CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_009933	Acaryochloris marina MBIC11017 plasmid pREB8, complete sequence	1 crisprs	cas4	1	0
NC_009929	Acaryochloris marina MBIC11017 plasmid pREB4, complete sequence	0 crisprs	cas4	0	1
NC_009931	Acaryochloris marina MBIC11017 plasmid pREB6, complete sequence	0 crisprs	RT,csa3,Cas9_archaeal	0	1
NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	0 crisprs	PD-DExK,csa3,cas4,cas14j,c2c9_V-U4,RT	0	2
NC_009930	Acaryochloris marina MBIC11017 plasmid pREB5, complete sequence	0 crisprs	cas4,PD-DExK	0	1
NC_009925	Acaryochloris marina MBIC11017, complete sequence	3 crisprs	csa3,PD-DExK,DEDDh,DinG,cas3,c2c5_V-U5,RT,cas4	0	17
NC_009926	Acaryochloris marina MBIC11017 plasmid pREB1, complete sequence	0 crisprs	c2c9_V-U4,c2c8_V-U2,RT,csa3	0	1
NC_009928	Acaryochloris marina MBIC11017 plasmid pREB3, complete sequence	0 crisprs	cas4,RT	0	2
NC_009934	Acaryochloris marina MBIC11017 plasmid pREB9, complete sequence	0 crisprs	NA	0	0
NC_009932	Acaryochloris marina MBIC11017 plasmid pREB7, complete sequence	1 crisprs	DEDDh	1	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

142719 : 193805

uncultured_virus(25.0%)

transposase,protease,integrase

attL 166164:166179|attR 198611:198626

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148216080.1\|142719_143716_+\|transposase	IS1 family transposase	NA	NA	NA	NA
WP_012167704.1\|143731_144691_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012167703.1\|144989_145181_+	hypothetical protein	NA	NA	NA	NA
WP_012167702.1\|145221_145941_+	bidirectional hydrogenase complex protein HoxU	NA	NA	NA	NA
WP_012167701.1\|146061_146607_+	oxidoreductase	NA	NA	NA	NA
WP_010476565.1\|146680_147226_+	CBS domain-containing protein	NA	NA	NA	NA
WP_012167700.1\|147323_148700_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_012167699.1\|148740_149367_+	CBS domain-containing protein	NA	NA	NA	NA
WP_012167698.1\|149404_150889_+	Ni/Fe hydrogenase subunit alpha	NA	NA	NA	NA
WP_012167697.1\|150922_151159_-	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_041661414.1\|151149_153627_-	carbamoyltransferase HypF	NA	NA	NA	NA
WP_012167695.1\|153679_154162_-	adenosine-specific kinase	NA	NA	NA	NA
WP_041661415.1\|154193_154862_-	DUF1614 domain-containing protein	NA	NA	NA	NA
WP_012167693.1\|154930_155746_-	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA
WP_010476553.1\|155747_156089_-	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_012167692.1\|156081_156612_-\|protease	hydrogenase maturation protease	NA	NA	NA	NA
WP_010476550.1\|156875_157451_+	hypothetical protein	NA	NA	NA	NA
WP_012167691.1\|157516_158401_+	geranylgeranylglycerol-phosphate geranylgeranyltransferase	NA	NA	NA	NA
WP_012167690.1\|158413_159433_-	AIR synthase family protein	NA	NA	NA	NA
WP_041661394.1\|159460_164185_-	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	5.5e-14	23.0
WP_012167687.1\|164575_167203_+	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	7.3e-16	45.2
166164:166179	attL	NA	NA	NA	NA
WP_012167686.1\|167208_168108_-	sigma-70 family RNA polymerase sigma factor	G8CLC7	Synechococcus_phage	2.7e-39	36.4
WP_012167685.1\|168184_168343_-	hypothetical protein	NA	NA	NA	NA
WP_010476541.1\|168664_169510_-	hypothetical protein	NA	NA	NA	NA
WP_012167684.1\|169556_170642_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_010476539.1\|171045_171810_+	PRC-barrel domain-containing protein	NA	NA	NA	NA
WP_012167682.1\|171901_172213_+	co-chaperone GroES	A0A221S356	uncultured_virus	2.4e-11	34.8
WP_041661416.1\|172241_173852_+	chaperonin GroEL	A0A219YK78	uncultured_virus	1.2e-141	50.5
WP_012167680.1\|174050_174302_+	DUF1830 domain-containing protein	NA	NA	NA	NA
WP_012167679.1\|174451_174709_+	DUF1816 domain-containing protein	NA	NA	NA	NA
WP_010476531.1\|174744_176016_+	MgtC/SapB family protein	NA	NA	NA	NA
WP_010476529.1\|177271_177526_+	hypothetical protein	NA	NA	NA	NA
WP_175307248.1\|177853_178381_+	universal stress protein	NA	NA	NA	NA
WP_012167673.1\|180171_181068_-\|integrase	tyrosine-type recombinase/integrase	A0A160DFH7	Gordonia_phage	3.3e-05	27.1
WP_041661418.1\|181148_181622_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_041661395.1\|181626_182151_+	DUF4158 domain-containing protein	NA	NA	NA	NA
WP_041661396.1\|182186_182663_+	hypothetical protein	NA	NA	NA	NA
WP_148216081.1\|182695_183524_+\|transposase	IS1 family transposase	NA	NA	NA	NA
WP_012167667.1\|185705_186026_-	hypothetical protein	NA	NA	NA	NA
WP_012167343.1\|186222_187959_+\|transposase	IS21-like element ISAcma26 family transposase	NA	NA	NA	NA
WP_148216082.1\|187861_188518_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.6e-31	39.2
WP_148216083.1\|188596_189067_-	hypothetical protein	NA	NA	NA	NA
WP_012167665.1\|189202_189475_-	hypothetical protein	NA	NA	NA	NA
WP_010471144.1\|190228_190774_+	universal stress protein	NA	NA	NA	NA
WP_010471142.1\|191126_191663_-	flavodoxin family protein	NA	NA	NA	NA
WP_012167661.1\|191837_193805_-\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	4.1e-104	39.3
198611:198626	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_009933

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CRISPR-Cas detection and classification

Crispr_ID: NC_009933_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009933_1

90274-90411

Orphan

Consensus_repeat	Method
TAAGGTTTTCGGACCCTCTGGTTGTTTGATCGCGGTTAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009933_1

>merge|NC_009933|1|90274-90411|CRISPRCasFinder
TAAGGTTTTCGGACCCTCTGGTTGTTTGATCGCGGTTAGAGGGTCTTTTAGTTTTTTCATCAAAGGCTAACGGTGCAGTTAGCCTCAATCGGTGTTTAAGGTTTCGGACCCTCTGGTTGTTTGATCGCGGTTAGAGGG

>NC_009933|1|1|90274-90411|CRISPRCasFinder
TAAGGTTTTCGGACCCTCTGGTTGTTTGATCGCGGTTAGAGGG	TCTTTTAGTTTTTTCATCAAAGGCTAACGGTGCAGTTAGCCTCAATCGGTGT
TTAAGGTTTCGGACCCTCTGGTTGTTTGATCGCGGTTAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009933.1\|WP_148216146.1\|78234_79758_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_009933.1\|WP_012168507.1\|98693_99167_+\|hypothetical-protein	unknown	unknown	unknown
NC_009933.1\|WP_012168500.1\|88970_90242_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274108
NC_009933.1\|WP_012168487.1\|70372_70672_+\|hypothetical-protein	unknown	unknown	unknown
NC_009933.1\|WP_148216153.1\|96427_97315_+\|hypothetical-protein	unknown	unknown	unknown
NC_009933.1\|WP_012168496.1\|82217_82802_-\|hypothetical-protein	unknown	unknown	unknown
NC_009933.1\|WP_012168494.1\|79837_81112_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_009933.1\|WP_012168503.1\|92372_93029_+\|hypothetical-protein	unknown	unknown	unknown
NC_009933.1\|WP_012168502.1\|91424_92288_+\|hypothetical-protein	unknown	unknown	unknown
NC_009933.1\|WP_012168504.1\|93040_96166_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379165
NC_009933.1\|WP_012168510.1\|101348_101747_-\|hypothetical-protein	unknown	unknown	unknown
NC_009933.1\|WP_148216154.1\|97346_98618_+\|hypothetical-protein	unknown	unknown	unknown
NC_009933.1\|WP_012168495.1\|81116_81365_-\|transposase	unknown	unknown	gnl\|CDD\|376980
NC_009933.1\|WP_012168489.1\|70934_73025_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_009933.1\|WP_012168498.1\|84678_88434_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226809
NC_009933.1\|WP_049783931.1\|91082_91364_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379188
NC_009933.1\|WP_012168497.1\|82959_84513_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_009933.1\|WP_012168492.1\|77484_78105_-\|hypothetical-protein	unknown	unknown	unknown
NC_009933.1\|WP_012168508.1\|99173_99851_+\|hypothetical-protein	unknown	unknown	unknown
NC_009933.1\|WP_012168509.1\|99884_101237_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009933.1\|WP_148216146.1\|78234_79758_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.68567e-34
NC_009933.1\|WP_012168495.1\|81116_81365_-\|transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	6.20361e-14
NC_009933.1\|WP_012168500.1\|88970_90242_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274108	TIGR02393, RNA_polymerase_sigma_factor_RpoD, RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc. [Transcription, Transcription factors].	3.04594e-32
NC_009933.1\|WP_012168498.1\|84678_88434_-\|hypothetical-protein	gnl\|CDD\|226809	COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown].	0.000232312
NC_009933.1\|WP_049783931.1\|91082_91364_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	0.000185455
NC_009933.1\|WP_012168489.1\|70934_73025_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.33921e-37
NC_009933.1\|WP_012168497.1\|82959_84513_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.04564e-29
NC_009933.1\|WP_012168494.1\|79837_81112_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	7.75684e-23
NC_009933.1\|WP_012168504.1\|93040_96166_+\|hypothetical-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	0.00356651

>NC_009933.1|WP_012168500.1|88970_90242_-|sigma-70-family-RNA-polymerase-sigma-factor
MVYTNVFNSQSLETGPFSRKVQYPQIERAQAGDRRAEDRFIRKNQRLVFNEAKRYRGLVDWDDLVNAGTLGLSIAIQKFDLSRGFQFSTYAVKPIRTEIRQLICEQRGLSREITKHLKKIDEAEQDLKLELERKPTLDELAERTGYSHRVITNAWSKARVVDTSSLNVLTGTEQGIECLDFVEDLEQLDSWDFAESINMKDYIAQLPDRESFIVRARRDGHSYREIGTMLKLSGERIRQLYQKALEYLKHLITYGSCLVRFPQPDKTQLIHPEGIEKPTVKRVDASRLGGKIGRAIQQIFKQTNKESHIHEPGELTNAQKHILVFRRRSSHEAANVARHRLTPENQRCHQLERTQDDWRGHLGFSPVILNIILLPLALVSQSVRRLQDNDRPNERRSIMSSITSGVSKVIEGGYRKEHPRPPN
>NC_009933.1|WP_012168498.1|84678_88434_-|hypothetical-protein
MTSTPSLTLNSPHLGFGTPTRYTSKLIPFKRQNHCPICGSNDGRCSKGGDIILCLTETYDVGIINGYKFRKLSKDSNWGIWAPHTGDDNYNSINWQARKAIRDQQAKEERRQRIAKELPVGQRDYLYRQLLSDLSLCSMDRGDMGRRGMSQAEIDGFDAVSVGQFQRVKDLSPDLPGVLPGGILNSQGGYLWPLYDVHDQIVALQLRKRNVHEDNRYIWLSSSTRRNPNGNGPHVHGEIPLAIYKSFGPYSRIALVEGTGVKPYLLSQRLQLPTIGAAGGLWASSPDTLRETLTVLSKDAEQSPIITLYPDAGAVRNLNVFRQYQRVIRLLEEWGYIVEVAWWGQTYKENSCDIDELTPVELAQIVFKPTWFFNSLGLEYELGQLFLKLNGLSDQATTVINKRYIELSDLGTIDPGSVVAIASMCGTGKTEMLKSLVSQVKGQVIMPGYRNNLLFNTEDRFTEKDDAGNTLYKLIHLFRLNKEYQGNISMGFRSERSILLCFDSLLKIELDDIEPDSCIILDEADAALFHVLSGQTLGDRQNQILEHFHAIANRVLETRGNIILLEDSLSQIPIDYIKGITGGKYNTKIVVNEYKPDDNFPTKVFSGQTSQFLERILNAVACDERFIVVATSQEFLEKLERMIADMNPEFAKGILRHDRKTSERTENKIFQANPTEFVKEYQPTALFLSPTAESGVSIDEPRLIPYFSRVFCYASSNHARSVYQQLWRYRAKVTREIYVTRKAHIPDIPSIKSVEQVIMLQSKYGQDVAASIDLEQQLIHDQSPETAQQLAALKAYQQNPNNCHNVSFARYQTRSIASLLALRESLTLLLADHGHPIEMEELSERNADIVESFSKVRKQMEVETAVMLGTADGERFTVEQAIRVMGSSSATYKDTLDAKKVLLQDELPGVDLTDEFIHQVCVEHRGRLKSATKLHWMSYHPEVAEELDRRNFMKQLNSQFVLTHRLTNNRIQVQLLRDLGVFDLVDTYNVTSADYEAYDKALEKGRQVQRQRQSLRLEAKGLAGQIREVIQEQKAIQAKLTALGRKAHPRKAKLKGELEQLEQQKQALKYQKQGLVEAIEQQSQAFTQARYEQVEARMRMEIMVMTEGDQRLEDIKVKALEYRYQIYRHFRNVISDGQSAVAIVNKLIKRVAHELVKVGSEESVSLYVIRYSGNEVYKDQMLKAFQAKWDQRLEKNRPVCELCNKDSDLITETEKRSDIDEFDGGNDQEIGQLKVGNDGIEGGSEVILGVN
>NC_009933.1|WP_012168497.1|82959_84513_-|pentapeptide-repeat-containing-protein
MANQDQVDLIRQGTSLWNKWRWENPNEPIDLSGANLKGADLVRANLEDANLSGTDLRKASLIVANLNRSILCRADLRGANLGGAKLEEANLSEAFYSELTTWDRGFNPKQVEKLWLIGSGGNLEEANLSNLDLGDADLRGANLKNANLQNTDLLNADLGKASLIGANLSNSNLTQANFYKANLSTANLNEAVLLNANFIDADLSMAELKNSKMIRTVALGANFQRAILSGGCIQDWNINNRTNFEEVVCDFIFLKSIFNDATNEIVPTERRPIDPDKAFVSGEFAALIQKSLDTIDLIFLDNFDWEAFSQSFQKLRSQFNDQEIYIQAIEKKSLAFVIRLETSPDADKSAIETKAKELYGEHLKVLEEQYIEKMDLQDLTLDLVKESLAFERKKNTQLLSIVKTMANRDKVTQNFNAQVGNVAGVNEGIQQAAQHNYASEIKQTPAESAKEIQDLLAQLQEENPTDIQAVVEQKIKSDLTFRQRLRNALKEGGMETLKVLFAPIGIPIEMVRGWIDA
>NC_009933.1|WP_012168496.1|82217_82802_-|hypothetical-protein
MDIGLIFSAGKVASSIAALTGLIDSVDAKLDRLTKADLSAALISLDQASSSEKETISLLRESRLSFNRAIGLEKNFRLAVAYLGLSLCHYRLGDCKNSKNSLKEITLIYPDITAIQSTKAQLYDMYNVAIDPNPLNKLKLIAVYSQFNERLREETKTLIKIDKDINALVKVQLSVSEYINKPVKWLKQLGISEI
>NC_009933.1|WP_012168495.1|81116_81365_-|transposase
MYDFQVPFDNNQAERDIRMMKLKQKISGCFRSLAGGQQFCRVHGYISTLRKQDIPLLNAFRVIFASNPKVDWRISLSSNFLR
>NC_009933.1|WP_012168494.1|79837_81112_-|pentapeptide-repeat-containing-protein
MIDQGLLNLLIGDVKVWNSWRQMNATVELDLGGANLSGADLKSVNLSGTKLTSTNLSATNLKGANFSNADLTCAQLTSSNLWGANLVNANLSSAILMGANLSYANLGHANLSRVKLKRTNLIGTNFLSSNLKYANLTGACIQDWQINGDTSFDNVVCDYIYLRENQQERRPLNGNFSPGEFVALVQKSLETIDLIFIDGIDWQAFFYSFQQLRSQFVGQEIGIQAIEKKGNAFIVRLETSYEANKGAIESVQKELYKTKLQLSEAHGELRVYREMSDVIKTLAGKPMETTQNFNAQVGNVAAHNEGEMNNEQVISQTTINAEKIENLHSGSGNVNNYASPEQQVLVEVATEIQQYLQQLEQSNPAASETDQIQYVNIATKPEFKQRVVSAMQAGGEKALEEFVLENRYLKVIKATIKAWLTGNA
>NC_009933.1|WP_148216146.1|78234_79758_+|pentapeptide-repeat-containing-protein
MTNQVLVELLKRGIGVWNSWREENLYENLDFRRVQLSGSYLSEVDFSHANFEIAYLSSAKLSCANLEGINLNRAYLGGADLYSANLRGANLIRANFNDAHLKEADLTNANLSGAHLRGANLLNANLSGALLSRANLENADLSYANLENADLSYANLENADLSHANLKNADLSSTHLKRVIALDTSFLKSTLTGICIQDWNININTNFDDVICEYFFRSYNPDLTQPSNRHPLSRNFDPGEFAILIKMSLETIDLIFVDGIDWQAFLQSFQDLRSQFSEQEIAIQAIEKKGTAFVVRLETRPEADKNAIEAKAKELYSGKLLRMEQKYKSDLLAKESEIAIYKKQSAVLLEIVKLQATRPIAVEATAVAEKATNQTKIKDSTIGAMHSGSGNITNFSQAIGSNLHEITKIIKKLKKSAKNIPEEYQEDLSEDFDDLVDAINNSEKRTEKRLRKRIMALWAIVCAIAVGVAGATDFSNNLVDLAQKLNVPLTVEVIKQNPHVLQEPNQP
>NC_009933.1|WP_012168492.1|77484_78105_-|hypothetical-protein
MNPKLVSLKPKPTISSTGKPPINIESNPAYSDKTAFPTIARKDDQPVRRKPSPDVGTDERKRESAPIHIHREPDFVRRTQRGYTARETPGRVRPPRVSRAFESKFHALERRQKNLVQQTKQKGQLEYLTVSISNSGKFWITVEITGKPFITIPFETPEFCYECALELEDTFDVLQVIKLRPGETMERIEEMIGVWLDRERVAMSWG
>NC_009933.1|WP_012168489.1|70934_73025_-|pentapeptide-repeat-containing-protein
MANQEQVDLLKQGAEAWNQWREKNTGESIYLWGADLGGANLSGADLGGATLSGANLWDANLTYADLRGATLIYADLRGATLIGAALIGAALIGAALNGANLSDADLSGADLRNTKISAATKIDAKWKLVHELVNKGGEGKDLSGTDLSGANLSDADLSDADLSGADLSDADLSDADLRNTNLRNTKISAETKIDAKWKLVHELVNKGGEGKDLSSTDLSDANLSGTDLSDANLSGTDLSDANLSGADLSDADLSGTDLSDTNLSGTDLSDADLSDADLRNTKISAETKIDAKWKLVHELVNKGGEGKDLSGTDLSGADLSGADLSDADLSGADLSDANLSDADLSGADLRNTKISAETKIDAKWKLVHELVNKGGEGKDLSGTDLNDANLSGVNLRNSNLYRANFLGSKLQNAILTGACIQDWSINSKTGFEGVVCDYIYLKVNQEERRPFQGNFCPGEFVALVQKSLETIDLIFVDGIDWQAFFQSFQLLRSKFNEYEVGIQAIEKKGAAFVVRLEAPPEANKSAIETKAKELYGKQLKVLEEQFIEKMKLQGATLDLAKESLAFERQKNAQLLSMVQTMANKDKVTQNINAPVGNVAGVNEGIQQTTQHNYAPEIKQTPAESAKEIQDLLSQLQKTNPTDIQTVVEQRIKIDPTFRQRLQNALKEGGVETLKVLFAPIGIPIETVRGWIDAEGS
>NC_009933.1|WP_012168487.1|70372_70672_+|hypothetical-protein
MSVAVNSNKEHSSFLNFIPKFRRTLRTFHHTLDSNSPEFFIDSIDDQPGFYQMTSQGPRLRIGQSIEVEHSGQYQTYQVDDIEFYNELSDIWTAVLHRI
>NC_009933.1|WP_049783931.1|91082_91364_+|helix-turn-helix-domain-containing-protein
MKKVVINWKLAEVMQANGISPTDLAAEMKISRNAISKMRKHYMPRMDGEKLNNLLISLNTLRKPGKRPIRVSHLIVESYTLEEMERAKVGEST
>NC_009933.1|WP_012168502.1|91424_92288_+|hypothetical-protein
MLKTTLLSLGLLAITFSSALANPATIPIDKAFKHTQKLEVSDVDHLLDFTDTRYRVIKAFPSNPQQLRALSLSRNDHQQLLLKWTPNGTAKKASVFLRVMGPGGEQTITLLVKRSGNEPDNIRTAFVPSQTVSKDAVIGEVAEIPPKPTVAPIPNQLIRPNWKSHNSPKTAQPVKAPLTLTHPKSPPVLKLRATPKPIPRIAKVTTTGRPLIDRTTLDNKALANYLLRGLHRARGLRQINRHHDNYWFAQSMARYLKRGVSVDKALRWSRLPEKTFNDLLGHGGVSR
>NC_009933.1|WP_012168503.1|92372_93029_+|hypothetical-protein
MQSPFLQHTRHYAHKYGPQWSAPVLLVILTLCPVFLPLNPGTQIAWLEIMALVWSTALFLHLYQLLNIQTKLGLYLFFSGMIALVPSMVKAQNVGNAPSSACNSGFFLIGPMLGAVDTSLGWFLGGVLAYSLCAFMIALMIVFFLVVIVGLVMAGAESHNSKRTLFEVLSQYLNVIITMMVIASLVTVFNLQLSNNGNAAPIPVGGQNQPQGATSVLN
>NC_009933.1|WP_012168504.1|93040_96166_+|hypothetical-protein
MTQTEQIEKELRYGKINPYIGPTQFQVLSGQQIITLAASGCICFILGFSIGWFMAVFLWLGIFVLTVLALGKDYSRIFARMSKQRRYYSDRPNYQVKGGVPLMVIELPEPFKLSQLFRRQTKQKALKKIEPEFDLRAYGEMLLGEDIGFYLVHQDKHDRAMLIFGFTLKGIDPTLSEQDAMDRLQTIVMALQKIPGIELKFFWDVEGSADAVLLHQHDLVTHNDLDLLSEKLIKSEAQVAVDLAAEGKLVHSVIRVYAKYRLSLADDYAVKEDRLDKLLAHTQPLVGTFQEYLNPQPEGFSSKQAWEKVLDRAYQAGYIPTVKALTQMGVKPQPMSKEDLWAIDWEDTHAEPADPCPQSITYSEAGLSPFNEDQPLPYHILGELFSPERGLPAVPTPYLYTLYHPIKDQWAALVKINQLSTYNKIDNFLSIGYMKFLLQALEGFHGYRLISEITQIEPDSRLKLVNSAIKERNRKAIDAQLLHSTRNVQAETDVNELVDASRELSSGRWPLKVSLGIWVYRADKASLTAAVQDLIRRLPTSKTEQVSNHLMTHWISSHPFHWQSLFSKPQLRREEYQCNQGVPLMPLVHPQTIDKQGIPFVSRGVAIPVHLNTALKKNLIAIFGPMGVGKSVLMNRMILENIIHRIFTVVIDVPPGNGKSTYQPFLKQLQAINVAAAYFNIKEHIINVLAEIDTSWAGDLLSVQLLKKIKQNHLSLLRALVLGDDLDHPLYKTIKSVLALSYQDWRALSEIDQRYRIAKAAAFGSEPSQRMPILQDFVDYFPQWVRQYKQDKDCEDLELQAIAMIRTELEAVLTTDLGASINGINTFNFDLQTLVIGLTDLQDPQESVIYSMAAINLMELQSFRYPRSAIFGDEISTTFKYRSISIRFAEICTKGRKEAKNVVIAGTEENTLVQSEGGRDILNNLDAVFYGHCNPTAVENASKHLRLKPEVLSKYVRAEYAPNLAELCTSWYLRKGNQHYELLFYTSALMIALLCTQPEETAARDRILALYPDNPLQGYIKFGHLLKRAYKLNLPLSHIGA
>NC_009933.1|WP_148216153.1|96427_97315_+|hypothetical-protein
MFDILGKAQKGLKSYKFAEQVYKGITGKNANSITDGVFGILEQYGIIDPQKATTASNRSTPILIGQGNQGPAYATAGSIGALKLEPKEPYEWRVKALNENIVYKNAIQKTGDFVYSPEAQEILKVQDQVAADARDAAAAAAQGGLESVLASTQVKDQSIYASTVVGEYGTSAQSAKSTQAVNKLETKQNTEIANILAGNAFQLNAINESMVRNTSALGNIVTTQSILVDKQTVSQYLDAAQLRQNGQIFTTLNNHYSYEKRKDMYQHLAAADTSNLLHFPNLVEPQPNPSGQTQP
>NC_009933.1|WP_148216154.1|97346_98618_+|hypothetical-protein
MVLYQATHAHADFAEDLISDLEPSVAHDAFWDDLWNATFDRSTGISGDTQRIAFGAVGTVVRWVTLIALFVVLLHYGSGMMSSGTSLRKGNEFTIKSVFPVVVILALLANQFAGVHAVGMFVNQARLGITGEAYAQSEFATTFRSAIKDAYFSEKYRENVAFRAKQCNQIETPITTIPSLEEPTNPETPLTDEQRQYYKKVRCIQSMVDYIKTLQAKVEAECADGCVGTRVGIVKDLKRYGVQGVPAIVAENLDTFVIPIQKLGELAADAAKHGAQETYRLIFRAIQWAWTSFLNMGFYLTAVGAPITYAISLMPTKRHFLFDLNLFSLLMFSLAEFANIFCIGIVALMLQRPTLVDLGGYIFPLTYGLLAPLVSGSIFLGGFKAAASFRGGALGVASAAGGIAGGIATSAMISARNRREQYY
>NC_009933.1|WP_012168507.1|98693_99167_+|hypothetical-protein
MPLYLTLIVVFVAFAILLMVIRGGMAELNPLSGLMACVVLTLFAAYHRIFAGADQLSGLDSFFTLGCGLITCQLFIPEFRFWWSDFRFIYGMTVLFYFAFCWTFDHIYIVWFWFTGFVLFLLLVQFLFGVASSGGGRRIRGVCDPDSEFDYSIYDEW
>NC_009933.1|WP_012168508.1|99173_99851_+|hypothetical-protein
MTKKLSRFLPLLVVSALLLNILVCFSWFTQGARAQAPSQVYIQTDSGLVVKGKPVDPLYRSDEVVMRFAQEFVSVAYTWPMNGEGQNEGKLIYPLPMYTQAFKIHPDIRAEWLGRQHITYAKAKDPFANYVGKPQHTKTTITGAKIERMDPEAHEWDVRLYATQYRFDGQNNLIFNPVKVNKILTLRAVQGFRPNWQIADTDLGRMIDDALHSELLITNIVDLPT
>NC_009933.1|WP_012168509.1|99884_101237_+|hypothetical-protein
MPTDKRQVEEAKAALLDDPELNELLEENKIAEGRPINDLEKLVDPGDKVKHPYYLQPWFRIGSIAIPLIILGFVGYKIWGPKPPVVMALGDKDKQIIELTEKLQQSELEKAQLTQDNMGLTQAAELEPFQQRQKRLKQQAQKARQAKQKKPVPVGGKPVQRQNTVSLPRRLYRSPSPKSSFTPANPSPSLLAKGPSLSECVGYVERNINVPGCKRYQISQKPQSSPQTNSIVKNPTVPRPAYTPRPQTKPVKLAFASKSKSKPRKKVTPDYQVNFMAGEIQTVDQFEAEFYGAGQSATAPTRTSMKAKVIDHVEWLSPQEAQQMVIPLKITSGPHKGQMAEAKIQQMNGLQFTAHVVSINGQAIEPGTMEVRRKNTKYLRAQLKRQGGESFGDRVMGTVAAIGGEIATDQLVDVRGGSHISRLVSNPQRRTREVTQYWRFDGEVELVPVG
>NC_009933.1|WP_012168510.1|101348_101747_-|hypothetical-protein
MDYNKEAFNCAQKSTTAPTFLEARAILADIQIKKITNQDVLEYVQYCNELADFCIKYGISRDNMPTFLGVITGTDYRKAAGITIWESIKDLSIINGPAKMILSGLWMRLRLSGWFKLHDKLTKQYSPEGSKA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009933_1	1.1\|90317\|52\|NC_009933\|CRISPRCasFinder	90317-90368	52	NC_009933	Acaryochloris marina MBIC11017 plasmid pREB8, complete sequence	90317-90368	0	1.0
NC_009933_1	1.1\|90317\|52\|NC_009933\|CRISPRCasFinder	90317-90368	52	NC_009932	Acaryochloris marina MBIC11017 plasmid pREB7, complete sequence	59593-59644	4	0.923

1. spacer 1.1|90317|52|NC_009933|CRISPRCasFinder matches to NC_009933 (Acaryochloris marina MBIC11017 plasmid pREB8, complete sequence) position: , mismatch: 0, identity: 1.0

tcttttagttttttcatcaaaggctaacggtgcagttagcctcaatcggtgt	CRISPR spacer
tcttttagttttttcatcaaaggctaacggtgcagttagcctcaatcggtgt	Protospacer
****************************************************

2. spacer 1.1|90317|52|NC_009933|CRISPRCasFinder matches to NC_009932 (Acaryochloris marina MBIC11017 plasmid pREB7, complete sequence) position: , mismatch: 4, identity: 0.923

tcttttagttttttcatcaaaggctaacggtgcagttagcctcaatcggtgt	CRISPR spacer
gtctttggttttttcatcaaaggctaacggtgcagttagcctcaatcggtgt	Protospacer
 ..***.*********************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_009931

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

57236 : 88967

Synechococcus_phage(25.0%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012167412.1\|57236_58898_-\|transposase	IS5-like element ISAcma45 family transposase	NA	NA	NA	NA
WP_076611717.1\|59577_60461_-\|transposase	IS630-like element ISAcma31 family transposase	NA	NA	NA	NA
WP_012168136.1\|61721_62117_+	heme-binding protein	NA	NA	NA	NA
WP_012168137.1\|62382_64410_-	type II/IV secretion system protein	NA	NA	NA	NA
WP_012168138.1\|64580_65066_-	transcriptional repressor	NA	NA	NA	NA
WP_012167023.1\|65314_66523_-	GTP-binding protein	NA	NA	NA	NA
WP_012168139.1\|67044_67470_+	transcriptional repressor	NA	NA	NA	NA
WP_012167019.1\|67623_68052_-	transcriptional repressor	NA	NA	NA	NA
WP_041661492.1\|68439_69561_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_012168141.1\|69605_71285_+	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_012168143.1\|71551_71941_+	transcriptional repressor	NA	NA	NA	NA
WP_012168145.1\|72092_72599_+	TIGR02652 family protein	NA	NA	NA	NA
WP_012168148.1\|73439_73937_+	HNH endonuclease	F5B475	Synechococcus_phage	3.7e-30	42.7
WP_012168149.1\|74153_75830_-\|tRNA	methionine--tRNA ligase	K7Y9Y6	Megavirus	9.4e-94	37.9
WP_012168150.1\|76425_76695_+	YlxR family protein	NA	NA	NA	NA
WP_012168152.1\|76950_78255_-	serine/threonine protein kinase	A0A2I2L4T9	Orpheovirus	7.0e-12	28.4
WP_012168156.1\|79971_80451_+	hypothetical protein	NA	NA	NA	NA
WP_012168157.1\|80464_81130_+	hypothetical protein	NA	NA	NA	NA
WP_012166374.1\|81626_82871_-\|transposase	ISL3-like element ISAcma10 family transposase	A0A2D1GQC1	Lysinibacillus_phage	2.6e-24	26.1
WP_012168160.1\|83666_84788_+	alkene reductase	NA	NA	NA	NA
WP_012168162.1\|84937_85561_+	hypothetical protein	NA	NA	NA	NA
WP_012168164.1\|85900_86761_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_083776915.1\|87466_87613_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012168167.1\|87665_88967_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_009927

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1927 : 43740

Acidithiobacillus_phage(14.29%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012166885.1\|1927_3664_-\|transposase	IS21-like element ISAcma26 family transposase	NA	NA	NA	NA
WP_187152981.1\|3817_3985_+\|transposase	transposase	NA	NA	NA	NA
WP_012166887.1\|4355_5213_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.4e-47	41.6
WP_012166248.1\|5429_7103_-\|transposase	ISL3-like element ISAcma23 family transposase	NA	NA	NA	NA
WP_148215844.1\|7422_7962_-	hypothetical protein	NA	NA	NA	NA
WP_012166891.1\|8278_10009_+\|transposase	IS21-like element ISAcma38 family transposase	NA	NA	NA	NA
WP_083776823.1\|9905_10553_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	1.0e-27	35.1
WP_012166895.1\|11017_12238_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_012166896.1\|12572_13772_-	YcaQ family DNA glycosylase	NA	NA	NA	NA
WP_148216031.1\|13768_13834_-	DUF4113 domain-containing protein	NA	NA	NA	NA
WP_012166899.1\|15685_16039_-	hypothetical protein	NA	NA	NA	NA
WP_148216032.1\|16070_16217_-	hypothetical protein	NA	NA	NA	NA
WP_012166900.1\|16335_16674_+	DUF1816 domain-containing protein	NA	NA	NA	NA
WP_012166902.1\|16954_17710_+	lipid-binding SYLF domain-containing protein	NA	NA	NA	NA
WP_012166905.1\|18458_18716_-	DUF1816 domain-containing protein	NA	NA	NA	NA
WP_012166907.1\|19205_19853_+	ParA family protein	A2I303	Vibrio_virus	8.3e-22	37.2
WP_012166908.1\|19845_20796_+	ParB/RepB/Spo0J family partition protein	S5VTK0	Leptospira_phage	7.2e-06	26.2
WP_012166912.1\|22496_22967_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_012166913.1\|22991_23510_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012166915.1\|23690_24281_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012166916.1\|24389_24797_+	hypothetical protein	NA	NA	NA	NA
WP_012166917.1\|24892_25516_+	hypothetical protein	NA	NA	NA	NA
WP_012166919.1\|25637_26090_+	hypothetical protein	NA	NA	NA	NA
WP_012166920.1\|26187_26925_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_012166921.1\|27423_28518_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012166923.1\|28768_29176_-	RidA family protein	NA	NA	NA	NA
WP_012166924.1\|29498_29756_+	hypothetical protein	NA	NA	NA	NA
WP_012166928.1\|30669_31224_+	hypothetical protein	NA	NA	NA	NA
WP_012166930.1\|31466_32441_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	1.2e-19	34.0
WP_148216033.1\|32616_33204_-	hypothetical protein	NA	NA	NA	NA
WP_012160833.1\|33294_34404_+\|transposase	IS630-like element ISAcma14 family transposase	NA	NA	NA	NA
WP_012160919.1\|34477_35788_+\|transposase	IS701-like element ISAcma8 family transposase	NA	NA	NA	NA
WP_063710576.1\|35759_36503_-	hypothetical protein	NA	NA	NA	NA
WP_012166934.1\|36566_37238_+	ABC-2 family transporter protein	NA	NA	NA	NA
WP_012166935.1\|37242_37779_+	ABC-2 family transporter protein	NA	NA	NA	NA
WP_148216016.1\|37753_38038_+	ABC-2 family transporter protein	NA	NA	NA	NA
WP_041661255.1\|38083_38911_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012166938.1\|38959_39508_+	GNAT family N-acetyltransferase	G9BWD5	Planktothrix_phage	2.0e-32	45.8
WP_012166939.1\|39659_40262_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_012166940.1\|40305_41457_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_012166941.1\|41576_42299_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012166942.1\|42495_43740_+\|transposase	ISL3-like element ISAcma10 family transposase	A0A2D1GQC1	Lysinibacillus_phage	7.6e-24	26.1

DBSCAN-SWA_2

257740 : 299421

Escherichia_phage(16.67%)

integrase,transposase

attL 274658:274676|attR 306859:306877

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071820013.1\|257740_257947_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012167185.1\|258535_260143_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012167186.1\|260291_264746_-	NACHT domain-containing protein	NA	NA	NA	NA
WP_012167187.1\|264975_265548_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	1.9e-33	43.3
WP_012167189.1\|265903_266200_-	hypothetical protein	NA	NA	NA	NA
WP_012167190.1\|266189_266798_-	ParA family protein	W8ECJ6	Mycobacterium_phage	7.8e-06	25.5
WP_012167192.1\|267416_268295_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012167193.1\|268310_269240_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012167197.1\|271012_271495_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_012167198.1\|271576_272473_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012167199.1\|272696_274862_+\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	6.8e-36	22.3
274658:274676	attL	NA	NA	NA	NA
WP_187152965.1\|275364_275565_-	hypothetical protein	NA	NA	NA	NA
WP_012166345.1\|275473_277204_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-92	39.1
WP_012167201.1\|278229_278568_-	hypothetical protein	NA	NA	NA	NA
WP_012167204.1\|279355_279697_-	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	3.1e-20	43.4
WP_012167205.1\|279693_279948_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_012167206.1\|280024_280672_-	hypothetical protein	NA	NA	NA	NA
WP_012167207.1\|280655_281186_-	hypothetical protein	NA	NA	NA	NA
WP_012167208.1\|281187_281598_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_012167209.1\|281594_281837_-	hypothetical protein	NA	NA	NA	NA
WP_187152978.1\|282033_284133_-	NACHT domain-containing protein	NA	NA	NA	NA
WP_012167211.1\|284524_284848_+	hypothetical protein	NA	NA	NA	NA
WP_012167212.1\|284837_285281_+	type II toxin-antitoxin system YhaV family toxin	Q8HA46	Vibrio_phage	7.9e-08	34.1
WP_012167214.1\|286935_287829_+	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_012167215.1\|288168_291237_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_012166248.1\|292097_293771_-\|transposase	ISL3-like element ISAcma23 family transposase	NA	NA	NA	NA
WP_187152979.1\|293805_293940_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012167218.1\|294719_296378_+	ferritin-like protein	NA	NA	NA	NA
WP_187152980.1\|296582_297029_-	hypothetical protein	NA	NA	NA	NA
WP_012167220.1\|297201_298668_-	tyrosinase family protein	NA	NA	NA	NA
WP_187152986.1\|299304_299421_+\|integrase	integrase	NA	NA	NA	NA
306859:306877	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NC_009926

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

118964 : 282105

106

Tupanvirus(26.32%)

integrase,transposase

attL 114714:114729|attR 128529:128544

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
114714:114729	attL	NA	NA	NA	NA
WP_041661170.1\|118964_120014_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012166644.1\|120778_121225_-	CopD family protein	NA	NA	NA	NA
WP_012166645.1\|121347_122028_-	plastoquinol terminal oxidase	H8ZJQ8	Ostreococcus_tauri_virus	2.9e-49	52.5
WP_012166646.1\|122074_124387_-	nitric-oxide reductase large subunit	NA	NA	NA	NA
WP_012166648.1\|124681_125374_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_049783871.1\|126770_127274_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_012166652.1\|127276_129640_+	Fe(2+) transporter permease subunit FeoB	NA	NA	NA	NA
128529:128544	attR	NA	NA	NA	NA
WP_012166653.1\|129732_130119_+	FeoC-like transcriptional regulator	NA	NA	NA	NA
WP_012166654.1\|130141_130417_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_012166655.1\|130937_131465_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
WP_012166656.1\|131833_132097_+	hypothetical protein	NA	NA	NA	NA
WP_012166657.1\|132117_132576_+	hypothetical protein	NA	NA	NA	NA
WP_012166658.1\|132674_133478_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_012166659.1\|133474_134131_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.3e-10	29.4
WP_012166660.1\|134576_135851_-	MFS transporter	NA	NA	NA	NA
WP_041661174.1\|135860_136670_-	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012166662.1\|136834_139429_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_012166664.1\|139651_140749_-	sucrase ferredoxin	NA	NA	NA	NA
WP_049783859.1\|140958_141945_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012166666.1\|141941_142775_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.7e-16	34.1
WP_012166667.1\|142771_143815_-	iron ABC transporter permease	NA	NA	NA	NA
WP_049783860.1\|143811_144837_-	iron ABC transporter permease	NA	NA	NA	NA
WP_012166669.1\|144882_145287_-	biopolymer transporter ExbD	NA	NA	NA	NA
WP_012166670.1\|145270_145924_-	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_012166672.1\|146345_147875_+	hypothetical protein	NA	NA	NA	NA
WP_012166673.1\|148067_149390_+	MFS transporter	NA	NA	NA	NA
WP_012166674.1\|149739_150735_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041661136.1\|150861_153507_+	TonB-dependent receptor	NA	NA	NA	NA
WP_012166676.1\|153512_154763_+	MFS transporter	NA	NA	NA	NA
WP_012166677.1\|154922_156692_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.1e-31	28.9
WP_041661137.1\|156684_158400_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.1e-24	26.7
WP_041661138.1\|158826_159744_+	phosphotransferase	NA	NA	NA	NA
WP_012166681.1\|160074_160704_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012166682.1\|161084_161675_+	hypothetical protein	NA	NA	NA	NA
WP_012166684.1\|162110_162524_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012166685.1\|162587_163034_+	hypothetical protein	NA	NA	NA	NA
WP_012166686.1\|163068_164331_-	MFS transporter	NA	NA	NA	NA
WP_012166687.1\|164561_165623_-	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012166688.1\|165651_166695_-	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012166689.1\|166694_169262_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_148215646.1\|170341_171185_+\|transposase	IS1-like element ISAcma3 family transposase	NA	NA	NA	NA
WP_012166691.1\|171167_171323_-	hypothetical protein	NA	NA	NA	NA
WP_187152974.1\|173286_174144_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.5e-55	45.0
WP_012166696.1\|175787_176156_-\|transposase	transposase	NA	NA	NA	NA
WP_012166697.1\|176260_176764_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012166698.1\|176785_179353_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_012166699.1\|179497_180505_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_049783861.1\|180630_180942_-\|transposase	transposase	A0A1C9LZZ3	Mycobacterium_phage	1.2e-15	41.8
WP_012166702.1\|182665_183289_+	TMEM165/GDT1 family protein	NA	NA	NA	NA
WP_041661141.1\|183543_183828_-	hypothetical protein	NA	NA	NA	NA
WP_012166707.1\|185722_186256_+\|transposase	transposase	NA	NA	NA	NA
WP_083776808.1\|186207_186921_+\|transposase	transposase	NA	NA	NA	NA
WP_012166709.1\|186952_187114_+	hypothetical protein	NA	NA	NA	NA
WP_012166710.1\|187144_188386_+\|transposase	transposase	NA	NA	NA	NA
WP_012166713.1\|188728_190462_+	hypothetical protein	NA	NA	NA	NA
WP_012166716.1\|191777_191927_-	DUF4277 domain-containing protein	NA	NA	NA	NA
WP_012166719.1\|192228_192993_+	thioesterase	NA	NA	NA	NA
WP_012166722.1\|193820_194939_+\|transposase	transposase	NA	NA	NA	NA
WP_049783862.1\|195316_196396_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041661143.1\|196654_198205_+	3-oxoacyl-ACP synthase	NA	NA	NA	NA
WP_012166726.1\|198212_201824_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	5.8e-56	26.5
WP_012166727.1\|201841_206839_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	1.2e-43	39.2
WP_083776817.1\|206897_208628_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_012166728.1\|208624_212977_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.6e-44	30.1
WP_012166729.1\|213256_217915_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	3.2e-51	39.6
WP_012166730.1\|217911_226071_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	5.3e-174	28.0
WP_012166731.1\|226076_227525_+	non-ribosomal peptide synthetase	NA	NA	NA	NA
WP_012166732.1\|227511_228762_+	diaminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA
WP_049783863.1\|228844_238093_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.6e-190	28.9
WP_012166734.1\|238089_242811_+	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	1.6e-93	26.7
WP_012166735.1\|242846_243734_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_071820003.1\|243804_244518_-\|transposase	transposase	NA	NA	NA	NA
WP_012166737.1\|244469_245003_-\|transposase	transposase	NA	NA	NA	NA
WP_012166739.1\|245206_246682_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_012166740.1\|246678_247143_+	hypothetical protein	NA	NA	NA	NA
WP_049783864.1\|247160_247742_+	hypothetical protein	NA	NA	NA	NA
WP_041661191.1\|247778_248024_+	acyl carrier protein	NA	NA	NA	NA
WP_012166743.1\|248013_248478_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_012166744.1\|248488_250030_+	benzoate-CoA ligase family protein	A0A2H4PQU7	Staphylococcus_phage	1.8e-38	27.2
WP_012166745.1\|250074_251394_+	chorismate-binding protein	NA	NA	NA	NA
WP_012166746.1\|251403_251844_+	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_041661194.1\|251922_252999_+	sucrase ferredoxin	NA	NA	NA	NA
WP_012166748.1\|253017_254367_+	MFS transporter	NA	NA	NA	NA
WP_012166749.1\|255154_255982_+	ParA family protein	A0A0K2FLP4	Brevibacillus_phage	3.6e-14	27.8
WP_041661145.1\|255978_256938_+	ParB/RepB/Spo0J family partition protein	H9YPI3	environmental_Halophage	3.6e-05	36.6
WP_012166751.1\|257036_257261_+	hypothetical protein	NA	NA	NA	NA
WP_012166752.1\|257476_257731_-	thermonuclease family protein	NA	NA	NA	NA
WP_012166345.1\|258795_260526_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-92	39.1
WP_187152965.1\|260434_260635_+	hypothetical protein	NA	NA	NA	NA
WP_187152968.1\|264085_264742_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.0e-31	36.1
WP_012166527.1\|264644_266381_-\|transposase	IS21-like element ISAcma26 family transposase	NA	NA	NA	NA
WP_071820006.1\|267268_267346_-	DUF4351 domain-containing protein	NA	NA	NA	NA
WP_012166755.1\|267396_267762_-	hypothetical protein	NA	NA	NA	NA
WP_012166756.1\|267773_268499_-\|transposase	transposase	NA	NA	NA	NA
WP_012166758.1\|268788_269334_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_049783873.1\|269440_270031_+	hypothetical protein	NA	NA	NA	NA
WP_012166761.1\|270436_270886_+	transcriptional repressor	NA	NA	NA	NA
WP_012166762.1\|271499_272117_+	TMEM165/GDT1 family protein	NA	NA	NA	NA
WP_012166763.1\|272222_272762_-	hypothetical protein	NA	NA	NA	NA
WP_012166764.1\|272792_273605_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012166765.1\|273984_274326_-	hypothetical protein	NA	NA	NA	NA
WP_148216007.1\|274375_275647_-	MFS transporter	NA	NA	NA	NA
WP_012166767.1\|275667_278232_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_012166768.1\|278368_279370_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012166770.1\|279836_280805_-	carbonic anhydrase	NA	NA	NA	NA
WP_012166772.1\|281238_282105_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NC_009925

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_009925_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009925_1

2028067-2028372

Orphan

Consensus_repeat	Method
AGTAGCCTGCCACCCGAAATCGGAAAGCTC	CRISPRCasFinder

4 spacers

The CRISPR arrays of NC_009925_1

>merge|NC_009925|1|2028067-2028372|CRISPRCasFinder
AACACCCTTCCCCCTGATATCGGACAGCTTAAAAATCTAAAATCCCTGTCTATCCATGGCAATACCCTCAGTAGCCTGCCACCCGAAATCGGAAAGCTCAGCAGTCTGAAATCGCTCATTCTTAGAAGTAATCGATTGAGTAGCCTACCACCCGAAATCGGAAAGCTCCATAATCTGAACTCGCTCAATCTGGTTGAGAATCAACTGAGTAGCCTACCAATCGAAATGAGAAAACTCCAGAATTTAAGGGAGTTAGATCTTAGAAATAATCGACTGAGAAACCTACCGCTAGAAATGGGGCAGCTC

>NC_009925|1|1|2028067-2028372|CRISPRCasFinder
AACACCCTTCCCCCTGATATCGGACAGCTT	AAAAATCTAAAATCCCTGTCTATCCATGGCAATACCCTC
AGTAGCCTGCCACCCGAAATCGGAAAGCTC	AGCAGTCTGAAATCGCTCATTCTTAGAAGTAATCGATTG
AGTAGCCTACCACCCGAAATCGGAAAGCTC	CATAATCTGAACTCGCTCAATCTGGTTGAGAATCAACTG
AGTAGCCTACCAATCGAAATGAGAAAACTC	CAGAATTTAAGGGAGTTAGATCTTAGAAATAATCGACTG
AGAAACCTACCGCTAGAAATGGGGCAGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009925.1\|WP_071819941.1\|2023495_2023642_-\|DUF4089-domain-containing-protein	unknown	unknown	gnl\|CDD\|372560
NC_009925.1\|WP_071819940.1\|2018008_2018101_+\|photosystem-II-reaction-center-protein-T	unknown	unknown	unknown
NC_009925.1\|WP_012162542.1\|2023867_2025379_+\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NC_009925.1\|WP_012162551.1\|2036952_2038518_+\|NAD(P)H-quinone-oxidoreductase-subunit-N	unknown	unknown	gnl\|CDD\|235044
NC_009925.1\|WP_012162535.1\|2018816_2020094_-\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|236517
NC_009925.1\|WP_012162544.1\|2025630_2026161_-\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_012162547.1\|2029760_2030489_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_009925.1\|WP_012162548.1\|2030522_2032244_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238738
NC_009925.1\|WP_012162549.1\|2032357_2033695_-\|DUF2330-domain-containing-protein	unknown	unknown	gnl\|CDD\|226836
NC_009925.1\|WP_012162550.1\|2033874_2036553_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NC_009925.1\|WP_012162553.1\|2041459_2041774_-\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_012162538.1\|2021010_2021475_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_009925.1\|WP_012162537.1\|2020227_2020992_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|225023
NC_009925.1\|WP_012162534.1\|2018203_2018782_-\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NC_009925.1\|WP_012162554.1\|2042065_2042845_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|376814
NC_009925.1\|WP_012162546.1\|2028642_2029752_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|379243
NC_009925.1\|WP_012162552.1\|2038698_2039748_-\|ferredoxin--NADP(+)-reductase	unknown	unknown	gnl\|CDD\|99804
NC_009925.1\|WP_012162540.1\|2022125_2023499_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-A	unknown	unknown	gnl\|CDD\|236409
NC_009925.1\|WP_012162539.1\|2021520_2022036_-\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_010474534.1\|2040113_2041334_+\|geranylgeranyl-reductase	unknown	unknown	gnl\|CDD\|177713

Protein	Function_ID	Function_description	E-value
NC_009925.1\|WP_071819941.1\|2023495_2023642_-\|DUF4089-domain-containing-protein	gnl\|CDD\|372560	pfam13318, DUF4089, Protein of unknown function (DUF4089). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length.	4.308e-16
NC_009925.1\|WP_012162542.1\|2023867_2025379_+\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	0
NC_009925.1\|WP_012162551.1\|2036952_2038518_+\|NAD(P)H-quinone-oxidoreductase-subunit-N	gnl\|CDD\|235044	PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit N.	0
NC_009925.1\|WP_012162535.1\|2018816_2020094_-\|valine--pyruvate-transaminase	gnl\|CDD\|236517	PRK09440, avtA, valine--pyruvate transaminase; Provisional.	0
NC_009925.1\|WP_012162547.1\|2029760_2030489_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00391651
NC_009925.1\|WP_012162548.1\|2030522_2032244_-\|VWA-domain-containing-protein	gnl\|CDD\|238738	cd01461, vWA_interalpha_trypsin_inhibitor, vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.	4.2657e-23
NC_009925.1\|WP_012162549.1\|2032357_2033695_-\|DUF2330-domain-containing-protein	gnl\|CDD\|226836	COG4402, COG4402, Uncharacterized protein conserved in bacteria [Function unknown].	0
NC_009925.1\|WP_012162550.1\|2033874_2036553_-\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NC_009925.1\|WP_012162538.1\|2021010_2021475_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.39571e-11
NC_009925.1\|WP_012162537.1\|2020227_2020992_-\|serine/threonine-protein-kinase	gnl\|CDD\|225023	COG2112, COG2112, Predicted Ser/Thr protein kinase [Signal transduction mechanisms].	2.26256e-28
NC_009925.1\|WP_012162534.1\|2018203_2018782_-\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	2.20598e-58
NC_009925.1\|WP_012162554.1\|2042065_2042845_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|376814	pfam02548, Pantoate_transf, Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.	2.78966e-162
NC_009925.1\|WP_012162546.1\|2028642_2029752_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|379243	pfam13531, SBP_bac_11, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	1.43944e-18
NC_009925.1\|WP_012162552.1\|2038698_2039748_-\|ferredoxin--NADP(+)-reductase	gnl\|CDD\|99804	cd06208, CYPOR_like_FNR, These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then transfers two electrons and a proton to NADP+ to form NADPH. CYPOR serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases, sulfite reducatase, and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal FNR-like FAD and NAD binding module, an FMN-binding domain, and an additional connecting domain (inserted within the FAD binding region) that orients the FNR and FMN -binding domains. The C-terminal domain contains most of the NADP(H) binding residues, and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule, which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	5.09594e-161
NC_009925.1\|WP_012162540.1\|2022125_2023499_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-A	gnl\|CDD\|236409	PRK09201, PRK09201, AtzE family amidohydrolase.	0
NC_009925.1\|WP_010474534.1\|2040113_2041334_+\|geranylgeranyl-reductase	gnl\|CDD\|177713	PLN00093, PLN00093, geranylgeranyl diphosphate reductase; Provisional.	0

>NC_009925.1|WP_012162544.1|2025630_2026161_-|hypothetical-protein
MQERTKLSICISILRWLIFVYFGAVGLWRLQRFLPLTESSSTDPSCRQAILQGEEQINQLPQVKLQKGYWDKVGFMYDPPAGRPQKYQYILEKTSGIRNVFSSPQFMSKISQNIMDNCSDVSMVGFSDARFVADINYGFFAQNAVKKVCRPDPLFFVSIHITYPFGVRNWSHDGCN
>NC_009925.1|WP_012162542.1|2023867_2025379_+|UbiD-family-decarboxylase
MARDLRKFIQRLEERGQLKRIQALVDPKLEIAEISDRMLQQGGPGLLFENVKGSDYPVAVNLLGTVERTCWAMNMESQSELEDLGKKLAMLQQPKPPKKLNQFIDFGKVLFDVVKAKPQRDLLPPCHQVVLKDEQVDLNKIPMIQPYIGDGGKVVTFGLVITKDCETGTPNVGVYRLQLQSKNTMTVQWLSVRGGARHLRKAAEQGKKLEIAIAVGIDPLIIMAAATPIPVDLSEWLFAGLYGGSGVHLAKCKTVDLEVPAQSEFVLEGTITPGETGVDGPFGDHMGYYGGINEAAPLIRFHCMTHRKNPIYLTTFSGRPPKEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKAAVISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDVNIRDPRQVVWAVSSKVDPVRDVFILPETPFDTLDFASAKIGLGGRMGIDATTKIPPETDHPWGEPLKADPDVAAMVDRRWAEYGLADLNLGEVDPNLFGYEMP
>NC_009925.1|WP_071819941.1|2023495_2023642_-|DUF4089-domain-containing-protein
MAKLLGLSIPPEQLPGVVESFEQIHRIAQPVLDFPLPDTLEAAPQFEP
>NC_009925.1|WP_012162540.1|2022125_2023499_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-A
MSLTAAQITHQVKTGERSATSIVEAALTHISSREDHNCFTTLLESSALANAETLDRKLAAGETTGPLAGVPFAVKNLFDIAGTVTLAGSKINQSQPPATQDATAVARLKAAGAILVGALNMDEYAYGFVTINHHYGVTPNPHDPTRMSGGSSGGSAAAVAVGLVPLTLGSDTNGSIRVPASLCGVYGFKPTYGRLSRAGVYLFSSSLDHIGPFARSVEDIALAFEVLQGSDPRDPVCTDRPPVAPDKSGDMTGIRVAIATDHFARGMTSTVAQALDKVSSALQVTQTVTLPESARSRAAAYLITASEGSQLHLQRLQTRLQDFDPATRDRFVAGAMMPNSWYLQAQRFRRWYRDQVREIFKTVDLIIAPTTPCPAPLIDQTTMELDGQTVPIRPHLGFYTQPLSFIGLPVLSVPIFLPGELPVGIQLIARPYDENTIFKAAVTLESQGITEAKIAHA
>NC_009925.1|WP_012162539.1|2021520_2022036_-|hypothetical-protein
MATLQYLNLQSTQTLRQGIYEFHQAEVIENDASDTVAPELLADIDMHDAIHVLFGCPTHLDGEILAHVWTALGTTVSLQAMHRVNRHQDHRSVLAEIGHWHLLKTWLKSIPQILMTVLRAFRMKRRWPAENYAAYLDQRLCDLRHEFKIHIPPQSSHDGRAGAALRTVHSS
>NC_009925.1|WP_012162538.1|2021010_2021475_-|GNAT-family-N-acetyltransferase
MDSPHFQVANDSHVAALLPLVRAYHEFEQIGLSEQQRCDAVLPLLSPDSQVGRVWLIFISQQVVGYVALCFGYSIELSGRDAFIDELFLVESARGQDIGKQVLEFVIRQAASLDVAALHLEVSRANNRAKRLYSQAGFLARDRYHLMTFKVASN
>NC_009925.1|WP_012162537.1|2020227_2020992_-|serine/threonine-protein-kinase
MDLTGLTAVPLAEILQSPQQRLLAYPDQQVSCDRISELSDLGITAIYDWGPKQIQGWHCLGLGYCGLVLLAQHQGQQVALKGRRIDASRPSFAQEASMLTLANTHQVGPQLLGNSPNFLLMDYVVGQPLLAWLQSTPTLTRTTLKAQLNQLLWQAFQLDQAGLDHGNLRCVTAHSIVTTQGPVLLDFSSASTTRRPANVTSLTQGLFWGTTIASLLVPHWFHPDQQHCIERLRHYKHQPTTENFQRLLDLLFDS
>NC_009925.1|WP_012162535.1|2018816_2020094_-|valine--pyruvate-transaminase
MPPTLSQIGNQMSALTGVRAIMKDIIETLRANPDESFINLSAGNPVILPEVEQLWRDCTTQLLASPDYGEVVCRYGTSQGYQPLVDAIQKDFNQRYGLNLTDRQILITPGSQALYFLAANAFGGATETGRLKKIVLPLSPDYTGYGGICLTPEALKAYQPTLEIDETAHRFKYRPDFEQLHFDETTGCIIFSRPCNPTGNVLSKAEVKQIADLAAPFNIPVLIDSAYGPPYPSLNYTDIAPILGNNIVHCMSLSKAGLPGERVGIAIGDERIIQILEAFQTNVCIHSGRYGQAIAAQAIQSGALAEISVQVIRPYYQAKLALLQSTLDQHMPSTLPWFLHLGEGAIFAWLWLKELPISDWQLYQQLKRVGVIVVPGHSFFPGLSQDWPHKHQCLRISLTATDEEITIAMQRLVPVIEEVYRSNNA
>NC_009925.1|WP_012162534.1|2018203_2018782_-|ribosome-maturation-factor-RimM
MPVSDSLSPDLPNDDTSEEWLEVGTIVGAHGLNGEVKVYPDSDFPERFTQPGLRWLVSPTEASTPEEIQLIRGRFVERKGIYVVKLANVNFRDQSEALKGTKLLVRSNDRPTLAEGEYYLSDLIGVTVVDHQTQAVVGSVVSLASAGNDLLEIQLDNTTKTILLPFVSALVPIVDIATKRIEITPPKGLIPE
>NC_009925.1|WP_071819940.1|2018008_2018101_+|photosystem-II-reaction-center-protein-T
MDVIAYVFILACLIGLFFFAVFFREKPTRI
>NC_009925.1|WP_012162546.1|2028642_2029752_-|substrate-binding-domain-containing-protein
MVKSQRSLYISLAIIAASLGLTFYPLPDDQVQTLVVVSGSELEPPLKKLIETFHQQQSKIRIDLKVQGSLDMVNRFIDDRNDFQPTVLIPANQDTLKRLEQRWTAQSSGPAFYGDPTPVAKTRLVAITWPARGKALFPDGKFSWNRLETAMKAQQWGSFGGSANWGSFDFVMTDPTRSNSGQMTLSLWLSHKLQTSSLQAADLNSPIAQSAVSTLKRSIYQPARSSDILMQEFVVRGANDADIITNYESVALNRWEESKVTQGQPYQIYEINPTVENKPTAAIVRRQVDEPTAQKAQDFIDYLSQPAQQKILIEYGFRPVHPDVKLEENATALWKQDTGIALKPKAQVMDSPTVPVLKEVGRLWERSQP
>NC_009925.1|WP_012162547.1|2029760_2030489_-|hypothetical-protein
MKLVNPLYHPLAVLAGGIVLVGGVRIAKLNHFVMLPLAAGVATIGAGVIASESSLGAKPKPRSPSVAKELGNLRTQANKLAHKAQVLKTEAQNLLTQSSQMELLGTLQYACDRTTELPQKIEAMAERLHGDDSILSVQELQQQRVTVQKKLAQSSGATQQQLQQLDQSLQRNISLAQQGQDARQAQLLSLSQLIAESAGVLQAMQNQLRSANLAEASQSAELKSLSDELRDFQENLDVLVLT
>NC_009925.1|WP_012162548.1|2030522_2032244_-|VWA-domain-containing-protein
MAKQTTRKILLRCQAAVLVSLSAACSGGGPTGSSSSSPGMEVTFLVGSAMGDFCQQSMERFNQTGPKLKDGSSFTVKCVAKGSGDIVSELLTQANALKNGSVSAEDPSWPTLVSLDGDIYVDQLAYQFSQLFPGQNYLPTVADAPLLANSPMVFMVREDLAQSLRKTKDPFQALLTAKSHKDLDAGSQPLPLRYVHTAPTRSNSGLQTLVAQFASVSGKRPDQLTVADVGAHQGKVGEIQQKITRYGTSTTSLAKAMVANGPFWASVGSVYESSVIAANAQVPAGQPRYQAVYPGITYTSNMRGVLSTGPWVSPAEKEAAEQIIRYIRQPETQQIGTTLGLRPGTPGVALGNKFTQTWGVEAQPKYDSFRVPKPEVVEAMLQSWQTAAKKPSQVVIVVDSSGSMTGTKLAAVQSTLQTYLKGLGPKEKVTLIDFDSVVRKPVSVDGSPEGQSKGLEFVVALKADGNTKLYDSILAAQTWLTQNLRPNAINAVIVLTDGEDSGSGQQLPQLLSALKKSGFEGEQRIAIFTVGYGNAGDFAPDVLKQIAEANGGYYRQGDPASIAQLMADLQVEF
>NC_009925.1|WP_012162549.1|2032357_2033695_-|DUF2330-domain-containing-protein
MKMKRFLSACLVAVLMWTSLSPNALAFCGFYVAKADTALYNEASQVAIAKDGSRTVLTMANDFKGDVKDFAMVVPVPVLLQEDQVHVGDPTILQRLDDFSAPRLVEYFDENPCQVFRKSLDRELSAAPSSAPLQESRTEADLGVTVEAQFTVGEYDIVILSAKESNGLQTWLNRNGYKIPRGARSLLKPYIRQNMKFFVAKVNLEEFEKSEFQKLRPLQMAFDSPKFMLPIRLGMINANTEQDLIVYLLSPKGQAELVNYRTANIPTDAEIPEFVKDEFGEFYTAMFETAHAKAGKRVAFREYAWDMSNCDPCSATPLNPEELRKAGVFWLPERPQGDFVVPPRSTGVFITRLHVRYSRDKFPEDLVFQETSNRQLFQGRYVMRHPYKQKADCPAGRRYKQSLPARFEKEAQTLAKLTGWNIQDIRQKMDFQNPKPEPWWKRLWK
>NC_009925.1|WP_012162550.1|2033874_2036553_-|type-I-DNA-topoisomerase
MSTLVIVESPTKAKTIRNYLPSGYRVEASMGHVRDLPRTASEIPAAVKGEKWSSLGVNVQSDFEPLYVVPKDKKKIVKELKEALKNSDELVLATDEDREGESISWHLLQLLKPKVPTKRMVFHEITDEAIKAALTNCREVDQRLVRAQETRRILDRLVGYTLSPLLWKKIAPSLSAGRVQSVAVRLLVKRERERRAFRQGSYWDLKAALSKDKSSFESRLVTLADKRLATGNDFDENTGQIIAGRDVVLLNEEETLALQARLTDKTWSVAGVDERPSTRKPAPPFITSTLQQEANRKLRLSARETMRVAQSLYEKGFITYMRTDSVNLSQQAIAAARSCVEDLYGKNYLSPEPRQYKTKSKGAQEAHEAIRPAGQTFRTPKETDLQGAESKLYDLIWKRTVATQMAEARQTHITVHLEVEDAGFRSTGKRIDFPGFFRAYVEGSDDPDAALDDQEVLLPSLKQGDTPECTELSPIGHETQPPARFTEASLVKMLEKEGIGRPSTYASVIGTIIDRGYAQRQANALVPTFTAFAVTALLEQHFPDLVDLSFTARMERRLDGISTGEVEWLPYLSDFYLGDEGLETLVKTRQDQIDPGEARTIDLDNLEAKVRIGRFGPYIETEHEEKPVKASLPKDMTPADLTPEQIEQLLKQKLEGPEKLGFHPEKGEPIYILLGAYGPYVQLGDVTEENKKPKRASLPKGVAMESVTLDMAVELLSLPRLLGQHPDTGCKVQVGLGRFGPYVVHDQGKEGKDYRSLKKEDNLFTISFERALELLAMPKGTRGRRGTKKALKELGSHPEDEAPVNVYDGPYGPYIKHNKTNVSLPEGKKVEDVTLEMALPLLAEKASTKGKKKTSRAKSTTKKKTTKKTTAKKTTTKKTAAKKTTAKKTTKS
>NC_009925.1|WP_012162551.1|2036952_2038518_+|NAD(P)H-quinone-oxidoreductase-subunit-N
MDVANLASQLNATTILPEGVLVISLILVLLGDITFGRSSAKWTPYLAIASLAACLYLLYTQWDQANPIGFLGSFNADNLSIVFRAIIALSTLVTILMSVRYIEQSGSSIGEFMTVLLTATVGAMFLCGAEELVMIFISLETLSIASYLMTGYMKRDSRSNEAALKYLLIGAASSAVFLYGLSLLYGLSGGKTHLDDIALALTDTSKSLALVISLVFVIASVSFKIAAVPFHQWTPDVYEGSPTPVVAFLSVGSKAAGFALAIRLLTQAFPNLVEQWQFIFTALAILSMVLGNVVAIAQTSMKRMLAYSSIGQAGFVMIGLVIGTEAGYASMVFYLLIYLFMNLGAFTCVILFSLRTGTDEIGDYAGLYLKDPLLTLALSLCLLSLGGIPPLAGFFGKLYLFWAGWQAGAYGLVLLGLITSVVSIYYYIRVIKMMVVKEPQDMSEVIKNYPSIVWKPLGMRPLQVGLVLTLIATSLAGVLSNPLLTIVNSSVADVPRFKQATIPTSIDVAIQPDTPTIAPEL
>NC_009925.1|WP_012162552.1|2038698_2039748_-|ferredoxin--NADP(+)-reductase
MEKPFDRLKKDLRNFAKAGAKMVNIDVPEVEEKPIIAEPAPEAPVAPPQSAKKAKKKDDIPVNIYRPKTPFVGKCLSNEALVREGGEGRVQHLMFDLSEGDLRYIEGQSIGIIPAGTDANGKPHKLRLYSIASTRHGDRVDDKTISLCVRQLEYDHPETGERVYGVCSKHLCDMQPGDDVKITGPVGKEMLLPDDPEANIIMMGTGTGIAPFRAYLWRMFKEKHDDYKFKGLAWLFFGVAYTPNILYKEELEELQSQYPDNFRLTYAISREQKAADGSKMYIQSRIAEHADELWELVQKENTHTYICGLKGMEGGIDEGMSAAAAKHGVDWSEYQRTLKKAHRWHVETY
>NC_009925.1|WP_010474534.1|2040113_2041334_+|geranylgeranyl-reductase
MALRVAVVGSGPAGSSAAETLVKAGIETYLFERKLDNAKPCGGAIPLCMVDEFDLPLEIIDRQVRKMRMISPSNVEVDINIKNEGEYIGMCRREVLDGFMRDRAAKLGAKLINGTVNKLDFPTGANQPYTIHYADLTGGRAEGVMKTLQVDLVIGADGANSRIAKEIKAGDYNYAIAFQERIRLPDEYMAYYQDRAEMYVGDDVSTDFYAWVFPKYDHVAVGTGTMKVNQADIKKLQAGIRARAAHRLVGGEIIKVEAHPIPEHPRPRRVVGRVALVGDAAGTVTKSSGEGIYFAAKSARMCAEAIVEFSNNGQRIPTEDELKIYLKRWDKAYGMTYKVLDILQRVFYRSDATREAFVEMCADEDVQQMTFDSYLYKTVVPMNPLKQIKITAKTIGSLIRGNALAP
>NC_009925.1|WP_012162553.1|2041459_2041774_-|hypothetical-protein
MLRLTFVCTTLLMVVLSMGGEDARAQRRGQNRQSASSRTGDAKTLGVQEVGIRSWQPQPKQLPEPQEISIGLPPQVELTPGPDKPGEVPEQEDHRGIQVKVLNP
>NC_009925.1|WP_012162554.1|2042065_2042845_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MAVTIHQLRTWKEQGRPISVLTAWDFPFATLLDQAGVDVLLVGDSLAMVALGYPTTLPLTLDEMLYHAQAVTRGVNHALVICDLPFLSYQESPQQALRSAGTLLQQAGVAAVKLEGGYPDMAKTVHYLVDRGIPVMGHVGLTPQSVHQFSGYRRQGTSDVEADRILQEAIALEAAGAFAIVLEHIPAPLATKITQTLTIPTIGIGAGPGCDGQVLVTADMLGLSAWQPPFAKAYTNLQESITGAVQQFCDDVRHHQFPQ

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Crispr_ID: NC_009925_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009925_2

3218306-3218413

Orphan

Consensus_repeat	Method
GTATCGTTGCCAGACCCACCATCTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009925_2

>merge|NC_009925|2|3218306-3218413|CRISPRCasFinder
GTATCGTTGCCAGACCCACCATCTAAGAGGTCATCGCCACTACCGCCAAGCAGACTATCGTTGCCGTTACCAGAGCTTAGAGTATCGTTACCAGACCCACCATCTAAG

>NC_009925|2|2|3218306-3218413|CRISPRCasFinder
GTATCGTTGCCAGACCCACCATCTAAG	AGGTCATCGCCACTACCGCCAAGCAGACTATCGTTGCCGTTACCAGAGCTTAGA
GTATCGTTACCAGACCCACCATCTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009925.1\|WP_041660900.1\|3228142_3228670_-\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_010468695.1\|3203032_3203284_+\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_012163595.1\|3206527_3209470_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|369942
NC_009925.1\|WP_010468693.1\|3203302_3203599_-\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_012163606.1\|3229135_3230092_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_009925.1\|WP_012163598.1\|3210941_3213899_+\|peptidase-domain-containing-ABC-transporter	unknown	unknown	gnl\|CDD\|225183
NC_009925.1\|WP_012163602.1\|3222765_3223722_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|133398
NC_009925.1\|WP_148215923.1\|3224596_3226249_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NC_009925.1\|WP_012163599.1\|3213895_3215491_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_009925.1\|WP_012163597.1\|3210192_3210945_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223831
NC_009925.1\|WP_012163594.1\|3204870_3205734_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_009925.1\|WP_010480514.1\|3223879_3224191_-\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_010480524.1\|3230481_3230634_+\|high-light-inducible-protein	unknown	unknown	gnl\|CDD\|177653
NC_009925.1\|WP_076611737.1\|3216016_3216890_-\|IS630-like-element-ISAcma25-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_009925.1\|WP_012163604.1\|3226616_3228146_+\|DUF4189-domain-containing-protein	unknown	unknown	gnl\|CDD\|270916
NC_009925.1\|WP_012163608.1\|3233800_3235069_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340830
NC_009925.1\|WP_012163592.1\|3202520_3202946_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_009925.1\|WP_012163593.1\|3203973_3204861_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|215315
NC_009925.1\|WP_148215746.1\|3233261_3233615_-\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_012163607.1\|3230746_3233029_-\|family-16-glycosylhydrolase	unknown	unknown	gnl\|CDD\|185693

Protein	Function_ID	Function_description	E-value
NC_009925.1\|WP_012163595.1\|3206527_3209470_+\|calcium-binding-protein	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	0.00923572
NC_009925.1\|WP_010480524.1\|3230481_3230634_+\|high-light-inducible-protein	gnl\|CDD\|177653	PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.	1.26027e-06
NC_009925.1\|WP_012163606.1\|3229135_3230092_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	4.03717e-14
NC_009925.1\|WP_012163598.1\|3210941_3213899_+\|peptidase-domain-containing-ABC-transporter	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
NC_009925.1\|WP_012163602.1\|3222765_3223722_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|133398	cd04770, HTH_HMRTR, Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	4.71732e-34
NC_009925.1\|WP_148215923.1\|3224596_3226249_-\|FHA-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	1.44942e-65
NC_009925.1\|WP_012163599.1\|3213895_3215491_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.92768e-52
NC_009925.1\|WP_012163597.1\|3210192_3210945_+\|peptidylprolyl-isomerase	gnl\|CDD\|223831	COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones].	1.28342e-13
NC_009925.1\|WP_012163594.1\|3204870_3205734_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.47007e-11
NC_009925.1\|WP_076611737.1\|3216016_3216890_-\|IS630-like-element-ISAcma25-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.45907e-44
NC_009925.1\|WP_012163604.1\|3226616_3228146_+\|DUF4189-domain-containing-protein	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	5.87079e-71
NC_009925.1\|WP_012163608.1\|3233800_3235069_-\|glycosyltransferase	gnl\|CDD\|340830	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.	2.34099e-153
NC_009925.1\|WP_012163592.1\|3202520_3202946_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.64853e-07
NC_009925.1\|WP_012163593.1\|3203973_3204861_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|215315	PLN02578, PLN02578, hydrolase.	1.02512e-88
NC_009925.1\|WP_012163607.1\|3230746_3233029_-\|family-16-glycosylhydrolase	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	3.40293e-65

>NC_009925.1|WP_076611737.1|3216016_3216890_-|IS630-like-element-ISAcma25-family-transposase
MPKIYSYDLRCKVIDAIELDGMRPSEASELFDISRNTINQWQHLKAETGDLHPKPVHHPGHSHKITDWDKFRAFAHKHRHKTQAQMAQLWDGEISDRTISRALQKIGFTRKKTYGYRERDKHKRAAFIKRLSTVDPDDIVYADESGMDHRDEYDYAYGPKGERVYALKTGRRSGRVNMIAALRAKQLMAPFTIEGACNRTVFELWLERCLIPVLKPGQKLVIDNATFHKGGQIQELVEKAGCEVWYLPPYSPDLNKIERSWSWIKSRIRHQLEHFGSLREAMEHVLHLVS
>NC_009925.1|WP_012163599.1|3213895_3215491_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MTSTQDFAGDPTKLNGTNGNNGNGSEPTVLSLTKSEPKKEKPFDRPVILQQSPFWSRAIIYGIVGAAAAALAWACLFEIEEAIPATGQLEPKGAVKAVQSPVTGVVKEIKVEEGDLVKKGDVLIVLNRKATRSEINSLKRQRRNLVQVNEYYRQQLKGQTDTPLPDLIDPELINSTRDRQSLVAENKLFRAQLNGANNAQAFSAEERQRLNSGLLQGKTSVAAAQARVMQGDKQLRQIEVQLEQTKIQLASAQQTLALNKEIVADIEDAHKKGAIARVQFKRQEDEVQSGEAEVSRLQQEQIRLLRQMEQIGQEKLQSQAQALNTVATNQRDLLDRIAANQQRITEIDSQLTKAIVDNQRTIADLENRLQQAELTLDYQELKAPVAGVVFDLQPSSPGFVANASEPILKIVPEDNLKAKVYITNKDIGFIQTGMPVDVRVDSYNFSEFGDIKGTIESIGSDALPPTEVRQFYSFPAVVKLDTQTLKTRGRRELDLQSGMSVSVNIKVRDRPIISLITDRFSREEDGIKHLR
>NC_009925.1|WP_012163598.1|3210941_3213899_+|peptidase-domain-containing-ABC-transporter
MTSAILALESFLKDLPGFDQLSEAVLSSVAKEFQPLRYPMGRPLVSNRAMPQDFTLIYQGQVRLLGYDPRTDAPVTLSLLGPGAAVGWISLVRQIPCETAIASVETVGLKLPAATFLELLDHEPSIAQVYEQQPSVLEAFEVLGQQLLIRADGSTDLKRLAERALPDSLIQNRPIRDISIAQLQPNLEWFVSGGSIPDLEVGQPLETCLEQLNGTVSRSETLRLIGLSPIKAQQPKIEPVASAPQTDAWEEIPEAPTLLPTVDEAPVKHGKYPFKSGRGPVDAPLACFQMLALHLNLPFRKDVIRRILKNQTERNGPGISLPVYGAIAESMGLRAQLVETPASAFPRLPVPALINWQDRIALVYETGSKEIVFAVPEQTMLRKHPDDFLEAFDDKVQVLLLERTHDTPQSRFNLSWFWPSIKKHRKVLIEVLIASFFVQLFGLANPLITQVIIDKVLSQGALGTLNVLGLLLVGVAIFEALLTSFRTYLFVDTTNRIDMSLGAEVIDHLVRLPLRYFDKRPVGELATRVNELENIRKFLTGTALTVVLDAVFSVVYIVVMVFYSWLLTIIALGTVPLFALLTFIFAPIIRRLARTKAEENAKTQSYLVEVVSGIQTVKAQNIELKSRWQWQDRYARYVSSGFKAVVASTTAGSMSGFLNKLSSLLLLWVGAYLFIQGQLTVGELIAFRIIAGYTTGPLLRLVQLWQNFQETALSLERLSDILDYPQEVTEADRDLIPMPLMEGAVKFDELSFRFKDHGPMQLQQVSLEVPAKTFVGIVGQSGSGKSTLMKLLMRLYNANGGRILVDQYDISKVELYSLRRQIGMVLQDSLLFDGTVQENIALSSPDATAEEIVEAAKVAYAHDFIMELPQGYNSRVGERGSSLSGGQRQRIAIARMVLQNPQLIILDEATSALDYNAERQVCLNLAEAFGDRTVFFVTHRLKTLESADMILMMDQGNLVEQGTHAELMQQKGRYYWLYQQQEIQS
>NC_009925.1|WP_012163597.1|3210192_3210945_+|peptidylprolyl-isomerase
MISALPIVDKTVQPSDLIPLLGQYQLLPQLLKELIIDQVIQDVQLSSEEVVQAVEQFYRQYQIGEEARREAWLTHYRMTPQQLAAQAQRQMKLYKFKLQTWNNQVESDFLQQKGQFDQYVYSLIRVASAEVAQELYFRLQAGEQAFADLATKYSQGPEAQTGGLIGPVTAANLHPTLVQILTSAQPGQVRPPIRLGEWFVIVSLQKLISAQLDAPLRQQLLEQRFNEWLQLQLQSVVVSDDSIAVSAQTP
>NC_009925.1|WP_012163595.1|3206527_3209470_+|calcium-binding-protein
MPNFNSINDGDLENGNGPIVLDEFRESLRVRSGQNLQTGDQNSVVTEGVLNTVVVEENASIESNNTAVEANGLASIVLNQGTIAGGVNGVSATGNRFRLFNRGTIASDSRAVDISDGDGSIVVNSGSILGTDDQRNGTLYVDGTVDNFRLLNQRSGVIDAGEGNLGDAVSVQVGAANDPTSERINIVNNGLFQGRGDGPEVFANGTRVGANGSSGLRFFNGSGQPETAVSGSVINNGTITAEVNVGFLGGLVVEDGVGFNGQIINGRNGLINGPRNGLYIGNADHDLTIRNFGTIQSGSRAVNIDGTGVDLLNNGTIIGTGNQRNGTVYSDATAENYRIFNGPNGLIDSGVGNQGAGIALQTGEVAGDVVHSTLTNLGTIQGRGQAAANLGLAGDGLRIFSGVDGGGTVYRGSIFNRGDILSESTQGATAAVRFSNGLAYQGTLTNARGGLIDGAQNGLYFGDAEHDATVVNQGTIQSGSRAVNIDGSGVDLRNFGQILGTGDQRNGTVYSDATAEDYSIFNGRSGLIDAGEGNQGAGIALQTGEVAGDVVHATLVNQGTIQGRGQAAANVGLAGDGLRIFSGVDGGGTVYRGNIFNQGDILSESTQGATAAVRFANGLAYEGTLTNARGGLIDGAQNGLYFGDAEHDATVINRGTIQSGSRAVNIDGSGVDLRNFGQILGTGDQRNGTVYADSTAEEYSIFNGRSGLIDAGEGNNGAGVSLQTGDEDGDIVEASLGNDGIIRGRGDSTGNQAGDGVRLFTSVTGSTTFAGDLDNRGQILGTDDGIDIQTGVTLDGDINNTGLIRADQIGVNISGALNGDLNNQGTITGGAAAIDASAATAGVTVNNQGAINGDVILSNFDDIFNGAEGTVNGVIDGGGGNDRLIGSRQNENFVGGDGQDTFVFGANSGTDFVLDFSTSTVNGSDVLDFSAVFSDINEILGVGGAATQVGTSTLIDLGNNDSVFLVNVSVNDLTADNFIL
>NC_009925.1|WP_012163594.1|3204870_3205734_-|class-I-SAM-dependent-methyltransferase
MSTQLKIKASDDRTVEQITEHYHIEKQLADQLRHSNKSERLEGSLYTKLYDALFSKVNHHSHHSRPTDASANTLIQQRIDFLQHFMANDAIFLEIGPGNCHLCREIAPHVQQVYAVDVATEITKDLALPKNVDLIISDGCSIPTEPSSIDLAYSHQLMEHLHPEDAYDQLKNICTALKTGGTYVCVTPHRLSGPHDISKYFDEVATGFHLKEYSIVELAQLFKRAGFSKIRIYKVFKNRVLSLPVMFPISLVILALEKGVGLLPFPLRRTCAEKSLIFRTITIAGVK
>NC_009925.1|WP_012163593.1|3203973_3204861_+|alpha/beta-fold-hydrolase
MTAALEQTPTSQYWQWQGWRIHYVQQGEQGPCVVLLHGFGASTDHWRKNIEVLSRYYRVWAVDMLGFGRSEKPDMDYTGDLWRTQMQAFCEEVIQEPVFIAGNSLGGYASLCFAVDCPKWTRGVVLLNCAGSFTEVEPKPELPAWRQQLQDRRKTVMRSRPVINVMSYFLFNRMRKPDNIRKALSQVYKDQSAVTDRLVEEIYQPSLDKGARGVFAGVFKSPPGRKLDELLQSLDRPLFLLWGAADPWMTPQKAEKFQQFYPAADLVLVDAGHCPHDERPEVINAELHQWIQKQL
>NC_009925.1|WP_010468693.1|3203302_3203599_-|hypothetical-protein
MLSPDELIGQKVWVKVERDPDYPDLDPYRVQAELTQPTSPPWFFARYQDPPQRIREPGKWLTLYEAQQAVLTDPVIEYDDWDDEDDLDELSPDQFERL
>NC_009925.1|WP_010468695.1|3203032_3203284_+|hypothetical-protein
MFEKLINGINTVLMIDVFFVIFCFIWFLVGLLGRQLGIPLGFDVWYSLWPNVIQPAIGLVMAGSILTGVVGQIRKRMPSSQEW
>NC_009925.1|WP_012163592.1|3202520_3202946_+|tetratricopeptide-repeat-protein
MTDTTLDDVFKEALDRYQAGEPAEDLIPVFKDICDRARKSSPAWTCLAWLYLLAGKHNSAYKAAQKAVKLNPQDPQARVNLVVAMLETGQKGVRKHIEIVQQIAMAVPELRDELKESFDDGLKRKPDWASLERVQAWVFEG
>NC_009925.1|WP_012163602.1|3222765_3223722_-|pentapeptide-repeat-containing-protein
MTTGLLIGQLASKFGVSPQAIRYYEQLGLLKQPERNRSGYRLYTTAAQNRLQIIRSAQNFGLSLHEIKELLDLGEHSKDAQQRMQQMVAHHVEELDQQLAELNHSRQQLGRRFEQLQQLSTVGPQSQSLLKLLQTIEEHSHADLEGDEDISRSILAKYAAGERHFAGMKLIGAKLSGTLLSHSNFNRAELMLASLNETALEQCTFREAYLSGADMIGAYLKQADLSHAVLIGTDLSETTLTDASLIGSNLGGACLCEADLRGANLSEAILMGANLQGADLRGVNLFGSNLIDANLDDVIVDEPIVVDTSTVSYPQPVP
>NC_009925.1|WP_010480514.1|3223879_3224191_-|hypothetical-protein
MEFKGFHPKDANSDVIITLTESGIEYSNPSTRAFQFIAYTQVAGFSGWLPTYGSLHIYSSNPNLTIHLNFPQEVAEDYLRQIQDVLKEKVGPKTTNHLVAAVA
>NC_009925.1|WP_148215923.1|3224596_3226249_-|FHA-domain-containing-protein
MAPPNAPNPKSYTLVTGSNSIGRGLDNHIVLMHPSLSRHHAELMVQENGQAVLKDLDSLNHTYVNDQPIQQCHLKDGDRVRFGTIDMQITWNLTATIPDLSPPSPPPDQSLSIISRFAPENTRIELQDLLEPEAPGESGVGLKLKQQDDQTRSVDKLKILLEVSQQLSSPKELEELLDKILDLLFEIMTVDRGLILLVNPHTQELEQKAIKFRSGIPTGLRFYSTTITNFVYGSGEGILTDDAARDRRFHESRSIVQQAIHAAMCVPLKPRDEVIGVLYTDNLSVRAIYSEEDLEFLGGLANQAAIAIDNAHLYKKIQTEAVLRTKLERFFPQNVWRKLSEESQLEVIDTKVTVVFADISRFTELSSRLEPRQVITMLNEYFSVMVEGIVFRYEGTLEQYIGDALLAVWGAPYQHPNDAERAVKAAIAMQKAVSKLNQRWAKRWNFNIQIHIGVNTGVVAAGNIGSEQLFQYGTIGNTTNVSSRICDVARAGEILISQSTLNELHQCDVPLQQLTPVQVKGIQDPIQLYRLLWDQKNPPAQGQAVMAREP
>NC_009925.1|WP_012163604.1|3226616_3228146_+|DUF4189-domain-containing-protein
MTKLLNNRYQVLDVLGGGGFSTTFLVEDTHMPSRRRCVLKQLKPVSVDPSIQTLVQERFQREAAILETLGEVSDQIPRLYAYFTEAHQYYLVQELIEGRTLAEVIQTQGALSEATVLDILMRLLPIIDLIHQRGIIHRDIKPENIILRNQDGKPVLIDFGAVKETLGTVMNPQGQPTSSVVIGTPGFMATEQSRGFPTYASDLYSLGLTAIYLLTGKFPHELNIDPQTSQLRWHQSVLNVSPGFATVLDRSINLAARDRYGSAPDFLQALHDSTIKPVADAVQPPAAPAYAEPPPIMQPEGLPTNTAAPTPVPNFTPKKVGILSAIALASAVVSFVAVQQLWPVMAGLVAGRTDDPSPTELSPGVSPTDTPEASSSPTPEVSPSLTPEVSPSVTPEASPPPTTQFAAIAYSIPTGTYGYGLRYPSQAAAEQRALQECNQRVPAQDCQALFWFKNACGSLVRATSGAYGWAWSETIQEAEQEARKQCSSFGGTDCQILLNLCSDRVIQSS
>NC_009925.1|WP_041660900.1|3228142_3228670_-|hypothetical-protein
MNISVDAHIPFPRSLVFATYRDKLQELLPYMDNVHHIEPKSYQQEDQRVICTNEWHGGGDIPTIAKAFIDEQMLSWTEHNIWNEADFSLEWRITTHAFTEAVSCSGKNLFREQGDTTIVENRGELIIYPRKIDGIPDFLRSQVAGFVEELLSQKIGPNLTQMGVGVRRYLEKTTA
>NC_009925.1|WP_012163606.1|3229135_3230092_+|DMT-family-transporter
MTFKLSQAKQPWRLSAELFPFLAMLAAIVALSLAAIFIKLSERELGPFATIFNRFWVAYIVLWVWHEWESLRGSKEAVKEIEYTQRDQGLLVAAALMFWGCIALWAWSLTRTEVANSTLLHNLTPLFTTLGGWLLLQQRFDRRFVVGLVVAIIGAVALSVGDFQVSTSHLTGDLASLLSAVFSAANLMIIERLRAKFSVNTILQWCCFWGAIWTLPVVLLTEDRLFPVSASGWLSVICLAIVCQVLGQGLQAFSLKRLSSGLVGILLLLDPVLAALTAWVLFAESLTLLKWTAFFVVLLGVYLAKSSDAATHPVEEGA
>NC_009925.1|WP_010480524.1|3230481_3230634_+|high-light-inducible-protein
MSTQNQTFGFTSFAETLGGRLAMVGFSLAVITEVLTGQGIVGQIAALLSF
>NC_009925.1|WP_012163607.1|3230746_3233029_-|family-16-glycosylhydrolase
MRTIKSFFLSDGDDIWGGWEDLVDYIVYGRKGNDKLYGYNGNDTLFGEEGNDEIYGSLGDDSLDGGDGNDTLNGGAGNDTISGQGGNDLIFGDVSNDFLYGNDGDDLIFGFDGVDFLDGGAGKDSLYGENDNDTLYGRGGADLLDGGAGDDVLYGNGGKDVLYGYTGQDSLEGGNGHDTLDGGTGNDQLWGGKGNDSLNGGAQDDVLDGVRASNNSHSGVNTIDTLLGGEGADAFILGDSISAYYDDGNAATQGDNDYAVIQDLNRLQDSIQLHGSASDYVVSDIPTSLQSQFSGENAGIYLDTNNNGTWDSTDELVAVVENLKADSVVLSANYFDYTDNPNATDWHPANDSNWELVFQDEFNGTSLDESFWNTRYTHHNHYNGRTNLWNNEAQYYVGDNEVIDGVTYDGMDIENGTLKLLGQKLDQGITADIIDPLTGYADTQTFGYTSGMISSHNKQAFTHGYMEIRAQVPSGEALWPAFWMLPTDGGWPPEIDVMEVLGDQTDRIFTSLHYTDGQSNIASESGEQVFSNIDFSADFHTFGAQWDADKITWFVDGQALYEITHDIPDVPMYLISNLAIGGDWPGQPTANTPDQSSLNIDYVRVYQDASGILHGGLADDVLSKDLGDLAGEAGNDTLTGGTGDNHLDGGAGDDMLWGSEGLDTMMGGLGLDQFILGDASGLFYDDGDVNTSGATDYANILDFALSDDVIQLQGSAADYVLGLAQDGVSTEIWHEQATNELIGVVSQVTLNDFSQGFVFV
>NC_009925.1|WP_148215746.1|3233261_3233615_-|hypothetical-protein
MSYATLLKEHVSASLKTSSITHKSYQPCILVMPEYVTQSNQEYTEQLFQTICEAITSNKYIVLDFQNTRLIDSYGAKVIAELFQTAYNFTVGIGCIHLSTQLECCHSITGYSPFDSF
>NC_009925.1|WP_012163608.1|3233800_3235069_-|glycosyltransferase
MSPFTPISPHGPPTKVALISVHGDPAVEIGAEEAGGQNVYVRQVGEALAHLGWQVDMFTRKAHPQQAEQVQHCPGCRTIRLTAGPTEFVSRDEIFEYLPQFVRELLGFQQQESCQYPLVHTNYWLSSWVGMELKQHQPLVQMHTYHSLGAIKYANVPNIPAIATTRLAIEKQCLEAADCIVATSPQEEAHMRSHLSSRGNIQVIPCGTDIGRYGAMTRAEARQKLGIPLDAKVVFYIGRFDPRKGIETLVRAVAQSKFRTDDTLQLIIGGGSRPGEKDGWERDRIEGIVQDLDLADHTQFPGRISNDALPYYYAAADVSVVPSHYEPFGLVAIESMASRTPVIASDVGGLQFTVLPHETGLLIPAKDIPGFSRAIDQILADPSLREQWGLAARKRVETTFSWQGVAQQLSQLYQQHILQMTA

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Crispr_ID: NC_009925_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009925_3

4815174-4815426

Unclear

Consensus_repeat	Method
CTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGAC	PILER-CR
CTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGAC	CRISPRCasFinder
CTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGAC	CRT

3 spacers

c2c5_V-U5

The CRISPR arrays of NC_009925_3

>merge|NC_009925|3|4815174-4815426|PILER-CR,CRISPRCasFinder,CRT
CTTTCAACTCCCAACACCCTCAAAAGGACGTTGCGACGGAACTCAACGTCATGCTCTGCAATCATTTCAGTTCTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGACACTTTACCTGGAAGCGGCTTGAGGTCAGTCGCGAACTTTCAACCCCCAACACCCTCAAAAGAACGTTGCGACCTCAATTGGAAATTAGAGGAGCAAACGCAATGCATCTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGAC

>NC_009925|3|1|4815174-4815426|PILER-CR
CTTTCAACTCCCAACACCCTCAAAAGGACGTTGCGAC	GGAACTCAACGTCATGCTCTGCAATCATTTCAGTT
CTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGAC	ACTTTACCTGGAAGCGGCTTGAGGTCAGTCGCGAA
CTTTCAACCCCCAACACCCTCAAAAGAACGTTGCGAC	CTCAATTGGAAATTAGAGGAGCAAACGCAATGCAT
CTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGAC

>NC_009925|3|3|4815174-4815426|CRISPRCasFinder
CTTTCAACTCCCAACACCCTCAAAAGGACGTTGCGAC	GGAACTCAACGTCATGCTCTGCAATCATTTCAGTT
CTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGAC	ACTTTACCTGGAAGCGGCTTGAGGTCAGTCGCGAA
CTTTCAACCCCCAACACCCTCAAAAGAACGTTGCGAC	CTCAATTGGAAATTAGAGGAGCAAACGCAATGCAT
CTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGAC

>NC_009925|3|1|4815174-4815426|CRT
CTTTCAACTCCCAACACCCTCAAAAGGACGTTGCGAC	GGAACTCAACGTCATGCTCTGCAATCATTTCAGTT
CTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGAC	ACTTTACCTGGAAGCGGCTTGAGGTCAGTCGCGAA
CTTTCAACCCCCAACACCCTCAAAAGAACGTTGCGAC	CTCAATTGGAAATTAGAGGAGCAAACGCAATGCAT
CTTTCAACCCCCAACACCCTCAAAAGGACGTTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009925.1\|WP_041660098.1\|4815957_4816575_-\|hypothetical-protein	c2c5_V-U5	-	unknown
NC_009925.1\|WP_012165032.1\|4817378_4817714_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NC_009925.1\|WP_041660099.1\|4823402_4823660_+\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_012165033.1\|4817710_4817971_-\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_012165036.1\|4819574_4819976_-\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_012165021.1\|4807217_4807799_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239267
NC_009925.1\|WP_012165040.1\|4820803_4823227_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|223363
NC_009925.1\|WP_012165038.1\|4820071_4820410_-\|XisI-protein	unknown	unknown	gnl\|CDD\|341357
NC_009925.1\|WP_012165039.1\|4820397_4820811_-\|XisH-family-protein	unknown	unknown	gnl\|CDD\|370136
NC_009925.1\|WP_175307264.1\|4812134_4812287_-\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_041660097.1\|4808065_4809736_+\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223651
NC_009925.1\|WP_071819958.1\|4818693_4819635_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341171
NC_009925.1\|WP_012165026.1\|4812419_4812926_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|119400
NC_009925.1\|WP_012165023.1\|4809764_4810697_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|237771
NC_009925.1\|WP_012165018.1\|4804067_4805591_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|177094
NC_009925.1\|WP_012165034.1\|4818075_4818627_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_009925.1\|WP_012165020.1\|4806667_4807258_+\|hypothetical-protein	unknown	unknown	unknown
NC_009925.1\|WP_012165027.1\|4812925_4814503_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|379902
NC_009925.1\|WP_012165024.1\|4810963_4812121_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NC_009925.1\|WP_012165019.1\|4805853_4806408_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009925.1\|WP_012165032.1\|4817378_4817714_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	9.31361e-10
NC_009925.1\|WP_012165021.1\|4807217_4807799_-\|thioredoxin-family-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	3.06985e-84
NC_009925.1\|WP_012165040.1\|4820803_4823227_-\|N-6-DNA-methylase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	6.99135e-73
NC_009925.1\|WP_012165038.1\|4820071_4820410_-\|XisI-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	5.05294e-52
NC_009925.1\|WP_012165039.1\|4820397_4820811_-\|XisH-family-protein	gnl\|CDD\|370136	pfam08814, XisH, XisH protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	2.60757e-75
NC_009925.1\|WP_041660097.1\|4808065_4809736_+\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	0
NC_009925.1\|WP_071819958.1\|4818693_4819635_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341171	cd17282, RMtype1_S_Eco16444ORF1681_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Escherichia coli G4/9 S subunit (S.Eco16444ORF1681P) TRD1-CR1 and Zobellia galactanivorans DsiJT S subunit (S.ZgaJTORF2697P)TRD2-CR2. The recognition sequences of Escherichia coli G4/9 S subunit (S.Eco16444ORF1681P) and Zobellia galactanivorans DsiJT S subunit (S.ZgaJTORF2697P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It also includes TRD-CR-like sequence-recognition domains of various putative type II restriction enzymes and methyltransferases and may also include type I DNA methyltransferases.	1.35637e-92
NC_009925.1\|WP_012165026.1\|4812419_4812926_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|119400	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avirulence gene that can convert virulent strains of P. syringae to avirulence on Arabidopsis thaliana, soybean, and bean. The family also includes bacterial tellurite-resistance proteins (trgB); tellurium (Te) compounds are used in industrial processes and had been used as antimicrobial agents in the past. Some members have been described proteins involved in cation transport (chaC).	4.76737e-19
NC_009925.1\|WP_012165023.1\|4809764_4810697_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|237771	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional.	0
NC_009925.1\|WP_012165018.1\|4804067_4805591_-\|AAA-family-ATPase	gnl\|CDD\|177094	CHL00195, ycf46, Ycf46; Provisional.	0
NC_009925.1\|WP_012165034.1\|4818075_4818627_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.29981e-27
NC_009925.1\|WP_012165027.1\|4812925_4814503_-\|diguanylate-cyclase	gnl\|CDD\|379902	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase. HisKA_7TM is an N-terminal region consisting of seven transmembrane domains found in Archaea and some bacteria. It is always found associated with histidine kinase.	2.79671e-65
NC_009925.1\|WP_012165024.1\|4810963_4812121_+\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	3.00404e-175

>NC_009925.1|WP_012165027.1|4812925_4814503_-|diguanylate-cyclase
MLIHYLLALLPAIAAFATGSIAIYVWQRRSVTGAKSFFRCILCLFIWCFFAVLEYLSTEATPRIVFGKLQYLGIPFFAVFWLVFTLQYTHNDSRLNTQRTRGMMVLPLLSMIFAFTDPWHGLIWASVELGHTPAPQLMIDHGWWFSYVMMPYNYLLLLGGVGVLLNAYFASSQIYRQQILVLLSASIIPFFSSLLYLLARVHFYGLDLTPISFAVSGLIMVVGLFRGKLFEVSPISYRTVFLNTEDAVIFLDTQNHIVDLNPSAYRESLFDNILGQPFHVSFPAYQHLLTTPLTQEITETVKLFQFSQTLLKEVKIRTLHSPGHRLVGSLVIIRDVTVERQKQAQLKHFAYFDSLTGLCNRRQLEISGQLSLSSAGKGLWPVALLYVDLNDFKPINDTYGHQIGDAVLIYVAKCLKTCVRQGDIVARIGGDEFVALLFKVNQNAAHATRERLLLRLRQPLKLENITLKITASIGVASHPQDGCTLSELMHCADQSMYQDKQTYRDRRDHPRSLTDQTQGTMKSPK
>NC_009925.1|WP_012165026.1|4812419_4812926_-|gamma-glutamylcyclotransferase
MVTNHPDYYFAYGSNLYQSRLLARVPSARFITLGHLQGYQFQFHKVGLDQSGKANIQATGQPDDIVWGAVFQMDLSELHYLDQAESLGVGYERQCLSILTTEGCLEAFTYLALLIDQTLRPFHWYKAYIVQGALNLSLPAAYIQDIQAIPSIPDPDAERRQHHRALLG
>NC_009925.1|WP_175307264.1|4812134_4812287_-|hypothetical-protein
MDSFTSRLCSKTSLAIGLYISAMVSLGFLAHAQLNAMQLMQSERPVSVSP
>NC_009925.1|WP_012165024.1|4810963_4812121_+|cysteine-desulfurase
MQIYLDYSATTPCHPDVIIAMGKVWTEQWGNPSSLHEWGQRSATVLEQARMQIADLIHAPAESIIFTSGGTEANNLALMGIARTFTQPQHLIISSIEHSAITEPARLLEQQGWQVTRLPVDSQGHISPDALNDSIQNNTVLVSVIYGQSEIGTLQSIHTLGQIARDRGVLFHSDAVQVAGRLPIDVQTLPVDLLSLSSHKLYGPQGAGALYVRPGTHLIPLLAGGGQEQGMRSGTPAVPIIAGFGLAAEMAAEEMEAEGVRLMQLRDRMFAQLSHSPYLLPTGDLSQRLPHHVSFCLPPTTEITGKTLVRQMNLAGIAISAGSACHSGKLSPSPILKAMGYSDQQALSGIRLTLGKQTTLEDIDWTITALNQLLHRLMPQSAAIV
>NC_009925.1|WP_012165023.1|4809764_4810697_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MSTTAITILGTGVWGSALGTLAQANHHTVTAWSRRGPLTLTQSLAQAQVLVVAISMKGIPDLAAQLQQLKLPTSTIIVSATKGLDPATLRTPSQIWQATFPNNPVLVLSGPNLSKEIEQRLPAATVVAGPNQAAVETVQQLFSSDCFRVYTNPDQLGTELGGTLKNVIAISVGVCEGLKLGTNARAALITRALPEMIRVGTHLGGQAETFFGLSGLGDLLATCTSPLSRNYQVGYQLAQGKSLPEILDQLHGTAEGVNTTNVLVDLANREGIPIPIARQVHRLLKGRITPQEALESLMDRELKPEACDLL
>NC_009925.1|WP_041660097.1|4808065_4809736_+|glycerol-3-phosphate-dehydrogenase
MRNWQTIENTAFDLIVIGGGSNGAGVARDAALRGLKTLLIDKDDFGSGTTGWSSRLIHGGLRYLEYFEFNLVRESLREREVLLRVAPHLVRPLQMSIPVYASGSRAFWEIQAGMLLYDVLSFDKSLPNHRILPLQKCLQLFRHLNPKGLKGAAQYFDAQVVHAERLCLELVLSAQTAGATTLNYAQVSQLQVEGDRVTGITLDDLIAETTHTVQLSPQTVVINTAGPWVDQVLQGIQSPTPKQERKIGGTKGSHIIVDPFPGAPDAALYAEAEVDNRPFFILPWANQYLIGTTDIRYSGDLDRVKADDAEIDYLLNETNRVIPCAQLSRADIRFTYAGVRPLPYSEGKKTSSITRSHVLYDHCKDGITNLISLIGGKLTTYRQVAEEMVDAVLKKQGRGPIPCVTKQELFPGAISLNDTLIETMISKYQSLVSRETVFHLFSIYGSFAVKILALIDETPELAEPITPSLLDIKAQVVYAVQSEHAHTLVDICVRRTILAMQTNYGFDVLPAVTAILKQYCNWSDADCDHHIQHYHRFMEANSLPDFVTAQTTAPIR
>NC_009925.1|WP_012165021.1|4807217_4807799_-|thioredoxin-family-protein
MVLTASTMLDLGTPAPNFQLPDVVSGQTISLETFAHRNVLLVMFICQHCPFVKHVQAELAQIGHDYSDQSLGIVAISSNDIQSHPLDDPEHLTAMATSLGYNFPICFDEHQDVAKQYTAACTPDFFVFDAHRKLVYRGQLDDSRPSNNLMVTGEDLRGALDAALAEQPISANQKPSIGCNIKWKPGNEPAYYG
>NC_009925.1|WP_012165020.1|4806667_4807258_+|hypothetical-protein
MKVIQVQDLQAQDIQGISEHQLLFHGQLFQLGPKISKKLEKAVLEYCQISCRSGQACLLQDDGSHWVVWKRVKKSPEPSRALPSNSAPNVFQPRTLSPQFISRCKQELANCIGPIADLVFEQTLSSLNTDILKPQEFVAALSQNIPSSALASRFHDHCQPASEAEMVASRVRFMKHSTQAGDYLSRNKRVHSPVSI
>NC_009925.1|WP_012165019.1|4805853_4806408_+|hypothetical-protein
MSIIQSTDLEARGLLNDQSSALQIKGKWFRPGPAFTKSLLQTALEFCEDARNQGRQYLLIEFPTYFMAWQRIRPKKSTSPSQKPPASPQAISSQTSPPPKPTAQPSPPTEPPDLSTKATLASVNRIFINRCKTELAIHVGPMADFLTEQILKQSPQLSPQQLIDALAQQIPDPQAALAFRKTLE
>NC_009925.1|WP_012165018.1|4804067_4805591_-|AAA-family-ATPase
MSFSHEFELLLRARYPLIYIPTQEEERVESVIADSAQRQGNRAVYTWDFVDGYQGNPTDAGFGQRNPLQALELIEQLPTSAPAIFILRDFNRFLEDVAISRKLRNLSRLLKSQPKNIVLLASEVAIPSDLGEVVHVIDFPLPDLGDIRSEVERLLAATTQPLTGKDLDDLARSCQGLTMDRIRRVLSRAIATHGQLSADDVELILEEKRQTIRQTQILDFYPARENISDIGGLDNLKDWLLRRGGAFSEKARQYGLPHPRGLLLVGIQGTGKSLTAKAIAHHWHLPLLRLDVGRLFAGLVGESESRTRQMIQLSEALAPCILWIDEIDKAFAGIDGRGDSGTTSRVFGTFITWLAEKTSPVFVVATANNIQSLPPEMLRKGRFDEIFFVGLPTKEEREAIFSVHLSRLRPHNLNQYDLQRLAYETPDFSGAELEQSIIEAMHLGFSQNRDFTTDDILEAASQIIPLARTAQEQVEFLQDWAASGKARLASKHSTLSLRIQRQLQQPD
>NC_009925.1|WP_041660098.1|4815957_4816575_-|hypothetical-protein
MGVSLYCGLPLQASIVNNQTRKLVATITAPQLLKLEGYQDKLKPFKRSQFAYLIGRVHRQRVYWRKIKKKEFSKGRLRRSKRLENLGKKCDQLIAYHLIQWAQTHQVGDIVLPSPHGIQDHIEARVQSLAQLKFPNNKQLQKRYAKAIRLRYPRWSYTRLIQCIADCAERREMKVNILKFYKNAGPFEQSVEIAYAHLQYEAPSS
>NC_009925.1|WP_012165032.1|4817378_4817714_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MISVRFTPRFKRRLKSLKKRYRQIQSDLQPVIQQLEQGNFIGDQIPGTTATVFKVRAKNSDIPTGKSGGYRIIYQVISPEDVLLLLVYAKSDQADVRINEIQTAVTEALEE
>NC_009925.1|WP_012165033.1|4817710_4817971_-|hypothetical-protein
MVNSSLEGQVRYVTNAAGEPTDVLVPLALWQQVISTLKDPASGLAWVDEHESNAQLLADLKISLQEAAARQTFPASQLWDDLADEP
>NC_009925.1|WP_012165034.1|4818075_4818627_-|Uma2-family-endonuclease
MTVTTYKWTIDRYHQAIQAGVFDDQPVELLRGEIIIMPPEGEPHAYYNSEVGDYLRNLLGSRAKVREAHPIILSDDSEPIPDLAIVKPLGTVYLDHHPYPSDIHWLIEFSDATLTQDLTTKKNTYAASGIQEYWVVNLKDKQLHIFKSLQNGHYDTENILKTGTVSPMAFQDITIQISYLMHP
>NC_009925.1|WP_071819958.1|4818693_4819635_-|restriction-endonuclease-subunit-S
MSFPFEADRSKIYLHAYDLLKVYYGMGSGLRQNLDYTDFKYLPLTIPPIDEQRRIVEFLDRKTVELDDAIATKQRLIELLQEQKAILINQAVTKGLDPNVPMCDRGIHGLEKVPNHWKLCSVKRLTQILRGKFSHRPRNDARFYGGQYPFIQTGDISQAGRRITKYSQTLNARGYAVSKEFPAGTVVMVITGAKTGEVSILGFNACFPDSAVGFFPNPGEVSADFLYYMFGVLKTRLDEVSIVSTQENLNVDRIGALYTACPPVEEQNQIVDFLDNRLLGFETAQVRAEEQINKLQEFREILISHAVTGKIKV
>NC_009925.1|WP_012165036.1|4819574_4819976_-|hypothetical-protein
MLTFPKHETYQDSQVSWLNEVPNHWRVELGRNYLRPKNVKNIGNHVKTVLSLSYGKIVIKPKEKLHGLVPESFETYQIVEPGDIIVRATDLQNDRTSLRIGLVQDHGIITSAYLCLSPSKQIDPRFTYMHMIC
>NC_009925.1|WP_012165038.1|4820071_4820410_-|XisI-protein
MAELKDYRCLVEDLLRELHGYDHSSHSDVESQLVFDAEHNHYLLIDVGWEQKQFVYGTIVHIDIKDNKVWIQRNNTEINLAERLVEQGIPKQNIVLGLHSPFMRKASGYAVG
>NC_009925.1|WP_012165039.1|4820397_4820811_-|XisH-family-protein
MAKDIFHDAVKRGLESAGWTVTDDPLSLKFGDTRIYIDLGAERILAAERGEEKIAVEVKTFASDSVVFDFHLAIGQFINYQVALENKEPNRLLYLAVPEEIYSTFFQSLLAKSVVQKYQIRLIVYEPETEVILEWLS
>NC_009925.1|WP_012165040.1|4820803_4823227_-|N-6-DNA-methylase
MDAASQNKLISFIWSIADDCLRDVYVRGKYRDVILPMFVLRRLDCLLEETKDAVMEEVRFQRESVGLTELESGALKDASGYVFYNTSDWTLKRLVETASNNRQILEANFKAYLDGFSENVKEIIDSFYLRDQIKRMVQADVLLDVLEKFTSPYINFSPTQGEDPDGRKLAGLSNLGMGYVFEELIRKFNEENNEEAGEHFTPREVIKLMTHLLFMPVKEQLPPVMLIYDGACGSGGMLTESQNFISDPEGGIKSDAQVYLYGKEVNPETYGICKSDMMIKGNSPENIKLGSTLAMDEFAGMRFDFMLENPPYGKSYAADQKHILDGKDVLDERFLLPLKDFWDEESLEKATPRSSDGQLLFLMDMVSKMKPLDQSPAGSRIASVHNGSSLFTGDAGSGESNIRRYIIENDWLEAIVQLPQNMFYNTGISTYVWVLSNNKAPERQGKVQLIDRSELYRKLRKNLGAKNCEFAPEQIEKITHLYLDRVHQPTLPPSEDRELPPPPISKVFDNQDFGFYKVTVERPLRLLAQFTPERVATLRYVPVLAEVMEWAYGEWGDEIYTSLTDHKQKIEEYLEKEEISLTAKNRKALFTAKTWENQRDLMQVAEQLMASVEQEVWHDFNDFAERVNDTLKTLARQLDSKLSASEKRQIFNAVSWRDEAAARVIKKVHKLKGEKLAELLEHLGTTEEHLADFGYWPGETAGQWIEYETDSELRDTESVPLNYGQALERGTAQIHGYFLAEVRPHVEDAWIALDSTKIGYEINFNKYFYQHKPLRKLETVVEEILELEKKTEGLLKRLVSFGATTDG
>NC_009925.1|WP_041660099.1|4823402_4823660_+|hypothetical-protein
MPQDLVQYINSPFASWMDRNILDRPDSAPSTETGEMAYALVQLDQKHKQQFLESLLLQDTDVYIIDNRGVFDTTQSAIQARLPLH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19515 : 89213

Bacillus_phage(11.11%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012160730.1\|19515_20316_+\|transposase	IS5-like element ISAcma5 family transposase	NA	NA	NA	NA
WP_012160731.1\|20342_21668_-	PhoH family protein	A0A141HS37	Bacillus_phage	1.8e-76	37.6
WP_012160732.1\|21928_22390_-	hypothetical protein	NA	NA	NA	NA
WP_012160733.1\|22536_25671_-	caspase family protein	NA	NA	NA	NA
WP_012160734.1\|25696_27079_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_041660678.1\|27420_28368_-	RsmB/NOP family class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_049783663.1\|28442_29159_+	hypothetical protein	NA	NA	NA	NA
WP_012160737.1\|29422_30424_+	adenosine kinase	NA	NA	NA	NA
WP_012160738.1\|30397_30874_-	MAPEG family protein	NA	NA	NA	NA
WP_083776672.1\|30964_31660_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_012160740.1\|31871_33323_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_148215637.1\|33358_34825_-	Rieske 2Fe-2S domain-containing protein	A0A076FFT9	Aureococcus_anophage	1.1e-34	28.3
WP_012160743.1\|35373_35880_-	YqeG family HAD IIIA-type phosphatase	NA	NA	NA	NA
WP_012160744.1\|35903_37004_-	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_012160745.1\|37032_37587_-	DUF3727 domain-containing protein	NA	NA	NA	NA
WP_010477919.1\|37711_38146_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_012160746.1\|38151_39366_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012160747.1\|39602_40769_-	hypothetical protein	NA	NA	NA	NA
WP_012160749.1\|41418_43209_-	carbohydrate porin	Q5GQG9	Synechococcus_phage	1.5e-12	46.2
WP_012160752.1\|44142_44808_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_012160753.1\|44797_45481_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_012160754.1\|45529_45799_+	hypothetical protein	NA	NA	NA	NA
WP_148215852.1\|45913_46366_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_012160756.1\|46448_46976_+	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_012160757.1\|47265_49698_+	GAF domain-containing protein	NA	NA	NA	NA
WP_012160758.1\|49790_50555_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012160759.1\|50686_50986_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_012160760.1\|51178_51940_-	hypothetical protein	NA	NA	NA	NA
WP_041658422.1\|52359_52668_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_012160762.1\|52906_53416_+	hypothetical protein	NA	NA	NA	NA
WP_012160763.1\|53428_54646_-	DUF790 family protein	NA	NA	NA	NA
WP_012160764.1\|54649_55873_-	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_012160765.1\|55936_56479_-	SRPBCC family protein	NA	NA	NA	NA
WP_012160767.1\|56868_57216_+	hypothetical protein	NA	NA	NA	NA
WP_012160769.1\|57741_58671_+\|transposase	IS5-like element ISAcma6 family transposase	Q1MVF0	Enterobacteria_phage	1.6e-63	42.0
WP_148215638.1\|59102_60258_+\|transposase	IS3-like element ISAcma13 family transposase	H6WZH1	Escherichia_phage	3.4e-26	31.9
WP_049783664.1\|60626_60977_-	hypothetical protein	NA	NA	NA	NA
WP_012160773.1\|61040_62291_-\|transposase	IS256-like element ISAcma7 family transposase	A0A218MNI5	uncultured_virus	3.3e-51	49.5
WP_012160774.1\|62477_62795_-	cupin domain-containing protein	NA	NA	NA	NA
WP_012160775.1\|62814_63222_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_012160776.1\|63307_65101_-	translational GTPase TypA	A0A2K5B2A5	Erysipelothrix_phage	6.7e-21	41.2
WP_012160777.1\|65313_70041_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	1.5e-43	31.2
WP_012160778.1\|70389_71421_+	diguanylate cyclase	Q6XM27	Feldmannia_irregularis_virus	9.2e-07	27.5
WP_012160779.1\|71534_71972_+	YjbQ family protein	NA	NA	NA	NA
WP_012160780.1\|71989_73042_-	Fe(3+) ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012160781.1\|73481_73811_+	hypothetical protein	NA	NA	NA	NA
WP_012160782.1\|73898_75623_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_012160783.1\|75662_80873_-	translocation/assembly module TamB domain-containing protein	NA	NA	NA	NA
WP_012160784.1\|81322_83506_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_148215853.1\|83758_84205_+	hypothetical protein	NA	NA	NA	NA
WP_012160788.1\|84448_85570_+	magnesium/cobalt transporter CorA	NA	NA	NA	NA
WP_012160789.1\|85673_86513_+	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_012160730.1\|86653_87454_+\|transposase	IS5-like element ISAcma5 family transposase	NA	NA	NA	NA
WP_012160790.1\|87744_88260_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012160791.1\|88340_89213_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA

DBSCAN-SWA_2

99021 : 160084

uncultured_virus(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012160803.1\|99021_100266_-\|transposase	ISL3-like element ISAcma10 family transposase	A0A2D1GQC1	Lysinibacillus_phage	5.8e-24	26.1
WP_012160807.1\|101484_102453_-\|transposase	IS4-like element ISAcma11 family transposase	A0A218MNH3	uncultured_virus	1.6e-37	32.5
WP_012160808.1\|102579_102744_+	hypothetical protein	NA	NA	NA	NA
WP_012160809.1\|103271_103853_-	hypothetical protein	NA	NA	NA	NA
WP_012160773.1\|104365_105616_+\|transposase	IS256-like element ISAcma7 family transposase	A0A218MNI5	uncultured_virus	3.3e-51	49.5
WP_083776673.1\|105609_105717_-	hypothetical protein	NA	NA	NA	NA
WP_041660686.1\|106156_108868_+	leucine-rich repeat protein	NA	NA	NA	NA
WP_012160812.1\|109162_109753_+	DUF4329 domain-containing protein	NA	NA	NA	NA
WP_012160813.1\|110041_115273_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_012160814.1\|115300_116395_+	TIGR03032 family protein	NA	NA	NA	NA
WP_012160815.1\|116436_116952_-	DUF4330 domain-containing protein	NA	NA	NA	NA
WP_012160816.1\|117346_117559_+	DUF2555 domain-containing protein	NA	NA	NA	NA
WP_012160817.1\|117592_118798_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	A0A1V0S7W6	Shearwaterpox_virus	1.3e-20	37.0
WP_012160818.1\|119141_119639_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_012160819.1\|119780_119972_+	hypothetical protein	NA	NA	NA	NA
WP_012160820.1\|120125_120743_+	glutaredoxin	NA	NA	NA	NA
WP_012160821.1\|120877_121663_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_012160822.1\|121693_122344_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_012160823.1\|122478_122940_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_012160824.1\|122948_123353_+	hypothetical protein	NA	NA	NA	NA
WP_012160825.1\|123316_124237_+	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_012160826.1\|124423_124681_+	hypothetical protein	NA	NA	NA	NA
WP_012160828.1\|124958_125465_+	DUF2947 family protein	NA	NA	NA	NA
WP_148215854.1\|125587_126058_+	hypothetical protein	NA	NA	NA	NA
WP_012160830.1\|126077_126566_+	SRPBCC family protein	NA	NA	NA	NA
WP_076611922.1\|126562_127652_-\|transposase	ISAs1-like element ISAcma12 family transposase	NA	NA	NA	NA
WP_148215639.1\|127819_128071_-	hypothetical protein	NA	NA	NA	NA
WP_010469004.1\|128149_128425_-	hypothetical protein	NA	NA	NA	NA
WP_012160833.1\|128562_129672_-\|transposase	IS630-like element ISAcma14 family transposase	NA	NA	NA	NA
WP_012160835.1\|130076_131801_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.3e-57	35.1
WP_010469000.1\|131993_132356_+	photosynthetic/respiratory NAD(P)H-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_012160836.1\|132431_132980_+	NAD(P)H-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_012160837.1\|133060_134164_-	inositol-3-phosphate synthase	A0A0H4IPK5	Stenotrophomonas_phage	4.2e-82	45.3
WP_139025596.1\|134594_134834_-	hypothetical protein	NA	NA	NA	NA
WP_010468995.1\|135036_135534_-	SMC-Scp complex subunit ScpB	NA	NA	NA	NA
WP_012160839.1\|135627_136488_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-23	30.9
WP_010468990.1\|136590_136791_+	hypothetical protein	NA	NA	NA	NA
WP_012160841.1\|137259_138318_+	glucokinase	NA	NA	NA	NA
WP_012160842.1\|138413_139961_+	mercuric reductase	NA	NA	NA	NA
WP_012160843.1\|140062_141742_+	alpha-glucosidase	NA	NA	NA	NA
WP_041658452.1\|142329_143259_+	hypothetical protein	NA	NA	NA	NA
WP_012160845.1\|143438_144713_-	DUF4336 domain-containing protein	NA	NA	NA	NA
WP_187152915.1\|144876_145053_-	hypothetical protein	NA	NA	NA	NA
WP_010474607.1\|145467_145818_+	hypothetical protein	NA	NA	NA	NA
WP_012160847.1\|145814_146804_-	phosphotransferase	NA	NA	NA	NA
WP_041658456.1\|147192_147852_+	hypothetical protein	NA	NA	NA	NA
WP_012160849.1\|148028_149255_+	(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_012160850.1\|149263_150814_-	hypothetical protein	NA	NA	NA	NA
WP_012160851.1\|151249_151999_+	D-alanyl-D-alanine carboxypeptidase family protein	NA	NA	NA	NA
WP_012160852.1\|152004_152670_+	hypothetical protein	NA	NA	NA	NA
WP_012160853.1\|152669_153842_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_012160855.1\|154417_155077_-	potassium channel family protein	NA	NA	NA	NA
WP_012160856.1\|155159_155321_-	hypothetical protein	NA	NA	NA	NA
WP_041658459.1\|155443_156052_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_012160858.1\|156117_156816_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_012160859.1\|157184_158675_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_012160833.1\|158974_160084_+\|transposase	IS630-like element ISAcma14 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

219733 : 271963

Bacillus_phage(50.0%)

integrase,tail,transposase

attL 222777:222791|attR 248173:248187

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012160919.1\|219733_221044_-\|transposase	IS701-like element ISAcma8 family transposase	NA	NA	NA	NA
WP_012160920.1\|221174_223541_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	3.0e-21	29.6
222777:222791	attL	NA	NA	NA	NA
WP_049783671.1\|223928_224303_-	hypothetical protein	NA	NA	NA	NA
WP_049783809.1\|224676_225030_-	hypothetical protein	NA	NA	NA	NA
WP_012160923.1\|225835_226582_+	FHA domain-containing protein	NA	NA	NA	NA
WP_012160925.1\|227132_227450_-	hypothetical protein	NA	NA	NA	NA
WP_148215643.1\|227642_227963_+	hypothetical protein	NA	NA	NA	NA
WP_041658575.1\|228004_228721_-	hypothetical protein	NA	NA	NA	NA
WP_041658577.1\|228913_229369_+	hypothetical protein	NA	NA	NA	NA
WP_012160928.1\|229497_230028_+	hypothetical protein	NA	NA	NA	NA
WP_012160929.1\|230132_231101_-	hypothetical protein	NA	NA	NA	NA
WP_041658582.1\|231169_231427_-	hypothetical protein	NA	NA	NA	NA
WP_041658584.1\|231762_232158_-	hypothetical protein	NA	NA	NA	NA
WP_012160933.1\|232199_232883_-	hypothetical protein	NA	NA	NA	NA
WP_012160934.1\|232901_233924_-	hypothetical protein	NA	NA	NA	NA
WP_041658586.1\|234119_239705_-	AAA family ATPase	NA	NA	NA	NA
WP_148215644.1\|239729_239957_-	hypothetical protein	NA	NA	NA	NA
WP_041658587.1\|240140_240446_-	hypothetical protein	NA	NA	NA	NA
WP_012160940.1\|240966_241812_-	hypothetical protein	NA	NA	NA	NA
WP_012160941.1\|241891_243091_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	9.4e-96	47.2
WP_012160943.1\|243291_244011_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012160944.1\|244144_244789_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012160945.1\|244826_245969_-	XdhC family protein	NA	NA	NA	NA
WP_012160946.1\|246551_247544_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_012160947.1\|247651_248512_-	hypothetical protein	NA	NA	NA	NA
248173:248187	attR	NA	NA	NA	NA
WP_012160949.1\|249163_249964_+\|transposase	IS5-like element ISAcma9 family transposase	NA	NA	NA	NA
WP_012160950.1\|250365_251289_+	DMT family transporter	NA	NA	NA	NA
WP_012160951.1\|251319_251811_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_148215645.1\|251807_252749_+	ATP-sensitive inward rectifier potassium channel 10	NA	NA	NA	NA
WP_012160953.1\|252892_255286_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_083776753.1\|255289_257167_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_012160955.1\|257479_259111_-	hypothetical protein	NA	NA	NA	NA
WP_148215646.1\|259172_260017_-\|transposase	IS1-like element ISAcma3 family transposase	NA	NA	NA	NA
WP_148215856.1\|260349_262191_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_012160959.1\|262602_264597_-	ATP-binding protein	A0A109WUE1	Acidianus_tailed_spindle_virus	1.1e-08	36.0
WP_012160960.1\|264603_264834_-	hypothetical protein	NA	NA	NA	NA
WP_012160961.1\|264846_265095_-	hypothetical protein	NA	NA	NA	NA
WP_012160962.1\|265104_266415_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_012160963.1\|266425_267103_-	response regulator transcription factor	NA	NA	NA	NA
WP_012160964.1\|267123_268284_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012160966.1\|269053_269602_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_012160967.1\|269642_271343_+\|tail	phage tail sheath family protein	A0A127AW39	Bacillus_phage	9.1e-20	29.4
WP_012160968.1\|271462_271963_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_4

374622 : 384124

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012161069.1\|374622_377325_-	ATP-dependent chaperone ClpB	A0A1C3S747	Escherichia_phage	4.9e-116	31.8
WP_012161070.1\|377483_378047_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.8e-50	53.1
WP_012161071.1\|378043_378925_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.1e-96	58.3
WP_012161072.1\|379014_380082_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.4e-87	47.9
WP_012161073.1\|380124_380742_-	adenylyl-sulfate kinase	A0A1B0XTK9	Freshwater_phage	1.2e-09	41.4
WP_148215650.1\|380756_382985_-	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_049783813.1\|383206_384124_-	site-specific DNA-methyltransferase	M1Q227	Streptococcus_phage	4.6e-18	27.6

DBSCAN-SWA_5

625266 : 690736

Planktothrix_phage(20.0%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012161282.1\|625266_626484_-\|transposase	IS4-like element ISAcma18 family transposase	NA	NA	NA	NA
WP_012161283.1\|626480_626678_-	hypothetical protein	NA	NA	NA	NA
WP_012161284.1\|626793_627024_-	hypothetical protein	NA	NA	NA	NA
WP_012161285.1\|627046_628126_-	hypothetical protein	NA	NA	NA	NA
WP_012161286.1\|628242_629535_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_012161287.1\|629746_630034_+	DUF2470 domain-containing protein	NA	NA	NA	NA
WP_012161288.1\|630055_631414_-	hypothetical protein	NA	NA	NA	NA
WP_041658851.1\|631525_633139_+	hypothetical protein	NA	NA	NA	NA
WP_012161290.1\|633331_634786_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012161291.1\|634788_636006_+	ABC transporter permease	NA	NA	NA	NA
WP_187152939.1\|636078_636780_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.2e-31	35.0
WP_012161293.1\|636855_637677_+	endonuclease VIII	A0A1V0CNR6	Kaumoebavirus	7.8e-09	25.9
WP_012161294.1\|638043_638604_+	hypothetical protein	NA	NA	NA	NA
WP_012161295.1\|639058_640093_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_012161296.1\|640095_641094_+	beta-ketoacyl-ACP synthase 3	NA	NA	NA	NA
WP_012161297.1\|641094_641970_+	DMT family transporter	NA	NA	NA	NA
WP_010469221.1\|641996_642323_-	carbon dioxide-concentrating mechanism protein CcmK	NA	NA	NA	NA
WP_010469218.1\|642379_642691_-	carbon dioxide-concentrating mechanism protein CcmK	NA	NA	NA	NA
WP_012161299.1\|643236_644196_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-25	37.6
WP_012161300.1\|644240_645080_-	SWIM zinc finger family protein	NA	NA	NA	NA
WP_012161301.1\|645072_645636_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_012161302.1\|645740_647207_-	carotenoid oxygenase family protein	NA	NA	NA	NA
WP_041658858.1\|647793_648546_+	trypsin-like peptidase domain-containing protein	S5FV10	Shigella_phage	3.3e-06	25.1
WP_012161305.1\|648689_651872_-	DEAD/DEAH box helicase	A0A0P0YMN2	Yellowstone_lake_phycodnavirus	2.3e-40	30.0
WP_041660738.1\|652128_652407_+	hypothetical protein	NA	NA	NA	NA
WP_012161307.1\|652403_653033_+	ABC transporter permease	NA	NA	NA	NA
WP_012161308.1\|653200_654508_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012161309.1\|654531_656202_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012161311.1\|656619_657117_+	hypothetical protein	NA	NA	NA	NA
WP_012161312.1\|657142_657919_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_012161314.1\|658201_661609_-	DEAD/DEAH box helicase family protein	A0A097BY72	Enterococcus_phage	2.6e-18	23.5
WP_010469183.1\|661707_662181_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_187152966.1\|662180_662345_+	hypothetical protein	NA	NA	NA	NA
WP_012161155.1\|662535_663837_+\|transposase	transposase	NA	NA	NA	NA
WP_010469180.1\|664000_664228_-	prevent-host-death protein	NA	NA	NA	NA
WP_012160919.1\|666644_667955_+\|transposase	IS701-like element ISAcma8 family transposase	NA	NA	NA	NA
WP_012161320.1\|669510_669669_+	hypothetical protein	NA	NA	NA	NA
WP_012161321.1\|669740_670112_+	PIN domain-containing protein	NA	NA	NA	NA
WP_012161322.1\|670303_670516_+	hypothetical protein	NA	NA	NA	NA
WP_012161323.1\|670516_670921_+	PIN domain-containing protein	NA	NA	NA	NA
WP_012161324.1\|671289_671754_-	protein tyrosine phosphatase family protein	NA	NA	NA	NA
WP_012161325.1\|671988_672132_+	hypothetical protein	NA	NA	NA	NA
WP_041658867.1\|672193_672853_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012161327.1\|672901_674434_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_071819931.1\|674362_674824_-	hypothetical protein	NA	NA	NA	NA
WP_012161328.1\|674828_675788_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	9.0e-41	41.1
WP_012161329.1\|675784_677212_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_010469156.1\|677246_678230_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_012161330.1\|678335_679733_-	deoxyribodipyrimidine photo-lyase	A0A097P963	Sucra_jujuba_nucleopolyhedrovirus	7.4e-84	38.7
WP_012161331.1\|680052_680820_+	AhpC/TSA family protein	NA	NA	NA	NA
WP_012161332.1\|680816_681620_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012161333.1\|681630_682767_+\|protease	clan AA aspartic protease	NA	NA	NA	NA
WP_012161334.1\|682791_683502_-	GUN4 domain-containing protein	NA	NA	NA	NA
WP_012161335.1\|683609_685598_-	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	1.8e-30	24.3
WP_012161336.1\|685663_686173_+	hypothetical protein	NA	NA	NA	NA
WP_010473419.1\|686532_687051_+	NYN domain-containing protein	NA	NA	NA	NA
WP_012161337.1\|687169_688810_+	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	5.6e-06	38.6
WP_012161338.1\|688887_689388_+	hypothetical protein	NA	NA	NA	NA
WP_148215660.1\|689874_690736_+\|transposase	IS1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

1574945 : 1631872

Bacillus_phage(37.5%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012162147.1\|1574945_1576853_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	2.2e-115	42.6
WP_012162149.1\|1577251_1578034_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.6e-48	45.4
WP_012162150.1\|1578091_1579267_-	ABC transporter permease	NA	NA	NA	NA
WP_148215692.1\|1580547_1581420_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012162156.1\|1581950_1582649_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_041659330.1\|1582803_1583166_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012162158.1\|1583162_1583972_-	hypothetical protein	NA	NA	NA	NA
WP_012162159.1\|1584061_1584772_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_148215688.1\|1584888_1586020_+\|transposase	IS630-like element ISAcma29 family transposase	NA	NA	NA	NA
WP_012162160.1\|1586150_1586783_+	SMI1/KNR4 family protein	NA	NA	NA	NA
WP_076611323.1\|1586792_1587636_+\|transposase	IS1-like element ISAcma3 family transposase	NA	NA	NA	NA
WP_012162161.1\|1587739_1588624_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012162162.1\|1588731_1589742_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_012162163.1\|1589857_1590730_+	DUF4437 domain-containing protein	NA	NA	NA	NA
WP_012162165.1\|1590935_1591772_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_012162166.1\|1591771_1592767_+	LLM class oxidoreductase	NA	NA	NA	NA
WP_012162167.1\|1592780_1593599_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_041659332.1\|1593643_1594054_-	hypothetical protein	NA	NA	NA	NA
WP_012162170.1\|1594353_1595058_-	BON domain-containing protein	NA	NA	NA	NA
WP_041659333.1\|1595981_1596548_+	hypothetical protein	NA	NA	NA	NA
WP_041659334.1\|1596634_1597735_+	diguanylate cyclase	NA	NA	NA	NA
WP_041660812.1\|1597761_1600362_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_041659335.1\|1600465_1601125_-	hypothetical protein	NA	NA	NA	NA
WP_012162177.1\|1601316_1602090_+	hypothetical protein	NA	NA	NA	NA
WP_148215688.1\|1602216_1603348_+\|transposase	IS630-like element ISAcma29 family transposase	NA	NA	NA	NA
WP_012162178.1\|1603356_1604352_-	D-cysteine desulfhydrase family protein	NA	NA	NA	NA
WP_010475892.1\|1604500_1604761_-	photosystem I reaction center subunit PsaK	NA	NA	NA	NA
WP_012162179.1\|1604938_1605592_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_012162180.1\|1605816_1606755_+	diguanylate cyclase	W8CYM9	Bacillus_phage	7.8e-05	26.7
WP_012162181.1\|1606848_1607973_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_041659337.1\|1608012_1608726_-	peptidase	NA	NA	NA	NA
WP_010475901.1\|1608779_1609007_-	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_012162183.1\|1609112_1610717_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_012162184.1\|1610893_1611790_-	RnfABCDGE type electron transport complex subunit D	NA	NA	NA	NA
WP_012162185.1\|1612016_1614467_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	1.4e-178	37.9
WP_012162186.1\|1614505_1615060_+	universal stress protein	NA	NA	NA	NA
WP_012162187.1\|1615070_1615781_-	hypothetical protein	NA	NA	NA	NA
WP_012162188.1\|1615935_1617081_-	response regulator	W8CYM9	Bacillus_phage	2.3e-11	34.2
WP_012162189.1\|1617413_1619633_-	DUF3488 domain-containing protein	NA	NA	NA	NA
WP_012162190.1\|1619884_1620193_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A0E3FP00	Synechococcus_phage	4.1e-19	48.5
WP_012162191.1\|1620585_1621041_+	NAD(P)H-quinone oxidoreductase subunit N	NA	NA	NA	NA
WP_012162192.1\|1621119_1622256_+	4Fe-4S ferredoxin	NA	NA	NA	NA
WP_012162193.1\|1622296_1624030_+	AAA family ATPase	NA	NA	NA	NA
WP_012162194.1\|1624122_1624773_+	transaldolase	H6WFR1	Cyanophage	5.4e-13	28.0
WP_012162195.1\|1624769_1629671_-	AAA family ATPase	W8CYF6	Bacillus_phage	3.3e-22	30.1
WP_012162196.1\|1631071_1631872_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

2382217 : 2442712

Bathycoccus_sp._RCC1105_virus(25.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148215715.1\|2382217_2383215_-\|transposase	IS630-like element ISAcma34 family transposase	NA	NA	NA	NA
WP_012162859.1\|2383308_2385303_-	AarF/ABC1/UbiB kinase family protein	E5ES62	Bathycoccus_sp._RCC1105_virus	6.0e-47	29.8
WP_012162862.1\|2385858_2387808_+	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	M4QT32	Loktanella_phage	1.0e-54	29.2
WP_012162863.1\|2387842_2388703_+	ribonucleotide reductase	NA	NA	NA	NA
WP_041659647.1\|2388699_2389509_-	HAD family hydrolase	NA	NA	NA	NA
WP_012162865.1\|2389615_2391163_-	lycopene cyclase	NA	NA	NA	NA
WP_012162866.1\|2391199_2393335_-	FHA domain-containing protein	W8CYF6	Bacillus_phage	8.0e-21	27.6
WP_012162867.1\|2393917_2394394_-	hypothetical protein	NA	NA	NA	NA
WP_012162868.1\|2394534_2395158_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_148215716.1\|2395309_2395702_+	hypothetical protein	NA	NA	NA	NA
WP_012162870.1\|2395919_2399132_+	glycosyl hydrolase family 15	NA	NA	NA	NA
WP_012162871.1\|2399146_2399860_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_012162872.1\|2399943_2400609_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012162873.1\|2400622_2401633_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_012162874.1\|2401771_2402383_-	hypothetical protein	NA	NA	NA	NA
WP_148215717.1\|2402542_2402944_+	hypothetical protein	NA	NA	NA	NA
WP_012160919.1\|2402872_2404183_-\|transposase	IS701-like element ISAcma8 family transposase	NA	NA	NA	NA
WP_041659654.1\|2406198_2406543_-	hypothetical protein	NA	NA	NA	NA
WP_012162879.1\|2406862_2407369_+	3'-5' exonuclease	NA	NA	NA	NA
WP_012162880.1\|2407583_2408636_-\|transposase	IS701-like element ISAcma22 family transposase	NA	NA	NA	NA
WP_148215638.1\|2408972_2410128_+\|transposase	IS3-like element ISAcma13 family transposase	H6WZH1	Escherichia_phage	3.4e-26	31.9
WP_148215718.1\|2411514_2411841_+	hypothetical protein	NA	NA	NA	NA
WP_076611922.1\|2412037_2413127_-\|transposase	ISAs1-like element ISAcma12 family transposase	NA	NA	NA	NA
WP_012162883.1\|2413196_2413352_-	hypothetical protein	NA	NA	NA	NA
WP_063710519.1\|2413393_2414443_-	DNA modification methylase	NA	NA	NA	NA
WP_012162885.1\|2414522_2416565_-	DUF87 domain-containing protein	NA	NA	NA	NA
WP_012162886.1\|2416590_2417736_-	hypothetical protein	NA	NA	NA	NA
WP_012162887.1\|2418067_2419969_-	transketolase	NA	NA	NA	NA
WP_012162888.1\|2420199_2420763_-	adenylate kinase	NA	NA	NA	NA
WP_012162889.1\|2421137_2421845_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_187152931.1\|2421894_2422386_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012162891.1\|2422626_2423571_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	1.1e-78	53.7
WP_012162892.1\|2423643_2424081_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_012162893.1\|2424193_2425033_-	prepilin peptidase	NA	NA	NA	NA
WP_041660852.1\|2425163_2425448_-	hypothetical protein	NA	NA	NA	NA
WP_012162895.1\|2425866_2427552_+	DUF3352 domain-containing protein	NA	NA	NA	NA
WP_012162896.1\|2427599_2427878_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_012162897.1\|2427901_2428672_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_012162898.1\|2428717_2429398_-	2OG-Fe(II) oxygenase	E3SK82	Synechococcus_phage	5.4e-24	42.7
WP_012162900.1\|2430156_2431479_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_148215719.1\|2431743_2432106_+	hypothetical protein	NA	NA	NA	NA
WP_012162902.1\|2432323_2433778_-	DASH family cryptochrome	A0A1V0S949	Catovirus	6.4e-46	29.4
WP_012162903.1\|2433780_2435475_-	TolC family protein	NA	NA	NA	NA
WP_049783828.1\|2435624_2436776_-	tocopherol cyclase family protein	NA	NA	NA	NA
WP_041659656.1\|2437220_2438570_-	DUF3747 domain-containing protein	NA	NA	NA	NA
WP_041659659.1\|2438725_2439436_-	TIGR04283 family arsenosugar biosynthesis glycosyltransferase	NA	NA	NA	NA
WP_041659661.1\|2439425_2440130_-	TIGR04282 family arsenosugar biosynthesis glycosyltransferase	NA	NA	NA	NA
WP_012162908.1\|2440169_2440607_-	hypothetical protein	NA	NA	NA	NA
WP_012162910.1\|2440876_2442712_-\|protease	ATP-dependent zinc metalloprotease FtsH3	E5ESM9	Bathycoccus_sp._RCC1105_virus	3.0e-133	45.7

DBSCAN-SWA_8

3714415 : 3758515

Arthrobacter_phage(28.57%)

tail,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012164037.1\|3714415_3715423_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_012164038.1\|3715433_3716999_-	DUF4335 domain-containing protein	NA	NA	NA	NA
WP_012164039.1\|3717058_3717664_-	DUF3038 domain-containing protein	NA	NA	NA	NA
WP_041660940.1\|3717688_3718624_-	quaternary ammonium transporter	NA	NA	NA	NA
WP_063710528.1\|3718732_3719182_-	DUF4168 domain-containing protein	NA	NA	NA	NA
WP_012164042.1\|3719352_3720372_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_012164043.1\|3720563_3721184_+	cobalt-precorrin-8X methylmutase	NA	NA	NA	NA
WP_012164044.1\|3721183_3722440_+	bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase	NA	NA	NA	NA
WP_010469678.1\|3722570_3722954_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_012164045.1\|3723488_3724538_+	succinate dehydrogenase/fumarate reductase iron-sulfur subunit	NA	NA	NA	NA
WP_012164046.1\|3724651_3724846_+	high light inducible protein	NA	NA	NA	NA
WP_012164047.1\|3724912_3725512_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	5.4e-44	43.3
WP_012164048.1\|3725805_3726885_-	phytoene/squalene synthase family protein	NA	NA	NA	NA
WP_012164049.1\|3727131_3727824_+	hypothetical protein	NA	NA	NA	NA
WP_187152888.1\|3727839_3728796_-	3'(2'),5'-bisphosphate nucleotidase	NA	NA	NA	NA
WP_012164051.1\|3728855_3729170_-	hypothetical protein	NA	NA	NA	NA
WP_012164052.1\|3729180_3729873_-	magnesium protoporphyrin IX methyltransferase	NA	NA	NA	NA
WP_010469696.1\|3730106_3730382_-	hypothetical protein	NA	NA	NA	NA
WP_012164053.1\|3730617_3731499_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012164054.1\|3731544_3732018_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012164055.1\|3732042_3732237_-	hypothetical protein	NA	NA	NA	NA
WP_012164056.1\|3732302_3732722_-	transcriptional repressor	NA	NA	NA	NA
WP_012164057.1\|3732923_3733496_+	peroxiredoxin	A0A1D8KSL1	Synechococcus_phage	1.1e-46	62.3
WP_012164058.1\|3733604_3734963_+	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	4.4e-41	28.4
WP_010469708.1\|3735091_3735562_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA
WP_012164060.1\|3735760_3736048_-	hypothetical protein	NA	NA	NA	NA
WP_012164062.1\|3736484_3736961_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012164063.1\|3737121_3737433_+	hypothetical protein	NA	NA	NA	NA
WP_012164064.1\|3737501_3738002_+\|tail	phage tail protein	A0A2R4A082	Microbacterium_phage	5.8e-15	34.8
WP_010469718.1\|3738017_3738536_+\|tail	phage tail protein	A0A222ZI07	Arthrobacter_phage	2.1e-20	37.0
WP_012164065.1\|3738546_3739065_+\|tail	phage tail protein	A0A218M5J9	Arthrobacter_phage	2.6e-18	35.2
WP_012164066.1\|3739155_3749949_-	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_012164067.1\|3750636_3752115_+	9,9'-di-cis-zeta-carotene desaturase	NA	NA	NA	NA
WP_012164068.1\|3752099_3752543_+	SRPBCC family protein	NA	NA	NA	NA
WP_012164069.1\|3752600_3753197_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012160773.1\|3753325_3754576_+\|transposase	IS256-like element ISAcma7 family transposase	A0A218MNI5	uncultured_virus	3.3e-51	49.5
WP_012161283.1\|3755029_3755227_+	hypothetical protein	NA	NA	NA	NA
WP_012161282.1\|3755223_3756441_+\|transposase	IS4-like element ISAcma18 family transposase	NA	NA	NA	NA
WP_148215756.1\|3756388_3756937_-	hypothetical protein	NA	NA	NA	NA
WP_012164071.1\|3756975_3757545_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_148215757.1\|3757642_3758515_+\|transposase	IS630-like element ISAcma25 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

3911587 : 3976536

Hokovirus(33.33%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012161013.1\|3911587_3912517_+\|transposase	IS5-like element ISAcma6 family transposase	Q1MVF0	Enterobacteria_phage	2.8e-63	42.0
WP_012164215.1\|3914002_3915220_-\|transposase	IS4-like element ISAcma18 family transposase	NA	NA	NA	NA
WP_012161283.1\|3915216_3915414_-	hypothetical protein	NA	NA	NA	NA
WP_012164217.1\|3915689_3917018_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_012164218.1\|3917017_3918166_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_012164219.1\|3918203_3920405_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_063710553.1\|3920438_3922775_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	3.0e-13	25.6
WP_083776724.1\|3923039_3925163_-	CHASE domain-containing protein	A0A1V0SGX0	Hokovirus	1.2e-16	30.4
WP_012164222.1\|3925259_3925682_-	response regulator	NA	NA	NA	NA
WP_012164226.1\|3926623_3928450_+	EAL domain-containing protein	NA	NA	NA	NA
WP_012164227.1\|3928606_3929173_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_012164228.1\|3929169_3930006_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012164229.1\|3930011_3930653_-	hypothetical protein	NA	NA	NA	NA
WP_012164230.1\|3930811_3932032_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012164231.1\|3932062_3933997_-	sulfite reductase, ferredoxin dependent	NA	NA	NA	NA
WP_010472220.1\|3934369_3934549_-	hypothetical protein	NA	NA	NA	NA
WP_012164232.1\|3935127_3936042_+	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_029315129.1\|3936177_3936357_+	hypothetical protein	NA	NA	NA	NA
WP_012164235.1\|3936565_3937054_+	cytochrome c-550	NA	NA	NA	NA
WP_083776725.1\|3937061_3937640_+	photosystem II cytochrome PsbV2	NA	NA	NA	NA
WP_012164237.1\|3937881_3938211_+	c-type cytochrome	NA	NA	NA	NA
WP_012164238.1\|3938362_3939262_+	ChaN family lipoprotein	NA	NA	NA	NA
WP_012164239.1\|3939278_3939584_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_012164240.1\|3939675_3940407_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_049783751.1\|3940478_3940934_+	hypothetical protein	NA	NA	NA	NA
WP_012164242.1\|3940951_3942052_-\|tRNA	tRNA (guanine-N1)-methyltransferase	NA	NA	NA	NA
WP_012164243.1\|3942097_3943003_-	DUF3632 domain-containing protein	NA	NA	NA	NA
WP_012164244.1\|3942999_3945285_-	hypothetical protein	NA	NA	NA	NA
WP_012164245.1\|3945403_3945685_-	hypothetical protein	NA	NA	NA	NA
WP_175307201.1\|3945688_3946033_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_012164247.1\|3946194_3947091_+	phosphorylase	NA	NA	NA	NA
WP_010472192.1\|3947373_3947583_+	high light inducible protein	NA	NA	NA	NA
WP_012164248.1\|3947638_3948301_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012164249.1\|3948352_3948853_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012164250.1\|3949346_3949958_+	hypothetical protein	NA	NA	NA	NA
WP_012164251.1\|3950033_3951527_+\|protease	serine protease	NA	NA	NA	NA
WP_012164252.1\|3951724_3953668_-	lipoxygenase	NA	NA	NA	NA
WP_012164253.1\|3954116_3955508_+	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_012164254.1\|3955557_3956202_-	hypothetical protein	NA	NA	NA	NA
WP_012164256.1\|3956564_3959480_-\|tRNA	isoleucine--tRNA ligase	A0A2P1ELB8	Moumouvirus	5.1e-79	27.0
WP_012164257.1\|3959613_3961254_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_041659933.1\|3961394_3962984_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_012164259.1\|3963043_3964318_-	hypothetical protein	NA	NA	NA	NA
WP_010472156.1\|3964582_3965260_-	hypothetical protein	NA	NA	NA	NA
WP_049783752.1\|3965382_3967329_-	serine/threonine protein kinase	I6PD73	Cronobacter_phage	6.4e-09	31.8
WP_041659935.1\|3967828_3968068_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_012164263.1\|3968068_3969010_-	serine hydrolase	NA	NA	NA	NA
WP_010472147.1\|3969332_3969875_+	response regulator	NA	NA	NA	NA
WP_010472144.1\|3969893_3970496_-	recombination protein RecR	NA	NA	NA	NA
WP_012164264.1\|3970538_3971645_-	A/G-specific adenine glycosylase	G3CB03	Aeropyrum_pernix_spindle-shaped_virus	3.7e-30	34.2
WP_012164265.1\|3972028_3972808_+	hypothetical protein	NA	NA	NA	NA
WP_012164267.1\|3973785_3974136_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_148215757.1\|3974263_3975137_+\|transposase	IS630-like element ISAcma25 family transposase	NA	NA	NA	NA
WP_012160919.1\|3975225_3976536_+\|transposase	IS701-like element ISAcma8 family transposase	NA	NA	NA	NA

DBSCAN-SWA_10

4216784 : 4268845

Acanthocystis_turfacea_Chlorella_virus(50.0%)

integrase,transposase

attL 4246458:4246472|attR 4273346:4273360

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148215670.1\|4216784_4217657_+\|transposase	IS630-like element ISAcma25 family transposase	NA	NA	NA	NA
WP_012164510.1\|4217902_4218247_+	hypothetical protein	NA	NA	NA	NA
WP_012162310.1\|4219459_4220878_-\|transposase	IS4-like element ISAcma16 family transposase	NA	NA	NA	NA
WP_012164514.1\|4222158_4222515_-	hypothetical protein	NA	NA	NA	NA
WP_012164515.1\|4222810_4223293_-	hypothetical protein	NA	NA	NA	NA
WP_012164516.1\|4223439_4223763_-	STAS domain-containing protein	NA	NA	NA	NA
WP_148215771.1\|4224180_4225191_+	agmatine deiminase family protein	M1HCB6	Acanthocystis_turfacea_Chlorella_virus	7.3e-49	33.4
WP_041660006.1\|4225866_4226739_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_012164521.1\|4226744_4226885_+	hypothetical protein	NA	NA	NA	NA
WP_148215772.1\|4226962_4228079_+\|transposase	IS630-like element ISAcma35 family transposase	NA	NA	NA	NA
WP_012164525.1\|4230485_4232546_+	VWA domain-containing protein	NA	NA	NA	NA
WP_010480540.1\|4232838_4233174_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012164526.1\|4233274_4234096_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_041660007.1\|4234120_4234303_-	hypothetical protein	NA	NA	NA	NA
WP_049783841.1\|4234395_4236285_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.9e-30	35.8
WP_012164530.1\|4236936_4239243_-	VacB/RNase II family 3'-5' exoribonuclease	NA	NA	NA	NA
WP_041660009.1\|4239729_4240401_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_012164533.1\|4240819_4241500_+	hypothetical protein	NA	NA	NA	NA
WP_012164534.1\|4241709_4242324_+	CPP1-like family protein	NA	NA	NA	NA
WP_012164535.1\|4242501_4243443_-	glycosyltransferase	NA	NA	NA	NA
WP_012164536.1\|4243492_4244263_-	hypothetical protein	NA	NA	NA	NA
WP_012164537.1\|4244334_4244991_-	hypothetical protein	NA	NA	NA	NA
WP_012164538.1\|4245031_4245328_-	hypothetical protein	NA	NA	NA	NA
WP_041660967.1\|4245468_4246491_+	hypothetical protein	NA	NA	NA	NA
4246458:4246472	attL	NA	NA	NA	NA
WP_012164540.1\|4246707_4247073_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012164541.1\|4247074_4249291_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012164544.1\|4249732_4250125_-	hypothetical protein	NA	NA	NA	NA
WP_012160919.1\|4250627_4251938_+\|transposase	IS701-like element ISAcma8 family transposase	NA	NA	NA	NA
WP_012164545.1\|4253293_4254493_+	argininosuccinate synthase	NA	NA	NA	NA
WP_012164546.1\|4254513_4254993_-	hypothetical protein	NA	NA	NA	NA
WP_029315029.1\|4255311_4256097_+	MlaE family lipid ABC transporter permease subunit	NA	NA	NA	NA
WP_012164548.1\|4256147_4256534_+	DUF3119 family protein	NA	NA	NA	NA
WP_012164549.1\|4256582_4257689_+	DUF3086 domain-containing protein	NA	NA	NA	NA
WP_012164550.1\|4257842_4258871_+	rod shape-determining protein	NA	NA	NA	NA
WP_012164551.1\|4258939_4259617_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_041660010.1\|4259747_4260125_+	hypothetical protein	NA	NA	NA	NA
WP_148215773.1\|4260225_4260597_+	hypothetical protein	NA	NA	NA	NA
WP_012164554.1\|4260734_4262657_-	DUF11 domain-containing protein	NA	NA	NA	NA
WP_012164556.1\|4263631_4265125_-	cobyric acid synthase	NA	NA	NA	NA
WP_012164557.1\|4265124_4265502_-	hypothetical protein	NA	NA	NA	NA
WP_012164558.1\|4265541_4266777_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_012164559.1\|4266855_4267371_-	metal-binding protein	NA	NA	NA	NA
WP_041660012.1\|4267747_4268845_+\|integrase	site-specific integrase	NA	NA	NA	NA
4273346:4273360	attR	NA	NA	NA	NA

DBSCAN-SWA_11

5296841 : 5352032

Acanthamoeba_castellanii_mimivirus(16.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076611697.1\|5296841_5297939_+\|transposase	IS630-like element ISAcma32 family transposase	NA	NA	NA	NA
WP_041660306.1\|5298012_5298828_+	alpha/beta hydrolase	A0A1E1ETD5	Acanthamoeba_castellanii_mimivirus	1.5e-20	33.5
WP_012165454.1\|5299064_5300249_+	MFS transporter	NA	NA	NA	NA
WP_041660308.1\|5300234_5301797_-	hypothetical protein	NA	NA	NA	NA
WP_012165456.1\|5302123_5303854_-	AIPR family protein	NA	NA	NA	NA
WP_012165457.1\|5304193_5305087_+	ribokinase	NA	NA	NA	NA
WP_012165458.1\|5305190_5306051_+	DUF1460 domain-containing protein	NA	NA	NA	NA
WP_012165459.1\|5306168_5306759_+	superoxide dismutase family protein	E5EQ52	Micromonas_sp._RCC1109_virus	5.1e-18	41.7
WP_083776738.1\|5307897_5308632_+	HPP family protein	NA	NA	NA	NA
WP_012165463.1\|5308733_5309096_+	hypothetical protein	NA	NA	NA	NA
WP_012165464.1\|5309413_5310337_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012165466.1\|5311019_5312711_-	cation acetate symporter	NA	NA	NA	NA
WP_012165467.1\|5312715_5312979_-	DUF4212 domain-containing protein	NA	NA	NA	NA
WP_012165468.1\|5313476_5315492_-	carbohydrate porin	Q5GQG9	Synechococcus_phage	7.5e-13	46.2
WP_148215963.1\|5316219_5317902_-	DUF2808 domain-containing protein	NA	NA	NA	NA
WP_012165470.1\|5318329_5319781_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012165471.1\|5319967_5321434_+	TIGR04222 domain-containing membrane protein	NA	NA	NA	NA
WP_012165472.1\|5321442_5321601_-	hypothetical protein	NA	NA	NA	NA
WP_187152902.1\|5321660_5323553_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_012165474.1\|5323768_5324104_-	hypothetical protein	NA	NA	NA	NA
WP_012165475.1\|5324672_5326484_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	2.6e-28	27.1
WP_012165476.1\|5326699_5327170_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_012165477.1\|5327389_5327980_+	hypothetical protein	NA	NA	NA	NA
WP_010477705.1\|5327988_5328822_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_012165479.1\|5329778_5330585_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_012165480.1\|5330594_5331986_-	two-component sensor histidine kinase	NA	NA	NA	NA
WP_010477699.1\|5332029_5332788_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.6e-35	36.9
WP_012165482.1\|5332905_5333928_-	DMT family transporter	NA	NA	NA	NA
WP_012165483.1\|5334059_5335250_-	sodium/glutamate symporter	NA	NA	NA	NA
WP_012165484.1\|5335246_5336683_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.7e-67	34.2
WP_012165485.1\|5337582_5337747_+	hypothetical protein	NA	NA	NA	NA
WP_148215810.1\|5338007_5338837_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012165487.1\|5339369_5339555_+	hypothetical protein	NA	NA	NA	NA
WP_012165488.1\|5340121_5340904_-	DUF4253 domain-containing protein	NA	NA	NA	NA
WP_041660316.1\|5341003_5341312_-	hypothetical protein	NA	NA	NA	NA
WP_076611697.1\|5341399_5342497_+\|transposase	IS630-like element ISAcma32 family transposase	NA	NA	NA	NA
WP_049783774.1\|5342708_5343671_+	MoxR family ATPase	NA	NA	NA	NA
WP_012165492.1\|5343674_5344637_+	MoxR family ATPase	NA	NA	NA	NA
WP_012165493.1\|5344640_5345972_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_012165494.1\|5345968_5348734_+	transglutaminase	NA	NA	NA	NA
WP_012162310.1\|5348779_5350198_-\|transposase	IS4-like element ISAcma16 family transposase	NA	NA	NA	NA
WP_049783776.1\|5350418_5350799_+	hypothetical protein	NA	NA	NA	NA
WP_012165498.1\|5350868_5352032_+\|transposase	IS701-like element ISAcma37 family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

5672864 : 5746445

Paramecium_bursaria_Chlorella_virus(10.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012165780.1\|5672864_5673146_+\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_148215826.1\|5673296_5673665_-	hypothetical protein	NA	NA	NA	NA
WP_063710537.1\|5673773_5674151_-	hypothetical protein	NA	NA	NA	NA
WP_012165783.1\|5674297_5675629_-	16S rRNA (cytosine(967)-C(5))-methyltransferase	NA	NA	NA	NA
WP_041660508.1\|5676243_5676570_+	transcriptional regulator	NA	NA	NA	NA
WP_012165787.1\|5676741_5677866_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012165788.1\|5677996_5678326_+	DUF3181 family protein	NA	NA	NA	NA
WP_049783783.1\|5678334_5680050_+	hypothetical protein	NA	NA	NA	NA
WP_012165790.1\|5680146_5681085_+	ornithine carbamoyltransferase	M1I6M4	Paramecium_bursaria_Chlorella_virus	9.5e-19	28.0
WP_012165791.1\|5681117_5682464_+	TIGR03279 family radical SAM protein	NA	NA	NA	NA
WP_041660510.1\|5682852_5684637_+	EAL domain-containing protein	NA	NA	NA	NA
WP_012165794.1\|5684803_5685835_+	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	1.4e-63	39.4
WP_012165795.1\|5685890_5686541_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_148215971.1\|5686525_5686984_-	type II secretion system protein	NA	NA	NA	NA
WP_012165797.1\|5687422_5689252_+	SpoIID/LytB domain-containing protein	Q2XU88	Pseudomonas_phage	4.0e-05	32.3
WP_012165798.1\|5689289_5690447_-	AI-2E family transporter	NA	NA	NA	NA
WP_041660512.1\|5690558_5691335_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012165801.1\|5691630_5692815_+	ArsA family ATPase	NA	NA	NA	NA
WP_012165802.1\|5692883_5693627_+	3-oxoacyl-[acyl-carrier-protein] reductase	Q06VL0	Trichoplusia_ni_ascovirus	3.4e-19	35.6
WP_012165803.1\|5693841_5694819_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_012165804.1\|5695037_5695763_+	SDR family oxidoreductase	A0A0K0KVL6	Prochlorococcus_phage	1.3e-10	37.0
WP_148215972.1\|5695869_5696523_+	GTP cyclohydrolase I FolE	A0A0B5J000	Pandoravirus	2.5e-50	59.3
WP_012165806.1\|5696629_5697085_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_041660515.1\|5697100_5698378_-	response regulator	NA	NA	NA	NA
WP_012165808.1\|5698389_5700807_-	CHASE2 domain-containing protein	A0A1V0SGX0	Hokovirus	5.1e-40	41.5
WP_148215827.1\|5701018_5701201_+	hypothetical protein	NA	NA	NA	NA
WP_012165810.1\|5701214_5701409_+	hypothetical protein	NA	NA	NA	NA
WP_063710538.1\|5701420_5702326_+	DUF928 domain-containing protein	NA	NA	NA	NA
WP_012165813.1\|5702378_5708657_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_012165814.1\|5708679_5709717_-	dihydroorotase	NA	NA	NA	NA
WP_041661053.1\|5710147_5710564_+	toxin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_049783853.1\|5710854_5711379_+	toxin-activating lysine-acyltransferase	NA	NA	NA	NA
WP_012165817.1\|5711589_5715795_+	calcium-binding protein	NA	NA	NA	NA
WP_012165818.1\|5716225_5716807_+	hypothetical protein	NA	NA	NA	NA
WP_187152945.1\|5716781_5717423_-\|transposase	transposase	NA	NA	NA	NA
WP_049783712.1\|5717493_5718030_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012165820.1\|5719951_5720209_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_012165822.1\|5720350_5720944_+	hypothetical protein	NA	NA	NA	NA
WP_012162310.1\|5721193_5722612_+\|transposase	IS4-like element ISAcma16 family transposase	NA	NA	NA	NA
WP_012161146.1\|5722618_5723656_-\|transposase	IS701-like element ISAcma42 family transposase	NA	NA	NA	NA
WP_012165825.1\|5723711_5724434_-	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	7.5e-64	52.3
WP_012165826.1\|5724526_5725243_-	DNA alkylation repair protein	NA	NA	NA	NA
WP_012165827.1\|5725232_5725523_-	DUF4090 family protein	NA	NA	NA	NA
WP_012165828.1\|5725709_5727182_-	DNA repair protein RadA	NA	NA	NA	NA
WP_010477475.1\|5727340_5728072_+	response regulator transcription factor	W8CYM9	Bacillus_phage	6.9e-41	40.4
WP_083776742.1\|5728149_5729028_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_187152960.1\|5728984_5729986_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_012165832.1\|5730108_5732637_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_012165833.1\|5732947_5735452_+	CBS domain-containing protein	Q8QKV7	Ectocarpus_siliculosus_virus	9.0e-40	30.0
WP_012165834.1\|5735496_5735643_-	hypothetical protein	NA	NA	NA	NA
WP_012165836.1\|5736155_5736947_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_012165837.1\|5737094_5737622_+	hypothetical protein	NA	NA	NA	NA
WP_012165838.1\|5737633_5738257_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012165839.1\|5738260_5739160_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012165840.1\|5739259_5739913_-	hypothetical protein	NA	NA	NA	NA
WP_012165841.1\|5740533_5741241_+	hypothetical protein	NA	NA	NA	NA
WP_148215829.1\|5741281_5742418_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_012165843.1\|5742456_5743551_+	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	NA	NA	NA	NA
WP_012160919.1\|5743963_5745274_-\|transposase	IS701-like element ISAcma8 family transposase	NA	NA	NA	NA
WP_012165844.1\|5745347_5746445_-\|transposase	IS630-like element ISAcma41 family transposase	NA	NA	NA	NA

DBSCAN-SWA_13

5896003 : 5963110

Hokovirus(25.0%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012161164.1\|5896003_5897587_+\|transposase	IS5-like element ISAcma17 family transposase	NA	NA	NA	NA
WP_012165974.1\|5897982_5898198_+	DUF2949 domain-containing protein	NA	NA	NA	NA
WP_012165975.1\|5898717_5900184_+	hypothetical protein	NA	NA	NA	NA
WP_012165976.1\|5900186_5900774_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_012165979.1\|5901331_5902165_+	type II secretion system protein	NA	NA	NA	NA
WP_012165980.1\|5902188_5903220_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_148215834.1\|5903359_5904242_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_041660561.1\|5904419_5904776_+	hypothetical protein	NA	NA	NA	NA
WP_012165983.1\|5906104_5906371_+	hypothetical protein	NA	NA	NA	NA
WP_012165984.1\|5906349_5906868_+	hypothetical protein	NA	NA	NA	NA
WP_012165986.1\|5906991_5907927_+	ATP-binding protein	NA	NA	NA	NA
WP_012165987.1\|5907923_5908187_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_148215715.1\|5908256_5909253_+\|transposase	IS630-like element ISAcma34 family transposase	NA	NA	NA	NA
WP_012165990.1\|5910057_5911155_+	ATP-binding protein	NA	NA	NA	NA
WP_041660564.1\|5911156_5911444_+	hypothetical protein	NA	NA	NA	NA
WP_012165992.1\|5911416_5912214_+	hypothetical protein	NA	NA	NA	NA
WP_012165993.1\|5912268_5913213_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012165994.1\|5913222_5914182_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_012165995.1\|5914286_5915165_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041660567.1\|5915389_5915644_+	hypothetical protein	NA	NA	NA	NA
WP_187152962.1\|5915590_5915860_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012160803.1\|5916050_5917295_+\|transposase	ISL3-like element ISAcma10 family transposase	A0A2D1GQC1	Lysinibacillus_phage	5.8e-24	26.1
WP_148215836.1\|5917867_5919250_+	hypothetical protein	NA	NA	NA	NA
WP_012166005.1\|5920544_5921402_-	type IV pilin	NA	NA	NA	NA
WP_012166006.1\|5921473_5921656_+	hypothetical protein	NA	NA	NA	NA
WP_041660570.1\|5921908_5922496_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_012166008.1\|5922589_5923939_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.3e-20	39.0
WP_012166009.1\|5923950_5926302_-	EAL domain-containing protein	G3MA91	Bacillus_virus	1.0e-21	39.2
WP_148215837.1\|5928323_5928665_-	hypothetical protein	NA	NA	NA	NA
WP_012166015.1\|5928705_5928996_+	hypothetical protein	NA	NA	NA	NA
WP_012166016.1\|5929254_5929527_+	hypothetical protein	NA	NA	NA	NA
WP_012166017.1\|5929610_5930549_-	DUF4351 domain-containing protein	NA	NA	NA	NA
WP_012166018.1\|5930779_5931034_-	hypothetical protein	NA	NA	NA	NA
WP_012166019.1\|5931185_5931374_-	hypothetical protein	NA	NA	NA	NA
WP_012166020.1\|5931574_5931712_+	hypothetical protein	NA	NA	NA	NA
WP_010481246.1\|5931962_5932313_+	hypothetical protein	NA	NA	NA	NA
WP_012166021.1\|5932343_5932646_+	DUF2958 domain-containing protein	NA	NA	NA	NA
WP_012166022.1\|5932747_5933659_+	DNA adenine methylase	Q5QF26	Pseudomonas_virus	4.4e-45	39.4
WP_010481253.1\|5933841_5934093_+	UPF0175 family protein	NA	NA	NA	NA
WP_012166023.1\|5934085_5934583_+	DUF3368 domain-containing protein	NA	NA	NA	NA
WP_012166024.1\|5934955_5935864_-	M23 family metallopeptidase	A8ATH6	Listeria_phage	2.3e-14	44.8
WP_012166026.1\|5936259_5937963_+	YdiU family protein	NA	NA	NA	NA
WP_012166027.1\|5938061_5938694_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_012166028.1\|5938690_5939212_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_012166029.1\|5939189_5939927_-	type II secretion system protein	NA	NA	NA	NA
WP_012166030.1\|5939984_5941334_-	hypothetical protein	NA	NA	NA	NA
WP_012166031.1\|5943045_5943861_-	hypothetical protein	NA	NA	NA	NA
WP_012166032.1\|5944005_5945520_-	hypothetical protein	NA	NA	NA	NA
WP_012162310.1\|5945790_5947209_-\|transposase	IS4-like element ISAcma16 family transposase	NA	NA	NA	NA
WP_012166034.1\|5947368_5947842_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_012166036.1\|5948492_5949089_-	PAS domain-containing protein	NA	NA	NA	NA
WP_012166037.1\|5949103_5953612_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	6.0e-18	28.5
WP_012166039.1\|5954223_5956767_+	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	9.2e-24	25.2
WP_012166040.1\|5956781_5957189_+	response regulator	NA	NA	NA	NA
WP_012166041.1\|5957216_5957645_-	response regulator	NA	NA	NA	NA
WP_012166042.1\|5957805_5960241_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	5.2e-16	29.0
WP_012166044.1\|5960639_5961131_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012166045.1\|5961257_5962133_+	EamA family transporter	NA	NA	NA	NA
WP_012166046.1\|5962407_5962698_+	hypothetical protein	NA	NA	NA	NA
WP_012166047.1\|5962750_5963110_-\|holin	phage holin family protein	NA	NA	NA	NA

DBSCAN-SWA_14

6104457 : 6167930

Bacillus_phage(22.22%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148215692.1\|6104457_6105330_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_071819995.1\|6105396_6105549_-	DUF2887 domain-containing protein	NA	NA	NA	NA
WP_148215978.1\|6105875_6107147_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_012166156.1\|6107157_6108126_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_012166157.1\|6108131_6108389_+	hypothetical protein	NA	NA	NA	NA
WP_076611323.1\|6108876_6109720_+\|transposase	IS1-like element ISAcma3 family transposase	NA	NA	NA	NA
WP_012166160.1\|6110376_6111198_+	sulfotransferase domain-containing protein	NA	NA	NA	NA
WP_012166161.1\|6111307_6112324_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_012166162.1\|6112334_6113777_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_012166163.1\|6113912_6114818_-	hypothetical protein	NA	NA	NA	NA
WP_012166164.1\|6115083_6116184_-	ArsA family ATPase	NA	NA	NA	NA
WP_010473025.1\|6116190_6116388_-	DUF2862 domain-containing protein	NA	NA	NA	NA
WP_012166165.1\|6116510_6116807_-	hypothetical protein	NA	NA	NA	NA
WP_012166166.1\|6117057_6117474_+	hypothetical protein	NA	NA	NA	NA
WP_012166167.1\|6117613_6119704_+	hypothetical protein	NA	NA	NA	NA
WP_083776775.1\|6119783_6120320_-\|transposase	transposase	Q75QL1	Wolbachia_phage	8.3e-28	42.2
WP_012166169.1\|6121049_6122003_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.2e-26	34.9
WP_012166170.1\|6122003_6123692_+	hypothetical protein	NA	NA	NA	NA
WP_012166171.1\|6123723_6124686_-	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_012166172.1\|6124685_6125381_-	dTMP kinase	M1PSC7	Streptococcus_phage	6.5e-41	42.5
WP_012166173.1\|6125430_6125676_-	hypothetical protein	NA	NA	NA	NA
WP_012166174.1\|6126344_6126626_+	hypothetical protein	NA	NA	NA	NA
WP_012166175.1\|6126626_6127331_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012166176.1\|6127479_6128535_-	photosystem II D2 protein (photosystem q(a) protein)	A0A1D8KQ83	Synechococcus_phage	1.8e-183	86.0
WP_012166177.1\|6128930_6129092_+	hypothetical protein	NA	NA	NA	NA
WP_012166178.1\|6129255_6131370_+	hypothetical protein	NA	NA	NA	NA
WP_012166179.1\|6131710_6134134_-	sucrose synthase	NA	NA	NA	NA
WP_012166180.1\|6134290_6134644_-	DUF1257 domain-containing protein	NA	NA	NA	NA
WP_012166181.1\|6134770_6136273_-	AAA family ATPase	U5XJW0	Phormidium_phage	7.6e-103	40.4
WP_012166182.1\|6136354_6136681_-	hypothetical protein	NA	NA	NA	NA
WP_012166183.1\|6136800_6137493_-	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_012166184.1\|6137553_6138438_-	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.5e-21	35.8
WP_012166186.1\|6138709_6140428_-	gamma-glutamyltransferase	NA	NA	NA	NA
WP_012166187.1\|6140569_6143197_-	NACHT domain-containing protein	NA	NA	NA	NA
WP_010473062.1\|6143605_6144286_+	hypothetical protein	NA	NA	NA	NA
WP_012166188.1\|6144427_6144622_+	hypothetical protein	NA	NA	NA	NA
WP_012166190.1\|6146207_6147872_+	histidine decarboxylase	A0A2P0VP20	Tetraselmis_virus	9.7e-75	40.2
WP_012166191.1\|6148013_6148421_+	hypothetical protein	NA	NA	NA	NA
WP_012166192.1\|6148625_6149234_-	hypothetical protein	NA	NA	NA	NA
WP_148215979.1\|6149494_6149749_-	hypothetical protein	NA	NA	NA	NA
WP_012162310.1\|6150218_6151637_+\|transposase	IS4-like element ISAcma16 family transposase	NA	NA	NA	NA
WP_012166194.1\|6151662_6153801_-\|protease	serine protease	NA	NA	NA	NA
WP_012166196.1\|6154346_6155180_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012166197.1\|6155563_6155923_-	hypothetical protein	NA	NA	NA	NA
WP_012166198.1\|6156190_6156640_-	response regulator	W8CYM9	Bacillus_phage	6.1e-16	33.3
WP_012166199.1\|6156659_6158315_-	GAF domain-containing hybrid sensor histidine kinase/response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	4.2e-38	30.1
WP_012166200.1\|6158311_6161821_-	hypothetical protein	NA	NA	NA	NA
WP_041661079.1\|6162254_6162629_-	VOC family protein	NA	NA	NA	NA
WP_012166201.1\|6162776_6163550_-	hypothetical protein	NA	NA	NA	NA
WP_148215843.1\|6163710_6164322_-	hypothetical protein	NA	NA	NA	NA
WP_012166204.1\|6164560_6165796_+	lycopene cyclase family protein	NA	NA	NA	NA
WP_071819972.1\|6165810_6166290_-	GFA family protein	NA	NA	NA	NA
WP_012161164.1\|6166346_6167930_-\|transposase	IS5-like element ISAcma17 family transposase	NA	NA	NA	NA

DBSCAN-SWA_15

6203875 : 6239002

Enterobacteria_phage(28.57%)

integrase,transposase

attL 6200029:6200043|attR 6245910:6245924

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
6200029:6200043	attL	NA	NA	NA	NA
WP_012166248.1\|6203875_6205549_-\|transposase	ISL3-like element ISAcma23 family transposase	NA	NA	NA	NA
WP_012166248.1\|6205693_6207367_-\|transposase	ISL3-like element ISAcma23 family transposase	NA	NA	NA	NA
WP_148215980.1\|6207758_6208328_-\|integrase	tyrosine-type recombinase/integrase	A0A2P1A0S4	Gordonia_phage	3.0e-07	29.8
WP_012161013.1\|6208445_6209375_-\|transposase	IS5-like element ISAcma6 family transposase	Q1MVF0	Enterobacteria_phage	2.8e-63	42.0
WP_012166253.1\|6210033_6210249_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_010479416.1\|6210235_6210457_+	type II toxin-antitoxin system HicB family antitoxin	G9BWD3	Planktothrix_phage	1.4e-10	47.1
WP_010479413.1\|6210461_6210941_+	hypothetical protein	NA	NA	NA	NA
WP_012166254.1\|6210954_6211620_+	hypothetical protein	NA	NA	NA	NA
WP_012166256.1\|6212288_6213656_+	MATE family efflux transporter	NA	NA	NA	NA
WP_012166257.1\|6213970_6214471_-	DNA starvation/stationary phase protection protein Dps	NA	NA	NA	NA
WP_049783800.1\|6214734_6215625_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041660651.1\|6215756_6216707_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012166261.1\|6217903_6219268_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012166262.1\|6219267_6222531_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	3.9e-43	20.9
WP_041660653.1\|6222642_6222840_+	hypothetical protein	NA	NA	NA	NA
WP_012166264.1\|6222932_6223739_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_012166265.1\|6223795_6224473_+	NADPH-dependent F420 reductase	NA	NA	NA	NA
WP_012166266.1\|6224569_6225313_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.5e-22	31.9
WP_012166267.1\|6225518_6226403_+	NmrA family NAD(P)-binding protein	NA	NA	NA	NA
WP_012166268.1\|6226417_6227434_+	NmrA/HSCARG family protein	A0A1V0SLC2	Klosneuvirus	5.5e-20	29.3
WP_012166269.1\|6227581_6228265_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012166270.1\|6228304_6228934_+	NADPH-dependent F420 reductase	NA	NA	NA	NA
WP_012166271.1\|6229055_6230480_+	cation:proton antiporter	NA	NA	NA	NA
WP_012166272.1\|6230520_6231144_+	GUN4 domain-containing protein	NA	NA	NA	NA
WP_012166273.1\|6231220_6231628_+	VOC family protein	NA	NA	NA	NA
WP_187152910.1\|6231812_6232469_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.6e-31	35.6
WP_012166275.1\|6232371_6234108_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_187152911.1\|6234261_6234621_+	hypothetical protein	NA	NA	NA	NA
WP_012166277.1\|6234617_6235019_+	hypothetical protein	NA	NA	NA	NA
WP_012166278.1\|6235008_6235695_+	hypothetical protein	NA	NA	NA	NA
WP_012166279.1\|6235703_6235970_+	hypothetical protein	NA	NA	NA	NA
WP_012166282.1\|6236636_6236861_+	hypothetical protein	NA	NA	NA	NA
WP_012166283.1\|6237083_6237626_+	hypothetical protein	NA	NA	NA	NA
WP_148215715.1\|6238004_6239002_-\|transposase	IS630-like element ISAcma34 family transposase	NA	NA	NA	NA
6245910:6245924	attR	NA	NA	NA	NA

DBSCAN-SWA_16

6249470 : 6280808

Bacillus_phage(20.0%)

integrase,transposase

attL 6263505:6263564|attR 6280848:6282233

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012166301.1\|6249470_6252500_-\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	1.6e-59	22.4
WP_012166302.1\|6252504_6252978_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_012166303.1\|6253058_6253955_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_148215982.1\|6254198_6254609_+	hypothetical protein	NA	NA	NA	NA
WP_012166305.1\|6254700_6255081_+	hypothetical protein	NA	NA	NA	NA
WP_012167083.1\|6255154_6255487_+	hypothetical protein	NA	NA	NA	NA
WP_012166308.1\|6255519_6255930_+	DUF4326 domain-containing protein	NA	NA	NA	NA
WP_012166309.1\|6255929_6256316_+	hypothetical protein	NA	NA	NA	NA
WP_012166310.1\|6256348_6256573_-	hypothetical protein	NA	NA	NA	NA
WP_012166311.1\|6257186_6257498_+	hypothetical protein	NA	NA	NA	NA
WP_012166313.1\|6258480_6259068_+	hypothetical protein	NA	NA	NA	NA
WP_012166314.1\|6259346_6260291_+	cation transporter	NA	NA	NA	NA
WP_012166315.1\|6260481_6261270_-	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_012166316.1\|6261507_6261717_+	hypothetical protein	NA	NA	NA	NA
WP_041660659.1\|6261915_6263034_-	hypothetical protein	NA	NA	NA	NA
6263505:6263564	attL	NA	NA	NA	NA
WP_012160803.1\|6263603_6264848_+\|transposase	ISL3-like element ISAcma10 family transposase	A0A2D1GQC1	Lysinibacillus_phage	5.8e-24	26.1
WP_187152964.1\|6265029_6265206_-	hypothetical protein	NA	NA	NA	NA
WP_012166319.1\|6265468_6266653_+	diguanylate cyclase	G3MA91	Bacillus_virus	8.1e-15	31.6
WP_012166320.1\|6266955_6268629_-	hypothetical protein	NA	NA	NA	NA
WP_012166321.1\|6268884_6269733_-	DUF1350 family protein	NA	NA	NA	NA
WP_071819974.1\|6270234_6270486_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	1.1e-09	46.4
WP_041660661.1\|6270661_6271024_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012166325.1\|6271347_6272028_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-30	34.5
WP_012166326.1\|6271999_6273463_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	1.5e-18	31.0
WP_012166327.1\|6273459_6273885_-	DoxX family protein	A0A1V0SKA4	Klosneuvirus	2.4e-06	33.6
WP_012166328.1\|6273940_6275242_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012166329.1\|6275511_6276249_-	SDR family oxidoreductase	A0A2P0VP75	Tetraselmis_virus	1.0e-07	28.2
WP_049783801.1\|6276434_6276815_-	DUF5367 domain-containing protein	NA	NA	NA	NA
WP_012166331.1\|6276954_6277962_-\|integrase	tyrosine-type recombinase/integrase	R9TMP3	Vibrio_phage	3.8e-05	25.5
WP_012166332.1\|6278207_6279311_+	potassium channel protein	NA	NA	NA	NA
WP_012160803.1\|6279563_6280808_-\|transposase	ISL3-like element ISAcma10 family transposase	A0A2D1GQC1	Lysinibacillus_phage	5.8e-24	26.1
6280848:6282233	attR	NA	NA	NA	NA

DBSCAN-SWA_17

6306377 : 6379093

Enterobacteria_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012166356.1\|6306377_6308114_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_148215848.1\|6308016_6308673_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.5e-31	36.1
WP_041660666.1\|6309132_6313563_-	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
WP_083776781.1\|6313971_6314181_-	ATP-binding protein	NA	NA	NA	NA
WP_012162310.1\|6315479_6316898_+\|transposase	IS4-like element ISAcma16 family transposase	NA	NA	NA	NA
WP_012166359.1\|6316881_6317022_-	hypothetical protein	NA	NA	NA	NA
WP_012166360.1\|6317111_6317345_-	hypothetical protein	NA	NA	NA	NA
WP_148215849.1\|6318001_6319429_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_071819977.1\|6319647_6319866_+	hypothetical protein	NA	NA	NA	NA
WP_083776783.1\|6320735_6321842_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_041660667.1\|6322536_6323913_+	hypothetical protein	NA	NA	NA	NA
WP_012166366.1\|6323995_6325555_+	hypothetical protein	NA	NA	NA	NA
WP_012166367.1\|6325810_6327133_-	hypothetical protein	NA	NA	NA	NA
WP_148215850.1\|6327184_6327607_-	hypothetical protein	NA	NA	NA	NA
WP_049783804.1\|6328204_6331066_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_041661109.1\|6331270_6331891_+	hypothetical protein	NA	NA	NA	NA
WP_012166372.1\|6332102_6332354_-	hypothetical protein	NA	NA	NA	NA
WP_012161398.1\|6332423_6333224_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012166373.1\|6333291_6334194_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012166374.1\|6334318_6335563_-\|transposase	ISL3-like element ISAcma10 family transposase	A0A2D1GQC1	Lysinibacillus_phage	2.6e-24	26.1
WP_012160833.1\|6335817_6336927_+\|transposase	IS630-like element ISAcma14 family transposase	NA	NA	NA	NA
WP_012160919.1\|6336949_6338260_-\|transposase	IS701-like element ISAcma8 family transposase	NA	NA	NA	NA
WP_012166376.1\|6338216_6339116_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012166377.1\|6339476_6339962_+	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_012166379.1\|6341279_6341750_-	FHA domain-containing protein	NA	NA	NA	NA
WP_012166380.1\|6342543_6343023_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_012166382.1\|6343353_6344313_-	hypothetical protein	NA	NA	NA	NA
WP_187152912.1\|6344729_6345059_-	hypothetical protein	NA	NA	NA	NA
WP_012161283.1\|6345100_6345298_+	hypothetical protein	NA	NA	NA	NA
WP_012164215.1\|6345294_6346512_+\|transposase	IS4-like element ISAcma18 family transposase	NA	NA	NA	NA
WP_012161013.1\|6346648_6347578_-\|transposase	IS5-like element ISAcma6 family transposase	Q1MVF0	Enterobacteria_phage	2.8e-63	42.0
WP_012166385.1\|6347766_6347976_-	hypothetical protein	NA	NA	NA	NA
WP_076611790.1\|6347960_6348957_-\|transposase	IS1-like element ISAcma40 family transposase	NA	NA	NA	NA
WP_049783805.1\|6349033_6349600_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_012166390.1\|6351948_6352530_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012166391.1\|6352547_6358490_-	GAF domain-containing protein	NA	NA	NA	NA
WP_083776751.1\|6358634_6359384_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012166395.1\|6360277_6361282_-\|transposase	IS630-like element ISAcma15 family transposase	NA	NA	NA	NA
WP_012166397.1\|6362314_6363076_+	hypothetical protein	NA	NA	NA	NA
WP_041660669.1\|6363636_6364149_+	hypothetical protein	NA	NA	NA	NA
WP_049783806.1\|6364431_6365286_+	serine/threonine protein kinase	A0A2R8FDX7	Brazilian_cedratvirus	5.6e-10	35.7
WP_012166403.1\|6365911_6366805_-	GUN4 domain-containing protein	NA	NA	NA	NA
WP_012166404.1\|6366915_6368292_-	DUF1254 domain-containing protein	M1I2Z8	Paramecium_bursaria_Chlorella_virus	1.2e-70	37.1
WP_012166405.1\|6368525_6369161_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_012166407.1\|6370242_6371514_+	hypothetical protein	NA	NA	NA	NA
WP_012166408.1\|6371674_6371815_-	hypothetical protein	NA	NA	NA	NA
WP_041660671.1\|6372177_6372549_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071819979.1\|6372702_6372870_+	metallothionein	NA	NA	NA	NA
WP_041660672.1\|6373565_6376322_+	GAF domain-containing hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.7e-39	31.2
WP_012166415.1\|6376346_6376817_+	response regulator	W8CYM9	Bacillus_phage	1.4e-10	29.5
WP_012166416.1\|6376867_6377518_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_083776752.1\|6377782_6378262_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_012161398.1\|6378292_6379093_-\|transposase	IS5 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NC_009930

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7388 : 56090

Enterobacteria_phage(25.0%)

transposase,integrase

attL 10508:10522|attR 36063:36077

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012168073.1\|7388_9044_-\|transposase	IS1182-like element ISAcma46 family transposase	NA	NA	NA	NA
WP_012168072.1\|9299_9695_+	hypothetical protein	NA	NA	NA	NA
WP_012161013.1\|9735_10665_-\|transposase	IS5-like element ISAcma6 family transposase	Q1MVF0	Enterobacteria_phage	2.8e-63	42.0
10508:10522	attL	NA	NA	NA	NA
WP_012168070.1\|11190_11613_-	hypothetical protein	NA	NA	NA	NA
WP_012168069.1\|11752_12043_-	hypothetical protein	NA	NA	NA	NA
WP_012168067.1\|12119_12761_-	ParA family protein	A0A2P1A2G0	Mycobacterium_phage	2.1e-09	29.3
WP_049783902.1\|13435_14008_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	1.4e-33	43.3
WP_148216093.1\|15611_15851_+	hypothetical protein	NA	NA	NA	NA
WP_012168061.1\|16135_16618_+	hypothetical protein	NA	NA	NA	NA
WP_012168060.1\|16705_17104_+	hypothetical protein	NA	NA	NA	NA
WP_012168059.1\|17406_17733_+	hypothetical protein	NA	NA	NA	NA
WP_012168058.1\|18026_18764_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_012168057.1\|18780_19665_+	hypothetical protein	NA	NA	NA	NA
WP_148216095.1\|20931_23346_-	hypothetical protein	NA	NA	NA	NA
WP_012168052.1\|25026_25320_-	hypothetical protein	NA	NA	NA	NA
WP_012168051.1\|25380_25641_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012168050.1\|25830_26142_+	hypothetical protein	NA	NA	NA	NA
WP_012168049.1\|26210_26537_+	hypothetical protein	NA	NA	NA	NA
WP_012168048.1\|26600_26978_+	hypothetical protein	NA	NA	NA	NA
WP_148216096.1\|27058_27391_+	hypothetical protein	NA	NA	NA	NA
WP_049783903.1\|27390_28284_+	KilA-N domain-containing protein	G9BWG7	Planktothrix_phage	3.0e-22	34.2
WP_187152998.1\|28507_28693_+	hypothetical protein	NA	NA	NA	NA
WP_012168044.1\|28682_29138_+	hypothetical protein	NA	NA	NA	NA
WP_012168043.1\|29317_30124_+	sigma-70 family RNA polymerase sigma factor	G8CLC7	Synechococcus_phage	7.6e-41	37.5
WP_012168042.1\|30165_32028_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_012160833.1\|32244_33354_+\|transposase	IS630-like element ISAcma14 family transposase	NA	NA	NA	NA
WP_041661430.1\|33583_33814_+	hypothetical protein	NA	NA	NA	NA
WP_012168039.1\|33806_33968_+	hypothetical protein	NA	NA	NA	NA
WP_012168038.1\|34076_34535_+	hypothetical protein	NA	NA	NA	NA
WP_012168037.1\|34706_34955_+	hypothetical protein	NA	NA	NA	NA
WP_012168036.1\|35084_35276_+	hypothetical protein	NA	NA	NA	NA
WP_012168035.1\|35341_35644_-	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	1.0e-06	39.5
WP_012168034.1\|35650_35989_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012168032.1\|36359_36773_+	hypothetical protein	NA	NA	NA	NA
36063:36077	attR	NA	NA	NA	NA
WP_071820030.1\|36969_37428_-	hypothetical protein	NA	NA	NA	NA
WP_012168028.1\|37737_37911_-	hypothetical protein	NA	NA	NA	NA
WP_012168027.1\|38054_38270_-	hypothetical protein	NA	NA	NA	NA
WP_012168025.1\|38637_38799_+	hypothetical protein	NA	NA	NA	NA
WP_012168024.1\|38755_39643_+	hypothetical protein	NA	NA	NA	NA
WP_012168020.1\|40287_40764_-	hypothetical protein	NA	NA	NA	NA
WP_012168017.1\|41712_43686_-	NACHT domain-containing protein	NA	NA	NA	NA
WP_012168016.1\|43699_44134_-	hypothetical protein	NA	NA	NA	NA
WP_012168015.1\|44543_44696_-	hypothetical protein	NA	NA	NA	NA
WP_148216104.1\|44737_45262_-	hypothetical protein	NA	NA	NA	NA
WP_012168013.1\|45350_45746_-	hypothetical protein	NA	NA	NA	NA
WP_012168012.1\|45755_46100_+	hypothetical protein	NA	NA	NA	NA
WP_148216098.1\|46188_46527_+	hypothetical protein	NA	NA	NA	NA
WP_012168010.1\|46761_48735_+	relaxase domain-containing protein	NA	NA	NA	NA
WP_012168009.1\|49115_49535_+	hypothetical protein	NA	NA	NA	NA
WP_012168008.1\|49597_49936_-	hypothetical protein	NA	NA	NA	NA
WP_012168007.1\|49925_51593_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_012168006.1\|51596_52049_-	hypothetical protein	NA	NA	NA	NA
WP_012168005.1\|52114_52447_-	hypothetical protein	NA	NA	NA	NA
WP_012168004.1\|52646_54383_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_148216099.1\|54285_54825_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.5e-19	37.0
WP_012160803.1\|54845_56090_+\|transposase	ISL3-like element ISAcma10 family transposase	A0A2D1GQC1	Lysinibacillus_phage	5.8e-24	26.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

8. NC_009928

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

65982 : 108265

Bacillus_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148216055.1\|65982_66978_+\|transposase	IS1 family transposase	NA	NA	NA	NA
WP_071820017.1\|67173_67452_+	cell division protein SepF	NA	NA	NA	NA
WP_012167342.1\|67479_68097_+	hypothetical protein	NA	NA	NA	NA
WP_187152968.1\|68416_69073_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.0e-31	36.1
WP_012167343.1\|68975_70712_-\|transposase	IS21-like element ISAcma26 family transposase	NA	NA	NA	NA
WP_012167344.1\|71091_71457_+	hypothetical protein	NA	NA	NA	NA
WP_148216056.1\|71577_71823_-	hypothetical protein	NA	NA	NA	NA
WP_012167350.1\|72751_73027_-	RNA-binding protein	NA	NA	NA	NA
WP_041661312.1\|73269_74109_-	prohibitin family protein	NA	NA	NA	NA
WP_012167352.1\|74219_75284_-\|transposase	IS4-like element ISAcma48 family transposase	NA	NA	NA	NA
WP_012167354.1\|75948_77679_+\|transposase	IS21-like element ISAcma50 family transposase	NA	NA	NA	NA
WP_187152990.1\|77575_78223_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.2e-27	35.1
WP_148216058.1\|78541_79689_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.2e-25	33.1
WP_012167359.1\|81824_82574_-	2-phosphosulfolactate phosphatase family protein	NA	NA	NA	NA
WP_012167360.1\|82751_83498_+	response regulator	W8CYM9	Bacillus_phage	8.3e-42	38.8
WP_012167361.1\|83561_83924_+	hypothetical protein	NA	NA	NA	NA
WP_012167364.1\|84437_85217_-	hypothetical protein	NA	NA	NA	NA
WP_012167366.1\|85814_86519_+	phycobilisome rod-core linker polypeptide	NA	NA	NA	NA
WP_012167367.1\|86785_87190_-	phycobilisome linker polypeptide	NA	NA	NA	NA
WP_012167368.1\|87204_88077_-	phycobilisome linker polypeptide	NA	NA	NA	NA
WP_012167371.1\|88596_89085_-	phycocyanin subunit alpha	NA	NA	NA	NA
WP_012167372.1\|89169_89688_-	phycocyanin subunit beta	NA	NA	NA	NA
WP_012167373.1\|90315_90804_-	phycocyanin subunit alpha	NA	NA	NA	NA
WP_012167374.1\|90872_91391_-	phycocyanin subunit beta	NA	NA	NA	NA
WP_012167375.1\|91703_92417_-	response regulator	W8CYM9	Bacillus_phage	8.2e-39	36.4
WP_012167376.1\|92762_93581_-	phycobilisome rod-core linker polypeptide	NA	NA	NA	NA
WP_012167379.1\|95612_96647_+	chlorophyll a/b binding light-harvesting protein	NA	NA	NA	NA
WP_012167381.1\|97175_98336_+	ferrochelatase	NA	NA	NA	NA
WP_012167382.1\|98497_99214_+	heme oxygenase (biliverdin-producing)	Q58M64	Prochlorococcus_phage	2.3e-57	50.0
WP_012167384.1\|99515_99926_+	hypothetical protein	NA	NA	NA	NA
WP_012167388.1\|101251_101812_+	hypothetical protein	A0A0E3FMR0	Synechococcus_phage	1.3e-18	35.3
WP_012167391.1\|103434_104259_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_012167392.1\|104759_105353_+	chromophore lyase CpcT/CpeT	NA	NA	NA	NA
WP_012167393.1\|105762_106686_+	hypothetical protein	NA	NA	NA	NA
WP_012167394.1\|106700_107144_+	hypothetical protein	NA	NA	NA	NA
WP_148216059.1\|107166_108265_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

113477 : 179790

Synechococcus_phage(40.0%)

transposase,integrase

attL 109643:109662|attR 150904:150923

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
109643:109662	attL	NA	NA	NA	NA
WP_012167405.1\|113477_114524_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012167407.1\|115522_115741_-	hypothetical protein	NA	NA	NA	NA
WP_012167410.1\|116351_116663_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	C7BUZ5	Synechococcus_phage	9.5e-16	45.9
WP_012167411.1\|116740_117013_-	DUF4253 domain-containing protein	NA	NA	NA	NA
WP_012167412.1\|117109_118771_-\|transposase	IS5-like element ISAcma45 family transposase	NA	NA	NA	NA
WP_012167417.1\|120289_121258_+	sodium-dependent bicarbonate transport family permease	NA	NA	NA	NA
WP_012167418.1\|121262_121568_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_187152991.1\|121562_121715_-	hypothetical protein	NA	NA	NA	NA
WP_012167419.1\|121711_122089_-	hypothetical protein	A0A1D8EX67	Mycobacterium_phage	7.5e-07	31.8
WP_012167420.1\|122088_122487_-	hypothetical protein	NA	NA	NA	NA
WP_012167421.1\|122538_122775_+	hypothetical protein	NA	NA	NA	NA
WP_049783892.1\|122795_123398_-\|transposase	transposase	NA	NA	NA	NA
WP_049783886.1\|123507_124044_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_148216060.1\|124755_125166_-	hypothetical protein	NA	NA	NA	NA
WP_012167427.1\|125530_125914_+	hypothetical protein	NA	NA	NA	NA
WP_012167428.1\|125986_126400_+	hypothetical protein	NA	NA	NA	NA
WP_012167429.1\|126643_126823_-	hypothetical protein	NA	NA	NA	NA
WP_076611717.1\|126991_127874_+\|transposase	IS630-like element ISAcma31 family transposase	NA	NA	NA	NA
WP_012167431.1\|128480_128879_-	DUF1622 domain-containing protein	NA	NA	NA	NA
WP_148216061.1\|129693_130572_-	DUF2182 domain-containing protein	NA	NA	NA	NA
WP_148216062.1\|130519_131158_-	DUF1326 domain-containing protein	NA	NA	NA	NA
WP_012167436.1\|131543_132722_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_012167437.1\|132748_133909_+	hypothetical protein	NA	NA	NA	NA
WP_012167439.1\|134161_134347_-	hypothetical protein	NA	NA	NA	NA
WP_148216072.1\|134652_134910_-	hypothetical protein	NA	NA	NA	NA
WP_012167441.1\|136908_137754_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_063710581.1\|138350_141296_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012167444.1\|142162_142795_+	hypothetical protein	NA	NA	NA	NA
WP_012167445.1\|142952_144125_+	response regulator	NA	NA	NA	NA
WP_012167450.1\|145988_146702_+	phycocyanobilin:ferredoxin oxidoreductase	A0A0E3HIH2	Synechococcus_phage	1.0e-33	41.1
WP_012167373.1\|148041_148530_-	phycocyanin subunit alpha	NA	NA	NA	NA
WP_012167374.1\|148598_149117_-	phycocyanin subunit beta	NA	NA	NA	NA
WP_012167461.1\|153192_153459_+\|transposase	transposase	NA	NA	NA	NA
150904:150923	attR	NA	NA	NA	NA
WP_012167463.1\|154224_155040_-	phycobilisome rod-core linker polypeptide	NA	NA	NA	NA
WP_012167381.1\|156083_157244_+	ferrochelatase	NA	NA	NA	NA
WP_012167382.1\|157405_158122_+	heme oxygenase (biliverdin-producing)	Q58M64	Prochlorococcus_phage	2.3e-57	50.0
WP_012167453.1\|158425_158722_+\|transposase	transposase	NA	NA	NA	NA
WP_148216073.1\|158717_158972_+\|transposase	transposase	NA	NA	NA	NA
WP_148216063.1\|159167_160254_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.1e-21	27.5
WP_012167372.1\|161039_161558_+	phycocyanin subunit beta	NA	NA	NA	NA
WP_012167371.1\|161642_162131_+	phycocyanin subunit alpha	NA	NA	NA	NA
WP_012167368.1\|162529_163402_+	phycobilisome linker polypeptide	NA	NA	NA	NA
WP_012167367.1\|163416_163821_+	phycobilisome linker polypeptide	NA	NA	NA	NA
WP_012167468.1\|164392_165019_+	phycobiliprotein lyase	NA	NA	NA	NA
WP_012167470.1\|167046_167250_-	NblA/ycf18 family protein	NA	NA	NA	NA
WP_071820022.1\|169125_169839_-\|transposase	transposase	NA	NA	NA	NA
WP_012167481.1\|172142_172358_-	hypothetical protein	NA	NA	NA	NA
WP_012167485.1\|173960_174947_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_012167487.1\|175079_175490_+	MAPEG family protein	NA	NA	NA	NA
WP_012167488.1\|175500_176187_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_012167489.1\|176365_177295_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012167490.1\|177310_178165_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_187152987.1\|178322_178631_-	hypothetical protein	NA	NA	NA	NA
WP_076611269.1\|178794_179790_+\|transposase	IS1-like element ISAcma36 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

9. NC_009932

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_009932_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009932_1

59551-59687

Orphan

Consensus_repeat	Method
TAAGGTTTTCGGACCCTCTGGTTGTTTGATCGCGGTTAGAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009932_1

>merge|NC_009932|1|59551-59687|CRISPRCasFinder
TAAGGTTTTCGGACCCTCTGGTTGTTTGATCGCGGTTAGAGGGTCTTTGGTTTTTTCATCAAAGGCTAACGGTGCAGTTAGCCTCAATCGGTGTTTAAGGTTTCGGACCCTCTGGTTGTTTGATCGCGGTTAGAGGG

>NC_009932|1|1|59551-59687|CRISPRCasFinder
TAAGGTTTTCGGACCCTCTGGTTGTTTGATCGCGGTTAGAGGG	TCTTTGGTTTTTTCATCAAAGGCTAACGGTGCAGTTAGCCTCAATCGGTGT
TTAAGGTTTCGGACCCTCTGGTTGTTTGATCGCGGTTAGAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009932.1\|WP_012168294.1\|46574_47561_-\|hypothetical-protein	unknown	unknown	unknown
NC_009932.1\|WP_012168290.1\|41566_43381_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|273292
NC_009932.1\|WP_041661512.1\|65510_66656_+\|hypothetical-protein	unknown	unknown	unknown
NC_009932.1\|WP_012166590.1\|47868_49326_+\|SLBB-domain-containing-protein	unknown	unknown	gnl\|CDD\|224512
NC_009932.1\|WP_012168306.1\|60765_61629_+\|hypothetical-protein	unknown	unknown	unknown
NC_009932.1\|WP_012168303.1\|58247_59519_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274108
NC_009932.1\|WP_012160919.1\|68922_70233_-\|IS701-like-element-ISAcma8-family-transposase	unknown	unknown	gnl\|CDD\|227946
NC_009932.1\|WP_187153006.1\|52368_53514_+\|lamin-tail-domain-containing-protein	unknown	unknown	gnl\|CDD\|197338
NC_009932.1\|WP_148216138.1\|60468_60705_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379188
NC_009932.1\|WP_012168312.1\|68025_68505_+\|hypothetical-protein	unknown	unknown	unknown
NC_009932.1\|WP_012168292.1\|44109_45612_+\|sodium:solute-symporter-family-protein	unknown	unknown	gnl\|CDD\|271368
NC_009932.1\|WP_012168293.1\|45663_46284_-\|hypothetical-protein	unknown	unknown	unknown
NC_009932.1\|WP_012168308.1\|62381_65507_+\|hypothetical-protein	unknown	unknown	unknown
NC_009932.1\|WP_041661511.1\|53965_57721_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226809
NC_009932.1\|WP_012168313.1\|68497_68926_+\|hypothetical-protein	unknown	unknown	unknown
NC_009932.1\|WP_012168297.1\|51315_52026_+\|hypothetical-protein	unknown	unknown	unknown
NC_009932.1\|WP_148216139.1\|66681_67959_+\|hypothetical-protein	unknown	unknown	unknown
NC_009932.1\|WP_012166589.1\|49504_50977_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|375351
NC_009932.1\|WP_012168315.1\|70604_71981_+\|hypothetical-protein	unknown	unknown	unknown
NC_009932.1\|WP_012168307.1\|61713_62370_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_009932.1\|WP_012168292.1\|44109_45612_+\|sodium:solute-symporter-family-protein	gnl\|CDD\|271368	cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline cotransporter CHT and related proteins; solute-binding domain. Na+/choline co-transport by CHT is Cl- dependent. Human CHT (also called CHT1) is encoded by the SLC5A7 gene, and is expressed in the central nervous system. hCHT1-mediated choline uptake may be the rate-limiting step in acetylcholine synthesis, and essential for cholinergic transmission. Changes in this choline uptake in cortical neurons may contribute to Alzheimer's dementia. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	1.67991e-119
NC_009932.1\|WP_012168290.1\|41566_43381_+\|ammonium-transporter	gnl\|CDD\|273292	TIGR00836, Ammonium_transporter, ammonium transporter. The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf. [Transport and binding proteins, Cations and iron carrying compounds].	5.40772e-136
NC_009932.1\|WP_041661511.1\|53965_57721_-\|hypothetical-protein	gnl\|CDD\|226809	COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown].	0.000195425
NC_009932.1\|WP_012160919.1\|68922_70233_-\|IS701-like-element-ISAcma8-family-transposase	gnl\|CDD\|227946	COG5659, COG5659, FOG: Transposase [DNA replication, recombination, and repair].	4.30193e-89
NC_009932.1\|WP_012166590.1\|47868_49326_+\|SLBB-domain-containing-protein	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	2.66204e-28
NC_009932.1\|WP_012166589.1\|49504_50977_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|375351	pfam17815, PDZ_3, PDZ domain. This entry contains the second PDZ domain from plant peptidases such as Deg2. This domain is involved in cage assembly.	2.30994e-61
NC_009932.1\|WP_012168303.1\|58247_59519_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274108	TIGR02393, RNA_polymerase_sigma_factor_RpoD, RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc. [Transcription, Transcription factors].	5.65094e-32
NC_009932.1\|WP_148216138.1\|60468_60705_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	3.99659e-05
NC_009932.1\|WP_187153006.1\|52368_53514_+\|lamin-tail-domain-containing-protein	gnl\|CDD\|197338	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like. This subfamily includes Mycoplasma pulmonis MnuA, a membrane-associated nuclease related to Deoxyribonuclease 1 (DNase1 or DNase I, EC 3.1.21.1). The in vivo role of MnuA is as yet undetermined. This subfamily belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	1.42007e-23

>NC_009932.1|WP_012168303.1|58247_59519_-|sigma-70-family-RNA-polymerase-sigma-factor
MVYTNVFNSQSLETGPFSRKVQYPQIERAQAGDRRAEDRFIRKNQRLVFKEAKRYRGLVDWDDLVNAGTLGLSIAIQKFDLSRGFQFSTYAVKPIRTEIRQLICEQRGLSREITKHLKKIDEAEQDLELELERKPTLDELAERTGYSHRVITNAWNKARVVDTSSLNVLTGTEQGIECLDFVEDFEQLDSWDFAESINMKDYIAQLPDRESFIVRARRDGHSYREIGTMLKLSGERIRQLYQKALEYLKHLITYGSCLVRFPQPDKTQLIHPEGIEKPTVKRVDASRLGGKIGRAIQKIFKQTNKESHIHEPGELTNAQKHILVCRRRSSRGAANVAGHRLTSENQRCHQLERTQDDWRGHLGFSPVILNIILLPLALVSQSIRGLQDNDRPSERRSIMSSITSGVSKVIEGGYRKEHPRPPN
>NC_009932.1|WP_041661511.1|53965_57721_-|hypothetical-protein
MTSTPSLTLNSPHLGFGTPTRFTSKLIPFKRQNHCPICGSNDGRCSKGGDIILCLTETYDVGIINGYKFRKLSKDSNWGIWAPHTGDDNYNSINWQARKAIRDQQAKEERRQRIAKELPVGQRDHLYRQLLCDLSLCSMDRGDMDRRGMSSNEISGFGAVSVGQFQRVKDLSPDLPGVLPGGILNSQGGYLWPLYNVHDQIVALQLRKRNVHEDNRYIWLSSSTRRNPNGNGPHVNGEIPLAVYKSFGPYSRIALVEGTGVKPYLLSQRLQLPTIGAAGGLWASSPETLRETLTVLSKGAEQTPIITLYPDAGAVRNLNVFRQYQRVIRLLEEWGYAVEVAWWGQTYKENACDIDELTPVELAQIGFKPTWFFNSLGLEYELGQLFLKLNGLSDQATAVINKRYIELSDLGTIDPGSVVAIASMCGTGKTEMLKSLVGQVKGQVIMPGYRNNLLFNTEDRFTSKDANGNTLYNLIHLFRLNKEYQGNISMGFRSERSILLCFDSLLKIELDDIEPDSCIILDEADAALFHVLSGQTLGDRQNQILEHFHAIANRVLETRGNIILLEDSLSQIPIDYIKGITGGKYNTKIVVNEFKPDDNFPTKVFSGQTSQFLERILNAVANDERFIVVATSQEFLEKLERMISDVNPEFAKGILRHDRKTSERPENKFFQANPTEFVKDYQPTALFLSPTAESGVSIDEPRLIPYFSRVFCYASSNHARSVYQQLWRYRAKVTREIYVTRKAHIPDIPSIKSVEQVIMLQSKYGQDVAASIDLEQQLIHDQSPETAQQLAALKAYQQNPNNCHNVSFARYQTRSIASLLALRESLMLLLRDHGHPIEMEELRDRNADIVESFSKVRKQMEVETAVMLGTADGERFTVEQAIRVMGSSSATYKDTLDAKKVLLQDELPGVELTDEFIHQVCVEHRGRLKSATKLHWMSYHPEVAEELDRRNFMKQLNSQFVLTHRLTNNRIQVQLLRDLGVFDLVDTYNVTSADYEAYDKALEKGRQVQRQRQSLRLEVKGLSGQIREIVQEQKAIQAKLTALGRKAHPRKATLKGELEQLEQQKQGLKDQKLGLVERIEQQSQAFTQARYEQVEARMRMEILVMNEADQRLEDIKVKALEYRYQIYRHFRNVISEGQSAVAIVNKLIKRVAHELVKVGSEESVSLYVIRYSGNEAYKDQMLKAFQSKWNQRLEKNRPSCEICKKETDLITEMEKRTEIDEYGGGNDQEIGQWEGSDDGFSGGSELKLGCD
>NC_009932.1|WP_187153006.1|52368_53514_+|lamin-tail-domain-containing-protein
MFSDFVFADGCALAEELKVVTFNVESGNDTDPNMVARDMQAIPDVDLWGLSEVENQSAADTFLQAAGDSNFESILGTSGGSDRLQIIYDKSKLNKLNSSPMELTGIGGDRKPLVEEFEVISDNTKFLFAVNHFNRGSARKRQEQARKFRDWAGRQTLPVVAVGDYNFDFDISAMDGNPAFEIFFEEPVFSWARQTCLSSNTCPSTGTQCNECFDGLLDFIFLSGDAKKWSNQSEILFKGSSFCDNDPTGASDHFPVQAIIDLDGDFQPFQPNILKGPHIASLLPNPSGRDDTNESVTLVNTGTEAINLVNWILRDKDGNTLKLDELDTLFPRERKNILRDGRDLSLNNSCDTVELVDPAGEIVDSVSYIRPEEGEELEFIF
>NC_009932.1|WP_012168297.1|51315_52026_+|hypothetical-protein
MNKTTKITNLIIFSLIIGIIPGIIDLYILKCFTPQSAVAIPNTAGSLRPPKLVASDLPPGFREVPTPISSLIRGAISSTISDHFGSNEIQIRDLVTYMNLNQWTLIIGFVTPLNNENAVQMFDLGLEQPSALEKFVTGIKKSNYYLGSVNIVEQRVAPSLSQKIGQVSTGMAVIAKARNVSLFSEMVAFRRNNLGAMLIVGRLNDNIPLMTTSKLAQKFDSQLLNFQSYPHPSNQQ
>NC_009932.1|WP_012166589.1|49504_50977_-|trypsin-like-peptidase-domain-containing-protein
MVSCFIFKAGNTEPYNEQRIRGAIVKVYSVRNKPDYQKPWETVIKRSTGSGFIIADNKILTNAHVVADQTFVEVRRHGQAKRYRAQVVSVAHEVDLAILSVKNNAFFSGVTPLEFADLPEIRQEVAVYGFPTGGNALSTTRGIVSRIEHQFYTHSSEYFLAAQIDAAINSGNSGGPVLDGNGQIVGVAMQARKSADNIGYMVPVPVIRHFLQDLEDKTFNGFPGLGLVYQKMENPGMKRSYGISENLTGILVRHILSESPAEGFIRAGDVIHAIDGHAIADDGTVVFRQGDRTNFNYYIDIHQVGETVSIEFFRNSKLKTVMLTLNKQKKDFRLVPLEQYNELPRYFIFGGIVFSPLTKNLIKSWGINWSKTAPKELLIELSNWPSREKIEIVVATRVLGSEVNRGYHGIAGWIVKEVNGKKFKDFSEFCQLVTTSNSPFVAFKGARNFQIVIDKKEAEESLDEILKNYRIGAAYSEDLKILSAVGEPNS
>NC_009932.1|WP_012166590.1|47868_49326_+|SLBB-domain-containing-protein
MIRSLQTIAFITILSTMSPSLAMAEISPKEKLNSSIRSNSIAQNPNTQAGDTLINQQAYILGPGDEIQLTMFGQPNLFTTNYRVLVDGTVSLPLIGRVLVKGRSIGIAEREIAKRYIRFYRRPFITIVLVDARVVTLAISGEVRHPGTYPVESPTQIPTVTQLIQLAGGASQSADISQIKVRRPQENGKEQFISVNLLQLLQEGDLSQNLQLRDKDTVIIPTTTTVDFSNALLIRNASFSSDRSEPINIAIIGEVYRPGPHTIRPGSADVQEAGTLGNAKAASTELPTVTQAIQTAGGIKPEADIRQVKVIRRPHNGNPQEIIVNLWELLKAGDLSQDIALQAGDTIVVPKAVGLSAAELTELSTISFAPATIDVNVVGEVKRPGIIKIQPNTPLNTAMLAAGGFDDRRANKSKVKLIRLNPDGTVTQREIKIDLEQPLNEENNPALRNNDVVVVGRSGLTKVGDNLRNILAPITSSFGIFRILF
>NC_009932.1|WP_012168294.1|46574_47561_-|hypothetical-protein
MPGLQNILLEFYNYFGELPFIGVTLILVGLVSFRAIPRSTDLATSSAAGLVGLIWGNSQRTLVINSTTNLPELGIMLVSLFGLGRLGGIATPLGSNLSNVYLIFIVSPIVLICKWILIKNPNHIKNLMLLAKLEKQLILWHVFMSLLMFFFASFTYLILTGNVQFIQHSGANTELDIMSLVIAIIVSLCGVIVFLIFESKLKKRRPELFEDIDDTNFEASWSRFFLGVIMLCLSCYILNDLFAVWTELFQNHFVEFSLFPTIHYFIGSLISSLPEMSVAVGNYERLSSPDLNTALGSASQSCMTNLLIAGLGSVIALVLSMNGLLRRI
>NC_009932.1|WP_012168293.1|45663_46284_-|hypothetical-protein
MAPQLISLKPKPPAQPTLKTPTNIESNSAYSGKTAFPTIARKDDLPLKRKPSPDAGDDERKRESAPIHIHREPDFARRTQRGYTARHTTSRTQPPRVSRAFESKFNALERRQKNLIQQTKQKGQLEYLTVSQSSLGNFWITIEGSGKPFIKISFETPEFCFECALELENTFDVLQVIKLRPGETIERIEEMIGVWLDRERVCRVWG
>NC_009932.1|WP_012168292.1|44109_45612_+|sodium:solute-symporter-family-protein
MEHSVFSWGIIIFLLGTLGIGVWASQQIKGDSVNFLVAGRGLALPLAAATLMAQSVDSNATLGNTDLSAEFGFWAGAALPIGLSLCLFLTGTFLAKPMNRMGLITIPDFYRVKYGRRVELIASCIMSISFSFLLAGNLVAGGFMFQTFLGTSYVGGITLLATLVFAYTVSGGLFAVAYTDAMQILIALVGALGLLAFVLVNFGLDIAPGTGPLALEQLTSVGSGAAVNWASLLALGFGNMVAIDFMARIFAAESPETARRSCYVASAGTLIVGIPFSVIALSANSILEGANVVADGPVLFALLQNVVPPVLGLLVLVAILSASLSTADGAILGTSSVLAHNVFGIRHGGTHGRGGGDRLLLVTRLLSLVITLLGVFLGLRVPQTGVLLLLGFDLGFAGLVVPLLGGLFWSYSTRQGALACIFAGSTTRLILFALMPTMFGIENTLLYIPNSLFTSNFDGFPTLISPVVGFIAFVVVSKLTYKPIPVELERVKLREGVQAL
>NC_009932.1|WP_012168290.1|41566_43381_+|ammonium-transporter
MIDLLWMLLCTGLVFLMQAGFMCVESGLTRSKNSINVAVKNMADFGLSVALFWCFGYALMFGASQGGWLGGSRYFPSSESSPKLIVFFLYQAMFCGTATTIISGAVAERLQFVAYLIIASLVSSLIYPLFGHWAWNSLVENNTGGWLENLGFIDFAGSTVVHSVGAWVSLATLIIVGSRQGRFSDQGATQIQGSNLPFSVLGALLLWFGWIGFNGGSTLALNEQVPGIILNTMIAGIAGMVTAALLSWLQHRLLAVESLINGTLAGLVAITACCHVVATPLAFVVGSTGAAVALWVSYGLHRLRIDDAVDAVAVHGGAGAWGTLCVALFGQLSETGMNRASQLLVQLLGIGVCFAWAFGLSWLLLSAVNRFVPLRVSAEDERLGLNISEHHAKTDTYELFQVMDQQAKTSDLSLRVPVEPFTEVGHIATRYNQVIDSLARNHQESAETLAQIYMITAASAAVVENQLFDPHALDLDEICDRDDELGTLAQVLQQLVTAVHQRDQELATLKTQFSPENGQTSDLRIGSKESIGGAIVEILMVRFGAVSPQIIEEVAAISDANQLKILLKWAMATDSIVVFQAGIRRQLDTVSDKATLNKSQEILE
>NC_009932.1|WP_148216138.1|60468_60705_+|helix-turn-helix-domain-containing-protein
MAANKISVPQLAARLGISENAVINMRRSEMPRINGERLNQIIVALNAMRKKGKKRIQVQDLIVLTFSMDEADEARIHE
>NC_009932.1|WP_012168306.1|60765_61629_+|hypothetical-protein
MLKTTLLSLGLLAITSVSALANPATIPIDQAFKQTQKLEVSDVDHLLDFTDTRYRVIKAFPSNPQQLRALSLSRNDHQQLLLKWTPNGTAKKASVFLRVMGPGGEQTITLLVKRSGNEPDNIRTAFVPSQTVSKDAVIGEVSQVSIKPTVAPIPTQLIRPNRTTQNPPKTAQPVKPPLTLTHPKSPPVIKLRSSPKPILQIAKVSTTGRPLIDRSTLDNKALANYLIRGLHTPKGRKQANRHHDHYWFAQSMARYLKRGVSIDKALRWSRLPEKTFNDLLGHGGVSR
>NC_009932.1|WP_012168307.1|61713_62370_+|hypothetical-protein
MLSPCLQTARHYAHKHGPPWSAPLLCILLTLCPFILPLPPGTQIAGLEIMAMVWSTALFLHLYQTLNIQTKLGLYLFFSGMIALTPSMVKAQNVGNAPSSACNSGFFLIGPMLGAVDTSLGWFLGGVLAYSLCAFMIALIIVFFLVVIVGLVMAGAESHNSKRTLFEVLSQYLNVIITMMVIASLVTVFNLQLSNNGNAAPIPVGGQNQPQGATSVLN
>NC_009932.1|WP_012168308.1|62381_65507_+|hypothetical-protein
MNQTEQIEKELRYGKINPYIGPTQFQLLSGQQIITLAASGCICFILGFSIGWFMAAFLWLGIFVLTVLALGKDYSRIFARMSKQRRYYSDRPNYQVKAGIPLMVIELPEPFKLSQLFRRQTKQKTLKKIEPEFDLRAYGEMLLGEDIGFYLVHQDKQDRAMVIFGFTLQGIDPTLSEQEAMDWLQAIVMALQKIPGIELKFFWDVEGSADQVLLHQHDLVTHHDLDPLSEKLIKSEAQVAVDLAADGKLVHSVIRVYAKYRLSLADDYAVKEDRLDKLLAHTQPLVGTFQEYLNPQPEGFSSKQAWEKVLDRAYQAGYIPTAKALTQMGVKPQPMTKEDLWAIDWEDTHAEPADPCPQSITYSEAGLSPFSENQPLPYHILGELFSPERGLPAVPTPYLYTLYHPIKNQWAALVKINQLSTYNKIDNFLSIGYMKFLLQALEGFHGYRLISEITQIEPDSRLKLVNSAIKERNRKAIDAQLLHSTRNVQAEADVNELVDASRELSSGRWPLKVSLGIWVYRKDKASLTAAVQDLIRRLPTSKTEQVSNHLMTHWISSHPFHWQSLFSKPQLRREEYQCNQGVPLMPLVHPQTIDQQGIPFVSRGVAIPVHLNTALKKNLIAIFGPMGVGKSVLMNRMILENIIHRIFTVVIDVPPGNGKSTYQPFMIQLQRIGVSAAYFDVKSHIINGLDEIDTSWAGDLLSVQLLKKIKQNHLSLLRALVLGDDLDHPLYKTIKSVLALSYQDWRALADIDQRYRIAKAAAFGSEDSKRMPILQDFVDYFPQWVKQYKQDKDCEDLELQAIAMIRTELEAVLTTDLGASINGINTFNFDLQTLVIGLTDLQDPQESVIYSMAAINLMELQSFRYPRSAIFGDEISTTFKYRSISIRFAETCTRGRKEAKNVVIAGTEENTLVQSEGGRDILSNLDAVFYGHCNPTAVENAAKHLRLKPEILSKYVRAEYAPNLAELCTSWYLRKGNQHYELLFYTSALMIALVCTQPEETAARDRILALYPDNPLQGYIKFGHLLKRAYKLNLPLSLIGA
>NC_009932.1|WP_041661512.1|65510_66656_+|hypothetical-protein
MNRKQAVLFSLIIVFSSPQLTQAQVFSDDITLPTNAPTFPSGVPNTTGDVSVTQDNPFDDSPKPNFLKDIFLGTSNYRPIHSSTLKLFDILGKAQKGLQTYKNVKKVYDGIRGKNANSITDGVFNVLEQYGIIDPQKATTASNRSTPILIGQGNQGPAYATAGSIGALELEPKEPYEWRVKALNENIVYKNAIQKTGDFIYSPEAQEILKVQDQVAADARDAAAAAAQGELESVLASTQVKDQSIYASTVVGEYGTSAQSAKSTQAVNKLETKQNTEIANILAGNAFQLNAINESMVRNTSALGNIVTTQSILVDKQTVSQYLDAAQLRQSGQIFTTLNNQYSYEKRKDMYRHLAAADTSNLLHFPGLVEPQPNLSGQTQP
>NC_009932.1|WP_148216139.1|66681_67959_+|hypothetical-protein
MLIVLHMASHAHADFAEDLISDLEPSVAHDAFWDDLWNATFDRSTVISGDTRRIAFGSVSTVVRWVTLIALFVVLLHYGSGMMFSGTSLRKGNEFTIKSVFPVVIILALLANQFAGVHAVGLFVNQARLGVMGEAYAQTEFATTFRSAIKDAYLSEKYRESLAFRAKQCNLIETPITTIPSLEEPTNPETPLTDEQRQYYKKLQCIQSMVTYIQSLQAQVAAECEKGCVGTNVAIVKDLKKYGVDGVPGVVAENLDIFVIPIQKLGELAADGARHGAQETYRLIFRAIQWAWTSFLNMGFYLTAVGAPITYAISLMPTKRHFLFDLNLFALLMFSLAEFANIFCIGIVALMLQRPTLVDLGGYIFPLTYGLLAPIVSGSIFLGGFKAAASFRGGALGVASAAGGIAGGIATSVMISARNRREQYY
>NC_009932.1|WP_012168312.1|68025_68505_+|hypothetical-protein
MPLYPTIAVVFIVFAVLLIIIRGVFADLTPLGGLMACTVLTLFAGYHRIFAGADQLAGVDSFFTLGFGLIICQLFVPDFRFWWSDFRFIYGMTVLFYFAFCWTFDHVYILWFWFTGFVLLLLAVQLLFSAVSSGGRPPLHPDLDKDFMLYEDEWLFDDD
>NC_009932.1|WP_012168313.1|68497_68926_+|hypothetical-protein
MTKKISRFLPLLVVSALLLNILVCFSWFTQGARAQAPSQVYIQTDSGLVVKGQPVDPLYRSDEVVMRFAQEFVSVAYTWPMNGEGHREGKLIYPLPMYTQAFKIHPDIRSQWLGRQHVAYAKAKDPFANYVGQSHHTPLLSL
>NC_009932.1|WP_012160919.1|68922_70233_-|IS701-like-element-ISAcma8-family-transposase
MSASRSPEPTIGFVDEYCQLFAELFPQVRSYEAFKHLHLGMISDIKRKSLPAIARAVGLENHQSLHHFLSESPWVASHLSDKRLDIILKILDGRRLILLIDETGDCKKGKSTDYVKRQYIGNVGKKENGIVAVTAYGLFQGMILPLSFEVYKPRERLKEEDEYLSKPQIAAGMIRQLQGMGFCFELVLADSLYGEAQTNFVNVLEELKLPYILAIRSNHAVWLPAEQAVFAEPWQSFERTFSNGTTETRYRQEIIYGQRHHQKRYWLLTTDPQTLPENSTSYVMAAAPEIKLDEIGDCYGFRTWIEYGLKQSKDTLGWADFRMTHYEQIEKWWEIVMSAFLMVSLFADVFNDSCPVAHQHFAQHPWWDNQNGWKNLLNNVRLIIQPLISWNLLKRWLEVFPSRALKKGFEQLTSKMEAFCCPLVRKLLKHPDFLSV
>NC_009932.1|WP_012168315.1|70604_71981_+|hypothetical-protein
MPTDKRQVEEAKAILLDDPELNELLEENKISEGRPINDLEKMVDPGDKVKHPYYLQPWFRIGSIAIPLIIMGFVGYKIWGPKPQKVMALGDKDKQIIELTEKLQQSELEKAQLTQDNMGLTQAAELEPFKQQQKQLKQQQLKQQAQKQQAKQKKPVPVRGKPIQRQNTVSIPRRLYRNPTPKRSYTPAKPSPSLLANSKPSGPSLSECVGYVERNINVPGCNRYQISQKPQSSSQTASIGKNPTIPRPAYTPRPQTKPVKLAFASQSKAKPRTKVKPDYQVNFMAGEIQTVDQFEAEFYGAGQSAAAPTRTSMKAKVIDHVEWISPQEAQQMVIPLKITSGPHKGQTAEAKIQQMNGLQFTAYVTRINGQEIEPGTMEVRRKNTKYLRSQLKRQGGESFGDRVMGTVAAIGGEIATDQLADVRGGNHISRLVSNPQRRTREVTQYWRFDGEVELVPVG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009932_1	1.1\|59594\|51\|NC_009932\|CRISPRCasFinder	59594-59644	51	NC_009932	Acaryochloris marina MBIC11017 plasmid pREB7, complete sequence	59594-59644	0	1.0
NC_009932_1	1.1\|59594\|51\|NC_009932\|CRISPRCasFinder	59594-59644	51	NC_009933	Acaryochloris marina MBIC11017 plasmid pREB8, complete sequence	90318-90368	3	0.941

1. spacer 1.1|59594|51|NC_009932|CRISPRCasFinder matches to NC_009932 (Acaryochloris marina MBIC11017 plasmid pREB7, complete sequence) position: , mismatch: 0, identity: 1.0

tctttggttttttcatcaaaggctaacggtgcagttagcctcaatcggtgt	CRISPR spacer
tctttggttttttcatcaaaggctaacggtgcagttagcctcaatcggtgt	Protospacer
***************************************************

2. spacer 1.1|59594|51|NC_009932|CRISPRCasFinder matches to NC_009933 (Acaryochloris marina MBIC11017 plasmid pREB8, complete sequence) position: , mismatch: 3, identity: 0.941

tctttggttttttcatcaaaggctaacggtgcagttagcctcaatcggtgt	CRISPR spacer
cttttagttttttcatcaaaggctaacggtgcagttagcctcaatcggtgt	Protospacer
..***.*********************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

39347 : 114828

Bacillus_phage(25.0%)

tail,integrase,transposase

attL 87899:87916|attR 102477:102494

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012168287.1\|39347_40058_+\|transposase	IS6-like element ISAcma1 family transposase	A0A077SL39	Escherichia_phage	8.1e-55	48.0
WP_012168288.1\|40138_40300_+	HAD hydrolase-like protein	NA	NA	NA	NA
WP_012168289.1\|40511_41570_+	potassium channel protein	NA	NA	NA	NA
WP_012168290.1\|41566_43381_+	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	6.7e-53	33.7
WP_012168292.1\|44109_45612_+	sodium:solute symporter family protein	NA	NA	NA	NA
WP_012168293.1\|45663_46284_-	hypothetical protein	NA	NA	NA	NA
WP_012168294.1\|46574_47561_-	hypothetical protein	NA	NA	NA	NA
WP_012166590.1\|47868_49326_+	SLBB domain-containing protein	NA	NA	NA	NA
WP_012166589.1\|49504_50977_-	trypsin-like peptidase domain-containing protein	A0A1V0CPG8	Kaumoebavirus	5.0e-22	23.8
WP_012168297.1\|51315_52026_+	hypothetical protein	NA	NA	NA	NA
WP_187153006.1\|52368_53514_+\|tail	lamin tail domain-containing protein	NA	NA	NA	NA
WP_041661511.1\|53965_57721_-	hypothetical protein	NA	NA	NA	NA
WP_012168303.1\|58247_59519_-	sigma-70 family RNA polymerase sigma factor	A0A219UQX8	Bacillus_phage	1.2e-13	30.0
WP_148216138.1\|60468_60705_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012168306.1\|60765_61629_+	hypothetical protein	NA	NA	NA	NA
WP_012168307.1\|61713_62370_+	hypothetical protein	NA	NA	NA	NA
WP_012168308.1\|62381_65507_+	hypothetical protein	NA	NA	NA	NA
WP_041661512.1\|65510_66656_+	hypothetical protein	NA	NA	NA	NA
WP_148216139.1\|66681_67959_+	hypothetical protein	NA	NA	NA	NA
WP_012168312.1\|68025_68505_+	hypothetical protein	NA	NA	NA	NA
WP_012168313.1\|68497_68926_+	hypothetical protein	NA	NA	NA	NA
WP_012160919.1\|68922_70233_-\|transposase	IS701-like element ISAcma8 family transposase	NA	NA	NA	NA
WP_012168315.1\|70604_71981_+	hypothetical protein	NA	NA	NA	NA
WP_012168316.1\|72154_72649_+	hypothetical protein	NA	NA	NA	NA
WP_012168318.1\|73914_74370_+	DUF29 domain-containing protein	A0A0K2QQ08	Ralstonia_phage	1.4e-07	34.8
WP_041661532.1\|74503_75244_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_187153007.1\|75445_75844_-	hypothetical protein	NA	NA	NA	NA
WP_012168322.1\|76221_76716_+	hypothetical protein	NA	NA	NA	NA
WP_012168323.1\|77210_80411_+	D-alanyl-D-alanine carboxypeptidase family protein	S5M424	Bacillus_phage	1.7e-19	42.7
WP_012168325.1\|80861_81080_+	hypothetical protein	NA	NA	NA	NA
WP_049783922.1\|81081_81291_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_012160902.1\|81483_82140_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012160901.1\|82202_83048_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012168327.1\|83112_83988_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_012168329.1\|84464_85463_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_012168330.1\|85499_86318_-	SDR family NAD(P)-dependent oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	5.2e-05	25.7
WP_012168331.1\|86341_87181_-	SDR family NAD(P)-dependent oxidoreductase	A0A2P0VP75	Tetraselmis_virus	2.7e-09	30.3
87899:87916	attL	NA	NA	NA	NA
WP_012168336.1\|87944_89747_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_012168337.1\|89736_90174_+	hypothetical protein	NA	NA	NA	NA
WP_083776924.1\|90182_90377_-	hypothetical protein	NA	NA	NA	NA
WP_148216128.1\|90445_90628_-	hypothetical protein	NA	NA	NA	NA
WP_012168339.1\|90896_92420_+	hypothetical protein	NA	NA	NA	NA
WP_012168340.1\|92663_92900_+	hypothetical protein	NA	NA	NA	NA
WP_012168342.1\|93460_93871_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012168343.1\|94059_97989_-	relaxase domain-containing protein	NA	NA	NA	NA
WP_148216140.1\|99449_100454_+	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA
WP_012168346.1\|100998_102054_+	ParM/StbA family protein	NA	NA	NA	NA
WP_148216129.1\|102046_102460_+	hypothetical protein	NA	NA	NA	NA
WP_012168348.1\|102523_103213_+	hypothetical protein	NA	NA	NA	NA
102477:102494	attR	NA	NA	NA	NA
WP_012168349.1\|103221_103488_+	hypothetical protein	NA	NA	NA	NA
WP_012168351.1\|104253_104478_+	hypothetical protein	NA	NA	NA	NA
WP_012168352.1\|104474_105380_+	hypothetical protein	NA	NA	NA	NA
WP_012168353.1\|105519_106062_+	hypothetical protein	NA	NA	NA	NA
WP_012168356.1\|106574_106958_+	DUF1622 domain-containing protein	NA	NA	NA	NA
WP_012168357.1\|107627_108473_+	serine/threonine protein kinase	NA	NA	NA	NA
WP_012168358.1\|108485_108641_-	hypothetical protein	NA	NA	NA	NA
WP_012168360.1\|109939_110383_+	photosystem II complex extrinsic protein PsbU	NA	NA	NA	NA
WP_041661514.1\|110528_111731_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_012168363.1\|112435_112651_+	hypothetical protein	NA	NA	NA	NA
WP_012166885.1\|113091_114828_+\|transposase	IS21-like element ISAcma26 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage