CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009829	Serratia proteamaculans 568 plasmid pSPRO01, complete sequence	0 crisprs	NA	0	0	1	0
NC_009832	Serratia proteamaculans 568, complete genome	1 crisprs	DEDDh,DinG,csa3,cas3,c2c9_V-U4	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14 : 41845

Vibrio_phage(39.47%)

terminase,protease,portal,head,tail,holin,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012004090.1\|14_1004_-	late control D family protein	A0A067ZG47	Vibrio_phage	1.1e-68	42.3
WP_041419270.1\|1000_1216_-	hypothetical protein	A0A067ZJB1	Vibrio_phage	7.5e-12	46.4
WP_012004091.1\|1208_3653_-\|tail	phage tail tape measure protein	A0A097I4X9	Vibrio_phage	2.8e-46	28.4
WP_156779338.1\|3668_3854_-	hypothetical protein	A0A097P6T1	Vibrio_phage	1.5e-05	44.1
WP_012004092.1\|3820_4096_-\|tail	phage tail assembly protein	A0A067ZIM0	Vibrio_phage	1.8e-10	43.4
WP_012004093.1\|4109_4631_-\|tail	phage major tail tube protein	A0A067ZJA9	Vibrio_phage	1.2e-60	64.5
WP_012004094.1\|4641_6102_-\|tail	phage tail protein	A0A067ZJ07	Vibrio_phage	6.0e-153	54.9
WP_041419272.1\|6112_6424_-	hypothetical protein	NA	NA	NA	NA
WP_012004095.1\|6424_6901_-	hypothetical protein	A0A067ZIL8	Vibrio_phage	3.8e-24	40.0
WP_012004096.1\|6897_7242_-	hypothetical protein	NA	NA	NA	NA
WP_041419274.1\|7217_7643_-	hypothetical protein	NA	NA	NA	NA
WP_012004098.1\|7812_8859_-\|capsid	major capsid protein	A0A059WRQ2	Vibrio_phage	9.1e-71	44.0
WP_012004099.1\|8876_9257_-\|head	head decoration protein	NA	NA	NA	NA
WP_012004100.1\|9267_10365_-\|protease	Clp protease ClpP	A0A067ZG37	Vibrio_phage	3.5e-81	51.4
WP_012004101.1\|10366_11941_-\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	1.6e-188	66.7
WP_041419276.1\|11937_12180_-	hypothetical protein	A0A067ZJ01	Vibrio_phage	7.6e-13	54.8
WP_012004102.1\|12198_14049_-\|terminase	phage terminase large subunit family protein	A0A059WKL6	Vibrio_phage	1.8e-226	61.5
WP_041419277.1\|14051_14606_-	hypothetical protein	NA	NA	NA	NA
WP_012004104.1\|14608_15199_-	nuclease	A0A067ZI74	Vibrio_phage	9.8e-38	53.6
WP_012004105.1\|15861_16578_-	hypothetical protein	A0A1B0Z000	Pseudomonas_phage	3.7e-31	35.2
WP_041419322.1\|16620_17997_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012004107.1\|17996_18608_-	nuclease	A0A2I7RQE2	Vibrio_phage	5.2e-34	53.2
WP_041419279.1\|18821_19010_-	hypothetical protein	NA	NA	NA	NA
WP_156779339.1\|19100_19379_-	hypothetical protein	G8C7W3	Escherichia_phage	3.5e-38	84.6
WP_041419280.1\|19726_20137_-	hypothetical protein	NA	NA	NA	NA
WP_012004108.1\|20297_20852_-	hypothetical protein	H9C185	Pectobacterium_phage	3.6e-26	41.6
WP_041419282.1\|20848_21235_-	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	1.9e-45	69.4
WP_083757621.1\|21227_21518_-\|holin	phage holin family protein	A0A0U2JTZ0	Escherichia_phage	1.8e-08	38.8
WP_012004110.1\|21507_21891_-	phage-related protein	K7PHB9	Enterobacterial_phage	2.2e-06	29.8
WP_012004111.1\|22140_23202_-	prophage antirepressor-like protein	A0A0P0J0J7	Acinetobacter_phage	3.7e-27	54.6
WP_012004112.1\|23615_23996_-	hypothetical protein	NA	NA	NA	NA
WP_012004114.1\|25315_25576_-	hypothetical protein	A0A220NQU8	Salmonella_phage	1.1e-20	56.3
WP_049767952.1\|25803_26475_-	hypothetical protein	A0A2I6TD51	Escherichia_phage	2.8e-20	49.1
WP_156779340.1\|26467_26782_-	hypothetical protein	K7ZPX9	Xanthomonas_citri_phage	3.9e-25	55.8
WP_012004117.1\|26778_27207_-	HNH endonuclease	C6ZR29	Salmonella_phage	1.4e-49	73.3
WP_012004118.1\|27199_27568_-	HNH endonuclease	A0A2R2Z2X9	Escherichia_phage	1.8e-58	85.5
WP_012004119.1\|27560_28067_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.0e-67	77.0
WP_012004120.1\|28066_28588_-	ASCH domain-containing protein	A0A1S6L2Y8	Erwinia_phage	5.3e-27	50.4
WP_156779341.1\|28580_28724_-	hypothetical protein	NA	NA	NA	NA
WP_012004121.1\|28726_29533_-	hypothetical protein	O64348	Escherichia_phage	1.4e-07	31.5
WP_041419292.1\|30119_30314_-	hypothetical protein	NA	NA	NA	NA
WP_041419294.1\|30352_30625_-	hypothetical protein	NA	NA	NA	NA
WP_012004122.1\|30646_30964_-	hypothetical protein	A0A2H4JDX9	uncultured_Caudovirales_phage	9.7e-08	36.3
WP_012004123.1\|30984_31398_-	hypothetical protein	NA	NA	NA	NA
WP_156779342.1\|31731_31908_-	hypothetical protein	NA	NA	NA	NA
WP_156779344.1\|31924_32320_-	hypothetical protein	NA	NA	NA	NA
WP_156779345.1\|32325_32649_-	DUF1064 domain-containing protein	A0A2P1JTY5	Anoxybacillus_phage	1.6e-13	41.9
WP_041419299.1\|32654_33059_-	hypothetical protein	NA	NA	NA	NA
WP_041419300.1\|33055_33286_-	hypothetical protein	NA	NA	NA	NA
WP_041419302.1\|33282_33720_-	hypothetical protein	NA	NA	NA	NA
WP_041419304.1\|33716_34202_-	hypothetical protein	NA	NA	NA	NA
WP_041419306.1\|34328_34964_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041419307.1\|35068_35470_+	hypothetical protein	NA	NA	NA	NA
WP_012004127.1\|35619_36264_+	ParA family protein	A0A2H4EW66	Aeromonas_phage	6.5e-19	29.4
WP_041419309.1\|36276_36522_+	hypothetical protein	NA	NA	NA	NA
WP_156779343.1\|36596_36743_+	hypothetical protein	NA	NA	NA	NA
WP_041419311.1\|36940_37132_-	hypothetical protein	NA	NA	NA	NA
WP_012004128.1\|37141_37366_-	YdaF family protein	M4QQ57	Salicola_phage	2.0e-07	51.1
WP_041419338.1\|37459_37819_-	helix-turn-helix domain-containing protein	A0A222YXG1	Escherichia_phage	1.2e-54	87.3
WP_012004130.1\|37824_38127_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.7e-17	44.0
WP_041419340.1\|38504_38756_-	hypothetical protein	H6WRY4	Salmonella_phage	9.9e-16	45.6
WP_071821383.1\|38807_39047_-	hypothetical protein	NA	NA	NA	NA
WP_012004133.1\|39728_40586_-	replication initiation protein	NA	NA	NA	NA
WP_012004134.1\|41332_41845_-\|tail	tail fiber assembly protein	Q37843	Escherichia_phage	2.5e-53	61.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009832

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CRISPR-Cas detection and classification

Crispr_ID: NC_009832_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009832_1

942673-942748

Orphan

Consensus_repeat	Method
GGTTTTTCGCTTTCTGGCATTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009832_1

>merge|NC_009832|1|942673-942748|CRISPRCasFinder
GGTTTTTCGCTTTCTGGCATTCGATAATCAGCCATTGTAATCACGCCTTGGCCGTTTTTTCGCTTTCTGGCATTCG

>NC_009832|1|1|942673-942748|CRISPRCasFinder
GGTTTTTCGCTTTCTGGCATTCG	ATAATCAGCCATTGTAATCACGCCTTGGCC
GTTTTTTCGCTTTCTGGCATTCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009832.1\|WP_012005287.1\|934823_936218_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NC_009832.1\|WP_012005298.1\|950399_950948_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NC_009832.1\|WP_012005290.1\|938195_938702_+\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|234646
NC_009832.1\|WP_012005284.1\|931629_933015_+\|glycoside-hydrolase-family-1-protein	unknown	unknown	gnl\|CDD\|225343
NC_009832.1\|WP_041418464.1\|934031_934793_+\|chitin-disaccharide-deacetylase	unknown	unknown	gnl\|CDD\|235007
NC_009832.1\|WP_012005297.1\|948554_949916_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NC_009832.1\|WP_012005292.1\|942876_943443_+\|fructose-1-phosphate/6-phosphogluconate-phosphatase	unknown	unknown	gnl\|CDD\|182679
NC_009832.1\|WP_004950350.1\|945679_946195_+\|S-ribosylhomocysteine-lyase	unknown	unknown	gnl\|CDD\|179399
NC_009832.1\|WP_002209449.1\|941715_941901_+\|carbon-storage-regulator-CsrA	unknown	unknown	gnl\|CDD\|234973
NC_009832.1\|WP_012005295.1\|946263_947553_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|236933
NC_009832.1\|WP_012005285.1\|933014_933878_+\|transcriptional-regulator-ChbR	unknown	unknown	gnl\|CDD\|182362
NC_009832.1\|WP_012005289.1\|937069_938131_+\|recombinase-RecA	unknown	unknown	gnl\|CDD\|236476
NC_009832.1\|WP_012005283.1\|930219_931581_+\|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|182363
NC_009832.1\|WP_012005288.1\|936468_936957_+\|nicotinamide-nucleotide-amidase	unknown	unknown	gnl\|CDD\|179627
NC_009832.1\|WP_017891659.1\|947593_948385_-\|inner-membrane-protein-YpjD	unknown	unknown	gnl\|CDD\|226621
NC_009832.1\|WP_004932501.1\|950132_950381_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NC_009832.1\|WP_041418465.1\|938835_941463_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NC_009832.1\|WP_012005294.1\|943950_945513_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001
NC_009832.1\|WP_012005299.1\|951000_951768_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NC_009832.1\|WP_012005293.1\|943439_943868_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|224159

Protein	Function_ID	Function_description	E-value
NC_009832.1\|WP_012005287.1\|934823_936218_-\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.00334e-86
NC_009832.1\|WP_012005298.1\|950399_950948_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.44047e-81
NC_009832.1\|WP_012005290.1\|938195_938702_+\|recombination-regulator-RecX	gnl\|CDD\|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	1.45627e-59
NC_009832.1\|WP_012005284.1\|931629_933015_+\|glycoside-hydrolase-family-1-protein	gnl\|CDD\|225343	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism].	0
NC_009832.1\|WP_041418464.1\|934031_934793_+\|chitin-disaccharide-deacetylase	gnl\|CDD\|235007	PRK02134, PRK02134, chitin disaccharide deacetylase.	1.23551e-151
NC_009832.1\|WP_012005297.1\|948554_949916_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NC_009832.1\|WP_012005292.1\|942876_943443_+\|fructose-1-phosphate/6-phosphogluconate-phosphatase	gnl\|CDD\|182679	PRK10725, PRK10725, fructose-1-phosphate/6-phosphogluconate phosphatase.	3.25741e-143
NC_009832.1\|WP_004950350.1\|945679_946195_+\|S-ribosylhomocysteine-lyase	gnl\|CDD\|179399	PRK02260, PRK02260, S-ribosylhomocysteine lyase.	8.90032e-106
NC_009832.1\|WP_002209449.1\|941715_941901_+\|carbon-storage-regulator-CsrA	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	6.68078e-35
NC_009832.1\|WP_012005295.1\|946263_947553_-\|HlyC/CorC-family-transporter	gnl\|CDD\|236933	PRK11573, PRK11573, hypothetical protein; Provisional.	0
NC_009832.1\|WP_012005285.1\|933014_933878_+\|transcriptional-regulator-ChbR	gnl\|CDD\|182362	PRK10296, PRK10296, DNA-binding transcriptional regulator ChbR; Provisional.	0
NC_009832.1\|WP_012005289.1\|937069_938131_+\|recombinase-RecA	gnl\|CDD\|236476	PRK09354, recA, recombinase A; Provisional.	0
NC_009832.1\|WP_012005283.1\|930219_931581_+\|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIC	gnl\|CDD\|182363	PRK10297, PRK10297, PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional.	0
NC_009832.1\|WP_012005288.1\|936468_936957_+\|nicotinamide-nucleotide-amidase	gnl\|CDD\|179627	PRK03661, PRK03661, nicotinamide-nucleotide amidase.	1.21244e-105
NC_009832.1\|WP_017891659.1\|947593_948385_-\|inner-membrane-protein-YpjD	gnl\|CDD\|226621	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.24872e-112
NC_009832.1\|WP_004932501.1\|950132_950381_+\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	1.60633e-43
NC_009832.1\|WP_041418465.1\|938835_941463_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NC_009832.1\|WP_012005294.1\|943950_945513_+\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0
NC_009832.1\|WP_012005299.1\|951000_951768_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	1.92455e-166
NC_009832.1\|WP_012005293.1\|943439_943868_+\|DedA-family-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	2.54592e-31

>NC_009832.1|WP_002209449.1|941715_941901_+|carbon-storage-regulator-CsrA
MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHREEIYQRIQAEKSQPTTY
>NC_009832.1|WP_041418465.1|938835_941463_+|alanine--tRNA-ligase
MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPDNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAISYAWELLTGENWFNLPKERLWVTVYETDDEAFDIWQQQIGVPAERIIRIGDNKGGAFASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNLVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFSKLIAAVAKVTGATDLDNKSLRVIADHIRSCAFLVSDGVTPSNEGRGYVLRRIIRRAVRHGNMLGAKDTFFYKLVAPLIEVMGPAADELKRQQSLVEQVLKTEEDQFARTLERGLTLLDEELANLQGDTLDGETAFRLYDTYGFPVDLTADVCRERGLKVDEAGFEQAMEAQRRRARESSGFGADYNSMIRVDGASQFSGYDHEQQQSTVTALFRDGQPVNEIHAGEEAVVVLDETPFYGESGGQVGDKGVLKAANADFEVSDTQKYGQAIGHQGKLSHGSLKVNDRVDAKIDTVRRNRIRLNHSATHLLHAALRQTLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRTVEDLVNQQIRRNLPVQTEVMALDDAKGKGAMALFGEKYDDNVRVLTMGDFSTELCGGTHASRTGDIGLFRILSESGTAAGIRRIEAVTGDGAIATLHQQNDLLQDVAHLVKGDSNNLTDKVRAVLDRTRALEKELQQLKDQQAAQESASLSSKAKMVNGVQLLVSQLDNVEAKMLRTMVDDLKNQLGSAIIVLATTADDKVSLIAGVTKDLTDRVKAGELIGNVAQQVGGKGGGRPDMAQAGGTDVSALPAALDSVEAWVASKL
>NC_009832.1|WP_012005290.1|938195_938702_+|recombination-regulator-RecX
MNDLLSRAMRLLSQRDHSEAELRRKLAAQPFMAKARFGTKTPSSSAPLPEEPVDPAVIEQVIAYCYQHNWLDDQRFARSYIGSRSRKGYGAQRIRSELMQKGVDKELTQAALADCEIDWCEQAKQVAQRKFGDQLPTDWKEKAKVQRYLLYRGFFQEEIQSIYRDFAQ
>NC_009832.1|WP_012005289.1|937069_938131_+|recombinase-RecA
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKNANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDEVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINSRGELVDLGVKHKMIEKAGAWYSYNGDKIGQGKANACNFLKENPAVAAELDKRLRDLLLHSNGELVAATNEGFDDEAETSEEF
>NC_009832.1|WP_012005288.1|936468_936957_+|nicotinamide-nucleotide-amidase
MSENQLRKLSIAVGEKLKANGQWITCAESCTGGGIAKAITDIAGSSAYFDRGFVTYSNTAKHELLGVAEATLTAHGAVSEEVVREMAQGALHAARASLALSVSGIAGPDGGSAEKPVGTVWFGFADGSGRVLAHRKQFAGDRDAVRLQATIFALQTALDDFL
>NC_009832.1|WP_012005287.1|934823_936218_-|MFS-transporter
MKKTLGVFFPLYTTTLLMLLGSGLLTTYISLRLTSIHVTGALIGAIIAANYIGLVIGGKVGHFLIARVGHIRAYVSCAGIITAAVLGHGLTEYIPVWVVLRLIIGMCMMCQFMVLESWLNDQAESNQRGTVFGFYMAATYLGMSLGQVVLMLQSNLGITTLLLIALCFALCLVPIALTTRTNARHMSPAPMELRYFIGAIPKVLATTLVIGMVVGSFYGLAPVYASLQSLTTQQTGLFMAIAIFAGLVAQFPLSWLSDRYNRTLLMRINAILLIVASLPLALVPHIDFPVLLVVGFIVSMLQFTLYPLVVALANDLIEPERRVSLAACLLMAFGVGASIGPLAVGSLIEPLGGNILYAFFSLCGVLLVGFSRTVKQDESQFVQDAPLPHIPLPDSLTSSPLSPALNPTFDEQIIHDTMPPPEAAPDPVEPQVSETSGEEEAEAAIPQGADPDEDTGLKKAHSML
>NC_009832.1|WP_041418464.1|934031_934793_+|chitin-disaccharide-deacetylase
MEKLLIVNADDFGLSKGQNYGVIEAYHYGVVSSTTAMVNSVDVHHAARLSQLYSGLQIGLHFVLTHGKPLTAMSSLVNERGELGKWLWERAESAQLDLDEIHDELVSQYDKFVAVFGKAPTHIDSHHHVHMLPQIYPLVEAFAQSKSLPLRIGREEVERQGIPLRYGHSTEWFDAGFYGEEISEALFLQVLERTDQRGARSVEMMCHPAFLDNTILASKYCYPRLAEVDVLTSPGLKTAIAERGYRLGSFLDL
>NC_009832.1|WP_012005285.1|933014_933878_+|transcriptional-regulator-ChbR
MGARAVSDNLVSLNTNDVKLIREQDFFNCKDFHLFIYNKVESATGLHQHDYYEFTIVLSGKCYQEINGKRVLLERGDFVFIPIGSRHQSFYEFGAAKIFNVAVGKVFFEENYLQQLPRCFVASQAYSLKNEFLAYIESVVGSPQFREDDFAEFLETLTFYIISRIRHYKEESGEGDDIPQWLKNTLAGMHDKAMFGEKALLNMVELSGKTQEYLTRAMRRYYHKTPMQVINEIRINFAKTQLEVTNYSVSDIAFDSGYGDVSLFIKNFKRLTEVTPGNYRKKFYGPI
>NC_009832.1|WP_012005284.1|931629_933015_+|glycoside-hydrolase-family-1-protein
MKYQFADDFWWGSATSAPQSEGAAARDGKSQNIFDYWYEIAPERFHHQVGPSETSTFYDNFQQDILLLKNLGHNSFRTSISWSRLIPDGDGEVNPKAVAFYNALIDSLLAQGITPFINLYHFDMPLCMQQQGGWESRTVVDAYARYAKTCFSLFGDRVSHWFTFNEPIVPVEAGYLNDLHYPCVIDFKRAITVAYHSVLAHAKAVSEFRALGNQGSIGIILNLSPTYPRSDSQEDGVAAHYADLLLNKSFLDPVTKGRYPDDLVNLLRANDLLPQTAAEDAQLIADGVVDILGVNYYQPRRVKAKEGYQASDPVTMPEDLFSYYAMPGRKINPHRGWEIYEKGLYDILMDLKENYGNIPCYISENGMGVEGEEAFIGASGRVEDDYRIDFIRDHLKWLHQALSEGSNCKGYHLWTFIDCWSWLNAYKNRYGLVRLERDSQQRTIKKSGYWFAETARQNGFD
>NC_009832.1|WP_012005283.1|930219_931581_+|PTS-N,N'-diacetylchitobiose-transporter-subunit-IIC
MNTLIASLEKVILPFAVKIGKQPHVNAIKNGFIRLMPLTLTGAMFVLINNVFLSFGEGSFFFSMGVRLDASTIETLNGLKAIGGSVYNGTLGIMSLMTPFFISMALAEERKVDPLAAALLAVAAFMTVTPFSVGEAYAVGANWLGGANIISGMVIGLVVAEMFTFVVRRNWVISLPDSVPSSVSRSFSALIPGFLILSIMGVLAYCLTLWGTNFHQIIMDSISAPLAKMGSVVGWVYVMFSSLLWFFGVHGSMALAALDSGIMTPFALENVELYNKYGSVEAAVAAGKEFHMWAKPFVDSYIYLGGTGSTLGLIIAIFIASRREDYRQVAKLATPSGIFQINEPILFGLPVIMNPVMFIPFILVQPVLTIITTVAYYTGLIPPITNIAPWTMPVGLGAFFNTNGSIVAMLLSFFNLGVATLIYLPFVMISNKAQSQIDQATESEEDIAKALKF
>NC_009832.1|WP_012005292.1|942876_943443_+|fructose-1-phosphate/6-phosphogluconate-phosphatase
MYDRYQGLIFDMDGTILDTEPTHRKAWREVLSRYGMTFDEPAVMALSGSPTWHIAQAIIASHQADLDPHQLAAEKTRAVEIMLLDSVRPLPLIEVVKAYHGRRPMAVGTGSEHRMAETLLRHLGLFHCFDAIVGADDVQRHKPEPDTFLRCAELIGVPPEKCVVFEDADFGIQAAKSANMAVVDVRTL
>NC_009832.1|WP_012005293.1|943439_943868_+|DedA-family-protein
MSSTLAVMSLFGGSFLSATLLPGNSEIILVALLTNSRVSPELLVLAATLGNTLGGLTNVIIGRLLPALKPQRGLDTALGWMQRFGPAALLLSWVPVVGDLLCVLAGWLRMPWGPVALFLCIGKALRYIILTMITLQGMAWWH
>NC_009832.1|WP_012005294.1|943950_945513_+|glutamate--cysteine-ligase
MIPDVSQALSWLEAHPHALKGIRRGIERETLRVTEDGKLATTGHPEKLGAALTHHWITTDFAEALLEFITPVDDNLDHLLTFLRDIHRHVARNLGEERMWPLSMPCFIEAEQDIELAQFGSSNIGRMKTLYREGLKNRYGALMQTISGVHYNFSLPLEFWQAWAGVKDAESGKEQISAGYFRLIRNYYRFGWVIPYLFGASPAICSSFLKGRETALPFERTEQGMCYLPYATSLRLSDLGYTNKSQSNLGITFNDLQSYVEGLKRAIVTPSEEFAKLGVKDGDRHLQLNSNVLQIENELYAPIRPKRVTKSGETPSDALLRGGIEYIEVRSLDINPFSPIGVDAVQARFLDLFLIWCVLADAPEMSSDELLCTRKNWNRVILEGRKPGQTIGIGCDDSREPLAKVGKALFDDLRRVAEVLDSEAGDRQYQQVCDELVAAFDDPELTFSARILKAMKEEGTGRVGLQLAEQYRQMLIEEPLEILTETELAKEQEASWQRQRNVEASDTLSFEEFLKQHGGS
>NC_009832.1|WP_004950350.1|945679_946195_+|S-ribosylhomocysteine-lyase
MPLLDSFTVDHTRMAAPAVRVAKTMKTPHGDTITVFDLRFCRPNLEVMPERGIHTLEHLFAGFMRDHLNGQGVEIIDISPMGCRTGFYMSLIGVPEEQRVADAWKAAMSDVLKVTDQRKIPELNEFQCGTYHMHSLEEAQEIAKHILDHDVVVNHNEELALPKEKLQELHI
>NC_009832.1|WP_012005295.1|946263_947553_-|HlyC/CorC-family-transporter
MEHVSTGTLIIILVVMIVVSAYFSASETGMMTLNRYRLRHLSKQGNRSARRVEKLLQKPDRLIGLVLIGNNLVNILASALATIVGMRLYGDFGVAIATGILTFAVLLFAEVLPKTFAALYPERIAFPSSVLLAPLQKVMFPLVWLLNGITTLVLRLFGIHTNVRVSDAVSKDELRTIVNESHSQISRRNQDMLISVLDLEKVTVDDIMVPRNEIVGIDVNDDWKSIMRQLTHSPHGRIVLYRGSLDDAIGMLRVREAYRLMTEKKEFNKENLLRAADEIYYVPEGTPLNVQLVKFQRNKEKVSIVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVNPQSDGSVLIDGTANVRELNKAFNWTLPATDARTINGMLLEELEEIPEVGTRVRVGHYDVDILDVQDNMIKQVRVTPIKSLQSSVQQH
>NC_009832.1|WP_017891659.1|947593_948385_-|inner-membrane-protein-YpjD
MPVFSIVALIAYLLSLGLIIPSLLRKNSAYRRLALVSAVVALVCHAIALQQRIFDVSAGQNLSLLNIGSIVSLIICSVMTFVASRDRGWFLLPIVYSFAMINLAFASFMPGEFITHLEASPELMVHIGLALFSYATLIIAALYALQLAWLDYLLKNKKLSFSADMPPLMSIERKMFHITQIGVVLLTLTLCTGLLYMDNLFSKENVHKAVLSIMAWFVYIVLLWGHYHEGWRGRRVVWFSFAGAFLLTLAYFGSRLIQQVMVR
>NC_009832.1|WP_012005297.1|948554_949916_+|signal-recognition-particle-protein
MFENLTDRLSRTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVRDFINRVKESAVGHEVNKSLTPGQEFVKIVKSELISAMGEVNTELNLAAQPPAVVLMAGLQGAGKTTSVAKLGKFLKEKQKKKVLVVSADVYRPAAIKQLETLAESVGIDFFPSDVKEKPIDIVNRALQQAKLKFYDVLIVDTAGRLHVDEAMMDEIKQVHAAIKPVETLFVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVGEKTEALEPFHPDRVASRILGMGDVLSLIEDIESKVDREQAEKLANKLKKGDGFDLTDFLEQLKQMRNMGGMASMLSKLPGAGQLPDNVKSQMDDKVLVRMEAMINSMTLKERAKPEIIKGSRKRRIAVGSGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRGMKGMMPPGFPGR
>NC_009832.1|WP_004932501.1|950132_950381_+|30S-ribosomal-protein-S16
MVTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPIASGQAEALRLDLDRIEHWVGLGATVSDRVHALIKDAKKAA
>NC_009832.1|WP_012005298.1|950399_950948_+|ribosome-maturation-factor-RimM
MSKQLKPVAPKQPIVLGKMGSTYGIRGWLRVFSSTENAESIFDYQPWLIQRSGQWQFVELEDWKRHSQDLIIKVKGIDDRDAANLLTNCEIVVDSEQLPPLEGDDYYWKDLMGCQVVTTSGYELGKVIDMMETGSNDVMVVRANLKDAFGMKERLVPFLHGQVIKKVDLTARVIEADWDPGF
>NC_009832.1|WP_012005299.1|951000_951768_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MFIGIVSLFPEMFRAITDYGVTGRAVKNGLLSVQCWSPRDFTYDRHRTVDDRPYGGGPGMLMMVQPLREAIHAAKAAAGEGAKVIYLSPQGRKLDQTGVCELAANPKMILVCGRYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGHQASAEEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWLRRPELLESLALTDEQAVLLAEFQREHQTKQQDYEGNV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

921376 : 974314

Erwinia_phage(23.33%)

tRNA,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012005276.1\|921376_922423_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_012005277.1\|922694_923456_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.5e-56	47.2
WP_012005278.1\|923449_924076_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.2e-33	49.4
WP_026142205.1\|924382_925387_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.1e-07	38.6
WP_012005280.1\|925440_926439_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	9.4e-33	37.6
WP_012005281.1\|926519_929075_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	8.0e-28	24.3
WP_020825274.1\|929890_930208_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_012005283.1\|930219_931581_+	PTS N,N'-diacetylchitobiose transporter subunit IIC	NA	NA	NA	NA
WP_012005284.1\|931629_933015_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA
WP_012005285.1\|933014_933878_+	transcriptional regulator ChbR	NA	NA	NA	NA
WP_041418464.1\|934031_934793_+	chitin disaccharide deacetylase	NA	NA	NA	NA
WP_012005287.1\|934823_936218_-	MFS transporter	NA	NA	NA	NA
WP_012005288.1\|936468_936957_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	1.2e-28	48.4
WP_012005289.1\|937069_938131_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	6.3e-112	61.6
WP_012005290.1\|938195_938702_+	recombination regulator RecX	NA	NA	NA	NA
WP_041418465.1\|938835_941463_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.4e-80	37.2
WP_002209449.1\|941715_941901_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	3.8e-12	66.7
WP_012005292.1\|942876_943443_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_012005293.1\|943439_943868_+	DedA family protein	NA	NA	NA	NA
WP_012005294.1\|943950_945513_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_004950350.1\|945679_946195_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_012005295.1\|946263_947553_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_017891659.1\|947593_948385_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_012005297.1\|948554_949916_+	signal recognition particle protein	NA	NA	NA	NA
WP_004932501.1\|950132_950381_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_012005298.1\|950399_950948_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_012005299.1\|951000_951768_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_012005300.1\|951822_952179_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_012005301.1\|952333_952552_-	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	1.8e-21	66.2
WP_012005302.1\|952640_953732_-	phage late control D family protein	Q6K1G4	Salmonella_virus	9.4e-103	49.4
WP_012005303.1\|953728_954202_-\|tail	phage tail protein	O64315	Escherichia_phage	5.1e-45	56.8
WP_156779318.1\|954218_956195_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	1.0e-14	25.6
WP_012005305.1\|956316_956451_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	1.5e-10	78.9
WP_012005306.1\|956471_956759_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	1.8e-24	60.2
WP_012005307.1\|956823_957333_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	1.6e-65	68.4
WP_012005308.1\|957346_958516_-\|tail	phage tail sheath protein	F1BUU3	Erwinia_phage	2.4e-184	80.2
WP_012005309.1\|958659_959214_-\|tail	tail fiber assembly protein	F1BUK2	Cronobacter_phage	4.4e-32	44.3
WP_012005311.1\|960876_964170_-\|tail	phage tail protein I	A0A2L0V120	Salmonella_phage	6.9e-266	47.7
WP_012005312.1\|964162_965071_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	5.8e-122	76.8
WP_012005313.1\|965075_965426_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	1.4e-36	64.7
WP_012005314.1\|965422_966058_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.6e-57	54.0
WP_012005315.1\|966146_966611_-\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.6e-38	52.6
WP_012005316.1\|966650_967163_-	lysozyme	A0A218M4K3	Erwinia_phage	1.8e-56	63.1
WP_012005317.1\|967146_967365_-	hypothetical protein	B6SD15	Bacteriophage	8.1e-06	50.9
WP_012005318.1\|967368_967572_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	1.8e-20	67.2
WP_026142210.1\|967777_967972_-	hypothetical protein	NA	NA	NA	NA
WP_012005319.1\|968035_970099_-	replication endonuclease	Q858T4	Yersinia_virus	3.2e-208	50.7
WP_012005320.1\|970103_970325_-	hypothetical protein	F1BUS2	Erwinia_phage	7.7e-12	51.4
WP_012005321.1\|970399_970705_-	hypothetical protein	NA	NA	NA	NA
WP_041418466.1\|970940_971837_+	phage repressor protein CI	Q6K1G0	Salmonella_virus	1.3e-81	53.5
WP_012005323.1\|971891_972656_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_012005324.1\|973240_974314_+	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	50.9

DBSCAN-SWA_2

1846206 : 1853834

Escherichia_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012006115.1\|1846206_1847550_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.3e-77	39.4
WP_012006116.1\|1847660_1848953_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.8e-92	52.6
WP_012006117.1\|1849223_1851677_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.1e-218	49.5
WP_012006118.1\|1851687_1852305_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	6.1e-75	58.3
WP_012006119.1\|1852306_1853167_+	dimethyl sulfoxide reductase subunit C	A0A077SK59	Escherichia_phage	1.1e-29	36.6
WP_012006120.1\|1853216_1853834_+	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	2.9e-24	38.1

DBSCAN-SWA_3

1930676 : 1986363

uncultured_Caudovirales_phage(40.0%)

protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012006179.1\|1930676_1932449_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_012006180.1\|1932637_1933096_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_012006181.1\|1933208_1934285_-	porin OmpA	NA	NA	NA	NA
WP_012006182.1\|1934643_1935150_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_012006183.1\|1935382_1936042_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_012006184.1\|1936042_1938178_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_017892313.1\|1938204_1938657_-	YccF domain-containing protein	NA	NA	NA	NA
WP_012006186.1\|1938822_1940877_+	DNA helicase IV	A7KV33	Bacillus_phage	8.2e-15	24.9
WP_012006187.1\|1940910_1941369_-	methylglyoxal synthase	NA	NA	NA	NA
WP_012006188.1\|1941494_1942166_-	DUF2057 family protein	NA	NA	NA	NA
WP_012006189.1\|1942427_1942841_+	CoA-binding protein	NA	NA	NA	NA
WP_012006190.1\|1942897_1943215_-	heat shock protein HspQ	NA	NA	NA	NA
WP_012006191.1\|1943276_1944467_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_012006192.1\|1944559_1944838_+	acylphosphatase	NA	NA	NA	NA
WP_012006193.1\|1944842_1945172_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_004942825.1\|1945283_1945943_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.8e-41	48.4
WP_012006194.1\|1946400_1947234_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_012006195.1\|1947337_1947667_-	hypothetical protein	NA	NA	NA	NA
WP_012006196.1\|1947663_1948032_-	toxin	NA	NA	NA	NA
WP_012006197.1\|1948093_1948429_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_041418906.1\|1948440_1948920_-	DNA repair protein RadC	NA	NA	NA	NA
WP_041418908.1\|1948955_1949381_-	antirestriction protein	NA	NA	NA	NA
WP_012006200.1\|1949596_1950853_-	O-antigen ligase family protein	NA	NA	NA	NA
WP_012006201.1\|1950905_1952075_-	putative lipopolysaccharide heptosyltransferase III	NA	NA	NA	NA
WP_012006202.1\|1952677_1953154_-	hypothetical protein	NA	NA	NA	NA
WP_041418522.1\|1953464_1953812_-	hypothetical protein	NA	NA	NA	NA
WP_012006206.1\|1954912_1956346_+	DUF3987 domain-containing protein	A0A0K0N7B1	Gordonia_phage	3.7e-06	22.3
WP_041418911.1\|1956790_1957375_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_012006208.1\|1958948_1959446_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_012006209.1\|1959480_1961028_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_012006210.1\|1961044_1962385_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_012006211.1\|1962381_1963071_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_012006212.1\|1963067_1964777_+	OmpA family protein	NA	NA	NA	NA
WP_012006213.1\|1964780_1965272_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_012006214.1\|1965444_1968099_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	4.6e-95	32.6
WP_041418523.1\|1968159_1968447_+	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_083757598.1\|1968519_1970997_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.3e-19	35.3
WP_049767914.1\|1970997_1971783_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_012006217.1\|1971894_1972428_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_012006218.1\|1972536_1973070_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_012006219.1\|1973178_1973691_+	DUF3304 domain-containing protein	NA	NA	NA	NA
WP_012006220.1\|1973678_1976126_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_012006221.1\|1976144_1976402_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_083757599.1\|1976479_1977538_+	hypothetical protein	NA	NA	NA	NA
WP_041418525.1\|1977521_1980968_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_012006224.1\|1980967_1982560_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_012006225.1\|1982587_1984342_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012006226.1\|1984305_1985391_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012006227.1\|1985368_1985914_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_012006228.1\|1985913_1986363_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_4

2234414 : 2240578

Enterobacteria_phage(33.33%)

terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012006462.1\|2234414_2234675_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.8e-23	66.3
WP_156779289.1\|2234722_2235148_+	hypothetical protein	NA	NA	NA	NA
WP_012006463.1\|2235518_2236073_+\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	8.5e-68	68.9
WP_012006464.1\|2236047_2237973_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	8.1e-299	75.0
WP_012006466.1\|2238804_2239263_+\|tail	phage tail protein	A4PE53	Ralstonia_virus	4.2e-12	29.1
WP_041418928.1\|2239237_2239453_+\|tail	tail protein	A0A193GYC8	Enterobacter_phage	7.7e-09	42.6
WP_012006467.1\|2239456_2240578_+	late control protein D	R9TNM7	Vibrio_phage	1.4e-37	34.8

DBSCAN-SWA_5

2299965 : 2323384

Moraxella_phage(50.0%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012144845.1\|2299965_2300898_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_012144846.1\|2300916_2303265_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_012144847.1\|2303416_2304181_-	molecular chaperone	NA	NA	NA	NA
WP_012144848.1\|2304204_2304759_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_012144849.1\|2304758_2305262_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_012144850.1\|2305264_2305804_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_041418930.1\|2306081_2307518_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_041418932.1\|2310220_2311468_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_012144853.1\|2311714_2312212_+	GAF domain-containing protein	NA	NA	NA	NA
WP_012144854.1\|2312307_2313018_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_012144855.1\|2313037_2315074_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.7e-84	33.9
WP_012144856.1\|2315374_2316253_+\|protease	protease HtpX	NA	NA	NA	NA
WP_041418934.1\|2316301_2317696_-	MFS transporter	NA	NA	NA	NA
WP_012144858.1\|2317923_2318715_+	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_115184976.1\|2318846_2320244_-	L-cystine transporter	NA	NA	NA	NA
WP_012144860.1\|2320422_2320971_-	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	6.4e-07	33.1
WP_012144861.1\|2321366_2322032_-	hexitol phosphatase HxpB	NA	NA	NA	NA
WP_012144862.1\|2322097_2323384_-\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_6

2339739 : 2349751

Tupanvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012144880.1\|2339739_2341668_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.7e-131	37.6
WP_013812633.1\|2341671_2342223_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.4e-16	33.7
WP_004943591.1\|2342321_2342519_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_004943595.1\|2342562_2342919_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_156779291.1\|2342988_2343084_+	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_012144881.1\|2343280_2344264_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	5.8e-35	38.0
WP_012144882.1\|2344278_2346666_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	2.4e-05	23.7
WP_004943604.1\|2346670_2346967_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	4.2e-13	40.0
WP_012144883.1\|2347369_2348377_+	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_012144884.1\|2348418_2348970_+	glutathione peroxidase	NA	NA	NA	NA
WP_012144885.1\|2348995_2349751_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	1.9e-09	28.8

DBSCAN-SWA_7

2464527 : 2470379

Escherichia_phage(33.33%)

transposase,integrase

attL 2460485:2460500|attR 2468607:2468622

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2460485:2460500	attL	NA	NA	NA	NA
WP_012144994.1\|2464527_2465814_-\|integrase	site-specific integrase	A0A0P0ZGA8	Escherichia_phage	5.9e-120	50.8
WP_012144995.1\|2465828_2466107_-	excisionase family protein	A0A286S2A4	Klebsiella_phage	7.1e-15	46.1
WP_041418549.1\|2466103_2466328_-	hypothetical protein	A0A2H4J398	uncultured_Caudovirales_phage	8.0e-17	59.2
WP_041418551.1\|2466631_2466853_-	hypothetical protein	NA	NA	NA	NA
WP_041418552.1\|2466915_2467710_-	DUF551 domain-containing protein	A0A088FQU9	Escherichia_phage	4.4e-09	58.2
WP_156779276.1\|2467810_2468960_+\|transposase	IS3-like element ISSpr1 family transposase	U5P429	Shigella_phage	1.2e-95	63.1
2468607:2468622	attR	NA	NA	NA	NA
WP_041418553.1\|2469230_2470379_-	acyltransferase	Q6QI96	Burkholderia_phage	2.5e-37	31.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009829

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_009832

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection