** ********* *********

4. spacer 1.4|607491|31|NC_009921|CRISPRCasFinder matches to MK801725 (Gordonia phage Yago84, complete genome) position: , mismatch: 7, identity: 0.774

ccagccggctggcagtgaggtccgcccgacc	CRISPR spacer
ggacgcagctgtcagtgaggtgcgcccgacc	Protospacer
  *  *.**** ********* *********

5. spacer 2.18|1656708|36|NC_009921|PILER-CR matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 7, identity: 0.806

ctcgccgccgccgccggccggcggcgccctgggcca-	CRISPR spacer
gccggcgccgccgccggccggcgccgccc-gctccac	Protospacer
 .** ****************** ***** *  ***

6. spacer 2.34|1656695|36|NC_009921|CRT,CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 7, identity: 0.806

ctcgccgccgccgccggccggcggcgccctgggcca-	CRISPR spacer
gccggcgccgccgccggccggcgccgccc-gctccac	Protospacer
 .** ****************** ***** *  ***

7. spacer 2.55|1657740|34|NC_009921|CRISPRCasFinder,PILER-CR matches to MN304815 (Burkholderiales phage 68_11, complete genome) position: , mismatch: 7, identity: 0.794

-cgccgactgtcgcgcggctcctggccgagcgcct	CRISPR spacer
acggc-actgtcgcgcgcctcgtggccgagctgcg	Protospacer
 ** * *********** *** *********  *

8. spacer 3.9|1675010|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to MK878898 (Gordonia phage Zameen, complete genome) position: , mismatch: 7, identity: 0.806

agcgcgtcaccgatcagcgcgaggccggacagtgac-	CRISPR spacer
agcgcgtcatcgagcagcgcgaggcccg-catccacc	Protospacer
*********.*** ************ * ** . **

9. spacer 3.9|1675010|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to MK919483 (Gordonia phage Suscepit, complete genome) position: , mismatch: 7, identity: 0.806

agcgcgtcaccgatcagcgcgaggccggacagtgac-	CRISPR spacer
agcgcgtcatcgagcagcgcgaggcccg-catccacc	Protospacer
*********.*** ************ * ** . **

10. spacer 3.9|1675010|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 7, identity: 0.806

agcgcgtcaccgatcagcgcgaggccggacagtgac-	CRISPR spacer
agcgcgtcatcgagcagcgcgaggcccg-catccacc	Protospacer
*********.*** ************ * ** . **

11. spacer 3.9|1675010|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to MK820642 (Gordonia phage Polly, complete genome) position: , mismatch: 7, identity: 0.806

agcgcgtcaccgatcagcgcgaggccggacagtgac-	CRISPR spacer
agcgcgtcatcgagcagcgcgaggcccg-catccacc	Protospacer
*********.*** ************ * ** . **

12. spacer 3.9|1675010|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 7, identity: 0.806

agcgcgtcaccgatcagcgcgaggccggacagtgac-	CRISPR spacer
agcgcgtcatcgagcagcgcgaggcccg-catccacc	Protospacer
*********.*** ************ * ** . **

13. spacer 3.9|1675010|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to MK814755 (Gordonia phage Antonio, complete genome) position: , mismatch: 7, identity: 0.806

agcgcgtcaccgatcagcgcgaggccggacagtgac-	CRISPR spacer
agcgcgtcatcgagcagcgcgaggcccg-catccacc	Protospacer
*********.*** ************ * ** . **

14. spacer 3.9|1675010|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to MK875796 (Gordonia phage Tayonia, complete genome) position: , mismatch: 7, identity: 0.806

agcgcgtcaccgatcagcgcgaggccggacagtgac-	CRISPR spacer
agcgcgtcatcgagcagcgcgaggcccg-catccacc	Protospacer
*********.*** ************ * ** . **

15. spacer 3.9|1675010|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 7, identity: 0.806

agcgcgtcaccgatcagcgcgaggccggacagtgac-	CRISPR spacer
agcgcgtcatcgagcagcgcgaggcccg-catccacc	Protospacer
*********.*** ************ * ** . **

16. spacer 3.9|1675010|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to KU963257 (Gordonia phage Kita, complete genome) position: , mismatch: 7, identity: 0.806

agcgcgtcaccgatcagcgcgaggccggacagtgac-	CRISPR spacer
agcgcgtcatcgagcagcgcgaggcccg-catccacc	Protospacer
*********.*** ************ * ** . **

17. spacer 3.9|1675010|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 7, identity: 0.806

agcgcgtcaccgatcagcgcgaggccggacagtgac-	CRISPR spacer
agcgcgtcatcgagcagcgcgaggcccg-catccacc	Protospacer
*********.*** ************ * ** . **

18. spacer 3.9|1675010|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 7, identity: 0.806

agcgcgtcaccgatcagcgcgaggccggacagtgac-	CRISPR spacer
agcgcgtcatcgagcagcgcgaggcccg-catccacc	Protospacer
*********.*** ************ * ** . **

19. spacer 4.38|1688990|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 7, identity: 0.794

caggtggtcatccccgcgcgggcct--cctgctggg	CRISPR spacer
caggtggtcatcctcgggcgggcccgggctgccg--	Protospacer
*************.** *******.   ****.*

20. spacer 4.38|1688990|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 7, identity: 0.794

caggtggtcatccccgcgcgggcct--cctgctggg	CRISPR spacer
caggtggtcatcctcgggcgggcccgggctgccg--	Protospacer
*************.** *******.   ****.*

21. spacer 4.38|1688990|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 7, identity: 0.794

caggtggtcatccccgcgcgggcct--cctgctggg	CRISPR spacer
caggtggtcatcctcgggcgggcccgggctgccg--	Protospacer
*************.** *******.   ****.*

22. spacer 1.4|607491|31|NC_009921|CRISPRCasFinder matches to NZ_CP035513 (Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence) position: , mismatch: 8, identity: 0.742

ccagccggctggcagtgaggtccgcccgacc	CRISPR spacer
gcggcaggctggcggtgaggtccgccatgac	Protospacer
 *.** *******.************  . *

23. spacer 2.6|1655921|37|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035418 (Leisingera sp. NJS204 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.784

taggccggcccgacgtcgaccacgtcctggacgccat	CRISPR spacer
taggccggcgcgacctcgaccacgtccatgccgacca	Protospacer
********* **** ************  * ** *

24. spacer 2.6|1655921|37|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038237 (Leisingera sp. NJS201 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.784

taggccggcccgacgtcgaccacgtcctggacgccat	CRISPR spacer
taggccggcgcgacctcgaccacgtccatgccggcca	Protospacer
********* **** ************  * ** *

25. spacer 2.9|1656117|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 8, identity: 0.765

gcggccacccgggcgtcctccaccagccgacgcc	CRISPR spacer
ccgccggcctgggcgtcctccaccagccgccggg	Protospacer
 ** * .**.******************* **

26. spacer 2.9|1656117|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 8, identity: 0.765

gcggccacccgggcgtcctccaccagccgacgcc	CRISPR spacer
ccgccggcctgggcgtcctccaccagccggcggg	Protospacer
 ** * .**.*******************.**

27. spacer 2.16|1656577|35|NC_009921|PILER-CR matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 8, identity: 0.771

ctggtccagggcgagctcggcgagacgccggcgac	CRISPR spacer
gcgatcgcgggcgagctcggcgagccgccggggat	Protospacer
 .*.**  **************** ****** **.

28. spacer 2.18|1656708|36|NC_009921|PILER-CR matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 8, identity: 0.778

ctcgccgccgccgccggccggcggcgccctgggcca	CRISPR spacer
atcgccgacgccgccggccgccggcgcccccggatc	Protospacer
 ****** ************ ********. ** .

29. spacer 2.18|1656708|36|NC_009921|PILER-CR matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 8, identity: 0.778

ctcgccgccgccgccggccggcggcgccctgggcca	CRISPR spacer
atcgccgacgccgccggccgccggcgcccccggatc	Protospacer
 ****** ************ ********. ** .

30. spacer 2.22|1656972|37|NC_009921|PILER-CR matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 8, identity: 0.784

-ggcagatccacttccccgacggcaccccgcttctggg	CRISPR spacer
tggtacg-gtacttctccgacggcaccccgctgctggg	Protospacer
 **.* .  .*****.**************** *****

31. spacer 2.22|1656972|37|NC_009921|PILER-CR matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 8, identity: 0.784

ggcagat-ccacttccccgacggcaccccgcttctggg	CRISPR spacer
-gcgtacggtacttctccgacggcaccccgctgctggg	Protospacer
 **. *.  .*****.**************** *****

32. spacer 2.22|1656972|37|NC_009921|PILER-CR matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 8, identity: 0.784

ggcagat-ccacttccccgacggcaccccgcttctggg	CRISPR spacer
-gcgtacggtacttctccgacggcaccccgctgctggg	Protospacer
 **. *.  .*****.**************** *****

33. spacer 2.22|1656972|37|NC_009921|PILER-CR matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 8, identity: 0.784

ggcagat-ccacttccccgacggcaccccgcttctggg	CRISPR spacer
-gcgtacggtacttctccgacggcaccccgctgctggg	Protospacer
 **. *.  .*****.**************** *****

34. spacer 2.28|1657376|34|NC_009921|PILER-CR matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ccgaggcggcgatgggcgggacctggtcaccgct	CRISPR spacer
ccgaggcggcgacgggcaggacctccccaaggtt	Protospacer
************.****.******  .**  *.*

35. spacer 2.32|1656564|35|NC_009921|CRT,CRISPRCasFinder matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 8, identity: 0.771

ctggtccagggcgagctcggcgagacgccggcgac	CRISPR spacer
gcgatcgcgggcgagctcggcgagccgccggggat	Protospacer
 .*.**  **************** ****** **.

36. spacer 2.34|1656695|36|NC_009921|CRT,CRISPRCasFinder matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 8, identity: 0.778

ctcgccgccgccgccggccggcggcgccctgggcca	CRISPR spacer
atcgccgacgccgccggccgccggcgcccccggatc	Protospacer
 ****** ************ ********. ** .

37. spacer 2.34|1656695|36|NC_009921|CRT,CRISPRCasFinder matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 8, identity: 0.778

ctcgccgccgccgccggccggcggcgccctgggcca	CRISPR spacer
atcgccgacgccgccggccgccggcgcccccggatc	Protospacer
 ****** ************ ********. ** .

38. spacer 2.38|1656959|37|NC_009921|CRT,CRISPRCasFinder matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 8, identity: 0.784

-ggcagatccacttccccgacggcaccccgcttctggg	CRISPR spacer
tggtacg-gtacttctccgacggcaccccgctgctggg	Protospacer
 **.* .  .*****.**************** *****

39. spacer 2.38|1656959|37|NC_009921|CRT,CRISPRCasFinder matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 8, identity: 0.784

ggcagat-ccacttccccgacggcaccccgcttctggg	CRISPR spacer
-gcgtacggtacttctccgacggcaccccgctgctggg	Protospacer
 **. *.  .*****.**************** *****

40. spacer 2.38|1656959|37|NC_009921|CRT,CRISPRCasFinder matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 8, identity: 0.784

ggcagat-ccacttccccgacggcaccccgcttctggg	CRISPR spacer
-gcgtacggtacttctccgacggcaccccgctgctggg	Protospacer
 **. *.  .*****.**************** *****

41. spacer 2.38|1656959|37|NC_009921|CRT,CRISPRCasFinder matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 8, identity: 0.784

ggcagat-ccacttccccgacggcaccccgcttctggg	CRISPR spacer
-gcgtacggtacttctccgacggcaccccgctgctggg	Protospacer
 **. *.  .*****.**************** *****

42. spacer 2.49|1657741|33|NC_009921|CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 8, identity: 0.758

gccgactgtcgcgcggctcctggccgagcgcct	CRISPR spacer
gaagatgagcgcgcggatgctggccgagcgcct	Protospacer
*  **. . ******* * **************

43. spacer 2.49|1657741|33|NC_009921|CRT matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 8, identity: 0.758

gccgactgtcgcgcggctcctggccgagcgcct	CRISPR spacer
gaagatgagcgcgcggatgctggccgagcgcct	Protospacer
*  **. . ******* * **************

44. spacer 2.54|1657676|34|NC_009921|CRISPRCasFinder,PILER-CR matches to MN586020 (Microbacterium phage Megan, complete genome) position: , mismatch: 8, identity: 0.765

--caggcgcagcgaccgacctgcacgacggggatgg	CRISPR spacer
gccggtccc--tgaccgaagtgcacgacggggatgg	Protospacer
  *.* * *  .******  ****************

45. spacer 3.2|1674550|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039694 (Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence) position: , mismatch: 8, identity: 0.765

gcgaagacgagcgccgggccctcaagcgccaggt	CRISPR spacer
gcgaagacgcgcgccgcgccctcaatggctccgg	Protospacer
********* ****** ********  **.  *

46. spacer 3.6|1674814|33|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000063 (Agrobacterium fabrum strain CFBP6549 plasmid pTi_CFBP6549, complete sequence) position: , mismatch: 8, identity: 0.758

tctacctcgcctgccccccggaagcccctggac	CRISPR spacer
ggtggatcgcctgccccccggcagcccctgaag	Protospacer
  *.  *************** ********.*

47. spacer 3.15|1675410|34|NC_009921|CRISPRCasFinder,CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 8, identity: 0.765

ctgagcgcgt------cgacatcggcgggtcgaccgccaa	CRISPR spacer
------gcgtcatctccgacatgggcgggccgaccgccaa	Protospacer
      ****      ****** ******.**********

48. spacer 3.15|1675410|34|NC_009921|CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 8, identity: 0.765

ctgagc-gcgtcgacatcggcgggtcgaccgccaa	CRISPR spacer
-agatcggcgtcgacaccggcgggtcgaacgtgca	Protospacer
  ** * *********.*********** **.  *

49. spacer 3.15|1675410|34|NC_009921|CRISPRCasFinder,CRT matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.765

ctgagcgcgt------cgacatcggcgggtcgaccgccaa	CRISPR spacer
------gcgtcatctccgacatgggcgggccgaccgccaa	Protospacer
      ****      ****** ******.**********

50. spacer 3.15|1675410|34|NC_009921|CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 8, identity: 0.765

ctgagcgcgt------cgacatcggcgggtcgaccgccaa	CRISPR spacer
------gcgtcatctccgacatgggcgggccgaccgccaa	Protospacer
      ****      ****** ******.**********

51. spacer 3.15|1675410|34|NC_009921|CRISPRCasFinder,CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.765

ctgagcgcgt------cgacatcggcgggtcgaccgccaa	CRISPR spacer
------gcgtcatctccgacatgggcgggccgaccgccaa	Protospacer
      ****      ****** ******.**********

52. spacer 3.15|1675410|34|NC_009921|CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

ctgagcgcgt------cgacatcggcgggtcgaccgccaa	CRISPR spacer
------gcgtcatctccgacatgggcgggccgaccgccaa	Protospacer
      ****      ****** ******.**********

53. spacer 3.16|1675474|34|NC_009921|CRISPRCasFinder,CRT matches to KY979132 (Acidovorax phage ACP17, complete genome) position: , mismatch: 8, identity: 0.765

acgcgggggaggacttcgacctcgacccgaactt	CRISPR spacer
aggatcgtgaggacttcgacctggacacgaacgt	Protospacer
* *   * ************** *** ***** *

54. spacer 3.21|1675804|35|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to JN106172 (Uncultured bacterium plasmid pAKD29, complete sequence) position: , mismatch: 8, identity: 0.771

accggcacccggaaccgctcctgggcggcctggcg	CRISPR spacer
aaggtctccaggaacggctcctgggcggcctgggc	Protospacer
*  * * ** ***** *****************

55. spacer 3.22|1675869|35|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to JN106172 (Uncultured bacterium plasmid pAKD29, complete sequence) position: , mismatch: 8, identity: 0.771

accggcacccggaaccgctcctgggcggcctggcg	CRISPR spacer
aaggtctccaggaacggctcctgggcggcctgggc	Protospacer
*  * * ** ***** *****************

56. spacer 3.29|1675410|33|NC_009921|PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 8, identity: 0.758

ctgagc-gcgtcgacatcggcgggtcgaccgcca	CRISPR spacer
-agatcggcgtcgacaccggcgggtcgaacgtgc	Protospacer
  ** * *********.*********** **.

57. spacer 3.30|1675474|33|NC_009921|PILER-CR matches to KY979132 (Acidovorax phage ACP17, complete genome) position: , mismatch: 8, identity: 0.758

acgcgggggaggacttcgacctcgacccgaact	CRISPR spacer
aggatcgtgaggacttcgacctggacacgaacg	Protospacer
* *   * ************** *** *****

58. spacer 4.18|1687678|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cggatgtcgacgacgacctgccagcggccggcgt	CRISPR spacer
gtgtcggcgacgaggacctgccagccgccggcgg	Protospacer
  * .* ****** *********** *******

59. spacer 4.18|1687678|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018921 (Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence) position: , mismatch: 8, identity: 0.765

cggatgtcgacgacgacctgccagcggccggcgt	CRISPR spacer
cgtgtgtcgacgacgacccgcccgcggcgcgggc	Protospacer
** .**************.*** *****  * *.

60. spacer 4.20|1687809|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030864 (Streptomyces globosus strain LZH-48 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cggatgtcgacgacgacctgccagcggccggcgt	CRISPR spacer
gtgtcggcgacgaggacctgccagccgccggcgg	Protospacer
  * .* ****** *********** *******

61. spacer 4.20|1687809|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018921 (Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence) position: , mismatch: 8, identity: 0.765

cggatgtcgacgacgacctgccagcggccggcgt	CRISPR spacer
cgtgtgtcgacgacgacccgcccgcggcgcgggc	Protospacer
** .**************.*** *****  * *.

62. spacer 4.36|1688860|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029986 (Sphingomonas sp. FARSPH plasmid p01, complete sequence) position: , mismatch: 8, identity: 0.765

atggccctggtgtactgctccgcccgcttggcgg	CRISPR spacer
ttgcggccggtgtaccgccccgcccgcttggcga	Protospacer
 **   *.*******.**.**************.

63. spacer 4.38|1688990|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

caggtggtc-atccccgcgcgggcctcctgctggg	CRISPR spacer
-accccgtcgatccccgcgccggccgcctgctggc	Protospacer
 *  . *** ********** **** ********

64. spacer 7.2|7953355|32|NC_009921|CRISPRCasFinder matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 8, identity: 0.75

---tggtccggggggcccgacggcatgggcgtggg	CRISPR spacer
gcttcgctc---gggcccgacgccacgggcgtggg	Protospacer
   * *..*   ********** **.*********

65. spacer 1.2|607371|31|NC_009921|CRISPRCasFinder matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

ttagcgatgcaccggtgagatccgctccgct	CRISPR spacer
ccagcgacgcaccggtgagatcggccttgga	Protospacer
..*****.************** **...*

66. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_KY781949 (Klebsiella pneumoniae isolate Kp41 plasmid pKp41M, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

67. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP014072 (Klebsiella quasipneumoniae strain FDAARGOS_93 plasmid unnamed1) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

68. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP050846 (Klebsiella pneumoniae strain Bckp206 plasmid pBckp206-1, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

69. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_KX783441 (Klebsiella pneumoniae strain KP4368 plasmid pKP4368, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

70. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_KT935445 (Klebsiella pneumoniae strain Kp6411 plasmid 6411TF, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

71. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_KX009507 (Escherichia coli strain 06K2206 plasmid LM6771, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

72. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NC_019368 (Enterobacter cloacae plasmid pEl1573, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

73. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP015071 (Escherichia coli strain Ecol_743 plasmid pEC743_OXA48, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

74. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_KM406488 (Salmonella enterica subsp. enterica serovar Paratyphi B strain R69 plasmid R69, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

75. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_KM406490 (Salmonella enterica subsp. enterica serovar Typhimurium strain 202 plasmid pSEM, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

76. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_KP025948 (Proteus mirabilis strain Pm-Oxa48 plasmid pOXA48-Pm, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

77. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_KM877517 (Enterobacter cloacae strain CRE623 plasmid pIMP-HB623, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

78. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_KP975075 (Citrobacter freundii strain MRSN12115 plasmid pMRVIM1012, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

79. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_KP294351 (Escherichia coli strain CZD1527 plasmid pIGT15, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

80. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_KU315015 (Serratia marcescens strain NCTC 50331 plasmid R1215, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

81. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP026156 (Klebsiella pneumoniae strain B12(AN) plasmid pB12AN_1, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

82. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP011599 (Phytobacter ursingii strain CAV1151 plasmid pCAV1151-83, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

83. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP037737 (Citrobacter freundii strain CAV1857 plasmid pKPC_CAV1857-85, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

84. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NC_004464 (Citrobacter freundii plasmid pCTX-M3, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

85. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP035217 (Klebsiella michiganensis strain M82255 plasmid pKOCBH-C, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

86. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP042501 (Enterobacter sp. E76 plasmid pE76_002, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

87. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP029447 (Serratia marcescens strain CAV1761 plasmid pCAV1761-73, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

88. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP042509 (Leclercia adecarboxylata strain E1 plasmid pE1_004, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

89. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP020530 (Enterobacter cloacae strain 174 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

90. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC556214 (Escherichia coli CEX24 plasmid pCEX24 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

91. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC556215 (Escherichia coli CEX25 plasmid pCEX25 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

92. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC556216 (Escherichia coli CEX14 plasmid pCEX14 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

93. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC556217 (Escherichia coli CEX3 plasmid pCEX3 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

94. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC556218 (Enterobacter cloacae CEX5 plasmid pCEX5 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

95. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC556219 (Enterobacter cloacae CEX6 plasmid pCEX6 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

96. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC556220 (Enterobacter cloacae CEX4 plasmid pCEX4 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

97. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC556221 (Klebsiella pneumoniae CEX18 plasmid pCEX18 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

98. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC556222 (Klebsiella pneumoniae CEX23 plasmid pCEX23 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

99. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP031566 (Enterobacter hormaechei strain 2013_1a plasmid pIncLM-1301491, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

100. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NC_024997 (Klebsiella oxytoca plasmid pACM1, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

101. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_LT994838 (Klebsiella variicola isolate CNR130 plasmid CNR130, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

102. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NC_025134 (Klebsiella pneumoniae plasmid pFOX-7a, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

103. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP042514 (Serratia marcescens strain E28 plasmid pE28_002, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

104. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_LT985387 (Escherichia coli strain 694 genome assembly, plasmid: RCS55_pI) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

105. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP029138 (Klebsiella pneumoniae strain AR376 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

106. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP019841 (Enterobacter roggenkampii strain R11 plasmid pASM2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

107. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP045511 (Salmonella enterica subsp. enterica serovar Anatum strain M-5360 plasmid p55k, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

108. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC508263 (Klebsiella pneumoniae A1-3 plasmid pA1-3 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

109. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP010365 (Enterobacter hormaechei subsp. oharae strain 34978 plasmid p34978-70.092kb, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

110. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP029599 (Klebsiella quasipneumoniae subsp. similipneumoniae strain ATCC 700603 plasmid pDA33145-77, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

111. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NC_019063 (Escherichia coli plasmid pNDM-HK, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

112. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to MG516907 (Klebsiella aerogenes plasmid pEa1631, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

113. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP042532 (Klebsiella aerogenes strain C9 plasmid pC9_002, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

114. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP022826 (Klebsiella quasivariicola strain KPN1705 plasmid pKPN1705-3, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

115. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_AP019667 (Klebsiella pneumoniae strain TA6363 plasmid pTMTA63632, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

116. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_LT994833 (Klebsiella pneumoniae isolate CNR341 plasmid CNR341, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

117. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP031235 (Escherichia coli strain Es_ST410_NW1_NDM_09_2017 plasmid pEsST410_NW_NDM, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

118. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to KP294350 (Uncultured bacterium plasmid pARM26, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

119. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP011614 (Klebsiella oxytoca strain CAV1335 plasmid pCAV1335-92, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

120. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP017932 (Klebsiella oxytoca strain CAV1015 plasmid pCAV1015-76, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

121. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP017936 (Klebsiella pneumoniae strain CAV1016 plasmid pCAV1016-76, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

122. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP018669 (Klebsiella pneumoniae strain CAV1042 plasmid pKPC_CAV1042-89, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

123. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP018974 (Escherichia coli strain Ecol_545 plasmid pEC545_KPC, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

124. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP018452 (Klebsiella pneumoniae strain Kp_Goe_71070 plasmid pKp_Goe_070-2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

125. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP011640 (Serratia marcescens strain CAV1492 plasmid pCAV1492-73, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

126. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC536683 (Klebsiella pneumoniae MyNCGM084 plasmid pMyNCGM084, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

127. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP048418 (Citrobacter freundii strain CitB plasmid pB_CitB, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

128. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP045017 (Klebsiella pneumoniae subsp. pneumoniae strain BK13048 plasmid pBK13048-2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

129. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP053283 (Escherichia coli strain SCU-308 plasmid pSCU-308-2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

130. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP011632 (Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-84, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

131. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP042574 (Enterobacter hormaechei strain E5 plasmid pE5_003, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

132. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP042542 (Enterobacter hormaechei strain C4 plasmid pC4_002, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

133. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP027148 (Klebsiella pneumoniae strain AR_0363 plasmid unnamed5) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

134. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP014698 (Klebsiella quasipneumoniae strain ATCC 700603 isolate K6 plasmid pKQPS2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

135. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP011593 (Klebsiella oxytoca strain CAV1099 plasmid pCAV1099-69, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

136. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP011656 (Citrobacter freundii strain CAV1741 plasmid pKPC_CAV1741, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

137. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP014298 (Klebsiella pneumoniae strain KP38731 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

138. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP042580 (Enterobacter kobei strain C16 plasmid pC16_002, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

139. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to KU159086 (Klebsiella pneumoniae plasmid pOXAAPSS2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

140. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP011609 (Citrobacter freundii strain CAV1321 plasmid pCAV1321-71, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

141. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to MN187903 (Citrobacter freundii strain Cf164 plasmid pCf164_CTX-M-8, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

142. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP032170 (Klebsiella pneumoniae strain AR_0076 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

143. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP032193 (Salmonella enterica subsp. enterica serovar Senftenberg strain AR_0127 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

144. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP026497 (Klebsiella pneumoniae strain 616 plasmid pKp616_2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

145. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP044337 (Enterobacter hormaechei strain AKB48 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

146. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP031216 (Escherichia coli strain Es_ST80_L1_NDM_10_2017 plasmid pEsST80_L1_NDM, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

147. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP038457 (Escherichia coli strain EC-129 plasmid pEC129_4, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

148. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NC_011641 (Klebsiella pneumoniae plasmid pCTXM360, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

149. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP042526 (Citrobacter freundii strain E11 plasmid pE11_002, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

150. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to CP020502 (Serratia marcescens strain BWH-23 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

151. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NC_019346 (Enterobacter cloacae plasmid pNE1280, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

152. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP031322 (Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018 plasmid pEsST2350_SE_NDM, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

153. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP029720 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

154. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP027699 (Klebsiella pneumoniae strain KP30835 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

155. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP042490 (Enterobacter hormaechei strain C15 plasmid pC15_002) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

156. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_LT985264 (Escherichia coli strain 717 plasmid RCS51TR717_p, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

157. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_LT985279 (Escherichia coli strain 676 plasmid RCS60_p, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

158. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_LT985241 (Escherichia coli strain 721 plasmid RCS40_p, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

159. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC505604 (Klebsiella pneumoniae A1-1 plasmid pKp1-1 genomic DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

160. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to LC508722 (Klebsiella pneumoniae A2-1 plasmid pA2-4 DNA, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

161. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NC_019889 (Klebsiella pneumoniae strain 601 plasmid pNDM-OM, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

162. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to MT193824 (Escherichia coli strain 19-AB01443 plasmid pOX-48-EC1443, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

163. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_MF156266 (Escherichia coli strain 24-S11 plasmid pCESC2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

164. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP021742 (Klebsiella pneumoniae strain AR_0126 plasmid tig00000002jNODE_23, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

165. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP018449 (Klebsiella pneumoniae strain Kp_Goe_33208 plasmid pKp_Goe_208-2, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

166. spacer 1.3|607431|31|NC_009921|CRISPRCasFinder matches to NZ_CP042568 (Enterobacter hormaechei strain C44 plasmid pC44_002, complete sequence) position: , mismatch: 9, identity: 0.71

ccaaccaggtatagctgaggttggcctcgtt	CRISPR spacer
cacgttaggtgtagctgaggttggactcgcc	Protospacer
*  ...****.************* ****..

167. spacer 1.4|607491|31|NC_009921|CRISPRCasFinder matches to GQ379227 (Streptomyces phage phiSASD1, complete genome) position: , mismatch: 9, identity: 0.71

ccagccggctggcagtgaggtccgcccgacc	CRISPR spacer
ccagccggccggcagtgatgtccatgccggg	Protospacer
*********.******** ****.. * .

168. spacer 2.4|1655790|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134460 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence) position: , mismatch: 9, identity: 0.735

ccagatcgcggcgacctgacggagggtcgtctcc	CRISPR spacer
gacgatcgcggcgacctcacgcagggtcaggtcg	Protospacer
   ************** *** ******.  **

169. spacer 2.9|1656117|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 9, identity: 0.735

gcggccacccgggcgtcctccaccagccgacgcc	CRISPR spacer
accggcagccgggcgtccaccaccagccggtcct	Protospacer
.* * ** ********** **********.. *.

170. spacer 2.13|1656379|35|NC_009921|PILER-CR matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 9, identity: 0.743

cccgcgaacgtcttcatggccgtcatgcagggcct	CRISPR spacer
gcggcaggcgtcttcacgggcgtcatgcagggcag	Protospacer
 * **...********.** *************

171. spacer 2.18|1656708|36|NC_009921|PILER-CR matches to NC_009717 (Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence) position: , mismatch: 9, identity: 0.75

ctcgccgccgccgccggccggcggcgccctgggcca	CRISPR spacer
tccgcctccgccgccggccggcggcgccgcacggct	Protospacer
..**** ********************* .. * *

172. spacer 2.19|1656774|35|NC_009921|PILER-CR matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 9, identity: 0.743

gtcgggcatggacgtggccgagccggacgggttca	CRISPR spacer
ggcgccggtggccgtggccgagccggccgggttgg	Protospacer
* **   .*** ************** ****** .

173. spacer 2.29|1656366|35|NC_009921|CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 9, identity: 0.743

cccgcgaacgtcttcatggccgtcatgcagggcct	CRISPR spacer
gcggcaggcgtcttcacgggcgtcatgcagggcag	Protospacer
 * **...********.** *************

174. spacer 2.34|1656695|36|NC_009921|CRT,CRISPRCasFinder matches to NC_009717 (Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence) position: , mismatch: 9, identity: 0.75

ctcgccgccgccgccggccggcggcgccctgggcca	CRISPR spacer
tccgcctccgccgccggccggcggcgccgcacggct	Protospacer
..**** ********************* .. * *

175. spacer 2.35|1656761|35|NC_009921|CRT,CRISPRCasFinder matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 9, identity: 0.743

gtcgggcatggacgtggccgagccggacgggttca	CRISPR spacer
ggcgccggtggccgtggccgagccggccgggttgg	Protospacer
* **   .*** ************** ****** .

176. spacer 2.48|1657677|33|NC_009921|CRT matches to MN586020 (Microbacterium phage Megan, complete genome) position: , mismatch: 9, identity: 0.727

aggcgcagcgaccgacctgcacgacggggatgg	CRISPR spacer
ccggtccctgaccgaagtgcacgacggggatgg	Protospacer
  *  *  .******  ****************

177. spacer 2.49|1657741|33|NC_009921|CRT matches to MN304815 (Burkholderiales phage 68_11, complete genome) position: , mismatch: 9, identity: 0.727

gccgactgtcgcgcggctcctggccgagcgcct	CRISPR spacer
cggcactgtcgcgcgcctcgtggccgagctgcg	Protospacer
    *********** *** *********  *

178. spacer 2.55|1657740|34|NC_009921|CRISPRCasFinder,PILER-CR matches to NZ_CP016458 (Blastomonas sp. RAC04 plasmid pBSY18_2, complete sequence) position: , mismatch: 9, identity: 0.735

-cgccgactgtcgcgcggctcctggccgagcgcct	CRISPR spacer
acaatg-cagtcccgcggctcctggctgagcgcag	Protospacer
 *. .* * *** *************.******

179. spacer 2.55|1657740|34|NC_009921|CRISPRCasFinder,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 9, identity: 0.735

cgccgactgtcgcgcggctcctggccgagcgcct	CRISPR spacer
agaagatgagcgcgcggatgctggccgagcgcct	Protospacer
 *  **. . ******* * **************

180. spacer 2.55|1657740|34|NC_009921|CRISPRCasFinder,PILER-CR matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 9, identity: 0.735

cgccgactgtcgcgcggctcctggccgagcgcct	CRISPR spacer
agaagatgagcgcgcggatgctggccgagcgcct	Protospacer
 *  **. . ******* * **************

181. spacer 3.2|1674550|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to KM400683 (Mycobacterium phage Ariel, complete genome) position: , mismatch: 9, identity: 0.735

gcgaagacgagcgccgggccctcaagcgccaggt	CRISPR spacer
ggatgcgggagcgccgggccctcatgcgccacgt	Protospacer
* . . . **************** ****** **

182. spacer 3.2|1674550|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to MF919534 (Mycobacterium phage Superphikiman, complete genome) position: , mismatch: 9, identity: 0.735

gcgaagacgagcgccgggccctcaagcgccaggt	CRISPR spacer
ggatgcgggagcgccgggccctcatgcgccacgt	Protospacer
* . . . **************** ****** **

183. spacer 3.2|1674550|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NC_023690 (Mycobacterium phage Courthouse, complete genome) position: , mismatch: 9, identity: 0.735

gcgaagacgagcgccgggccctcaagcgccaggt	CRISPR spacer
ggatgcgggagcgccgggccctcatgcgccacgt	Protospacer
* . . . **************** ****** **

184. spacer 3.2|1674550|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 9, identity: 0.735

gcgaagacgagcgccgggccctcaagcgccaggt	CRISPR spacer
gcccaaccgagcgccgcgcccgcaagcgccatcg	Protospacer
**  *. ********* **** *********

185. spacer 3.4|1674681|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016354 (Prauserella marina strain DSM 45268 plasmid pPmarDSM45268, complete sequence) position: , mismatch: 9, identity: 0.75

ccagtgggcgatccccggcgggatggtggacccggg	CRISPR spacer
ggtatgggcaatccccggcgggatggtcgatgccgg	Protospacer
   .*****.***************** **. * **

186. spacer 3.15|1675410|34|NC_009921|CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.735

ctgagcgcgt------cgacatcggcgggtcgaccgccaa	CRISPR spacer
------gggtcatttccgacatgggcgggccgaccgccaa	Protospacer
      * **      ****** ******.**********

187. spacer 3.15|1675410|34|NC_009921|CRISPRCasFinder,CRT matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 9, identity: 0.735

ctgagcgcgtcgacatcggcgggtcgaccgccaa-	CRISPR spacer
gccagggcgtcgacatcggcgggttga-cgcaggc	Protospacer
 . ** ******************.** *** ..

188. spacer 3.19|1675674|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LN831789 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE2) position: , mismatch: 9, identity: 0.75

cggtgtcgtcggggatggcgacgtcgacaggctgtc	CRISPR spacer
cggtgtcgtcgacgatggcgacgtcgtggtggcgtt	Protospacer
***********. *************  . * .**.

189. spacer 3.19|1675674|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 9, identity: 0.75

cggtgtcgtcggggatggcgacgtcgacaggctgtc--	CRISPR spacer
cggtgtcgtcgaggacggcgacgtcggtga--cgtcga	Protospacer
***********.***.**********....  .***

190. spacer 3.29|1675410|33|NC_009921|PILER-CR matches to NZ_CP039919 (Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626b, complete sequence) position: , mismatch: 9, identity: 0.727

ctgagcgcgtcgacatcggcgggtcgaccgcca	CRISPR spacer
gcattcgcgtcaacatcggcgcgtcgaccgaga	Protospacer
 ..  ******.********* ********  *

191. spacer 4.13|1687343|37|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048050 (Clavibacter michiganensis subsp. capsici strain 1101 plasmid pCM2_1101, complete sequence) position: , mismatch: 9, identity: 0.757

tggtcctggtcctggtgcttgtcgccgtggccgcacg	CRISPR spacer
tggtcctggtcctggtcctcgtcgccgccgcatcgtt	Protospacer
**************** **.*******. **  *..

192. spacer 4.13|1687343|37|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006369 (Aureimonas sp. AU20 plasmid pAU20b, complete sequence) position: , mismatch: 9, identity: 0.757

tggtcctggtcctggtgcttgtcgccgtggccgcacg	CRISPR spacer
tcttcgtggtcatggtgcttgtcgccgtggtggtggg	Protospacer
*  ** ***** ******************. *.. *

193. spacer 6.1|3618776|38|NC_009921|CRISPRCasFinder matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 9, identity: 0.763

-cagggtgctaactgggcaccgcccgacgtgccgtcgtc	CRISPR spacer
atcgtgagcc-actgcgcaccgcccgacgtgccgccgtt	Protospacer
 . * * **. **** ******************.***.

194. spacer 7.2|7953355|32|NC_009921|CRISPRCasFinder matches to NZ_CP010057 (Hymenobacter sp. DG25B plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

tggtccggggggcccgacggcatgggcgtggg	CRISPR spacer
cccaccctcgggcccgacggcaccggcgtggg	Protospacer
.   **   *************. ********

195. spacer 2.9|1656117|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011276 (Planctomyces sp. SH-PL62 plasmid pPL62-3, complete sequence) position: , mismatch: 10, identity: 0.706

gcggccacccgggcgtcctccaccagccgacgcc	CRISPR spacer
acggccacccgggcggcctcgaccatctgctcgg	Protospacer
.************** **** **** *.* .

196. spacer 2.49|1657741|33|NC_009921|CRT matches to NZ_CP016458 (Blastomonas sp. RAC04 plasmid pBSY18_2, complete sequence) position: , mismatch: 10, identity: 0.697

gccgactgtcgcgcggctcctggccgagcgcct	CRISPR spacer
caatgcagtcccgcggctcctggctgagcgcag	Protospacer
    .* *** *************.******

197. spacer 3.2|1674550|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

gcgaagacgagcgccgggccctcaagcgccaggt	CRISPR spacer
acatccctgagcgccgggccgtcaagcgcccggc	Protospacer
.*.    .************ ********* **.

198. spacer 3.2|1674550|34|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019633 (Enterobacter asburiae strain 1808-013 plasmid pEAS1808-013-1, complete sequence) position: , mismatch: 10, identity: 0.706

gcgaagacgagcgccgggccctcaagcgccaggt	CRISPR spacer
gcgaagacgcgcgccgcgccctcagcgatgccgt	Protospacer
********* ****** *******.  ..   **

199. spacer 3.8|1674944|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 10, identity: 0.722

taggggtgtaggccacggcctcgccgaggtgcgcgg	CRISPR spacer
ggagcatgtaggccatggcctcgccgaggtccgact	Protospacer
 ..* .*********.************** **

200. spacer 3.8|1674944|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 10, identity: 0.722

taggggtgtaggccacggcctcgccgaggtgcgcgg	CRISPR spacer
gcacgtcctcggctacggcctcgacgaggtgcgcgg	Protospacer
  . * . * ***.********* ************

201. spacer 3.15|1675410|34|NC_009921|CRISPRCasFinder,CRT matches to NZ_CP039919 (Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626b, complete sequence) position: , mismatch: 10, identity: 0.706

ctgagcgcgtcgacatcggcgggtcgaccgccaa	CRISPR spacer
gcattcgcgtcaacatcggcgcgtcgaccgagag	Protospacer
 ..  ******.********* ********  *.

202. spacer 3.15|1675410|34|NC_009921|CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 10, identity: 0.706

ctgagcgcgtcgacatcggcgggtcgaccgccaa	CRISPR spacer
gggtcatctccgacatgggcgggccgaccgccaa	Protospacer
  *    * .****** ******.**********

203. spacer 3.19|1675674|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to AM419438 (Archaeal BJ1 virus complete genome) position: , mismatch: 10, identity: 0.722

cggtgtcgtcggggatggcgacgtcgacaggctgtc	CRISPR spacer
gcgtgtcgtcggtgatgtcgacgtcgacgccgtgcg	Protospacer
  ********** **** **********.   **.

204. spacer 3.19|1675674|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NC_008695 (Archaeal BJ1 virus, complete genome) position: , mismatch: 10, identity: 0.722

cggtgtcgtcggggatggcgacgtcgacaggctgtc	CRISPR spacer
gcgtgtcgtcggtgatgtcgacgtcgacgccgtgcg	Protospacer
  ********** **** **********.   **.

205. spacer 3.29|1675410|33|NC_009921|PILER-CR matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 10, identity: 0.697

ctgagcgcgtcgacatcggcgggtcgaccgcca	CRISPR spacer
gccagggcgtcgacatcggcgggttgacgcagg	Protospacer
 . ** ******************.***    .

206. spacer 4.13|1687343|37|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NC_015377 (Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequence) position: , mismatch: 10, identity: 0.73

tggtcctggtcctggtgcttgtcgccgtggccgcacg	CRISPR spacer
ccgtcctggtcctggtcctggtcgccgtcgtcatccc	Protospacer
. ************** ** ******** *.*.. *

207. spacer 4.15|1687478|37|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to AB863625 (Ralstonia phage RSK1 DNA, complete genome) position: , mismatch: 10, identity: 0.73

ccggcgaggtgccggcctcgcctgccagggtgacgcg	CRISPR spacer
cgagctttttgccggcctcgccagcgagggtgacgac	Protospacer
* .**    ************* ** *********

208. spacer 4.15|1687478|37|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to MN996301 (Ralstonia phage RpY1, complete genome) position: , mismatch: 10, identity: 0.73

ccggcgaggtgccggcctcgcctgccagggtgacgcg	CRISPR spacer
cgagctttttgccggcctcgccagcgagggtgacgac	Protospacer
* .**    ************* ** *********

209. spacer 4.18|1687678|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022611 (Mycolicibacterium madagascariense strain JCM 13574 plasmid pJCM13574) position: , mismatch: 10, identity: 0.706

cggatgtcgacgacgacctgccagcggccggcgt	CRISPR spacer
gcttcgtcgacgacgacctgcgagccgccgaccc	Protospacer
    .**************** *** ****.* .

210. spacer 4.18|1687678|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

cggatgtcgacgacgacctgccagcggccggcgt	CRISPR spacer
cagcggtcgacgacgaccagcccgcggccttgag	Protospacer
*.*  ************* *** ******   .

211. spacer 4.20|1687809|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022611 (Mycolicibacterium madagascariense strain JCM 13574 plasmid pJCM13574) position: , mismatch: 10, identity: 0.706

cggatgtcgacgacgacctgccagcggccggcgt	CRISPR spacer
gcttcgtcgacgacgacctgcgagccgccgaccc	Protospacer
    .**************** *** ****.* .

212. spacer 4.20|1687809|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

cggatgtcgacgacgacctgccagcggccggcgt	CRISPR spacer
cagcggtcgacgacgaccagcccgcggccttgag	Protospacer
*.*  ************* *** ******   .

213. spacer 4.33|1688664|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 10, identity: 0.706

gccggatcccaaatgtcgccgtcgccgtcgccgt	CRISPR spacer
atgtggacccaaatgtcgccgccgcggtcgctat	Protospacer
..  *. **************.*** *****..*

214. spacer 4.33|1688664|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

gccggatcccaaatgtcgccgtcgccgtcgccgt	CRISPR spacer
attggatgccagatgtcgccgtcgccggaaacga	Protospacer
...**** ***.***************  . **

215. spacer 2.6|1655921|37|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to MK838113 (Aeromonas phage LAh_7, complete genome) position: , mismatch: 11, identity: 0.703

taggccggcccgacgtcgaccacgtcctggacgccat	CRISPR spacer
ccgttgaaaccgacgtctaccgcgtcctggacgcctt	Protospacer
. * . .. ******** ***.************* *

216. spacer 2.15|1656510|37|NC_009921|PILER-CR matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.703

acggcatcgagttgccgaagttggcgtcgagcatgta	CRISPR spacer
cgtgctgcgagttgccgaagttggcgcccagcacccg	Protospacer
   **  *******************.* ****. ..

217. spacer 2.15|1656510|37|NC_009921|PILER-CR matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.703

acggcatcgagttgccgaagttggcgtcgagcatgta	CRISPR spacer
cgtgctgcgagttgccgaagttggcgcccagcacccg	Protospacer
   **  *******************.* ****. ..

218. spacer 2.24|1657104|37|NC_009921|PILER-CR matches to NZ_CP033072 (Streptomyces sp. Z022 plasmid unnamed1) position: , mismatch: 11, identity: 0.703

tcgaggacgcccgccagcacctgaacttccggtcgac	CRISPR spacer
tcgaagatgcccgccagcacctgaaccaagacacctc	Protospacer
****.**.******************.   .  *  *

219. spacer 2.31|1656497|37|NC_009921|CRT,CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.703

acggcatcgagttgccgaagttggcgtcgagcatgta	CRISPR spacer
cgtgctgcgagttgccgaagttggcgcccagcacccg	Protospacer
   **  *******************.* ****. ..

220. spacer 2.31|1656497|37|NC_009921|CRT,CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.703

acggcatcgagttgccgaagttggcgtcgagcatgta	CRISPR spacer
cgtgctgcgagttgccgaagttggcgcccagcacccg	Protospacer
   **  *******************.* ****. ..

221. spacer 2.40|1657091|37|NC_009921|CRT,CRISPRCasFinder matches to NZ_CP033072 (Streptomyces sp. Z022 plasmid unnamed1) position: , mismatch: 11, identity: 0.703

tcgaggacgcccgccagcacctgaacttccggtcgac	CRISPR spacer
tcgaagatgcccgccagcacctgaaccaagacacctc	Protospacer
****.**.******************.   .  *  *

222. spacer 2.49|1657741|33|NC_009921|CRT matches to NZ_CP024924 (Sphingomonas sp. Cra20 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.667

gccgactgtcgcgcggctcctggccgagcgcct	CRISPR spacer
aggagatgtcgcgcggctcgtcgccgagcgttc	Protospacer
.  .. ************* * ********...

223. spacer 3.17|1675538|35|NC_009921|CRISPRCasFinder,CRT matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 11, identity: 0.686

ggccccaccggcaggcgtcgctgcatcatctgcaa	CRISPR spacer
ttcttcaccggcagccgtcggtgcatcatcgatgg	Protospacer
  *..********* ***** ********* ....

224. spacer 3.17|1675538|35|NC_009921|CRISPRCasFinder,CRT matches to NZ_CP015441 (Erythrobacter atlanticus strain s21-N3 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

ggccccaccggcaggcgtcgctgcatcatctgcaa	CRISPR spacer
ttcttcaccggcagccgtcggtgcatcatcgatgg	Protospacer
  *..********* ***** ********* ....

225. spacer 3.27|1676197|36|NC_009921|CRISPRCasFinder,CRT,PILER-CR matches to NC_013852 (Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence) position: , mismatch: 11, identity: 0.694

gctgctcgccatggacaccgacgcgatgaccaactt	CRISPR spacer
caggatcgccatgaacaccgaagcgatgaccgttaa	Protospacer
   * ********.******* *********. .

226. spacer 4.33|1688664|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to MN694333 (Marine virus AFVG_250M426, complete genome) position: , mismatch: 11, identity: 0.676

gccggatcccaaatgtcgccgtcgccgtcgccgt	CRISPR spacer
gctggctcccaaatgtcgccgtcgaaactttcaa	Protospacer
**.** ******************  ... .*.

227. spacer 2.55|1657740|34|NC_009921|CRISPRCasFinder,PILER-CR matches to NZ_CP024924 (Sphingomonas sp. Cra20 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.647

cgccgactgtcgcgcggctcctggccgagcgcct	CRISPR spacer
aaggagatgtcgcgcggctcgtcgccgagcgttc	Protospacer
 .  .. ************* * ********...

228. spacer 4.38|1688990|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to NC_023597 (Mycobacterium phage 20ES, complete genome) position: , mismatch: 12, identity: 0.647

caggtggtcatccccgcgcgggcctcctgctggg	CRISPR spacer
tgttcggtcatccccgctcggccctcctgagttc	Protospacer
..  .************ *** *******

229. spacer 4.38|1688990|34|NC_009921|PILER-CR,CRISPRCasFinder,CRT matches to JX899358 (Mycobacterium phage First, complete genome) position: , mismatch: 12, identity: 0.647

caggtggtcatccccgcgcgggcctcctgctggg	CRISPR spacer
tgttcggtcatccccgctcggccctcctgagttc	Protospacer
..  .************ *** *******

230. spacer 2.18|1656708|36|NC_009921|PILER-CR matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 13, identity: 0.639

-----ctcgccgccgccgccggccggcggcgccctgggcca	CRISPR spacer
gccgccgagccgccgccgcccggcgacggcggcgag-----	Protospacer
     *  ************ * **.***** *  *

231. spacer 2.34|1656695|36|NC_009921|CRT,CRISPRCasFinder matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 13, identity: 0.639

-----ctcgccgccgccgccggccggcggcgccctgggcca	CRISPR spacer
gccgccgagccgccgccgcccggcgacggcggcgag-----	Protospacer
     *  ************ * **.***** *  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

480892 : 543945

Planktothrix_phage(50.0%)

integrase,transposase

attL 495833:495865|attR 498897:498929

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157472258.1\|480892_481963_-\|transposase	transposase	NA	NA	NA	NA
WP_012157845.1\|482036_482705_-	DUF5060 domain-containing protein	NA	NA	NA	NA
WP_012157846.1\|482763_483234_-	6,7-dimethyl-8-ribityllumazine synthase	NA	NA	NA	NA
WP_041253613.1\|483416_484421_+	TIM barrel protein	NA	NA	NA	NA
WP_157472959.1\|484447_485326_+	transketolase	NA	NA	NA	NA
WP_012157849.1\|485351_486323_+	transketolase	NA	NA	NA	NA
WP_012157850.1\|486306_487827_+	FGGY-family carbohydrate kinase	NA	NA	NA	NA
WP_157472260.1\|487884_488895_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012157857.1\|492136_492259_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012157858.1\|492278_493022_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_157472262.1\|494147_494357_+	hypothetical protein	NA	NA	NA	NA
495833:495865	attL	NA	NA	NA	NA
WP_012157862.1\|495941_496931_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	2.1e-16	24.4
WP_012157863.1\|496927_497878_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012157864.1\|497856_498771_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJ76	Virus_Rctr85	1.1e-08	28.4
WP_041255304.1\|500079_501138_-	LacI family transcriptional regulator	NA	NA	NA	NA
498897:498929	attR	NA	NA	NA	NA
WP_157472264.1\|501103_502888_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012157868.1\|502902_503844_+	ABC transporter permease	NA	NA	NA	NA
WP_012157869.1\|503840_505589_+	dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein	G9BWD6	Planktothrix_phage	3.3e-17	29.7
WP_012157870.1\|505590_506400_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-17	30.0
WP_012157871.1\|506430_508965_+	alpha-L-rhamnosidase	NA	NA	NA	NA
WP_012157872.1\|508968_510324_+	glycoside hydrolase family 43 protein	NA	NA	NA	NA
WP_012157873.1\|510320_512048_+	PKD domain-containing protein	NA	NA	NA	NA
WP_012157874.1\|512057_513767_+	DUF5060 domain-containing protein	NA	NA	NA	NA
WP_012157875.1\|513766_514804_+	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_157472266.1\|514779_517170_+	beta-glucosidase	NA	NA	NA	NA
WP_012157877.1\|517179_518205_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_012157878.1\|518333_519530_+	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_083788145.1\|520477_520738_+	DUF433 domain-containing protein	NA	NA	NA	NA
WP_012157881.1\|520734_521103_+	hypothetical protein	NA	NA	NA	NA
WP_012157882.1\|522169_523276_+\|transposase	transposase	NA	NA	NA	NA
WP_012157883.1\|523524_523671_-	hypothetical protein	NA	NA	NA	NA
WP_012157884.1\|524045_524447_-	PIN domain-containing protein	NA	NA	NA	NA
WP_041253618.1\|524431_524689_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_083788146.1\|524833_525511_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_020458104.1\|525540_526257_+	hypothetical protein	NA	NA	NA	NA
WP_041253621.1\|526609_527542_+	aldo/keto reductase	NA	NA	NA	NA
WP_020458106.1\|527673_528660_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_157472268.1\|529023_530640_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020458108.1\|530651_531593_+	ABC transporter permease	NA	NA	NA	NA
WP_157472270.1\|531562_533383_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.3e-19	32.7
WP_020458110.1\|533379_534219_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-15	29.7
WP_157472960.1\|534711_536640_+	hypothetical protein	NA	NA	NA	NA
WP_020458112.1\|536844_537933_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_157472962.1\|538301_540581_+	beta-glucosidase	NA	NA	NA	NA
WP_020458115.1\|541776_543945_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

553849 : 580875

Mollivirus(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020458126.1\|553849_554917_-\|transposase	transposase	NA	NA	NA	NA
WP_157472272.1\|554915_555482_+\|transposase	transposase	NA	NA	NA	NA
WP_157472274.1\|555370_555775_+\|transposase	transposase	NA	NA	NA	NA
WP_041253622.1\|556909_557584_-	hypothetical protein	NA	NA	NA	NA
WP_020458129.1\|557744_558773_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_020458130.1\|559193_560261_-\|transposase	transposase	NA	NA	NA	NA
WP_020458131.1\|560485_562102_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_041255323.1\|562699_563221_+	hypothetical protein	NA	NA	NA	NA
WP_020458133.1\|563375_563564_-	hypothetical protein	NA	NA	NA	NA
WP_020458134.1\|563582_564650_-\|transposase	transposase	NA	NA	NA	NA
WP_157472276.1\|564781_565081_+	hypothetical protein	NA	NA	NA	NA
WP_020458135.1\|565190_565814_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_157472966.1\|565976_566702_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_020458137.1\|566754_567525_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	3.3e-09	27.7
WP_020458138.1\|567587_568082_+	nitroreductase family deazaflavin-dependent oxidoreductase	NA	NA	NA	NA
WP_020458139.1\|568078_568966_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_020458142.1\|570420_570762_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_041253626.1\|570827_571682_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA
WP_020458145.1\|571901_572147_-\|transposase	transposase	NA	NA	NA	NA
WP_083788461.1\|572362_572665_-	hypothetical protein	NA	NA	NA	NA
WP_041255333.1\|573104_573650_-	hypothetical protein	NA	NA	NA	NA
WP_020458149.1\|574869_576030_+	DUF839 domain-containing protein	NA	NA	NA	NA
WP_041253627.1\|577531_577753_-	hypothetical protein	NA	NA	NA	NA
WP_157472278.1\|578014_578215_-	hypothetical protein	NA	NA	NA	NA
WP_020458152.1\|578589_579471_-	hypothetical protein	NA	NA	NA	NA
WP_157472968.1\|579528_580137_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_157472280.1\|580590_580875_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

3235765 : 3333365

Streptomyces_phage(25.0%)

integrase,transposase

attL 3291428:3291444|attR 3344481:3344497

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041254077.1\|3235765_3236845_+\|integrase	site-specific integrase	A0A1P8DJP1	Virus_Rctr41k	7.4e-07	30.3
WP_020460133.1\|3236841_3237165_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020460134.1\|3237171_3238836_+\|integrase	integrase	NA	NA	NA	NA
WP_020460323.1\|3238751_3239564_-	hypothetical protein	NA	NA	NA	NA
WP_020460324.1\|3239837_3241226_+\|transposase	IS701-like element ISFsp9 family transposase	NA	NA	NA	NA
WP_020460325.1\|3241627_3242500_+	hypothetical protein	NA	NA	NA	NA
WP_020460326.1\|3242496_3242886_+	hypothetical protein	NA	NA	NA	NA
WP_020460327.1\|3242889_3245040_+	hypothetical protein	NA	NA	NA	NA
WP_020460328.1\|3245049_3246375_+	PrgI family protein	NA	NA	NA	NA
WP_020460329.1\|3246371_3248264_+	DUF87 domain-containing protein	NA	NA	NA	NA
WP_041255829.1\|3248298_3250809_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_020460331.1\|3250825_3251842_+	hypothetical protein	NA	NA	NA	NA
WP_041255830.1\|3251899_3252880_+	C40 family peptidase	A0A1J0GW44	Streptomyces_phage	1.2e-11	39.8
WP_020460333.1\|3252998_3253874_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_020460334.1\|3253971_3254352_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_157472623.1\|3255180_3255405_+	hypothetical protein	NA	NA	NA	NA
WP_157472624.1\|3255814_3259900_+	TIR domain-containing protein	NA	NA	NA	NA
WP_020459004.1\|3260252_3260543_+\|transposase	IS3 family transposase	A9YX41	Burkholderia_phage	1.5e-10	44.1
WP_020460337.1\|3260539_3261280_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	1.2e-16	29.2
WP_063748341.1\|3262449_3263253_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	7.6e-17	29.2
WP_020459004.1\|3263249_3263540_-\|transposase	IS3 family transposase	A9YX41	Burkholderia_phage	1.5e-10	44.1
WP_083788217.1\|3263569_3265306_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_020460339.1\|3265313_3267140_-	AAA family ATPase	NA	NA	NA	NA
WP_020460340.1\|3267243_3268158_-	HNH endonuclease	NA	NA	NA	NA
WP_020460341.1\|3268665_3272019_+	hypothetical protein	NA	NA	NA	NA
WP_020460342.1\|3272507_3273770_-\|transposase	IS4-like element ISFsp5 family transposase	NA	NA	NA	NA
WP_020460343.1\|3273959_3274964_-	hypothetical protein	NA	NA	NA	NA
WP_085950115.1\|3275684_3275852_-	hypothetical protein	NA	NA	NA	NA
WP_157472625.1\|3276258_3276795_+	hypothetical protein	NA	NA	NA	NA
WP_157473254.1\|3276887_3277061_+	hypothetical protein	NA	NA	NA	NA
WP_020460349.1\|3278743_3279226_-	hypothetical protein	NA	NA	NA	NA
WP_020460350.1\|3279292_3279853_-	hypothetical protein	NA	NA	NA	NA
WP_020460351.1\|3280276_3281110_+\|transposase	IS5-like element ISFsp2 family transposase	NA	NA	NA	NA
WP_157472626.1\|3281186_3281462_-	hypothetical protein	NA	NA	NA	NA
WP_020460353.1\|3281774_3282290_-	transcriptional regulator	NA	NA	NA	NA
WP_020460354.1\|3282689_3283190_-	DUF3846 domain-containing protein	NA	NA	NA	NA
WP_020460355.1\|3283244_3283565_-	hypothetical protein	NA	NA	NA	NA
WP_041254128.1\|3284040_3284967_+	hypothetical protein	NA	NA	NA	NA
WP_020460358.1\|3285130_3286159_+	hypothetical protein	NA	NA	NA	NA
WP_020460359.1\|3286457_3286979_+	hypothetical protein	NA	NA	NA	NA
WP_020460360.1\|3287230_3290674_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_041254130.1\|3290710_3292552_-	hypothetical protein	NA	NA	NA	NA
3291428:3291444	attL	NA	NA	NA	NA
WP_041254131.1\|3292747_3293074_+	hypothetical protein	NA	NA	NA	NA
WP_020460363.1\|3293078_3293990_+	hypothetical protein	NA	NA	NA	NA
WP_020460364.1\|3293998_3294553_-	hypothetical protein	NA	NA	NA	NA
WP_020460365.1\|3295071_3295875_-	hypothetical protein	NA	NA	NA	NA
WP_157472627.1\|3296735_3296888_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_020460367.1\|3296884_3297205_+	hypothetical protein	Q1MVP5	Enterobacteria_phage	4.1e-06	42.4
WP_020460368.1\|3297201_3298068_+	hypothetical protein	NA	NA	NA	NA
WP_020460369.1\|3298229_3299057_+	hypothetical protein	NA	NA	NA	NA
WP_157472628.1\|3299078_3299243_-	hypothetical protein	NA	NA	NA	NA
WP_041254138.1\|3299796_3300048_+	hypothetical protein	NA	NA	NA	NA
WP_157473256.1\|3300413_3301268_+	hypothetical protein	NA	NA	NA	NA
WP_041254139.1\|3301716_3304701_+	hypothetical protein	NA	NA	NA	NA
WP_020460374.1\|3304956_3306213_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_020460375.1\|3306787_3307642_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_020460376.1\|3307927_3308305_+	hypothetical protein	NA	NA	NA	NA
WP_020460377.1\|3308358_3309378_-	hypothetical protein	NA	NA	NA	NA
WP_157473259.1\|3309368_3309929_-	hypothetical protein	NA	NA	NA	NA
WP_041254141.1\|3310917_3311100_+	FxLD family lantipeptide	NA	NA	NA	NA
WP_020460379.1\|3311179_3314245_+	lantibiotic dehydratase	NA	NA	NA	NA
WP_157473262.1\|3314250_3315441_+	lanthionine synthetase C family protein	NA	NA	NA	NA
WP_020460381.1\|3315504_3316701_+	methyltransferase, FxLD system	A0A1J0MC37	Streptomyces_phage	8.7e-17	43.4
WP_157473264.1\|3317009_3318575_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020460383.1\|3318645_3319098_+	dCMP deaminase	NA	NA	NA	NA
WP_083788219.1\|3319215_3320388_-	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA
WP_020460386.1\|3320814_3322731_-	hypothetical protein	NA	NA	NA	NA
WP_157472629.1\|3323057_3323510_+\|transposase	transposase	NA	NA	NA	NA
WP_157472630.1\|3323506_3323719_-	hypothetical protein	NA	NA	NA	NA
WP_020460375.1\|3323827_3324682_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_020460389.1\|3325510_3326698_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_157473267.1\|3326785_3327151_+	hypothetical protein	NA	NA	NA	NA
WP_157473270.1\|3328022_3329387_+\|integrase	integrase	NA	NA	NA	NA
WP_020460393.1\|3329478_3331239_+	hypothetical protein	NA	NA	NA	NA
WP_157473273.1\|3331349_3333365_+\|integrase	integrase	NA	NA	NA	NA
3344481:3344497	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3366175 : 3393654

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041255847.1\|3366175_3366886_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.5e-37	39.9
WP_157472633.1\|3366993_3367203_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_020460431.1\|3367290_3368235_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_020460432.1\|3368297_3368696_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_020458939.1\|3368762_3370379_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_020460433.1\|3370439_3371216_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020460434.1\|3371772_3372717_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020460435.1\|3372812_3373727_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_020460436.1\|3373859_3374288_+	SRPBCC family protein	NA	NA	NA	NA
WP_020460437.1\|3374305_3375382_+	amidohydrolase	NA	NA	NA	NA
WP_020460438.1\|3375378_3375843_+	DUF59 domain-containing protein	NA	NA	NA	NA
WP_020460439.1\|3375845_3376751_+	alpha/beta hydrolase	A0A167RJ59	Powai_lake_megavirus	2.5e-32	29.0
WP_020460440.1\|3376782_3378369_+	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	6.3e-31	26.0
WP_041254158.1\|3378558_3379497_+	NADP-dependent oxidoreductase	A0A2K9V7Y5	Bandra_megavirus	4.0e-09	28.9
WP_020460442.1\|3379685_3380591_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_020460443.1\|3380710_3381151_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020460444.1\|3381161_3382058_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_020460445.1\|3382070_3383249_-	MFS transporter	NA	NA	NA	NA
WP_020460446.1\|3383398_3383965_-	nucleoside-diphosphate sugar epimerase	NA	NA	NA	NA
WP_020458361.1\|3384115_3385504_+\|transposase	IS1380-like element ISFsp14 family transposase	A0A222ZN33	Mycobacterium_phage	6.3e-128	55.5
WP_020460447.1\|3385635_3386064_-	hypothetical protein	NA	NA	NA	NA
WP_020460448.1\|3386076_3386502_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020460449.1\|3386638_3387334_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_020460450.1\|3387478_3388363_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_020460451.1\|3388571_3389213_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.8e-35	40.7
WP_020460324.1\|3391102_3392491_+\|transposase	IS701-like element ISFsp9 family transposase	NA	NA	NA	NA
WP_020460454.1\|3392562_3393654_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

3402041 : 3484643

Prochlorococcus_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157473279.1\|3402041_3403133_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_157472634.1\|3403465_3404068_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_083788223.1\|3404257_3404785_-	hypothetical protein	NA	NA	NA	NA
WP_020460463.1\|3405295_3405562_+	hypothetical protein	NA	NA	NA	NA
WP_020460465.1\|3406320_3407262_-	3-carboxyethylcatechol 2,3-dioxygenase	NA	NA	NA	NA
WP_157473281.1\|3407258_3408947_-	3-(3-hydroxyphenyl)propionate hydroxylase	NA	NA	NA	NA
WP_020460467.1\|3408964_3409828_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_083788224.1\|3409914_3411366_-	MFS transporter	NA	NA	NA	NA
WP_020460469.1\|3411328_3411856_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_020460470.1\|3411852_3413514_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_083788225.1\|3413642_3414470_-	glucose 1-dehydrogenase	NA	NA	NA	NA
WP_083788226.1\|3414444_3414975_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_020460473.1\|3414987_3416349_-	MHS family MFS transporter	NA	NA	NA	NA
WP_020460475.1\|3417161_3417908_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020460476.1\|3418233_3419844_-	hypothetical protein	NA	NA	NA	NA
WP_020460478.1\|3421213_3422848_+\|transposase	ISAzo13-like element ISFsp12 family transposase	NA	NA	NA	NA
WP_020460480.1\|3423230_3424532_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020460482.1\|3424925_3425546_-	nitroreductase family protein	NA	NA	NA	NA
WP_020460483.1\|3425909_3427085_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_020460484.1\|3427088_3428108_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_020460485.1\|3428393_3429659_-	amidohydrolase	NA	NA	NA	NA
WP_085950160.1\|3429839_3430946_-	cytochrome P450	NA	NA	NA	NA
WP_020460487.1\|3431769_3432339_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_020460488.1\|3432361_3433135_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_020460489.1\|3433354_3434005_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_020460490.1\|3434061_3434910_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_020460491.1\|3434911_3435760_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_020460492.1\|3435756_3436584_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_041254162.1\|3436795_3437701_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_020460494.1\|3438094_3438646_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_020460495.1\|3438676_3439927_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_020460496.1\|3440031_3441168_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_020460497.1\|3441416_3442226_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_020460498.1\|3442411_3443497_+	S-(hydroxymethyl)mycothiol dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	7.8e-33	29.8
WP_020460501.1\|3444630_3444909_-\|transposase	transposase	NA	NA	NA	NA
WP_020460507.1\|3451358_3453044_-	diguanylate cyclase	G3MA91	Bacillus_virus	3.2e-17	31.0
WP_083788228.1\|3453377_3454619_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_085950161.1\|3454640_3455414_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_157472635.1\|3455632_3455779_+	hypothetical protein	NA	NA	NA	NA
WP_020460510.1\|3455782_3456631_+	hypothetical protein	NA	NA	NA	NA
WP_157473284.1\|3457076_3458615_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_020460512.1\|3458620_3460942_+	AMP-binding protein	A0A1V0SBX8	Catovirus	3.3e-36	25.4
WP_041255875.1\|3461076_3462204_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_020460514.1\|3462237_3463449_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_020460515.1\|3463495_3465670_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
WP_083788516.1\|3465689_3466553_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_157472636.1\|3466465_3468064_+	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA
WP_020460518.1\|3468101_3469235_+	DUF2236 domain-containing protein	NA	NA	NA	NA
WP_020460519.1\|3469284_3470448_+	CoA transferase	NA	NA	NA	NA
WP_020460520.1\|3470486_3472040_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_041254170.1\|3472257_3473157_+	hypothetical protein	NA	NA	NA	NA
WP_020460523.1\|3473853_3476646_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	4.2e-06	21.1
WP_020460524.1\|3476642_3477392_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.3e-10	25.5
WP_157472637.1\|3477556_3478816_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020460526.1\|3479247_3480459_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020460527.1\|3480621_3481713_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_020460528.1\|3481825_3482914_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_020460529.1\|3483191_3484643_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	8.3e-30	28.3

DBSCAN-SWA_6

3489517 : 3548424

Prochlorococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020460533.1\|3489517_3490351_-\|transposase	transposase	NA	NA	NA	NA
WP_020460534.1\|3490374_3492438_+	MMPL family transporter	NA	NA	NA	NA
WP_020460535.1\|3492647_3492920_-	hypothetical protein	NA	NA	NA	NA
WP_020460537.1\|3494229_3495678_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_020460538.1\|3495908_3497198_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_020460539.1\|3497194_3497530_+	hypothetical protein	NA	NA	NA	NA
WP_020460540.1\|3497526_3498372_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_020460541.1\|3498401_3499025_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_020460542.1\|3499215_3500241_+	ferredoxin--NADP reductase	E3SNZ1	Prochlorococcus_phage	5.0e-05	35.8
WP_041255885.1\|3500276_3501020_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.1e-14	29.3
WP_020460544.1\|3501016_3501670_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_020460545.1\|3501694_3502954_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_020460546.1\|3502950_3503283_+	hypothetical protein	NA	NA	NA	NA
WP_020460547.1\|3503279_3504569_+	amidohydrolase family protein	NA	NA	NA	NA
WP_020460548.1\|3504550_3504871_+	hypothetical protein	NA	NA	NA	NA
WP_020460549.1\|3505135_3506002_+	oxidoreductase FAD-binding subunit	NA	NA	NA	NA
WP_020460550.1\|3506256_3507840_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020460551.1\|3508484_3509183_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_083788230.1\|3509626_3509989_-	hypothetical protein	NA	NA	NA	NA
WP_020460553.1\|3509964_3511854_-	acyl-CoA synthetase	NA	NA	NA	NA
WP_020460554.1\|3511907_3512390_-	pyridoxamine 5'-phosphate oxidase-like protein	NA	NA	NA	NA
WP_041255890.1\|3512386_3514213_-	FAD-binding monooxygenase	NA	NA	NA	NA
WP_020460556.1\|3514228_3515176_-	amidohydrolase family protein	NA	NA	NA	NA
WP_041254179.1\|3515221_3515461_-	hypothetical protein	NA	NA	NA	NA
WP_020460558.1\|3515641_3516580_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_157472638.1\|3516977_3517673_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_157473287.1\|3521051_3521729_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_083788231.1\|3521759_3522356_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_020460564.1\|3522400_3523234_-\|transposase	IS5-like element ISFsp2 family transposase	NA	NA	NA	NA
WP_020460565.1\|3523510_3524782_-	NADH:flavin oxidoreductase	NA	NA	NA	NA
WP_049795946.1\|3525093_3526182_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_085950162.1\|3526405_3526531_+\|transposase	transposase	NA	NA	NA	NA
WP_020460567.1\|3526759_3529225_-	MMPL family transporter	NA	NA	NA	NA
WP_020460568.1\|3529771_3530974_+	2,3-dihydroxybiphenyl 1,2-dioxygenase	NA	NA	NA	NA
WP_020460569.1\|3530970_3531321_+	hypothetical protein	NA	NA	NA	NA
WP_157472639.1\|3531502_3532813_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020460571.1\|3533239_3534331_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_020460572.1\|3534405_3535563_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_012157514.1\|3535847_3536468_-	endonuclease	NA	NA	NA	NA
WP_012157515.1\|3536392_3536932_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020460574.1\|3537764_3538490_+	hypothetical protein	NA	NA	NA	NA
WP_020460575.1\|3538490_3539147_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_020460576.1\|3539260_3544174_-	diguanylate cyclase	M1I1A9	Paramecium_bursaria_Chlorella_virus	2.6e-06	32.8
WP_157472640.1\|3544411_3545038_+	hypothetical protein	A0A222ZN33	Mycobacterium_phage	7.0e-10	51.9
WP_083788232.1\|3545188_3545563_+	hypothetical protein	NA	NA	NA	NA
WP_041255900.1\|3545888_3547238_-	crotonyl-CoA carboxylase/reductase	NA	NA	NA	NA
WP_083788233.1\|3547401_3548424_-\|transposase	IS701 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

3563154 : 3659618

Tupanvirus(18.18%)

integrase,transposase

attL 3555939:3555955|attR 3603430:3603446

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3555939:3555955	attL	NA	NA	NA	NA
WP_020460592.1\|3563154_3564657_+\|transposase	ISKra4-like element ISFsp17 family transposase	NA	NA	NA	NA
WP_020460594.1\|3566247_3567489_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	7.3e-75	43.1
WP_020460597.1\|3568884_3569952_-\|transposase	transposase	NA	NA	NA	NA
WP_020460598.1\|3569961_3570348_-\|integrase	putative integrase/recombinase	NA	NA	NA	NA
WP_083788240.1\|3570280_3570727_-	NYN domain-containing protein	NA	NA	NA	NA
WP_020460599.1\|3571322_3572312_-	transporter	NA	NA	NA	NA
WP_083788241.1\|3572447_3573518_+\|transposase	transposase	NA	NA	NA	NA
WP_020460602.1\|3574247_3574484_-	hypothetical protein	NA	NA	NA	NA
WP_020460603.1\|3574480_3576022_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_020460604.1\|3576190_3578062_+	siderophore-interacting protein	NA	NA	NA	NA
WP_020460605.1\|3578127_3578418_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_020460606.1\|3578881_3579868_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041255912.1\|3579939_3580908_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	5.4e-09	22.0
WP_083788244.1\|3580904_3582014_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_020460608.1\|3582010_3582889_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.6e-07	23.0
WP_041255915.1\|3582942_3584643_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	8.9e-07	22.7
WP_041254190.1\|3584639_3586379_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_083788245.1\|3586743_3591147_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	9.8e-58	27.1
WP_020460614.1\|3592018_3592441_+	hypothetical protein	NA	NA	NA	NA
WP_020460616.1\|3593124_3594351_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_020460617.1\|3594354_3595803_-	FAD-binding dehydrogenase	NA	NA	NA	NA
WP_020460618.1\|3595868_3597494_-	AMP-binding protein	NA	NA	NA	NA
WP_020460619.1\|3597626_3598373_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_020460620.1\|3598987_3599239_-	MbtH family protein	NA	NA	NA	NA
WP_020460621.1\|3599272_3600592_-	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA
WP_020460622.1\|3600597_3601440_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_020460623.1\|3601512_3601767_-	phosphopantetheine-binding protein	NA	NA	NA	NA
WP_083788246.1\|3601750_3618700_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.7e-118	23.7
3603430:3603446	attR	NA	NA	NA	NA
WP_085950116.1\|3623464_3624666_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.8e-47	39.3
WP_012157515.1\|3624876_3625416_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012157514.1\|3625340_3625961_+	endonuclease	NA	NA	NA	NA
WP_083788247.1\|3629137_3629491_+	C40 family peptidase	A0A1J0GW44	Streptomyces_phage	3.0e-18	45.0
WP_020460632.1\|3629893_3630670_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	2.0e-14	36.2
WP_020460634.1\|3631691_3632432_-	hypothetical protein	NA	NA	NA	NA
WP_020460635.1\|3632609_3633140_-	transcriptional regulator	NA	NA	NA	NA
WP_020460636.1\|3633679_3634159_-	hypothetical protein	NA	NA	NA	NA
WP_157472643.1\|3634444_3634747_-	hypothetical protein	NA	NA	NA	NA
WP_157472644.1\|3634926_3635388_-	hypothetical protein	NA	NA	NA	NA
WP_041253905.1\|3635267_3636491_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_020460639.1\|3636724_3637273_-	hypothetical protein	NA	NA	NA	NA
WP_020460641.1\|3638581_3640099_-	propionyl-CoA carboxylase subunit beta	NA	NA	NA	NA
WP_020460642.1\|3640326_3646194_-	type I polyketide synthase	NA	NA	NA	NA
WP_085950117.1\|3646894_3648071_+\|transposase	IS3-like element ISFsp8 family transposase	U5P429	Shigella_phage	3.5e-42	38.5
WP_020460646.1\|3648423_3649527_-	hypothetical protein	NA	NA	NA	NA
WP_049795635.1\|3650303_3650573_-	hypothetical protein	NA	NA	NA	NA
WP_157472645.1\|3650909_3651056_-	hypothetical protein	NA	NA	NA	NA
WP_020460648.1\|3651397_3653308_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_157472584.1\|3653433_3653610_-	hypothetical protein	NA	NA	NA	NA
WP_020460650.1\|3654018_3654369_-	hypothetical protein	NA	NA	NA	NA
WP_157472646.1\|3654673_3654814_-	hypothetical protein	NA	NA	NA	NA
WP_020460651.1\|3655029_3655449_-	CBS domain-containing protein	A0A2I6B2H4	Macacine_betaherpesvirus	5.7e-08	27.6
WP_041255926.1\|3655927_3656719_-	amidohydrolase	NA	NA	NA	NA
WP_157472647.1\|3656802_3656970_-	hypothetical protein	NA	NA	NA	NA
WP_020458129.1\|3658589_3659618_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

3682195 : 3754928

Staphylococcus_phage(25.0%)

integrase,transposase

attL 3710242:3710262|attR 3756264:3756284

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020460679.1\|3682195_3682981_-\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_020460680.1\|3683318_3684122_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_020460681.1\|3684169_3684613_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_157472651.1\|3684756_3685023_+	hypothetical protein	NA	NA	NA	NA
WP_049795948.1\|3685106_3685856_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-32	41.1
WP_020460684.1\|3685914_3686760_+	ABC transporter permease	NA	NA	NA	NA
WP_020460685.1\|3686834_3687554_+	Asp/Glu racemase	NA	NA	NA	NA
WP_020460686.1\|3687574_3688279_+	hypothetical protein	NA	NA	NA	NA
WP_020460687.1\|3688412_3689612_+	amidohydrolase family protein	NA	NA	NA	NA
WP_083788253.1\|3689463_3690504_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_083788254.1\|3690544_3691381_+	hypothetical protein	NA	NA	NA	NA
WP_020460690.1\|3691628_3692447_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_020460691.1\|3692443_3693703_+	CoA transferase	NA	NA	NA	NA
WP_020460692.1\|3693794_3694544_+	enoyl-CoA hydratase family protein	NA	NA	NA	NA
WP_049795674.1\|3696449_3698156_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.5e-09	28.8
WP_041254213.1\|3698795_3699980_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_020460696.1\|3700684_3701239_-	PadR family transcriptional regulator	NA	NA	NA	NA
WP_157473296.1\|3701305_3702856_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	3.5e-34	25.3
WP_020460698.1\|3702941_3704090_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_020460699.1\|3704099_3704909_+	TIGR03084 family protein	NA	NA	NA	NA
WP_020460700.1\|3705077_3705695_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_157472652.1\|3705691_3705922_+	hypothetical protein	NA	NA	NA	NA
WP_157472653.1\|3706063_3706537_+	hypothetical protein	NA	NA	NA	NA
WP_020460702.1\|3706562_3707864_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020460703.1\|3707965_3710797_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
3710242:3710262	attL	NA	NA	NA	NA
WP_157472654.1\|3710803_3713065_-	MFS transporter	A0A2H4PQG7	Staphylococcus_phage	1.1e-12	27.1
WP_049795676.1\|3713484_3714405_-	alpha/beta hydrolase	M1PGN2	Moumouvirus	4.2e-27	30.9
WP_020460706.1\|3714847_3717070_-	beta-glucosidase	NA	NA	NA	NA
WP_020460707.1\|3718033_3719410_-	amidase	NA	NA	NA	NA
WP_020460708.1\|3719912_3720134_-	hypothetical protein	NA	NA	NA	NA
WP_041254214.1\|3721714_3724198_+	DUF4982 domain-containing protein	L0N6M2	Herpes_simplex_virus	8.7e-19	34.9
WP_020460711.1\|3724328_3724787_+	hypothetical protein	NA	NA	NA	NA
WP_157472655.1\|3725141_3726437_+	hypothetical protein	NA	NA	NA	NA
WP_083788255.1\|3726565_3727099_-\|transposase	transposase	NA	NA	NA	NA
WP_083788256.1\|3727183_3727831_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_157472656.1\|3730054_3730711_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_157472657.1\|3731507_3732974_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_020460718.1\|3733355_3733976_-	endonuclease	NA	NA	NA	NA
WP_012157515.1\|3733900_3734440_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020460719.1\|3734740_3735949_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020460720.1\|3736210_3736819_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_020460722.1\|3737309_3738344_-	putative amidase protein	NA	NA	NA	NA
WP_020460723.1\|3738509_3739247_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.8e-20	34.0
WP_041254217.1\|3739338_3740664_-	hypothetical protein	NA	NA	NA	NA
WP_157472658.1\|3742783_3744391_+	hypothetical protein	NA	NA	NA	NA
WP_083788257.1\|3744287_3744713_-\|transposase	transposase	NA	NA	NA	NA
WP_020460730.1\|3745901_3748451_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	3.0e-27	34.0
WP_020460731.1\|3749132_3750065_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_020460732.1\|3750061_3750892_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_020460733.1\|3750946_3752143_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_020460734.1\|3752139_3752811_+	response regulator transcription factor	NA	NA	NA	NA
WP_049795681.1\|3753434_3754928_+\|transposase	IS630 family transposase	NA	NA	NA	NA
3756264:3756284	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3970822 : 4049702

Catovirus(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041255992.1\|3970822_3972028_+\|transposase	transposase	I4AZI9	Saccharomonospora_phage	2.0e-45	36.1
WP_157472666.1\|3973287_3973440_+	hypothetical protein	NA	NA	NA	NA
WP_020460899.1\|3973681_3975316_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_041255994.1\|3975442_3976159_+	response regulator	W8CYM9	Bacillus_phage	5.4e-06	34.6
WP_041254260.1\|3976251_3977577_+	ketoacyl synthase	NA	NA	NA	NA
WP_020460902.1\|3977711_3984374_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	1.1e-31	35.8
WP_041254262.1\|3984505_3984775_+	metal-sensitive transcriptional regulator	NA	NA	NA	NA
WP_020460904.1\|3984976_3986377_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_020460905.1\|3986373_3986967_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_020460906.1\|3986994_3987774_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_020460907.1\|3987892_3989848_-	peptidase M13	A0A1V0SHG2	Klosneuvirus	1.1e-85	28.1
WP_041255997.1\|3990175_3991060_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_020460909.1\|3991130_3992345_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_157472667.1\|3993014_3993185_-	hypothetical protein	NA	NA	NA	NA
WP_020460910.1\|3993442_3993763_-	hypothetical protein	NA	NA	NA	NA
WP_020460911.1\|3993790_3995035_-	amidohydrolase family protein	NA	NA	NA	NA
WP_020460912.1\|3995031_3995364_-	hypothetical protein	NA	NA	NA	NA
WP_083788524.1\|3996229_3997060_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.1e-13	28.8
WP_020460915.1\|3997074_3998184_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_020460916.1\|3998374_3999010_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_020460917.1\|3999039_3999885_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_020460918.1\|3999881_4000217_-	hypothetical protein	NA	NA	NA	NA
WP_020460919.1\|4000213_4001503_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_020460920.1\|4001734_4003183_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_041254268.1\|4003360_4004359_+	aldo/keto reductase	NA	NA	NA	NA
WP_157472668.1\|4005209_4005659_+	hypothetical protein	NA	NA	NA	NA
WP_157473314.1\|4006126_4007215_+	TIGR03621 family F420-dependent LLM class oxidoreductase	NA	NA	NA	NA
WP_020460925.1\|4007290_4008241_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_020460926.1\|4008396_4009269_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_020460927.1\|4009389_4010163_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_020460929.1\|4010799_4011465_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_020460930.1\|4011694_4013626_-	molecular chaperone HtpG	A0A1V0SAD6	Catovirus	5.2e-104	32.6
WP_020460931.1\|4014504_4014921_+	DNA-binding protein	NA	NA	NA	NA
WP_020460932.1\|4014955_4016098_+	thiolase family protein	NA	NA	NA	NA
WP_020460933.1\|4016134_4016815_-	response regulator transcription factor	NA	NA	NA	NA
WP_020460934.1\|4016717_4018055_-	sensor histidine kinase	NA	NA	NA	NA
WP_041256004.1\|4018171_4020445_-	MMPL family transporter	NA	NA	NA	NA
WP_083788265.1\|4020764_4021391_+	DUF2993 domain-containing protein	NA	NA	NA	NA
WP_020460937.1\|4021636_4022860_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020460938.1\|4022953_4025824_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.7e-10	24.4
WP_020460939.1\|4025830_4026520_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.8e-12	24.4
WP_020460940.1\|4026653_4028168_+	MFS transporter	NA	NA	NA	NA
WP_020460941.1\|4028175_4029762_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_020460942.1\|4029789_4031358_-	acyl-CoA synthetase	A0A1V0SBX8	Catovirus	2.2e-07	23.2
WP_020460943.1\|4031477_4032566_-	hydrogenase expression/formation protein HypE	NA	NA	NA	NA
WP_020460944.1\|4032562_4033651_-	hydrogenase formation protein HypD	NA	NA	NA	NA
WP_020460945.1\|4033647_4033890_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_020460946.1\|4034025_4035228_+	hydrogenase small subunit	NA	NA	NA	NA
WP_020460947.1\|4035224_4036946_+	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA
WP_041254272.1\|4036948_4037629_+	hydrogenase	NA	NA	NA	NA
WP_020460949.1\|4037625_4038201_+	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA
WP_020460950.1\|4038193_4038514_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_041254273.1\|4038596_4039307_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.2e-36	41.3
WP_041254274.1\|4042770_4044030_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_083788266.1\|4044348_4045419_-\|transposase	transposase	NA	NA	NA	NA
WP_083788267.1\|4045411_4046086_+\|transposase	transposase	NA	NA	NA	NA
WP_020460959.1\|4046249_4047026_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
WP_157472669.1\|4048661_4048817_-	hypothetical protein	NA	NA	NA	NA
WP_157472670.1\|4048994_4049702_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

4533892 : 4560065

Bacillus_phage(33.33%)

transposase,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020461345.1\|4533892_4535461_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	9.2e-67	32.7
WP_020461346.1\|4535507_4535948_+\|tail	phage tail protein	A0A1J0GW41	Streptomyces_phage	1.0e-07	27.3
WP_157473417.1\|4535998_4536391_+	hypothetical protein	NA	NA	NA	NA
WP_041254345.1\|4536549_4538841_+	hypothetical protein	NA	NA	NA	NA
WP_116430129.1\|4538951_4539374_+\|tail	phage tail protein	NA	NA	NA	NA
WP_020461350.1\|4539370_4540060_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_157472696.1\|4540056_4541799_+	VgrG-related protein	NA	NA	NA	NA
WP_020461352.1\|4541843_4542236_+	hypothetical protein	NA	NA	NA	NA
WP_020461353.1\|4542235_4542664_+	GPW/gp25 family protein	A0A2I7QXF4	Vibrio_phage	6.3e-10	32.7
WP_020461354.1\|4542660_4544781_+\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_020461355.1\|4544777_4545305_+\|tail	tail protein	NA	NA	NA	NA
WP_020461356.1\|4545249_4548558_-	transcriptional regulator	NA	NA	NA	NA
WP_157472697.1\|4549084_4549849_+	hypothetical protein	NA	NA	NA	NA
WP_157472698.1\|4550559_4551333_+	hypothetical protein	NA	NA	NA	NA
WP_041254348.1\|4551689_4552121_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_020461361.1\|4554355_4554607_-	hypothetical protein	NA	NA	NA	NA
WP_020461362.1\|4554834_4556964_+	sensor histidine kinase	NA	NA	NA	NA
WP_020461363.1\|4556960_4557614_+	response regulator transcription factor	NA	NA	NA	NA
WP_020461364.1\|4557831_4558383_-	hypothetical protein	NA	NA	NA	NA
WP_020461074.1\|4558388_4560065_-\|transposase	IS1182 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

5307802 : 5335042

Mollivirus(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083788301.1\|5307802_5308426_+\|transposase	transposase	NA	NA	NA	NA
WP_020461949.1\|5308710_5310381_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.3e-12	33.8
WP_020461950.1\|5310429_5310843_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_020461952.1\|5312885_5313707_-	mycofactocin-coupled SDR family oxidoreductase	NA	NA	NA	NA
WP_020461953.1\|5314190_5315387_-	cytochrome P450	NA	NA	NA	NA
WP_020461955.1\|5316688_5318449_-	iron ABC transporter permease	NA	NA	NA	NA
WP_020461956.1\|5318448_5319591_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.5e-23	33.0
WP_020461957.1\|5319628_5320699_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_041254570.1\|5320989_5322162_-	amidohydrolase family protein	NA	NA	NA	NA
WP_020461960.1\|5322918_5324346_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_020461961.1\|5324475_5325240_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	1.0e-07	33.3
WP_020461962.1\|5325236_5326145_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_020461963.1\|5326187_5327006_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	4.4e-12	29.7
WP_083788302.1\|5327165_5327402_+	hypothetical protein	NA	NA	NA	NA
WP_020461964.1\|5328031_5328838_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_020461965.1\|5329336_5330425_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_085950123.1\|5330469_5331421_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_020461970.1\|5332669_5332984_-\|transposase	transposase	U5P429	Shigella_phage	1.2e-15	46.7
WP_157472747.1\|5332964_5334164_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.6e-32	34.7
WP_020461972.1\|5334238_5335042_-\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	7.6e-17	29.2

DBSCAN-SWA_12

6686577 : 6717918

uncultured_Caudovirales_phage(25.0%)

integrase,protease,transposase

attL 6703044:6703080|attR 6718678:6718714

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049796030.1\|6686577_6687801_-\|integrase	site-specific integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	2.1e-42	29.9
WP_020462981.1\|6688259_6688559_-	hypothetical protein	NA	NA	NA	NA
WP_049795772.1\|6688724_6688913_+	hypothetical protein	NA	NA	NA	NA
WP_020462983.1\|6688919_6689117_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020462984.1\|6689147_6690857_-	hypothetical protein	NA	NA	NA	NA
WP_049795773.1\|6690834_6691092_-	hypothetical protein	NA	NA	NA	NA
WP_020462985.1\|6691088_6692660_-	cell division protein FtsK	NA	NA	NA	NA
WP_035752633.1\|6692809_6693085_-	hypothetical protein	NA	NA	NA	NA
WP_020462986.1\|6693096_6693507_-	hypothetical protein	NA	NA	NA	NA
WP_020458361.1\|6693903_6695292_-\|transposase	IS1380-like element ISFsp14 family transposase	A0A222ZN33	Mycobacterium_phage	6.3e-128	55.5
WP_020462987.1\|6695444_6695840_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_083788340.1\|6695897_6696362_-	hypothetical protein	NA	NA	NA	NA
WP_020462989.1\|6696719_6697703_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_020462990.1\|6697689_6698886_+	hypothetical protein	NA	NA	NA	NA
WP_083788341.1\|6698770_6699259_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_020462991.1\|6699467_6700640_+	DUF262 domain-containing protein	A0A0R6PKN1	Moraxella_phage	8.0e-15	25.1
WP_157472816.1\|6700623_6701187_+	hypothetical protein	NA	NA	NA	NA
WP_020460342.1\|6701578_6702841_+\|transposase	IS4-like element ISFsp5 family transposase	NA	NA	NA	NA
6703044:6703080	attL	NA	NA	NA	NA
WP_020462993.1\|6703154_6704435_-\|integrase	site-specific integrase	A0A162E140	Gordonia_phage	8.9e-36	31.3
WP_020462994.1\|6704434_6704644_-	hypothetical protein	NA	NA	NA	NA
WP_041253905.1\|6705061_6706285_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_020462995.1\|6706495_6706795_-	hypothetical protein	NA	NA	NA	NA
WP_020462996.1\|6706917_6707112_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020462997.1\|6707140_6708862_-	hypothetical protein	NA	NA	NA	NA
WP_041254851.1\|6708858_6709071_-	hypothetical protein	NA	NA	NA	NA
WP_020462998.1\|6709067_6710621_-	cell division protein FtsK	NA	NA	NA	NA
WP_020462999.1\|6710745_6711150_-	hypothetical protein	NA	NA	NA	NA
WP_020463000.1\|6711372_6711753_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_049796031.1\|6711822_6712224_-	hypothetical protein	NA	NA	NA	NA
WP_020463002.1\|6712274_6712559_-	hypothetical protein	NA	NA	NA	NA
WP_020463003.1\|6712759_6714091_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041256590.1\|6714145_6714820_+	hypothetical protein	NA	NA	NA	NA
WP_157472817.1\|6715023_6715929_+	hypothetical protein	NA	NA	NA	NA
WP_083788342.1\|6716162_6716576_-	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_157472818.1\|6716514_6717918_-\|protease	serine protease	NA	NA	NA	NA
6718678:6718714	attR	NA	NA	NA	NA

DBSCAN-SWA_13

8097946 : 8174752

Mycobacterium_phage(37.5%)

integrase,holin,transposase

attL 8155257:8155273|attR 8177080:8177096

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020464074.1\|8097946_8098528_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_020464075.1\|8098663_8099188_+	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_049795818.1\|8099188_8100532_-	DUF4407 domain-containing protein	NA	NA	NA	NA
WP_020464077.1\|8100849_8101299_+	SRPBCC family protein	NA	NA	NA	NA
WP_083788384.1\|8101347_8102445_-	sensor histidine kinase	NA	NA	NA	NA
WP_041255057.1\|8102811_8105535_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_157473737.1\|8105711_8106563_-	hypothetical protein	NA	NA	NA	NA
WP_157473739.1\|8106820_8108935_-	acyltransferase family protein	A0A166XZF2	Gordonia_phage	1.4e-70	31.0
WP_157472889.1\|8108984_8110436_-	hypothetical protein	NA	NA	NA	NA
WP_020464083.1\|8110546_8111881_-	glycosyltransferase	NA	NA	NA	NA
WP_041256810.1\|8113726_8115058_-	AAA family ATPase	B5LJN2	Mycobacterium_phage	1.0e-34	37.4
WP_020464087.1\|8115977_8117111_+	ATPase	NA	NA	NA	NA
WP_157472890.1\|8117236_8117677_-	hypothetical protein	NA	NA	NA	NA
WP_020464089.1\|8117673_8118555_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_020464090.1\|8119024_8119648_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_020464091.1\|8119736_8120216_+	polyketide cyclase	NA	NA	NA	NA
WP_020464092.1\|8121451_8122777_+	hypothetical protein	NA	NA	NA	NA
WP_020464093.1\|8124438_8125608_+	HAF repeat-containing protein	NA	NA	NA	NA
WP_157473741.1\|8125610_8126360_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_157473743.1\|8126461_8127067_-	hypothetical protein	NA	NA	NA	NA
WP_041255060.1\|8128293_8129022_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_020464100.1\|8131987_8133079_+	AMP-binding protein	NA	NA	NA	NA
WP_020464101.1\|8133078_8134458_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_020464102.1\|8134793_8135669_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA
WP_157472891.1\|8135665_8135872_-	hypothetical protein	NA	NA	NA	NA
WP_157472892.1\|8136122_8138003_+	sensor histidine kinase	NA	NA	NA	NA
WP_041256815.1\|8138032_8138773_+	response regulator	NA	NA	NA	NA
WP_083788385.1\|8138664_8139048_-	response regulator transcription factor	W8CYM9	Bacillus_phage	7.1e-05	37.1
WP_041255061.1\|8139168_8139672_+	hypothetical protein	NA	NA	NA	NA
WP_157473745.1\|8139668_8140340_+	hypothetical protein	NA	NA	NA	NA
WP_020464107.1\|8140336_8140963_+	hypothetical protein	NA	NA	NA	NA
WP_020464108.1\|8141079_8141922_+	hypothetical protein	NA	NA	NA	NA
WP_020464109.1\|8141932_8142727_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_020464110.1\|8142723_8144190_+	phosphotransferase	NA	NA	NA	NA
WP_157473747.1\|8144198_8147513_+	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	5.3e-32	28.1
WP_020464112.1\|8147946_8148984_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.1e-131	72.5
WP_157473749.1\|8149941_8150919_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_041255062.1\|8151354_8152545_+	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	1.3e-12	25.1
WP_020464115.1\|8152573_8153539_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_020464116.1\|8153555_8154269_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_020464117.1\|8154280_8155348_+\|transposase	transposase	NA	NA	NA	NA
8155257:8155273	attL	NA	NA	NA	NA
WP_157472893.1\|8155322_8156066_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_083788388.1\|8156311_8157223_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041255065.1\|8161157_8161340_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_020464122.1\|8161442_8163413_+\|integrase	tyrosine-type recombinase/integrase	A0A0F6YRM4	Mycobacterium_phage	3.8e-17	24.9
WP_157472894.1\|8164059_8164683_-	hypothetical protein	NA	NA	NA	NA
WP_020464123.1\|8165207_8167730_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_157473751.1\|8168398_8171344_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_157473753.1\|8173309_8174752_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WIE1	Clostridium_phage	9.8e-15	22.6
8177080:8177096	attR	NA	NA	NA	NA

DBSCAN-SWA_14

8595189 : 8679396

Cyanophage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020464441.1\|8595189_8595486_-\|transposase	transposase	NA	NA	NA	NA
WP_020464442.1\|8595571_8596594_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_157472915.1\|8597110_8597293_+	hypothetical protein	NA	NA	NA	NA
WP_020464443.1\|8597398_8598604_+	fructotransferase	NA	NA	NA	NA
WP_041255139.1\|8598645_8601081_+	glycosyl hydrolase family 32	NA	NA	NA	NA
WP_049795845.1\|8603109_8604372_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041256909.1\|8604454_8605342_+	sugar ABC transporter permease	NA	NA	NA	NA
WP_020464448.1\|8605338_8606178_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_020464449.1\|8606293_8607415_+	DUF2961 domain-containing protein	NA	NA	NA	NA
WP_020464450.1\|8607485_8608538_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_020464451.1\|8608573_8609617_+	glycosyl hydrolase family 32	NA	NA	NA	NA
WP_020464452.1\|8609710_8610160_-\|transposase	transposase	NA	NA	NA	NA
WP_020464453.1\|8610226_8610535_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_020464454.1\|8612041_8612860_+	shikimate 5-dehydrogenase	NA	NA	NA	NA
WP_020464455.1\|8613324_8613807_+	resolvase	NA	NA	NA	NA
WP_049795846.1\|8614357_8616565_-	hypothetical protein	NA	NA	NA	NA
WP_020464457.1\|8616627_8616987_-	hypothetical protein	NA	NA	NA	NA
WP_020464458.1\|8617487_8617976_-	hypothetical protein	NA	NA	NA	NA
WP_020464459.1\|8618726_8620721_+	restriction endonuclease	NA	NA	NA	NA
WP_083788433.1\|8621277_8622729_-	family 43 glycosylhydrolase	NA	NA	NA	NA
WP_020464462.1\|8622637_8623294_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_020464418.1\|8623290_8625123_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_020464463.1\|8625119_8626598_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	2.0e-71	35.3
WP_041255142.1\|8627240_8627600_-	hypothetical protein	NA	NA	NA	NA
WP_083788596.1\|8627886_8629794_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_020464465.1\|8630051_8631092_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_041255144.1\|8631088_8631535_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_020464469.1\|8633197_8634148_-	1-phosphofructokinase	NA	NA	NA	NA
WP_020464470.1\|8634144_8634906_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_049795848.1\|8635215_8636391_+	PucR family transcriptional regulator	NA	NA	NA	NA
WP_020464473.1\|8636986_8637658_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_020464474.1\|8638104_8643036_-	diguanylate cyclase	NA	NA	NA	NA
WP_020464475.1\|8643258_8643729_+	protein kinase	NA	NA	NA	NA
WP_041255145.1\|8644124_8644433_-	hypothetical protein	NA	NA	NA	NA
WP_020464477.1\|8645497_8646679_-	hypothetical protein	NA	NA	NA	NA
WP_020464478.1\|8646708_8647020_-	hypothetical protein	NA	NA	NA	NA
WP_083788437.1\|8648759_8652791_+	hypothetical protein	NA	NA	NA	NA
WP_157473798.1\|8652878_8655071_+	protein kinase	A0A2H4UVE2	Bodo_saltans_virus	3.8e-18	28.4
WP_020464482.1\|8655966_8656896_+	TIGR03564 family F420-dependent LLM class oxidoreductase	NA	NA	NA	NA
WP_020464483.1\|8657125_8657683_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_157472916.1\|8657720_8658299_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_020464485.1\|8659009_8659480_-	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_020464486.1\|8660846_8661938_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_020460528.1\|8662006_8663095_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_020464487.1\|8663347_8664106_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_020464488.1\|8664102_8664873_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_020464489.1\|8665264_8665885_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_020464491.1\|8667259_8668450_+	cytochrome P450	NA	NA	NA	NA
WP_020464492.1\|8668597_8669887_+	amidohydrolase	NA	NA	NA	NA
WP_157472917.1\|8669976_8671605_-	histidine kinase	NA	NA	NA	NA
WP_020464494.1\|8674446_8675067_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_020464495.1\|8675280_8676117_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_020460324.1\|8678007_8679396_+\|transposase	IS701-like element ISFsp9 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009921

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection