CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NC_009792	Citrobacter koseri ATCC BAA-895, complete sequence	9 crisprs	DEDDh,DinG,cas3,cas6f,PD-DExK	1	4	1
NC_009793	Citrobacter koseri ATCC BAA-895 plasmid pCKO3, complete sequence	0 crisprs	NA	0	0	0
NC_009794	Citrobacter koseri ATCC BAA-895 plasmid pCKO2, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009792_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009792_1

395325-395409

Orphan

Consensus_repeat	Method
TTTACGCCGCCATCCGGCGGTTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009792_1

>merge|NC_009792|1|395325-395409|CRISPRCasFinder
TTTACGCCGCCATCCGGCGGTTACGCCCGGTTATCCGTTTTACGCGTAGGCCGGATAAGGCGTTTACGCCGCCATCCGGCGGTTA

>NC_009792|1|1|395325-395409|CRISPRCasFinder
TTTACGCCGCCATCCGGCGGTTA	CGCCCGGTTATCCGTTTTACGCGTAGGCCGGATAAGGCG
TTTACGCCGCCATCCGGCGGTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009792.1\|WP_024130139.1\|386288_387524_-\|ion-channel-protein	unknown	unknown	gnl\|CDD\|235148
NC_009792.1\|WP_012131393.1\|384619_386275_+\|indolepyruvate-decarboxylase	unknown	unknown	gnl\|CDD\|274559
NC_009792.1\|WP_010723117.1\|400404_400476_-\|membrane-protein-YpdK	unknown	unknown	unknown
NC_009792.1\|WP_024130141.1\|390543_391629_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182080
NC_009792.1\|WP_012131412.1\|410395_411907_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|376350
NC_009792.1\|WP_012131410.1\|402694_409654_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|184851
NC_009792.1\|WP_012131398.1\|389279_390527_+\|PTS-fructose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224218
NC_009792.1\|WP_012131391.1\|383438_384437_-\|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl\|CDD\|381377
NC_009792.1\|WP_024130140.1\|388932_389259_+\|PTS-fructose-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|224362
NC_009792.1\|WP_012131411.1\|409751_410333_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_009792.1\|WP_012131396.1\|387728_388694_+\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NC_009792.1\|WP_012131406.1\|400855_401776_-\|kdo(2)-lipid-IV(A)-palmitoleoyltransferase	unknown	unknown	gnl\|CDD\|181200
NC_009792.1\|WP_012131414.1\|412546_414442_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
NC_009792.1\|WP_012131400.1\|391628_392666_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182170
NC_009792.1\|WP_012131401.1\|392692_395188_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NC_009792.1\|WP_024130138.1\|382993_383314_-\|DUF2502-domain-containing-protein	unknown	unknown	gnl\|CDD\|371199
NC_009792.1\|WP_012131403.1\|396278_397013_-\|two-component-system-response-regulator-YpdB	unknown	unknown	gnl\|CDD\|225818
NC_009792.1\|WP_012131413.1\|412097_412532_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_009792.1\|WP_024130142.1\|397027_398725_-\|two-component-system-sensor-histidine-kinase-YpdA	unknown	unknown	gnl\|CDD\|225814
NC_009792.1\|WP_012131405.1\|399114_400353_+\|alanine-transaminase	unknown	unknown	gnl\|CDD\|181268

Protein	Function_ID	Function_description	E-value
NC_009792.1\|WP_024130139.1\|386288_387524_-\|ion-channel-protein	gnl\|CDD\|235148	PRK03655, PRK03655, putative ion channel protein; Provisional.	0
NC_009792.1\|WP_012131393.1\|384619_386275_+\|indolepyruvate-decarboxylase	gnl\|CDD\|274559	TIGR03393, Indole-3-pyruvate_decarboxylase, indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria. [Central intermediary metabolism, Other].	0
NC_009792.1\|WP_024130141.1\|390543_391629_+\|aminopeptidase	gnl\|CDD\|182080	PRK09795, PRK09795, aminopeptidase; Provisional.	0
NC_009792.1\|WP_012131412.1\|410395_411907_+\|EAL-domain-containing-protein	gnl\|CDD\|376350	pfam00563, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site.	3.96833e-48
NC_009792.1\|WP_012131410.1\|402694_409654_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|184851	PRK14849, PRK14849, autotransporter barrel domain-containing lipoprotein.	0
NC_009792.1\|WP_012131398.1\|389279_390527_+\|PTS-fructose-transporter-subunit-IIC	gnl\|CDD\|224218	COG1299, FruA, Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism].	1.67078e-87
NC_009792.1\|WP_012131391.1\|383438_384437_-\|L-glyceraldehyde-3-phosphate-reductase	gnl\|CDD\|381377	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2).	0
NC_009792.1\|WP_024130140.1\|388932_389259_+\|PTS-fructose-transporter-subunit-IIB	gnl\|CDD\|224362	COG1445, FrwB, Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism].	6.80727e-39
NC_009792.1\|WP_012131411.1\|409751_410333_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.64541e-08
NC_009792.1\|WP_012131396.1\|387728_388694_+\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	0
NC_009792.1\|WP_012131406.1\|400855_401776_-\|kdo(2)-lipid-IV(A)-palmitoleoyltransferase	gnl\|CDD\|181200	PRK08025, PRK08025, kdo(2)-lipid IV(A) palmitoleoyltransferase.	0
NC_009792.1\|WP_012131414.1\|412546_414442_-\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	0
NC_009792.1\|WP_012131400.1\|391628_392666_+\|aminopeptidase	gnl\|CDD\|182170	PRK09961, PRK09961, aminopeptidase.	0
NC_009792.1\|WP_012131401.1\|392692_395188_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NC_009792.1\|WP_024130138.1\|382993_383314_-\|DUF2502-domain-containing-protein	gnl\|CDD\|371199	pfam10697, DUF2502, Protein of unknown function (DUF2502). Members of this family are all Gammaproteobacteria. The function is not known.	5.48739e-14
NC_009792.1\|WP_012131403.1\|396278_397013_-\|two-component-system-response-regulator-YpdB	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	2.27774e-81
NC_009792.1\|WP_012131413.1\|412097_412532_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	1.389e-12
NC_009792.1\|WP_024130142.1\|397027_398725_-\|two-component-system-sensor-histidine-kinase-YpdA	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NC_009792.1\|WP_012131405.1\|399114_400353_+\|alanine-transaminase	gnl\|CDD\|181268	PRK08175, PRK08175, aminotransferase; Validated.	0

>NC_009792.1|WP_012131401.1|392692_395188_+|phosphoenolpyruvate--protein-phosphotransferase
MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEVTFINHRQNARADAKSSLALIGTGTLFNDSCSLNISGSDEEQARRSLETYLQHRFIDSDSVQPTSAELAAHPLPRSLVRLNPDLLYGAVLANGVGAGALTLWQNDNLEAYRAIPASAEDSTRLEHSLATLAEQLNQQLRERDGESKTILSAHLSLIQDDEFAGNIRRLMDEQHKGLGAAIIANMEQVCDKLSSSASDYLRERVSDIRDISEQLLHITWPERRPRNTLILEQPTILVAEDLTPSQFLSLDLQHLSGMILEKTGRTSHTLILARASAIPVLSGLPLDALGRYAGQPAVLDAQCGVLAINPNAAVCGYYAIAQQLADKRQQQQAREASLPAFSRDNQRLDIAANIGTALEAPGAFANGAEGIGLFRTEMLFMDRDSAPDEQEQFEAYQQVLLAAGEKPVIFRTMDIGGDKNIRYLNIPQEENPFLGYRAVRIYPEFAGLFRTQLRAILRAATFGQAQLMIPMVHSLDQILWVKSELQKAIVELKRDGLRHAATIPLGIMVEVPSVCYIIDHFCDEVDFFSIGSNDMTQYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVRTAHQHGKWVGICGELGGESRYLPLLLGLELDELSMSSPRIPGVKSQLRQMDSQACRALAAQACECRSAEEIETLLNQFAPQKDVRPLLALENIFVGESLSNKEQVIQFLCGNLGVNGRTEHPFELEEDVWQREEIVTTAVGFGVAIPHTKSQWIRHSSISIARLARPVDWQSEMGEVELVIMLTLGADEGINHVKVFSQLARKLVNKNFRQSLFAAQDAESLLALLEAELTF
>NC_009792.1|WP_012131400.1|391628_392666_+|aminopeptidase
MDLSLLKALSEADAIASSEQEVRQILLEEADRLHKEVRFDGLGSVLIRLNESDGPKVMICAHMDEVGFIVRSISSEGAIDVLPVGNVRMAARQLQPVRITTREDSKIPGLLDGERNGNEVGALRVDIGARSYDEVIQAGVRPGDRVTFDSAFQVLPHQRVMGKAFDDRLGCYLLIMLLRAWHDAALPAEVWLVASSSEEVGLRGGQTAARAVAPDIAIVLDTACWAKNFDYGAANHRQIGKGPMLVLADKSLIAPPKLTAWVESVASDSGLPLQLDMFSNGGTDGGAVHLTGTGTPTVVIGPATRHGHCAASIADCRDIIHTQQLLSALITRLTRETVVHLTDFR
>NC_009792.1|WP_024130141.1|390543_391629_+|aminopeptidase
MTLRASLRQWLVEQRLDAVLISSRQNKQPHLGISSSAGFVFITHKSAHLLVDGRYYADVEARAHGDQLHLLAGSQTLTSIVNQIIDDEQLQVIGFEGAQVSWDCAQRWQERLRAKLVSASPDALRQIKTAQEIALIREACRIADCSAEHIRRFIRPGLREREIAAELEWFMRQQGAEKASFDTIVASGWRGALPHGKASEKIVAAGEFITLDFGAQYQGYCSDMTRTFLVSGQDAPVASHPLFAVYQTVLEAQQTAIAAIRPGVCCQAVDAAARRVIEAAGYGDYFGHNTGHAIGIEVHEAPRFSPTDTTRLAAGMLLTVEPGIYLPGQGGVRIEDVVLVTEDGAEVLYTMPKTVLLTGEA
>NC_009792.1|WP_012131398.1|389279_390527_+|PTS-fructose-transporter-subunit-IIC
MAIKKRSATVVHGASGAAAAIKTPPASRNSFWGELPQHVMSGISRMVPTLIMGGVILAFSQLIAYSWLKIPADTGIMDALNSGKFDGFNLSLLKFAWLSQSFGGVLFGFAIPMFAAFVANSIGGKLAFPAGFIGGLMSTQPTQILNFDPASLQWVTTAPVPSTFIGALIISIVAGYLVKWMNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITPFGGWINGGIRTLLTAAGEKGTLMYAMGISAATAIDLGGPINKAAGFVAFSFTTDHVLPVTARSIAIVIPPIGLGLATILDRRLTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFALESPITAIPSYMVGAIVGSTTAVWLGAVQWFPESAIWAWPLVSNLGVYMAGIVLGAVITALMVVFLRHMMYRRGKLLIESL
>NC_009792.1|WP_024130140.1|388932_389259_+|PTS-fructose-transporter-subunit-IIB
MAKKLIAVCACPMGLAHTFMAAQALEEAAVEAGYEVKIETLGADGIQNRLTAQDIAEATLIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEMIAAEQQ
>NC_009792.1|WP_012131396.1|387728_388694_+|glucokinase
MTKYALVGDVGGTNARLALCDMTSGEISQAKTYSGLDYPSLEAVVRVYLDEHNARVEDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLRKEHLIQFGGAEPVAGKPIAVYGAGTGLGVAHLVHVDKRWISLPGEGGHVDFAPNSEEEGIILEELRAEIGHVSAERVLSGPGLVNLYRAIVKSDGRLPENLQPKDITERALADTCIDSRRALSLFCVIMGRFGGNLALTLGTFGGVYIAGGIVPRFLEFFKASGFRGGFEDKGRFKAYVQDIPVYLIVHDNPGLLGSGAHLRQTLGQIL
>NC_009792.1|WP_024130139.1|386288_387524_-|ion-channel-protein
MLHPRARTMLLLSLPALIIGIASSLVLIAVMKVASVLQRLLWEQIPVGLGIAHDSPVWIIGMLTFTGIMVGLVIRYSPGHAGPDPATEPLIGAPMNPVALPGLLIALILGLAGGVSLGPEHPIMAVNIALAVAIGARLFPRIGALDWTILASAGTIGALFGTPVAAALIFSQTLNSSDDTPLWDRLFAPLMAAAAGSLTTSLFFHPHFSLPIAHYTQMRLSDIFSGAVVAAIAIAAGMVAVWCLPRLHSLVHRLKNPVLILGIGGFMLGILGVLGGPLTLFKGLDEMQQLAFSQTLGATDYFMLAIVKLGALVIAAACGFRGGRIFPAVFVGVALGLMLHAHVEAVPAAITVSCAILGLMLVVTRDGWLSLFMAAVVVPDTTLLPLLCIVMLPAWLLLAGKPMMAVNRHDR
>NC_009792.1|WP_012131393.1|384619_386275_+|indolepyruvate-decarboxylase
MQTPYSVADYLLDRLAGCGIGHLFGVPGDYNLQFLDHVIAHRDVCWVGCANELNAAYAADGYARLAGAGALLTTFGVGELSALNGLAGSYAEYVPVLHIVGAPCSGAQRRGELMHHTLGDGDFQHFYRISQAVTAASAVLNEQNACYEIDRVLRGMLTMRRPGYLMLPADVAKRPAVPPVNVLTPDRAEGENDTVAAFRYRARQRLMNSPRVALLADFLALRFGLQPVLQRWMAETPIAHATLLMGKGLFDEQHPNFVGTYSAGASSESVRQAIEEADTVICVGTRFVDTLTAGFTQQLPQERTIEIQPHASRVGNSWFSGLSMEQAVTTLRELCLELSFSPPPTPAHAPGGHIEKGTLTQENFWHTVQAYLLPGDIILADQGTAAFGAADLSLPAGADVLVQPLWGSIGYALPAAFGAQTACPERRVILITGDGAAQLTIQELGSMMRDGQSPVILLLNNDGYTVERAIHGANQRYNDIAGWNWTQVPQALSANCQAECWRVTQAIQLEEVLARLKSPQRLSLIEVVLPKADLPELLRTVTRALESRNGE
>NC_009792.1|WP_012131391.1|383438_384437_-|L-glyceraldehyde-3-phosphate-reductase
MVYRADKNRYQTMEYRRCGQSGLKLPAISLGLWHNFGDTTQVENSRALLQRAFDLGITHFDLANNYGPPPGSAERHFGRILQEDFLPWRDELIISTKAGYTMWDGPYGDWGSRKYLIASLDQSLKRLGLEYVDIFYHHRPDPETPLKETMKALDHIVRQGKALYVGISNYPADLARQAIEILDDLGTPCLIHQPKYSMFERWVEDGLLALLQEKGVGSIAFSPLAGGQLTDRYLNGIPADSRAASGSRFLNPDQITPEKLEKVRQLNALAGRRGQKLSQMALAWVLRDDKVTSVLIGASKTAQIEDAVGMLANRHFSPAECAEINAILNGSQ
>NC_009792.1|WP_024130138.1|382993_383314_-|DUF2502-domain-containing-protein
MFRSLILAAALLAFTPLAANAGEITLLPSIKLQIGDRDNYGNYWDGRYWRDRDYWHHHYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDHHPGRGHGHRH
>NC_009792.1|WP_012131403.1|396278_397013_-|two-component-system-response-regulator-YpdB
MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQHNRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKPYQESRIVGMLQKLEAAWQQQQVVAVPGSPVARENDTINLIKDERIIVTPINDIYYAEAHEKMTFVYTRRESYVMPMNITEFCSKLPASHFFRCHRSFCVNLNKIREIEPWFNNTYILRLKDLEFEIPVSRSKVKEFRQLMHL
>NC_009792.1|WP_024130142.1|397027_398725_-|two-component-system-sensor-histidine-kinase-YpdA
MHEIFNMLLAVFDRAALMLFCLFFLIRIRLFRELLHKSAHSPKELLAVTAIFSMFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRYLIDIGGVTAVPCFITSILAGCIAGWINRKIPKAQHWRVGILGGMLCETLTMILVIVWAPTIALGVDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLPLFRQVNSESLRQVCEIIRHDIHADAVAITNTEHVLAYVGVGETNYRNNDDFVSPTTQQAINYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAIGLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTARQLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNCYIPNLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERMKANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYVPNQRSPAAAPATLLL
>NC_009792.1|WP_012131405.1|399114_400353_+|alanine-transaminase
MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRRAISRWYQERYDVDIDPETEAIVTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNQTLVSALSRIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEQYAAMGSLEFAKKLLNDAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKTMFRADGLLPAGAKSVTEGTE
>NC_009792.1|WP_010723117.1|400404_400476_-|membrane-protein-YpdK
MKYFFMGISFMVIVWAGTFALMI
>NC_009792.1|WP_012131406.1|400855_401776_-|kdo(2)-lipid-IV(A)-palmitoleoyltransferase
MFPQCKFSRALLHPRYWLTWFGLTVLWLLVLLPYPVLRFLGTRTGRLARPFLKRRESIARKNLELCFPNLTPEEREKMIVENFHSLGMALIETGMAWFWPDKRVRKWFDVDGLDNLTQAQAQKRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNSLMEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVKDVATTNGTYVLSRLSGAAMLTVTMIRKGDNSGYRLYITPEMEGYPEEENQAAAYMNKIIEKEIMRAPEQYLWIHRRFKTRPLGEASLYV
>NC_009792.1|WP_012131410.1|402694_409654_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MNKVFKVIWNSRLNIFVVASELARGYCKSTAGNTSFGSLLKYPLMSALAVSISCILTTGTFAADLQVYDFSPQDPFEEIISGSTHLTGGFSGIQRGETGYTWTTLGQAREDGLITGDSGQWVDKDIFRMGSQTKSINYTDPVTGSTVTMKVYDNNDMQTEAAKDFRVVVSQPVGKDGQYVDRNLYQVGAGASLDVDVGQKTGNWVGAADNQFNVIMKSSVNTQNLSSAYHVTNGGSLNYQSKTVVQLGNSDNNIKDASNALAWMTAADFVGEFDSVIGKQNITNIDEFKAYNDALIQALQDGQIQLTEAQYADELNKARDTSLHGIFADTGSIAADDAIRAFVNRDAVSYIHGVGSGTNVVIDKDANIQLVGSDATVVNLENGARLTNNGTLGTAGNTYRGAYIIAARNTSFVDNNGVIDAGTNPEMADFFSSGAAGVAQGAHTAILANGSSVINNNSSGVINVAARGNYYGNTGVLMSGNATLNNDGAINIAASNEANSILGNGANIGVVTQQNTTFNNRGTLYIGRLAQRAPDDANTDIAIKQQSIGVHLYGNGTYNGSDTSQIIIGSKVQNATAIDVGGNATLDQKGSININGAVTGESVSSNIGIIARAGTQAAKVVHDGIINLNGLNSTGIQVLENGQITSSGTININGGLDPVTHYANYGIYVQGEKALAILSGTVNLSGDGAIGVHARDKGEIDVTENGTVNFKDGVNQTGYYIFGAGSTIKNAASSVQDASTQNATLYRVDGGASFYGSADSSAQLNASGDGATIIRTTGAGSHFDSGKLALSVTGTGATGIRIEGGATGEITSDAVIVRVAGKDTTAGIVDGNYYNLDGSVNDAQKGDSVLTSYAVLETANTADGAFGYIARNGGRLIHEGSIDFTADNSTGILVDGGILENHSDVTVNGVAVNIQGANSEVTNSGVVTATDGQAAYLVGNNATLALNGNGETRAAGTAHGILLDTGAKGLTVDGATITMDSAGSGNAIENKAAISGIQLKNTTINVGNGVGVHTGASMAQTNSGTININGSGTGILFENVADGSDTDQTLDMSDSRDLVINVNGAQGNGIITRASTDLKTGASVNVLDSDGKSALVVQGTTKNVEQSGKLISVSDKAAVVDLNNGVLESFINKGDILALDASHTALEMNSGNGITFTNASGANIVGQVNLLNGDNTVILESGSTATDITSGSGKDNFILKNIRENESGSLFTSLNGGSGDDTLQLENSSYTLTRADAINGMEHIALANNSVFTLDNVALGLGDDELDGAGTGYTIDGSSQLSIKNTADVTFKSHLAGTGVVAVDTANNHFNFDANNAADGFAGTLALTNSRFELDGLNSQALSNATLQAGNGSITHVGSGEQNIGGLDFKGGTVQFDGVTPGNPTALGTIHAGAMDLSGRGTVQVDSGTVSNDRPQADTHRPILEQDDAQALIKLATSDTAVQGGAGNLVLKDKDGNVISDSITADIAQNGAVVAKGTYDYRLTGGDSDDGLYVSYGLTQVDLLGKDADALILDANGKSGNAADLSARVTGSGDLAFDSQKGQTVTLSNMDNDYSGVTDVRSGNLAMLNDNVLGNTRELKLAGDTGFDMRGHSQTIGKLTAESGSLTDLNGGHLTLTNGGEASGVLTGDGELTVAGGTLNVSGANTGLKATTTIAQGATAVLDNTLGLGTGDIVAAGLLNLSNATGVLYNSISDAGKVALDASDVVLAGNNSHFAGTFDIDNDSTLTASSAQQLGTSAIQNAGKFVLNTHESWSLENGVTGSGSVVKNGSGNVTLSDSAQWTGATDINAGGLTLGSADNAFTLASHQVNIGKDGRLSGFGGVAGNMANQGTLLIGDDVSAARRAASSPVSFTVGGNLTNSGDIWTGSKGKDAGNQLVVNGNYQGDGGHLHLNTALNDDNSVTDKLIVKGNTSGTTGVSVTNAGGSGAQTINGIEVIHVDGQSDGEFTQDGRIVAGAYDYSLARGQGDNNGNWYLTSHKTDPNPGPGPKPEPDIRPEPGSWTANLAAANTLFVTRLHDRLGETQYIDALTGEKKVTSMWMRQAGGHNAWRDSSGQLKTQSNRYVMQVGGDVARWSGDGLDRWHLGVMAGYGHNSSNTRSSSTGYRSDGSVNGYSAGVYATWYANDETHQGAYLDSWAQYSWFNNSVKGQDIQSESYKSKGITGSLELGYTHKLGEFAGSKGSKNEWFIQPQAQAIWMGVEADDHRESNGTRISGEGDGNVQTRLGVRTFLKGHSAIDEGKAREFQPFVEVNWLHNTRDFGTKMDGVSIRQEGARNLGEIKTGVEGQINQQLNVWGNVGVQLGDKGYNDTSAMIGIKYNFK
>NC_009792.1|WP_012131411.1|409751_410333_+|response-regulator-transcription-factor
MIVISENSFFHLGVSALVERMALNTTRNLIVFDTGRDCLYMLDTEEAKMPFFHEPILIFSHCRRIYLTEKNRKFKIETLLSKTKSHPAVRRKREVLTVSELRVIKKVCQGISQRRIAEQFKVSEKTISNQKMNALRKLSINKTTKFFVEYLAWLRLWHEYVEYKNNQMRKPVKLSVITPETFTKRQSEVLIEV
>NC_009792.1|WP_012131412.1|410395_411907_+|EAL-domain-containing-protein
MKQHAGGLVGNKLVFVIVFLTITITGMVTFWLGASSRVDNDKRALIQRVDSLLFEAKQISDSLTAHLTERCSDETVRMLTKQIHRYPHIGGIFLLQDSQVYCSSGMARPELSNLTAGENGNRLFLVDETPAFRGEPVLAYVTVRGNNAIVVTISTYWFKSLLADSRLLVNVNGNILSDDKLISTNSIDFQNSAWQQSNMFDYQVMEYPEHTGIASVLNFIFILFLSAAIAVPAAFLFNYTLQRIAMSRYIQLRRGLRKQQFVPYYEPVMNCASGALYGAEVVMRWKKGNDTSVINEEIISLANKTGMISPLVNFILRQVEKDILSLRLRLPRTFYINFRLSESMIAMPELIDSFVEFQKRLPSDVKLTLEFPEVVYRDTTLEFDSVLRRLRVEGIKIKMSSLFLERLNADRNLYLPVDAVRIEKSITGLISDSKEPVASVDDIIRSAVNKNYTIIADGIENDQQYHYLSLRGVVLQQGNYWSMPLSSFHLMQYIIQSDKVLLC
>NC_009792.1|WP_012131413.1|412097_412532_-|DoxX-family-protein
MTFSQRLTHAVRPLIGAAVCRWLAYLGLCAAYLQGGINKLLDFQGAIGEMNHFGLSPAPLFAALVIALELGASIMILTGCLRWLASLALAGFTLVATFLALRFWELPAGMERFSTANAFFEHLGLVGGFLLVAWLDVQKKMADE
>NC_009792.1|WP_012131414.1|412546_414442_-|amidohydrolase
MTQHVVADVILHHGLFTTLDKSNPTASAVAVKDGKFLAVGGDAEIMAFAGPATKVVDLKGKRVLPGLIDNHTHVVRGGLNYNMELRWDGVRSLADAMDMLRRQVAITPAPQWVRVVGGFTEHQFVEKRLPTIEEINAIAPDTPVFLLHLYDRALLNAAALRAVGYTKETPEPPGGEITRDAKGNPTGLLLARPNAGILYATLAKGPKLPFDYQVNSTRHFMRELNRLGVTGVIDAGGGFQNYPDDYAVIQKLADENLMTVRLAYNLFTQKPQEEKEDFLNWTRSVTYKQGNDYFRHNGAGEMLVFSAADFEDFRQPRPDMPPEMEGELEEVVRILAENRWPWRLHATYDETISRALDVFEKVNQDIPLEGINWFFDHAETISERSIDRIAALGGGIAVQHRMAYQGEYFVERYGAGAAEATPPIARMLEKGVKVSAGTDATRVASYNPWVSLAWMITGKTVGGMQLYPRRNCLDRETALRMWTENVTWFSNEEGKKGRIQAGQFADLIVPDKDFFACAEDEISFLSSELTMVGGKIVWGAGPFESLDDNPVPPAMPDWSPTRTFKGYAAWGEPEGAGKNSLAVRQMAMASCGCSHGCGLHGHDHAGAWTSSLPVSDLKGFFGALGCSCWAV

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Crispr_ID: NC_009792_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009792_2

454477-454573

Orphan

Consensus_repeat	Method
AGGCCGGATAAGGTGCTTGCCCGCCATCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009792_2

>merge|NC_009792|2|454477-454573|CRISPRCasFinder
AGGCCGGATAAGGTGCTTGCCCGCCATCCGCGCGGAGTTCAGCCAGGCCTACGGTGTACTGTTTTGTAGGCCGGATAAGGTGCTTGCACCGCCATCC

>NC_009792|2|2|454477-454573|CRISPRCasFinder
AGGCCGGATAAGGTGCTTGCCCGCCATCCG	CGCGGAGTTCAGCCAGGCCTACGGTGTACTGTTTTGT
AGGCCGGATAAGGTGCTTGCACCGCCATCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009792.1\|WP_024130151.1\|462003_462516_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NC_009792.1\|WP_012131453.1\|451490_452405_+\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NC_009792.1\|WP_012131461.1\|458757_459540_+\|histidine-ABC-transporter-substrate-binding-protein-HisJ	unknown	unknown	gnl\|CDD\|185334
NC_009792.1\|WP_012131460.1\|457727_458510_+\|lysine/arginine/ornithine-ABC-transporter-substrate-binding-protein-ArgT	unknown	unknown	gnl\|CDD\|184972
NC_009792.1\|WP_012131447.1\|445352_446531_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|183487
NC_009792.1\|WP_012131462.1\|459725_460412_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|185089
NC_009792.1\|WP_012131463.1\|460408_461125_+\|histidine-ABC-transporter-permease-HisM	unknown	unknown	gnl\|CDD\|185029
NC_009792.1\|WP_012131454.1\|452474_453743_+\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|182774
NC_009792.1\|WP_012131451.1\|449842_450655_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NC_009792.1\|WP_012131450.1\|448829_449843_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|181205
NC_009792.1\|WP_012131452.1\|450678_451338_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|182775
NC_009792.1\|WP_024130150.1\|446527_447529_-\|flagella-biosynthesis-regulator-Flk	unknown	unknown	gnl\|CDD\|182670
NC_009792.1\|WP_012131446.1\|444586_445111_-\|YbjP/YqhG-family-protein	unknown	unknown	gnl\|CDD\|372360
NC_009792.1\|WP_012131449.1\|447631_448768_+\|4-phosphoerythronate-dehydrogenase-PdxB	unknown	unknown	gnl\|CDD\|185335
NC_009792.1\|WP_012131457.1\|455254_456772_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NC_009792.1\|WP_012131456.1\|454730_455219_+\|colicin-V-production-protein	unknown	unknown	gnl\|CDD\|182773
NC_009792.1\|WP_012131466.1\|462586_463480_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NC_009792.1\|WP_012131458.1\|456869_457439_+\|flavin-prenyltransferase-UbiX	unknown	unknown	gnl\|CDD\|235677
NC_009792.1\|WP_012131455.1\|453732_454416_+\|cell-division-protein-DedD	unknown	unknown	gnl\|CDD\|236940
NC_009792.1\|WP_012131464.1\|461132_461906_+\|histidine-ABC-transporter-ATP-binding-protein-HisP	unknown	unknown	gnl\|CDD\|182592

Protein	Function_ID	Function_description	E-value
NC_009792.1\|WP_024130151.1\|462003_462516_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	7.46616e-29
NC_009792.1\|WP_012131453.1\|451490_452405_+\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NC_009792.1\|WP_012131461.1\|458757_459540_+\|histidine-ABC-transporter-substrate-binding-protein-HisJ	gnl\|CDD\|185334	PRK15437, PRK15437, histidine ABC transporter substrate-binding protein HisJ; Provisional.	0
NC_009792.1\|WP_012131460.1\|457727_458510_+\|lysine/arginine/ornithine-ABC-transporter-substrate-binding-protein-ArgT	gnl\|CDD\|184972	PRK15010, PRK15010, lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT.	4.72551e-173
NC_009792.1\|WP_012131447.1\|445352_446531_+\|MFS-transporter	gnl\|CDD\|183487	PRK12382, PRK12382, putative transporter; Provisional.	0
NC_009792.1\|WP_012131462.1\|459725_460412_+\|ABC-transporter-permease-subunit	gnl\|CDD\|185089	PRK15135, PRK15135, histidine ABC transporter permease HisQ.	1.31259e-150
NC_009792.1\|WP_012131463.1\|460408_461125_+\|histidine-ABC-transporter-permease-HisM	gnl\|CDD\|185029	PRK15069, PRK15069, histidine ABC transporter permease HisM.	2.12539e-163
NC_009792.1\|WP_012131454.1\|452474_453743_+\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|182774	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional.	0
NC_009792.1\|WP_012131451.1\|449842_450655_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.16519e-147
NC_009792.1\|WP_012131450.1\|448829_449843_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|181205	PRK08040, PRK08040, putative semialdehyde dehydrogenase; Provisional.	0
NC_009792.1\|WP_012131452.1\|450678_451338_+\|DedA-family-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	3.92469e-155
NC_009792.1\|WP_024130150.1\|446527_447529_-\|flagella-biosynthesis-regulator-Flk	gnl\|CDD\|182670	PRK10715, flk, flagella biosynthesis regulator Flk.	5.55519e-175
NC_009792.1\|WP_012131446.1\|444586_445111_-\|YbjP/YqhG-family-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	7.03594e-47
NC_009792.1\|WP_012131449.1\|447631_448768_+\|4-phosphoerythronate-dehydrogenase-PdxB	gnl\|CDD\|185335	PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional.	0
NC_009792.1\|WP_012131457.1\|455254_456772_+\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NC_009792.1\|WP_012131456.1\|454730_455219_+\|colicin-V-production-protein	gnl\|CDD\|182773	PRK10845, PRK10845, colicin V production protein; Provisional.	1.42468e-103
NC_009792.1\|WP_012131466.1\|462586_463480_-\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	1.39594e-173
NC_009792.1\|WP_012131458.1\|456869_457439_+\|flavin-prenyltransferase-UbiX	gnl\|CDD\|235677	PRK06029, PRK06029, UbiX family flavin prenyltransferase.	1.28597e-126
NC_009792.1\|WP_012131455.1\|453732_454416_+\|cell-division-protein-DedD	gnl\|CDD\|236940	PRK11633, PRK11633, cell division protein DedD; Provisional.	2.23832e-128
NC_009792.1\|WP_012131464.1\|461132_461906_+\|histidine-ABC-transporter-ATP-binding-protein-HisP	gnl\|CDD\|182592	PRK10619, PRK10619, histidine ABC transporter ATP-binding protein HisP.	0

>NC_009792.1|WP_012131455.1|453732_454416_+|cell-division-protein-DedD
MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLVPKPGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPSRFAAENNASFDPVPAPVEPPKPKPVEKPKPQPKPQQPVAATPTPAPEPKPAAEEKPAPTGKAYVVQLGALKNADKVNEIVGKLRGAGFRVYTSPSTPVQGKITRILVGPDASRDKLKNSLGELQQISGLSGVVMGYSPN
>NC_009792.1|WP_012131454.1|452474_453743_+|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MDNKRIPQAASPLAAWLSYLENLHSKTIDLGLERVSRVAARLGVLKPAPFVFTVAGTNGKGTTCRTLESVLTAAGYKVGVYSSPHLVRYTERVRVQGNELPESAHTASFAEIEAAREDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVDADVAVVTSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPYTIADVAQETGAQLQRRGVDWHYDVTGDGWSFTDGEGTLANLPLPQVPQPNAATALAALRASGLNISEQAIRDGIARAILPGRFQIVSESPRVILDVAHNPHAAEYLTERLKMLPKNGRILAVIGMLHDKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGTVYDSVALAWHAALAEAKPEDTVLVCGSFHTVAHVMEVMDAGRSGGE
>NC_009792.1|WP_012131453.1|451490_452405_+|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta
MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLEVCPKCDHHMRMSARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKETGEKDALVVMKGTLHDMPIVAAAFEFSFMGGSMGSVVGARFVRAVEQALEDNCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNIAEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASVLAKLMNLPAPNPDAPREGEVVPPVPDQEPEA
>NC_009792.1|WP_012131452.1|450678_451338_+|DedA-family-protein
MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLVVTPFLPGDSLLFVAGALASLETNDLNVHIMVMLMLIAAIVGDAVNYTIGRLFGERLFSNPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYNVIGALLWVLLFTYAGYFFGTIPMIQDNLKLLIVGIIVVSILPGVVEIIRHKRAASRAAK
>NC_009792.1|WP_012131451.1|449842_450655_+|tRNA-pseudouridine(38-40)-synthase-TruA
MSAVEQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPVNVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKAVPEDFHARFSATARRYRYIIYNHRLRPAILGHGVTHFYEPLDAERMHRAAQCLIGENDFTSFRAVQCQSRTPWRNVMHINVTRHGAYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRRLSAATAKAEGLYLVAVDYPERFDLPKTPLGPLFLAD
>NC_009792.1|WP_012131450.1|448829_449843_+|aspartate-semialdehyde-dehydrogenase
MSEGWNIAILGATGAVGEALLETLAERQFPVGEIYALARNESAGEHLRYSGKSVIVQDVADFDWTQAQLAFFVAGAEASAAWVEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPSVLADYRNRNVIAVANSLTSQLLASLKPLIDEGGLSRISVTSLLSASAHGKKAVDALAGQSAKLLNGIPIDEDDFFGRQLAFNMLPLLPDSEGSVREERRIVDEVRKILQDDGLMISASCIQSPVFYGHAQMVSFEALRPLAAEEARDAFSRGEDIVLSEETDFPTQVGDASGNPQLSVGCVRNDYGMPEQVQFWSVADNVRFGGALMAVKTAEKLVQEYLY
>NC_009792.1|WP_012131449.1|447631_448768_+|4-phosphoerythronate-dehydrogenase-PdxB
MKILVDENMPYARELFSRLGEVKAVPGRPIPVAELDDADALMVRSVTKVNEALLGGKSIKFVGTATAGTDHVDEAWLKQAGVGFSAAPGCNAIAVVEYVFSALLMLAERDGFALSDRTVGIVGVGNVGARLQARLEALGIRTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLYKEGPYKTLHLADEALIGRLKPGTILINACRGPVVDNTALLARLNAGQSLSVVLDVWEGEPDLNVALLEKIDIGTSHIAGYTLEGKARGTTQVFEAYSTFIGRAQKVALDTLLPAPEFGRITLHGPLDQPTLKRLAHLVYDVRRDDAPLRKVAGIPGEFDKLRKNYLERREWSSLYVMCDDASAATLLHKLGFNAVHHPAH
>NC_009792.1|WP_024130150.1|446527_447529_-|flagella-biosynthesis-regulator-Flk
MQPISGTPARPPGEGQTAPSVAGEQPLSTQQRTVLERLITRLISLTQQQSAEVWAGMKHDLGVKSDTPLLSRHFPAAEQNLTQRLSVAQQNHANRQVLSQLTELLSQGNNRQAVSDFIRQQYGQTALSQLTPEQLKNVLTLLQQGQLSIPQPQQRPPTDRPLLPAEHNTLNQLVTKLAAATGESGKLIWQSMLELSGVKSGELIPAKQFTHLVTWLQARQTLSNQSAPTLQTLQAALKLPLEPNEFTALRDYAQQTYQALPHTILTTAQVQDLLNQIFLRRVARERELTEPHHIQPIYSPFAPMIETIKSVTARPGLIFIALAVAFILFWLVS
>NC_009792.1|WP_012131447.1|445352_446531_+|MFS-transporter
MTAVSQKEKTPSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHELGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACALAGGAWLLAALLPVSVPVKFALLIVGRLILGFGESQLLTGTLTWGMGLVGPSRSGKVMSWNGMAIYGALAAGAPLGLLIHSHYGFAALAGTTMALPLLAWAFNGTVRKVPAHAGERPSLWSVVGLIWKPGLGLALQGVGFAVIGTFISLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAVASLLVETAGLVLLWLAPVAWIALLGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDISYGVTGPLAGLLATSCGYSSVFLAGAISAVVGIVVTLLSFRRG
>NC_009792.1|WP_012131446.1|444586_445111_-|YbjP/YqhG-family-protein
MKAFPLITLILLLCGCATPHRDSTQDINQFYLSWMKTFTEDQDTPHDKSALMQRYVAKELINRLTLIDNLYEQEIVASDYFMYVQDYAPEWIAKFHAGTASAFLGGEKVDVWLGDSDTRLIHLMVYTRRENGQWKIYRVRDLTHQFEHPIYDAGAIARARAWSAKVAQEYENKQ
>NC_009792.1|WP_012131456.1|454730_455219_+|colicin-V-production-protein
MVWIDYAIIAVIGFSCLVSLIRGFVREALSLVTWGCAFFVASHYYTYLSVWFTGFEDELVRNGIAIAILFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGICFGALRGALIVAAILFFLDTFTGLSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLPRT
>NC_009792.1|WP_012131457.1|455254_456772_+|amidophosphoribosyltransferase
MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRMQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAATNRQIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIGDGRTEYMVASESVALDTLGFEFLRDVAPGEAVYITEKGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSARVNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRTFIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNVYGIDMPTANELIAHGREVDEIRQIIGADGLIFQDLDDLIEAVRAENPDIQQFECSVFNGVYVTKDVDQQYLDYLDSLRNDDVKAMQRQNEVENLEMHNEG
>NC_009792.1|WP_012131458.1|456869_457439_+|flavin-prenyltransferase-UbiX
MKRLIVGISGASGAIYGVRLLQVLRDVADVETHLVMSPAARQTLALETEFSLREVQALADVTHDARDIAASISSGSFQTAGMVILPCSIKTLSGIVHSYTDGLLTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHCPQTLDDVINQTVNRVLDQFDITLPHDLFTRWQGA
>NC_009792.1|WP_012131460.1|457727_458510_+|lysine/arginine/ornithine-ABC-transporter-substrate-binding-protein-ArgT
MKKTVLALSLLVGLSATAASYAALPQTVRIGTDATYAPFSSKDAKGDFVGFDIDLGNEMCKRMQIKCTWVGSDFDALIPSLKAKKIDAIISSLSITEKRQQEIAFSDKLYAADSRLIAAKGSSVQPTIDSLKGKHVGVLQGSTQEAYANDNWRSKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKDYAFAGPSVKDKKYFGDGTGVGLRKDDTELKAAFDKALSDLRADGTYDKMAKKYFDFNVYGD
>NC_009792.1|WP_012131461.1|458757_459540_+|histidine-ABC-transporter-substrate-binding-protein-HisJ
MKKLVLSLSLVLAFSSATAAFAAIPQKVRIGTDPTYAPFESKNAQGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKFYAADSRLVVAKDSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG
>NC_009792.1|WP_012131462.1|459725_460412_+|ABC-transporter-permease-subunit
MLYGFSGVIFQGALVTLELALSSVVLAVLIGLVGAGAKLSQNRVTGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNAVTDAMGIGQIDIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTGSQIFRRIMFPAMMRYALPGIGNNWQVILKATALVSLLGLEDVVKATQLAGKSTWEPFYFAVVCGLIYLVFTTVSNGVLLFLERRYSVGVKRADL
>NC_009792.1|WP_012131463.1|460408_461125_+|histidine-ABC-transporter-permease-HisM
MIEIIQEYWKSLLWSDGYRFTGVAITLWLLISSVVMGGILALFLAIGRVSSNKFIQFPIWLFTYVFRGTPLYVQLLVFYSGMYTLEIVKGTDLLNAFFRSGLNCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIALPAYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLIISYVLISLFRKAEKRWLQHVKPSSTH
>NC_009792.1|WP_012131464.1|461132_461906_+|histidine-ABC-transporter-ATP-binding-protein-HisP
MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVSGQNISLVRDNDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSTHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK
>NC_009792.1|WP_024130151.1|462003_462516_-|GNAT-family-N-acetyltransferase
MAIITTSRLTLSLFQPTDWSFFLALRENPDIMRYMADITPEKDTRLLFARRLVSKHTFVIRLHNSDKPLGDIGLQISHHYPQEADIGYTVLPEAQGRGIATEALYAVCDYAFTHTSVKAINAYVLAENHASVRVLEKRGFTRTQVLENAYEVNGIRYDEWVYRLESEMGR
>NC_009792.1|WP_012131466.1|462586_463480_-|TIGR01777-family-protein
MQILITGGTGLIGRHLIPRLLALGHQVTVVTRSPDKARQLLDSRVALWKGLEDRQNLNDIDAVVNLAGEPIADKRWTAQQKERLCQSRWSITQKLADLINASETPPAALISGSAAGYYGDLGEVVVTEEEPPHNEFTHKLCARWEQIACSAQSDKTRVCLLRTGVVLAPEGGILAKMIPPFRLGLGGPIGNGRQYLAWIHIDDMVNGILWLLDNDLRGPFNMVSPYPVRNEQFAHALGHALNRPAILRVPATVIRLLMGESSVLVLGGQRALPKRLEAAGFSFRWYDLEEALADVIR

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Crispr_ID: NC_009792_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009792_3

1284639-1284722

Orphan

Consensus_repeat	Method
CTGTAGGCCGGATAAGGCGCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009792_3

>merge|NC_009792|3|1284639-1284722|CRISPRCasFinder
CTGTAGGCCGGATAAGGCGCTTGTGTCGCCATCCGGCGACCCCTACAACATTACGCAGAACCTGTAGGCCTGATAAGGCGCTTG

>NC_009792|3|3|1284639-1284722|CRISPRCasFinder
CTGTAGGCCGGATAAGGCGCTTG	TGTCGCCATCCGGCGACCCCTACAACATTACGCAGAAC
CTGTAGGCCTGATAAGGCGCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009792.1\|WP_012132187.1\|1276713_1277391_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
NC_009792.1\|WP_012132200.1\|1289363_1290995_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	unknown	unknown	gnl\|CDD\|185059
NC_009792.1\|WP_012132197.1\|1284009_1284627_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NC_009792.1\|WP_012132202.1\|1292053_1292962_+\|oligopeptide-ABC-transporter-permease-OppC	unknown	unknown	gnl\|CDD\|185304
NC_009792.1\|WP_012132205.1\|1295052_1295382_-\|YciU-family-protein	unknown	unknown	gnl\|CDD\|179934
NC_009792.1\|WP_012132207.1\|1297019_1297193_+\|YciY-family-protein	unknown	unknown	unknown
NC_009792.1\|WP_012132186.1\|1276003_1276714_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014
NC_009792.1\|WP_012132203.1\|1292973_1293987_+\|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppD	unknown	unknown	gnl\|CDD\|181888
NC_009792.1\|WP_012132206.1\|1295416_1296877_-\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967
NC_009792.1\|WP_012132190.1\|1278345_1279188_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NC_009792.1\|WP_012132204.1\|1293983_1294988_+\|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF	unknown	unknown	gnl\|CDD\|185037
NC_009792.1\|WP_012132196.1\|1283054_1283468_-\|DNA-binding-transcriptional-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858
NC_009792.1\|WP_012132192.1\|1279807_1280713_+\|patatin-like-phospholipase-RssA	unknown	unknown	gnl\|CDD\|182352
NC_009792.1\|WP_012132198.1\|1284791_1287467_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
NC_009792.1\|WP_012132193.1\|1280803_1281817_+\|two-component-system-response-regulator-RssB	unknown	unknown	gnl\|CDD\|182652
NC_009792.1\|WP_024130298.1\|1287944_1288592_+\|YchE-family-NAAT-transporter	unknown	unknown	gnl\|CDD\|236850
NC_009792.1\|WP_012132185.1\|1274471_1276007_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NC_009792.1\|WP_047464045.1\|1279240_1279696_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|234966
NC_009792.1\|WP_012132194.1\|1282018_1282927_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
NC_009792.1\|WP_012132201.1\|1291118_1292039_+\|oligopeptide-ABC-transporter-permease-OppB	unknown	unknown	gnl\|CDD\|181886

Protein	Function_ID	Function_description	E-value
NC_009792.1\|WP_012132187.1\|1276713_1277391_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	1.45036e-132
NC_009792.1\|WP_012132200.1\|1289363_1290995_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NC_009792.1\|WP_012132197.1\|1284009_1284627_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	9.69554e-118
NC_009792.1\|WP_012132202.1\|1292053_1292962_+\|oligopeptide-ABC-transporter-permease-OppC	gnl\|CDD\|185304	PRK15406, PRK15406, oligopeptide ABC transporter permease OppC; Provisional.	0
NC_009792.1\|WP_012132205.1\|1295052_1295382_-\|YciU-family-protein	gnl\|CDD\|179934	PRK05094, PRK05094, dsDNA-mimic protein; Reviewed.	9.33651e-60
NC_009792.1\|WP_012132186.1\|1276003_1276714_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	1.81443e-88
NC_009792.1\|WP_012132203.1\|1292973_1293987_+\|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppD	gnl\|CDD\|181888	PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional.	0
NC_009792.1\|WP_012132206.1\|1295416_1296877_-\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	0
NC_009792.1\|WP_012132190.1\|1278345_1279188_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	8.94429e-177
NC_009792.1\|WP_012132204.1\|1293983_1294988_+\|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF	gnl\|CDD\|185037	PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional.	0
NC_009792.1\|WP_012132196.1\|1283054_1283468_-\|DNA-binding-transcriptional-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	2.00904e-79
NC_009792.1\|WP_012132192.1\|1279807_1280713_+\|patatin-like-phospholipase-RssA	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
NC_009792.1\|WP_012132198.1\|1284791_1287467_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
NC_009792.1\|WP_012132193.1\|1280803_1281817_+\|two-component-system-response-regulator-RssB	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0
NC_009792.1\|WP_024130298.1\|1287944_1288592_+\|YchE-family-NAAT-transporter	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	8.02566e-138
NC_009792.1\|WP_012132185.1\|1274471_1276007_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NC_009792.1\|WP_047464045.1\|1279240_1279696_-\|YchJ-family-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	2.44271e-105
NC_009792.1\|WP_012132194.1\|1282018_1282927_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
NC_009792.1\|WP_012132201.1\|1291118_1292039_+\|oligopeptide-ABC-transporter-permease-OppB	gnl\|CDD\|181886	PRK09471, oppB, oligopeptide ABC transporter permease OppB.	0

>NC_009792.1|WP_012132197.1|1284009_1284627_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRFGAGKVSSRIGLSSPAKLFNQNSSLFEEIRTENAQQTIHCVLVDECQFLTRQQVYELSEVVDQLDIPVLCYGLRTDFRGELFGGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQAGRPYNEGEQVVIGGNERYVSVCRKHYKEALAEGSLTSIQEKHRHA
>NC_009792.1|WP_012132196.1|1283054_1283468_-|DNA-binding-transcriptional-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAVKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLDDFLIKG
>NC_009792.1|WP_012132194.1|1282018_1282927_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MAALNSKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGNEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGCSQIMVEPVEDVTAYGVVDCKGAALAPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNSLGAEFKAWLEDELGIKK
>NC_009792.1|WP_012132193.1|1280803_1281817_+|two-component-system-response-regulator-RssB
MTQPLVGKQILIVEDEPVFRSLLDSWFSSLGATTALAGDGLDALELLGSFTPDLMICDLAMPRMNGLKLVEHLRNRGDQTPILVISATENMADIAKALRLGVEDVLLKPVKDLNRLRETVFACLYPNMFNSRVEEEERLFRDWDAMVDNPVAAAKLLQELQPPVQQVISHCRINYRQLVAADKPGLVLDIAPLSDNDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNATLNTGSHQVQISNGVPLGTLGNTYLNQLSQRCESWQCQIWGAGGRLRLMLSAE
>NC_009792.1|WP_012132192.1|1279807_1280713_+|patatin-like-phospholipase-RssA
MRKIKIGLALGSGAARGWSHIGVIKALKHMGIDIDIVAGCSIGSLVGAAYACNKLPALEQWVCSFSYWDVLRLMDLSWRRGGLLRGERVFNQYRNVMPVLDFEQCTRRFGTVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVAHNGYWLVDGAVVNPVPVSLTRAMGADIVIAVDLQHDAHLMQQDLLSLNVSNDNDESDDSLSWHARLKERLSSMTSRRAVTAPTAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRASAAIAAGQLAVEKKMDELLPLVRTDV
>NC_009792.1|WP_047464045.1|1279240_1279696_-|YchJ-family-protein
MSQLCPCGSAVEYSLCCGPIVSGERVAPDPSHLMRSRYCAFVMKDANYLIRTWHPACGATAFRDDIVAGFAHTEWLGLTIFEESGSDAENTGYVSFVARFIEQGIPGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCG
>NC_009792.1|WP_012132190.1|1278345_1279188_-|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDVTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIGNHETLRPLVERFDIPFELVSHEGLTRDEHDKQMADAIDAHQPDYVVLAKYMRVLTPEFVSRFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNRTIIL
>NC_009792.1|WP_012132187.1|1276713_1277391_+|respiratory-nitrate-reductase-subunit-gamma
MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHFGILGIFAGHFLGMLTPHWMYEAFLPIEVKQKMAMIAGGACGVMTLVGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVGWAQSVVTFHGGASEHLEGVAFIFRLHLVLGMTLFLLFPFSRLVHIWSAPVEYLTRKYQVVRARR
>NC_009792.1|WP_012132186.1|1276003_1276714_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MIELVIVSRLLEYPDAALWQHQQELFDALASSENLDKEDAQSLAVFLRDLTAQEMLDVQASYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYEQHGLQLDSRELPDHLPLYLEYLAQLPKNDALGGLQDIAPILALLGARLQQRESRYAVLFDLLLKLANTVIDSDKVAEKIADEVRDDTPQALDAVWEEEQVKFFAEQGCGESEISAHQRRFAGAVAPQYLNITTGGQQ
>NC_009792.1|WP_012132185.1|1274471_1276007_+|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWVRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYEPFDYDYQNLHTAPESKHQPIARPRSLITGQRMNKITSGPNWEEILGGEFEKRAKDQNFENMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIESAASTENEKDLYQRQLDVFLDPNDPAVIEQALKDGVPQSVIDAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGKLDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVIPSSHRELAREAFPEKSGCGFTFGDGCHGSDTKFNLFNSRRIDAIDVSSKTEPHQ
>NC_009792.1|WP_012132198.1|1284791_1287467_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIIEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYLLQGKELKAVQDVILKNGALNAAIVGQPAYEIAELAGFTVPETTKILIGEVTAVDDSEPFAHEKLSPTLAMYRAKDFEDAVDKAEKLVAMGGIGHTSCLYTDQDNQPERVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMVAITTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKENLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKLLAWLESVKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGREFTEGEVAAKKEAAAPKADKKAKKSA
>NC_009792.1|WP_024130298.1|1287944_1288592_+|YchE-family-NAAT-transporter
MTQTLFDFPVYSKFFIGLFALVNPVGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWISLFLGDGILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHTIMHLIGFSVAIALFAFCCWGVFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKAIFPGLLN
>NC_009792.1|WP_012132200.1|1289363_1290995_+|oligopeptide-ABC-transporter-substrate-binding-protein-OppA
MSNITKKSLLAAGILTALIGGNVAMAADVPAGVQLSDKQTLVRNNGSEVQSLDPHKIEGVPESNVSRDLFEGLLISDVEGHPSPGVAEKWENKDFKVWTFHLRKNAKWSDGTPVTAHDFVYSWQRLANPNTASPYASYLQYGHIANIDDIIAGKKPATDLGVKAIDDNTFEVTLSEPVPYFYKLLVHPSVSPVPKAAVEKFGEKWTQPANIVTNGAYKLKNWVVNERIVLERNTQYWDNDKTVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPNEVRVDPYLCTYYYEINNQKAPFNDVRVRTALKLAMDRDIIVNKVKNQGDLPAYSYTPPYTDGAKLVEPEWFTWSQEKRNEEAKKLLAEAGYTADKPLTFDLLYNTSDLHKKLAIAVASIWKKNLGANVKLENQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYKSPEFDKLIADTLKVTDEAQRTELYAKAEQQLDKDSAIVPLYYYVNARLVKPWVGGYTGKDPMDNIYVKNLYIIKH
>NC_009792.1|WP_012132201.1|1291118_1292039_+|oligopeptide-ABC-transporter-permease-OppB
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYTVNDLVASSFPVSAKLGAAAFFLAVIIGVSAGVIAALKQNTRWDYTVMGVAMTGVVIPSFVVAPLLVMIFAITLKWLPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGTLTILFNAIVDVLYAVIDPKIRY
>NC_009792.1|WP_012132202.1|1292053_1292962_+|oligopeptide-ABC-transporter-permease-OppC
MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLVVLVIIALFVTLAPMLSQFTYFDTDWGMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGRISLMVGIAAALVAVVVGTLYGSLSGYLGGKIDSVMMRLLEILNSFPFMFFVILLVTFFGQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTVSIVVRHIVPNVLGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPACFLVVTLFCFNFIGDGLRDALDPKDR
>NC_009792.1|WP_012132203.1|1292973_1293987_+|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppD
MSVIETSTAPLAQQRANALLDVKDLRVTFSTPDGDVTAVNDLNFTLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPERELNRLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGKARDVFYQPVHPYSIGLLNAVPRLDAEGETMLTIPGNPPNLLRLPKGCPFQPRCPYAMEICSSTPPLEEFSPGRLRACFKPVEELV
>NC_009792.1|WP_012132204.1|1293983_1294988_+|murein-tripeptide/oligopeptide-ABC-transporter-ATP-binding-protein-OppF
MNAVTQERKVLLEIADLKVHFDIKDGKQWFWQPAKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGRVAWLGKDLLGMKPDEWRDVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLPRQEVRDRVKAMMMKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSAVPIPDPDLEKNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHAVSCLKVDPL
>NC_009792.1|WP_012132205.1|1295052_1295382_-|YciU-family-protein
MEMDLNNRLTEDETLEQAYDIFLELAADNLDPADIILFNLQFEERGGAELFDPSEDWQEHVDFDLNPDFFAEVVIGLADSEDGEINDIFARVLLCREKDHKLCHILWRE
>NC_009792.1|WP_012132206.1|1295416_1296877_-|cardiolipin-synthase
MTTFYTVVSWLVILGYWILIAGVTLRILMKRRAVPSAMAWLLIIYILPLVGIIAYLSFGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVASSLFKLCERRQGIAGVKGNQLQLLTDSDDVMQALIRDIQLARHNIEMVFYIWQPGGMADQVAESLMAAARRGIHCRLMLDSAGSVAFFRSPWAAMMRNAGIEVVEALKVNLMRVFLRRMDLRQHRKMVMIDNYIAYTGSMNMVDPRFFKQDAGVGQWVDLMARMEGPVATAMGIVYSCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTAAYSAREYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSMLVGWASRAFFTELLAAGVKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLVIDDAGFGGDLAAVQDDYISRSRLLDARLWVKRPLWQRITERLFYFFSPLL
>NC_009792.1|WP_012132207.1|1297019_1297193_+|YciY-family-protein
MKRSRTEVGRWRMQRQASRRKARWLEGQSRRNMRIHSIRKCILNHQRNTLLFAIHSI

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Crispr_ID: NC_009792_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009792_4

1315452-1315534

Orphan

Consensus_repeat	Method
CGGACTGTTTTGTAGGCCGGATAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009792_4

>merge|NC_009792|4|1315452-1315534|CRISPRCasFinder
CGGACTGTTTTGTAGGCCGGATAAGGAGCCCGGTGGCGCTAATGCTTACCGGGCCTGCGGACTGTTTTGTAGGCCGGATAAGG

>NC_009792|4|4|1315452-1315534|CRISPRCasFinder
CGGACTGTTTTGTAGGCCGGATAAGG	AGCCCGGTGGCGCTAATGCTTACCGGGCCTG
CGGACTGTTTTGTAGGCCGGATAAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009792.1\|WP_012132238.1\|1323782_1324373_-\|GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|234745
NC_009792.1\|WP_012905981.1\|1310033_1310078_-\|trp-operon-leader-peptide	unknown	unknown	unknown
NC_009792.1\|WP_012132223.1\|1311811_1312687_+\|23S-rRNA-pseudouridine(2605)-synthase-RluB	unknown	unknown	gnl\|CDD\|182659
NC_009792.1\|WP_012132222.1\|1311090_1311711_+\|threonylcarbamoyl-AMP-synthase	unknown	unknown	gnl\|CDD\|183245
NC_009792.1\|WP_024130300.1\|1308376_1309939_-\|anthranilate-synthase-component-1	unknown	unknown	gnl\|CDD\|237428
NC_009792.1\|WP_096753854.1\|1320470_1320641_+\|hypothetical-protein	unknown	unknown	unknown
NC_009792.1\|WP_047463536.1\|1310213_1311083_+\|5'-3'-exoribonuclease	unknown	unknown	gnl\|CDD\|223686
NC_009792.1\|WP_012132224.1\|1312778_1313369_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|235662
NC_009792.1\|WP_012132243.1\|1325790_1326960_+\|lipopolysaccharide-assembly-protein-LapB	unknown	unknown	gnl\|CDD\|225504
NC_009792.1\|WP_012132240.1\|1324560_1325325_+\|phosphatidylglycerophosphatase-B	unknown	unknown	gnl\|CDD\|182658
NC_009792.1\|WP_012132242.1\|1325475_1325784_+\|LapA-family-protein	unknown	unknown	gnl\|CDD\|226294
NC_009792.1\|WP_024130299.1\|1305419_1306778_-\|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF	unknown	unknown	gnl\|CDD\|236509
NC_009792.1\|WP_012132231.1\|1319027_1320002_+\|HTH-type-transcriptional-regulator-CysB	unknown	unknown	gnl\|CDD\|183678
NC_009792.1\|WP_012132219.1\|1306781_1308377_-\|bifunctional-anthranilate-synthase-glutamate-amidotransferase-component-TrpG/anthranilate-phosphoribosyltransferase-TrpD	unknown	unknown	gnl\|CDD\|181927
NC_009792.1\|WP_012132230.1\|1316218_1318816_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NC_009792.1\|WP_012132233.1\|1320305_1320467_+\|YmiA-family-putative-membrane-protein	unknown	unknown	gnl\|CDD\|333720
NC_009792.1\|WP_003020616.1\|1315566_1315818_-\|YciN-family-protein	unknown	unknown	gnl\|CDD\|182919
NC_009792.1\|WP_012132237.1\|1321052_1323728_+\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
NC_009792.1\|WP_024130302.1\|1314364_1315411_+\|protease-SohB	unknown	unknown	gnl\|CDD\|236978
NC_009792.1\|WP_012132225.1\|1313365_1314127_-\|YciK-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236357

Protein	Function_ID	Function_description	E-value
NC_009792.1\|WP_012132238.1\|1323782_1324373_-\|GTP-cyclohydrolase-II	gnl\|CDD\|234745	PRK00393, ribA, GTP cyclohydrolase II RibA.	6.9548e-150
NC_009792.1\|WP_012132223.1\|1311811_1312687_+\|23S-rRNA-pseudouridine(2605)-synthase-RluB	gnl\|CDD\|182659	PRK10700, PRK10700, 23S rRNA pseudouridine(2605) synthase RluB.	0
NC_009792.1\|WP_012132222.1\|1311090_1311711_+\|threonylcarbamoyl-AMP-synthase	gnl\|CDD\|183245	PRK11630, PRK11630, threonylcarbamoyl-AMP synthase.	1.7776e-154
NC_009792.1\|WP_024130300.1\|1308376_1309939_-\|anthranilate-synthase-component-1	gnl\|CDD\|237428	PRK13564, PRK13564, anthranilate synthase component 1.	0
NC_009792.1\|WP_012132243.1\|1325790_1326960_+\|lipopolysaccharide-assembly-protein-LapB	gnl\|CDD\|225504	COG2956, COG2956, Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism].	0
NC_009792.1\|WP_047463536.1\|1310213_1311083_+\|5'-3'-exoribonuclease	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	6.12485e-98
NC_009792.1\|WP_012132224.1\|1312778_1313369_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|235662	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase.	5.04451e-121
NC_009792.1\|WP_012132240.1\|1324560_1325325_+\|phosphatidylglycerophosphatase-B	gnl\|CDD\|182658	PRK10699, PRK10699, phosphatidylglycerophosphatase B; Provisional.	6.7866e-155
NC_009792.1\|WP_012132242.1\|1325475_1325784_+\|LapA-family-protein	gnl\|CDD\|226294	COG3771, COG3771, Predicted membrane protein [Function unknown].	2.45152e-44
NC_009792.1\|WP_024130299.1\|1305419_1306778_-\|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF	gnl\|CDD\|236509	PRK09427, PRK09427, bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF.	0
NC_009792.1\|WP_012132231.1\|1319027_1320002_+\|HTH-type-transcriptional-regulator-CysB	gnl\|CDD\|183678	PRK12681, cysB, HTH-type transcriptional regulator CysB.	0
NC_009792.1\|WP_012132219.1\|1306781_1308377_-\|bifunctional-anthranilate-synthase-glutamate-amidotransferase-component-TrpG/anthranilate-phosphoribosyltransferase-TrpD	gnl\|CDD\|181927	PRK09522, PRK09522, bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD.	0
NC_009792.1\|WP_012132230.1\|1316218_1318816_+\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NC_009792.1\|WP_012132233.1\|1320305_1320467_+\|YmiA-family-putative-membrane-protein	gnl\|CDD\|333720	NF000536, YmiA, YmiA family putative membrane protein.	1.06932e-20
NC_009792.1\|WP_003020616.1\|1315566_1315818_-\|YciN-family-protein	gnl\|CDD\|182919	PRK11037, PRK11037, hypothetical protein; Provisional.	1.57225e-57
NC_009792.1\|WP_012132237.1\|1321052_1323728_+\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
NC_009792.1\|WP_024130302.1\|1314364_1315411_+\|protease-SohB	gnl\|CDD\|236978	PRK11778, PRK11778, putative inner membrane peptidase; Provisional.	0
NC_009792.1\|WP_012132225.1\|1313365_1314127_-\|YciK-family-oxidoreductase	gnl\|CDD\|236357	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional.	0

>NC_009792.1|WP_024130302.1|1314364_1315411_+|protease-SohB
MELLSEYGLFLAKIVTVVVAIAVIVMLIVNAAQRKRQRGELRVTNLSEQYKEMKDDLATALMDGHQQKLWHKAQKKKLKLEAKAAKAKAKQGENAATGKPRAWVLDFKGSMDAHEVSALREEVTAVLAAFKPQDQVVVRLESPGGVVHGYGLAASQLQRLRDKQIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQIPNFNRFLKGKDIDIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKHFVQQMRPVLDIEQVATGEHWYGQQALEKGLVDEINTSDDVILRLMDGYEVFNVRFMQRKKLMDRFTGSAAESADRLLLRWWQRGQKPLM
>NC_009792.1|WP_012132225.1|1313365_1314127_-|YciK-family-oxidoreductase
MHYQPKQDLLQNRIILVTGASDGIGREAALTYARYGANVILLGRNEEKLRQVAQTVAEDTGALPQWFTLDLLTCTAEECHQLGQRIAAHYPRLDGVLHNAGLLGDICLMSEQNPHVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYATSKFATEGMMQVLADEYQNHPLRVNCINPGGTRTSMRASAFPTEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRRPGIAQ
>NC_009792.1|WP_012132224.1|1312778_1313369_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MTEERYQQRQQRVKDRVDARVAAAQDERGIIIVFTGNGKGKTTAAFGTATRAVGHGKKVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNRETDTAACMAVWEHGKRMLADPTLDMVVLDELTYMVAYDYLPLEEVINALNARPQNQTVIITGRGCHRDILELADTVSELRPVKHAFEAGVKAQMGIDY
>NC_009792.1|WP_012132223.1|1311811_1312687_+|23S-rRNA-pseudouridine(2605)-synthase-RluB
MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIATLGDRVEITPGLKIRIDGHLISVKESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELVQLAPETTSKVAVEKDRRRMKANQIRRAVKRHSQVGGGRRSGGRNNNG
>NC_009792.1|WP_012132222.1|1311090_1311711_+|threonylcarbamoyl-AMP-synthase
MSQFFYIHPENPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKGAMERICRIRHLPDGHNFTLMCRDLSELSTYSFVDNVAFRLIKNNTPGNYTFILKGTKDVPRRLLQEKRKTIGLRVPSNPIALALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQQPTTVIDLTDDSPVVLREGVGDVKPFL
>NC_009792.1|WP_047463536.1|1310213_1311083_+|5'-3'-exoribonuclease
MSDTNYAVIYDLHSHTTASDGRLTPEALVHRAVEMRVGTLAITDHDTTAAIPAAREEISRSGLALNLIPGVEISTVWENHEIHIVGLNIDIAHPAMCAFLAEQTERRQQRARLIAERLEKAHIPGAWEGALRLADGGAVTRGHFARFLVECGKAGSIADVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYDLSAKWLKRLIAYFALHRGDAMEVAQCQQSPNERTQLATYARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVEGVWQLWEEPQTPQ
>NC_009792.1|WP_012905981.1|1310033_1310078_-|trp-operon-leader-peptide
MKATFVLHGWWRTS
>NC_009792.1|WP_024130300.1|1308376_1309939_-|anthranilate-synthase-component-1
MQIQKPTLELLSCNAAYRENPTALFHQVCGDRPATLLLESADIDSKNDLKSLLLVDSALRITALGDTVTIEALTDNGASLLPLLDAALPAGVENTALPGSRKLRFPAVSPLLDEDARLCSLSVFDAFRLLQNLVNVPAEEREAMFFGGLFAYDLVAGFEVLPQLEAGNRCPDYCFYLAETLMVIDHQKKSTRIQASLFTDNEAEKQRLTAHLAQLTQQLTEPAPPLPVTPVPQMRCECSQSDEEFGAVVRTMQKAIRAGEIFQVVPSRRFSLPCPSPLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDATSRQIEIYPIAGTRPRGRRADGSLDRDLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDRYSFVMHLVSRVVGELRSDLDVLHAYRACMNMGTLSGAPKVRAMQLIAGAEGRRRGSYGGAVGYFTAHGDLDTCIVIRSALVEDGIATVQAGAGIVLDSVPQSEADETRNKARAVLRAIATAHHAQEIF
>NC_009792.1|WP_012132219.1|1306781_1308377_-|bifunctional-anthranilate-synthase-glutamate-amidotransferase-component-TrpG/anthranilate-phosphoribosyltransferase-TrpD
MADILLLDNIDSFTYNLADQLRANGHNVVIYRNHIPAQTLIDRLATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLVNPLPVARYHSLVGSNVPAGLTINAHFNGMVMAVRHDTDRVCGFQFHPESILTTQGALLLEQTLAWAQQKLEPTNTLQPILEKLYQAQTMTQQESHQLFSAVVRGELKPEQLAAALVSMKVRGEHPNEIAGAATALLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQALDDLGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGEAAHEAAVAANVAMLMRLHGKEDLKANAQTVIDVLRSGAAYDRVTALAARG
>NC_009792.1|WP_024130299.1|1305419_1306778_-|bifunctional-indole-3-glycerol-phosphate-synthase-TrpC/phosphoribosylanthranilate-isomerase-TrpF
MQTVLAKIVADKAIWVEARKQQQPLASFQNEVQPSARHFYDALQGTRTAFILECKKASPSKGVIRDDFDPAQIAGVYKHYASAISVLTDEKYFQGSFDFLTVVSRIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDNEQYRQLSAVAHSLKMGVLTEVSNEEELERAIALGAKVVGINNRDLRDLSIDLNRTRQLAPKLGHGVTVISESGINTYAQVRELSHFANGFLIGSALMSHADLHAAVRRVLLGENKVCGLTRGQDAKAAYDAGAIYGGLIFVPSSPRVVNLDQAREVIAAAPLQYVGVFRNTAITEVCEKATTLSLKVVQLHGSEDQAYVDALRAALPEQVQIWKALSVGDTLPARDYQHVDKYVLDNGQGGSGQRFDWSLLNGETLDNVLLAGGLGADNCVEAAKTGCAGLDFNSGVESQPGIKDAHLLASVFQTLRAY
>NC_009792.1|WP_003020616.1|1315566_1315818_-|YciN-family-protein
MHKDTQPIDRETLLIEANKIIREHEDTLAGIVATGVTQRNGVLVFSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLID
>NC_009792.1|WP_012132230.1|1316218_1318816_+|type-I-DNA-topoisomerase
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWDAQYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIAWHLREVIGGDDTRYSRVVFNEITKNAIRQAFDKPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFVPEEFWEVSASTTTPSGDALPLDVTHQNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDSFGKKYLPENPNQYASKENSQEAHEAIRPSDVAVMAEALKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRTLPAVNKGDVLTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMEDSLDKVASHEAEWKNVLDNFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGDDAETNALRAKRRCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIFLAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTLVRFSRKTKQQYVAAEKDGKATGWSAFFVDGKWVEGKK
>NC_009792.1|WP_012132231.1|1319027_1320002_+|HTH-type-transcriptional-regulator-CysB
MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDELGIQIFARSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHTQARYALPNVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVMLPCYHWNRSIVVTPEHPLAAKSSVTIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTPRIVFTATDADVIKTYVRLGLGVGVIASMAVDPISDPDLVRVDAHDIFSHSTTKIGFRRSTFLRSYMYDFIQRFAPHLTRDVVDTAVALRSNEEIEAMFNDIKLPEK
>NC_009792.1|WP_012132233.1|1320305_1320467_+|YmiA-family-putative-membrane-protein
MISDADCMRLAMPSGNQEPRRDPELKRKAWLAVFLGSALFWVVIALVIWQVWG
>NC_009792.1|WP_096753854.1|1320470_1320641_+|hypothetical-protein
MVSQEHQQPSTPARQPRDSVKEARSECVTNIPESWKLTQQQQAFIDSFAEDEQQKQ
>NC_009792.1|WP_012132237.1|1321052_1323728_+|aconitate-hydratase-AcnA
MSSTLREASKDTLQAKDKTYHYYSLPLAAKKLGDITRLPKSLKVLLENLLRWQDGDSVTEEDIQALAGWLKKAHADREIAYRPARVLMQDFTGVPAVVDLAAMREAVKRLGGDTAKVNPLSPVDLVIDHSVTVDRFGDDDAFEENVRLEMERNHERYVFLKWGQQAFSRFSVVPPGTGICHQVNLEYLGKAVWSELQAGEWVAYPDTLVGTDSHTTMINGLGVLGWGVGGIEAEAAMLGQPVSMLIPDVVGFKLTGKLREGITATDLVLTVTQMLRKHGVVGKFVEFYGDGLDSLPLADRATIANMSPEYGATCGFFPIDGITLEYMRLSGRSEEQVELVETYAKAQGVWRNPGDEPVFTSSLELDMGDVEASLAGPKRPQDRVALADVPKAFAASTELELNTAQKDRQPIDYVMNGHQYQLPDGAVVIAAITSCTNTSNPSVLMAAGLLAKKAVTLGLKRQPWVKASLAPGSKVVSDYLAQAKLTPYLDELGFNLVGYGCTTCIGNSGPLPEPIETAIKKGDLTVGAVLSGNRNFEGRIHPLVKTNWLASPPLVVAYALAGNMNINLAKEPLGHDRKGDPVYLKDIWPSAREIARAVELVSSEMFHKEYAEVFEGTPEWKAINVDRSDTYGWQDDSTYIRLSPFFDEMQVQPDPVEDIHGARILAMLGDSVTTDHISPAGSIKADSPAGRYLQNHGVERRDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGVEGGMTRHLPGTEVISIYDAAMLYQQEKTPLAVIAGKEYGSGSSRDWAAKGPRLLGIRVVIAESFERIHRSNLIGMGILPLEFPQGVTRKTLGLTGEETIDIASLQNLKPGAAIPVTLTKVDGSTEVISCRCRIDTATELTYYQNDGILHYVIRNMLH
>NC_009792.1|WP_012132238.1|1323782_1324373_-|GTP-cyclohydrolase-II
MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGQTPVLARVHSECLTGDALFSLRCDCGFQLEAALTHIAEEGRGILLYHRQEGRNIGLLNKIRAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVDEVRLLTNNPKKVEILTEAGINIVERVPLIVGRNPNNEHYLDTKAAKMGHLLGK
>NC_009792.1|WP_012132240.1|1324560_1325325_+|phosphatidylglycerophosphatase-B
MLSIAKRTTVGAALLLVMPVSVWISGWNWQPGHSVWWLKSLYWVTETVTQPWGIITHVLLCAWFLWCLRFRLKAAMMLFAILAGAILLGQGVKSLVKERVQEPRPFVIWLEKTHHIPVDEFYTLKRKERGHLVKEQLSGQQDIPAFLRQHWQKETGFAFPSGHTLFAASWALLAVGLLWPRRRTLTIAILLVWATSVMGSRLLLGMHWPRDLVVATLISWLLVTLATWLAQRICGPLTPPVEEAREIAQREQER
>NC_009792.1|WP_012132242.1|1325475_1325784_+|LapA-family-protein
MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTLLAVLFAAGFAIGWLICGLFWLRVRVSLVRAERKIKRLENQLPPATDVAVSADSSVVKE
>NC_009792.1|WP_012132243.1|1325790_1326960_+|lipopolysaccharide-assembly-protein-LapB
MLELLFLLLPVAAAYGWYMGRRSAQQTKQDEANRLSRDYVAGVNFLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLTYEQRLLAVQQLGRDYMAAGLYDRAEDMFNQLTDETDFRVGALQQLLQIYQATSDWQKAIDVAERLVKLGKDKQRIEIAHFYCELALQQMGCDDMDRAMTLLKKGAAADKNSARVSIMMGRVFMAKGEYAKAVESLQRVISQDKELVSETLEMLQTCYQQLGKNDEWAEFLRRAVEENTGAAAELMLADILEAREGHDTAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRAKESLMVLRDMVGEQVRSKPRYRCQKCGFTAYTMYWHCPSCRAWSTIKPIRGLDGQ

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Click the colored protein region to show detailed information

Crispr_ID: NC_009792_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009792_5

1685191-1685387

Orphan

Consensus_repeat	Method
ATCACTGCATAACTCCCGTAGGCCCGATAAGCGAAGCGCCATCGGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009792_5

>merge|NC_009792|5|1685191-1685387|CRISPRCasFinder
ATCACTGTATAACGCCCGTAGGCCCGATAAGCGAAGCGCCATCGGGCGCGAACGTATCGTCTTATCCGGCCTATATCACTGCATAACTCCCGTAGGCCCGATAAGCGAAGCGCCATCGGGCGCGAACGTACCGTCTTATCCAACCTACATCACTGTATAACTCCCGTAGGCCCGATAAGCGAAGCGCCATCGGGCGC

>NC_009792|5|5|1685191-1685387|CRISPRCasFinder
ATCACTGTATAACGCCCGTAGGCCCGATAAGCGAAGCGCCATCGGGCGC	GAACGTATCGTCTTATCCGGCCTATATCACTGCATAACTCCCGTAGGCCCGATAAGCGAAGCGCCATCGGGCGCGAACGTACCGTCTTATCCAACCTAC
ATCACTGTATAACTCCCGTAGGCCCGATAAGCGAAGCGCCATCGGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009792.1\|WP_012132630.1\|1683753_1684095_-\|osmotically-inducible-lipoprotein-OsmE	unknown	unknown	gnl\|CDD\|183058
NC_009792.1\|WP_012132622.1\|1677746_1677989_-\|cell-division-activator-CedA	unknown	unknown	gnl\|CDD\|182246
NC_009792.1\|WP_012132628.1\|1681687_1683046_-\|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|182363
NC_009792.1\|WP_012132624.1\|1678186_1678945_-\|chitin-disaccharide-deacetylase	unknown	unknown	gnl\|CDD\|235007
NC_009792.1\|WP_012132636.1\|1686961_1687930_-\|succinylglutamate-desuccinylase	unknown	unknown	gnl\|CDD\|235408
NC_009792.1\|WP_012132625.1\|1678957_1680313_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NC_009792.1\|WP_012132621.1\|1676305_1677697_+\|cystine/sulfocysteine:cation-symporter	unknown	unknown	gnl\|CDD\|224736
NC_009792.1\|WP_012132626.1\|1680436_1681279_-\|transcriptional-regulator-ChbR	unknown	unknown	gnl\|CDD\|182362
NC_009792.1\|WP_012132638.1\|1689262_1690741_-\|succinylglutamate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|181873
NC_009792.1\|WP_012132639.1\|1690737_1691772_-\|arginine-N-succinyltransferase	unknown	unknown	gnl\|CDD\|182474
NC_009792.1\|WP_012132631.1\|1684323_1685154_+\|ammonia-dependent-NAD(+)-synthetase	unknown	unknown	gnl\|CDD\|234831
NC_009792.1\|WP_012132634.1\|1686148_1686637_-\|ATP-independent-periplasmic-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|182473
NC_009792.1\|WP_012132627.1\|1681286_1681637_-\|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|182472
NC_009792.1\|WP_012132643.1\|1693434_1694241_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|236970
NC_009792.1\|WP_012132645.1\|1694939_1696103_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|183238
NC_009792.1\|WP_024130389.1\|1683132_1683453_-\|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|182499
NC_009792.1\|WP_077956896.1\|1694364_1694925_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NC_009792.1\|WP_012132640.1\|1691768_1692989_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|183486
NC_009792.1\|WP_012132633.1\|1685400_1685976_-\|environmental-stress-induced-protein-Ves	unknown	unknown	gnl\|CDD\|236905
NC_009792.1\|WP_012132637.1\|1687922_1689266_-\|N-succinylarginine-dihydrolase	unknown	unknown	gnl\|CDD\|237332

Protein	Function_ID	Function_description	E-value
NC_009792.1\|WP_012132630.1\|1683753_1684095_-\|osmotically-inducible-lipoprotein-OsmE	gnl\|CDD\|183058	PRK11251, PRK11251, osmotically-inducible lipoprotein OsmE.	2.8964e-65
NC_009792.1\|WP_012132622.1\|1677746_1677989_-\|cell-division-activator-CedA	gnl\|CDD\|182246	PRK10113, PRK10113, cell division activator CedA.	1.95789e-49
NC_009792.1\|WP_012132628.1\|1681687_1683046_-\|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIC	gnl\|CDD\|182363	PRK10297, PRK10297, PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional.	0
NC_009792.1\|WP_012132624.1\|1678186_1678945_-\|chitin-disaccharide-deacetylase	gnl\|CDD\|235007	PRK02134, PRK02134, chitin disaccharide deacetylase.	1.42272e-173
NC_009792.1\|WP_012132636.1\|1686961_1687930_-\|succinylglutamate-desuccinylase	gnl\|CDD\|235408	PRK05324, PRK05324, succinylglutamate desuccinylase; Provisional.	0
NC_009792.1\|WP_012132625.1\|1678957_1680313_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NC_009792.1\|WP_012132621.1\|1676305_1677697_+\|cystine/sulfocysteine:cation-symporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NC_009792.1\|WP_012132626.1\|1680436_1681279_-\|transcriptional-regulator-ChbR	gnl\|CDD\|182362	PRK10296, PRK10296, DNA-binding transcriptional regulator ChbR; Provisional.	0
NC_009792.1\|WP_012132638.1\|1689262_1690741_-\|succinylglutamate-semialdehyde-dehydrogenase	gnl\|CDD\|181873	PRK09457, astD, succinylglutamic semialdehyde dehydrogenase; Reviewed.	0
NC_009792.1\|WP_012132639.1\|1690737_1691772_-\|arginine-N-succinyltransferase	gnl\|CDD\|182474	PRK10456, PRK10456, arginine succinyltransferase; Provisional.	0
NC_009792.1\|WP_012132631.1\|1684323_1685154_+\|ammonia-dependent-NAD(+)-synthetase	gnl\|CDD\|234831	PRK00768, nadE, ammonia-dependent NAD(+) synthetase.	0
NC_009792.1\|WP_012132634.1\|1686148_1686637_-\|ATP-independent-periplasmic-protein-refolding-chaperone	gnl\|CDD\|182473	PRK10455, PRK10455, periplasmic protein; Reviewed.	1.72492e-89
NC_009792.1\|WP_012132627.1\|1681286_1681637_-\|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIA	gnl\|CDD\|182472	PRK10454, PRK10454, PTS N,N'-diacetylchitobiose transporter subunit IIA.	1.50881e-63
NC_009792.1\|WP_012132643.1\|1693434_1694241_+\|exodeoxyribonuclease-III	gnl\|CDD\|236970	PRK11756, PRK11756, exonuclease III; Provisional.	0
NC_009792.1\|WP_012132645.1\|1694939_1696103_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|183238	PRK11622, PRK11622, ABC transporter substrate-binding protein.	0
NC_009792.1\|WP_024130389.1\|1683132_1683453_-\|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIB	gnl\|CDD\|182499	PRK10499, PRK10499, PTS sugar transporter subunit IIB.	6.49975e-66
NC_009792.1\|WP_077956896.1\|1694364_1694925_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	4.96297e-26
NC_009792.1\|WP_012132640.1\|1691768_1692989_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|183486	PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional.	0
NC_009792.1\|WP_012132633.1\|1685400_1685976_-\|environmental-stress-induced-protein-Ves	gnl\|CDD\|236905	PRK11396, PRK11396, environmental stress-induced protein Ves.	3.7152e-148
NC_009792.1\|WP_012132637.1\|1687922_1689266_-\|N-succinylarginine-dihydrolase	gnl\|CDD\|237332	PRK13281, PRK13281, N-succinylarginine dihydrolase.	0

>NC_009792.1|WP_012132631.1|1684323_1685154_+|ammonia-dependent-NAD(+)-synthetase
MTLQQEIIRALGAKPHINAEEEIRRSVDFLKAYLKTYPFLKSLVLGISGGQDSTLTGKLCQTAITELREETGNDALQFIAVRLPFGVQADEQDCQDAIAFIQPDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTNGVVVGTDHAAEAVTGFFTKYGDGGTDINPLFRLNKRQGKQLLAALGCPEHLYKKAPTADLEDDRPSLPDEAALGVTYDNIDDYLEGKTLDASIAKIIEGWYIRTEHKRRTPITVFDDFWKRS
>NC_009792.1|WP_012132630.1|1683753_1684095_-|osmotically-inducible-lipoprotein-OsmE
MNKNIAGILSAAAVMTMLAGCTAYDRTKDQFVQPVVKDVKKGMSRSQVEQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQSCAEYDTDPQAPKQ
>NC_009792.1|WP_024130389.1|1683132_1683453_-|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIB
MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGLSADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKKAAAN
>NC_009792.1|WP_012132628.1|1681687_1683046_-|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIC
MSNVIASLEKVLLPFAVKIGKQPHVNAIKNGFIRLMPLTLAGAMFVLINNVFLSFGEGSFFYSLGIRLDASTIETLNGLKGIGGNVYNGTLGIMSLMAPFFIGMALAEERKVDALAAGLLSVAAFMTVTPYSVGEAYAVGANWLGGANIISGIIIGLVVAEMFTFIVRRNWVIRLPDSVPASVSRSFSALIPGFIILSIMGIIAWALANYGSNFHQIIMDTISTPLASLGSVVGWAYVLFVPLLWFFGIHGSLALTALDSGIMTPWALENIAIYQQFGSVDAALEAGKTFHVWAKPMLDSYIFLGGSGATLGLIIAIFLASRRADYRQVAKLALPSGIFQINEPILFGLPIIMNPVMFIPFILVQPILAAITLIAYYLGIIPPITNIAPWTMPTGLGAFFNTNGSVAALLVALFNLGVATLIYLPFVVVANKAQNAIEQEESEEEIANALKF
>NC_009792.1|WP_012132627.1|1681286_1681637_-|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIA
MLDLENVAGTPSEAEELEEVVMGLIINSGQARSLAYAALKQAKQGDFAAAKTMMEQSRMALNEAHLVQTKLIEGDQGEGKMKVSLVLVHAQDHLMTSMLARELVTELIELHEKLEQ
>NC_009792.1|WP_012132626.1|1680436_1681279_-|transcriptional-regulator-ChbR
MMQLQVNAPEIATAREQQLFNGKNFHVFIYNKTESISGLHQHDYYEFTLVLTGRYYQEINGKRVLLERGDFVFIPLGSHHQSFYEFGATRILNVGISKRFFEQHYHPLLPFCFVASQVYRVNSAFLTYIETVIASLNFRGNGLDEFVEVVTFYIINRLRHHREEQVIDDIPQWLKATVETMHDKTQFGENALENMVHLSAKSQEYLTRATQRYYSKTPMQIINEIRINFAKKQLEMTNYSVTDIAYEAGYSSPSLFIKTFKKLTSFTPNSYRKKLTEFNQ
>NC_009792.1|WP_012132625.1|1678957_1680313_-|6-phospho-beta-glucosidase
MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVSELWLVDVEDGKEKLDIIFDLCQRMIDKAGVPLKLYKTLDRREALQGADFVTTQLRVGQLKAREQDERIPLSHGYLGQETNGAGGLFKGLRTIPVIFDIVKDVEELCPNAWVINFTNPAGMVTEAVYRHTHFKKFIGVCNIPVGMKMFIHDVLALQDSDDLSIDLFGLNHMVFIKDVLVNGESRFAELLDGVASGQLKASTVKNIFDLPFSEGLIRSLNMLPCSYLLYYFKQKEMLAIEMGEYYKGGARAQVVQKVEKQLFDLYKNPELNIKPKELEQRGGAYYSDAACEVINAIYNDKQTEHYVNIPHHGHVDNIPADWAVEMTCTLGRNGATPHPRITHFDEKVLGLIYTIKGFEVAASKAALSGEFNDVLLALNLSPLVHSDRDAETLARELILAHEKWLPNFAECIEKLKGAQH
>NC_009792.1|WP_012132624.1|1678186_1678945_-|chitin-disaccharide-deacetylase
MERLLIVNADDFGLSKGQNYGIVEACRNGVVTSTTALVNGDAIDHAAQLCRDVPKLAVGMHFVLTLGKPLTAMPGLTREGLLGKWIWQMAEEETLPLDEISHELECQYQRFIDLFGREPTHLDSHHHVHMFPQIFPIVAMFAAERGVALRIDRQSVLNADDLPVALRSSQGFSSEFYGDAISEALFLQVLDASADRGEKSLEVMCHPAFIDNIIRQSAYCYPRLTELDVLTSASLKYAIAERGYRLGSFLDV
>NC_009792.1|WP_012132622.1|1677746_1677989_-|cell-division-activator-CedA
MMKPLRQQNRPVISYVPRVEPAPPEHAIKMDAFRDVWILRGKYVAFILMGEAFQRSPAFTVPESAQRWANQVRQENEIAE
>NC_009792.1|WP_012132621.1|1676305_1677697_+|cystine/sulfocysteine:cation-symporter
MNFPLIANIVVFVALLFVLAQTRHKQWSLAKKVLVGLVMGVIFGLALHTVYGSDSQVLKDSVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLGKISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIETNYVGKVADLSVPQLVLSFVPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLIAIDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLIIMFVVHGILLGVNGVSPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFSASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPVWIATLVGIVTVSSAGVAGVGGGATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKTLLDSEDDAELAHH
>NC_009792.1|WP_012132633.1|1685400_1685976_-|environmental-stress-induced-protein-Ves
MEYFDIRKMPVNLWRNGAGETREICCFPPATRDFHWRASIASIAGNGEFSLFPGVERVITLLEGGEVMLEGVNAFTHTLKRHQPFTFAGDSVVKATLSEGQMSMDLNIMTRRDRCKAKVRVADRTFTTFGSRGGVVFVISGAWQLGDKLLTADQGACWHDGKHTLRLLKPEGQLLFSEITWLPGYTPDTVQ
>NC_009792.1|WP_012132634.1|1686148_1686637_-|ATP-independent-periplasmic-protein-refolding-chaperone
MRKLTALFVASTLALGAANLAHAADTTTAAPADAKPMMHHKGKFGPHHDMMFKDLNLTDAQKQQIRDIMKGQRDQMKRPPLEERRAMHDIITSDSFDKAKAEAQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERPAPEGKMPTPPAE
>NC_009792.1|WP_012132636.1|1686961_1687930_-|succinylglutamate-desuccinylase
MDNFLAQTLAGISPDITQGETESFHWRWQMPGVLELTPAVEVDRALVLSAGIHGNETAPVEMLAALLSALFEGKIPLRWRLLVILGNPPALAEGVRYCHSDMNRMFGGRWQMFEESGETLRARELEQLLEDFYSRRKTRIRWHLDLHTAIRGSRHVRFGVLPQRSIPWDEHFLSWLGAAGLEALVFHQTPGGTFTHFSCEHFGALSCTLELGKALPFGHNDLTQFTPTAQALATLLAGEKPMEGGTRPIRYRVVAQITRRSDAFVLCMDNQTLNFTPFKKGTLLAQDGDEQVIVTHDVEYVLFPNPNVACGLRAGLMLEKLA
>NC_009792.1|WP_012132637.1|1687922_1689266_-|N-succinylarginine-dihydrolase
MKAHEVNFDGLVGLTHHYAGLSFGNEASIQHRFQVSNPRLAAKQGLLKMKALADAGFPQAVIPPHERPFIPVLRQLGFSGQDEQVLEKVARQAPHWLSSVSSASPMWVANAATVCPSADALDGKVHLTVANLNNKFHRALEAPTTASLLRAIFRDAQFFAVHDALPQVALLGDEGAANHNRLGGDYGAPGIQLFVYGREEGVDTRPVRYPARQTREASEAVARLNQVNPHQVIFARQNPDVIDLGVFHNDVIAVSNRQVLFCHEQAFAKQGELMRQLRSRVAGFMPLEVPAREVSVQDAVATYLFNSQLLSRDDGSMVLVLPQECREHAGVWRYLNALLAADNPISDLRVFDLRESMANGGGPACLRLRVVLTEDELRAVNPAVMMNDTLFSTLNDWVDRYYRDRLTAADLADPQLLREGREALDTLTQLLNLGSVYPFQQEGAGNG
>NC_009792.1|WP_012132638.1|1689262_1690741_-|succinylglutamate-semialdehyde-dehydrogenase
MTLWINGDWVTGQGERRVKTNPVNGEVLWQGSDADATQVAEAGRAARAAFPTWARLPFAARQAIVEKFAALLEVHKAELTAIIARETGKPCWEAATEVTAMINKIAISVKAYHARTGEQQSELPDGAATLRHRPHGVLAVFGPYNFPGHLPNGHIVPALLAGNTLIFKPSELTPWTGEAVMKLWQQAGLPPGVLNLVQGGRETGQALSALDALDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIENPEDIDAAVHLTIQSAFVTAGQRCTCARRLLVKRGEQGDAFLARLLEVSQRLTPGEWDDEPQPFIGGLISEPAARHVYEAWQRLEAMGGRTLLAPRMLKAGTSLLTPGIIEMTGVKQVPDDEVFGPLLSVWRYERFDEAIRMANNTRFGLSCGLVSPDRKQFDQLLLEARAGIVNWNKPLTGAASTAPFGGVGASGNHRPSAWYAADYCAWPMASLESPTLVLPDSLSPGLDFSREEPV
>NC_009792.1|WP_012132639.1|1690737_1691772_-|arginine-N-succinyltransferase
MMVIRPVERRDVSALMQLASKTGGGLTSLPADEATLTSRIERALKTWRGELPKSEQGYVFVLEDSDTGSVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNEKVVAEMRGVIDEHGYSPFWESLGERFFSMEFSRADYLCGTGQKAFIAELMPKHPIYTHFLSEEAQAVIGEVHPQTAPARTVLEKEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLLDVVEGQPAPGEFPACLVANENYHHFRAMLIRTDPDTQRLVLTAAQLDALKCHAGDRVRLVRLCAEEKTA
>NC_009792.1|WP_012132640.1|1691768_1692989_-|aspartate-aminotransferase-family-protein
MSLSITRENFDEWMMPVYAPAPFIPVRGEGSRLWDQQGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGNGYTNEPVLRLAKMLIDATFAERVFFCNSGAEANEAALKLARKYAHDRFGTHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPPDIRHAVYNDLNAASELIDDTTCAVIVEPMQGEGGVLPATKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGGFPIGALLATEKCASVMTVGTHGTTYGGNPLASAVAGKLLEIVNTPEMLNGVKQRHDGFVERLNAINERFGLFSEIRGLGLLIGCVLEAEFAGKAKLISQEAAKAGVMVLIAGANVVRFAPALNVSKEEVATGLDRFALACERIKAGGSS
>NC_009792.1|WP_012132643.1|1693434_1694241_+|exodeoxyribonuclease-III
MKFVSFNINGLRARPHQLSAIVDKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPVSVRRGFPDDGEEAQRRIIMAEIPSPLGSITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLDNELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWMDRLINWGLVDTFRHAHPETVDKFSWFDYRSKGFDDNRGLRIDLLLASNPLAEHCVETGIDYEIRSMEKPSDHAPVWAKFRV
>NC_009792.1|WP_077956896.1|1694364_1694925_+|TVP38/TMEM64-family-protein
MLAAWQQQSPFLSAGLYFLVYTLVAALSIPGAALLTLLGGALFGLWQGTLLVSFASTLGATLAMLASRYLLREWISRRFARQMQTVNHGMARDGAFYLFALRVMPLFPFVLVNLLAGLTSIRVRQYWWISQAGMFPATVIYLNAGRQLSQLTSIRDIISPGMLAAFALLGLLPLASRWLVKRFLRS
>NC_009792.1|WP_012132645.1|1694939_1696103_+|ABC-transporter-substrate-binding-protein
MRRTLLLAGLLLTGHVQAVENWQAVKDEAKGQTVWFNAWGGDNAVNQYLDWVSGEMKTHYAINLRIVRLADAADAVKRIQTESAAGRKTDGSVDLLWVNGENFRTLKEAGLLQTHWAETLPNWRYVDTRKPVREDFSMPTQGAESPWGGAQLTFIANRDITPQPPQSPQALLAFAKAHPGTVTYPRPPDFTGTAFLEQLLLALTPQPDALKVVPDDATFDSVTAPLWAYLDALHPSLWRKGKDFPPSPARMDALLQAGSLRLSLTFNPAHAQQKIASGELPKTSYSFGFSQGMIGNVHFVTIPANARASAGAKVVANFLLSPDAQLRKADPAFWGDPSVLDPHKLPAGQREALRSRIPDGLPPTLAEPHSAWVNALEQAWLRRYGTQ

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Crispr_ID: NC_009792_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009792_6

1815563-1815660

Unclear

Consensus_repeat	Method
CCTGTAGGCCCGGTAAGCGCAGCGCCACCGGGC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_009792_6

>merge|NC_009792|6|1815563-1815660|CRISPRCasFinder
CCTGTAGGCCCGGTAAGCGCAGCGCCACCGGGCACATCGCCTTATCCGGCCTACGGGAAGCATATCCTGTAGGCCCGGTAAGCACAGCGCCACCGGGC

>NC_009792|6|6|1815563-1815660|CRISPRCasFinder
CCTGTAGGCCCGGTAAGCGCAGCGCCACCGGGC	ACATCGCCTTATCCGGCCTACGGGAAGCATAT
CCTGTAGGCCCGGTAAGCACAGCGCCACCGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009792.1\|WP_012132806.1\|1816840_1817098_-\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|369322
NC_009792.1\|WP_012132798.1\|1808701_1809403_-\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|183244
NC_009792.1\|WP_024130432.1\|1817338_1817974_+\|TetR-family-copper-responsive-transcriptional-repressor-ComR	unknown	unknown	gnl\|CDD\|224228
NC_009792.1\|WP_024130434.1\|1818822_1820127_-\|NADH-quinone-dehydrogenase	unknown	unknown	gnl\|CDD\|224172
NC_009792.1\|WP_012132812.1\|1820375_1820918_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|179896
NC_009792.1\|WP_024130435.1\|1820941_1821967_-\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|235417
NC_009792.1\|WP_024130429.1\|1807457_1808702_-\|lipoprotein-releasing-ABC-transporter-permease-subunit-LolE	unknown	unknown	gnl\|CDD\|236860
NC_009792.1\|WP_024130433.1\|1818047_1818587_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|183072
NC_009792.1\|WP_012132800.1\|1810856_1811930_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|227104
NC_009792.1\|WP_012132796.1\|1806513_1807425_-\|N-acetylglucosamine-kinase	unknown	unknown	gnl\|CDD\|183967
NC_009792.1\|WP_012132792.1\|1802870_1803728_+\|spermidine/putrescine-ABC-transporter-permease-PotB	unknown	unknown	gnl\|CDD\|181910
NC_009792.1\|WP_012132793.1\|1803724_1804504_+\|spermidine/putrescine-ABC-transporter-permease-PotC	unknown	unknown	gnl\|CDD\|236542
NC_009792.1\|WP_012132801.1\|1812059_1815506_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182649
NC_009792.1\|WP_024130436.1\|1821977_1822802_-\|thiamine-kinase	unknown	unknown	gnl\|CDD\|182349
NC_009792.1\|WP_012132794.1\|1804528_1805575_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein-PotD	unknown	unknown	gnl\|CDD\|181913
NC_009792.1\|WP_024130430.1\|1809395_1810595_-\|lipoprotein-releasing-ABC-transporter-permease-subunit-LolC	unknown	unknown	gnl\|CDD\|182753
NC_009792.1\|WP_024130431.1\|1815795_1816761_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|182294
NC_009792.1\|WP_024130428.1\|1805676_1806498_-\|NAD-dependent-protein-deacylase	unknown	unknown	gnl\|CDD\|234777
NC_009792.1\|WP_024130437.1\|1823437_1823812_-\|YcfL-family-protein	unknown	unknown	gnl\|CDD\|227920
NC_009792.1\|WP_012132815.1\|1822782_1823424_-\|penicillin-binding-protein-activator-LpoB	unknown	unknown	gnl\|CDD\|225951

Protein	Function_ID	Function_description	E-value
NC_009792.1\|WP_012132806.1\|1816840_1817098_-\|DUF1471-domain-containing-protein	gnl\|CDD\|369322	pfam07338, DUF1471, Protein of unknown function (DUF1471). This family consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some members of this family are annotated as ydgH precursors and contain two copies of this region, one at the N-terminus and the other at the C-terminus. The function of this family is unknown.	5.12186e-15
NC_009792.1\|WP_012132798.1\|1808701_1809403_-\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	gnl\|CDD\|183244	PRK11629, lolD, lipoprotein-releasing ABC transporter ATP-binding protein LolD.	2.1553e-165
NC_009792.1\|WP_024130432.1\|1817338_1817974_+\|TetR-family-copper-responsive-transcriptional-repressor-ComR	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.91102e-14
NC_009792.1\|WP_024130434.1\|1818822_1820127_-\|NADH-quinone-dehydrogenase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	1.03107e-169
NC_009792.1\|WP_012132812.1\|1820375_1820918_-\|alpha/beta-hydrolase	gnl\|CDD\|179896	PRK04940, PRK04940, hypothetical protein; Provisional.	5.74975e-145
NC_009792.1\|WP_024130435.1\|1820941_1821967_-\|beta-N-acetylhexosaminidase	gnl\|CDD\|235417	PRK05337, PRK05337, beta-hexosaminidase; Provisional.	0
NC_009792.1\|WP_024130429.1\|1807457_1808702_-\|lipoprotein-releasing-ABC-transporter-permease-subunit-LolE	gnl\|CDD\|236860	PRK11146, PRK11146, lipoprotein-releasing ABC transporter permease subunit LolE.	0
NC_009792.1\|WP_024130433.1\|1818047_1818587_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|183072	PRK11280, PRK11280, hypothetical protein; Provisional.	1.81572e-109
NC_009792.1\|WP_012132800.1\|1810856_1811930_+\|acyltransferase-family-protein	gnl\|CDD\|227104	COG4763, COG4763, Predicted membrane protein [Function unknown].	3.03773e-118
NC_009792.1\|WP_012132796.1\|1806513_1807425_-\|N-acetylglucosamine-kinase	gnl\|CDD\|183967	PRK13310, PRK13310, N-acetyl-D-glucosamine kinase; Provisional.	0
NC_009792.1\|WP_012132792.1\|1802870_1803728_+\|spermidine/putrescine-ABC-transporter-permease-PotB	gnl\|CDD\|181910	PRK09497, potB, spermidine/putrescine ABC transporter membrane protein; Reviewed.	2.55578e-176
NC_009792.1\|WP_012132793.1\|1803724_1804504_+\|spermidine/putrescine-ABC-transporter-permease-PotC	gnl\|CDD\|236542	PRK09500, potC, spermidine/putrescine ABC transporter membrane protein; Reviewed.	3.42942e-163
NC_009792.1\|WP_012132801.1\|1812059_1815506_+\|transcription-repair-coupling-factor	gnl\|CDD\|182649	PRK10689, PRK10689, transcription-repair coupling factor; Provisional.	0
NC_009792.1\|WP_024130436.1\|1821977_1822802_-\|thiamine-kinase	gnl\|CDD\|182349	PRK10271, thiK, thiamine kinase; Provisional.	4.84266e-124
NC_009792.1\|WP_012132794.1\|1804528_1805575_+\|spermidine/putrescine-ABC-transporter-substrate-binding-protein-PotD	gnl\|CDD\|181913	PRK09501, potD, spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed.	0
NC_009792.1\|WP_024130430.1\|1809395_1810595_-\|lipoprotein-releasing-ABC-transporter-permease-subunit-LolC	gnl\|CDD\|182753	PRK10814, PRK10814, lipoprotein-releasing ABC transporter permease subunit LolC.	0
NC_009792.1\|WP_024130431.1\|1815795_1816761_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	1.37005e-101
NC_009792.1\|WP_024130428.1\|1805676_1806498_-\|NAD-dependent-protein-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	1.76707e-132
NC_009792.1\|WP_024130437.1\|1823437_1823812_-\|YcfL-family-protein	gnl\|CDD\|227920	COG5633, COG5633, Predicted periplasmic lipoprotein [General function prediction only].	1.65798e-59
NC_009792.1\|WP_012132815.1\|1822782_1823424_-\|penicillin-binding-protein-activator-LpoB	gnl\|CDD\|225951	COG3417, FlgN, Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only].	9.7462e-82

>NC_009792.1|WP_012132801.1|1812059_1815506_+|transcription-repair-coupling-factor
MPEQQRYTLPTKPGDQRQLGELTGAACATLVAEIAERHAGPIVLIAPDMQNALRLHDEVRQFTDQLVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQRGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQRTLEEVDAINLLPAHEFPTDKTAIELFRSQWRDTFEVKRDAEHIYQQVSKGTLPAGIEYWQPLFFNEPLPPLFSYFPANTLLVNTGALENSAERFQADTLARFENRGVDPMRPLLPPESLWLRVDELFSELKRWPRIQLKTEHLPGKAANTNLGFQKLPDLAVQAQQKAPLDALRRFLESFNGPVIFSVESEGRREALGELLARIKISPKRILRLDEALDAGRYLMIGAAEHGFIDTQRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPGQPVVHLEHGVGRYAGMTTLEAGGIKGEYLMLTYANDARLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQSDVKLKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGQMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKNENELEELKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIEFAEKNHVNPTWLIGLLQKQPQHFRLDGPTRLKFIQDLAERKTRMDWVRQFMAQLEENAAA
>NC_009792.1|WP_012132800.1|1810856_1811930_+|acyltransferase-family-protein
MKQKELWINQIKGLCICLVVIYHSVITFYPHLTAFQYPLSEILTKCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGTCIDKRIWSIVWVLALWGVAQWLALSWLNHWLAPERDINNASNAAYAGSVGEFIHGMLTASTSLWYLYALVVYFVLCKVFSQWAKPLFVLFVLLSVTINFVPTPWWGMNSVIRNLPYYSLGAWFGATLMEWIKHVPLRRYAIAFAGIALLAVIAWLANVSLLLSLVSIVLIMKLFYQYEQRFGMRSSSLLNVIGSNTIAIYTTHRILVEAFSLTLIPKINGAAWSPQLEFALLLVYPFASLLICTLTGLTVRKISQRLFADLFFSPPSLPAVTSYSR
>NC_009792.1|WP_024130430.1|1809395_1810595_-|lipoprotein-releasing-ABC-transporter-permease-subunit-LolC
MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSSEQGSLNPQQIPEKAVTLNGVNRIAPLTTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTSLEPGKYNVILGEQLAGQLGVNRGDQIRVMVPSASQFTPMGRLPSQRLFTVIGTFAANSEVDGYQMLTNIQDASRLMRYPAGNITGWRLWLNEPLKVDTLSQQTLPEGTKWQDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGALLGAVLGALLASQLNNLMPIIGAFLDGAALPVAIEPLQVVVIALVAMAIALLSTLYPSWRAAATQPAEALRYE
>NC_009792.1|WP_012132798.1|1808701_1809403_-|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD
MNKILLQCDNLCKRYQEGSVQTDVLHDVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFSGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEITERAREMLQAVGLDHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRAQGTAFLVVTHDLQLAKRMSRQLEMRDGLLTAELSLMGAE
>NC_009792.1|WP_024130429.1|1807457_1808702_-|lipoprotein-releasing-ABC-transporter-permease-subunit-LolE
MASPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVGLSAMNGFERELNNRILAVVPHGEIEAVNQPWTHWREALEKVQHVQGIAAAAPYINFTGLVESGANLRAIQVKGVDPKQEQRLSALPSFVQNHAWDNFRAGEQQIIIGKGVADALKVKQGDWVSIMIPNASADHKLQQPKRVRLHVTGILQLSGQLDHSFAMIPMEDAQQYLDMGASVSGIAIKVNDVFNANKLVRDAGEVTDSYVYIKSWIGTYGYMYHDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLLGSLCGVAIGVVVSLQLTPIIEGIEKLIGHQFLSGDIYFIDFLPSELHWLDVIYVLVTALLLSLLASWYPARRASNIDPARVLSGQ
>NC_009792.1|WP_012132796.1|1806513_1807425_-|N-acetylglucosamine-kinase
MYYGFDIGGTKIALGVFDNERRLRWEKRVPTPREGYEAFLTAVCDLVAEADQRFDVKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVLNGKPITGCSYITGEFGHMRLPVDALTLMGFDFPLRRCGCGQLGCIENYLSGRGFAWLYQHYYHQPLQAPEIIALWEQGDERARAHVERYLDLLAVCLGNILTIVDPDLVVIGGGLSNFTAITTQLADRLPRHLLPVARVPRIERARHGDAGGMRGAAFLHLTD
>NC_009792.1|WP_024130428.1|1805676_1806498_-|NAD-dependent-protein-deacylase
MQSRRAHRLSRFRKNKRHLRERLRQRIFFRDRVVPEMMEKPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQSFYNARRQQLQRPEIQPNPAHVALAKLEEALGDRFLLVTQNIDNLHERAGNKNIIHMHGELLKVRCSQSGQILDWTGDVTSDDKCHCCQFPASLRPHVVWFGEMPLGMDEIYMALAMADVFIAIGTSGHVYPAAGFVHEARLHGAHTVELNLEPSQVGSEFEEKYYGPASQVVPAFIEKLLKGL
>NC_009792.1|WP_012132794.1|1804528_1805575_+|spermidine/putrescine-ABC-transporter-substrate-binding-protein-PotD
MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLEQFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKTKLTNFHNLDPEMLNKPFDPNNDYSIPYIWGATAIGVNSDEIDPKTVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMVWNGSAYVARQAGTPLEVIWPKEGGIFWMDSLSIPANAKNKEGALKLINFLLRPDVAKEVAETIGYPTPNLAARKLLSPEVANDKSLYPDADTINKGEWQNDVGSASAIYEEYYQKLKAGR
>NC_009792.1|WP_012132793.1|1803724_1804504_+|spermidine/putrescine-ABC-transporter-permease-PotC
MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTTNWYSLLMNNDSLLQAAQHSLTMAVFSATFATIIGSLTAVALYRYRFRGKPFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKIYSMVKVGVSPEVNALATILLVLSLVMVIASQLIARDKTKGR
>NC_009792.1|WP_012132792.1|1802870_1803728_+|spermidine/putrescine-ABC-transporter-permease-PotB
MKNTSKFQNVVIVTVVGWLVLFVFLPNLMIIGTSFLTRDDANFVKMVFTLDNYARLLDPLYFEVLLHSLNMALIATFASLVLGYPFAWFLAKLPEKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPGAVIIGLVYILLPFMVMPLYSSIEKLDKPLLEAARDLGAGKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASRLLNKKVELE
>NC_009792.1|WP_024130431.1|1815795_1816761_+|L,D-transpeptidase-family-protein
MMNNMRLSRWLAFFTLAASVALAIPAQANTWPLPPPGSKLVGENTFHVVENNGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIDLPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNIINTPIKASVEPGGMRLVEVHQPLSKNIDDDPQILPIVLNGQMQAFKDAAQTDAAVMEHVMEVRSGMPVDVTRHPGITQQSM
>NC_009792.1|WP_012132806.1|1816840_1817098_-|DUF1471-domain-containing-protein
MKNVKTLIAAAVLSSLSFASFAAVEVQATPADQQKVGTISATAGTNLGSLEDQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK
>NC_009792.1|WP_024130432.1|1817338_1817974_+|TetR-family-copper-responsive-transcriptional-repressor-ComR
MTTDSTGCVKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGLFRAVLDRYISRFAAKHEAQLFCEEKSVESALEDYFTAVATCFTSKDTPAGCFMINTSATLAASSREIAHTVKSRHAMQEQTLTQFLRQRQERGEIPAHCNPQTLAEYLNCILQGMSISAREGATFDKLMQITRTTLRLWPEMLKA
>NC_009792.1|WP_024130433.1|1818047_1818587_-|glycine-zipper-2TM-domain-containing-protein
MNKSMLAGIGIGVAAALGVAAVASLNVFDRSPKYAQVVSATPIKETVKTPRQECRNVTVTHRKPVQDENRIAGSVLGAVAGGVIGHQFGGGRGKDVATVVGALGGGYAGNQIQGSMQENDTYTSTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDKDPGTQIPLDNNGQLILNNDA
>NC_009792.1|WP_024130434.1|1818822_1820127_-|NADH-quinone-dehydrogenase
MTTPLKKIVIVGGGAGGLEMATQLGKKLGRKKKAKITLVDRNHSHLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVMDIDREAKTITIAELRDEKGELLVPERKIAYDTLVMALGSTSNDFNTPGVKEHCIFLDNPHQARRFHQEMLNLFLKYSSSMGVSGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERILPALPPRISAAAHSELTKLGVRVLTQTMVTSADEGGLHTKDGEHIKADLMVWAAGIKAPDFLKDIGGLETNRINQLVVEPTLQTTRDPDVYAIGDCASCARPEGGFVPPRAQAAHQMASCALNNILAQMKGKPMKDYVYKDHGSLVSLSNFSTVGSLMGNLMRGSMMVEGRIARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH
>NC_009792.1|WP_012132812.1|1820375_1820918_-|alpha/beta-hydrolase
MIIYLHGFDSNSPGNHEKVLQLQFIDSDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDDRPLICGVGLGGYWAERIGFLCDIRQVVFNPNLFPYENMEGKIDRPEEYADIATKCVTNFREKNRDRCLVILSRHDEALDSHRSAKELHHFYEIVWDEEQTHKFKNISPHLQRIKAFKTLG
>NC_009792.1|WP_024130435.1|1820941_1821967_-|beta-N-acetylhexosaminidase
MGPVMLDVEGFELDAEEREILAHPLVGGLILFTRNYHDPEQLRELVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFAALHGLEEGGKLAQDAGWLMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPLKALAMATRFIDGMHAAGMKTTGKHFPGHGAVTADSHKETPTDPRPEAEIRARDMSVFRSLITGNKLDAIMPAHVIYSDVDPRPASGSPHWLKTVLREELGFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMILVCNNRKGAVSVLDNLSPINAERVTRLYHKGSFSRQELMDSARWKTVSAQLNQLHERWQEEKAGH
>NC_009792.1|WP_024130436.1|1821977_1822802_-|thiamine-kinase
MQSSNNNLLTRDDVLSRYFPQYHPVAACHNGLSGGSCIIEHDARRLVLRCHHDPFAPESDFLRQYHALSRLPETLAPRPRFYIPGWMAVDYLQGEVKSGLPDTDELAGLLYHLHQQPRFGWRISLLPLLMRYWQGSDPARRTPYWLRMLKRLRAVREPRPLRLAPLHMDVHGDNLVQTASGLRLIDWEYAGDGDIALELAAVWVEDERQHQRLVRSYAAVAHICPQTLWRQVRLWRPWVMMLKAGWFEYRWQQTGEQQFIRLADDDWRQLKKKG
>NC_009792.1|WP_012132815.1|1822782_1823424_-|penicillin-binding-protein-activator-LpoB
MMKMNRYALVAALAIFLSGCVGQREPAPVDEVKPAPEQPAEPQQPVPVVPSVPTIPQQPGPIEHEDQTAQPAPRVRHYDWNSAMQPMVGKMLQADGVTAGNVLLVDSVNNRTNGSLNAGEATETLRNALANNGKFTLVSAQQLAMAKQQLGLSPQDSLGTRSKAIGIARNVGAQYVLYSSAAGNVNAPSLQMQLMLVQTGEIIWSGKGAVQQQ
>NC_009792.1|WP_024130437.1|1823437_1823812_-|YcfL-family-protein
MTRGCLAMSLALLLLAGCRSHPEIPVSDEQTLVMESTLLAAGITAEAPALTTFDIQPSASSRLYNERQEPVTVHYRFYWYDARGLEMHPLEAPRSVTIPARSSVTLYGSANYLGAHKVRLYLYL

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Crispr_ID: NC_009792_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009792_7

1999531-1999680

Orphan

Consensus_repeat	Method
TGCCGGATGGCGACGCAAAGCGTCTTATCCGGCCTACGGAGTCACGGGAGCATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009792_7

>merge|NC_009792|7|1999531-1999680|CRISPRCasFinder
TGCCGGATGGCGACGCAAAGCGTCTTATCCGGCCTACGGAGTCACGGGAGCATACCTGTAGGCCTGATAAGCGTAGCGCCATCAGGCGCTGCTTTATGCCGGATGGCGACGCGAAGCGTCTTATCCGGCCTACGGAGTCACGGGAGCATA

>NC_009792|7|7|1999531-1999680|CRISPRCasFinder
TGCCGGATGGCGACGCAAAGCGTCTTATCCGGCCTACGGAGTCACGGGAGCATA	CCTGTAGGCCTGATAAGCGTAGCGCCATCAGGCGCTGCTTTA
TGCCGGATGGCGACGCGAAGCGTCTTATCCGGCCTACGGAGTCACGGGAGCATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009792.1\|WP_012133023.1\|2008846_2011129_+\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NC_009792.1\|WP_012133002.1\|1988010_1989333_-\|chromosome-partition-protein-MukF	unknown	unknown	gnl\|CDD\|179980
NC_009792.1\|WP_024130477.1\|2005768_2007529_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|132588
NC_009792.1\|WP_012133025.1\|2012139_2013288_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|179614
NC_009792.1\|WP_012133013.1\|1997067_1999332_-\|ComEC-family-protein	unknown	unknown	gnl\|CDD\|236924
NC_009792.1\|WP_012133008.1\|1992055_1992802_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|235473
NC_009792.1\|WP_012133009.1\|1992798_1992981_-\|protein-YcaR	unknown	unknown	gnl\|CDD\|183328
NC_009792.1\|WP_012133020.1\|2004270_2005359_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	unknown	unknown	gnl\|CDD\|235428
NC_009792.1\|WP_012133003.1\|1989336_1990116_-\|tRNA-uridine-5-oxyacetic-acid(34)-methyltransferase-CmoM	unknown	unknown	gnl\|CDD\|182918
NC_009792.1\|WP_012133018.1\|2002051_2002735_-\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NC_009792.1\|WP_012133019.1\|2002916_2004200_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NC_009792.1\|WP_012133006.1\|1991007_1991901_-\|YcbJ-family-phosphotransferase	unknown	unknown	gnl\|CDD\|182575
NC_009792.1\|WP_024130479.1\|2011320_2012061_+\|pyruvate-formate-lyase-1-activating-protein	unknown	unknown	gnl\|CDD\|182994
NC_009792.1\|WP_000167332.1\|1999822_2000107_-\|integration-host-factor-subunit-beta	unknown	unknown	gnl\|CDD\|178925
NC_009792.1\|WP_012133016.1\|2000264_2001938_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235775
NC_009792.1\|WP_012133012.1\|1995282_1997031_-\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	unknown	unknown	gnl\|CDD\|183016
NC_009792.1\|WP_012133011.1\|1994308_1995286_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|234808
NC_009792.1\|WP_012133010.1\|1993032_1994265_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225755
NC_009792.1\|WP_024130478.1\|2007934_2008795_+\|formate-transporter-FocA	unknown	unknown	gnl\|CDD\|182746
NC_009792.1\|WP_012133005.1\|1990251_1991031_+\|envelope-biogenesis-factor-ElyC	unknown	unknown	gnl\|CDD\|236702

Protein	Function_ID	Function_description	E-value
NC_009792.1\|WP_012133023.1\|2008846_2011129_+\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NC_009792.1\|WP_012133002.1\|1988010_1989333_-\|chromosome-partition-protein-MukF	gnl\|CDD\|179980	PRK05260, PRK05260, chromosome partition protein MukF.	0
NC_009792.1\|WP_024130477.1\|2005768_2007529_+\|hypothetical-protein	gnl\|CDD\|132588	TIGR03549, TIGR03549, YcaO domain protein. This family consists of remarkably well-conserved proteins from gamma and beta Proteobacteria, heavily skewed towards organisms of marine environments. Its gene neighborhood is not conserved. This family has an OsmC-like N-terminal domain. It shares a YcaO domain, frequently associated with ATP-dependent cyclodehydration for peptide modification. The function is unknown. Fifteen of the first sixteen members of this family are from selenouridine-positive genomes, but this correlation may not be meaningful.	0
NC_009792.1\|WP_012133025.1\|2012139_2013288_-\|MFS-transporter	gnl\|CDD\|179614	PRK03633, PRK03633, putative MFS family transporter protein; Provisional.	0
NC_009792.1\|WP_012133013.1\|1997067_1999332_-\|ComEC-family-protein	gnl\|CDD\|236924	PRK11539, PRK11539, ComEC family competence protein; Provisional.	0
NC_009792.1\|WP_012133008.1\|1992055_1992802_-\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|235473	PRK05450, PRK05450, 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional.	5.2548e-157
NC_009792.1\|WP_012133009.1\|1992798_1992981_-\|protein-YcaR	gnl\|CDD\|183328	PRK11827, PRK11827, protein YcaR.	4.66652e-37
NC_009792.1\|WP_012133020.1\|2004270_2005359_-\|3-phosphoserine/phosphohydroxythreonine-transaminase	gnl\|CDD\|235428	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase.	0
NC_009792.1\|WP_012133003.1\|1989336_1990116_-\|tRNA-uridine-5-oxyacetic-acid(34)-methyltransferase-CmoM	gnl\|CDD\|182918	PRK11036, PRK11036, tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM.	0
NC_009792.1\|WP_012133018.1\|2002051_2002735_-\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	2.37842e-133
NC_009792.1\|WP_012133019.1\|2002916_2004200_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NC_009792.1\|WP_012133006.1\|1991007_1991901_-\|YcbJ-family-phosphotransferase	gnl\|CDD\|182575	PRK10593, PRK10593, hypothetical protein; Provisional.	0
NC_009792.1\|WP_024130479.1\|2011320_2012061_+\|pyruvate-formate-lyase-1-activating-protein	gnl\|CDD\|182994	PRK11145, pflA, pyruvate formate lyase 1-activating protein.	0
NC_009792.1\|WP_000167332.1\|1999822_2000107_-\|integration-host-factor-subunit-beta	gnl\|CDD\|178925	PRK00199, ihfB, integration host factor subunit beta; Reviewed.	1.76901e-65
NC_009792.1\|WP_012133016.1\|2000264_2001938_-\|30S-ribosomal-protein-S1	gnl\|CDD\|235775	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.	0
NC_009792.1\|WP_012133012.1\|1995282_1997031_-\|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA	gnl\|CDD\|183016	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA.	0
NC_009792.1\|WP_012133011.1\|1994308_1995286_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|234808	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed.	0
NC_009792.1\|WP_012133010.1\|1993032_1994265_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|225755	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_009792.1\|WP_024130478.1\|2007934_2008795_+\|formate-transporter-FocA	gnl\|CDD\|182746	PRK10805, PRK10805, formate transporter; Provisional.	0
NC_009792.1\|WP_012133005.1\|1990251_1991031_+\|envelope-biogenesis-factor-ElyC	gnl\|CDD\|236702	PRK10494, PRK10494, envelope biogenesis factor ElyC.	0

>NC_009792.1|WP_012133013.1|1997067_1999332_-|ComEC-family-protein
MKITTVSVCALCGILPLIFLPVLPGSLCLIGIFCFACALSFVPYKYTQYASLTLLFFLWGILAAKQAVWPGNTLPGATQEAVVQITATDHATTHYGQITHVQGKRLFPSVGVVLYGQYLPGEVCAGQRWAMKLKVRAVHGQLNEGGFDSQRYALAQHQPLSGRFLHATVIESSCSLRARYLASLNTTLARYPWQQVILALGMGERLSVSQEVKNIMRDTGTAHLMAISGLHIAFAALLAGGLIRGAQFLLPTRWIHWQTPLVGGIVCATFYAWLTGLQPPALRTVVALAAWGLLKLSGRQWSGWEVWFCCLAAIVIADPIAVLSQSLWLSAFAVAALIFWYQWFPVPAWALPRAGKVALDLVHLQLGITLLLLPVQIALFHGVSVTSFLANLFAVPLVTFISVPLTLAGMIGHLTGPLMVEEGLWALADASLDVLFRALKSLPEGWINIDYRWQYLSLAPWLTLMAWRLNAWRTYPVICLFGVLLLSWPFWRTPRTEAWQVHMLDVGQGLAMVIAHNGKAILYDTGRAWPDGDSAQQLIIPWLRWHNLEPEGIILSHEHLDHRGGLSSLQKTWPSLWIRSPLGWKGHLPCFRAEQWTWQGLSFSAHWPIKGNREKGNNHSCVVKVDDGKQSILLTGDIESPAEQKMLSRYWRHLQATIIQVPHHGSNTSSSLALIQRVEGLAALASASRYNAWRLPSWKVKQRYQQQGYQWLDTPHQGQISVDFSPQGWRIRGLREQILPRWYHQWFGVSEDNG
>NC_009792.1|WP_012133012.1|1995282_1997031_-|lipid-A-ABC-transporter-ATP-binding-protein/permease-MsbA
MHNDKDLSTWQTFRRLWPTIAPFKTGLIVAGVALILNAASDAFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIALFIMMFYNSWQLSIILVILAPVVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIERSTGDLEFRNVTFTYPGRETPALRNINLHIPAGKTVALVGRSGSGKSTIASLITRFYDINEGNILMDGHDLREYTLSSLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFISKMDDGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQSALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHRELLEQRGVYSQLHKMQFGQ
>NC_009792.1|WP_012133011.1|1994308_1995286_-|tetraacyldisaccharide-4'-kinase
MIARIWSGESPLWRLLLPLSWLYGLVSGGIRLCYRLGIKRAWRAPVPVVVVGNLTAGGNGKTPVVIWLVEQLQQRGIRVGVVSRGYGGKAASYPLLLTPQTSSAEAGDEPVLIYQRTGAPVAVSPVRSDAVKAILARHDVQIIVTDDGLQHYRLARDIEIVVIDGVRRFGNGWWLPAGPMRERASRLKSVDAVIVNGGVARPGEIPMQLAPGLAVNLCTGERRHVAELSNIVAMAGIGHPPRFFATLEACGASLQKCVPLADHQSLAFNDVKALVTDGQTLVMTEKDAVKCRGFAEDNWWYLPVDARLSGEQPDALLEQLISLAR
>NC_009792.1|WP_012133010.1|1993032_1994265_-|winged-helix-turn-helix-domain-containing-protein
MSLPHLSLTDVRHLHLAAQGLLKKPRRQALPADILATISRMSLLQIDTVNVVARSPYLVLFSRLGHYPQQWLDDSLSRGELMEYWAHEACFLPRSDFTLIRHRMLAPEKMGWKYKASWMQEHADEIAQLIQHIHHNGPVRSADFAHPRKGASGWWEWKPHKRHLEGLFTAGKVMVVERRNFQRVYDLTQRVMPHWDDKRDLLSQAEAEIAMLDNSARSLGIFREQWLADYYRLRRPEVKTWRDIRVEQGQLVPVQADRLGAMWLHADLLPLLEQALNNKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQLVGRMDAKMHRKTGVLEVISLWLQEGVKPGPTLQKGLLQAINAFARWQQASRVTLGNCPSALFAENRHGWEIDAVS
>NC_009792.1|WP_012133009.1|1992798_1992981_-|protein-YcaR
MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLLETEARSITADESKS
>NC_009792.1|WP_012133008.1|1992055_1992802_-|3-deoxy-manno-octulosonate-cytidylyltransferase
MSFVVIIPARFSSTRLPGKPLLDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEPMIPAVIIRQVAENLAQRQVGMATLAAPIHGAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAKSLETVGDTFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAKEVPGTGVDTAEDLERVRAEMR
>NC_009792.1|WP_012133006.1|1991007_1991901_-|YcbJ-family-phosphotransferase
MEQLRAELSHLLGEKLSRIECVSEKADTALWSLYDSQGNPMPLMARSFTTPGVAQQLAWKTTMLARSGTVRMPVVYGVMTHEEHPGPDVLLLERLRGVSVEAPARTPERWEQLKDQIVEGLLAWHRQDSRGCVGAVDHTQENIWPSWYRQRVEVLWTTLNQFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFSLRSMLKDARSDQLLAMVGPGVMLWAPREYELFRLMDNALAEGLLWHYLQHAPVAESFIWRRWLYVLWDEVAQLVNTGRFSRSNFDLATKSLLPWLA
>NC_009792.1|WP_012133005.1|1990251_1991031_+|envelope-biogenesis-factor-ElyC
MLFTLKKVTGGLLLPLPFMLLIMGVGLALVWFSRFQKTGKAFISLGWLAIFLLSLQPVADRLLKPIEDSYPTWQGTQKVDYIVVLGGGYTWNPQWAPSSNLINNSLPRLNEGVRLWLANPGSKLIFTGAAAKTNRVSTAEAGARVAQSLGVPRSDIITLDQPKDTEEEAEAVKQAIGDAPFLLVTSASHLPRAMIFFQHVGLHPLPAPANQLAIDSPLNPWERAIPSPVWLMHSDRAGYETLGRIWQWLKGASGEPGQQ
>NC_009792.1|WP_012133003.1|1989336_1990116_-|tRNA-uridine-5-oxyacetic-acid(34)-methyltransferase-CmoM
MRDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRLLAEFGEQKLHILDAGGGEGQTAIRMAERGHQVTLCDLSGEMIARAQQAAEAKGVSGNMHFIQCAVQDVASHLETSADLILFHAVLEWVAEPVGVLETLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQVGMPKRKKRTLSPDYPRKPEQVYQWLEDIGWQITGKTGVRVFHDYLREKHQQRDCYEMLVELETRYCRQEPYISLGRYIHVTARKPQMQG
>NC_009792.1|WP_012133002.1|1988010_1989333_-|chromosome-partition-protein-MukF
MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLDGEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYRLTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAADEGGDEFHWHRNVYAPLKYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQDATMAHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYDRHVHKFIRTAIDMDKNRVFAQRLRQSIQGYFDEPWALTYANADRLLDMRDEEMALRDEEVTGELPPDLEYEEFNEIREQLAAIIEEQLAIYKSRQAPLDLGLVVREYLAQYPRARHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY
>NC_009792.1|WP_000167332.1|1999822_2000107_-|integration-host-factor-subunit-beta
MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIEIRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG
>NC_009792.1|WP_012133016.1|2000264_2001938_-|30S-ribosomal-protein-S1
MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDIVLVDAGLKSESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE
>NC_009792.1|WP_012133018.1|2002051_2002735_-|(d)CMP-kinase
MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVTSEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRDAPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTRLSIEQVIEKALQYARQKLALA
>NC_009792.1|WP_012133019.1|2002916_2004200_-|3-phosphoshikimate-1-carboxyvinyltransferase
MESLTLQPIARVDGTINLPGSKSVSNRALLLAALASGTTVLTNLLDSDDVRHMLNALSALGVSYTLSADRTRCEITGQGGVLHAEGALELFLGNAGTAMRPLAAALCLGANDIVLTGEPRMKERPIGHLVDALRQGGAKIDYLEQENYPPLRLRGGFSGGHVEVDGSVSSQFLTALLMTAPLAPQDTTIAIKGDLVSKPYIDITLNLMKTFGVEVENQNYQRFVVKGEQQYRSPGQYLVEGDASSASYFLAAGAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATITWGDDFIACTRGELNAVDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEVEEGHDFIRITPPAQLQFAEIGTYNDHRMAMCFSLVALSDTPVTILDPKCTAKTFPDYFEQLARISTPA
>NC_009792.1|WP_012133020.1|2004270_2005359_-|3-phosphoserine/phosphohydroxythreonine-transaminase
MAQVFNFSSGPAMLPAEVLKLAQQDLRDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLSIPSNYKVLFCHGGGRGQFAAIPLNILGDKTSADYVDAGYWAASAIKEAKKYCSPNVIDAKVTVDGLRAVKPMSEWQLSDNAAYVHYCPNETIDGIAIDETPNFGSDVVVAADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMNKINQQKAELLYGVIDNSDFYRNDVAKSNRSRMNVPFQLADSALDKVFLEESFAAGLHALKGHRVVGGMRASIYNAMPLEGVKALTDFMVDFERRHG
>NC_009792.1|WP_024130477.1|2005768_2007529_+|hypothetical-protein
MTQTFIPGKDAALEDSIARFQQKLLDLGFHIEEASWLNPVPNVWSVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVHYPNEKWFPLTDDDALPEGLLDDRLRAFYDPENELAGSMLIDLQSGNEDRGICGLPFTRQSDNHTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERHVKNRIIAESISLPEIPADVLARYPAVVEAIAKLEAEGFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDLFKQDADYPFADWSFSGTTEEEFATLMAIFNAEDKEVYIADYEHLGVYACRIIVPGMSDIYPAEDLWLANNSMGSHLRETLLALPGSAWEKEAYLNLIEQLDEEGFDDFTRVRELLGLATGPDNGWYTLRIGELKAMLALAGGDLEQALIWTEWTMEFNASIFSAERANYYRCLQTLLLLAQEEDREPLQYLNAFVRMYGAEAVEAASAALSGEAAFYGLQAVDSDLHAFASHQSLLKAYEKLQRAKAAHWSK
>NC_009792.1|WP_024130478.1|2007934_2008795_+|formate-transporter-FocA
MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVFISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVICGADLFTSTVLIVVAKASGRITWGQLAKNWLNVYFGNLIGCLLFVLLMWLSGEYMTANGGWGLNVLQTADHKMHHTFIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIPMGIVIRDFATPEFWAAVGSSPESFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWVIYLRGDDHHC
>NC_009792.1|WP_012133023.1|2008846_2011129_+|formate-C-acetyltransferase
MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFLAGATNATTALWDSVMEGVKQENRTHAPVDFDTSVASTITSHDAGYINKALEKIVGLQTEAPLKRAIIPFGGIKMVEGSCKAYNRELDPMLKKIFTEYRKTHNQGVFDVYTKDILNCRKSGVLTGLPDAYGRGRIIGDYRRVALYGIDFLMKDKYAQFVSLQSDLENGVNLEATIRLREEIAEQHRALGQIKEMAAKYGCDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMSFGRVSTFLDAYIERDIKAGKITEQDAQEMIDHLVMKLRMVRFLRTPEYDELFSGDPIWATESIGGMGVDGRTLVTKNSFRFLNTLYTMGPSPEPNITVLWSEKLPLNFKKFAAKVSIDTSSLQYENDDLMRPDFNNDDYAIACCVSPMVVGKQMQFFGARANLAKTMLYAINGGVDEKLKMQVGPKSEPIKGDVLNFDEVMDRMDHFMDWLAKQYVTALNVIHYMHDKYSYEASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAVDFEIEGEYPQFGNNDSRVDDMAVDLVERFMKKIQKLTTYRGAIPTQSVLTITSNVVYGKKTGNTPDGRRAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVRKTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMEHPEKYPQLTIRVSGYAVRFNSLTKEQQQDVITRTFTQTM
>NC_009792.1|WP_024130479.1|2011320_2012061_+|pyruvate-formate-lyase-1-activating-protein
MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKESIHTCLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYISAKGIKTWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVMY
>NC_009792.1|WP_012133025.1|2012139_2013288_-|MFS-transporter
MSIYTRPVMLLLCGLLLLTLAIAVLNTLVPLWLAQESLATWQVGMVSSSYFTGNLVGTLLTGYLIKRLGFNRSYYIASLIFAAGCVGLGMMIGFWSWLAWRFVAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVPTELMSVLPWVTGMILAGILPLLFTRILNQQSEEHDTTPITSMLRLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGISNASIGFWMAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVILGSIAMLTQAAMAPALFILGAAGFTLYPVAMAWACEKVERHQLVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFVYLLMLLRNAGHTPTPVAHV

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Crispr_ID: NC_009792_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009792_8

2033031-2033240

Unclear

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAACA	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAACA	CRT
TTTCTAAGCTGCCTGTACGGCAGTGAACA	PILER-CR

3 spacers

cas6f

The CRISPR arrays of NC_009792_8

>merge|NC_009792|8|2033031-2033240|CRISPRCasFinder,CRT,PILER-CR
ATACTGAACTGCCTGTACGGCAGTGAACGAAACGCTACGGCGAACAACGGTGATCAACTTTTTCTAAGCTGCCTGTACGGCAGTGAACAACTTGGCGTGCTGATGGGCGAAGTTCTGCGATTTCTAAGCTGCCTGTACGGCAGTGAACACAGTGTAATTCAGGTTCGACGCTGGTTTAACGTTTCTAAGCTGCCTGTACGGCAGTGAACA

>NC_009792|8|8|2033031-2033240|CRISPRCasFinder
ATACTGAACTGCCTGTACGGCAGTGAACG	AAACGCTACGGCGAACAACGGTGATCAACTT
TTTCTAAGCTGCCTGTACGGCAGTGAACA	ACTTGGCGTGCTGATGGGCGAAGTTCTGCGA
TTTCTAAGCTGCCTGTACGGCAGTGAACA	CAGTGTAATTCAGGTTCGACGCTGGTTTAACG
TTTCTAAGCTGCCTGTACGGCAGTGAACA

>NC_009792|8|1|2033031-2033240|CRT
ATACTGAACTGCCTGTACGGCAGTGAACG	AAACGCTACGGCGAACAACGGTGATCAACTT
TTTCTAAGCTGCCTGTACGGCAGTGAACA	ACTTGGCGTGCTGATGGGCGAAGTTCTGCGA
TTTCTAAGCTGCCTGTACGGCAGTGAACA	CAGTGTAATTCAGGTTCGACGCTGGTTTAACG
TTTCTAAGCTGCCTGTACGGCAGTGAACA

>NC_009792|8|1|2033091-2033240|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAACA	ACTTGGCGTGCTGATGGGCGAAGTTCTGCGA
TTTCTAAGCTGCCTGTACGGCAGTGAACA	CAGTGTAATTCAGGTTCGACGCTGGTTTAACG
TTTCTAAGCTGCCTGTACGGCAGTGAACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009792.1\|WP_012133041.1\|2031682_2032387_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NC_009792.1\|WP_012133038.1\|2027067_2028036_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NC_009792.1\|WP_012133051.1\|2040248_2042195_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NC_009792.1\|WP_080516655.1\|2036340_2036670_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|187870
NC_009792.1\|WP_024130482.1\|2021242_2021854_-\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NC_009792.1\|WP_012133046.1\|2034404_2035271_+\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NC_009792.1\|WP_012133052.1\|2042191_2043307_-\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
NC_009792.1\|WP_012133047.1\|2035292_2035970_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NC_009792.1\|WP_012133033.1\|2018504_2019797_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NC_009792.1\|WP_012133040.1\|2029916_2031638_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NC_009792.1\|WP_024130481.1\|2019888_2021232_-\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NC_009792.1\|WP_001040187.1\|2032671_2032890_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NC_009792.1\|WP_024130485.1\|2043455_2045114_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NC_009792.1\|WP_024130483.1\|2021976_2025891_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NC_009792.1\|WP_012133049.1\|2036939_2039216_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NC_009792.1\|WP_000228469.1\|2026025_2026520_-\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NC_009792.1\|WP_012133050.1\|2039246_2039567_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NC_009792.1\|WP_012133039.1\|2028149_2029916_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NC_009792.1\|WP_000447499.1\|2039890_2040112_+\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
NC_009792.1\|WP_012133045.1\|2033384_2034296_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|184959

Protein	Function_ID	Function_description	E-value
NC_009792.1\|WP_012133041.1\|2031682_2032387_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	2.07702e-140
NC_009792.1\|WP_012133038.1\|2027067_2028036_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NC_009792.1\|WP_012133051.1\|2040248_2042195_-\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NC_009792.1\|WP_080516655.1\|2036340_2036670_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	3.89484e-50
NC_009792.1\|WP_024130482.1\|2021242_2021854_-\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	8.07713e-121
NC_009792.1\|WP_012133046.1\|2034404_2035271_+\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	2.26054e-100
NC_009792.1\|WP_012133052.1\|2042191_2043307_-\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
NC_009792.1\|WP_012133047.1\|2035292_2035970_+\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	3.01602e-59
NC_009792.1\|WP_012133033.1\|2018504_2019797_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NC_009792.1\|WP_012133040.1\|2029916_2031638_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_009792.1\|WP_024130481.1\|2019888_2021232_-\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NC_009792.1\|WP_001040187.1\|2032671_2032890_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NC_009792.1\|WP_024130485.1\|2043455_2045114_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NC_009792.1\|WP_024130483.1\|2021976_2025891_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NC_009792.1\|WP_012133049.1\|2036939_2039216_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NC_009792.1\|WP_000228469.1\|2026025_2026520_-\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	1.61477e-117
NC_009792.1\|WP_012133050.1\|2039246_2039567_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	4.79395e-49
NC_009792.1\|WP_012133039.1\|2028149_2029916_+\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_009792.1\|WP_000447499.1\|2039890_2040112_+\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	5.83011e-48
NC_009792.1\|WP_012133045.1\|2033384_2034296_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|184959	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional.	0

>NC_009792.1|WP_001040187.1|2032671_2032890_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NC_009792.1|WP_012133041.1|2031682_2032387_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAILQPETLHISRSMKRFHKRSPYRVTLNYAFGQVIEGCANDRDEGTWITRDVVEAYHRLHELGHAHSIEVWRHNALVGGMYGVSQGTLFCGESMFSRQENASKTALLVFCAEFIRQGGKLIDCQVLNSHTASLGAVEIPRRQYLEHLGSLRQQRLPGHFWVPRTLFSPQA
>NC_009792.1|WP_012133040.1|2029916_2031638_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLTLYKRHKWMLTLGIILAIVTLLASIGLLTLSGWFLSASAVVGVAGIYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIHTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTLGLSVLDFTLAITLGGIMLLTLFIMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASSRYRAQMEATELQWHEAQRRQSELTALSQALMLLIGALAVMLMLWMASGGVGNNSQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITELTEQQPEVTFPDDEAAAPRQVTLTLRDVSFSYPEQPQKALDALSLQVAPGEHIAILGRTGCGKSTLLQLLTRAWDPQSGDILLNDQPISTLDEAALRRTISVMSQRVHLFSATLRDNLLLAAPDANDDTLSEMLRRVGLEKLLEDGGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESQMLELLAKVMRGKTVLMVTHRLRGLSRFDQIIVMDNGQIIEQGNHADLLARQGRYYQFKQRL
>NC_009792.1|WP_012133039.1|2028149_2029916_+|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKTRQKELTRWLKQQSVISQRWLNISRLLGFVSGVLIVAQAWIMARILQHMIMDNIPREALLLPFIVLMLVFVLRAWVVWLRERVGFHAGQHIRFEIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVCVPLLIVAAIFPSNWAAALILLGTAPLIPLFMAMVGMGAADANRRNFQALARLSGHFLDRLRGMETLRIFGRGEAETESIRVASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGELNFGHYGTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPERGDVELSGKEPVTLEAQDLIITSPEGKTLAGPLNFTLAAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLCINGVELRDLSPESWRKHLSWVGQNPQLPAGTLRENVLLARPDASEQALQAALDSAWVSEFLPLLSQGVDTPTGDHAGRLSVGQAQRVAVARALLNPCKLLLLDEPAASLDAHSEQRVMQALNAASKRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGDYAQLSSANGAFATLLAHRQEDI
>NC_009792.1|WP_012133038.1|2027067_2028036_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFDTEIIFDHINSVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLANIAAEVHLIHRRDGFRAEKILIKRLMDKVENGNIVLHTHRTLEEVTGDQMGVTGLRLRDTQNPDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSVPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADACK
>NC_009792.1|WP_000228469.1|2026025_2026520_-|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NC_009792.1|WP_024130483.1|2021976_2025891_-|DNA-translocase-FtsK
MSQEYTEDKEVTLKKLSSGRRLLEALLILIALFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGAPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSNDDYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTITLLCVWAAGLTLFTGWSWVSIAEKLGGWLLNILTFASNRTRRDDTWVDDDEYEDDDEYEDEAVGAQRESRRARILRGALARRKRLAEKFSNPRGRHTDAALFSGKRMDDEDDIEYSARGVAADPDDVLFSGHRATQPEYEEYDPLLNGHSVTEPVASAAAATTATQAWAAPVDPVMSAPSVPGAEAASAQPVVEWQPVPGPQTGEPVIAPAPESYPPQPQYAQPQAPHHEPWQQPAPTEPQAQYYAEHAYEQPVPQVQEPAAEQPWHPEPVYPQEPVYQHEPTFEPQSAYPQEPVQDTYYQQQPAVEPPSAVEPEPVAEEIKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPAKAPEPVKPSAPTAASVPPVESVAAVAPLAAGVKDATLAAGAAASAAPAFSPVSGGAPRPQVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRIAEEKARAAGRHQYDAETQYSDDEIDEMQQDELARQFAQSQQHRYGSEYQHDAPQAEDEDAAEAELARQFASSQQQRYAGEQPAGAHPFSLDDFEFSPMKALVDEGPHEPLFTPGVMPEQPVAPQQQYQQPQQPVAPQQQYQQPVAPQQQYQQPQQPVAPQQPYQQPQQPAAPQPQESLIHPLLMRNGDSRPLQKPTTPLPSLDLLTPPPSAVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRENPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKLMSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDAQHPVLEKLPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQGGAESLLGMGDMLYSGPNSTMPVRVHGAFVRDQEVHAVVQDWKARGRPQYIDGITSDSESEGGGGGFDGGEELDPLFDQAVSFVTEKRKASISGVQRQFRIGYNRAARIVEQMEAQGIVSEQGHNGNREVLAPPPFE
>NC_009792.1|WP_024130482.1|2021242_2021854_-|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSGFVVSSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFFNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKSSSGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNSAVDASKFTFTPPQGVTVDDQRK
>NC_009792.1|WP_024130481.1|2019888_2021232_-|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLTTEDIEQVLNQAMDDKARGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLLPALLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAISAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEPNAYAAGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR
>NC_009792.1|WP_012133033.1|2018504_2019797_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVNTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELESLQAEIRDIALTIPNLPADDVPVGKDENDNVEVSRWGTPREFDFDVRDHVTLGEMHAGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNHDTLYGTGQLPKFAGDLFHTRPLEEEADSSNYALIPTAEVPLTNLVRDEIIDEDALPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEESMDALEEMTGHAEKVLQLLGLPYRKIVLCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>NC_009792.1|WP_012133045.1|2033384_2034296_-|LysR-family-transcriptional-regulator
MTKPDLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEERLGVRLIQRTTRQFNVTEVGQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPVTLLHVHIGPMLAKFMARYPDVSLQLEATNRRVDVVGEGIDVAIRVRPRPFEDSDLVMRVLADRGHRLFASPALVQRMGNPSSPAELHHWPGLSLASGKHIHRWELFGPQGARAEVHFTPRLITTDMLALREAAVAGVGLVQLPVLMVKDQLAAGELVALLEGWEPRREVIHAVFPSRRGLLPSVRALVDFLTEEYARMVED
>NC_009792.1|WP_012133046.1|2034404_2035271_+|pirin-family-protein
MKQITGVYTAPRPHWVGDGFPVRSLFSYQSHAEQLSPFLLLDYAGPHTFAPGAENEKRGVGEHPHRGFETVTIVYSGEVEHRDSTGRGGVIGPGDVQWMTAGAGILHEEFHSSAFTQQGGKLEMVQLWVNLPAKDKMAVPGYQSISSDLIPAVTLPDEAGTARIIAGRYQDVKGPAHTFSPLNVWDMRLQRDRHLTLPVAEGWSTALVVLKGSITVNGTTPVNEAQLVVLSQEGENLYLEASSDASVLLLSGEPLNEPIVGYGPFVMNTKQEIAEAVRDFNSGRFGQI
>NC_009792.1|WP_012133047.1|2035292_2035970_+|isochorismatase-family-protein
MSSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRARAAALAKMATLSKMPVITTASVPQGPNGPLIPEIHANAPHAQYIARKGEINAWDNADFVQAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLARVVQAGVVPMDTAAVASELQGTWNREDAAEWAEVYTKVFPAYQLLIESYSKAQEVVKNGEILDSQR
>NC_009792.1|WP_080516655.1|2036340_2036670_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNDYCQCMAITPVPAVKGWRTVSRVQVKSSPQRLLRRSVRKGWLTEEQAQLRLVESTEQHSDLPYLNVKSLSNQQQFRVFIRHSELRSEPVSGTFTSYGLSSTATIPWF
>NC_009792.1|WP_012133049.1|2036939_2039216_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPSQSSDPGNQPNSEEQVGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTLYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSVDETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMGEIKKVFTPEFRNRLDNIIWFDHLSTEVIHQVVDKFIVELQVQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMTRVVQDNLKKPLANELLFGSLVGGGQVTVALDKEKNELTYGFQSAQKHKPEAAH
>NC_009792.1|WP_012133050.1|2039246_2039567_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NC_009792.1|WP_000447499.1|2039890_2040112_+|cold-shock-like-protein-CspD
METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASVIVPIEAEAVA
>NC_009792.1|WP_012133051.1|2040248_2042195_-|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTALLELSNIRRSYPSGEEQVEVLKGISLQIHAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRIAGRDVSTLDSDALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGTERKRRLERAEELLQRLGLGDRVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGDEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIHDGEIVRNPPSQKTQAGQGIAEPVVKTASGWSQFVSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRAIGTNTIDIYPGKDFGDDDPQYQQALKYDDLNVIQKQPWVTSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGNTFNREQLNGRAQVVVLDSNTRRQLFPNKAKVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAQAEQQLTRLLTLRHGKKDFFTWNMDGVLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGIGLSMLIAFTLQMFLPGWEIGFSPVALLTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>NC_009792.1|WP_012133052.1|2042191_2043307_-|macrolide-transporter-subunit-MacA
MKLKGKMKKRYILIALIIIVAMFTLWRTLNAPLPHYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRRQAEAEWKLARVTLSRQQQLAKTQAISRQELDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLRPGQKAWFTVLGDPQTRYEGALKDVLPTPEKVNDAIFYYARFEVPNPKGILRLDMTAQVHIQLTDIKNVLTIPLAALGDPVGNNRYKVTLLRNGETREREVSIGARNDTDVEIVKGLEEGDEVVISESKPGAAQ
>NC_009792.1|WP_024130485.1|2043455_2045114_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESELYHFIREDFWFPPGDLQGREHHLHIILTFRESQPGRHRVRRYRPLEACWSPCQDGFHRIFYRLEGESAADGSVMTLRSFLDGDGHPLPVDDINRQAHHLIRLMPVLRLRDARFMRRIRNGTVPDVPDVEVTACQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEHYFSEQGAGQSRHRLMRRRSNNEQRSWRYLDIINRMIDKPGGRTHRVILLGLFSTLLQAKGTLRLDKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRVATTNSGELLSLTPVEHVVRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFSRCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLRPLVKFARRMGIEWHVLVDGDEAGKKYAATVRGLLNNDREEEREHLTALPALDMEHFMYRSGFADVFHRVAQIPENVPMNMRKIISKAIHRSSKPDLAIEVAMEAGRRGVDAVPTLFKKMFSRVLWLARGRAD

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Crispr_ID: NC_009792_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009792_9

3969025-3969124

Orphan

Consensus_repeat	Method
TTTGTAGGCCGGATAAGGCGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009792_9

>merge|NC_009792|9|3969025-3969124|CRISPRCasFinder
TTTGTAGGCCGGATAAGGCGTTTACGCCGCCATCCGGCAATTTGCCCGGGACGCTGCGCTTGCCGGGCCTACGATGGTTTGTAGGCCGGATAAGGCGTTT

>NC_009792|9|9|3969025-3969124|CRISPRCasFinder
TTTGTAGGCCGGATAAGGCGTTT	ACGCCGCCATCCGGCAATTTGCCCGGGACGCTGCGCTTGCCGGGCCTACGATGG
TTTGTAGGCCGGATAAGGCGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009792.1\|WP_024130930.1\|3969955_3970591_-\|arginine-exporter-ArgO	unknown	unknown	gnl\|CDD\|236463
NC_009792.1\|WP_024130931.1\|3972624_3973497_-\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NC_009792.1\|WP_012135018.1\|3965766_3966999_-\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NC_009792.1\|WP_012135020.1\|3967267_3967963_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NC_009792.1\|WP_012135033.1\|3978106_3979012_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NC_009792.1\|WP_012135029.1\|3973591_3974854_-\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NC_009792.1\|WP_006686880.1\|3964499_3964829_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|182874
NC_009792.1\|WP_012135030.1\|3974870_3976532_-\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NC_009792.1\|WP_012135011.1\|3958337_3959432_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NC_009792.1\|WP_024130925.1\|3962403_3963729_-\|Xaa-Pro-aminopeptidase	unknown	unknown	gnl\|CDD\|182804
NC_009792.1\|WP_012135025.1\|3970787_3971645_-\|small-conductance-mechanosensitive-channel-MscS	unknown	unknown	gnl\|CDD\|182386
NC_009792.1\|WP_012135014.1\|3961228_3962407_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|235584
NC_009792.1\|WP_024130926.1\|3963754_3964333_-\|UPF0149-family-protein-YgfB	unknown	unknown	gnl\|CDD\|234976
NC_009792.1\|WP_047461402.1\|3965074_3965677_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
NC_009792.1\|WP_012135026.1\|3971774_3972707_-\|HTH-type-transcriptional-activator-AllS	unknown	unknown	gnl\|CDD\|182237
NC_009792.1\|WP_012135031.1\|3976545_3977769_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NC_009792.1\|WP_012135021.1\|3968085_3968979_+\|DNA-binding-transcriptional-regulator-ArgP	unknown	unknown	gnl\|CDD\|235144
NC_009792.1\|WP_012135022.1\|3969133_3969862_-\|oxidative-stress-defense-protein	unknown	unknown	gnl\|CDD\|236840
NC_009792.1\|WP_024130924.1\|3959883_3961086_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	unknown	unknown	gnl\|CDD\|236139
NC_009792.1\|WP_012135034.1\|3979145_3980225_-\|class-II-fructose-bisphosphate-aldolase	unknown	unknown	gnl\|CDD\|236406

Protein	Function_ID	Function_description	E-value
NC_009792.1\|WP_024130930.1\|3969955_3970591_-\|arginine-exporter-ArgO	gnl\|CDD\|236463	PRK09304, PRK09304, arginine exporter ArgO.	5.65685e-136
NC_009792.1\|WP_024130931.1\|3972624_3973497_-\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	3.31904e-35
NC_009792.1\|WP_012135018.1\|3965766_3966999_-\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NC_009792.1\|WP_012135020.1\|3967267_3967963_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	8.91769e-139
NC_009792.1\|WP_012135033.1\|3978106_3979012_+\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NC_009792.1\|WP_012135029.1\|3973591_3974854_-\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.88869e-132
NC_009792.1\|WP_006686880.1\|3964499_3964829_+\|cell-division-protein-ZapA	gnl\|CDD\|182874	PRK10972, PRK10972, cell division protein ZapA.	8.86586e-64
NC_009792.1\|WP_012135030.1\|3974870_3976532_-\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NC_009792.1\|WP_012135011.1\|3958337_3959432_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NC_009792.1\|WP_024130925.1\|3962403_3963729_-\|Xaa-Pro-aminopeptidase	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	0
NC_009792.1\|WP_012135025.1\|3970787_3971645_-\|small-conductance-mechanosensitive-channel-MscS	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	0
NC_009792.1\|WP_012135014.1\|3961228_3962407_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|235584	PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated.	0
NC_009792.1\|WP_024130926.1\|3963754_3964333_-\|UPF0149-family-protein-YgfB	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	1.26554e-121
NC_009792.1\|WP_047461402.1\|3965074_3965677_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	2.40116e-129
NC_009792.1\|WP_012135026.1\|3971774_3972707_-\|HTH-type-transcriptional-activator-AllS	gnl\|CDD\|182237	PRK10094, PRK10094, HTH-type transcriptional activator AllS.	0
NC_009792.1\|WP_012135031.1\|3976545_3977769_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.71244e-62
NC_009792.1\|WP_012135021.1\|3968085_3968979_+\|DNA-binding-transcriptional-regulator-ArgP	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	8.88787e-160
NC_009792.1\|WP_012135022.1\|3969133_3969862_-\|oxidative-stress-defense-protein	gnl\|CDD\|236840	PRK11087, PRK11087, oxidative stress defense protein; Provisional.	1.54017e-133
NC_009792.1\|WP_024130924.1\|3959883_3961086_-\|FAD-dependent-2-octaprenylphenol-hydroxylase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
NC_009792.1\|WP_012135034.1\|3979145_3980225_-\|class-II-fructose-bisphosphate-aldolase	gnl\|CDD\|236406	PRK09197, PRK09197, fructose-bisphosphate aldolase; Provisional.	0

>NC_009792.1|WP_012135021.1|3968085_3968979_+|DNA-binding-transcriptional-regulator-ArgP
MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENMFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEDEWLGDEQTGSTPLLLSLAVNADSLATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLGALDYLFVGSKPFAERYFPNGVTRSALLKAPAVAFDHLDDMHQAFLQQNFDLPPGSVPCHIVNSSEAFVQLARQGTTCCMIPHLQIEKELESGELIDLTPGLFQRRMLYWHRFAPESRMMRNVTDALLEYGHKVLRQD
>NC_009792.1|WP_012135020.1|3967267_3967963_-|ribose-5-phosphate-isomerase-RpiA
MRLNFHTTGETIMTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKGQIEGAVSSSDASTEKLKSLGITVFDLNEVDSLGVYVDGADEINGHMQMIKGGGAALTREKIIASVAKKFICIADASKEVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGVVTDNGNVILDVYGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTADGVKTIVK
>NC_009792.1|WP_012135018.1|3965766_3966999_-|phosphoglycerate-dehydrogenase
MAKVSLEKDKIKFLLVEGVHQKALENLRVAGYTNIEFHKGALDTEQLKESIRDAHFIGLRSRTHLTEDVIDAAEKLVAIGCFCIGTNQVDLNAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMHVFFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENASTKNMMGATEIALMKPGALLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLTKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNQIFAEQGVNIAAQYLQTSAQVGYVVIDIEADEDVAEKALLAMKALPGTIRARLLY
>NC_009792.1|WP_047461402.1|3965074_3965677_+|5-formyltetrahydrofolate-cyclo-ligase
MTQLPELLLSRQEIRQMIRQRRRTLTSQQQTAFGQQAATRMLAYPPVVLAHTVAVFLSFDGELDTQPLIEQLWRAGKRVYLPVLHPFSPGNLLFLHYHPQSSLVMNRLKIQEPKLDVRDVLPLSQLDVLVTPLVAFDEDGQRLGMGGGFYDRTLQNWRQHKIQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKVWEWPQ
>NC_009792.1|WP_006686880.1|3964499_3964829_+|cell-division-protein-ZapA
MSAQPVDIQIFGRSLRVNCPPEQRDALNQAADDLNQRLQDLKVRTRVTNTEQLVFIAALNISYELTQEKAKTRDYAASMEQRIRMLQQTIEQALLDQGRITEKTGQNFE
>NC_009792.1|WP_024130926.1|3963754_3964333_-|UPF0149-family-protein-YgfB
MSIQNEMPGYNEMNQFLNQQGTGLTPAEMHGLISGMICGGNNDSSWQPLLHDLTNEGLAFGHELAQALRKMHAATSDALEDDGFLFQLFLPEGDEVSVFDRADALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEEIIEYVRVAALLCHDTFTRQQPTAPEVQKPTLH
>NC_009792.1|WP_024130925.1|3962403_3963729_-|Xaa-Pro-aminopeptidase
MSDISQQEYQRRRQVLLAQMQPGSAALIFAAQEATRSADSEYPYRQSSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADEIVFAALDKLRKGSRQNLTAPATMTDWRPMVHEMRLFKSPEEIAVMRRAGEISALAHTRAMKKCRPGMFEYQLEGEIHHEFNRHGARYPSYNTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLASLETSLRLFRPGTSIQEVTGEVVRIMIAGLVNLGILQGDVEQLIAENAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRVLEPGMVLTVEPGLYIAPDADVPEAYRGIGIRIEDDIVITETGNENLTASVVKKADDIEALMAAARQL
>NC_009792.1|WP_012135014.1|3961228_3962407_-|2-octaprenyl-6-methoxyphenyl-hydroxylase
MSVIIVGGGMVGATLALALSQLSHGKLAVHLIEASAPEAAAHPGFDARAIALAAGTCQQLARIGVWQAIADCATAINTVHVSDRGHAGFVTLDAQDYSIAALGQVVELHDVGQRLFALLRKAPGVTLHCPDRVASVARTQEKVNVTLENGDVISGHVVVAADGTHSALATACGVDWQQQPYEQLAVIANVATATLHDGRAFERFTQHGPLAMLPMSEGRCSLVWCHPLEQRDEIMRWSDERFCHELQSAFGWRLGRITHAGKRSAYPLALTTAAKAITHRTVLVGNAAQTLHPIAGQGFNLGLRDVMSLAETLVQAHESGADVGEYGVLSEYQSRRQADREATVGITDSLVHLFANRWAPLVAGRNVGLMAMELLPPLRDTLAKRTLGWVAR
>NC_009792.1|WP_024130924.1|3959883_3961086_-|FAD-dependent-2-octaprenylphenol-hydroxylase
MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPQPLASDAPPALRVSAINAASEKLLTRLGVWSDILARRASCYHGMEVWDKDSFGRIEFDDKSMGYSHLGHIIENSVIHYALWQKAQQSADITLMAPAELQQVAWGENETFLTLKDGAMLTARLVIGADGANSWLRNKADIPLTFWDYRHHALVATIRTEEAHGAVARQAFHGEGILAFLPLSDPHLCSIVWSLSPQDAEHMQQASEDAFNRALNVAFDNRLGLCLVESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIDELKRLQRQGKDIGQYLYLRRYERSRKHSAAMMLAGMQGFRELFAGENPAKKLLRDIGLKLADTLPGVKPQLIRQAMGLNDLPEWLR
>NC_009792.1|WP_012135011.1|3958337_3959432_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHAVRTDAGMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVYYFTEDFFRLVVNSATREKDLSWITQHAEPYAIDITVRDDLSLIAVQGPNAQAKAATLFTEEQRKAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVESGVKPCGLGARDTLRLEAGMNLYGQEMDEGVSPLAANMGWTIAWEPADRDFIGREALEVQREKGTEQLVGLVMTEKGVLRNELPVRFTDAQGNQLEGVITSGTFSPTLGYSIALARVPAGIGETAIVQIRNREMPVKVTKPVFVRNGKAVA
>NC_009792.1|WP_012135022.1|3969133_3969862_-|oxidative-stress-defense-protein
MKFKVMALAALVGFSAIPVQANELPNGPHIVTSGTASVDATPDIATLAIEVNVSAKDAASAKKQADERVAQYLSFLEQNQIAKKDISSANLRTQPDYDYQNGKSVLKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKAAIDDAVHQAEQLAAGFNSKLGPVYSVRYHVSNYQPSPVVRMMKADAAPAVSAQETYEQPTIQFADQVDVVFQLEPAAETKAQ
>NC_009792.1|WP_024130930.1|3969955_3970591_-|arginine-exporter-ArgO
MISYYFQGFALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCAISDLVLICAGIFGGSALLMQSPWLMALVTWGGVAFLLWYGFGALKTAMSSNLELASAEVMKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLEMEPKRWFALGTVSASFLWFFGLALLAAWLAPRLRTAKAQRIINTLVGLVMWFIAFQLAKEGVAHVHALFN
>NC_009792.1|WP_012135025.1|3970787_3971645_-|small-conductance-mechanosensitive-channel-MscS
MEDLNVVDSINGAGTWLVRNQELLLSYAVNIVAAIAIIIIGMIVARIVSNTVNRLMLARHIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLNVQIFSTTMRTVDGKIVVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKKILTDIIQSDERILKDREMTVRLNELGASSINFVVRAWSKSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVNFKRVKENAE
>NC_009792.1|WP_012135026.1|3971774_3972707_-|HTH-type-transcriptional-activator-AllS
MLDQETIRTFIRVAETESFSRAASSLHKTPAAISYRIKTLEEQVGTQLFLRTTRSVSLTLAGQHLLEHCRQWLNWLDAMPDELQQINAGVERQVNIVINNLLYQPQTTADLLTWLHQQFPFTRFQISRQVYMGVWDSLLYDDFQLAIGVTGSESLSNNISLLPLGDVSWQFVVAQSHPLASHPAPVLSDDMLRRYPAINIEDTSRTLTRRVAWLLSGQKEIKVPDLSTKLACHLSGLGVGFLPERLCRPYVESGALVARSVVNPRQPSPLSIAWKNAGSGKVVSEIADVFKQKSALVSGFLRRVDRPAEY
>NC_009792.1|WP_024130931.1|3972624_3973497_-|DUF2877-domain-containing-protein
MSIINPLACAGLYRLPDGEWSLHSRFSQATNFCHSGGELLTLFRYGKGMGPTGVLLSTAQFSRVSHVERLIKQGNTLWGQGIMLDPRRILRVSLSSAAVAPVDLSFCTQRSGFSGALNQPLTAMPYYPEIIKQLACWHHGMMPDWRWLIGCGPGLTPSGDDMLTGMLAVLYVAGFSARLGHFLPPADRLAQLTTSVSCSYLNSARMGEFSIPVLKVMRRLQSGRDPQPAIQRLLAVGHTSGADTLLGIAIAQRWLQMVDSRGRHARSGNNTHIYSGCGDGELFPRGQFAT
>NC_009792.1|WP_012135029.1|3973591_3974854_-|DUF1116-domain-containing-protein
MYSSIAQANEAIIERIKAARPHWVAVRPAKDAVAELASGRKLLHAGPPIAWEEMTGPMRGACIGASLFEGWAASEEEAVRMLEQGEVAFMPCHHVGAVGPMGGITSASMPVLVVRDVVHGNLSCCNLNEGIGKVMRFGAYGDDVQKRLRWMRDVLAPVLQEALSRMENGVDLTALMAQAITMGDEFHQRNIAASSLLLRTLSPVIAGLDRPKAEIIDVLQFLSVTDQFFLNLAMAYSKAVMDAAAEIKAGSVVTAMTRNGRDFGIRVSGTGDRWFTAPVNTPQGLFFTGYSQADANPDIGDSAITETLGIGGAAMIAAPGVTRFVGAGGMGAALETSEEMAEIYLSSNPLFQIPSWDFRGACLGLDIRRVVETGITPLINTGIAHREAGIGQVGAGTVRAPLLCFEKALEALAELHHITA
>NC_009792.1|WP_012135030.1|3974870_3976532_-|acyl-CoA-synthetase-FdrA
MIYAFIKKGSFQDSVSLMIISRKLSERPEVDQVSVMMGTPANKSMLDSTGFWHDDFADATPNDICVAVRTEGEQPGILDLIREQLEKELNAMTNASGSSHQLTKARRWESACQKLPQANLLLVSVAGEYAASVAREGLLANKNVMLFSDNVPLEQEVELKTMARERGLIVMGPDCGTAMIAGSPLAFANVLPEGGIGVIGASGTGIQEVTSQIALHQQGISHAIGLGGRDLSAEVGGISALTALDMLAADDATRVIAFVSKPPSPQVRTRIIAAMQNVGKPVVALFLGRQPEQRREGNVWLANSLSDAAQLAVLLMRVAQQRRIQPEVAGKGIYGLYAGGTLAAEAAMLLSAGLGVPVSESHDQGVMLEAGGHRIVDLGDDSYTLGRPHPMIDPTTRSIEIEKLTAMPTVGVLLLDVVLGYGACADPAGAVVETIEQVRAKRAAPLVVIATLTGTDVDPQGRSGQAEKLREAGIAVVETLEEAVLLAISLTRHQERGIPQAHSALLDGVQVINAGLRSFALDLQSSGTPVVHYQWAPVAGGNARLASLLKQLH
>NC_009792.1|WP_012135031.1|3976545_3977769_-|MFS-transporter
MSGSYEVTEVTNKRGIPAWWVTVFLFWLGWIFMYADRTILNPVMGELEKEFGLSGTQLGILNSVFYFSYALLQVPAGILGDKIGKKKVLVPGFILFGVFTAVTGWAKSWYTLLFARVVTGAGEGTYYGPQYGLSSEQIPKKYRSLGSAIINSGMAFGIALGLMTSSWLVYDQGYSWRMPFYAMAIPSVLVGIAIWLFVKEKKRTAEADGKPVKKGNFSDLLKNRNLIITYIMVFCSLFGFFVILTWLPYYLQSERGIAGSETGFISSLVAWISIPGALLFSSLSDKLGKRKPLIMFLVPVAILSMLSIIWMPNMTGVIIALCVYGLVGKLALDPVLVALVADSVDENNYSTAFGLFNFIGMSSSILAPIIAGAARDITGSLASSFYVSAALLAVGLFAMLFLKEKRT
>NC_009792.1|WP_012135033.1|3978106_3979012_+|carbamate-kinase
MKKKIVIALGGNALLQRGEILSAENQQRSIQVFARMASVLARDYQLVIVHGNGPQVGLLALQNAACTDSPAWPLDILVAESQGMIGFAIAQELASCTGGAPVTTLMTRVAVDPRDDAFATPGKYIGPVYQPAQQAELEARYGWLMKADGNYIRRVVPSPTPLKILDSDAIQTLIDAGHTVICCGGGGIPVIAQDEGYQGVEAVIDKDLTASVLAQSLHADHLLILTDADAVYENWGTPQARALRHATVEELAPFAAPDGAMGPKAAAVMQFVKQTGNTAFIGALKDAPQILAGEKGTCVTR
>NC_009792.1|WP_012135034.1|3979145_3980225_-|class-II-fructose-bisphosphate-aldolase
MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKTDVPQGSAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLEENIEICSKYLARMAKMGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVIKMNIDTDTQWATWEGVLKYYKDNEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEQAFKELNAIDVL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_009792_4	4.1\|1315478\|31\|NC_009792\|CRISPRCasFinder	1315478-1315508	31	NC_009792.1	2855482-2855512	2	0.935

1. spacer 4.1|1315478|31|NC_009792|CRISPRCasFinder matches to position: 2855482-2855512, mismatch: 2, identity: 0.935

agcccggtggcgctaatgcttaccgggcctg	CRISPR spacer
agcccggtggcgttaacgcttaccgggcctg	Protospacer
************.***.**************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009792_4	4.1\|1315478\|31\|NC_009792\|CRISPRCasFinder	1315478-1315508	31	NZ_CP019203	Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence	126542-126572	4	0.871
NC_009792_4	4.1\|1315478\|31\|NC_009792\|CRISPRCasFinder	1315478-1315508	31	NZ_LN868945	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence	93000-93030	4	0.871
NC_009792_4	4.1\|1315478\|31\|NC_009792\|CRISPRCasFinder	1315478-1315508	31	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	105156-105186	4	0.871
NC_009792_4	4.1\|1315478\|31\|NC_009792\|CRISPRCasFinder	1315478-1315508	31	LR134132	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12	21699-21729	5	0.839
NC_009792_4	4.1\|1315478\|31\|NC_009792\|CRISPRCasFinder	1315478-1315508	31	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	583046-583076	5	0.839
NC_009792_6	6.1\|1815596\|32\|NC_009792\|CRISPRCasFinder	1815596-1815627	32	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	73210-73241	6	0.812
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP019203	Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence	107540-107581	6	0.857
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_LN868945	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence	73998-74039	6	0.857
NC_009792_6	6.1\|1815596\|32\|NC_009792\|CRISPRCasFinder	1815596-1815627	32	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	33079-33110	8	0.75
NC_009792_6	6.1\|1815596\|32\|NC_009792\|CRISPRCasFinder	1815596-1815627	32	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	141013-141044	8	0.75
NC_009792_6	6.1\|1815596\|32\|NC_009792\|CRISPRCasFinder	1815596-1815627	32	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	170856-170887	9	0.719
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP019203	Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence	5111-5152	9	0.786
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_LN868945	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence	1993-2034	9	0.786
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	121585-121626	9	0.786
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	35167-35208	9	0.786
NC_009792_8	8.2\|2033120\|31\|NC_009792\|CRISPRCasFinder,CRT,PILER-CR	2033120-2033150	31	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1509005-1509035	9	0.71
NC_009792_8	8.2\|2033120\|31\|NC_009792\|CRISPRCasFinder,CRT,PILER-CR	2033120-2033150	31	MK279840	Mycobacterium phage JacoRen57, complete genome	23209-23239	9	0.71
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	428566-428607	10	0.762
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP022016	Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence	383089-383130	10	0.762
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	LR134122	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2	387864-387905	10	0.762
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	69701-69742	11	0.738
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP019203	Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence	58482-58523	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_LN868945	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence	68712-68753	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP019195	Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence	49193-49234	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	MN310374	Klebsiella pneumoniae strain 2016071221 plasmid p71221-tetA, complete sequence	86023-86064	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP025457	Klebsiella pneumoniae strain KP69 plasmid p69-1, complete sequence	114544-114585	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP013339	Raoultella ornithinolytica strain Yangling I2 plasmid pKPYL1, complete sequence	48153-48194	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	MG288679	Klebsiella pneumoniae plasmid p911021-tetA, complete sequence	135217-135258	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP025577	Klebsiella pneumoniae strain 08EU827 plasmid p08EU827_1, complete sequence	111788-111829	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP026049	Raoultella planticola strain FDAARGOS_64 plasmid unnamed2, complete sequence	82235-82276	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052450	Klebsiella pneumoniae strain C16KP0077 plasmid pC16KP0077-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052491	Klebsiella pneumoniae strain B17KP0069 plasmid pB17KP0069-1, complete sequence	44400-44441	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP010179	Escherichia coli strain H15 plasmid A, complete genome	37346-37387	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052296	Klebsiella pneumoniae strain E16KP0210 plasmid pE16KP0210-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052137	Klebsiella pneumoniae strain F17KP0054 plasmid pF17KP0054-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052570	Klebsiella pneumoniae strain A16KP0119 plasmid pA16KP0119-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	MN310373	Klebsiella pneumoniae strain BJ20 plasmid pBJ20-tetA, complete sequence	43832-43873	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	MN310376	Klebsiella pneumoniae strain 08291 plasmid pW08291-tetA, complete sequence	43321-43362	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP034326	Klebsiella pneumoniae isolate KSH203 plasmid pKSH203-qnrS, complete sequence	47961-48002	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP028792	Klebsiella pneumoniae strain WCHKP020030 plasmid pQnrS1_020030, complete sequence	43722-43763	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052176	Klebsiella pneumoniae strain F16KP0050 plasmid pF16KP0050-1, complete sequence	42130-42171	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052193	Klebsiella pneumoniae strain F16KP0014 plasmid pF16KP0014-1, complete sequence	42130-42171	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP042894	Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_01, complete sequence	80424-80465	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052266	Klebsiella pneumoniae strain E16KP0287 plasmid pE16K0287-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP038004	Klebsiella pneumoniae strain SCKP020009 plasmid pLAP2_020009, complete sequence	44592-44633	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052302	Klebsiella pneumoniae strain E16KP0180 plasmid pE16KP0180-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP036307	Klebsiella pneumoniae strain WCHKP020098 plasmid p1_020098, complete sequence	44592-44633	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052380	Klebsiella pneumoniae strain D16KP0017 plasmid pD16KP0017-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052282	Klebsiella pneumoniae strain E16KP0224 plasmid pE16KP0224-2, complete sequence	42131-42172	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP039329	Citrobacter portucalensis strain Effluent_1 plasmid unnamed2, complete sequence	44449-44490	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP008842	Klebsiella michiganensis strain M1 plasmid pKOXM1A, complete sequence	142780-142821	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052423	Klebsiella pneumoniae strain C16KP0164 plasmid pC16KP0164-1, complete sequence	183633-183674	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052545	Klebsiella pneumoniae strain B16KP0102 plasmid pB16KP0102-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052534	Klebsiella pneumoniae strain B16KP0157 plasmid pB16KP0157-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP042546	Klebsiella michiganensis strain C52 plasmid pC52_001, complete sequence	38609-38650	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052504	Klebsiella pneumoniae strain B17KP0020 plasmid pB17KP0020-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052521	Klebsiella pneumoniae strain B16KP0198 plasmid pB16KP0198-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052173	Klebsiella pneumoniae strain F16KP0064 plasmid pF16KP0064-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	CP052279	Klebsiella pneumoniae strain E16KP0235 plasmid pE16KP0235-1, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_MK036889	Klebsiella pneumoniae strain A1966 plasmid pA1966-IMP, complete sequence	44592-44633	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_MF156696	Klebsiella pneumoniae strain 1642 plasmid p1642-2, complete sequence	42079-42120	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_MG764551	Klebsiella pneumoniae strain A1705 plasmid pA1705-qnrS, complete sequence	42129-42170	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP016838	Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence	96142-96183	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	NZ_CP022659	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence	31613-31654	12	0.714
NC_009792_7	7.1\|1999585\|42\|NC_009792\|CRISPRCasFinder	1999585-1999626	42	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	97243-97284	13	0.69

1. spacer 4.1|1315478|31|NC_009792|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 4, identity: 0.871

agcccggtggcgctaatgcttaccgggcctg	CRISPR spacer
tgcccggtggcgctgacgcttaccgggccta	Protospacer
 *************.*.*************.

2. spacer 4.1|1315478|31|NC_009792|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 4, identity: 0.871

agcccggtggcgctaatgcttaccgggcctg	CRISPR spacer
tgcccggtggcgctgacgcttaccgggccta	Protospacer
 *************.*.*************.

3. spacer 4.1|1315478|31|NC_009792|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 4, identity: 0.871

agcccggtggcgctaatgcttaccgggcctg	CRISPR spacer
tgcccggtggcgcgaacgcttaccgggccta	Protospacer
 ************ **.*************.

4. spacer 4.1|1315478|31|NC_009792|CRISPRCasFinder matches to LR134132 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 12) position: , mismatch: 5, identity: 0.839

agcccggtggcgctaatgcttaccgggcctg	CRISPR spacer
agcccggaggcgctaacgcttaccgggctgt	Protospacer
******* ********.***********.

5. spacer 4.1|1315478|31|NC_009792|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 5, identity: 0.839

agcccggtggcgctaatgcttaccgggcctg	CRISPR spacer
tccccggtggcgctaacgcttaccggggcta	Protospacer
  **************.********** **.

6. spacer 6.1|1815596|32|NC_009792|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.812

acatcgccttatccggcctacgggaagcatat-	CRISPR spacer
tctacgccttatccggcctacgggtag-atacg	Protospacer
 *  ******************** ** ***.

7. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 6, identity: 0.857

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
cctgtaggcctgataagcgtagcgccatcaggcgcgcaaaaa	Protospacer
***********************************      *

8. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.857

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
cctgtaggcctgataagcgtagcgccatcaggcgcgcaaaaa	Protospacer
***********************************      *

9. spacer 6.1|1815596|32|NC_009792|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 8, identity: 0.75

acatcgccttatccggcctacgggaagcatat	CRISPR spacer
tgaacgcctgatccggcctacggtaagcctga	Protospacer
  * ***** ************* **** *.

10. spacer 6.1|1815596|32|NC_009792|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 8, identity: 0.75

acatcgccttatccggcctacgggaagcatat	CRISPR spacer
tgaacgcctgatccggcctacggtaagcctga	Protospacer
  * ***** ************* **** *.

11. spacer 6.1|1815596|32|NC_009792|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.719

acatcgccttatccggcctacgggaagcatat	CRISPR spacer
tgaacgccttatccgacctacgggtagtgcgt	Protospacer
  * ***********.******** **....*

12. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 9, identity: 0.786

cctgtaggcctgataagcgtagcgccatcaggcg--ctgcttta	CRISPR spacer
aatgtaggcctgataagcgcagcgccatcaggcaaccggcac--	Protospacer
  *****************.*************.  * ** .

13. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.786

cctgtaggcctgataagcgtagcgccatcaggcg--ctgcttta	CRISPR spacer
aatgtaggcctgataagcgcagcgccatcaggcaaccggcac--	Protospacer
  *****************.*************.  * ** .

14. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 9, identity: 0.786

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
tccgtaggcctgataagcgcagcgccatcaggcgtttactgc	Protospacer
.*.****************.**************.*  .*

15. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 9, identity: 0.786

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
cttgtaggcccgataagcgtagcgccatcgggcaatatctga	Protospacer
*.********.******************.***. *...* *

16. spacer 8.2|2033120|31|NC_009792|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.71

acttggcgtgctgatgggcgaagttctgcga	CRISPR spacer
cagcggcgtgctgctgggcgaaggtctgtcc	Protospacer
   .********* ********* ****.

17. spacer 8.2|2033120|31|NC_009792|CRISPRCasFinder,CRT,PILER-CR matches to MK279840 (Mycobacterium phage JacoRen57, complete genome) position: , mismatch: 9, identity: 0.71

acttggcgtgctgatgggcgaagttctgcga	CRISPR spacer
tgcaggcgagctggtgggcgaagttctccac	Protospacer
  . **** ****.************* *.

18. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 10, identity: 0.762

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
cttgtaggcctgataagcgaagcgccatcaggcaatagagat	Protospacer
*.***************** *************. *.

19. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP022016 (Salmonella enterica subsp. enterica serovar India str. SA20085604 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.762

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
tacgtaggcctgataagcgcagcgccatcaggcgtcagatca	Protospacer
. .****************.**************...  *.*

20. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to LR134122 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 2) position: , mismatch: 10, identity: 0.762

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
cgcgtaggcctgataagcgaagcgccatcaggcaaggcacac	Protospacer
* .**************** *************.  ** .

21. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 11, identity: 0.738

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aacgtaggcctgataagcgaagcgccatcaggcgttaaagcc	Protospacer
  .**************** **************.*.   .

22. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
accgtaggcccgataagcgtagcgccatcgggcaacagggaa	Protospacer
 *.*******.******************.***. ..    *

23. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
tacgtaggccggataagcgtagcgccgtcaggcagtcaggtg	Protospacer
. .******* ***************.******. *    *.

24. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP019195 (Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

25. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to MN310374 (Klebsiella pneumoniae strain 2016071221 plasmid p71221-tetA, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

26. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP025457 (Klebsiella pneumoniae strain KP69 plasmid p69-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

27. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP013339 (Raoultella ornithinolytica strain Yangling I2 plasmid pKPYL1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

28. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to MG288679 (Klebsiella pneumoniae plasmid p911021-tetA, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

29. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP025577 (Klebsiella pneumoniae strain 08EU827 plasmid p08EU827_1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

30. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP026049 (Raoultella planticola strain FDAARGOS_64 plasmid unnamed2, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

31. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052450 (Klebsiella pneumoniae strain C16KP0077 plasmid pC16KP0077-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

32. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052491 (Klebsiella pneumoniae strain B17KP0069 plasmid pB17KP0069-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

33. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP010179 (Escherichia coli strain H15 plasmid A, complete genome) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

34. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052296 (Klebsiella pneumoniae strain E16KP0210 plasmid pE16KP0210-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

35. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052137 (Klebsiella pneumoniae strain F17KP0054 plasmid pF17KP0054-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

36. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052570 (Klebsiella pneumoniae strain A16KP0119 plasmid pA16KP0119-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

37. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to MN310373 (Klebsiella pneumoniae strain BJ20 plasmid pBJ20-tetA, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

38. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to MN310376 (Klebsiella pneumoniae strain 08291 plasmid pW08291-tetA, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

39. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP034326 (Klebsiella pneumoniae isolate KSH203 plasmid pKSH203-qnrS, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

40. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP028792 (Klebsiella pneumoniae strain WCHKP020030 plasmid pQnrS1_020030, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

41. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052176 (Klebsiella pneumoniae strain F16KP0050 plasmid pF16KP0050-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

42. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052193 (Klebsiella pneumoniae strain F16KP0014 plasmid pF16KP0014-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

43. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP042894 (Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_01, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aacgtaggcctgataagcgaagcgccatcaggcataagtgcc	Protospacer
  .**************** *************.. . * .

44. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052266 (Klebsiella pneumoniae strain E16KP0287 plasmid pE16K0287-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

45. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP038004 (Klebsiella pneumoniae strain SCKP020009 plasmid pLAP2_020009, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

46. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052302 (Klebsiella pneumoniae strain E16KP0180 plasmid pE16KP0180-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

47. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP036307 (Klebsiella pneumoniae strain WCHKP020098 plasmid p1_020098, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

48. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052380 (Klebsiella pneumoniae strain D16KP0017 plasmid pD16KP0017-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

49. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052282 (Klebsiella pneumoniae strain E16KP0224 plasmid pE16KP0224-2, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

50. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP039329 (Citrobacter portucalensis strain Effluent_1 plasmid unnamed2, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

51. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP008842 (Klebsiella michiganensis strain M1 plasmid pKOXM1A, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

52. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052423 (Klebsiella pneumoniae strain C16KP0164 plasmid pC16KP0164-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

53. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052545 (Klebsiella pneumoniae strain B16KP0102 plasmid pB16KP0102-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

54. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052534 (Klebsiella pneumoniae strain B16KP0157 plasmid pB16KP0157-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

55. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP042546 (Klebsiella michiganensis strain C52 plasmid pC52_001, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

56. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052504 (Klebsiella pneumoniae strain B17KP0020 plasmid pB17KP0020-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

57. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052521 (Klebsiella pneumoniae strain B16KP0198 plasmid pB16KP0198-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

58. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052173 (Klebsiella pneumoniae strain F16KP0064 plasmid pF16KP0064-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

59. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to CP052279 (Klebsiella pneumoniae strain E16KP0235 plasmid pE16KP0235-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

60. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_MK036889 (Klebsiella pneumoniae strain A1966 plasmid pA1966-IMP, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

61. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_MF156696 (Klebsiella pneumoniae strain 1642 plasmid p1642-2, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

62. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_MG764551 (Klebsiella pneumoniae strain A1705 plasmid pA1705-qnrS, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

63. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP016838 (Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
aatgtaggcctgataagcgaagcgccatcaggaataagtgcc	Protospacer
  ***************** ************ .. . * .

64. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to NZ_CP022659 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-1, complete sequence) position: , mismatch: 12, identity: 0.714

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
accgtaggcccgataagcgtagcgccatcgggcaacagggaa	Protospacer
 *.*******.******************.***. ..    *

65. spacer 7.1|1999585|42|NC_009792|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 13, identity: 0.69

cctgtaggcctgataagcgtagcgccatcaggcgctgcttta	CRISPR spacer
cgcgtaggccggataagcgtagcgccatccggcataaaagcg	Protospacer
* .******* ****************** ***.. .   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1753662 : 1796752

Escherichia_phage(27.91%)

terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024130410.1\|1753662_1756380_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	58.0
WP_012132713.1\|1756376_1756757_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-56	77.0
WP_012132714.1\|1756766_1757255_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	3.7e-59	70.7
WP_012132715.1\|1757251_1757716_-	hypothetical protein	A0A286S298	Klebsiella_phage	9.7e-49	56.4
WP_012132716.1\|1757715_1760757_-	hypothetical protein	A0A2H4J107	uncultured_Caudovirales_phage	6.0e-123	36.3
WP_071258613.1\|1760796_1761027_-	hypothetical protein	NA	NA	NA	NA
WP_024130411.1\|1761116_1761584_-	hypothetical protein	NA	NA	NA	NA
WP_012132720.1\|1761646_1762807_-	Ig domain-containing protein	A0A059VG08	Pseudomonas_phage	3.3e-61	41.6
WP_012132721.1\|1762833_1763226_-	hypothetical protein	NA	NA	NA	NA
WP_012132722.1\|1763222_1763774_-	hypothetical protein	G8C7Q1	Escherichia_phage	8.3e-31	41.7
WP_024130412.1\|1763972_1764356_-	hypothetical protein	A0A059VA70	Pseudomonas_phage	4.9e-22	47.2
WP_012132726.1\|1764595_1765006_-	hypothetical protein	A0A0H5AUF0	Pseudomonas_phage	1.3e-09	39.0
WP_012132727.1\|1765009_1765303_-	hypothetical protein	G8C7P8	Escherichia_phage	2.2e-06	62.2
WP_012132728.1\|1765350_1766487_-	hypothetical protein	G8C7P7	Escherichia_phage	6.5e-155	74.3
WP_024130413.1\|1766573_1767338_-	hypothetical protein	G8C7P6	Escherichia_phage	6.9e-92	69.3
WP_012132731.1\|1767599_1768712_-	hypothetical protein	I6PD76	Cronobacter_phage	2.6e-116	55.6
WP_012132732.1\|1768698_1770102_-	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	5.5e-196	72.5
WP_012132733.1\|1770105_1771677_-\|terminase	terminase	G8C7P3	Escherichia_phage	1.0e-299	90.4
WP_012132734.1\|1771673_1772162_-	DUF2280 domain-containing protein	H9C190	Pectobacterium_phage	6.2e-54	83.5
WP_012132735.1\|1772194_1772833_-	hypothetical protein	I6S676	Salmonella_phage	2.7e-110	86.8
WP_024130414.1\|1773237_1773597_-	hypothetical protein	NA	NA	NA	NA
WP_080516670.1\|1773708_1774248_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_012132740.1\|1774256_1774787_-	lysozyme	K7PLY1	Enterobacteria_phage	4.6e-79	82.2
WP_012132741.1\|1774783_1775089_-	hypothetical protein	O64361	Escherichia_phage	4.4e-42	84.2
WP_024130416.1\|1775277_1775598_-	hypothetical protein	NA	NA	NA	NA
WP_012132744.1\|1775702_1776386_-	antitermination protein	I6PDF8	Cronobacter_phage	8.3e-65	54.0
WP_024130418.1\|1776382_1776523_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	9.7e-13	85.4
WP_012132746.1\|1776519_1776906_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	4.8e-25	52.7
WP_012132747.1\|1776902_1777259_-	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	2.0e-41	67.2
WP_012132749.1\|1777255_1777537_-	hypothetical protein	G8C7V5	Escherichia_phage	5.0e-40	86.5
WP_012132750.1\|1777539_1777746_-	hypothetical protein	S4TNP0	Salmonella_phage	4.5e-22	70.6
WP_012132751.1\|1777745_1778345_-	DUF1367 family protein	S4TTI0	Salmonella_phage	1.0e-98	88.3
WP_012132752.1\|1778382_1778631_-	hypothetical protein	K7PHG9	Enterobacteria_phage	8.0e-42	98.8
WP_024130419.1\|1778748_1778982_-	DinI-like family protein	K7PM44	Enterobacteria_phage	6.8e-27	74.0
WP_024130420.1\|1779258_1779522_-	hypothetical protein	NA	NA	NA	NA
WP_012132757.1\|1779911_1780478_-	hypothetical protein	NA	NA	NA	NA
WP_012132758.1\|1780639_1781221_+	hypothetical protein	NA	NA	NA	NA
WP_012132759.1\|1781217_1781823_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012132760.1\|1781829_1783074_-	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	7.8e-45	35.4
WP_012132763.1\|1783480_1783741_-	DUF977 family protein	H6WRX9	Salmonella_phage	8.1e-29	73.5
WP_012132764.1\|1783744_1784431_-	DUF1627 domain-containing protein	NA	NA	NA	NA
WP_012132765.1\|1784442_1785132_-	hypothetical protein	G8C7U6	Escherichia_phage	8.7e-62	50.0
WP_024130421.1\|1785128_1786070_-	replication protein	A5VW95	Enterobacteria_phage	1.0e-49	75.8
WP_012132767.1\|1786242_1786497_-	hypothetical protein	NA	NA	NA	NA
WP_024130422.1\|1786506_1787049_-	hypothetical protein	M9NZI6	Enterobacteria_phage	6.2e-47	55.0
WP_024130423.1\|1787051_1787285_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	9.5e-21	62.3
WP_048902391.1\|1787356_1787770_+	helix-turn-helix domain-containing protein	K7PHG0	Enterobacteria_phage	3.1e-46	70.4
WP_024130424.1\|1787868_1788777_+	hypothetical protein	NA	NA	NA	NA
WP_012132772.1\|1789160_1789370_-	fumarate hydratase FumD	I6R0R9	Salmonella_phage	2.7e-27	91.3
WP_024130425.1\|1789643_1789916_+	hypothetical protein	NA	NA	NA	NA
WP_012132776.1\|1790036_1790222_+	YebW family protein	NA	NA	NA	NA
WP_012132778.1\|1790231_1790390_+	hypothetical protein	K7P7H7	Enterobacteria_phage	1.8e-18	82.7
WP_080516652.1\|1790399_1790765_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	1.0e-45	76.7
WP_012132780.1\|1790892_1793805_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	0.0e+00	69.5
WP_012132781.1\|1793817_1794906_+	recombinase RecT	H6WRX0	Salmonella_phage	2.9e-104	53.5
WP_012132782.1\|1794946_1795186_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	1.2e-26	75.6
WP_012132784.1\|1795250_1795466_+	DUF1233 family excisionase	A0A0U2RY08	Escherichia_phage	2.6e-20	60.6
WP_012132785.1\|1795465_1796752_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	3.6e-109	50.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009792

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection