CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_009958	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI04, complete sequence	0 crisprs	NA	0	1
NC_009955	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI01, complete sequence	0 crisprs	RT,PrimPol	0	2
NC_009956	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence	2 crisprs	NA	4	0
NC_009959	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI05, complete sequence	0 crisprs	NA	0	0
NC_009957	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI03, complete sequence	0 crisprs	csa3,PrimPol	0	1
NC_009952	Dinoroseobacter shibae DFL 12 = DSM 16493, complete sequence	3 crisprs	cas9,cas1,cas2,cas3,csa3,WYL,cse2gr11,cas7,cas5,cas6e,DEDDh	30	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009956_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009956_1

87657-87843

Orphan

Consensus_repeat	Method
GGCGGCGCGGGCGATGACAGCCTG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_009956_1

>merge|NC_009956|1|87657-87843|CRISPRCasFinder
GGGGATGCGGGCAATGACACGTTGAATGGCGGGGTCGGGTTCGACTGGCTCGACGGCGGTGACGGCAATGACATCCTGACCGGACTGGAAGGGTTCGACAGCCTCTTTGGCGGCGCGGGCGATGACAGCCTGTCGGGCAATGCGGGTAACGACCTGATCGAGGGCGGCGCGGGCGATGACACCCTGC

>NC_009956|1|1|87657-87843|CRISPRCasFinder
GGGGATGCGGGCAATGACACGTTG	AATGGCGGGGTCGGGTTCGACTGGCTCGAC
GGCGGTGACGGCAATGACATCCTG	ACCGGACTGGAAGGGTTCGACAGCCTCTTT
GGCGGCGCGGGCGATGACAGCCTG	TCGGGCAATGCGGGTAACGACCTGATCGAG
GGCGGCGCGGGCGATGACACCCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009956.1\|WP_012187123.1\|97189_97789_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NC_009956.1\|WP_012187260.1\|81945_83121_-\|polysaccharide-pyruvyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|377253
NC_009956.1\|WP_044029446.1\|69591_70758_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|185017
NC_009956.1\|WP_012187254.1\|72754_73885_-\|polysaccharide-pyruvyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|377253
NC_009956.1\|WP_012187257.1\|75904_79813_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340829
NC_009956.1\|WP_012187125.1\|94736_95561_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225398
NC_009956.1\|WP_012187121.1\|100521_101904_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_009956.1\|WP_012187265.1\|102304_103117_+\|hypothetical-protein	unknown	unknown	unknown
NC_009956.1\|WP_012187259.1\|80803_81883_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
NC_009956.1\|WP_012187122.1\|98309_100118_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NC_009956.1\|WP_012187256.1\|74803_75793_-\|hypothetical-protein	unknown	unknown	unknown
NC_009956.1\|WP_012187261.1\|83555_84359_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|238113
NC_009956.1\|WP_012187258.1\|79817_80708_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_009956.1\|WP_012187266.1\|103400_103925_+\|hypothetical-protein	unknown	unknown	unknown
NC_009956.1\|WP_157865441.1\|100168_100390_+\|hypothetical-protein	unknown	unknown	unknown
NC_009956.1\|WP_012187255.1\|73901_74681_-\|sulfotransferase	unknown	unknown	gnl\|CDD\|366246
NC_009956.1\|WP_157865446.1\|95557_96973_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_009956.1\|WP_044029447.1\|88392_94041_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NC_009956.1\|WP_012187264.1\|94096_94681_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379204
NC_009956.1\|WP_012187253.1\|70762_72700_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377945

Protein	Function_ID	Function_description	E-value
NC_009956.1\|WP_012187123.1\|97189_97789_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	3.30711e-50
NC_009956.1\|WP_012187260.1\|81945_83121_-\|polysaccharide-pyruvyl-transferase-family-protein	gnl\|CDD\|377253	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.	3.88559e-20
NC_009956.1\|WP_044029446.1\|69591_70758_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|185017	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.	0
NC_009956.1\|WP_012187254.1\|72754_73885_-\|polysaccharide-pyruvyl-transferase-family-protein	gnl\|CDD\|377253	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.	2.39236e-19
NC_009956.1\|WP_012187257.1\|75904_79813_-\|glycosyltransferase	gnl\|CDD\|340829	cd03799, GT4_AmsK-like, Erwinia amylovora AmsK and similar proteins. This is a family of GT4 glycosyltransferases found specifically in certain bacteria. AmsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.	1.411e-40
NC_009956.1\|WP_012187125.1\|94736_95561_-\|AAA-family-ATPase	gnl\|CDD\|225398	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only].	2.00587e-19
NC_009956.1\|WP_012187121.1\|100521_101904_-\|IS1182-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.78561e-28
NC_009956.1\|WP_012187259.1\|80803_81883_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.63441e-168
NC_009956.1\|WP_012187122.1\|98309_100118_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NC_009956.1\|WP_012187261.1\|83555_84359_-\|trypsin-like-serine-protease	gnl\|CDD\|238113	cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.	5.57412e-11
NC_009956.1\|WP_012187258.1\|79817_80708_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.02825e-07
NC_009956.1\|WP_012187255.1\|73901_74681_-\|sulfotransferase	gnl\|CDD\|366246	pfam00685, Sulfotransfer_1, Sulfotransferase domain.	1.41474e-07
NC_009956.1\|WP_157865446.1\|95557_96973_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	7.24409e-24
NC_009956.1\|WP_044029447.1\|88392_94041_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	3.74885e-22
NC_009956.1\|WP_012187264.1\|94096_94681_-\|hypothetical-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	0.00207972
NC_009956.1\|WP_012187253.1\|70762_72700_+\|hypothetical-protein	gnl\|CDD\|377945	pfam07940, Hepar_II_III, Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.	1.91546e-06

>NC_009956.1|WP_012187261.1|83555_84359_-|trypsin-like-serine-protease
MLRLVAVLLLCLTGLAQAQAPPAPDPGNDRVYRPGLSAICALGQRQSAGCAAIRAREILDAAAPPWSAIGRVNFGGLSQRSHCTGTLVAEDRVLTAAHCLYNAARKRWLPPESLRFVAGYQRSTGIGVAGVTGYVLDPVHDPDSPVFHGAVATDWAVLVLDAPLGATVGTLPLAGPEAAGEITLAGYAGLRPHVLSRARACPLESARAGGAEILATSCAAMQGDSGAPLLVMTPTGPAIRGVLSAVTTTPDGPRALAIPIDTLPVTP
>NC_009956.1|WP_012187260.1|81945_83121_-|polysaccharide-pyruvyl-transferase-family-protein
MKRPYISAISPLPGDDATRAPEAFLDATGQNTGNLIFSAALRRLVRGADFDITGPEAFARLRETCDGVVIAAANWLQPGRDLGEMAALIEQVDKPTVLVGLGAQAQDGRIPELPAGTRRLLAVVSERSGAISVRGDFSAEVLDHYGISNVTVTGCPSLLYHLDRPAAIARAPGDGPLRLGLNGLLPPQRDGPRMDLARFMLGETRRLGAAYVAQTELPLVRLARGTAQEADWPHLARALDVDLTLDGPNRAEAAAWAARRLRIFGNAPDWIDWARGRDLVIGTRLHGVIAPLLAGTPALLLTHDSRTQEMARQAGLPALPFAQVRQAGRIDPRALWARVDPDRFNTRQRAYFSAFCRFFDAVGIPHRLQPPQTTTPPTSSGTPPPRHGPAH
>NC_009956.1|WP_012187259.1|80803_81883_-|UDP-glucose-4-epimerase-GalE
MTQTILLTGGAGYIGSHTYVALKAAGFEVVILDDFSNAARDVPDRLELITGAPVRLYEGSVLDRGLLARLFTETRIDAVVHFAARKAVGESVAMPLAYFETNCTGLVGLLQEMEAACVHRLVFSSSATVYGIPDVTPTPETAPHRHMNPYGLTKITGELILDALATSDPKWAFGTLRYFNPAGAHGSALIGEDPSDIPNNLMPYIAQVAMGQRPHLQVFGDDYPTPDGTGVRDYIHVEDLAEGHVLSLKSLLETGESHLVNLGTGRGYSVLEMVAAYSAACGRALPYRIVDRRPGDVPIYCATVERARALLGFEAKRDLAQMCASSWAWIQARAQANAAGRPTPPRQDGPYRPRGTPSA
>NC_009956.1|WP_012187258.1|79817_80708_-|hypothetical-protein
MPKTSTTKTVAASRRRSATGSGGSTPPRVSATKAEVVEILLETQKKLLEAETALGTRTRTISALEDELAAARAEADRAETDAYAAQVEIRILEGARDAAHARLAEARTEVLELTRVLARMQEHRDQDAARIAELSDRLTKAEGSGNSHLEMLQQELATARAKAGNLPDLEQTVARQTQQLATQAQEIVELSRLLSEAEARADDSDRAVHAAGTWLAPLLGPLLSHPSGAPFSEEEYTEYAARIVASGAFDPDWYNMTNPDVAESGSDPARHFLQYGLAEGRAPRDLRVPHQPPEAE
>NC_009956.1|WP_012187257.1|75904_79813_-|glycosyltransferase
MNANADSMQRDRTDLEASGLFDPAWYLETYPDVAQLGMDPLEHFLWLGARLNRSPGPTFDAAAYRADYADVARADYNPVLHYIRYGRPEGRKARAPGLTIPPLAESAGASAPFRRLTGHRARRPGHPTVLLVAHIVGHQLYGSERSLLDMLDGLAAMDANVIVAVPSTRNKAYIELLRARACAVSVLSYGWWRAGTAPDETVIATFARVITEERIDIVHANTIMLREPLIAARRLGLPAVVQARELIRHDAKLLELIGLSADEIIAALWENCDVMIANSRATAACFDTETRRSAVVYNTADMTALQALPPPPAEAPLRVGMVSSNVPKKGLADFAEVARLVAAELPDAEFLLIGPQHEHTEAIEARIADGSLPRSLRVAGYRDTPAEAMAELDLVLSLSHFQESFGRTVLEAMAAGRPVIVYDHGAPPELVVSSKTGQVVPFGDIQAVADQVLAYGRDRKRLLVDGLRAADHAETTFGRTAYNAAMAAAYAPLLQELARDAHRPEQMVLRARDLPVKIPRDTLKVAYFCWHFPVPSETFVLNELRILKAQGIDVTVFCRDSPYPDFTPDFDITWEQVHDADHLARRLTETGRDVVHGHFVYPTVTEMVWPAARIANIPFTCIAHAQDIFRYRNAVANRIDEISADPLCRQIFTLSRFHRQYLVDRGVRPEKVTINSNCIDPELFSGGKIPDRPARRTRSVAAVSRFADKKGLEVLVRAGKLLEDDGITINIHGYGPLEDLYRQIIAEQEITNVTIHGPVEGRAALLEVFRTHDLFAVPSVRALDGDMDGIPTTLMEAMAAGLPVLTTPVAGIPDLVRDGITGMLSEDATPEALAAKIREFYALPEIAVQVMIEDAEALLRRNHNGPDLVNTLLRFWAGETIDLMIVSWNNLAQTREVIRRLYEYTDLPFHLIVCDNGSDPPALAHLLSVYAARTNFTLILNRENAFVGPGTNKCIAQGDSDYMIYVCGKEGMTTRHGWEKSFVTYMDAHPRVGQAGTLCYSPSYLFGRDYPEGVALFPDFRNPGFAADNPDRPFSHVQGGFFVIRRATYDEIGGFSDAVPHSYTDVEFSYYVESCGWELGTVPGLMALFNKTRPGLEARVDEHHGALHPPNLDDLPWLDRIARREVRHCNMCGHQAPAFEGGDAEARCAGCGSDRRARSLHRVLAETILLYRRLPGLGVNLPAPLQGFWSDQFQGPMLPLEAFTDPLSRGQTLPNRAGALQLACLNDVLDDVALRGAALAETARLLAPGATLFVAGATPLDTLEAEITAAGFTPAGRKRPCSAVLRFDWIEIGLYTRAGDTQ
>NC_009956.1|WP_012187256.1|74803_75793_-|hypothetical-protein
MERLYIHIGAPKTGTTYIQHVLSKSAHALAAHDFVYLEASRLYAGHHCLAFAMQGEDNPQTHEPIDLAAELDSLTTEIDGTRARFGILSSEEFFICPEGAIAALRTALGDLPVTIIAFVRRSDDFLLSYHNERMKKFTKVFTHSIKDMIADRTLWPREMAFRTNLLTWARVFPETPPRVHAYEAGNPLVTLLGDLGIHSGIGIPPKMRPNRSKPAKAIALLRLLKLADWPADDRGRVCTALFDAFAEDTTPMIGPRDRARILQGNDRELSGLFESLGLEDPYADIARRLPATEVRPVTEIPVAALIDEAEAGTGCDFSNLRAFAAQAAE
>NC_009956.1|WP_012187255.1|73901_74681_-|sulfotransferase
MKAPNLFILGAQKAGTTYLGKAFSHHPEIFFSEPKELLFFHKPGLTRKDYRTYLLDYFAEAEDQPWRGEGSTTYLQWPEALPQIKRFVPGRPKFIVCLRQQTEKSVSFFIHNWRRDRYAPGQTITETVPMPIAFSPLMTGLYAPSIKRWLAEYPREDFLFLNFDWLREDPGKFVTAATDFLGVAPTTDIPDKLVNAGLPLVWEDDVLTIAKTPEPGQVKPVFTPEELHEIHAMFQDDITKTEDLTGLDLSAWREMPKFG
>NC_009956.1|WP_012187254.1|72754_73885_-|polysaccharide-pyruvyl-transferase-family-protein
MKNPYISSLYPEVPGPPFPKTQEYLQCAGNNLGNFMFCSSVRRIVRTTTHPRGDFRRLDLKTIAAECDGIVIAAANWLQPKQNYGGLADQIEKANVPAAITGIGAQSSGGKIPELLPGMLRLLKVVSERSHSISVRGPFSAEVLNHYGIQNVTVTGCPSLLWHRDHPAEITRLPRDGRVGRVTLNGTLHRFDIPKTPGKVVKLTRFTLLQAMAWGCDYVVQNERPFLQAHLGELAEDDQDSWDFLHYVFDEPDRAILKTYLERHIQAFPNIPEWMAYCANHDLVLGSRLHGVIVGLLSGTPGVLITHDNRTEEMGRFAGIPTITAEDFMSRPKIDPDAILAEADFDAFNARQKDYFRDFVAWFDANEIPHRLTVTP
>NC_009956.1|WP_012187253.1|70762_72700_+|hypothetical-protein
MTSYIMTAAQQAPDGDAKDLKQALQKAFERHAGRLPADGSEVMSSINASVAVRLFALMYMRGVQHRLMPDNESAVLCEALCKTVCEVEITDKFDDMFVSNFVLGLIVFLDLVQDDLHPDTRAGLVAKIAECRDWLSEARHRKVFGTRETEGTYAWNHSACAAAGLALSVIWTRDSQADWTDTDFHDVDFGLRRIEDYFLHGIRETGVPYEGFYYCGAVFRVLGPFDILVRKDAEVERRYRRIRDRHKRKLGQLLDWYESGTIVNQRALLSYNHSLYDAHPAVNGFLTFFRSEFEVKAGRMWSRLMAKGTSLQFVERSRDWGDNTLHEALLFLHPKGYSAPRNKVQTLLSRTEGYGLLVSEDASSRLFVKASKLLIGPHNQSDAGHVSWVCNGDAVLIDAGPGRKVRDASKKWAEYSKGTYRTEGSGASSYGHNAVLIDGRGQLPSGEGDGIEGRLSYVRQTEDFWLLGTDARAAYNKDEYNPVQVADRHVAFSKAAGAYLILIDRVVPQAPGTHRFQRLLQFADPAQVVEEDGPGRMAVTSGGTVYDLWTLSPTGPLSTVYEEEKFQMPIKTRGVLAHGVEAEDLWMYTVLAARGSAGVPTDVSLRPAEDAAFGAALQLVLEGGDTRLLALSRTTGELERISDDG
>NC_009956.1|WP_044029446.1|69591_70758_+|nucleotide-sugar-dehydrogenase
MKIAVAGIGYVGLSLSVLLAQRHEVVALDISQERVARLNAGTAPIADPEIEAYLVEKTLDLTATTDPATAFAGARFIVVATPTSYDPETNRFDTSSVEQVVETALALAPEATIVIKSTIPVGFTRALRDRLGVENILFSPEFLREGKALWDNLHPSRIVVGGAGEAARVFADLLVEGALDRDVPVLFTRPTEAEAIKLFANTYLAMRVAYFNELDSYALAHGLDSRSVIEGVCHDPRVGNHYNNPSFGYGGYCLPKDTKQLLANYAAVPQNMISAIVEANTTRKDFIAEQVLALAPKSVGIYRLVMKAGSDNFRDSSIQGIMKRLKAKGIEVTVFEPELPDETFFNSRVERDLAAFKAGADVIVANRMDDAIRDVAEKVFTRDLFGES
>NC_009956.1|WP_044029447.1|88392_94041_+|calcium-binding-protein
MTTYNVRGIAVTYDAFVGSDLPINLGSAILQLTGSDGATFSYELGTPPEPGAPPRAVLDTSEIIGARLSGEPLDSEEEFILNLRWRDGPITRETTVLVLYVEDSPEFGVDTDYIFYLGGAPLPELRTVQDWEAFDDTILSIAPPTSGPFAPGADIVIEDLPSLLGPTKTFTLQGTMIVYDDNVGFGEADDVIPAEVVFTAPEDAVFSYTVEETGDPDTPFILTLDSGQILGAIFNGNPDIEIAGELFLDVTWQDAGNVTRETTVLALFGFDPDNFFVSFDYIFYLDGHPLPDFQTVQDWEDFDDSVTAVDVPSSGPFAPETDIALADLFGVVVADAPGNIILGTEGDDNSDLPPGEDIFGTDLDDDIRALAGDDFINVSFGFDLIDGGTGFDVMNYEGSGPVFVNNTGATVIDDWNGEEAEVGPFQVLKGFGGFEGVDGLTDIEAFELSQFHDVAYLGDNADGLTFAYDLAGDDKVVAAQSGLTATTFIAGSGNDMFIGSSNPFDFLDYGEQAEDDDDAAGPAFRGIFVEFTGGGNGTATDPWDGFDMFEGIEFVGGTRFQDIFVGDETDNIFHGEGGDDIFIGGAGNDFIDGGPGETEDDEDFDTLIYANETGEAGIFADMGTGLIVDTFGDTDTVVSIDRVIGTMDEDVFVGSDFQDFIQYVGLAGEDVFFAGAAYETLRYREDDDFGALHGVYVDLAANFAIDGFGDEDTIITDDGEIDRVRGSDFNDVLATSNVGARLEGEDGDDFLKGRLGEDRLEGDAGNDTILAGAGDDQLSDGRGFDYLNGGAGWDLFFRDIGQDFEDFSWTPVVDLTEGKFFDPSEDPALFDILENIEAVSLEGNFNMTLIGDDGDNFLESDAGNDLLEGNGGDDELDGGDGDDTLNGGDGNDLLFGGEGNDGLYGDAGDDELYGEAGDDTLEGGDGDDYLNGGGGNDVINGGDGDDFIDIGGSGVATVDGGEGWDTYFVDLTGFNPGDFIYELNLITGYAGVFGNPFNSDFVADVEEILVEGDLETRLTGTNEREIFNGGDGNDEITGNGGDDELIGNDGNDTLIGGDGRDFLAGGDGDDTLDASTGAASTQGFGDYIRAGLGSNTIIGHAALFAAGEGIDISYADLAGIGGVTITVGANGTGTTVSGTPGQVDDTFTFAHYFEGSRDGDTFTGSNNADFEGWVGLDGADDFDGGGGFDVLFYDTDEAYGGAGGIIATFADGAGTVEDSWGNLDTFTDIDEIVGSQSDDVMEATGSTGVRFDGEDGDDLLIGTDADDVLRGGDGDDEIHAGLGTDEIDGGEGSDTLVTDVTGLGPDQITVDLDPLAGSQTIAGEGPGAADTLVGTENFTLTGDWDATVIGSDAANIITTGGGADDITTGLGRDTVNAGAGDDVIDASAGDLASEGFGDRIRPGLGSDTVLGSATLYAQGGGINLAYFDVSGVSGLTITVGVNGSGTVVSGTAGLVNDSFTFADVFGGSQDDDVITGTDRAEYEGFQGYGGNDVIDGRGGFDEVYYLNASGAVQINLQNGSVTGADGTDTLLNIESIFASHHDDTIQGSTARDQVNGGDGDDDINARGGFDLIDGGAGNDTINGGVGSDVLNGDGGNDTIIAGDGFDEVDGGAGDDLLKGNAGNDFIAGGAGADRIEGGIGRDMLHGGDDDDDISGAEGFDEIFGDAGDDLLRGNAGNDTIEGGAGDDRIEGGIGADTLRGGVGNDEIVASEGFDALFGEDGDDTLLGNAGNDLLEGGAGMDALFGGQGADTLRGGDGDDILRGETGADTLIGGVGDDELRGGQGGDRLSGGAGNDILVGGSGADVFVFEGGVDTITDMSLIVDRIEIDGDALGIAGLTGAQVLDQFAEAIGPSTQIVFDAANRIDLQGVTNLTQLEGLIEVI
>NC_009956.1|WP_012187264.1|94096_94681_-|hypothetical-protein
MICDITPAYGVLNTIIYKEMQRVAPAKFLFLMRDPVDRLWSQVRMGVAARAKAPEDPADFEAACLAWVRERHRTDKIENIHRADYARTLEKLENALPVETRDTQLLTLFFEDLFCQASADRICAFLGIAPVTAAPDKVANPGRPLRLPEEAEARLYDGLRAQYAFAEARFGRAGLPAVWRDRMARLECVPPPRR
>NC_009956.1|WP_012187125.1|94736_95561_-|AAA-family-ATPase
MSRQTRRTGTFLVTREHKRFVEFANAVRRNATIGLCHGRAGVGKTLSARRYANWDLIEPLITTWGRREDSDKKVYAASSRARTLFYTPPVGGSISALRKDIQPFIMRLCVCIDSYGNPKWAERPLTPLGLIELVIIDEAERLTMTGLEFLRDQFDRSDAGLILIGMPGIEKRMSQYPQLYSRIGFVHEYPPLSKDEMQFVLQRQWRKWGFGQDDADFTDDRVAAAIIRLTAGNFRLLQRLFMQIERIARINEMAAITEDVVEAAAQTLVIGNAN
>NC_009956.1|WP_157865446.1|95557_96973_-|DDE-type-integrase/transposase/recombinase
MRRFNILRQHLIDEVPLTEVARVSGIPLRTLQRWTSRYQRFGLAGLARAPRSDAGQRRLSSELVELIEGLALHKPRLSTAAIHRRIIPIVKSRDWPVPSYATIHSIVNSLDPALVTLAHDGAAAYRDRFEMIHRHRAERPNAVWQTDHTQLDLIILDTNGAPVRPWLTIVLDDHSRAVAGYAVFVGAPSAIQTALALRQAIWRKDTPSWPICGLPDVLYTDHGSDFTSKHLEQVAADLRIELVFSTVGRPQGRGKIERFFGTINTELLPELPGALSNGKPASPPRLSLGELEVAVKTFVTAVYNARKHSEIDVPPNEAWRGDGWLPRMPNSLEQLDLLLVMALKTRQVRRDGIRFQGLLYTDPTLAAYVGKTVNIRYDPRDITELRVFHRDRFLCRAVSAHHAHHTISLKDIQQARTARRKALRNEITVKSRQITEFLPKPAPPPSREKQNPVSPDAPRQKLVLYKTDKTP
>NC_009956.1|WP_012187123.1|97189_97789_+|recombinase-family-protein
MTKTRVGYARCSTDKQDLAAQRTALLALDVAEDRIYTDHGLTGTNRERPGLAQALAAVREGDTLVVPKLDRLARSVPDARAIADELEKRGVKLALGASVHDPTDPMGKMFFNILATFAEFEADLIRMRTKEGMAIARAKGRLKGKKPKLSDRRQAELRRMYDTGDYSISDLAELFDVSRPTVYRVLQRTPSADASSAAV
>NC_009956.1|WP_012187122.1|98309_100118_+|phosphomethylpyrimidine-synthase-ThiC
MKDLTPTVTTGPLPASRRVYQPGTLHPQIRVPMREIDLHPSAGEPPVTVYDSSGPYTDPSAKIAINGGLPRLRADWIAARNDIELYEGRHVRPEDNGFAEGARLVPEFPVRHKPLQAKAGRAVTQMAYARAGIITPEMEFVAIRENLGRKAAKEALVRDGQDWGAAIPDFVTPDFVREEVARGRAIIPANINHPEAEPMGIGRNFLVKINANIGNSAVTSSMEEEVEKMVWATRWGADTVMDLSTGRNIHNIRDWIIRNSAVPIGTVPLYQALEKVEGIAEDLSWEVYRDTLIEQAEQGVDYFTIHAGVRLHMIPMTIKRVTGIVSRGGSIMAKWCLHHHRESFLYEHFAEICEIARAYDVSFSLGDGLRPGSIADANDEAQFAELETLGELTQIAWKHDCQVMIEGPGHVAMHKIKENMDKQLEVCGEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHLGLPNRDDVKIGVITYKIAAHAADLAKGHPGAQIRDDALSRARFEFRWEDQFNLSLDPETARSMHDETLPKEAHKVAHFCSMCGPKFCSMRISHDIRAEAQKDGMAKMAEKFRKGGDLYVPLDKVKEI
>NC_009956.1|WP_157865441.1|100168_100390_+|hypothetical-protein
MRLAQRIPSQIVMHVAASVLLAANYIEVMHRIQWEFSRSTNARFLHLRKPPRPTPPKTPFKTQTVVEGFLACC
>NC_009956.1|WP_012187121.1|100521_101904_-|IS1182-family-transposase
MMGPRQEAQAALFYEFSLEEHVPQDHLLRSIDRHLDLSSIRGHLADFYSHTGRPSVDPELMIRMLLVGYCFGIRSERRLCEEVHLNLAYRWFCRLELTDRIPDHSTFSKNRHGRFRDSDLLRHVFEATVARCIEEGLVGGQGFAVDASLISADVQKQNSSNPEGWAAREIDPTDAPRAVREYLDTLDDEAFGAATTAKPKFTAHADPASQWTAARKGPAFFAYSDNYLIDTDHGIIVDVDASRSNKTAEVGAMRKMLDRTEDRFGVKPDWIAADTAYGSSDNLVWLALKRQILPFIPVFDKGERTDGTFSRSDFTWDDENDRYICPSGKEMRHTWRTYSDPARNAPAWKARRYRTRKSDCTGCALKAKCCPNSEVRAIHREKYEIVRDFARQCTASEYNPTAQRRRKKVEMLFAHLKRILGLGRLRLRGPCGVQDEFTLAATAQNLRKLAKLKPMVPATE
>NC_009956.1|WP_012187265.1|102304_103117_+|hypothetical-protein
MSIDYNDLQSKGVDIAAAINETFLNKFATSHHTANPSLYSGKQRFTQFDNDIEIAFKANTPLTFDFSRQVSRARFKRLWLQHLKIKGVPESTKLDEVLTTPPNVSLGCESVIFEVKIFDGKSNDVLLTVDFDWSLLTLAAISLDDGKLSMEPVRIGFSQRMAIIEEAIAARVSSKLSTLGVQQKPERPATFGDPSDPVWCAKLEKMIILLLNQVLAVQIANFIAEFELPRAIEVADGIAIDARLFGDTQRQSSGRRSHYRATDWHGSSIV
>NC_009956.1|WP_012187266.1|103400_103925_+|hypothetical-protein
MKLDRLIRAEAEWWLRVENAKAGVVTGGVQLEADVAVGGGLKVSHFNIDPKKFGQWKDYGVGIELFPIPNFGVQAFPTFPASGVFINGRLLTTGIGLRFLGLPSWANDLISWITGFLTAPLLAIIRAVIARFRIRIMKYPKHFPGTGLEWTPNLNERLENVGPYLLLSGDPAFE

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Crispr_ID: NC_009956_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009956_2

87927-88004

Orphan

Consensus_repeat	Method
GGCGGCGCGGGCGATGACAGCCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009956_2

>merge|NC_009956|2|87927-88004|CRISPRCasFinder
GGTGGGGCGGGCAATGACACTCTGCAGGGCGGTGAGGGCAATGACCGGCTGGCCGGCGAGGCGGGCAACGATGTCCTG

>NC_009956|2|2|87927-88004|CRISPRCasFinder
GGTGGGGCGGGCAATGACACTCTG	CAGGGCGGTGAGGGCAATGACCGGCTGGCC
GGCGAGGCGGGCAACGATGTCCTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009956.1\|WP_012187123.1\|97189_97789_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NC_009956.1\|WP_012187260.1\|81945_83121_-\|polysaccharide-pyruvyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|377253
NC_009956.1\|WP_044029446.1\|69591_70758_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|185017
NC_009956.1\|WP_012187254.1\|72754_73885_-\|polysaccharide-pyruvyl-transferase-family-protein	unknown	unknown	gnl\|CDD\|377253
NC_009956.1\|WP_012187257.1\|75904_79813_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340829
NC_009956.1\|WP_012187125.1\|94736_95561_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225398
NC_009956.1\|WP_012187121.1\|100521_101904_-\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_009956.1\|WP_012187265.1\|102304_103117_+\|hypothetical-protein	unknown	unknown	unknown
NC_009956.1\|WP_012187259.1\|80803_81883_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
NC_009956.1\|WP_012187122.1\|98309_100118_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NC_009956.1\|WP_012187256.1\|74803_75793_-\|hypothetical-protein	unknown	unknown	unknown
NC_009956.1\|WP_012187261.1\|83555_84359_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|238113
NC_009956.1\|WP_012187258.1\|79817_80708_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NC_009956.1\|WP_012187266.1\|103400_103925_+\|hypothetical-protein	unknown	unknown	unknown
NC_009956.1\|WP_157865441.1\|100168_100390_+\|hypothetical-protein	unknown	unknown	unknown
NC_009956.1\|WP_012187255.1\|73901_74681_-\|sulfotransferase	unknown	unknown	gnl\|CDD\|366246
NC_009956.1\|WP_157865446.1\|95557_96973_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_009956.1\|WP_044029447.1\|88392_94041_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NC_009956.1\|WP_012187264.1\|94096_94681_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379204
NC_009956.1\|WP_012187253.1\|70762_72700_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377945

Protein	Function_ID	Function_description	E-value
NC_009956.1\|WP_012187123.1\|97189_97789_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	3.30711e-50
NC_009956.1\|WP_012187260.1\|81945_83121_-\|polysaccharide-pyruvyl-transferase-family-protein	gnl\|CDD\|377253	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.	3.88559e-20
NC_009956.1\|WP_044029446.1\|69591_70758_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|185017	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.	0
NC_009956.1\|WP_012187254.1\|72754_73885_-\|polysaccharide-pyruvyl-transferase-family-protein	gnl\|CDD\|377253	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.	2.39236e-19
NC_009956.1\|WP_012187257.1\|75904_79813_-\|glycosyltransferase	gnl\|CDD\|340829	cd03799, GT4_AmsK-like, Erwinia amylovora AmsK and similar proteins. This is a family of GT4 glycosyltransferases found specifically in certain bacteria. AmsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.	1.411e-40
NC_009956.1\|WP_012187125.1\|94736_95561_-\|AAA-family-ATPase	gnl\|CDD\|225398	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only].	2.00587e-19
NC_009956.1\|WP_012187121.1\|100521_101904_-\|IS1182-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.78561e-28
NC_009956.1\|WP_012187259.1\|80803_81883_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.63441e-168
NC_009956.1\|WP_012187122.1\|98309_100118_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NC_009956.1\|WP_012187261.1\|83555_84359_-\|trypsin-like-serine-protease	gnl\|CDD\|238113	cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.	5.57412e-11
NC_009956.1\|WP_012187258.1\|79817_80708_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	1.02825e-07
NC_009956.1\|WP_012187255.1\|73901_74681_-\|sulfotransferase	gnl\|CDD\|366246	pfam00685, Sulfotransfer_1, Sulfotransferase domain.	1.41474e-07
NC_009956.1\|WP_157865446.1\|95557_96973_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	7.24409e-24
NC_009956.1\|WP_044029447.1\|88392_94041_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	3.74885e-22
NC_009956.1\|WP_012187264.1\|94096_94681_-\|hypothetical-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	0.00207972
NC_009956.1\|WP_012187253.1\|70762_72700_+\|hypothetical-protein	gnl\|CDD\|377945	pfam07940, Hepar_II_III, Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.	1.91546e-06

>NC_009956.1|WP_012187261.1|83555_84359_-|trypsin-like-serine-protease
MLRLVAVLLLCLTGLAQAQAPPAPDPGNDRVYRPGLSAICALGQRQSAGCAAIRAREILDAAAPPWSAIGRVNFGGLSQRSHCTGTLVAEDRVLTAAHCLYNAARKRWLPPESLRFVAGYQRSTGIGVAGVTGYVLDPVHDPDSPVFHGAVATDWAVLVLDAPLGATVGTLPLAGPEAAGEITLAGYAGLRPHVLSRARACPLESARAGGAEILATSCAAMQGDSGAPLLVMTPTGPAIRGVLSAVTTTPDGPRALAIPIDTLPVTP
>NC_009956.1|WP_012187260.1|81945_83121_-|polysaccharide-pyruvyl-transferase-family-protein
MKRPYISAISPLPGDDATRAPEAFLDATGQNTGNLIFSAALRRLVRGADFDITGPEAFARLRETCDGVVIAAANWLQPGRDLGEMAALIEQVDKPTVLVGLGAQAQDGRIPELPAGTRRLLAVVSERSGAISVRGDFSAEVLDHYGISNVTVTGCPSLLYHLDRPAAIARAPGDGPLRLGLNGLLPPQRDGPRMDLARFMLGETRRLGAAYVAQTELPLVRLARGTAQEADWPHLARALDVDLTLDGPNRAEAAAWAARRLRIFGNAPDWIDWARGRDLVIGTRLHGVIAPLLAGTPALLLTHDSRTQEMARQAGLPALPFAQVRQAGRIDPRALWARVDPDRFNTRQRAYFSAFCRFFDAVGIPHRLQPPQTTTPPTSSGTPPPRHGPAH
>NC_009956.1|WP_012187259.1|80803_81883_-|UDP-glucose-4-epimerase-GalE
MTQTILLTGGAGYIGSHTYVALKAAGFEVVILDDFSNAARDVPDRLELITGAPVRLYEGSVLDRGLLARLFTETRIDAVVHFAARKAVGESVAMPLAYFETNCTGLVGLLQEMEAACVHRLVFSSSATVYGIPDVTPTPETAPHRHMNPYGLTKITGELILDALATSDPKWAFGTLRYFNPAGAHGSALIGEDPSDIPNNLMPYIAQVAMGQRPHLQVFGDDYPTPDGTGVRDYIHVEDLAEGHVLSLKSLLETGESHLVNLGTGRGYSVLEMVAAYSAACGRALPYRIVDRRPGDVPIYCATVERARALLGFEAKRDLAQMCASSWAWIQARAQANAAGRPTPPRQDGPYRPRGTPSA
>NC_009956.1|WP_012187258.1|79817_80708_-|hypothetical-protein
MPKTSTTKTVAASRRRSATGSGGSTPPRVSATKAEVVEILLETQKKLLEAETALGTRTRTISALEDELAAARAEADRAETDAYAAQVEIRILEGARDAAHARLAEARTEVLELTRVLARMQEHRDQDAARIAELSDRLTKAEGSGNSHLEMLQQELATARAKAGNLPDLEQTVARQTQQLATQAQEIVELSRLLSEAEARADDSDRAVHAAGTWLAPLLGPLLSHPSGAPFSEEEYTEYAARIVASGAFDPDWYNMTNPDVAESGSDPARHFLQYGLAEGRAPRDLRVPHQPPEAE
>NC_009956.1|WP_012187257.1|75904_79813_-|glycosyltransferase
MNANADSMQRDRTDLEASGLFDPAWYLETYPDVAQLGMDPLEHFLWLGARLNRSPGPTFDAAAYRADYADVARADYNPVLHYIRYGRPEGRKARAPGLTIPPLAESAGASAPFRRLTGHRARRPGHPTVLLVAHIVGHQLYGSERSLLDMLDGLAAMDANVIVAVPSTRNKAYIELLRARACAVSVLSYGWWRAGTAPDETVIATFARVITEERIDIVHANTIMLREPLIAARRLGLPAVVQARELIRHDAKLLELIGLSADEIIAALWENCDVMIANSRATAACFDTETRRSAVVYNTADMTALQALPPPPAEAPLRVGMVSSNVPKKGLADFAEVARLVAAELPDAEFLLIGPQHEHTEAIEARIADGSLPRSLRVAGYRDTPAEAMAELDLVLSLSHFQESFGRTVLEAMAAGRPVIVYDHGAPPELVVSSKTGQVVPFGDIQAVADQVLAYGRDRKRLLVDGLRAADHAETTFGRTAYNAAMAAAYAPLLQELARDAHRPEQMVLRARDLPVKIPRDTLKVAYFCWHFPVPSETFVLNELRILKAQGIDVTVFCRDSPYPDFTPDFDITWEQVHDADHLARRLTETGRDVVHGHFVYPTVTEMVWPAARIANIPFTCIAHAQDIFRYRNAVANRIDEISADPLCRQIFTLSRFHRQYLVDRGVRPEKVTINSNCIDPELFSGGKIPDRPARRTRSVAAVSRFADKKGLEVLVRAGKLLEDDGITINIHGYGPLEDLYRQIIAEQEITNVTIHGPVEGRAALLEVFRTHDLFAVPSVRALDGDMDGIPTTLMEAMAAGLPVLTTPVAGIPDLVRDGITGMLSEDATPEALAAKIREFYALPEIAVQVMIEDAEALLRRNHNGPDLVNTLLRFWAGETIDLMIVSWNNLAQTREVIRRLYEYTDLPFHLIVCDNGSDPPALAHLLSVYAARTNFTLILNRENAFVGPGTNKCIAQGDSDYMIYVCGKEGMTTRHGWEKSFVTYMDAHPRVGQAGTLCYSPSYLFGRDYPEGVALFPDFRNPGFAADNPDRPFSHVQGGFFVIRRATYDEIGGFSDAVPHSYTDVEFSYYVESCGWELGTVPGLMALFNKTRPGLEARVDEHHGALHPPNLDDLPWLDRIARREVRHCNMCGHQAPAFEGGDAEARCAGCGSDRRARSLHRVLAETILLYRRLPGLGVNLPAPLQGFWSDQFQGPMLPLEAFTDPLSRGQTLPNRAGALQLACLNDVLDDVALRGAALAETARLLAPGATLFVAGATPLDTLEAEITAAGFTPAGRKRPCSAVLRFDWIEIGLYTRAGDTQ
>NC_009956.1|WP_012187256.1|74803_75793_-|hypothetical-protein
MERLYIHIGAPKTGTTYIQHVLSKSAHALAAHDFVYLEASRLYAGHHCLAFAMQGEDNPQTHEPIDLAAELDSLTTEIDGTRARFGILSSEEFFICPEGAIAALRTALGDLPVTIIAFVRRSDDFLLSYHNERMKKFTKVFTHSIKDMIADRTLWPREMAFRTNLLTWARVFPETPPRVHAYEAGNPLVTLLGDLGIHSGIGIPPKMRPNRSKPAKAIALLRLLKLADWPADDRGRVCTALFDAFAEDTTPMIGPRDRARILQGNDRELSGLFESLGLEDPYADIARRLPATEVRPVTEIPVAALIDEAEAGTGCDFSNLRAFAAQAAE
>NC_009956.1|WP_012187255.1|73901_74681_-|sulfotransferase
MKAPNLFILGAQKAGTTYLGKAFSHHPEIFFSEPKELLFFHKPGLTRKDYRTYLLDYFAEAEDQPWRGEGSTTYLQWPEALPQIKRFVPGRPKFIVCLRQQTEKSVSFFIHNWRRDRYAPGQTITETVPMPIAFSPLMTGLYAPSIKRWLAEYPREDFLFLNFDWLREDPGKFVTAATDFLGVAPTTDIPDKLVNAGLPLVWEDDVLTIAKTPEPGQVKPVFTPEELHEIHAMFQDDITKTEDLTGLDLSAWREMPKFG
>NC_009956.1|WP_012187254.1|72754_73885_-|polysaccharide-pyruvyl-transferase-family-protein
MKNPYISSLYPEVPGPPFPKTQEYLQCAGNNLGNFMFCSSVRRIVRTTTHPRGDFRRLDLKTIAAECDGIVIAAANWLQPKQNYGGLADQIEKANVPAAITGIGAQSSGGKIPELLPGMLRLLKVVSERSHSISVRGPFSAEVLNHYGIQNVTVTGCPSLLWHRDHPAEITRLPRDGRVGRVTLNGTLHRFDIPKTPGKVVKLTRFTLLQAMAWGCDYVVQNERPFLQAHLGELAEDDQDSWDFLHYVFDEPDRAILKTYLERHIQAFPNIPEWMAYCANHDLVLGSRLHGVIVGLLSGTPGVLITHDNRTEEMGRFAGIPTITAEDFMSRPKIDPDAILAEADFDAFNARQKDYFRDFVAWFDANEIPHRLTVTP
>NC_009956.1|WP_012187253.1|70762_72700_+|hypothetical-protein
MTSYIMTAAQQAPDGDAKDLKQALQKAFERHAGRLPADGSEVMSSINASVAVRLFALMYMRGVQHRLMPDNESAVLCEALCKTVCEVEITDKFDDMFVSNFVLGLIVFLDLVQDDLHPDTRAGLVAKIAECRDWLSEARHRKVFGTRETEGTYAWNHSACAAAGLALSVIWTRDSQADWTDTDFHDVDFGLRRIEDYFLHGIRETGVPYEGFYYCGAVFRVLGPFDILVRKDAEVERRYRRIRDRHKRKLGQLLDWYESGTIVNQRALLSYNHSLYDAHPAVNGFLTFFRSEFEVKAGRMWSRLMAKGTSLQFVERSRDWGDNTLHEALLFLHPKGYSAPRNKVQTLLSRTEGYGLLVSEDASSRLFVKASKLLIGPHNQSDAGHVSWVCNGDAVLIDAGPGRKVRDASKKWAEYSKGTYRTEGSGASSYGHNAVLIDGRGQLPSGEGDGIEGRLSYVRQTEDFWLLGTDARAAYNKDEYNPVQVADRHVAFSKAAGAYLILIDRVVPQAPGTHRFQRLLQFADPAQVVEEDGPGRMAVTSGGTVYDLWTLSPTGPLSTVYEEEKFQMPIKTRGVLAHGVEAEDLWMYTVLAARGSAGVPTDVSLRPAEDAAFGAALQLVLEGGDTRLLALSRTTGELERISDDG
>NC_009956.1|WP_044029446.1|69591_70758_+|nucleotide-sugar-dehydrogenase
MKIAVAGIGYVGLSLSVLLAQRHEVVALDISQERVARLNAGTAPIADPEIEAYLVEKTLDLTATTDPATAFAGARFIVVATPTSYDPETNRFDTSSVEQVVETALALAPEATIVIKSTIPVGFTRALRDRLGVENILFSPEFLREGKALWDNLHPSRIVVGGAGEAARVFADLLVEGALDRDVPVLFTRPTEAEAIKLFANTYLAMRVAYFNELDSYALAHGLDSRSVIEGVCHDPRVGNHYNNPSFGYGGYCLPKDTKQLLANYAAVPQNMISAIVEANTTRKDFIAEQVLALAPKSVGIYRLVMKAGSDNFRDSSIQGIMKRLKAKGIEVTVFEPELPDETFFNSRVERDLAAFKAGADVIVANRMDDAIRDVAEKVFTRDLFGES
>NC_009956.1|WP_044029447.1|88392_94041_+|calcium-binding-protein
MTTYNVRGIAVTYDAFVGSDLPINLGSAILQLTGSDGATFSYELGTPPEPGAPPRAVLDTSEIIGARLSGEPLDSEEEFILNLRWRDGPITRETTVLVLYVEDSPEFGVDTDYIFYLGGAPLPELRTVQDWEAFDDTILSIAPPTSGPFAPGADIVIEDLPSLLGPTKTFTLQGTMIVYDDNVGFGEADDVIPAEVVFTAPEDAVFSYTVEETGDPDTPFILTLDSGQILGAIFNGNPDIEIAGELFLDVTWQDAGNVTRETTVLALFGFDPDNFFVSFDYIFYLDGHPLPDFQTVQDWEDFDDSVTAVDVPSSGPFAPETDIALADLFGVVVADAPGNIILGTEGDDNSDLPPGEDIFGTDLDDDIRALAGDDFINVSFGFDLIDGGTGFDVMNYEGSGPVFVNNTGATVIDDWNGEEAEVGPFQVLKGFGGFEGVDGLTDIEAFELSQFHDVAYLGDNADGLTFAYDLAGDDKVVAAQSGLTATTFIAGSGNDMFIGSSNPFDFLDYGEQAEDDDDAAGPAFRGIFVEFTGGGNGTATDPWDGFDMFEGIEFVGGTRFQDIFVGDETDNIFHGEGGDDIFIGGAGNDFIDGGPGETEDDEDFDTLIYANETGEAGIFADMGTGLIVDTFGDTDTVVSIDRVIGTMDEDVFVGSDFQDFIQYVGLAGEDVFFAGAAYETLRYREDDDFGALHGVYVDLAANFAIDGFGDEDTIITDDGEIDRVRGSDFNDVLATSNVGARLEGEDGDDFLKGRLGEDRLEGDAGNDTILAGAGDDQLSDGRGFDYLNGGAGWDLFFRDIGQDFEDFSWTPVVDLTEGKFFDPSEDPALFDILENIEAVSLEGNFNMTLIGDDGDNFLESDAGNDLLEGNGGDDELDGGDGDDTLNGGDGNDLLFGGEGNDGLYGDAGDDELYGEAGDDTLEGGDGDDYLNGGGGNDVINGGDGDDFIDIGGSGVATVDGGEGWDTYFVDLTGFNPGDFIYELNLITGYAGVFGNPFNSDFVADVEEILVEGDLETRLTGTNEREIFNGGDGNDEITGNGGDDELIGNDGNDTLIGGDGRDFLAGGDGDDTLDASTGAASTQGFGDYIRAGLGSNTIIGHAALFAAGEGIDISYADLAGIGGVTITVGANGTGTTVSGTPGQVDDTFTFAHYFEGSRDGDTFTGSNNADFEGWVGLDGADDFDGGGGFDVLFYDTDEAYGGAGGIIATFADGAGTVEDSWGNLDTFTDIDEIVGSQSDDVMEATGSTGVRFDGEDGDDLLIGTDADDVLRGGDGDDEIHAGLGTDEIDGGEGSDTLVTDVTGLGPDQITVDLDPLAGSQTIAGEGPGAADTLVGTENFTLTGDWDATVIGSDAANIITTGGGADDITTGLGRDTVNAGAGDDVIDASAGDLASEGFGDRIRPGLGSDTVLGSATLYAQGGGINLAYFDVSGVSGLTITVGVNGSGTVVSGTAGLVNDSFTFADVFGGSQDDDVITGTDRAEYEGFQGYGGNDVIDGRGGFDEVYYLNASGAVQINLQNGSVTGADGTDTLLNIESIFASHHDDTIQGSTARDQVNGGDGDDDINARGGFDLIDGGAGNDTINGGVGSDVLNGDGGNDTIIAGDGFDEVDGGAGDDLLKGNAGNDFIAGGAGADRIEGGIGRDMLHGGDDDDDISGAEGFDEIFGDAGDDLLRGNAGNDTIEGGAGDDRIEGGIGADTLRGGVGNDEIVASEGFDALFGEDGDDTLLGNAGNDLLEGGAGMDALFGGQGADTLRGGDGDDILRGETGADTLIGGVGDDELRGGQGGDRLSGGAGNDILVGGSGADVFVFEGGVDTITDMSLIVDRIEIDGDALGIAGLTGAQVLDQFAEAIGPSTQIVFDAANRIDLQGVTNLTQLEGLIEVI
>NC_009956.1|WP_012187264.1|94096_94681_-|hypothetical-protein
MICDITPAYGVLNTIIYKEMQRVAPAKFLFLMRDPVDRLWSQVRMGVAARAKAPEDPADFEAACLAWVRERHRTDKIENIHRADYARTLEKLENALPVETRDTQLLTLFFEDLFCQASADRICAFLGIAPVTAAPDKVANPGRPLRLPEEAEARLYDGLRAQYAFAEARFGRAGLPAVWRDRMARLECVPPPRR
>NC_009956.1|WP_012187125.1|94736_95561_-|AAA-family-ATPase
MSRQTRRTGTFLVTREHKRFVEFANAVRRNATIGLCHGRAGVGKTLSARRYANWDLIEPLITTWGRREDSDKKVYAASSRARTLFYTPPVGGSISALRKDIQPFIMRLCVCIDSYGNPKWAERPLTPLGLIELVIIDEAERLTMTGLEFLRDQFDRSDAGLILIGMPGIEKRMSQYPQLYSRIGFVHEYPPLSKDEMQFVLQRQWRKWGFGQDDADFTDDRVAAAIIRLTAGNFRLLQRLFMQIERIARINEMAAITEDVVEAAAQTLVIGNAN
>NC_009956.1|WP_157865446.1|95557_96973_-|DDE-type-integrase/transposase/recombinase
MRRFNILRQHLIDEVPLTEVARVSGIPLRTLQRWTSRYQRFGLAGLARAPRSDAGQRRLSSELVELIEGLALHKPRLSTAAIHRRIIPIVKSRDWPVPSYATIHSIVNSLDPALVTLAHDGAAAYRDRFEMIHRHRAERPNAVWQTDHTQLDLIILDTNGAPVRPWLTIVLDDHSRAVAGYAVFVGAPSAIQTALALRQAIWRKDTPSWPICGLPDVLYTDHGSDFTSKHLEQVAADLRIELVFSTVGRPQGRGKIERFFGTINTELLPELPGALSNGKPASPPRLSLGELEVAVKTFVTAVYNARKHSEIDVPPNEAWRGDGWLPRMPNSLEQLDLLLVMALKTRQVRRDGIRFQGLLYTDPTLAAYVGKTVNIRYDPRDITELRVFHRDRFLCRAVSAHHAHHTISLKDIQQARTARRKALRNEITVKSRQITEFLPKPAPPPSREKQNPVSPDAPRQKLVLYKTDKTP
>NC_009956.1|WP_012187123.1|97189_97789_+|recombinase-family-protein
MTKTRVGYARCSTDKQDLAAQRTALLALDVAEDRIYTDHGLTGTNRERPGLAQALAAVREGDTLVVPKLDRLARSVPDARAIADELEKRGVKLALGASVHDPTDPMGKMFFNILATFAEFEADLIRMRTKEGMAIARAKGRLKGKKPKLSDRRQAELRRMYDTGDYSISDLAELFDVSRPTVYRVLQRTPSADASSAAV
>NC_009956.1|WP_012187122.1|98309_100118_+|phosphomethylpyrimidine-synthase-ThiC
MKDLTPTVTTGPLPASRRVYQPGTLHPQIRVPMREIDLHPSAGEPPVTVYDSSGPYTDPSAKIAINGGLPRLRADWIAARNDIELYEGRHVRPEDNGFAEGARLVPEFPVRHKPLQAKAGRAVTQMAYARAGIITPEMEFVAIRENLGRKAAKEALVRDGQDWGAAIPDFVTPDFVREEVARGRAIIPANINHPEAEPMGIGRNFLVKINANIGNSAVTSSMEEEVEKMVWATRWGADTVMDLSTGRNIHNIRDWIIRNSAVPIGTVPLYQALEKVEGIAEDLSWEVYRDTLIEQAEQGVDYFTIHAGVRLHMIPMTIKRVTGIVSRGGSIMAKWCLHHHRESFLYEHFAEICEIARAYDVSFSLGDGLRPGSIADANDEAQFAELETLGELTQIAWKHDCQVMIEGPGHVAMHKIKENMDKQLEVCGEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWFGTAMLCYVTPKEHLGLPNRDDVKIGVITYKIAAHAADLAKGHPGAQIRDDALSRARFEFRWEDQFNLSLDPETARSMHDETLPKEAHKVAHFCSMCGPKFCSMRISHDIRAEAQKDGMAKMAEKFRKGGDLYVPLDKVKEI
>NC_009956.1|WP_157865441.1|100168_100390_+|hypothetical-protein
MRLAQRIPSQIVMHVAASVLLAANYIEVMHRIQWEFSRSTNARFLHLRKPPRPTPPKTPFKTQTVVEGFLACC
>NC_009956.1|WP_012187121.1|100521_101904_-|IS1182-family-transposase
MMGPRQEAQAALFYEFSLEEHVPQDHLLRSIDRHLDLSSIRGHLADFYSHTGRPSVDPELMIRMLLVGYCFGIRSERRLCEEVHLNLAYRWFCRLELTDRIPDHSTFSKNRHGRFRDSDLLRHVFEATVARCIEEGLVGGQGFAVDASLISADVQKQNSSNPEGWAAREIDPTDAPRAVREYLDTLDDEAFGAATTAKPKFTAHADPASQWTAARKGPAFFAYSDNYLIDTDHGIIVDVDASRSNKTAEVGAMRKMLDRTEDRFGVKPDWIAADTAYGSSDNLVWLALKRQILPFIPVFDKGERTDGTFSRSDFTWDDENDRYICPSGKEMRHTWRTYSDPARNAPAWKARRYRTRKSDCTGCALKAKCCPNSEVRAIHREKYEIVRDFARQCTASEYNPTAQRRRKKVEMLFAHLKRILGLGRLRLRGPCGVQDEFTLAATAQNLRKLAKLKPMVPATE
>NC_009956.1|WP_012187265.1|102304_103117_+|hypothetical-protein
MSIDYNDLQSKGVDIAAAINETFLNKFATSHHTANPSLYSGKQRFTQFDNDIEIAFKANTPLTFDFSRQVSRARFKRLWLQHLKIKGVPESTKLDEVLTTPPNVSLGCESVIFEVKIFDGKSNDVLLTVDFDWSLLTLAAISLDDGKLSMEPVRIGFSQRMAIIEEAIAARVSSKLSTLGVQQKPERPATFGDPSDPVWCAKLEKMIILLLNQVLAVQIANFIAEFELPRAIEVADGIAIDARLFGDTQRQSSGRRSHYRATDWHGSSIV
>NC_009956.1|WP_012187266.1|103400_103925_+|hypothetical-protein
MKLDRLIRAEAEWWLRVENAKAGVVTGGVQLEADVAVGGGLKVSHFNIDPKKFGQWKDYGVGIELFPIPNFGVQAFPTFPASGVFINGRLLTTGIGLRFLGLPSWANDLISWITGFLTAPLLAIIRAVIARFRIRIMKYPKHFPGTGLEWTPNLNERLENVGPYLLLSGDPAFE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009956_1	1.1\|87681\|30\|NC_009956\|CRISPRCasFinder	87681-87710	30	NC_009956	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence	87681-87710	0	1.0
NC_009956_1	1.2\|87735\|30\|NC_009956\|CRISPRCasFinder	87735-87764	30	NC_009956	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence	87735-87764	0	1.0
NC_009956_1	1.3\|87789\|30\|NC_009956\|CRISPRCasFinder	87789-87818	30	NC_009956	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence	87789-87818	0	1.0
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NC_009956	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence	87951-87980	0	1.0
NC_009956_1	1.2\|87735\|30\|NC_009956\|CRISPRCasFinder	87735-87764	30	NZ_CP026330	Acidithiobacillus caldus strain MTH-04 plasmid p2, complete sequence	8396-8425	5	0.833
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP025614	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed2, complete sequence	43172-43201	5	0.833
NC_009956_1	1.3\|87789\|30\|NC_009956\|CRISPRCasFinder	87789-87818	30	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	134457-134486	6	0.8
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP035420	Leisingera sp. NJS204 plasmid unnamed3, complete sequence	24684-24713	6	0.8
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	283005-283034	6	0.8
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP025431	Paracoccus zhejiangensis strain J6 plasmid pPZ01, complete sequence	253513-253542	6	0.8
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP049814	Monaibacterium sp. ALG8 plasmid unnamed3, complete sequence	135393-135422	6	0.8
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	1395429-1395458	6	0.8
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP021819	Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence	428192-428221	6	0.8
NC_009956_1	1.1\|87681\|30\|NC_009956\|CRISPRCasFinder	87681-87710	30	NZ_CP007517	Rubrobacter radiotolerans strain RSPS-4 plasmid 3, complete sequence	9182-9211	7	0.767
NC_009956_1	1.3\|87789\|30\|NC_009956\|CRISPRCasFinder	87789-87818	30	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	1518608-1518637	7	0.767
NC_009956_1	1.3\|87789\|30\|NC_009956\|CRISPRCasFinder	87789-87818	30	NZ_AP014687	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6c, complete sequence	104849-104878	7	0.767
NC_009956_1	1.3\|87789\|30\|NC_009956\|CRISPRCasFinder	87789-87818	30	NZ_CP053575	Citrobacter sp. TSA-1 plasmid unnamed2, complete sequence	16084-16113	7	0.767
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP042821	Octadecabacter sp. SW4 plasmid pow42, complete sequence	77365-77394	7	0.767
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP025431	Paracoccus zhejiangensis strain J6 plasmid pPZ01, complete sequence	98769-98798	7	0.767
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	149330-149359	7	0.767
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	258203-258232	7	0.767
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NC_015952	Streptomyces violaceusniger Tu 4113 plasmid pSTRVI02, complete sequence	39802-39831	7	0.767
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	263372-263401	7	0.767
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	785240-785269	7	0.767
NC_009956_1	1.3\|87789\|30\|NC_009956\|CRISPRCasFinder	87789-87818	30	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1665886-1665915	8	0.733
NC_009956_1	1.3\|87789\|30\|NC_009956\|CRISPRCasFinder	87789-87818	30	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	466507-466536	8	0.733
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP053858	Rhizobium pusense strain 76 plasmid pR76, complete sequence	49162-49191	8	0.733
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP016368	Phaeobacter porticola strain P97 plasmid pP97_d, complete sequence	32519-32548	8	0.733
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP038235	Leisingera sp. NJS201 plasmid unnamed1, complete sequence	10431-10460	8	0.733
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	35354-35383	8	0.733
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	108613-108642	8	0.733
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	161857-161886	8	0.733
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	800019-800048	8	0.733
NC_009956_1	1.1\|87681\|30\|NC_009956\|CRISPRCasFinder	87681-87710	30	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1717465-1717494	9	0.7
NC_009956_1	1.1\|87681\|30\|NC_009956\|CRISPRCasFinder	87681-87710	30	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	373114-373143	9	0.7
NC_009956_1	1.1\|87681\|30\|NC_009956\|CRISPRCasFinder	87681-87710	30	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	448064-448093	9	0.7
NC_009956_1	1.2\|87735\|30\|NC_009956\|CRISPRCasFinder	87735-87764	30	NZ_LR594667	Variovorax sp. SRS16 plasmid 2	19692-19721	9	0.7
NC_009956_1	1.2\|87735\|30\|NC_009956\|CRISPRCasFinder	87735-87764	30	NZ_LR594690	Variovorax sp. WDL1 plasmid 2	19686-19715	9	0.7
NC_009956_1	1.2\|87735\|30\|NC_009956\|CRISPRCasFinder	87735-87764	30	NZ_LR594672	Variovorax sp. PBL-E5 plasmid 2	19692-19721	9	0.7
NC_009956_1	1.2\|87735\|30\|NC_009956\|CRISPRCasFinder	87735-87764	30	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	818468-818497	9	0.7
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	MW161464	Cutibacterium phage PAVL20, complete genome	4863-4892	9	0.7
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	MW161468	Cutibacterium phage PAVL45, complete genome	4863-4892	9	0.7
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NC_027295	Propionibacterium phage PHL199M00, complete genome	12962-12991	9	0.7
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	MW161461	Cutibacterium phage FD1, complete genome	4863-4892	9	0.7
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	MW161462	Cutibacterium phage FD2, complete genome	4863-4892	9	0.7
NC_009956_2	2.1\|87951\|30\|NC_009956\|CRISPRCasFinder	87951-87980	30	NZ_CP024200	Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence	94949-94978	9	0.7

1. spacer 1.1|87681|30|NC_009956|CRISPRCasFinder matches to NC_009956 (Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence) position: , mismatch: 0, identity: 1.0

aatggcggggtcgggttcgactggctcgac	CRISPR spacer
aatggcggggtcgggttcgactggctcgac	Protospacer
******************************

2. spacer 1.2|87735|30|NC_009956|CRISPRCasFinder matches to NC_009956 (Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence) position: , mismatch: 0, identity: 1.0

accggactggaagggttcgacagcctcttt	CRISPR spacer
accggactggaagggttcgacagcctcttt	Protospacer
******************************

3. spacer 1.3|87789|30|NC_009956|CRISPRCasFinder matches to NC_009956 (Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence) position: , mismatch: 0, identity: 1.0

tcgggcaatgcgggtaacgacctgatcgag	CRISPR spacer
tcgggcaatgcgggtaacgacctgatcgag	Protospacer
******************************

4. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NC_009956 (Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence) position: , mismatch: 0, identity: 1.0

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
cagggcggtgagggcaatgaccggctggcc	Protospacer
******************************

5. spacer 1.2|87735|30|NC_009956|CRISPRCasFinder matches to NZ_CP026330 (Acidithiobacillus caldus strain MTH-04 plasmid p2, complete sequence) position: , mismatch: 5, identity: 0.833

accgga---ctggaagggttcgacagcctcttt	CRISPR spacer
---ggaattctggaagggttcaacagcctcatt	Protospacer
   ***   ************.******** **

6. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP025614 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.833

cagggcg-gtgagggcaatgaccggctggcc	CRISPR spacer
-agcctgcgtgaggccaatgaccggctggcc	Protospacer
 **  .* ****** ****************

7. spacer 1.3|87789|30|NC_009956|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

---tcgggcaatgcgggtaacgacctgatcgag	CRISPR spacer
atctcg---aatgccggtaacgaccagatcgat	Protospacer
   ***   ***** ********** ******

8. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP035420 (Leisingera sp. NJS204 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
gacggcggcgagggcgatgaccggctgttc	Protospacer
 * *****.******.*********** .*

9. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 6, identity: 0.8

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
gagggcggtgacggcgatgaccggctcgat	Protospacer
 ********** ***.********** * .

10. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP025431 (Paracoccus zhejiangensis strain J6 plasmid pPZ01, complete sequence) position: , mismatch: 6, identity: 0.8

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
cagggcggcgagggcaatgactccctgaac	Protospacer
********.************.  ***. *

11. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP049814 (Monaibacterium sp. ALG8 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
agcggcggcgagggcaatgacctgctggac	Protospacer
 . *****.************* ***** *

12. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.8

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
aatggcggtgacggcaatgatcggctgagc	Protospacer
 * ******** ********.******. *

13. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP021819 (Sinorhizobium meliloti strain M162 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.8

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
aatggcggtgacggcaatgatcggctgagc	Protospacer
 * ******** ********.******. *

14. spacer 1.1|87681|30|NC_009956|CRISPRCasFinder matches to NZ_CP007517 (Rubrobacter radiotolerans strain RSPS-4 plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.767

aatggcggggtcgggttcgactggctcgac	CRISPR spacer
ggcggcggggtcgggctcgacaggctcggg	Protospacer
...************.***** ******.

15. spacer 1.3|87789|30|NC_009956|CRISPRCasFinder matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 7, identity: 0.767

tcgggcaatgcgggtaacgacctgatcgag	CRISPR spacer
tcgggcgatgcgggtaacgacctactactc	Protospacer
******.****************. *

16. spacer 1.3|87789|30|NC_009956|CRISPRCasFinder matches to NZ_AP014687 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6c, complete sequence) position: , mismatch: 7, identity: 0.767

tcgggcaatgcgggtaacgacctgatcgag	CRISPR spacer
tcgggcaatgcggttgacgacctgcgtgtt	Protospacer
************* *.********  .*

17. spacer 1.3|87789|30|NC_009956|CRISPRCasFinder matches to NZ_CP053575 (Citrobacter sp. TSA-1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

tcgggcaatgcgggtaacgacctgatcgag	CRISPR spacer
cagggtaaagcgggtaacgacctgagtcag	Protospacer
. ***.** **************** . **

18. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP042821 (Octadecabacter sp. SW4 plasmid pow42, complete sequence) position: , mismatch: 7, identity: 0.767

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
ggcggcggtgaaggcaatgacctgctggat	Protospacer
 . ********.********** ***** .

19. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP025431 (Paracoccus zhejiangensis strain J6 plasmid pPZ01, complete sequence) position: , mismatch: 7, identity: 0.767

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
cgcggcgatgcgggcaatgaccggcttgag	Protospacer
*. ****.** *************** *

20. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.767

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
tccggcggcgcgggcaatgaccggctgtac	Protospacer
.  *****.* ****************  *

21. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 7, identity: 0.767

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
tccggcggcgcgggcaatgaccggctgtac	Protospacer
.  *****.* ****************  *

22. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NC_015952 (Streptomyces violaceusniger Tu 4113 plasmid pSTRVI02, complete sequence) position: , mismatch: 7, identity: 0.767

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
gagggcggtgagggcagtgatcgggtccac	Protospacer
 ***************.***.*** *   *

23. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.767

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
gtgggcggtgagcgcgatgaccggcacacc	Protospacer
  ********** **.*********  .**

24. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 7, identity: 0.767

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
gtgggcggtgagcgcgatgaccggcacacc	Protospacer
  ********** **.*********  .**

25. spacer 1.3|87789|30|NC_009956|CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgggcaatgcgggtaacgacctgatcgag	CRISPR spacer
cattccgatgcgggcgacgacctgatcgag	Protospacer
.    *.*******..**************

26. spacer 1.3|87789|30|NC_009956|CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

tcgggcaatgcgggtaacgacctgatcgag	CRISPR spacer
cattccgatgcgggcgacgacctgatcgag	Protospacer
.    *.*******..**************

27. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP053858 (Rhizobium pusense strain 76 plasmid pR76, complete sequence) position: , mismatch: 8, identity: 0.733

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
ggaggcggtgagggcaatgatcggcatggg	Protospacer
 ..*****************.****  *

28. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP016368 (Phaeobacter porticola strain P97 plasmid pP97_d, complete sequence) position: , mismatch: 8, identity: 0.733

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
agcggcggtcagggcagtgaccggctgcaa	Protospacer
 . ****** ******.**********

29. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP038235 (Leisingera sp. NJS201 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
tatggcggcgacggcaatgaccggctttat	Protospacer
.* *****.** **************   .

30. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 8, identity: 0.733

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
tccggcggcgcgggcaatgaccggctttac	Protospacer
.  *****.* ***************   *

31. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 8, identity: 0.733

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
gtcgttgatgaggtcaatgaccggctggcg	Protospacer
   * .*.***** ***************

32. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
tccggcggcgcgggcaatgaccggctttac	Protospacer
.  *****.* ***************   *

33. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 8, identity: 0.733

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
gtcgttgatgaggtcaatgaccggctggcg	Protospacer
   * .*.***** ***************

34. spacer 1.1|87681|30|NC_009956|CRISPRCasFinder matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.7

aatggcggggtcgggttcgactggctcgac	CRISPR spacer
tgcggcggcgccgggttcgactggctgctg	Protospacer
 ..***** *.***************

35. spacer 1.1|87681|30|NC_009956|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

aatggcggggtcgggttcgactggctcgac	CRISPR spacer
gcgttcatggtcgggttcgactgggtcgag	Protospacer
.    *. **************** ****

36. spacer 1.1|87681|30|NC_009956|CRISPRCasFinder matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 9, identity: 0.7

aatggcggggtcgggttcgactggctcgac	CRISPR spacer
tgcggcggcgccgggttcgactggctgctg	Protospacer
 ..***** *.***************

37. spacer 1.2|87735|30|NC_009956|CRISPRCasFinder matches to NZ_LR594667 (Variovorax sp. SRS16 plasmid 2) position: , mismatch: 9, identity: 0.7

accggactggaagggttcgacagcctcttt	CRISPR spacer
gtagtactggaaggcttcgacagcctgcgg	Protospacer
.. * ********* *********** .

38. spacer 1.2|87735|30|NC_009956|CRISPRCasFinder matches to NZ_LR594690 (Variovorax sp. WDL1 plasmid 2) position: , mismatch: 9, identity: 0.7

accggactggaagggttcgacagcctcttt	CRISPR spacer
gtagtactggaaggcttcgacagcctgcgg	Protospacer
.. * ********* *********** .

39. spacer 1.2|87735|30|NC_009956|CRISPRCasFinder matches to NZ_LR594672 (Variovorax sp. PBL-E5 plasmid 2) position: , mismatch: 9, identity: 0.7

accggactggaagggttcgacagcctcttt	CRISPR spacer
gtagtactggaaggcttcgacagcctgcgg	Protospacer
.. * ********* *********** .

40. spacer 1.2|87735|30|NC_009956|CRISPRCasFinder matches to NZ_LR594660 (Variovorax sp. PBL-H6 plasmid 2) position: , mismatch: 9, identity: 0.7

accggactggaagggttcgacagcctcttt	CRISPR spacer
gtagtactggaaggcttcgacagcctgcgg	Protospacer
.. * ********* *********** .

41. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to MW161464 (Cutibacterium phage PAVL20, complete genome) position: , mismatch: 9, identity: 0.7

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
ggccgcggtgagggcaaggatcggctgttt	Protospacer
 .  ************* **.****** ..

42. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to MW161468 (Cutibacterium phage PAVL45, complete genome) position: , mismatch: 9, identity: 0.7

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
ggccgcggtgagggcaaggatcggctgttt	Protospacer
 .  ************* **.****** ..

43. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NC_027295 (Propionibacterium phage PHL199M00, complete genome) position: , mismatch: 9, identity: 0.7

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
ggccgcggtgagggcaaggatcggctgttt	Protospacer
 .  ************* **.****** ..

44. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to MW161461 (Cutibacterium phage FD1, complete genome) position: , mismatch: 9, identity: 0.7

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
ggccgcggtgagggcaaggatcggctgttt	Protospacer
 .  ************* **.****** ..

45. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to MW161462 (Cutibacterium phage FD2, complete genome) position: , mismatch: 9, identity: 0.7

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
ggccgcggtgagggcaaggatcggctgttt	Protospacer
 .  ************* **.****** ..

46. spacer 2.1|87951|30|NC_009956|CRISPRCasFinder matches to NZ_CP024200 (Thalassospira marina strain CSC3H3 plasmid pCSC3H3, complete sequence) position: , mismatch: 9, identity: 0.7

cagggcggtgagggcaatgaccggctggcc	CRISPR spacer
tttggtggtgcgggcaatgaccggctttat	Protospacer
.  **.**** ***************   .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12124 : 44979

Ochrobactrum_phage(18.18%)

integrase,transposase

attL 8999:9013|attR 45898:45912

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
8999:9013	attL	NA	NA	NA	NA
WP_012187121.1\|12124_13507_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_157865441.1\|13638_13860_-	hypothetical protein	NA	NA	NA	NA
WP_012187122.1\|13910_15719_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_012187123.1\|16239_16839_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.3e-26	38.5
WP_157865446.1\|17055_18471_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4JGQ6	uncultured_Caudovirales_phage	3.3e-15	26.1
WP_012187125.1\|18467_19292_+	AAA family ATPase	A0A0N7ACA6	Bacillus_phage	2.4e-05	25.0
WP_012187377.1\|19414_19981_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	7.7e-40	52.2
WP_012187378.1\|19967_20222_+	WGR domain-containing protein	NA	NA	NA	NA
WP_044029527.1\|20320_20572_+	hypothetical protein	NA	NA	NA	NA
WP_012187380.1\|20558_20852_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012187381.1\|20857_21250_+	hypothetical protein	NA	NA	NA	NA
WP_085930394.1\|21411_22511_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.2e-42	38.9
WP_157865457.1\|22570_23002_-	hypothetical protein	NA	NA	NA	NA
WP_044029529.1\|23337_23529_+	hypothetical protein	NA	NA	NA	NA
WP_012187383.1\|24187_25219_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_085930431.1\|25326_26084_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.8e-10	35.5
WP_012187387.1\|30487_31699_-	replication initiation protein RepC	L7TKN6	Rhizobium_phage	2.4e-22	27.8
WP_083768441.1\|31913_32843_-	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	2.1e-18	29.7
WP_012187389.1\|32826_34020_-	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	4.8e-116	54.4
WP_012187390.1\|34154_35036_-	recombinase family protein	A0A0C4UR34	Shigella_phage	2.6e-34	56.2
WP_085930432.1\|35268_36330_+	hypothetical protein	NA	NA	NA	NA
WP_162017736.1\|36611_36962_-\|transposase	transposase	A0A0N7C1Z2	Escherichia_phage	1.0e-10	55.2
WP_012187393.1\|37699_37960_+	hypothetical protein	NA	NA	NA	NA
WP_012187394.1\|39317_39818_+	hypothetical protein	NA	NA	NA	NA
WP_012187395.1\|39814_41992_+	hypothetical protein	NA	NA	NA	NA
WP_157865458.1\|42018_44979_+\|integrase	site-specific integrase	NA	NA	NA	NA
45898:45912	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_009955

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

29690 : 83255

Bacillus_phage(42.86%)

integrase,transposase

attL 77911:77927|attR 86642:86658

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012187142.1\|29690_30563_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.0e-31	33.2
WP_012187141.1\|30575_31778_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_157865438.1\|32222_33146_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012187170.1\|33246_35727_+	CoA transferase	NA	NA	NA	NA
WP_012187169.1\|35745_37389_+	hypothetical protein	NA	NA	NA	NA
WP_012187168.1\|37538_37766_-	hypothetical protein	NA	NA	NA	NA
WP_012187167.1\|37935_38193_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044029425.1\|38317_38578_-	hypothetical protein	NA	NA	NA	NA
WP_012187165.1\|38779_39133_+	hypothetical protein	NA	NA	NA	NA
WP_012187164.1\|39176_39797_+	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	8.2e-19	52.9
WP_012187163.1\|39793_40087_+	TrbC/VirB2 family protein	NA	NA	NA	NA
WP_008327373.1\|40079_40358_+	type IV secretion protein VirB3	NA	NA	NA	NA
WP_012187162.1\|40347_42723_+	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA
WP_044029367.1\|42942_44031_+	lytic transglycosylase domain-containing protein	A0A1P8CWQ1	Bacillus_phage	2.2e-27	57.7
WP_012187159.1\|44030_44840_+	conjugal transfer protein TraF	NA	NA	NA	NA
WP_012187158.1\|44854_45511_+	type IV secretion system protein	NA	NA	NA	NA
WP_012187157.1\|45512_46208_+	TrbG/VirB9 family P-type conjugative transfer protein	NA	NA	NA	NA
WP_012187156.1\|46204_47584_+	conjugal transfer protein	NA	NA	NA	NA
WP_012187155.1\|47588_48575_+	Flp pilus assembly complex ATPase component TadA	NA	NA	NA	NA
WP_012187154.1\|48571_48766_+	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_012187153.1\|48762_49173_+	hypothetical protein	NA	NA	NA	NA
WP_012187152.1\|49185_50262_+	type IV secretion system protein	NA	NA	NA	NA
WP_012187151.1\|50622_51540_+	hypothetical protein	NA	NA	NA	NA
WP_012187150.1\|51855_53406_-	DNA polymerase I	NA	NA	NA	NA
WP_157865444.1\|53398_54973_-	hypothetical protein	NA	NA	NA	NA
WP_012187148.1\|55360_57364_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_012187147.1\|57372_59706_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_012187146.1\|59692_60274_-\|transposase	transposase	NA	NA	NA	NA
WP_012187145.1\|60837_61044_-	hypothetical protein	NA	NA	NA	NA
WP_012187143.1\|61582_62512_-	DUF2493 domain-containing protein	A0A291L9X7	Bordetella_phage	6.3e-07	33.9
WP_012187142.1\|63297_64170_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	2.0e-31	33.2
WP_012187141.1\|64182_65385_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_050757916.1\|65752_67048_-	MgtC/SapB family protein	NA	NA	NA	NA
WP_012187139.1\|67146_67365_+	antitoxin MazE family protein	NA	NA	NA	NA
WP_044029371.1\|67361_67688_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_157865439.1\|67855_68140_-	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_044029373.1\|68444_68645_-	hypothetical protein	NA	NA	NA	NA
WP_157865445.1\|68731_69067_-	hypothetical protein	NA	NA	NA	NA
WP_012187135.1\|69100_69835_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_157865440.1\|70078_70765_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_012187133.1\|70772_71738_-	calcium/sodium antiporter	NA	NA	NA	NA
WP_157059045.1\|71863_72214_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012187131.1\|72649_73927_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_162017730.1\|74022_74892_-	hypothetical protein	NA	NA	NA	NA
77911:77927	attL	NA	NA	NA	NA
WP_012187125.1\|81018_81843_-	AAA family ATPase	A0A0N7ACA6	Bacillus_phage	2.4e-05	25.0
WP_157865446.1\|81839_83255_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4JGQ6	uncultured_Caudovirales_phage	3.3e-15	26.1
86642:86658	attR	NA	NA	NA	NA

DBSCAN-SWA_2

86803 : 145256

Burkholderia_virus(11.11%)

integrase,transposase

attL 83679:83696|attR 155722:155739

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
83679:83696	attL	NA	NA	NA	NA
WP_012187121.1\|86803_88186_-\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_012187120.1\|88434_89082_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	5.3e-37	50.8
WP_012187119.1\|89185_90118_+	hypothetical protein	NA	NA	NA	NA
WP_012187118.1\|90128_90698_+	biotin transporter BioY	NA	NA	NA	NA
WP_012187117.1\|90713_91379_+	ABC transporter ATP-binding protein	A0A2H4UUX5	Bodo_saltans_virus	1.1e-16	29.6
WP_012187116.1\|91375_91969_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_050757918.1\|91965_92397_-	DUF1284 domain-containing protein	NA	NA	NA	NA
WP_012187115.1\|92393_92966_-	biotin transporter BioY	NA	NA	NA	NA
WP_012187113.1\|93568_94297_-	DUF736 family protein	NA	NA	NA	NA
WP_012187112.1\|94421_94724_-	hypothetical protein	NA	NA	NA	NA
WP_012187111.1\|94824_95286_-	hypothetical protein	A0A1B1IUL8	uncultured_Mediterranean_phage	5.1e-34	58.6
WP_012187110.1\|95287_95674_-	hypothetical protein	NA	NA	NA	NA
WP_157865447.1\|97785_100266_+	DEAD/DEAH box helicase family protein	A0A2K9R7J3	Dishui_lake_phycodnavirus	2.5e-34	30.5
WP_012187107.1\|100304_101309_-\|integrase	tyrosine-type recombinase/integrase	A0A2K9VH72	Gordonia_phage	5.8e-14	29.2
WP_012187106.1\|101305_102217_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012187105.1\|102213_103740_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.1e-11	25.1
WP_012187104.1\|103863_106374_-	methyltransferase	A0A1X9HW54	Ruegeria_phage	4.2e-13	30.5
WP_153218031.1\|106641_106788_-	hypothetical protein	NA	NA	NA	NA
WP_012187103.1\|107196_108084_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.3e-30	32.4
WP_012187102.1\|108096_109296_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_012187101.1\|109816_110656_-	sterol desaturase family protein	NA	NA	NA	NA
WP_076612098.1\|112170_113405_-\|transposase	IS3-like element ISDsh1 family transposase	Q8W6R2	Burkholderia_virus	3.0e-105	68.8
WP_162017732.1\|113810_114608_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012187098.1\|114609_115872_-	TRAP transporter large permease	NA	NA	NA	NA
WP_157865448.1\|115871_116435_-	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_012187096.1\|116502_117483_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_012187095.1\|117526_118285_-	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	2.6e-19	31.5
WP_012187094.1\|118468_118945_+	TIGR02444 family protein	NA	NA	NA	NA
WP_012187093.1\|118925_119519_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_012187092.1\|119635_120550_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012187091.1\|120677_122087_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_012187090.1\|122125_123583_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_044029386.1\|123687_124554_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_012187088.1\|124653_127605_+	molybdopterin-dependent oxidoreductase	A0A0P0I429	Acinetobacter_phage	9.9e-30	23.4
WP_012187087.1\|127601_128429_+	carbon monoxide dehydrogenase	NA	NA	NA	NA
WP_012187086.1\|128416_128926_+	(2Fe-2S)-binding protein	A0A0P0IVM8	Acinetobacter_phage	3.3e-18	40.4
WP_012187085.1\|128918_130454_+	AMP-binding protein	A0A1V0SBX8	Catovirus	3.3e-08	39.3
WP_012187084.1\|130480_131284_+	crotonase	NA	NA	NA	NA
WP_012187083.1\|131325_132480_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012187082.1\|132500_133385_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_012187081.1\|133377_134406_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_012187080.1\|134402_135143_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.6e-15	26.0
WP_044029389.1\|135147_135846_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.1e-15	29.3
WP_012187078.1\|136656_137175_-	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA
WP_012187077.1\|137171_137498_-	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA
WP_012187076.1\|137624_138278_-	hypothetical protein	NA	NA	NA	NA
WP_012187075.1\|138277_138871_-	hypothetical protein	NA	NA	NA	NA
WP_012187074.1\|138943_140926_-	ParB N-terminal domain-containing protein	A0A0F7L836	uncultured_marine_virus	7.9e-07	34.2
WP_157865442.1\|141319_142120_+\|transposase	transposase	NA	NA	NA	NA
WP_076612098.1\|142348_143583_-\|transposase	IS3-like element ISDsh1 family transposase	Q8W6R2	Burkholderia_virus	3.0e-105	68.8
WP_012187070.1\|143894_145256_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.3e-109	46.4
155722:155739	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_009957

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

52922 : 98989

uncultured_Mediterranean_phage(12.5%)

transposase,integrase

attL 67086:67103|attR 101117:101134

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012187339.1\|52922_53516_-\|transposase	transposase	NA	NA	NA	NA
WP_007120662.1\|54077_54284_-	hypothetical protein	NA	NA	NA	NA
WP_012187340.1\|54823_55849_-	hypothetical protein	NA	NA	NA	NA
WP_012187341.1\|55972_56902_-	DUF2493 domain-containing protein	A0A291L9X7	Bordetella_phage	6.3e-07	33.9
WP_012187342.1\|57593_58274_+	hypothetical protein	A0A291AUP1	Sinorhizobium_phage	2.6e-42	41.6
WP_012187343.1\|58263_58851_+	hypothetical protein	NA	NA	NA	NA
WP_012187344.1\|58777_60277_+	DNA polymerase Y family protein	NA	NA	NA	NA
WP_012187345.1\|60273_63624_+	DNA polymerase III subunit alpha	A0A0K1Y8J9	Streptomyces_phage	1.4e-75	27.2
WP_012187346.1\|63704_64433_-	DUF736 family protein	NA	NA	NA	NA
WP_012187347.1\|64557_64860_-	hypothetical protein	NA	NA	NA	NA
WP_012187348.1\|64960_65422_-	hypothetical protein	A0A1B1IUL8	uncultured_Mediterranean_phage	1.1e-33	58.6
WP_012187349.1\|65423_65810_-	hypothetical protein	NA	NA	NA	NA
67086:67103	attL	NA	NA	NA	NA
WP_012187105.1\|67840_69367_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.1e-11	25.1
WP_012187106.1\|69363_70275_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012187107.1\|70271_71276_+\|integrase	tyrosine-type recombinase/integrase	A0A2K9VH72	Gordonia_phage	5.8e-14	29.2
WP_157865447.1\|71314_73795_-	DEAD/DEAH box helicase family protein	A0A2K9R7J3	Dishui_lake_phycodnavirus	2.5e-34	30.5
WP_012187351.1\|73999_76510_-	methyltransferase	A0A1X9HW54	Ruegeria_phage	5.5e-13	30.4
WP_153218031.1\|76779_76926_-	hypothetical protein	NA	NA	NA	NA
WP_083768438.1\|77302_78169_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012187353.1\|78319_79039_+	hypothetical protein	NA	NA	NA	NA
WP_012187354.1\|79360_79879_-	type II toxin-antitoxin system YhaV family toxin	NA	NA	NA	NA
WP_005668772.1\|79875_80202_-	type II toxin-antitoxin system PrlF family antitoxin	NA	NA	NA	NA
WP_012187355.1\|80328_80982_-	hypothetical protein	NA	NA	NA	NA
WP_012187356.1\|80981_81674_-	hypothetical protein	NA	NA	NA	NA
WP_012187357.1\|81748_83731_-	ParB/RepB/Spo0J family partition protein	A0A0F7L836	uncultured_marine_virus	3.9e-06	32.9
WP_012187358.1\|83887_84277_-	DUF3768 domain-containing protein	NA	NA	NA	NA
WP_012187359.1\|84364_84574_-	hypothetical protein	NA	NA	NA	NA
WP_012187360.1\|84597_85536_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	2.7e-42	35.7
WP_012187361.1\|85576_86062_-	hypothetical protein	NA	NA	NA	NA
WP_012187362.1\|86340_87543_+	Fic family protein	NA	NA	NA	NA
WP_012187363.1\|87674_88910_-	replication initiation protein RepC	L7TKN6	Rhizobium_phage	1.2e-16	28.0
WP_012187364.1\|89087_90104_-	plasmid partitioning protein RepB	A0A240F4U0	Ochrobactrum_phage	2.6e-22	39.9
WP_012187365.1\|90100_91288_-	plasmid partitioning protein RepA	A0A240F4U1	Ochrobactrum_phage	6.2e-124	55.9
WP_012187366.1\|91601_91829_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_012187367.1\|91818_92214_+	PIN domain-containing protein	NA	NA	NA	NA
WP_012187368.1\|92197_93094_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.7e-33	54.9
WP_012187369.1\|93152_94271_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012187056.1\|94397_95282_+	DUF1403 family protein	NA	NA	NA	NA
WP_012187055.1\|95284_95902_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.1e-13	26.9
WP_012187054.1\|95951_96215_+	WGR domain-containing protein	NA	NA	NA	NA
WP_012187053.1\|96284_97403_+	Fic family protein	NA	NA	NA	NA
WP_012187052.1\|97399_98122_-	hypothetical protein	NA	NA	NA	NA
WP_085930427.1\|98232_98989_+\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	3.8e-10	35.5
101117:101134	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NC_009952

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_009952_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009952_1

17751-17907

Orphan

Consensus_repeat	Method
AAGGGCATCGCGCCGCGTGCGGTAAAGCGGTTTTCCTCGAAAACCTGCGACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009952_1

>merge|NC_009952|1|17751-17907|CRISPRCasFinder
AAGGGCATCGCGCCGCGTGCGGTAAAGCGGTTTTCCTCGAAAACCTGCGACCGGCACCCGGTTGCATCGGAAGAGCCTCCGGCGGTGATATCGGCGTGTGCCCGAAGGGCATCGCGCCGCGTGCGGGAAAGCGGTTTTCCTCGAAAACCTGCGACCG

>NC_009952|1|1|17751-17907|CRISPRCasFinder
AAGGGCATCGCGCCGCGTGCGGTAAAGCGGTTTTCCTCGAAAACCTGCGACCG	GCACCCGGTTGCATCGGAAGAGCCTCCGGCGGTGATATCGGCGTGTGCCCG
AAGGGCATCGCGCCGCGTGCGGGAAAGCGGTTTTCCTCGAAAACCTGCGACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009952.1\|WP_012176704.1\|26399_26954_+\|hypothetical-protein	unknown	unknown	unknown
NC_009952.1\|WP_012176701.1\|22865_24683_+\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NC_009952.1\|WP_012176707.1\|29142_29814_+\|cupin	unknown	unknown	gnl\|CDD\|380437
NC_009952.1\|WP_157865162.1\|10219_10693_+\|hypothetical-protein	unknown	unknown	unknown
NC_009952.1\|WP_012176693.1\|12776_13124_+\|hypothetical-protein	unknown	unknown	unknown
NC_009952.1\|WP_044028146.1\|25972_26266_-\|hypothetical-protein	unknown	unknown	unknown
NC_009952.1\|WP_044028144.1\|12120_12567_-\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|367619
NC_009952.1\|WP_012176699.1\|19515_20166_-\|DUF998-domain-containing-protein	unknown	unknown	gnl\|CDD\|377627
NC_009952.1\|WP_012176697.1\|15471_17727_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NC_009952.1\|WP_157865358.1\|10787_11255_+\|hypothetical-protein	unknown	unknown	unknown
NC_009952.1\|WP_012176706.1\|27712_28819_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223931
NC_009952.1\|WP_012176694.1\|13128_14268_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NC_009952.1\|WP_012176695.1\|14264_14693_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NC_009952.1\|WP_012176698.1\|18178_19426_+\|lytic-murein-transglycosylase	unknown	unknown	gnl\|CDD\|372592
NC_009952.1\|WP_012176691.1\|11746_11953_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NC_009952.1\|WP_012176700.1\|20325_22629_-\|multicopper-oxidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|259922
NC_009952.1\|WP_083768341.1\|25296_26001_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226233
NC_009952.1\|WP_012176696.1\|14692_15271_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|275102
NC_009952.1\|WP_012176705.1\|26997_27618_+\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|234574
NC_009952.1\|WP_012176689.1\|9027_9855_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996

Protein	Function_ID	Function_description	E-value
NC_009952.1\|WP_012176701.1\|22865_24683_+\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NC_009952.1\|WP_012176707.1\|29142_29814_+\|cupin	gnl\|CDD\|380437	cd20303, cupin_ChrR_1, Marinobacter hydrocarbonoclasticus anti-ECFsigma factor ChrR, and similar proteins; 2 heterologous tandem repeats of cupin domain. This family contains bacterial anti-sigma factor such as ChrR from Marinobacter hydrocarbonoclasticus. Anti-sigma factor ChrR is a member of the ZAS (Zn2+ anti-sigma) subfamily of group IV anti-sigmas. It inhibits transcriptional activity by binding to the ECF sigma factor E (sigmaE), an essential factor to mount a transcriptional response to a singlet oxygen and for viability when carotenoids are limiting. This protein family likely contains two distinct homologous functional domains belonging to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.72359e-58
NC_009952.1\|WP_044028144.1\|12120_12567_-\|DUF305-domain-containing-protein	gnl\|CDD\|367619	pfam03713, DUF305, Domain of unknown function (DUF305). Domain found in small family of bacterial secreted proteins with no known function. Also found in Paramecium bursaria chlorella virus 1. This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important. This domain belongs to the ferritin superfamily. It contains two sequence similar repeats each of which is composed of two alpha helices.	1.81456e-08
NC_009952.1\|WP_012176697.1\|15471_17727_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NC_009952.1\|WP_012176699.1\|19515_20166_-\|DUF998-domain-containing-protein	gnl\|CDD\|377627	pfam06197, DUF998, Protein of unknown function (DUF998). Family of conserved archaeal proteins.	3.00798e-09
NC_009952.1\|WP_012176706.1\|27712_28819_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|223931	COG0863, COG0863, DNA modification methylase [DNA replication, recombination, and repair].	8.13268e-76
NC_009952.1\|WP_012176694.1\|13128_14268_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NC_009952.1\|WP_012176695.1\|14264_14693_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	7.71748e-22
NC_009952.1\|WP_012176698.1\|18178_19426_+\|lytic-murein-transglycosylase	gnl\|CDD\|372592	pfam13406, SLT_2, Transglycosylase SLT domain. This family is related to the SLT domain pfam01464.	5.86326e-143
NC_009952.1\|WP_012176691.1\|11746_11953_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.83562e-31
NC_009952.1\|WP_012176700.1\|20325_22629_-\|multicopper-oxidase-domain-containing-protein	gnl\|CDD\|259922	cd13853, CuRO_1_Tth-MCO_like, The first cupredoxin domain of the bacterial laccases similar to Tth-MCO from Thermus Thermophilus. The subfamily of bacterial laccases includes Tth-MCO and similar proteins. Tth-MCO is a hyperthermophilic multicopper oxidase (MCO) from thermus thermophilus HB27. Laccase is a blue multi-copper enzyme that catalyzes the oxidation of a variety aromatic - notably phenolic and inorganic substances coupled to the reduction of molecular oxygen to water. It has been implicated in a wide spectrum of biological activities and, in particular, plays a key role in morphogenesis, development and lignin metabolism in fungi and plants. Although MCOs have diverse functions, majority of them have three cupredoxin domain repeats that include one mononuclear and one trinuclear copper center. The copper ions are bound in several sites: Type 1, Type 2, and/or Type 3. The ensemble of types 2 and 3 copper is called a trinuclear cluster. MCOs oxidize their substrate by accepting electrons at a mononuclear copper center and transferring them to the active site trinuclear copper center. The cupredoxin domain 1 of 3-domain MCOs contains part the trinuclear copper binding site, which is located at the interface of domains 1 and 3.	1.10367e-46
NC_009952.1\|WP_083768341.1\|25296_26001_-\|hypothetical-protein	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	0.00136336
NC_009952.1\|WP_012176696.1\|14692_15271_+\|glycosyltransferase	gnl\|CDD\|275102	TIGR04282, hypothetical_protein, transferase 1, rSAM/selenodomain-associated. Members of this protein family show strongly correlated phylogenetic distribution, and in most cases co-clustering, with an unusual radical SAM enzyme (TIGR04167) whose C-terminal pfam12345 domain often contains a selenocysteine residue. Other members of the conserved gene neighborhood include another putative glycosyltransferase, an alkylhydroperoxidase family protein (TIGR04169), and a phosphoesterase family protein (TIGR04168). The cassette is likely to be biosynthetic but its exact function is unknown. [Unknown function, Enzymes of unknown specificity].	4.95444e-51
NC_009952.1\|WP_012176705.1\|26997_27618_+\|ribonuclease-HII	gnl\|CDD\|234574	PRK00015, rnhB, ribonuclease HII; Validated.	1.05917e-99
NC_009952.1\|WP_012176689.1\|9027_9855_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0

>NC_009952.1|WP_012176697.1|15471_17727_+|ribonuclease-R
MDRFPTKDEVLAWIEDNPARANKREIARAFGIKGAARIDLKRLLKELEGKGHLEKRKRSYRDPESLPPVSVLKVGDADGDGDLFARPLDWQGAGAEPACLIIPRKGDPALAEGDRILARLTRVEGEDYAYEARLIRRIGTGPRKILGILRKTAEGGRIVPIDKGADREWRVAQGGLLGAQDGDLVEAEQAGPKGRMGLPLARVTQVLGDPGGAKSVSLIAIHQHGILDEFPEAALAEAEAVTAPELGARTDLRDLPLITIDPPDARDRDDAVCAIPDDDPANPGGFVLWVAIADVAAAVRPGGALDREARKRGNSTYFPDRVVPMLPDSLSGDLCSLHEDVDRACMAVRMVIDAEGTKRGQTFHRGLMRSRASLAYGEVQAAVDGDPTERTEPLLEPILRPLFAAYEALKAARARRQPLDLDLPERRIALSETGEVTSVAFRDRLEVHRLIEEFMVLANVAAAETLAKKRTPLLYRVHEEPAETKLDALRETVQAAGLTLAKGRVLRTADLNRLLAQAAGTDDAELINISTLRSMTQAYYSPENFGHFGLALQNYAHFTSPIRRYADLIVHRALITAHGFGEDGLSEADIERLDETGKLISEAERRSMAAERDTIDRYLAAYLADRVGNEFSARISGVARFGAFARLDETGADGLIPIRTIGAEFFHFDADAQALVGSDTGFRLAMGQRVTVRLAEAVPVTGGIGLELLAVEDETVPTGRRRGKSRPVRRKIAAKKAKAGKLKKKLKRKRV
>NC_009952.1|WP_012176696.1|14692_15271_+|glycosyltransferase
MRPTLVVMVKEPRPGRVKTRLGREIGMVGAAWWFRHQGARLIRRLRDPRWELVLAVSPDTEGLASRVWPADLPRWPQGRGDLGDRMGRALRGFGPGPVAVIGADIPGIDRARITEAFAALGRADAVLGPAPDGGYWLIGWAGRRALPAATFESVRWSTEHTRADTIRSLGDCRIAHVAELQDVDTVEDLRRV
>NC_009952.1|WP_012176695.1|14264_14693_+|GNAT-family-N-acetyltransferase
MSTVREISGPQELALCRTLRREVFIEEQAVPEAEEWDGLDAEARHWLVFDGAVPVATMRLRVLGEVGKIERVCVRAAHRGSGHGLALMRAALAALAETPGVTEARLGAQLHAIPFYEALGFTAHGAEFMDGGMPHRWMTKPL
>NC_009952.1|WP_012176694.1|13128_14268_+|succinyl-diaminopimelate-desuccinylase
MTDPVALTADLIRCPSVTPEEGGALSLLEARLSAAGFACTRVDRNGIANLFARWGEKGHARSFGFNGHTDVVPVGARADWRFDPFGAQVEGDWMYGRGAVDMKSAVAAFAAAAMDFVADTPPDGAVILAITGDEEGDAKDGTVALLDWMAAQGEAMDVCLVGEPTCPDEMGEMMKIGRRGSMTFFFEALGVQGHSAYPHRAKNPLPALAKLVDRLAGLELDTGTDHFDPSTLAVTTFDTGNPANNVIPAACRATVNIRFNDAHSSESLTAMVRGIAAEVAAETGIEITDRVSVSGESFITPPGRLSDLVAAAVETETGRVPVLSTSGGTSDARFVQHHCPVVEFGLVGKSMHQVDERVAIAQIPQLKAIYTRILRDYFA
>NC_009952.1|WP_012176693.1|12776_13124_+|hypothetical-protein
MARNPKTDKPAKRPHQVYTLLVEVGRAKDDGLPKAATGAALMCYASGVDEAEAVRETVALLKQADLNPLEVTGYGTLDERLEDGHDISDEERALMQRALDENSVVVAQTTAFYED
>NC_009952.1|WP_044028144.1|12120_12567_-|DUF305-domain-containing-protein
MIATSTAVMYGLMYLNTYALDHVFFSQTRAWMALYMGGAMAVVMLAFMLGMYSNRRANIAVFTGAVLAFAAGVFLVRSQDTVGDVAWMKAMIPHHSIAILTSERATLSDPRVRALADEIIATQRAEIAEMKRYISQIETAAEASDPAS
>NC_009952.1|WP_012176691.1|11746_11953_-|cold-shock-protein
MATGTVKWFNATKGFGFIAPDGGSRDVFVHISAVERAGLTGLEDNQKVTFDIESGRDGRESAANLALA
>NC_009952.1|WP_157865358.1|10787_11255_+|hypothetical-protein
MARFQEAAVNTLEGLALIHQVLLQIEQAETSVNSLEATSAAIERLTSAAELFQDLQTDDLQALVVSIEAVAQIDEGAIQLVRNAEIETAADLARYSSDQSLALAELMGRLQEIDFGPDAAANSEGRTTVNRVVSNISTMMIVVNSVSGALALETQ
>NC_009952.1|WP_157865162.1|10219_10693_+|hypothetical-protein
MNLAFLKTYKDEIASTAAIISIISAIVLIVSVVISARQFYLARQAVQAQAIGTSLAHGRDLYDALAANADLAERLFGVEPPQLEETVFVQKTLSFFSEQYIYRDGGLIDDETWELVQREMCQTYQSPGFLRIAAPLLERGDFPSDFTDILRGCSIAQ
>NC_009952.1|WP_012176689.1|9027_9855_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MSNAQLETAIEAAWEARDTISPATTGETREAIEETLNALDSGALRVAERGADGSWHVNQWAKKAVLLGFRIKDMEAQSGGPQGGGWWDKVDSKFLGWNSGAWEKAGFRAVPSCVVRKSAYIAPGVVLMPSFVNLGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPMQAGPTIIEDNCFIGARSEVVEGCIVREGSVLGMGVFIGQSTKIVDRETGEVMYGEVPPYSVVVAGSMPSKNGVNLYCAVIVKRVDERTRSKTGINELLRD
>NC_009952.1|WP_012176698.1|18178_19426_+|lytic-murein-transglycosylase
MIRATLAALSVAITLPVAAMATPLAQSPHPTARPGAVVQAVALPARFEAWIGAFERRARAAGIRPATFRAAFAGVDYLPDVIRRDRSQAEFTKQIWEYLDSAVSDARLRNGRAAFAARRDTLRAIERRYGVEAEVVTAIWGLESAYGSYRGATPTLSAMATLAYEGRRAAFFEDQLIAALKILQDGDTTPGRMTGSWAGAMGHTQFMPTSYLDYAVDFTGDGRRDIWGEDPTDALASTAAYLEAFGWTRGQPWGVEVRLPAGFDYSLTGEKVKRSPADWARLGVLDMDGRAVPNHGRASILLPAGARGAAFMIFDNFHVIERYNTADAYVIAVGVLSDRIAGGQGIRADWPRGDRALSFTEKKEMQRLLGRAGFDTGKVDGIIGPNTIDAVRRYQASIGVVPDGYASLDILRRLR
>NC_009952.1|WP_012176699.1|19515_20166_-|DUF998-domain-containing-protein
MSAHTPHAALARQPGFLALLAWIGVIGVGALLTGTVIGPLFVPAHDPMADTISDLAAGRGEIIMDVALYGFAAGLFALALACAHVHQGGLAWSAGTLCLAVLAATIVVVGARNEYGDGDAEGVVIHEYLVYGLGVLFTAMPLCLAPRAARLLPWSRPALIGTGLLWAVMSPVFFLLPTDVDGGYERLLGGVACAQVLILATALFAHARQAQPEHAR
>NC_009952.1|WP_012176700.1|20325_22629_-|multicopper-oxidase-domain-containing-protein
MAAHVSTFTRRAFLGLLGTTALVRATGGPGRAQARTTGSFRAPPLMTPAPTTGPGQFDAPAWATYADSFADFVETWRDQPIARERPPLDLAPGDYARIDRFYAVAALSRDGVELTRADGTTARLWSPVYADRIAPEAASLRAVGPTMEFTRGEITGVWLTNDLQVCGTNPEIAPDAPDAGYTPHNFNYTNLHTHGLHVTPRAPSDDVLVTVVPDEIKEICLKHPDAITAEDPATFPYFYDVPDDHPVGTFWYHPHMHGAVASQVGAGMAGALLIRSKPGEIDLDEALAIHCNITRDDERIMVLQQIAYNTRPEAGTGIYVADNFYASTPAQNFACTPSILPGSPTYQAGSAVTAVTSVNGMVTPTLAMAPGEILRFRMINATNGTNYIPKFRILGDAPAGQPLPEVYAIAVDGIPLYPVNPADDPEGRFAPDAPWFPIDYDQPRPEDGDTSHAARRYWTTAELITLAPAQRLDLLVKAPDIQGAEEVRFALAGVPQYDTPASGTSPGTAARSAPNVLDNEEAGKAATDGIVTVVVSGPPRTDQSLPHMAFFEVAALRRLPGLGQANLVRPELPLADMPGAAQPDSLSVAEMLARWRASFAAAAETVTTPSLGVTDPHWKSLNFAFVAEPDPDGTPANFQINGQSFDADLSDDPQLMLPASDWTAWELYSSSDLHMFHIHINSFMVLGRYRVSAPDDPEAITSFIPYLLPIWRDTVYFDAGNDATATPLTGRRVAALSYQVDFTGEFVFHCHSLYHEDNGMMFTVEIA
>NC_009952.1|WP_012176701.1|22865_24683_+|translational-GTPase-TypA
MDLRNIAIIAHVDHGKTTLVDELLKQSGTYRDNQATTERAMDSNDLERERGITILAKATSVEWKGTRINIVDTPGHADFGGEVERILSMVDGVVLLVDAAEGPMPQTKFVTSKALALGLRPIVVLNKVDKPDAEPDRALDECFDLFANLDADDDQLDFPHLYASGRSGWADAELDGPRKDLAALFDLIVHHVPKPRQIAHLDEDFRMLATTLSADPFVGRILTGRVESGTLKVGATVQALSRIGQKIEQFRVTKIRAFRGLGHADIEEAQAGDIVSIAGMSKATVADTICALAVDTPLDAQPIDPPTITVTFGINDSPLAGRDGKKVQSRVIRDRLMKEAESNVAIKIADTPGGEAFEVSGRGELQMGVLIENMRREGFELSISRPQVIMREVDGVKMEPIEEATIDVDDEYSGTVIEKLTGARKGDLVEMKPAGAGKTRIVAHVPSRGLIGYHGEFLTDTRGTGVLNRVFHDWAPYKGPIPGRRAGVLISMENGTSVAYALWNLEERGRMFIGAQEAVYTGMIIGEHSRENDLEVNPLKGKKLTNVRASGTDDAVRLTTPITLSLEEAIAYIDDDELVEVTPNAIRLRKRYLDPHERKRQARAG
>NC_009952.1|WP_083768341.1|25296_26001_-|hypothetical-protein
MPDPITSASRTLRTGTRVVTLGLAAIVAILLVAAVVLFRSLPDANAFNRQVEQIFVENDALTTTDQIRLLEILAQSGTAFSDVLASYRVVIFVLLVFSAALLVAALASLVALVTVNRRVSEIDKKGIIVSSLLISREERLVVLNDMEFKLTEAAMETLSVLAEARMDGDILSGAALEGMIQGRDASDCEEAAGATRIKRLRDALGNQMVSELLVRNISRKGYLLSVDKTAIKMI
>NC_009952.1|WP_044028146.1|25972_26266_-|hypothetical-protein
MDKIRLPLLAACFALLAAPAQAACYADYKAKQDDPLRLHYGVIALSDGACDDRRAASEEAARKIAAGGWTLLNIVSTFGEDGLAERKDNAGPYYLRF
>NC_009952.1|WP_012176704.1|26399_26954_+|hypothetical-protein
MTQTFCTRGLRAAAALLLSAVIGATSLAATASPARALERETLGQLLFGAAAIALAAKVYNDREDRKARERAARAAPPPVQVVEADRWRAYGPRGRVVYGPGTRPGQAFEGAGTRREALTRRIQCQRKLQTETGWVKFYSQACLDRVGADVDVPQTCLRQRWAQGRWVQYFSRGCLRRFGIVDAV
>NC_009952.1|WP_012176705.1|26997_27618_+|ribonuclease-HII
MSRPHFQFETDLAARGYLRIAGVDEVGRGPLAGPVMAAAVVLDPGAIPEGLNDSKQVTAKRREALAAQLAQVAQVGVGVAEVAEIDRLNIRRAAHLAMLRALDALPAPPDMALIDGRDRPDDLPCAAHAIIKGDTKSLSIAAASIVAKVARDRVMTALAAEFPGYGWETNAGYPTQAHRAALLDIGVSPHHRRSFRPVHNILYQEK
>NC_009952.1|WP_012176706.1|27712_28819_+|site-specific-DNA-methyltransferase
MKTKTKQPEAGMLPLNEILAGDCIEVMNSLPEASVDLIFADPPYNLQLKGDLHRPDNSKVDAVDDAWDRFASFDSYDRFSADWLAAARRLLKPNGAIWVIGSYHNIFRVGAALQNTGYWILNDVVWRKSNPMPNFRGKRLTNAHETLIWASKSEGAKYTFNYEALKQLNEGIQMRSDWVLPICTGHERLKDEAGDKAHPTQKPESLLHRVIVATTNPGDVVLDPFFGTGTTGAVAKKLGRDFIGIEREEAYRKVAEARLADVRKYDRESLAVTQSKRSEPRVPFGQLVERGMLRPGEVLTSPGGKVAKVRADGTLVADQVAGSIHQVGAALEHAPSCNGWTYWHFKRDGKSVPIDLLRQQIRAEMRAN
>NC_009952.1|WP_012176707.1|29142_29814_+|cupin
MKLNADFTRRVVVRPEDYAWVDSPASGVQRMMLDRIGDEVARATSLVRFAPNSQFDAHSHGGGEEFLVLEGVFSDEHADYPAGSYVRNPIGTAHTPHIGPEGATILVKLHQFDPEDTEQKVIDTRVAAFLPGAAPGLSVLPLHTVPGESVALVRWAPGTRFAAHRHWGGEEIFVLEGVFQDEHGDYPAGSWLRSPHQSEHAPFSEEGCLIYVKTGHLPMQEAA

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Crispr_ID: NC_009952_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009952_2

396424-397710

TypeII

Consensus_repeat	Method
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	PILER-CR
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CRISPRCasFinder
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CRT

19 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_009952_2

>merge|NC_009952|2|396424-397710|PILER-CR,CRISPRCasFinder,CRT
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACCGCGTCCAGACACGACATTCGGGGGGCAAGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACAAGCGTGTGGGCGTCCCGCCCGTCAGCCACAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACACATTTACCACTCGGCGCGTTGATACCGTTAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACGTGTTTGGCCATCTCCCGCAGCTTGTTGTAAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACCGCACAAAAGCTCGTAGCTGATCTGAAAGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACTGAACCCATCCGCGCCTGCACTCTGACATGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACGAAATCGCAACCCGGTGCTACGCGCAACCGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACCGTTGGCGAAGGCTCCACACATATCGAAAAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACTTGAACGTTGGCGCGTGTATCCTCGTACCGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACCTGACGAACATCGCCCTGACTGACGTAAGTAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACCTGCACGTCGCGCGCTCACGCCATGCCTGCAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACACATCGGGCATCCGCGCCCACAAAGGAGTAAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACGGAGTTCGCGCCCTCCTGCTGAACGGCGCCAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAAAAAGCCGCCCTCGCCTGCGCGTGTGAGCGCAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACACCGCCGCGTTGCCTTTCGCGGCTGAATAGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACACAAAGAAAGACGGTAACGGGAAAGAGCGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACGTGGCGGTGAATTTCGGCGGGTTTGCCGAGAGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAACCGACAACGCCGACGAGAGCGGATACGCCTGAGTTTAGCTGTTCAAAATTCGGGGTCCAGCCGCAACCCACATTTGACACGGGAACAGCGCCAACCCAGTTTAGCTGTTCAGCTATTTCTTCCGGAAATACGA

>NC_009952|2|1|396424-397644|PILER-CR
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGCGTCCAGACACGACATTCGGGGGGCAAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	AAGCGTGTGGGCGTCCCGCCCGTCAGCCAC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACATTTACCACTCGGCGCGTTGATACCGTT
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GTGTTTGGCCATCTCCCGCAGCTTGTTGTA
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGCACAAAAGCTCGTAGCTGATCTGAAAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	TGAACCCATCCGCGCCTGCACTCTGACATG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GAAATCGCAACCCGGTGCTACGCGCAACCG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGTTGGCGAAGGCTCCACACATATCGAAA
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	TTGAACGTTGGCGCGTGTATCCTCGTACCG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CTGACGAACATCGCCCTGACTGACGTAAGT
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CTGCACGTCGCGCGCTCACGCCATGCCTGC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACATCGGGCATCCGCGCCCACAAAGGAGTA
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GGAGTTCGCGCCCTCCTGCTGAACGGCGCC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAA	AAAGCCGCCCTCGCCTGCGCGTGTGAGCGC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACCGCCGCGTTGCCTTTCGCGGCTGAATAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACAAAGAAAGACGGTAACGGGAAAGAGCG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GTGGCGGTGAATTTCGGCGGGTTTGCCGAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGACAACGCCGACGAGAGCGGATACGCCTG
AGTTTAGCTGTTCAAAATTCGGGGTCCAGCCGCAAC

>NC_009952|2|2|396424-397644|CRISPRCasFinder
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGCGTCCAGACACGACATTCGGGGGGCAAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	AAGCGTGTGGGCGTCCCGCCCGTCAGCCAC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACATTTACCACTCGGCGCGTTGATACCGTT
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GTGTTTGGCCATCTCCCGCAGCTTGTTGTA
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGCACAAAAGCTCGTAGCTGATCTGAAAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	TGAACCCATCCGCGCCTGCACTCTGACATG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GAAATCGCAACCCGGTGCTACGCGCAACCG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGTTGGCGAAGGCTCCACACATATCGAAA
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	TTGAACGTTGGCGCGTGTATCCTCGTACCG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CTGACGAACATCGCCCTGACTGACGTAAGT
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CTGCACGTCGCGCGCTCACGCCATGCCTGC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACATCGGGCATCCGCGCCCACAAAGGAGTA
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GGAGTTCGCGCCCTCCTGCTGAACGGCGCC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAA	AAAGCCGCCCTCGCCTGCGCGTGTGAGCGC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACCGCCGCGTTGCCTTTCGCGGCTGAATAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACAAAGAAAGACGGTAACGGGAAAGAGCG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GTGGCGGTGAATTTCGGCGGGTTTGCCGAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGACAACGCCGACGAGAGCGGATACGCCTG
AGTTTAGCTGTTCAAAATTCGGGGTCCAGCCGCAAC

>NC_009952|2|1|396424-397710|CRT
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGCGTCCAGACACGACATTCGGGGGGCAAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	AAGCGTGTGGGCGTCCCGCCCGTCAGCCAC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACATTTACCACTCGGCGCGTTGATACCGTT
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GTGTTTGGCCATCTCCCGCAGCTTGTTGTA
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGCACAAAAGCTCGTAGCTGATCTGAAAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	TGAACCCATCCGCGCCTGCACTCTGACATG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GAAATCGCAACCCGGTGCTACGCGCAACCG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGTTGGCGAAGGCTCCACACATATCGAAA
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	TTGAACGTTGGCGCGTGTATCCTCGTACCG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CTGACGAACATCGCCCTGACTGACGTAAGT
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CTGCACGTCGCGCGCTCACGCCATGCCTGC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACATCGGGCATCCGCGCCCACAAAGGAGTA
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GGAGTTCGCGCCCTCCTGCTGAACGGCGCC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAA	AAAGCCGCCCTCGCCTGCGCGTGTGAGCGC
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACCGCCGCGTTGCCTTTCGCGGCTGAATAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	ACAAAGAAAGACGGTAACGGGAAAGAGCG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	GTGGCGGTGAATTTCGGCGGGTTTGCCGAG
AGTTTAGCTGTTCAGAATTCGGGGTCCAGCCGCAAC	CGACAACGCCGACGAGAGCGGATACGCCTG
AGTTTAGCTGTTCAAAATTCGGGGTCCAGCCGCAAC	CCACATTTGACACGGGAACAGCGCCAACCC
AGTTTAGCTGTTCAGCTATTTCTTCCGGAAATACGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009952.1\|WP_012177091.1\|406253_407786_+\|beta-Ig-H3/fasciclin	unknown	unknown	gnl\|CDD\|225214
NC_009952.1\|WP_012177078.1\|390816_391029_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_009952.1\|WP_012177074.1\|384764_385958_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NC_009952.1\|WP_012177077.1\|388978_390658_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NC_009952.1\|WP_012177086.1\|402103_402430_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_009952.1\|WP_012177092.1\|407835_408195_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379049
NC_009952.1\|WP_157865360.1\|396044_396350_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_009952.1\|WP_044027585.1\|383977_384760_-\|hypothetical-protein	unknown	unknown	unknown
NC_009952.1\|WP_012177087.1\|402440_403163_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
NC_009952.1\|WP_085930394.1\|397988_399088_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NC_009952.1\|WP_162017701.1\|401391_401613_+\|hypothetical-protein	unknown	unknown	unknown
NC_009952.1\|WP_157865361.1\|404245_405166_-\|hypothetical-protein	unknown	unknown	unknown
NC_009952.1\|WP_012177076.1\|387909_388986_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|274042
NC_009952.1\|WP_012177080.1\|395097_396009_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_009952.1\|WP_012177093.1\|408426_408873_-\|nucleoside-diphosphate-kinase-regulator	unknown	unknown	gnl\|CDD\|180236
NC_009952.1\|WP_012177079.1\|391797_395037_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NC_009952.1\|WP_012177084.1\|399226_400612_-\|hypothetical-protein	unknown	unknown	unknown
NC_009952.1\|WP_012177090.1\|405173_406022_-\|hypothetical-protein	unknown	unknown	unknown
NC_009952.1\|WP_044027589.1\|386136_387774_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NC_009952.1\|WP_012177072.1\|383696_383918_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935

Protein	Function_ID	Function_description	E-value
NC_009952.1\|WP_012177091.1\|406253_407786_+\|beta-Ig-H3/fasciclin	gnl\|CDD\|225214	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane].	3.10529e-21
NC_009952.1\|WP_012177074.1\|384764_385958_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.02051e-39
NC_009952.1\|WP_012177077.1\|388978_390658_-\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.18066e-08
NC_009952.1\|WP_012177086.1\|402103_402430_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.5792e-10
NC_009952.1\|WP_012177092.1\|407835_408195_+\|AAA-family-ATPase	gnl\|CDD\|379049	pfam13173, AAA_14, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	7.92223e-09
NC_009952.1\|WP_157865360.1\|396044_396350_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.93263e-24
NC_009952.1\|WP_012177078.1\|390816_391029_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	3.15202e-16
NC_009952.1\|WP_012177087.1\|402440_403163_+\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	1.56842e-06
NC_009952.1\|WP_085930394.1\|397988_399088_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	2.98432e-37
NC_009952.1\|WP_012177076.1\|387909_388986_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|274042	TIGR02224, Tyrosine_recombinase_XerC, tyrosine recombinase XerC. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerC, one of two closely related chromosomal proteins along with XerD (TIGR02225). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and homologs of XerC on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerC, as some apparent XerC examples score in the gray zone between trusted (450) and noise (410) cutoffs, along with some XerD examples. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	2.7352e-05
NC_009952.1\|WP_012177080.1\|395097_396009_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.27905e-76
NC_009952.1\|WP_012177093.1\|408426_408873_-\|nucleoside-diphosphate-kinase-regulator	gnl\|CDD\|180236	PRK05753, PRK05753, nucleoside diphosphate kinase regulator; Provisional.	3.59739e-46
NC_009952.1\|WP_012177079.1\|391797_395037_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	1.70695e-43
NC_009952.1\|WP_044027589.1\|386136_387774_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	5.6083e-34
NC_009952.1\|WP_012177072.1\|383696_383918_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.07076e-05

>NC_009952.1|WP_157865360.1|396044_396350_+|CRISPR-associated-endonuclease-Cas2
MWILVMFDLPTDTKSQRKAATAFRNFLLDEGFERSQFSVYARFVNGKEAFQTRVRRIERNLPEKGDIQVLNFTDRQYRDIVHFSDQGRRAARKNPEQLALF
>NC_009952.1|WP_012177080.1|395097_396009_+|type-II-CRISPR-associated-endonuclease-Cas1
MDQIVDIATDGRHLSRDRGFLKVSEGAREIGRIPLDQIAGVIVHAHGTTWTTSLLTELADRGAPVVLCGANHAPRSVLMPLDGHHAQGARLRAQWQARAPLVKQAWKQTVIAKIAMQAAALEAMGEPHAPVGMLARKVTSGDATNVEAQAARLYWPRMMGTEFRRDRTAPDLNALLNYGYTVLRAATARAVVAAGLHPTIGLHHSNRGNAFALADDLMEPFRPLVDCCVRGLAARNGPQVDPAAKQSLARLIALDLPLGDSLTPVSVALGKLAISLGQSFESGTLDLALPAPPDALTLAGLGA
>NC_009952.1|WP_012177079.1|391797_395037_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MRLGLDIGTSSIGWWLYETDGAGSDARITGVVDGGVRIFSDGRDPKSGASLAVDRRAARAMRRRRDRYLRRRATLMKVLAETGLMPADPAEAKALEALDPFALRAAGLDEPLPLPHLGRALFHLNQRRGFKSNRKTDRGDNESGKIKDATARLDMEMMANGARTYGEFLHKRRQKATDPRHVPSVRTRLSIANRGGPDGKEEAGYDFYPDRRHLEEEFHKLWAAQGAHHPELTETLRDLLFEKIFFQRPLKEPEVGLCLFSGHHGVPPKDPRLPKAHPLTQRRVLYETVNQLRVTADGREARPLTREERDQVIHALDNKKPTKSLSSMVLKLPALAKVLKLRDGERFTLETGVRDAIACDPLRASPAHPDRFGPRWSILDADAQWEVISRIRRVQSDAEHAALVDWLTEAHGLDRAHAEATAHAPLPDGYGRLGLTATTRILYQLTADVVTYADAVKACGWHHSDGRTGECFDRLPYYGEVLERHVIPGSYHPDDDDITRFGRITNPTVHIGLNQLRRLVNRIIETHGKPHQIVVELARDLKKSEEQKRADIKRIRDTTEAAKKRSEKLEELEIEDNGRNRMLLRLWEDLNPDDAMRRFCPYTGTRISAAMIFDGSCDVDHILPYSRTLDDSFPNRTLCLREANRQKRNQTPWQAWGDTPHWHAIAANLKNLPENKRWRFAPDAMTRFEGENGFLDRALKDTQYLARISRSYLDTLFTKGGHVWVVPGRFTEMLRRHWGLNSLLSDAGRGAVKAKNRTDHRHHAIDAAVIAATDPGLLNRISRAAGQGEAAGQSAELIARDTPPPWEGFRDDLRVRLDRIIVSHRADHGRIDHAARKQGRDSTAGQLHQETAYSIVDDIHVASRTDLLSLKPAQLLDEPGRSGQVRDPQLRKALRVATGGKTGKDFENALRYFASKPGPYQAIRRVRIIKPLQAQARVPVPAQDPIKAYQGGSNHLFEIWRLPDGEIEAQVITSFEAHTLEGEKRPHPAAKRLLRVHKGDMVALERDGRRVVGHVQKMDIANGLFIVPHNEANADTRNNDKSDPFKWIQIGARPAIASGIRRVSVDEIGRLRDGGTRPI
>NC_009952.1|WP_012177078.1|390816_391029_-|helix-turn-helix-domain-containing-protein
MTDWPFPPNAPYLSVKEVAQVFRICPKTVRRWIASGQLPATRLGRDWRIARSDLRALAAARGKTGLADVL
>NC_009952.1|WP_012177077.1|388978_390658_-|site-specific-integrase
MTHHRSFKLPTSLADILEALEAHPDPDQKRQSARQSAISRVSKYLHRPPSDIPTDIPQLRRLLETLHPVRCGVKPKSLSTLRTDLAAALRATGVLQDRETAQPLTPPWDRFLASVHSSHQVWGLHRFARYCSARSIQPEDVNTEVVEAFRAELDATLLTRDPDKHVKSMIDTWNHVIRRSGLDLPVLKRAPSTRYLARPLSDYPASLQKEIQDYLDRVSHRDLFSDDGPDKPLRETSLRNIKAHLRQILDALISVGHEPSEFTQLAEVITADNLKTAFRKMKARRGGDDIPSGLGNIAGTAIAIARHHLNAPEEQIKALKAIQKRVAGSAVGMSSKNRKRLAQFNSWDNLEQLISLPSTLMSRAQERPLSRDSALAAMHAAALAILLGCPMRIKNLAGLDLDRHLLPQRSGTHTLYTIRIEGVEVKNSEPIEVRLNAGSSKLLHRYIMQFRSQVSRADGRALFPRMSDGKPRCPSNFGGELTQRVQRETGLSVNPHLFRHVAAKMYLEECPGNFEVVRRLLKHKRLQTTMDFYAELSNQWAHDHYDKVVLSKWRGKIDV
>NC_009952.1|WP_012177076.1|387909_388986_-|tyrosine-type-recombinase/integrase
MSDAIPLVLRFSDWPQADRSAWEDLFAEGDIFDGTGPCASWSEGSRIKRRQSYGQWLSWLARHRPALLEHPPADRVTRDAVRGFMDELEARVQIGTIKNLINDLYVVTRALQPSTDWGWLNTVSRRLMHRADRKSLPAAPPLSAGEVLAKCLAALEEVETSRHTSEMKRAIRFREALMVGFLISRPVRRRTLLSMTTDRHVRRVGTGFEVHFSAEDMKDKKDRWFPLPKVLVGPMEVYLTTYRVRLLGGADTKALWINRYGGAITPDGLSRQFPKVTERLLGHALRPHAFRTIAATSIAEQDPEHVNIIRDILGHATLDMAEKHYNRATGLSACSEYQDLVQATLKRLSGKRPKVRQT
>NC_009952.1|WP_044027589.1|386136_387774_-|recombinase-family-protein
MRAAIYARYSTDLQSDSSIEDQHRLCARLITSNGWREAETYSDRGLSGASHLRPAYQRLLEDARGNAFDIVVAEGLDRISRDQEHIAAFFKQMRFQGIPVFTVAEGEISELHIGLKGTMSSLFLKDLAQKTHRGLEGRVRKGKSAGGVTFGYDVLRQMQADGTLATGERAINPDQAEVVRRILEDYKNGLSPRAIASTLNAEGVPGPRGTWGASTIYGNHQRGTGILNNELYIGRLVWNRQRFIKDPATGKRQARPNPPDAWVIEDVPHLRIVDEDLWDAVKARQLQTRNMAISDGIKKLGRARRARHLFSGMLKCGRCGGGFVQVGSQFYGCASVRNKGTCDNRLTIRREDLEARILSGLKEQLLQPDLIAEYVRAYQEEFNRLAGTVRKERAQNARKLAAVNRQIDQIVDAIAQGMFHISMKDKMTALEAEKLRLEQELRETEEESPVLIHPGLADRYRAQVESLEGALADPQRSVEAADAIRSLLSEIRLVPEADGLTIELVGELAGLLGLGGIQNANDRPKAVCSTSMVAGVGFEPTTFRL
>NC_009952.1|WP_012177074.1|384764_385958_-|site-specific-integrase
MPKLTKRLVESLTVESRDYFVWDDEVKGFGVRVMRSGTRTYQVQYRKGGRTRRASIGRHGTVTVQQARQRAKELLGDVASGGNPVEEISQHRRASTVAALCERFFEAHVMERCKPSTQREYRRSIDFFINPAIGTFKVVDVERRDIAELHHKLRDKPYQANRTLGVLSKMFNLAEVWGLRPDGSNPCRHVPKYRERKRERYLSQAELRRLGEVLADCERSGSESPYVVAAFKLLILTGCRLGEIQTLRWDYLTPNGMELPDSKTGARRIPLPSAARAVLDALPHDPGNPYVIAGRIEGQHITDLQHPWRRIRDLAGLNDVRIHDLRHTYASNAVSSGMPIQMVGRLLGHTQLQTTMRYAHLADDPVRKAAEENAAALSEGLGLGLRARTTPLRVVKG
>NC_009952.1|WP_044027585.1|383977_384760_-|hypothetical-protein
MSYLNGLFANKEFLALLQLEEIRKRKYFSEALSSSIEREFGIPSDTSSTVFLSLECGALLYWNLRKQDHANKKTVRKDLDRLTQKASELADMLSIMTGEAWRAIDSFQLAHDLSPALYPDQRGSKSSDAEATPPRLTKGDVVDLAAKLSALAETTKIATRMVGKGRVGRPEDDATLHLLHAAFQVWEAILRRPFKLDWTGDSEPITDAARFCVRIAQVVDPTISFGRIANASRTVREKSMAVSDLGLTPEIMKHYRKQFG
>NC_009952.1|WP_012177072.1|383696_383918_-|helix-turn-helix-domain-containing-protein
MRDLLDPEQSGQAPAFLDEVAVADMLCQSVRTIQKWRVTGYGPAFYKLGRSVRYRQDEVLGWADARRRAHTSE
>NC_009952.1|WP_085930394.1|397988_399088_+|IS3-family-transposase
MKRSRFTEEQIIGMLKEQEAGMTTADVCRKHGVSTATFYKYKARFGGLEVSDARRLRALEDENAKLKKLLAEAMLDNAILKDVTSRKLVAPGVRREAVAHVVEVHGVSQRRAGKALAVDRSSVRYRSVRPDDAEARAAMKAVAAERRRFGYRRIHVMLERQGIMMNLKKLRRLYREEKLQVRRRGGRKRALGTRWPMLVPDAPNQHWSLDFVSDALTDGRQFRVLAVVDDYSRECLALVADTSLSGLRVVRELDALMLRRGQPAMVVSDNGTELTSVAVLSWCQRTGIEWHYIAPGKPMQNGFVESFNGRFRDELLNESLFSSLADAREQIRAWQHDYNHHRPHSGLGNIPPVEFVAKKGLEMRAA
>NC_009952.1|WP_012177084.1|399226_400612_-|hypothetical-protein
MEEVLAGFAEAEAADPVRLRMELMAPSADGAASHASGIALAAWVWPGFSGSDGIVFHSERQVRNLVQDECLHVGRDDQGRLCLEPGGGYSVARVVFEIEGVHVPFDLPWPDVTVSRRRAEGSVAQLPHGTRLSVGEDDRFDTISIRCPDQKAQLIIRGRREERPFYGGLTRSLAVRDLLAPASDERVLLQRGNGSEVLLFELVAALAPQAINLLPARNAIRLQLKFGDPVDAVAVEVENETGAVVFAEAALRHRPVATRRPDWFHAELNDNDAHGLELTLDADWIDDGPCLARLLIRPEGRDGWRPLRNSRGDSFAVAIANPAAEGFVQDGELQRRFEALSRWLSDCYAAECWPTLERTLVPRWQELGCRLRELRGGDGAVMRAACLPPPDHAAPDWVPILHPLQFAPDLYAAAPQAFAALAASVDPDVAEMAALATLNTARLHPNSITDLHATAISMTAL
>NC_009952.1|WP_162017701.1|401391_401613_+|hypothetical-protein
MPRSLVPEDRTAKHVDRRREKIQCIVFPAVEQNGRFDRGRAKSCFLSQKRVDQVWKLRLAYAGMKKVDVDIAI
>NC_009952.1|WP_012177086.1|402103_402430_+|helix-turn-helix-transcriptional-regulator
MSADGVTFGQAISKARKALGLSQKELAARVMKEEGGGSISPQYLNDIEHDRRSPSSGHLIRQFSGILNIPEDYLYALAGRLPDDLRPDASTPDKVVEAFANFRKTLKE
>NC_009952.1|WP_012177087.1|402440_403163_+|ImmA/IrrE-family-metallo-endopeptidase
MVKMIRDNTGRFAERPFYRERDLDDECERLIRELLMKRHGKVDYPVETDDLTVLIEMHDAGLDPYADLFAYGADVEGVTEFFPDRGPKVSISERIAADERRENRFRTTLTHEFGHVKFHGPLWAQKFANGDLLERGVNAKKALSKRENILDAPQSDWMEWQAGYISGALLMPATPVRRLMSDYCSPRELHSDIHVSTEHAARLIQMVMERFAVSEEAARIRLLKLNLITSARGQPSLFGP
>NC_009952.1|WP_157865361.1|404245_405166_-|hypothetical-protein
MLGLFGATLCSASCAPAIVSRDPNDPFEGGIGGTGIVGTLTGFGSLRINGLRVRRDGRTRYRTPYGITTGEILAPGHVLTIAAMRDASGILAREVSVDFALVGVLREDAGRLSVNGVPLMDPVAARGDGAPGTRVAVSGLWTAQGLRPSRIDPAPTGTQDLIAGTVGRSPDGTGTIGGLPISSAATPPASGAYATAFGRANTERFLAERVHSGRFARLSNLRLLSVEGYLEPAPSAPGLRIAGLGHNFATDVRAAAIGDRRALYFGRYTGRFAAARGYLLPEDATARARLLRNGIQAEFPGPVLDL
>NC_009952.1|WP_012177090.1|405173_406022_-|hypothetical-protein
MEQDSQRFLKVMRGLMRPIVRTLIARGVTAPAFYKLLKSVYVEIAHDAFRIGSEPPTDSRITLLTGVHRRDVRAILSQGGERWESARAKSAMFATVLGQWMARADYRDDTGAPRPLPRTAESGPSFEALVRAINTDIRPRTVLDELLRQGLVTEDAEGRLRISDTARRGPASDADRLVFFAANVGDHIAAASENLMAEDPPFFERAVFYNRLPSEAVDRIEDRARTLSQDLLETLNAESLSQRAADTTPEDGTERYRLGIYFYREADTPAQEPTRDDGGDKN
>NC_009952.1|WP_012177091.1|406253_407786_+|beta-Ig-H3/fasciclin
MTRFSTKLPNIVAIAAGSDDFNLLVKALTAADLVGTVQGLKDITVFAPTDAAFTQLAVDLGFAGDTGDEDAVFASLVASLTELGGGDPIPLLTDVLLYHVSAGAKTAAEIDALEVVGTFLPGATFGSEGTELVDNEPDVANPNIVIPDIAASNGTIQAIDRVLLPIDIPGNEPPAPTETLAGIVAASGGVFDGDKSDFDLLLNAVQAAGLVGALDDPEADLTVFAPNDAAFIGLAQTLGFDGEDEGAAFAHIVEALTLLSGGGDPIPLLQDILLYHVVPEALGSDAVLSAESIPTLLGAPLGVDGVSLVDADPDIGDPALIETDIAATNGIAHVLDGVLLPADILNGDGGRGRVDFEIGDAGNERFFTGANTDFVSGLGGNDVIRLGAGDDVGLGGAGNDTLQGGRGADTLDGGAGRDVLKGGLGDDLLTGGADADVFLFNGFSGADTITDFSLGEDLLQIRARGIDDYGDLAHRISDSDAGAVIAFGGTEITLAGIGADALTASDFQFI
>NC_009952.1|WP_012177092.1|407835_408195_+|AAA-family-ATPase
MHAEAGVALLGPRRVGETTLGLDLSEIRETFYSDMARTADRQILDEPDVYLDELLGKLVVIDEVQSIPGRFCAPGAQIARPTAEHRTGQFLLLGSTSNTLLQQSAELLMVRASHHDLTF
>NC_009952.1|WP_012177093.1|408426_408873_-|nucleoside-diphosphate-kinase-regulator
MPDTRSRPQAAPKPKGRRPRIVINADDLSHIEALAEGAMDRNPALADRLLEEIARARIVPAAKMPLNVIGIGKSATFRDETTGQERTVTLVYPEDADISRARVSVMTPIGVALLGLAEGAVFHWNTRGEERRMLTVIRVSDPAAPESA

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Crispr_ID: NC_009952_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009952_3

3390219-3392259

TypeI-E

Consensus_repeat	Method
GGCTCCCCCGCCCCCGCGGGGATAGACCC	PILER-CR
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CRISPRCasFinder
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CRT

33 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of NC_009952_3

>merge|NC_009952|3|3390219-3392259|PILER-CR,CRISPRCasFinder,CRT
GGCTCCCCCGCCCCCGCGGGGATAGACCCGGCATCGCCCCGGCGGCCACCGACACCACCAGGGCTCCCCCGCCCCCGCGGGGATAGACCCTGGTCGGGCTGGACGTATCTCGCGGAGACGCTGGCTCCCCCGCCCCCGCGGGGATAGACCCTTTCCAGACAACGGGCCTGGCCCTGAATGCCGGGCTCCCCCGCCCCCGCGGGGATAGACCCGACACCGGGGCGATCCGGTCGCCGGGGTTCATGGCTCCCCCGCCCCCGCGGGGATAGACCCCTGGAGGGAGCTGTGGTTGGACCTGACCCGCTGGCTCCCCCGCCCCCGCGGGGATAGACCCCTGCTGACGCGCCTGGCCGGGGCGCTGGATGCGGCTCCCCCGCCCCCGCGGGGATAGACCCGGGAAGGTGCTTGGACTTGCGCCGCCGAGGTTGGCTCCCCCGCCCCCGCGGGGATAGACCCTTGGACAGCACCTCGGGATCGTTGGGCAGCGTGGCTCCCCCGCCCCCGCGGGGATAGACCCTCTTGGACAGCACGAGGGGGGAGGTGATTCTGGGCTCCCCCGCCCCCGCGGGGATAGACCCCCGTCCTGGTCCTCGAACACCCCCGCGCCGGGGGCTCCCCCGCCCCCGCGGGGATAGACCCTGTCCTATGCCGTCGAAAAAGCCGCCAAAGCCGGCTCCCCCGCCCCCGCGGGGATAGACCCACTCACCTATGACGAAGACCGGACGCTCAGCGGGCTCCCCCGCCCCCGCGGGGATAGACCCCCGGAGGGAGCTGTGGTTGGACCTGACCCGCTGGCTCCCCCGCCCCCGCGGGGATAGACCCCGACCACACGTCGCGAAGTCAAGATCCCGACCGGCTCCCCCGCCCCCGCGGGGATAGACCCGAGACTGATAGCGTCGCGGTTGAGACGTTCAAGGCTCCCCCGCCCCCGCGGGGATAGACCCTTGAACCCCTCGGCCCACCCGACGGGCAAGGGGCTCCCCCGCCCCCGCGGGGATAGACCCCCACCCGAAACCAGCGGCCTGGATGAATTCACGGCTCCCCCGCCCCCGCGGGGATAGACCCGTAGTAAATCATGTTCGGGCGCAGCTTCATATGGCTCCCCCGCCCCCGCGGGGATAGACCCAGTGGGATCGCTTGATCCGCGACCGTTTCACCGGCTCCCCCGCCCCCGCGGGGATAGACCCATCCGCATCATCGCCACGGAGTCCGGCGCCGCGGCTCCCCCGCCCCCGCGGGGATAGACCCCGCCGAGCGTTTTGGCGTGACGGTTAGTGATCGGCTCCCCCGCCCCCGCGGGGATAGACCCTTTGGTGACGACCTATTCTTGAAGATCAACGCGGCTCCCCCGCCCCCGCGGGGATAGACCCGGCGCGCTCCTGCTGGCTGTGGTGGCGTTCCTGGCTCCCCCGCCCCCGCGGGGATAGACCCGGCGGCAAGGGTGACACTATCGAGGATCTGGTGGCTCCCCCGCCCCCGCGGGGATAGACCCGCGATTACGAAAAGCACCTGACCTATATCGAGGGCTCCCCCGCCCCCGCGGGGATAGACCCGCAATGGCCGATATGCTCGATCCCCAAAAGGTGTCTCCCCCGCCCCCGCGGGGATAGACCGTGGAACACGTGCACGTCGATAATCCTGGGCCGGGCTCCCCCGCCCCCGCGGGGATAGACCCAGCGAGGGCACTGCGACCGCCACCAGCGCCGAGGCTCCCCCGCCCCCGCGGGGATAGACCCTCGGCTCGCGTCGTCAACTGAAACCGCATCACGGCTCCCCCGCCCCCGCGGGGATAGACCCGTAGCGATTGGGGTGTCGCCTCCTTCGAGGTAGGCTCCCCCGCCCCCGCGGGGATAGACCCTACGACCGCCAGCGGTATATTATTGGTGTGGAGGCTCCCCCGCCCCCGCGGGGATAGACCCAAGGCCCCGCTCGGGCCGGACTACGTGCGTCAGGCTCCCCCGCCCCCGCGGGGATAGACCCGGCGCGAGCGCTTCCTGCACATCGCTGGGTGGGGCTCCCCCGCCCCTGTGGGGATAGACCC

>NC_009952|3|2|3390219-3392198|PILER-CR
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGCATCGCCCCGGCGGCCACCGACACCACCAG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TGGTCGGGCTGGACGTATCTCGCGGAGACGCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTTCCAGACAACGGGCCTGGCCCTGAATGCCG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GACACCGGGGCGATCCGGTCGCCGGGGTTCAT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CTGGAGGGAGCTGTGGTTGGACCTGACCCGCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CTGCTGACGCGCCTGGCCGGGGCGCTGGATGC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGGAAGGTGCTTGGACTTGCGCCGCCGAGGTT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTGGACAGCACCTCGGGATCGTTGGGCAGCGT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TCTTGGACAGCACGAGGGGGGAGGTGATTCTG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CCGTCCTGGTCCTCGAACACCCCCGCGCCGGG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TGTCCTATGCCGTCGAAAAAGCCGCCAAAGCC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	ACTCACCTATGACGAAGACCGGACGCTCAGCG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CCGGAGGGAGCTGTGGTTGGACCTGACCCGCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CGACCACACGTCGCGAAGTCAAGATCCCGACC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GAGACTGATAGCGTCGCGGTTGAGACGTTCAA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTGAACCCCTCGGCCCACCCGACGGGCAAGG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CCACCCGAAACCAGCGGCCTGGATGAATTCAC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GTAGTAAATCATGTTCGGGCGCAGCTTCATAT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	AGTGGGATCGCTTGATCCGCGACCGTTTCACC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	ATCCGCATCATCGCCACGGAGTCCGGCGCCGC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CGCCGAGCGTTTTGGCGTGACGGTTAGTGATC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTTGGTGACGACCTATTCTTGAAGATCAACGC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGCGCGCTCCTGCTGGCTGTGGTGGCGTTCCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGCGGCAAGGGTGACACTATCGAGGATCTGGT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GCGATTACGAAAAGCACCTGACCTATATCGAG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GCAATGGCCGATATGCTCGATCCCCAAAAGGT
GTCTCCCCCGCCCCCGCGGGGATAGACCG	TGGAACACGTGCACGTCGATAATCCTGGGCCG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	AGCGAGGGCACTGCGACCGCCACCAGCGCCGA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TCGGCTCGCGTCGTCAACTGAAACCGCATCAC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GTAGCGATTGGGGTGTCGCCTCCTTCGAGGTA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TACGACCGCCAGCGGTATATTATTGGTGTGGA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	AAGGCCCCGCTCGGGCCGGACTACGTGCGTCA
GGCTCCCCCGCCCCCGCGGGGATAGACCC

>NC_009952|3|3|3390219-3392259|CRISPRCasFinder
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGCATCGCCCCGGCGGCCACCGACACCACCAG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TGGTCGGGCTGGACGTATCTCGCGGAGACGCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTTCCAGACAACGGGCCTGGCCCTGAATGCCG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GACACCGGGGCGATCCGGTCGCCGGGGTTCAT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CTGGAGGGAGCTGTGGTTGGACCTGACCCGCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CTGCTGACGCGCCTGGCCGGGGCGCTGGATGC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGGAAGGTGCTTGGACTTGCGCCGCCGAGGTT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTGGACAGCACCTCGGGATCGTTGGGCAGCGT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TCTTGGACAGCACGAGGGGGGAGGTGATTCTG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CCGTCCTGGTCCTCGAACACCCCCGCGCCGGG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TGTCCTATGCCGTCGAAAAAGCCGCCAAAGCC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	ACTCACCTATGACGAAGACCGGACGCTCAGCG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CCGGAGGGAGCTGTGGTTGGACCTGACCCGCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CGACCACACGTCGCGAAGTCAAGATCCCGACC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GAGACTGATAGCGTCGCGGTTGAGACGTTCAA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTGAACCCCTCGGCCCACCCGACGGGCAAGG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CCACCCGAAACCAGCGGCCTGGATGAATTCAC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GTAGTAAATCATGTTCGGGCGCAGCTTCATAT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	AGTGGGATCGCTTGATCCGCGACCGTTTCACC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	ATCCGCATCATCGCCACGGAGTCCGGCGCCGC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CGCCGAGCGTTTTGGCGTGACGGTTAGTGATC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTTGGTGACGACCTATTCTTGAAGATCAACGC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGCGCGCTCCTGCTGGCTGTGGTGGCGTTCCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGCGGCAAGGGTGACACTATCGAGGATCTGGT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GCGATTACGAAAAGCACCTGACCTATATCGAG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GCAATGGCCGATATGCTCGATCCCCAAAAGGT
GTCTCCCCCGCCCCCGCGGGGATAGACCG	TGGAACACGTGCACGTCGATAATCCTGGGCCG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	AGCGAGGGCACTGCGACCGCCACCAGCGCCGA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TCGGCTCGCGTCGTCAACTGAAACCGCATCAC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GTAGCGATTGGGGTGTCGCCTCCTTCGAGGTA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TACGACCGCCAGCGGTATATTATTGGTGTGGA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	AAGGCCCCGCTCGGGCCGGACTACGTGCGTCA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGCGCGAGCGCTTCCTGCACATCGCTGGGTGG
GGCTCCCCCGCCCCTGTGGGGATAGACCC

>NC_009952|3|2|3390219-3392259|CRT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGCATCGCCCCGGCGGCCACCGACACCACCAG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TGGTCGGGCTGGACGTATCTCGCGGAGACGCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTTCCAGACAACGGGCCTGGCCCTGAATGCCG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GACACCGGGGCGATCCGGTCGCCGGGGTTCAT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CTGGAGGGAGCTGTGGTTGGACCTGACCCGCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CTGCTGACGCGCCTGGCCGGGGCGCTGGATGC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGGAAGGTGCTTGGACTTGCGCCGCCGAGGTT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTGGACAGCACCTCGGGATCGTTGGGCAGCGT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TCTTGGACAGCACGAGGGGGGAGGTGATTCTG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CCGTCCTGGTCCTCGAACACCCCCGCGCCGGG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TGTCCTATGCCGTCGAAAAAGCCGCCAAAGCC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	ACTCACCTATGACGAAGACCGGACGCTCAGCG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CCGGAGGGAGCTGTGGTTGGACCTGACCCGCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CGACCACACGTCGCGAAGTCAAGATCCCGACC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GAGACTGATAGCGTCGCGGTTGAGACGTTCAA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTGAACCCCTCGGCCCACCCGACGGGCAAGG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CCACCCGAAACCAGCGGCCTGGATGAATTCAC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GTAGTAAATCATGTTCGGGCGCAGCTTCATAT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	AGTGGGATCGCTTGATCCGCGACCGTTTCACC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	ATCCGCATCATCGCCACGGAGTCCGGCGCCGC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	CGCCGAGCGTTTTGGCGTGACGGTTAGTGATC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TTTGGTGACGACCTATTCTTGAAGATCAACGC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGCGCGCTCCTGCTGGCTGTGGTGGCGTTCCT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGCGGCAAGGGTGACACTATCGAGGATCTGGT
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GCGATTACGAAAAGCACCTGACCTATATCGAG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GCAATGGCCGATATGCTCGATCCCCAAAAGGT
GTCTCCCCCGCCCCCGCGGGGATAGACCG	TGGAACACGTGCACGTCGATAATCCTGGGCCG
GGCTCCCCCGCCCCCGCGGGGATAGACCC	AGCGAGGGCACTGCGACCGCCACCAGCGCCGA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TCGGCTCGCGTCGTCAACTGAAACCGCATCAC
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GTAGCGATTGGGGTGTCGCCTCCTTCGAGGTA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	TACGACCGCCAGCGGTATATTATTGGTGTGGA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	AAGGCCCCGCTCGGGCCGGACTACGTGCGTCA
GGCTCCCCCGCCCCCGCGGGGATAGACCC	GGCGCGAGCGCTTCCTGCACATCGCTGGGTGG
GGCTCCCCCGCCCCTGTGGGGATAGACCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009952.1\|WP_012179884.1\|3393171_3394230_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
NC_009952.1\|WP_012179894.1\|3402895_3404287_-\|leucyl-aminopeptidase-family-protein	unknown	unknown	gnl\|CDD\|238247
NC_009952.1\|WP_012179891.1\|3399662_3401321_+\|DNA-polymerase-Y-family-protein	unknown	unknown	gnl\|CDD\|176458
NC_009952.1\|WP_012179880.1\|3388954_3389830_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|187850
NC_009952.1\|WP_012179889.1\|3397931_3399182_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
NC_009952.1\|WP_012179872.1\|3377979_3379251_-\|sulfite-dehydrogenase	unknown	unknown	gnl\|CDD\|275348
NC_009952.1\|WP_012179873.1\|3379873_3381040_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NC_009952.1\|WP_012179877.1\|3386357_3387479_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|378153
NC_009952.1\|WP_012179881.1\|3389861_3390155_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NC_009952.1\|WP_012179892.1\|3401705_3402056_+\|DUF2794-domain-containing-protein	unknown	unknown	gnl\|CDD\|371325
NC_009952.1\|WP_012179883.1\|3392687_3393194_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_009952.1\|WP_012179879.1\|3388158_3388950_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_009952.1\|WP_012179887.1\|3396007_3396778_-\|hypothetical-protein	unknown	unknown	unknown
NC_009952.1\|WP_050757855.1\|3381531_3384084_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_009952.1\|WP_012179893.1\|3402059_3402899_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NC_009952.1\|WP_012179878.1\|3387475_3388162_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_009952.1\|WP_012179876.1\|3385789_3386365_+\|hypothetical-protein	cse2gr11	mkCas0171_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_009952.1\|WP_012179888.1\|3397086_3397935_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NC_009952.1\|WP_012179882.1\|3392484_3392688_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935
NC_009952.1\|WP_012179871.1\|3377372_3377993_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|365823

Protein	Function_ID	Function_description	E-value
NC_009952.1\|WP_012179884.1\|3393171_3394230_+\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.36292e-07
NC_009952.1\|WP_012179894.1\|3402895_3404287_-\|leucyl-aminopeptidase-family-protein	gnl\|CDD\|238247	cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains. Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.	4.57434e-157
NC_009952.1\|WP_012179891.1\|3399662_3401321_+\|DNA-polymerase-Y-family-protein	gnl\|CDD\|176458	cd03468, PolY_like, DNA Polymerase Y-family. Y-family DNA polymerases are a specialized subset of polymerases that facilitate translesion synthesis (TLS), a process that allows the bypass of a variety of DNA lesions. Unlike replicative polymerases, TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. The active sites of TLS polymerases are large and flexible to allow the accomodation of distorted bases. Expression of Y-family polymerases is often induced by DNA damage and is believed to be highly regulated. TLS is likely induced by the monoubiquitination of the replication clamp PCNA, which provides a scaffold for TLS polymerases to bind in order to access the lesion. Because of their high error rates, TLS polymerases are potential targets for cancer treatment and prevention.	6.77248e-68
NC_009952.1\|WP_012179880.1\|3388954_3389830_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187850	cd09719, Cas1_I-E, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.009e-88
NC_009952.1\|WP_012179889.1\|3397931_3399182_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	3.63895e-165
NC_009952.1\|WP_012179872.1\|3377979_3379251_-\|sulfite-dehydrogenase	gnl\|CDD\|275348	TIGR04555, probable_sulfite_oxidase_molybdopterin_subunit, sulfite dehydrogenase. Members of this family are the sulfite dehydrogenase SoxC. All members have a twin-arginine translocation (TAT) signal for secretion of proteins with bound cofactor across the plasma membrane.	0
NC_009952.1\|WP_012179873.1\|3379873_3381040_+\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.63453e-37
NC_009952.1\|WP_012179877.1\|3386357_3387479_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	5.11686e-110
NC_009952.1\|WP_012179881.1\|3389861_3390155_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	5.06806e-28
NC_009952.1\|WP_012179892.1\|3401705_3402056_+\|DUF2794-domain-containing-protein	gnl\|CDD\|371325	pfam10984, DUF2794, Protein of unknown function (DUF2794). This is a bacterial family of proteins with unknown function.	8.57931e-53
NC_009952.1\|WP_012179883.1\|3392687_3393194_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.49126e-07
NC_009952.1\|WP_012179879.1\|3388158_3388950_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.41515e-26
NC_009952.1\|WP_050757855.1\|3381531_3384084_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.63767e-92
NC_009952.1\|WP_012179893.1\|3402059_3402899_-\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	4.05356e-19
NC_009952.1\|WP_012179878.1\|3387475_3388162_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	7.11714e-54
NC_009952.1\|WP_012179876.1\|3385789_3386365_+\|hypothetical-protein	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	0.00036202
NC_009952.1\|WP_012179888.1\|3397086_3397935_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	5.40504e-109
NC_009952.1\|WP_012179882.1\|3392484_3392688_+\|DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	0.000691069
NC_009952.1\|WP_012179871.1\|3377372_3377993_-\|cytochrome-c	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	1.60273e-05

>NC_009952.1|WP_012179881.1|3389861_3390155_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPMTMVVTRDVEARYRGFLTSVMLEVAPGVYVAPDLSAGVRQRVWAVLSDWYETLGRGAIVMVWRDPAATGSLGMEMLGTPPKEIVDADGILLVKRK
>NC_009952.1|WP_012179880.1|3388954_3389830_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLKGRLGLDSAKVPHGDRAGLLYLARGALTARDGTLAFQRGSAEGPDALAQGDHAIPLQGVSMILLGPGSTVSHDALRLLAHARTALAAVGEDGVRLYTAPPLIPDRSGLARLQARLWADDDMRIMIARRMYALRLGEVLPHRTLDVLRGIEGARVKESYKITAERFGVPWRGRRYDRADPLAADLPNQALNHAASAVEAAAAIAVSATATVPQLGFIHEDPGQSFVLDIADLWRETVTLPCAFRAAKRAAERPDMPVERIARRLTGETLAKEQVIPAMIDRIKTLIEEGP
>NC_009952.1|WP_012179879.1|3388158_3388950_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MTLYLARLPVDLPALARAAGERGWTRGRRAAFDEGRALHHLLAETFGPGALQPFRLVVAPRAKSGTLWAYTDVDATALREIAAPVPLSEAMVTALSPDRIETKPMPELAVPGRRLGFDIRLRPVVRLASAIPAPADRAAGRDHGFKAGAEVDAFLAEALRQPDREAMHTAERSRETVYAAWLADRFGPAAELEQVTLAAFRRSFAARKDGRGCEGPDATLHGTLTVGDAKAFAERLHRGVGRHKAYGYGMLLIRPPGRPVPKG
>NC_009952.1|WP_012179878.1|3387475_3388162_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSGTDTRWLVLRLSAPMLSFGRVSIDQVGPTARWPGSSMLTGLLANALGWDWDDRARLQALQDRLRFGALILREGDTLTDSQNAQLAKADRGWTTRGAPEGRAGASYDAPHRRRRDFLMDAEYRVVLTLALAEAEPTLDRIGAALDRPARPLFLGRKPCLPTRPLRAGEVRGATVYAALAELNCATPCPAAWPKDDGPDGHRVHDVADTRVWSSGLHGGTRALVEGTL
>NC_009952.1|WP_012179877.1|3386357_3387479_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MPEPRFLQIHTLTSYTAALLNRDDSGLAKRLTYGGAPRTRISSQCLKRHWRIAEDPHALHAIDGADAASRSRELVTRKVLGGLGPEPVVAAIEPVFQKAVYGDKGTSKTARQTLLFGDREIAWLRGEAERLVAEAGGDAGAAAKTAEAWAKDFKKNIAAMRDAVALPGGLTAALFGRMVTSDTSANITAPVHVAHAFTVHGEESESDYFTAVDDLSEDEPGADTIQETELTCGLYYGYVVVDLPGLAKNLGPAAADLSGPILHNLVHLVAEVSPGAKLGSTAPYGRAGLMLLEAGDRQPRSLAEAFRDPVPAAAGMAGATDALTEHLAEMDAAYSTGEDRRFLSLRNTDLPGAARGTLKELADWAAALPAQLS
>NC_009952.1|WP_012179876.1|3385789_3386365_+|hypothetical-protein
MPDDRDHGATALSIAAALRPLDPGALAALRRMTGDGSVPAYWRLAASRPMLSDAPEKWVPIVRAIGILTPKGAPEDRSDLHDAARPLGKVLCDGGDPDWPGKLGPGQKPKPKLSERRLAQLLAARGAQRTILLTRAIRALAASRSGKMGVHVPDIAWAFLRADPSDMLARPYYQCLDRAERAAHTETRADA
>NC_009952.1|WP_050757855.1|3381531_3384084_-|CRISPR-associated-helicase/endonuclease-Cas3
MDARITHNPAWGKTDAAGRPSHHLAHHSMDVAAVLEGLLRHPVISARAAAAAGIYLKPEAVAWLSAFAFLHDIGKLSPRFQAKVWPDGIAGGTASHLSEGLIWADRLLDGQPLLDGAAGPLVAPLVAGGMEKAWFGALLAHHGRPMAFDSFVYPPNPRDVFRDVPGYDWRAEDRRMGAALRQWFPEIAIDLAVLRSHRLVHLFAGLLALADWIGSDDGAFPQRRDFDPDYGASARARAAAALVAIGLSNPAWPGTAPSFRDLTGHPVPRGVQQTIADIPLEARLVIIEAETGSGKTEAALAHFARLRSEGRVDALYFAVPTRAAAGQLHRRIQEAMARIGGPEAVLAVPGMLRAGLAEGRKLPGFRVLWDDDRVHWAAEHPTRFLAAPVAVGTIDQALLAGLQVKHAPLRAAALSRSLLVIDEVHASDAYMNAVARPLVAGHTALGGHTLLMSATLGAGQRAAWLGQPAPSQRAASGLPYPAIWHDAAPADPLRPDPVGYAKSVHPRLVGTMDAEAAAHKAVAAAEKGARVLVLRNTVEAAVATWRAATRARADLCLSVLGQPALHHARFAAEDRRKLDAAVEQALGRAGVTTGIVVLGTQTLEQSLDIDADFLITDLCPMDVLLQRIGRLHRHADRTRPAGFEAAVASIMVPECGLAALADGPRFENGLGAWQTAGGYAGIYLDLRGLELTRRCIADRPVWQIPEDNRTLVEAATHPDALASVEAALDWDEYGHRIDAKSLAEGRAGGLLSLDRGAPFPTAFPGADEAVQTRLGARGPSFALPTGTVGPFGTPISVIAPPAHWCVGLTGEEPVNVTQGETGIRLTIGDNEFLYDRSGLSRARAPRRPLG
>NC_009952.1|WP_012179873.1|3379873_3381040_+|site-specific-integrase
MPKVKLSKKLVESAAAGDGDEVFWDTALPGFGLRVKSSGSKSYVVQYRNRQTGRSRRKTIGQHGPLMTLYQAREIARGYLADALRGGDPVMEAQARRKAKSMRDLADDYMTNHALPKKRPRSAAMDRSLLDRVVLPAFGRQSVDEVSHKDIQRLHNSLRDTPYQANRVLALLSKMFELAIRWGLRGDNPVKGVPRFAEEKRYRWLSDNELDRLREALDAHPNQRAANAIRLQLLTGARTGEVLTSQWSDFDLDRGVWVKPSHHTKQKRTEHLPLSAATVALLRSIAHGRTDDSPFVFPGRKPGHPIKDLKRFWTSVTSTAGLKDYRLHDNRHTHASHLVSSGHSLPIVGRLLGHTNPMTTQRYAHLADDPLRQAAEVMGQKLTNTEKK
>NC_009952.1|WP_012179872.1|3377979_3379251_-|sulfite-dehydrogenase
MDQPEKSSSRLLASSGRRAFLGASAGLGAAAVAGLAARAAPLAVPESNRTMGDPIPETDYGMPIEYEDHVRRRRTDVFVNRQNYSDWSMTPLHQQLGIATPNGLFFERHHNGVARIDPDVHRVAIHGMVRQPLLFSMDDLMRYPSVSRFHFLECSGNGLTDWREARSTTVQQSHGLLSCAQWTGIPLSWLLDEAGLQDGASWVVLEGADGSGHLRSIPIDKIMDDALLAYGQNGEMLRAEQGYPVRAILPGWEGNTNVKWLRRIYVTNEPLHVRGETARYTDPMPDGKWRQFSMEMEAKSVITNPSGGMRLPGPGPVELSGFAWSGNGTISHVDVTVDGGRSWVEAQLEGPVMEKCLTRFRFRWNWDGTPAKIASRAVDSTGYVQPTAEQLARVREISGFVQHNNAIFPWTIASNGEVGNAIA
>NC_009952.1|WP_012179871.1|3377372_3377993_-|cytochrome-c
MQSRNLIRAAGVFLAATAFPVFASDWDRPDAAFGTPISEADLVLWDIAIATPSGGNLPEGQGTVAEGAAVYDELCVACHGENAEGGADLMYGSMVGGIGTMTESRRVLTPGSMYPYAPILFDYVRRAMPLDNPHSMTNDEVYAVSAYLYHLNGLIPEDFVMNAETMPEIQMPNRDAFITDTRPDTMNERCMEGCDPIGTVAMADEG
>NC_009952.1|WP_012179882.1|3392484_3392688_+|DNA-binding-protein
MAKLTQAQLAARWYVSPRTLEQWRWLGKGPRFLKIGARVLYDEAEIEAYEAGQVCQNTHGPLDPGRG
>NC_009952.1|WP_012179883.1|3392687_3393194_+|helix-turn-helix-domain-containing-protein
MAKRFPANRIKTHRIYTVWEVSDALGCHKQTVGRWIRSGALAADMRKRPWLIDGRDLKAFLGQRVARLRCKLALHHCYCLGCKAPQEPDGRMADYVQQTTETGQLTGICPACGALMNKMVRRADLEAIRAKLEVTIQQASPRLVSLEDPRSNVTSTRERRTHGKTQQR
>NC_009952.1|WP_012179884.1|3393171_3394230_+|site-specific-integrase
MARRNSDNQRIKRKYLVWLKDARGLSEASIDKTAAAITGYDDWLGGKDFRAFHSERARSFKRHLGGLRNARTGSPLSASTVNSILRELKAFYYWLADQPGYKSRISRSDADYLSPDRKSDQARRGSLWKPHPSPDQARHVITNMAVGSIIERRNRAFLAFLFLTGSREGAAISVQVRHVDKIHRCVQFDGRDVYTKFGKSFTTGFYPMGAALEKILFGWINELKRDHLFSGGDPLFPKTRVGVGPDRRFQALGIARAPWASPSSAAKIFKRAFVDAGLPPFSPHRVRDTIAELASAHCRTPEEFKAWSQNMGHDDVLTTFRSYGSVAPGRQMELMTRFRERAAIDDDLDVIE
>NC_009952.1|WP_012179887.1|3396007_3396778_-|hypothetical-protein
MGHIRLGTLPRSRKWREVISLIGSDAPLEAVAEAAAKASERDLSKASQDPRFQFVASLLVRLPLLARAPGFEAALADLGVGETAPGSVTGLLAGLELAIDRNTFETGVSSDAGELAKSAFLESLSVQLRDRLPTLFEPTPQEIRAALGSFASGDRFAGLARDFFARLTQRSLDYYLSRELANHTGQGARFADDSQRVAFQQALARHTFEASRIVEEFAGGWYGKTVWQKQALDQPAIDRFTDYAFKKLRQELGRRR
>NC_009952.1|WP_012179888.1|3397086_3397935_+|diaminopimelate-epimerase
MPAMTDTAPDGLPFFKMHGLGNDFVVIDARAAPRPVSDRLVAALADRHRGVGFDQLAVIAPAPEADAHLTFYNADGSTSAACGNATRCIARMILDETGATALRLSTDRGLLLAEDAGDGLTRVNMGQPQTLWSEVPLAEAMDTLELPIEGTPTATGMGNPHCTFFVADAEAIPLDTFGPRYEHHPLYPQRTNVQVAQIVGPDHIRMRVWERGVGVTLASGSSSCATGVAAARRGLTGRKTRIDLDGGTLWIDWREDGVWMTGPNMTVFEGRLTPQFLAETAR
>NC_009952.1|WP_012179889.1|3397931_3399182_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MTAPRFTTLGCRLNAYESEAMREMAEAAGLSDALVVNTCAVTAEAVRKSRQEIRRLRRDNPDAPIIVTGCAAQTEPETFAAMPEVTRVLGNTEKMQPETWAALVPDLIGRTERVQVDDIMSVRETAGHLIDGFGRHRAYVQVQNGCDHRCTFCIIPYGRGNSRSVPAGVVVDQIKRLVDRGFNEVVLTGVDLTSWGADLPGTPRLGDLVMRILRLVPDLPRLRISSIDSIEADENLMRAIATEPRLMPHLHLSLQAGDDLILKRMKRRHLRDDAIAFCEEARRLRPEMTFGADIIAGFPTETEAMFENSLRLVTDCDLTWLHVFPYSPRKGTPAARMPAVPGAAIKDRAARLRALGATQVARHLAAQQGRTHKILIESPRLGRTEQFTEVAFAEDHPEGQIVEARITGIAGQRLAA
>NC_009952.1|WP_012179891.1|3399662_3401321_+|DNA-polymerase-Y-family-protein
MSPARRILALWFPRLGAERALRIARLIEPGPFATVAEQGAAQVLDSLSIAASERGLQPGQPLRDAQAICPALLTRPADPPGEAAFLAALRRWAGKVSPWVAAQPDNTLVIDLTGCAHLFGGEAEVIALMERDCADMGLSVRAGLADSLGGAWALAHYAGRRLDPVRSGDAIDQEARATRSRATKRRHWTRGGTAPRADLAPAEVARIAPPGRIRQALNPLPVAALRLAPETETGLARVGLRRIEDLTGLPRAALARRFGLQVARRLDQALGLEPEPVSPAAPDAVFAVRLTLPDPIGLIEDLTAGIDRLLPPLGDKLAAAGRGARRLRLELLRCDQTRQSFDLGLAHPSADPARLRPLILQKLDEAEAGFGIDVIRLEAVQTEPVQAAQHAGHLEATRAAKAGRTRTALDDLLGTLGARIGLEAITRWHPADSHIPEKGATVLSAAWSAAHDGDWPGSDRPRPLTLFAPEPVHAPQDPTPPARFRWRGQTLELGRAEGPERLAPEWWLDDPNWRSGVRDYWRVETGDGRRLWLFYAHGGALSAGWFCQGQFA
>NC_009952.1|WP_012179892.1|3401705_3402056_+|DUF2794-domain-containing-protein
MVVQDPIPFRKPQTPVPEQVAFDRRELGVILSLYGRMVAAGEWRDYGISCLRDVAIFAVFRRTAEHPLYRIEKRPKLANRQGMYAVIGAEGQILKRGHDLRTVLRVLEKKLIRAVD
>NC_009952.1|WP_012179893.1|3402059_3402899_-|C40-family-peptidase
MTGPDPRRTPFDGTTALEVLRGAVPAARFTPGRAAQVVWPETPLLRRPGGAIDKTLLMGEPVTVISEGAGAAFVQSGWDGYVGYADPAALGPARAATHVATARGSHLYTEPDFKSPPRFAVSLGTAHSVTGQTDGFLETPHGFLPVQHAAALPTRLPPPETARRLRGTPYLWGGNSGTGIDCSGLVQLACRLAGIVAPRDSDQQAAELGTPLPPDAALQAGDLVFWKGHVGMMASATDLIHANAHHMAVAQEPLSEAAARIAANEFGAITDRRRLPEWA
>NC_009952.1|WP_012179894.1|3402895_3404287_-|leucyl-aminopeptidase-family-protein
MSDPLYSFAPPGVPARPIHVVPEGETDTALASLSGPQRRWAEAQGFTGKLGSHVILPDPEGAPVAVLAGYGTAESRARQRFALAPLATALPAGDYAFHGLDDPAALAEQSLGWLLAGYGFTRYKGTPATPARLQLAPGLDAARLIACAAGEALTRDLINTPANDMGPEELEAAARSLASRFAADITVIRDQDLLAQNFPLIHTVGHASDRRPRLIDLRWGDAGPALTLVGKGVCFDTGGLNLKPGVSMALMKKDMGGAATVLGLAQMIMALGLRLRLRVLIPAVENSVAGGAFRPGDILPSRKGLTVEINNTDAEGRLVLADALALADEESPDLILSMATLTGAARVAVGPDLAPFYATRPEDAAALRAGAVRAADPVWEMPFHAPYEKMIEPGIADLDNAPSGGFAGSITAALFLRRFVEAPRYLHFDIYGWQPSAAPARPKGGAGQGARAVLEALPELLGL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009952_2	2.14\|397316\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397316-397345	30	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	585377-585406	4	0.867
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	MN813684	Microbacterium phage Terij, complete genome	8990-9021	4	0.875
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	MK937606	Microbacterium phage Margaery, complete genome	8928-8959	4	0.875
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN508620	UNVERIFIED: Pseudomonas phage E2005-24-39, complete genome	23668-23697	5	0.833
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871461	UNVERIFIED: Pseudomonas phage Pa-J, complete genome	31147-31176	5	0.833
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT119376	Pseudomonas phage chunk, complete genome	4741-4770	5	0.833
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871458	UNVERIFIED: Pseudomonas phage Pa-G, complete genome	19416-19445	5	0.833
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871459	UNVERIFIED: Pseudomonas phage Pa-H, complete genome	23662-23691	5	0.833
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT118298	Pseudomonas phage Epa21, complete genome	60815-60844	5	0.833
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_042079	Pseudomonas phage vB_PaeM_E217, complete genome	5210-5239	5	0.833
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT118297	Pseudomonas phage Epa20, complete genome	63133-63162	5	0.833
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT118291	Pseudomonas phage Epa12, complete genome	41810-41839	5	0.833
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LC472884	Pseudomonas phage S50 DNA, complete genome	17619-17648	5	0.833
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_048745	Pseudomonas phage vB_PaeM_SCUT-S1, complete genome	5215-5244	5	0.833
NC_009952_2	2.18\|397579\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397579-397608	30	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	197117-197146	5	0.833
NC_009952_2	2.18\|397579\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397579-397608	30	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	197117-197146	5	0.833
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	MK937608	Microbacterium phage Cressida, complete genome	9070-9101	5	0.844
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	MN813682	Microbacterium phage Matzah, complete genome	8994-9025	5	0.844
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	MK937591	Microbacterium phage Cinna, complete genome	8850-8881	5	0.844
NC_009952_2	2.6\|396789\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396789-396818	30	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	261781-261810	6	0.8
NC_009952_2	2.6\|396789\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396789-396818	30	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	20386-20415	6	0.8
NC_009952_2	2.11\|397118\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397118-397147	30	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	853289-853318	6	0.8
NC_009952_2	2.11\|397118\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397118-397147	30	NZ_CP011518	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence	592819-592848	6	0.8
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	MH271303	Microbacterium phage MementoMori, complete genome	8996-9027	6	0.812
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1134829-1134860	6	0.812
NC_009952_3	3.8\|3390675\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390675-3390706	32	NZ_CP014598	Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence	207604-207635	6	0.812
NC_009952_3	3.8\|3390675\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390675-3390706	32	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	472527-472558	6	0.812
NC_009952_3	3.21\|3391467\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391467-3391498	32	NZ_CP041190	Labrenzia sp. PHM005 plasmid p1BIR, complete sequence	4278-4309	6	0.812
NC_009952_3	3.23\|3391589\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391589-3391620	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1165185-1165216	6	0.812
NC_009952_3	3.32\|3392138\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3392138-3392169	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	70306-70337	6	0.812
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	NC_004527	Rhodobacter blasticus plasmid pMG160 DNA, complete sequence	1208-1237	7	0.767
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	NC_022061	Mycobacterium phage KayaCho, complete genome	4031-4060	7	0.767
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	754798-754827	7	0.767
NC_009952_2	2.6\|396789\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396789-396818	30	NZ_CP045177	Streptomyces tsukubensis strain AT3 plasmid pST1, complete sequence	12436-12465	7	0.767
NC_009952_2	2.10\|397052\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397052-397081	30	NZ_CP045339	Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence	798366-798395	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LZ998054	JP 2017534684-A/1: Phage Therapy	4125-4154	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MK837010	Pseudomonas virus Pa204, complete genome	12322-12351	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT133562	Pseudomonas phage willy, complete genome	4615-4644	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_011165	Pseudomonas phage LBL3, complete genome	4139-4168	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT108729	Pseudomonas phage Epa22, complete genome	33897-33926	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT491206	Pseudomonas phage vB_PaeM_USP_3, complete genome	4922-4951	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT491205	Pseudomonas phage vB_PaeM_USP_2, complete genome	4679-4708	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871485	UNVERIFIED: Pseudomonas phage PaSz-8_45_66k, complete genome	61879-61908	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871467	UNVERIFIED: Pseudomonas phage Pa-P, complete genome	15378-15407	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_041902	Pseudomonas phage PA5, complete genome	13286-13315	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871473	UNVERIFIED: Pseudomonas virus Pa-Z, complete genome	403-432	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871457	UNVERIFIED: Pseudomonas phage Pa-F, complete genome	11192-11221	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT933737	Pseudomonas phage PASA16, complete genome	42447-42476	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LC105987	Pseudomonas phage KPP22 DNA, complete genome	4424-4453	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT413450	Pseudomonas phage Epa15, complete genome	23617-23646	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871479	UNVERIFIED: Pseudomonas phage PaSt-2_45_65k, complete genome	45163-45192	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_019451	Pseudomonas phage NH-4, complete genome	5208-5237	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LC102730	Pseudomonas phage S12-1 DNA, complete genome	4124-4153	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LC472883	Pseudomonas phage S12-3 DNA, complete genome	4124-4153	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT118299	Pseudomonas phage Epa25, complete genome	52689-52718	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871464	UNVERIFIED: Pseudomonas phage Pa-M, complete genome	42572-42601	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	KP340288	Pseudomonas phage phiKTN6, complete genome	4664-4693	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	FM201281	Pseudomonas phage LBL3 complete genome	4139-4168	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT119368	Pseudomonas phage shane, complete genome	4546-4575	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	KU198331	Pseudomonas phage NP3, complete genome	4917-4946	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN615701	Pseudomonas phage vB_PaeM_SMS21, complete genome	5198-5227	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	KM434184	Pseudomonas phage vB_Pae_PS44, complete genome	6457-6486	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN131142	Pseudomonas virus PA8P1, complete genome	11557-11586	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT118290	Pseudomonas phage Epa10, complete genome	48689-48718	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_050146	Pseudomonas phage Epa7, complete genome	33339-33368	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_048676	Pseudomonas phage SL1, complete genome	1105-1134	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LQ277707	Sequence 2 from Patent WO2016071503	13971-14000	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	GU815091	Pseudomonas phage JG024, complete genome	4929-4958	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LC472881	Pseudomonas phage R12 DNA, complete genome	47445-47474	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT108727	Pseudomonas phage Epa11, complete genome	56279-56308	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LQ277706	Sequence 1 from Patent WO2016071503	4125-4154	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN131141	Pseudomonas virus PaP1_EPu-2019, complete genome	12234-12263	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871462	UNVERIFIED: Pseudomonas virus Pa-K, complete genome	23662-23691	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	FM201282	Pseudomonas phage LMA2 complete genome	5207-5236	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT119363	Pseudomonas phage debbie, complete genome	4545-4574	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN615700	Pseudomonas phage vB_PaeM_SMS12, complete genome	5023-5052	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871509	UNVERIFIED: Pseudomonas phage pasz5, complete genome	23661-23690	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_019935	Pseudomonas phage KPP12 DNA, complete genome	4144-4173	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	KX171208	Pseudomonas phage vB_Pae436M-8, complete genome	5255-5284	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	KR054033	Pseudomonas phage DL68, complete genome	4288-4317	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LZ998055	JP 2017534684-A/2: Phage Therapy	13971-14000	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LN610579	Pseudomonas phage vB_PaeM_PAO1_Ab27, complete genome	12679-12708	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871465	UNVERIFIED: Pseudomonas virus Pa-N, complete genome	23666-23695	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MK318076	Pseudomonas phage vB_PaeM_fHoPae01, complete genome	12132-12161	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LZ998059	JP 2017534684-A/6: Phage Therapy	19680-19709	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LQ277711	Sequence 6 from Patent WO2016071503	19680-19709	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871460	UNVERIFIED: Pseudomonas phage Pa-I, complete genome	63172-63201	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_011756	Pseudomonas phage SN, complete genome	4911-4940	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT119365	Pseudomonas phage goodold, complete genome	4419-4448	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LC105988	Pseudomonas phage KPP22M1 DNA, complete genome	4424-4453	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871487	UNVERIFIED: Pseudomonas phage PaSz-9_45_65k, complete genome	45542-45571	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT491204	Pseudomonas phage vB_PaeM_USP_1, complete genome	4634-4663	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	KR869157	Pseudomonas phage vB_PaeM_CEB_DP1, complete genome	5207-5236	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN131143	Pseudomonas virus PA11P1, complete genome	11816-11845	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_048626	Pseudomonas phage PA01 DNA, nearly complete genome	23667-23696	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LC105990	Pseudomonas phage KPP22M3 DNA, complete genome	4424-4453	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	LC105989	Pseudomonas phage KPP22M2 DNA, complete genome	4424-4453	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_029005	Streptomyces phage phiSAJS1, complete genome	46095-46124	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT349888	Pseudomonas phage PHW2, complete genome	6586-6615	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MT133561	Pseudomonas phage goonie, complete genome	4435-4464	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871508	UNVERIFIED: Pseudomonas phage pasz2, complete genome	23926-23955	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN615702	Pseudomonas phage vB_PaeM_SMS29, complete genome	5023-5052	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MF623055	Pseudomonas phage BrSP1, complete genome	11901-11930	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_050147	Pseudomonas phage Epa13, complete genome	23661-23690	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MG897799	Pseudomonas phage vB_PaeM_LS1, complete genome	19976-20005	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_011166	Pseudomonas phage LMA2, complete genome	5207-5236	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	MN871466	UNVERIFIED: Pseudomonas phage Pa-O, complete genome	11119-11148	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_042080	Pseudomonas phage vB_PaeM_E215, complete genome	58677-58706	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_050148	Pseudomonas virus Pa193, complete genome	12673-12702	7	0.767
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	KP340287	Pseudomonas phage phiKT28, complete genome	5256-5285	7	0.767
NC_009952_2	2.14\|397316\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397316-397345	30	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	1082032-1082061	7	0.767
NC_009952_2	2.16\|397448\|29\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397448-397476	29	NZ_KY433363	Proteus mirabilis strain R997 plasmid pR997, complete sequence	63823-63851	7	0.759
NC_009952_2	2.17\|397513\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397513-397542	30	NZ_CP021084	Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence	211855-211884	7	0.767
NC_009952_2	2.17\|397513\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397513-397542	30	LC528882	Burkholderia phage FLC5 DNA, complete genome	16297-16326	7	0.767
NC_009952_2	2.18\|397579\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397579-397608	30	NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	562523-562552	7	0.767
NC_009952_2	2.18\|397579\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397579-397608	30	NZ_CP050100	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence	233449-233478	7	0.767
NC_009952_2	2.18\|397579\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397579-397608	30	NZ_CP049733	Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence	550211-550240	7	0.767
NC_009952_2	2.18\|397579\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397579-397608	30	NZ_CP053443	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence	196228-196257	7	0.767
NC_009952_2	2.18\|397579\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397579-397608	30	NZ_CP054026	Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence	255531-255560	7	0.767
NC_009952_2	2.18\|397579\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397579-397608	30	NZ_CP050106	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence	234579-234608	7	0.767
NC_009952_2	2.18\|397579\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397579-397608	30	NZ_CP016291	Rhizobium leguminosarum strain Vaf10 plasmid unnamed6, complete sequence	174251-174280	7	0.767
NC_009952_2	2.18\|397579\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397579-397608	30	NZ_CP050111	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence	234763-234792	7	0.767
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	45462-45493	7	0.781
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	160765-160796	7	0.781
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	320101-320132	7	0.781
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP047236	Gordonia sp. JH63 plasmid pJH63-1, complete sequence	84957-84988	7	0.781
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	261556-261587	7	0.781
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP041043	Paracoccus sp. AK26 plasmid pAK3, complete sequence	91692-91723	7	0.781
NC_009952_3	3.6\|3390553\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390553-3390584	32	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	292004-292035	7	0.781
NC_009952_3	3.6\|3390553\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390553-3390584	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	50400-50431	7	0.781
NC_009952_3	3.6\|3390553\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390553-3390584	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	272272-272303	7	0.781
NC_009952_3	3.6\|3390553\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390553-3390584	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	163894-163925	7	0.781
NC_009952_3	3.10\|3390797\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390797-3390828	32	NZ_CP034352	Streptomyces sp. W1SF4 plasmid p2, complete sequence	92836-92867	7	0.781
NC_009952_3	3.10\|3390797\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390797-3390828	32	NZ_CP011275	Planctomyces sp. SH-PL62 plasmid pPL62-2, complete sequence	50677-50708	7	0.781
NC_009952_3	3.11\|3390858\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390858-3390889	32	NZ_CP021794	Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence	727095-727126	7	0.781
NC_009952_3	3.11\|3390858\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390858-3390889	32	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	910988-911019	7	0.781
NC_009952_3	3.20\|3391406\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391406-3391437	32	NZ_CP022365	Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence	23299-23330	7	0.781
NC_009952_3	3.23\|3391589\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391589-3391620	32	NZ_CP018784	Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence	123928-123959	7	0.781
NC_009952_3	3.23\|3391589\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391589-3391620	32	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	528553-528584	7	0.781
NC_009952_3	3.23\|3391589\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391589-3391620	32	NC_014157	Salinibacter ruber M8 plasmid pSR84, complete sequence	42349-42380	7	0.781
NC_009952_3	3.33\|3392199\|32\|NC_009952\|CRISPRCasFinder,CRT	3392199-3392230	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	505996-506027	7	0.781
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	CP053333	Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence	22474-22503	8	0.733
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	KJ419279	Enterobacteria phage 9g, complete genome	47333-47362	8	0.733
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	MK373794	Escherichia phage vB_EcoS_HdK1, complete genome	22664-22693	8	0.733
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	MK373795	Escherichia phage vB_EcoS_HdSG1, complete genome	22445-22474	8	0.733
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	NC_029021	Enterobacteria phage JenK1, complete genome	14445-14474	8	0.733
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	AB916497	Ralstonia phage RS138 DNA, complete genome	13885-13914	8	0.733
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	436603-436632	8	0.733
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	436637-436666	8	0.733
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	436637-436666	8	0.733
NC_009952_2	2.4\|396658\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396658-396687	30	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	436629-436658	8	0.733
NC_009952_2	2.5\|396724\|29\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	396724-396752	29	NZ_CP042825	Rhizobium sp. WL3 plasmid unnamed2, complete sequence	377898-377926	8	0.724
NC_009952_2	2.10\|397052\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397052-397081	30	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	390338-390367	8	0.733
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1329309-1329338	8	0.733
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	922817-922846	8	0.733
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	346221-346250	8	0.733
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	823290-823319	8	0.733
NC_009952_2	2.13\|397250\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397250-397279	30	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	634108-634137	8	0.733
NC_009952_2	2.14\|397316\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397316-397345	30	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	86363-86392	8	0.733
NC_009952_2	2.15\|397382\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397382-397411	30	KY783914	Mycobacterium phage GardenSalsa, complete genome	37928-37957	8	0.733
NC_009952_2	2.15\|397382\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397382-397411	30	KY223999	Mycobacterium phage MrMagoo, complete genome	37928-37957	8	0.733
NC_009952_2	2.18\|397579\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397579-397608	30	NZ_CP025017	Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence	214444-214473	8	0.733
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NC_015952	Streptomyces violaceusniger Tu 4113 plasmid pSTRVI02, complete sequence	105553-105584	8	0.75
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	49631-49662	8	0.75
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP040720	Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence	196403-196434	8	0.75
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP022542	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence	145103-145134	8	0.75
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	149041-149072	8	0.75
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	303770-303801	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	507321-507352	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1529273-1529304	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	891865-891896	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1134581-1134612	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1537266-1537297	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	807110-807141	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	983909-983940	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1159465-1159496	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1312427-1312458	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1730065-1730096	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1519014-1519045	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	895448-895479	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	894053-894084	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	892545-892576	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1095248-1095279	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	962121-962152	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1005063-1005094	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	983955-983986	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	962121-962152	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1005063-1005094	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	962121-962152	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	962125-962156	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1005063-1005094	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1005063-1005094	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1005063-1005094	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1180097-1180128	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	962121-962152	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	CP011998	Ralstonia solanacearum strain YC45 plasmid, complete sequence	1202220-1202251	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP045548	Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence	210116-210147	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1005065-1005096	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	498992-499023	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	449020-449051	8	0.75
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NC_009479	Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid pCM2, complete sequence	15844-15875	8	0.75
NC_009952_3	3.6\|3390553\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390553-3390584	32	NZ_CP032323	Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence	541337-541368	8	0.75
NC_009952_3	3.6\|3390553\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390553-3390584	32	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	563582-563613	8	0.75
NC_009952_3	3.8\|3390675\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390675-3390706	32	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	1003520-1003551	8	0.75
NC_009952_3	3.11\|3390858\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390858-3390889	32	NZ_CP015989	Sphingobium sp. EP60837 plasmid pEP2, complete sequence	104931-104962	8	0.75
NC_009952_3	3.16\|3391163\|31\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391163-3391193	31	NZ_CP039641	Azospirillum sp. TSH100 plasmid p2, complete sequence	37659-37689	8	0.742
NC_009952_3	3.16\|3391163\|31\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391163-3391193	31	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	363265-363295	8	0.742
NC_009952_3	3.20\|3391406\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391406-3391437	32	NZ_CP030074	Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence	501307-501338	8	0.75
NC_009952_3	3.20\|3391406\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391406-3391437	32	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	28309-28340	8	0.75
NC_009952_3	3.20\|3391406\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391406-3391437	32	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	801959-801990	8	0.75
NC_009952_3	3.20\|3391406\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391406-3391437	32	MN813686	Mycobacterium phage BirdsNest, complete genome	34054-34085	8	0.75
NC_009952_3	3.21\|3391467\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391467-3391498	32	NZ_CP013369	Burkholderia ubonensis strain RF23-BP41 plasmid pRF23, complete sequence	145128-145159	8	0.75
NC_009952_3	3.24\|3391650\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391650-3391681	32	KY549153	Rhodococcus phage AngryOrchard, complete genome	33927-33958	8	0.75
NC_009952_3	3.24\|3391650\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391650-3391681	32	MN945902	Rhodococcus phage Dinger, complete genome	33928-33959	8	0.75
NC_009952_3	3.24\|3391650\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391650-3391681	32	MH271315	Rhodococcus phage Takoda, complete genome	33969-34000	8	0.75
NC_009952_3	3.24\|3391650\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391650-3391681	32	MF324903	Rhodococcus phage AppleCloud, complete genome	33586-33617	8	0.75
NC_009952_3	3.24\|3391650\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391650-3391681	32	KX712237	Rhodococcus phage Partridge, complete genome	34084-34115	8	0.75
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	606736-606767	8	0.75
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP050099	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence	356901-356932	8	0.75
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	580378-580409	8	0.75
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	480628-480659	8	0.75
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP049732	Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence	546357-546388	8	0.75
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	383093-383124	8	0.75
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NC_012858	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence	22478-22509	8	0.75
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP048282	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence	449908-449939	8	0.75
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	322510-322541	8	0.75
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	387493-387524	8	0.75
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	509301-509332	8	0.75
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	191780-191811	8	0.75
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_LT703507	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 3	78245-78276	8	0.75
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_CP015280	Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence	29861-29892	8	0.75
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_CP015273	Mycobacterium chimaera strain ZUERICH-1 plasmid unnamed 1, complete sequence	70470-70501	8	0.75
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_CP023153	Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_2, complete sequence	17498-17529	8	0.75
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NC_020275	Mycobacterium intracellulare subsp. yongonense 05-1390 plasmid pMyong1, complete sequence	55573-55604	8	0.75
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_CP029333	Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence	119220-119251	8	0.75
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_CP019224	Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_1, complete sequence	61023-61054	8	0.75
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_CP045964	Mycobacterium chimaera strain AUSMDU00007395 plasmid pAUSMDU00007395_01, complete sequence	61713-61744	8	0.75
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NC_022654	Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence	62253-62284	8	0.75
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5454253-5454284	8	0.75
NC_009952_3	3.33\|3392199\|32\|NC_009952\|CRISPRCasFinder,CRT	3392199-3392230	32	NZ_CP010991	Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence	60518-60549	8	0.75
NC_009952_3	3.33\|3392199\|32\|NC_009952\|CRISPRCasFinder,CRT	3392199-3392230	32	NC_014007	Sphingobium japonicum UT26S plasmid pCHQ1, complete sequence	39782-39813	8	0.75
NC_009952_2	2.10\|397052\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397052-397081	30	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	360614-360643	9	0.7
NC_009952_2	2.10\|397052\|30\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	397052-397081	30	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	360614-360643	9	0.7
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP015236	Rhodococcus fascians D188 plasmid pFiD188, complete sequence	95864-95895	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	754818-754849	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	814475-814506	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1013948-1013979	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1118427-1118458	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP047236	Gordonia sp. JH63 plasmid pJH63-1, complete sequence	41549-41580	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	1038926-1038957	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP032054	Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence	640656-640687	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP020556	Streptomyces sp. Sge12 plasmid pSGE, complete sequence	26969-27000	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP016560	Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence	297912-297943	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP024582	Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence	4474-4505	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NC_017311	Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence	142366-142397	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	52510-52541	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NC_005863	Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence	147809-147840	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	40379-40410	9	0.719
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP016381	Aeromonas hydrophila strain AHNIH1 plasmid pASP-135, complete sequence	60303-60334	9	0.719
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	HQ332136	Dunaliella viridis virus SI2 genomic sequence	20845-20876	9	0.719
NC_009952_3	3.6\|3390553\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390553-3390584	32	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	500697-500728	9	0.719
NC_009952_3	3.6\|3390553\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390553-3390584	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1698321-1698352	9	0.719
NC_009952_3	3.6\|3390553\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390553-3390584	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	2447604-2447635	9	0.719
NC_009952_3	3.6\|3390553\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390553-3390584	32	MN855586	Bacteriophage sp. isolate 117, complete genome	2051-2082	9	0.719
NC_009952_3	3.8\|3390675\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390675-3390706	32	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	902128-902159	9	0.719
NC_009952_3	3.10\|3390797\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390797-3390828	32	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	176473-176504	9	0.719
NC_009952_3	3.16\|3391163\|31\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391163-3391193	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3923016-3923046	9	0.71
NC_009952_3	3.16\|3391163\|31\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391163-3391193	31	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	963357-963387	9	0.71
NC_009952_3	3.16\|3391163\|31\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391163-3391193	31	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	849767-849797	9	0.71
NC_009952_3	3.17\|3391223\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391223-3391254	32	NZ_CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	351641-351672	9	0.719
NC_009952_3	3.17\|3391223\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391223-3391254	32	NC_008697	Nocardioides sp. JS614 plasmid pNOCA01, complete sequence	30088-30119	9	0.719
NC_009952_3	3.19\|3391345\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391345-3391376	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	469762-469793	9	0.719
NC_009952_3	3.20\|3391406\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391406-3391437	32	NZ_CP020371	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence	179811-179842	9	0.719
NC_009952_3	3.20\|3391406\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391406-3391437	32	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	393597-393628	9	0.719
NC_009952_3	3.21\|3391467\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391467-3391498	32	NC_022995	Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence	304768-304799	9	0.719
NC_009952_3	3.21\|3391467\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391467-3391498	32	NZ_CP017424	Arthrobacter sp. ZXY-2 plasmid pZXY23, complete sequence	56979-57010	9	0.719
NC_009952_3	3.23\|3391589\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391589-3391620	32	NZ_CP029356	Azospirillum sp. CFH 70021 plasmid unnamed1	89509-89540	9	0.719
NC_009952_3	3.24\|3391650\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391650-3391681	32	JN581942	Uncultured bacterium plasmid pHH2-227, complete sequence	32793-32824	9	0.719
NC_009952_3	3.24\|3391650\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391650-3391681	32	NC_010716	Salmonella enterica subsp. enterica serovar Dublin plasmid IncW pIE321, complete sequence	28070-28101	9	0.719
NC_009952_3	3.25\|3391711\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391711-3391742	32	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	391788-391819	9	0.719
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	416720-416751	9	0.719
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP020899	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence	133854-133885	9	0.719
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP018230	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence	503575-503606	9	0.719
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP016289	Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence	516795-516826	9	0.719
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP013529	Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence	124472-124503	9	0.719
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP013582	Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence	124472-124503	9	0.719
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	2251498-2251529	9	0.719
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	316607-316638	9	0.719
NC_009952_3	3.26\|3391772\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391772-3391803	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	140263-140294	9	0.719
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_HG917973	Mycobacterium marinum E11 plasmid pRAW, complete sequence	78318-78349	9	0.719
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_AP018497	Mycobacterium marinum strain ATCC 927 plasmid pMMRN, complete sequence	26543-26574	9	0.719
NC_009952_3	3.28\|3391894\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391894-3391925	32	NZ_CP024892	Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence	197521-197552	9	0.719
NC_009952_3	3.33\|3392199\|32\|NC_009952\|CRISPRCasFinder,CRT	3392199-3392230	32	MT152150	Pseudomonas phage 8P, complete genome	8108-8139	9	0.719
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	126133-126164	10	0.688
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP026539	Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence	120241-120272	10	0.688
NC_009952_3	3.4\|3390431\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390431-3390462	32	NZ_CP015231	Epibacterium mobile F1926 plasmid unnamed1, complete sequence	647829-647860	10	0.688
NC_009952_3	3.8\|3390675\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390675-3390706	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	789862-789893	10	0.688
NC_009952_3	3.10\|3390797\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390797-3390828	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1514262-1514293	10	0.688
NC_009952_3	3.20\|3391406\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391406-3391437	32	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1467781-1467812	10	0.688
NC_009952_3	3.20\|3391406\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391406-3391437	32	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	253336-253367	10	0.688
NC_009952_3	3.20\|3391406\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391406-3391437	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1177553-1177584	10	0.688
NC_009952_3	3.21\|3391467\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391467-3391498	32	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	863828-863859	10	0.688
NC_009952_3	3.23\|3391589\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391589-3391620	32	MN693993	Marine virus AFVG_250M418, complete genome	10576-10607	10	0.688
NC_009952_3	3.1\|3390248\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390248-3390279	32	NZ_CP034351	Streptomyces sp. W1SF4 plasmid p1, complete sequence	94343-94374	11	0.656
NC_009952_3	3.8\|3390675\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390675-3390706	32	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	791322-791353	11	0.656
NC_009952_3	3.8\|3390675\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390675-3390706	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1602518-1602549	11	0.656
NC_009952_3	3.10\|3390797\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3390797-3390828	32	MF668280	Mycobacterium phage Phabba, complete genome	130593-130624	11	0.656
NC_009952_3	3.27\|3391833\|32\|NC_009952\|PILER-CR,CRISPRCasFinder,CRT	3391833-3391864	32	NC_047707	Uncultured phage_MedDCM-OCT-S38-C3 DNA, complete genome, group G9, isolate: uvMED-CGR-U-MedDCM-OCT-S38-C3	1392-1423	11	0.656
NC_009952_3	3.33\|3392199\|32\|NC_009952\|CRISPRCasFinder,CRT	3392199-3392230	32	NZ_CP015739	Shinella sp. HZN7 plasmid pShin-03, complete sequence	125186-125217	11	0.656
NC_009952_3	3.33\|3392199\|32\|NC_009952\|CRISPRCasFinder,CRT	3392199-3392230	32	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	892674-892705	11	0.656
NC_009952_3	3.33\|3392199\|32\|NC_009952\|CRISPRCasFinder,CRT	3392199-3392230	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1335152-1335183	11	0.656

1. spacer 2.14|397316|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 4, identity: 0.867

aaagccgccctcgcctgcgcgtgtgagcgc-	CRISPR spacer
gatgccgccctcgcctgcacgtgt-agcgca	Protospacer
.* ***************.***** *****

2. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN813684 (Microbacterium phage Terij, complete genome) position: , mismatch: 4, identity: 0.875

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
gccgccggggcgctccggtcgccggggtgcat	Protospacer
* *.******** *************** ***

3. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MK937606 (Microbacterium phage Margaery, complete genome) position: , mismatch: 4, identity: 0.875

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
gccgccggggcgctccggtcgccggggtgcat	Protospacer
* *.******** *************** ***

4. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN508620 (UNVERIFIED: Pseudomonas phage E2005-24-39, complete genome) position: , mismatch: 5, identity: 0.833

ggagttcgc--gccctcctgctgaacggcgcc	CRISPR spacer
--ggtccgctggccctcctgctgaccggcgcc	Protospacer
  .**.***  ************* *******

5. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871461 (UNVERIFIED: Pseudomonas phage Pa-J, complete genome) position: , mismatch: 5, identity: 0.833

ggagttcgc--gccctcctgctgaacggcgcc	CRISPR spacer
--ggtccgctggccctcctgctgaccggcgcc	Protospacer
  .**.***  ************* *******

6. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT119376 (Pseudomonas phage chunk, complete genome) position: , mismatch: 5, identity: 0.833

ggagttcgc--gccctcctgctgaacggcgcc	CRISPR spacer
--ggtccgctggccctcctgctgaccggcgcc	Protospacer
  .**.***  ************* *******

7. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871458 (UNVERIFIED: Pseudomonas phage Pa-G, complete genome) position: , mismatch: 5, identity: 0.833

ggagttcgc--gccctcctgctgaacggcgcc	CRISPR spacer
--ggtccgctggccctcctgctgaccggcgcc	Protospacer
  .**.***  ************* *******

8. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871459 (UNVERIFIED: Pseudomonas phage Pa-H, complete genome) position: , mismatch: 5, identity: 0.833

ggagttcgc--gccctcctgctgaacggcgcc	CRISPR spacer
--ggtccgctggccctcctgctgaccggcgcc	Protospacer
  .**.***  ************* *******

9. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT118298 (Pseudomonas phage Epa21, complete genome) position: , mismatch: 5, identity: 0.833

ggagttcgc--gccctcctgctgaacggcgcc	CRISPR spacer
--ggtccgctggccctcctgctgaccggcgcc	Protospacer
  .**.***  ************* *******

10. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_042079 (Pseudomonas phage vB_PaeM_E217, complete genome) position: , mismatch: 5, identity: 0.833

ggagttcgc--gccctcctgctgaacggcgcc	CRISPR spacer
--ggtccgctggccctcctgctgaccggcgcc	Protospacer
  .**.***  ************* *******

11. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT118297 (Pseudomonas phage Epa20, complete genome) position: , mismatch: 5, identity: 0.833

ggagttcgc--gccctcctgctgaacggcgcc	CRISPR spacer
--ggtccgctggccctcctgctgaccggcgcc	Protospacer
  .**.***  ************* *******

12. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT118291 (Pseudomonas phage Epa12, complete genome) position: , mismatch: 5, identity: 0.833

ggagttcgc--gccctcctgctgaacggcgcc	CRISPR spacer
--ggtccgctggccctcctgctgaccggcgcc	Protospacer
  .**.***  ************* *******

13. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LC472884 (Pseudomonas phage S50 DNA, complete genome) position: , mismatch: 5, identity: 0.833

ggagttcgc--gccctcctgctgaacggcgcc	CRISPR spacer
--ggtccgctggccctcctgctgaccggcgcc	Protospacer
  .**.***  ************* *******

14. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_048745 (Pseudomonas phage vB_PaeM_SCUT-S1, complete genome) position: , mismatch: 5, identity: 0.833

ggagttcgc--gccctcctgctgaacggcgcc	CRISPR spacer
--ggtccgctggccctcctgctgaccggcgcc	Protospacer
  .**.***  ************* *******

15. spacer 2.18|397579|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 5, identity: 0.833

cgacaacgccgacgagagcggatacgcctg-	CRISPR spacer
cgacaacgccgacgagatcgga-gcgtttgt	Protospacer
***************** **** .**..**

16. spacer 2.18|397579|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 5, identity: 0.833

cgacaacgccgacgagagcggatacgcctg-	CRISPR spacer
cgacaacgccgacgagatcgga-gcgtttgt	Protospacer
***************** **** .**..**

17. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MK937608 (Microbacterium phage Cressida, complete genome) position: , mismatch: 5, identity: 0.844

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
ctcgccggggcgctccggtcgccggggtgcat	Protospacer
  *.******** *************** ***

18. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN813682 (Microbacterium phage Matzah, complete genome) position: , mismatch: 5, identity: 0.844

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
ctcgccggggcgctccggtcgccggggtgcat	Protospacer
  *.******** *************** ***

19. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MK937591 (Microbacterium phage Cinna, complete genome) position: , mismatch: 5, identity: 0.844

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
ctcgccggggcgctccggtcgccggggtgcat	Protospacer
  *.******** *************** ***

20. spacer 2.6|396789|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

tgaacc--catccgcgcctgcactctgacatg	CRISPR spacer
--atccagcagccgcgcctgcacgctgacatc	Protospacer
  * **  ** ************ *******

21. spacer 2.6|396789|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 6, identity: 0.8

tgaacc--catccgcgcctgcactctgacatg	CRISPR spacer
--atccagcagccgcgcctgcacgctgacatc	Protospacer
  * **  ** ************ *******

22. spacer 2.11|397118|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 6, identity: 0.8

-ctgcacgtcgcgcgctcacgccatgcctgc	CRISPR spacer
gccgt-tgtcgcgcccccacgccatgcctgc	Protospacer
 *.*. .******* *.**************

23. spacer 2.11|397118|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011518 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-1, complete sequence) position: , mismatch: 6, identity: 0.8

ctgca-cgtcgcgcgctcacgccatgcctgc	CRISPR spacer
-gacaccttcgcgcgctcacggcttgcctgc	Protospacer
  .** * ************* * *******

24. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MH271303 (Microbacterium phage MementoMori, complete genome) position: , mismatch: 6, identity: 0.812

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
cgggccggggcgctccggtcgccggggtgcat	Protospacer
 . .******** *************** ***

25. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.812

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
cacaccgggccgatcaggtcgccggggtcgac	Protospacer
 ******** ***** ************. *.

26. spacer 3.8|3390675|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014598 (Yangia sp. CCB-MM3 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

ttggacagcacctcgggatcgttgggcagcgt	CRISPR spacer
aggaacagcacctcgggatcggtggccagcgc	Protospacer
  *.***************** *** *****.

27. spacer 3.8|3390675|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

--ttggacagcacctcgggatcgttgggcagcgt	CRISPR spacer
ctttgaac--cacctcggcatcgttgggtagcgg	Protospacer
  ***.**  ******** *********.****

28. spacer 3.21|3391467|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041190 (Labrenzia sp. PHM005 plasmid p1BIR, complete sequence) position: , mismatch: 6, identity: 0.812

cgccgagcgttttggcgtgacggttagtgatc	CRISPR spacer
cgccgagcgtttgggcgtgacgtttaataacg	Protospacer
************ ********* ***.*.*.

29. spacer 3.23|3391589|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 6, identity: 0.812

ggcgcgct----cctgctggctgtggtggcgttcct	CRISPR spacer
----cgcttcggcctgctggcgctggtggcgttcct	Protospacer
    ****    *********  *************

30. spacer 3.32|3392138|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 6, identity: 0.812

aaggccccgctcgggccggactacgtgcgtca	CRISPR spacer
atggacccgctcgggccggacttcgtgcatac	Protospacer
* ** ***************** *****.*

31. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_004527 (Rhodobacter blasticus plasmid pMG160 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
ctcgttggccttctcccgcagctcgttggc	Protospacer
 *  ****** ************.****

32. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_022061 (Mycobacterium phage KayaCho, complete genome) position: , mismatch: 7, identity: 0.767

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
ggacccggccatctccagcagcttgtcgta	Protospacer
* ....********** *********.***

33. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 7, identity: 0.767

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
gcgcttggcaatctcacgcagcttgttcgt	Protospacer
*.*.***** ***** ***********

34. spacer 2.6|396789|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045177 (Streptomyces tsukubensis strain AT3 plasmid pST1, complete sequence) position: , mismatch: 7, identity: 0.767

tgaacccatccgcgcctgcactctg-acatg	CRISPR spacer
acaacccgtccgcgcctgcacgctgtgcac-	Protospacer
  *****.************* *** .**.

35. spacer 2.10|397052|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 7, identity: 0.767

ctgacgaacatcgccctgactgacgtaagt---	CRISPR spacer
ctgacgaacatcgccatgtctga---aaactta	Protospacer
*************** ** ****   **..

36. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LZ998054 (JP 2017534684-A/1: Phage Therapy) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

37. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MK837010 (Pseudomonas virus Pa204, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

38. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT133562 (Pseudomonas phage willy, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

39. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_011165 (Pseudomonas phage LBL3, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

40. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT108729 (Pseudomonas phage Epa22, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

41. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT491206 (Pseudomonas phage vB_PaeM_USP_3, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

42. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT491205 (Pseudomonas phage vB_PaeM_USP_2, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

43. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871485 (UNVERIFIED: Pseudomonas phage PaSz-8_45_66k, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

44. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871467 (UNVERIFIED: Pseudomonas phage Pa-P, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

45. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_041902 (Pseudomonas phage PA5, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

46. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871473 (UNVERIFIED: Pseudomonas virus Pa-Z, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

47. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871457 (UNVERIFIED: Pseudomonas phage Pa-F, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

48. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT933737 (Pseudomonas phage PASA16, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

49. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LC105987 (Pseudomonas phage KPP22 DNA, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

50. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT413450 (Pseudomonas phage Epa15, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

51. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871479 (UNVERIFIED: Pseudomonas phage PaSt-2_45_65k, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

52. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_019451 (Pseudomonas phage NH-4, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

53. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LC102730 (Pseudomonas phage S12-1 DNA, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

54. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LC472883 (Pseudomonas phage S12-3 DNA, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

55. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT118299 (Pseudomonas phage Epa25, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

56. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871464 (UNVERIFIED: Pseudomonas phage Pa-M, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

57. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KP340288 (Pseudomonas phage phiKTN6, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

58. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to FM201281 (Pseudomonas phage LBL3 complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

59. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT119368 (Pseudomonas phage shane, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

60. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KU198331 (Pseudomonas phage NP3, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

61. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN615701 (Pseudomonas phage vB_PaeM_SMS21, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

62. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KM434184 (Pseudomonas phage vB_Pae_PS44, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

63. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN131142 (Pseudomonas virus PA8P1, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

64. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT118290 (Pseudomonas phage Epa10, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

65. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_050146 (Pseudomonas phage Epa7, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

66. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_048676 (Pseudomonas phage SL1, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

67. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

68. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to GU815091 (Pseudomonas phage JG024, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

69. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LC472881 (Pseudomonas phage R12 DNA, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

70. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT108727 (Pseudomonas phage Epa11, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

71. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LQ277706 (Sequence 1 from Patent WO2016071503) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

72. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN131141 (Pseudomonas virus PaP1_EPu-2019, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

73. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871462 (UNVERIFIED: Pseudomonas virus Pa-K, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

74. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to FM201282 (Pseudomonas phage LMA2 complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

75. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT119363 (Pseudomonas phage debbie, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

76. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN615700 (Pseudomonas phage vB_PaeM_SMS12, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

77. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871509 (UNVERIFIED: Pseudomonas phage pasz5, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

78. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_019935 (Pseudomonas phage KPP12 DNA, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

79. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KX171208 (Pseudomonas phage vB_Pae436M-8, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

80. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KR054033 (Pseudomonas phage DL68, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

81. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

82. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LN610579 (Pseudomonas phage vB_PaeM_PAO1_Ab27, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

83. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871465 (UNVERIFIED: Pseudomonas virus Pa-N, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

84. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MK318076 (Pseudomonas phage vB_PaeM_fHoPae01, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

85. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LZ998059 (JP 2017534684-A/6: Phage Therapy) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

86. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LQ277711 (Sequence 6 from Patent WO2016071503) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

87. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871460 (UNVERIFIED: Pseudomonas phage Pa-I, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

88. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_011756 (Pseudomonas phage SN, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

89. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT119365 (Pseudomonas phage goodold, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

90. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LC105988 (Pseudomonas phage KPP22M1 DNA, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

91. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871487 (UNVERIFIED: Pseudomonas phage PaSz-9_45_65k, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

92. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT491204 (Pseudomonas phage vB_PaeM_USP_1, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

93. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KR869157 (Pseudomonas phage vB_PaeM_CEB_DP1, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

94. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN131143 (Pseudomonas virus PA11P1, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

95. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_048626 (Pseudomonas phage PA01 DNA, nearly complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

96. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LC105990 (Pseudomonas phage KPP22M3 DNA, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

97. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LC105989 (Pseudomonas phage KPP22M2 DNA, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

98. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_029005 (Streptomyces phage phiSAJS1, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
gacgaaggcgccctgctgctgaccggcgcc	Protospacer
*. *   ******* ******* *******

99. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT349888 (Pseudomonas phage PHW2, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

100. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MT133561 (Pseudomonas phage goonie, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

101. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871508 (UNVERIFIED: Pseudomonas phage pasz2, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

102. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN615702 (Pseudomonas phage vB_PaeM_SMS29, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

103. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MF623055 (Pseudomonas phage BrSP1, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

104. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_050147 (Pseudomonas phage Epa13, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

105. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MG897799 (Pseudomonas phage vB_PaeM_LS1, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

106. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_011166 (Pseudomonas phage LMA2, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

107. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN871466 (UNVERIFIED: Pseudomonas phage Pa-O, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

108. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_042080 (Pseudomonas phage vB_PaeM_E215, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

109. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_050148 (Pseudomonas virus Pa193, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

110. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KP340287 (Pseudomonas phage phiKT28, complete genome) position: , mismatch: 7, identity: 0.767

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
ggcccgctggccctcctgctgaccggcgcc	Protospacer
**  . *  ************* *******

111. spacer 2.14|397316|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

aaagccgccctcgcctgcgcgtgtgagcgc	CRISPR spacer
cgggccgccgtggcctgcgcgtgtgaatgc	Protospacer
 ..****** * **************..**

112. spacer 2.16|397448|29|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY433363 (Proteus mirabilis strain R997 plasmid pR997, complete sequence) position: , mismatch: 7, identity: 0.759

acaaagaaagacggtaacgggaaagagcg	CRISPR spacer
catcagaatgacggtaacggtaaagagca	Protospacer
    **** *********** *******.

113. spacer 2.17|397513|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021084 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence) position: , mismatch: 7, identity: 0.767

gtggcggtgaatttcggcgggtttgccgag	CRISPR spacer
tgggtcctgaatctcggcgtgtttgccgag	Protospacer
  **.  *****.****** **********

114. spacer 2.17|397513|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LC528882 (Burkholderia phage FLC5 DNA, complete genome) position: , mismatch: 7, identity: 0.767

gtggcgg--tgaatttcggcgggtttgccgag	CRISPR spacer
--ggcaatttgaatttcggcgggttggccgtt	Protospacer
  ***..  **************** ****

115. spacer 2.18|397579|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 7, identity: 0.767

cgacaacgccgacgagagcggatacgcctg	CRISPR spacer
cggtcctgccgacgaaagcggatacgccgg	Protospacer
**..  .********.************ *

116. spacer 2.18|397579|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050100 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b3, complete sequence) position: , mismatch: 7, identity: 0.767

cgacaacgccgacgagagcggatacgcctg	CRISPR spacer
cggtcctgccgacgaaagcggatacgccgg	Protospacer
**..  .********.************ *

117. spacer 2.18|397579|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049733 (Rhizobium leguminosarum strain A1 plasmid pRL10, complete sequence) position: , mismatch: 7, identity: 0.767

cgacaacgccgacgagagcggatacgcctg	CRISPR spacer
cggtcctgccgacgaaagcggatacgccgg	Protospacer
**..  .********.************ *

118. spacer 2.18|397579|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053443 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence) position: , mismatch: 7, identity: 0.767

cgacaacgccgacgagagcggatacgcctg	CRISPR spacer
cggtcctgccgacgaaagcggatacgccgg	Protospacer
**..  .********.************ *

119. spacer 2.18|397579|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054026 (Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence) position: , mismatch: 7, identity: 0.767

cgacaacgccgacgagagcggatacgcctg	CRISPR spacer
cggtcctgccgacgaaagcggatacgccgg	Protospacer
**..  .********.************ *

120. spacer 2.18|397579|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 7, identity: 0.767

cgacaacgccgacgagagcggatacgcctg	CRISPR spacer
cggtcctgccgacgaaagcggatacgccgg	Protospacer
**..  .********.************ *

121. spacer 2.18|397579|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016291 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.767

cgacaacgccgacgagagcggatacgcctg	CRISPR spacer
cggtcctgccgacgaaagcggatacgccgg	Protospacer
**..  .********.************ *

122. spacer 2.18|397579|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 7, identity: 0.767

cgacaacgccgacgagagcggatacgcctg	CRISPR spacer
cggtcctgccgacgaaagcggatacgccgg	Protospacer
**..  .********.************ *

123. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
accagcaggccggcggccagcgacaccaccag	Protospacer
. ** *.  ********** ************

124. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 7, identity: 0.781

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
accagcaggccggcggccagcgacaccaccag	Protospacer
. ** *.  ********** ************

125. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 7, identity: 0.781

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
accagcaggccggcggccagcgacaccaccag	Protospacer
. ** *.  ********** ************

126. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047236 (Gordonia sp. JH63 plasmid pJH63-1, complete sequence) position: , mismatch: 7, identity: 0.781

----ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
tcccggt----ccccgtcggccaccgacaccagcag	Protospacer
    **.    ***** *************** ***

127. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 7, identity: 0.781

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
ccgagcgcgacgatccggtcgccggggttcag	Protospacer
   * ** *.*********************

128. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041043 (Paracoccus sp. AK26 plasmid pAK3, complete sequence) position: , mismatch: 7, identity: 0.781

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
gacagatccgcgatcccctcgccggggttcat	Protospacer
****     *******  **************

129. spacer 3.6|3390553|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 7, identity: 0.781

ctgctgacgcgcctggccggggcgctggatgc	CRISPR spacer
ctgctgacgcgcctcgccgcggcgaagtcggc	Protospacer
************** **** ****  *   **

130. spacer 3.6|3390553|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ctgctgacgcgcctggccggggcgctggatgc	CRISPR spacer
ctgctggcgcggctggccggggcggcgcaggg	Protospacer
******.**** ************ .* * *

131. spacer 3.6|3390553|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

ctgctgacgcgcctggccggggcgctggatgc	CRISPR spacer
ctgctggcgcggctggccggggcggcgcaggg	Protospacer
******.**** ************ .* * *

132. spacer 3.6|3390553|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 7, identity: 0.781

ctgctgacgcgcctggccggggcgctggatgc	CRISPR spacer
ctgctggcgcggctggccggggcggcgcaggg	Protospacer
******.**** ************ .* * *

133. spacer 3.10|3390797|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034352 (Streptomyces sp. W1SF4 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

ccgtcctggtcctcgaacacccccgcgccggg	CRISPR spacer
cccggacggtcctcgaacacgcccgcgccgag	Protospacer
**    .************* *********.*

134. spacer 3.10|3390797|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011275 (Planctomyces sp. SH-PL62 plasmid pPL62-2, complete sequence) position: , mismatch: 7, identity: 0.781

ccgtcctg--gtcctcgaacacccccgcgccggg	CRISPR spacer
--atccgggagtcctcgaacacctcctcgccggt	Protospacer
  .*** *  *************.** ******

135. spacer 3.11|3390858|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 7, identity: 0.781

tgtcctatgccgtcgaaaaagccgccaaagcc	CRISPR spacer
cgcgcttcgccctcgaaaaagccgcaaaagcc	Protospacer
.*. ** .*** ************* ******

136. spacer 3.11|3390858|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 7, identity: 0.781

tgtcctatgccgtcgaaaaagccgccaaagcc	CRISPR spacer
ttgccattgccgtcgaaaaagccgccggagcg	Protospacer
*  **  *******************..***

137. spacer 3.20|3391406|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022365 (Azospirillum sp. TSH58 plasmid TSH58_p06, complete sequence) position: , mismatch: 7, identity: 0.781

atccgcatcatcgccacggagtccggcgccgc	CRISPR spacer
ctccaggccatcgccacggcgtccgccgccgc	Protospacer
 ***. ..*********** ***** ******

138. spacer 3.23|3391589|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018784 (Curtobacterium pusillum strain AA3 plasmid pCPAA3, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgcgctcctgctggctgtggtggcgttcct	CRISPR spacer
ggccgcggcctgctggcggtcgtggcgttcct	Protospacer
***     ********* ** ***********

139. spacer 3.23|3391589|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 7, identity: 0.781

-ggcgcgctcctgctggctgtggtggcgttcct	CRISPR spacer
cggcatg-tccttctggctgtggtggctttcta	Protospacer
 ***..* **** ************** ***.

140. spacer 3.23|3391589|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_014157 (Salinibacter ruber M8 plasmid pSR84, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgcgctcctgctggctgtggtggcgttcct	CRISPR spacer
cgcgcgctcctgctggcggtgctgcccgccct	Protospacer
 **************** *** ** *  .***

141. spacer 3.33|3392199|32|NC_009952|CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgcgagcgcttcctgcacatcgctgggtgg	CRISPR spacer
agcgcgagcgcttccggcacctcgagcgctgg	Protospacer
.************** **** ***   * ***

142. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to CP053333 (Salmonella enterica subsp. diarizonae serovar 47:k:z35 strain 2009K1094 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
tcatcaggccatctcccgcagcttgttcgg	Protospacer
 ..*. *********************  .

143. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KJ419279 (Enterobacteria phage 9g, complete genome) position: , mismatch: 8, identity: 0.733

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
gctgggcgccatctctcgcagcttgttgaa	Protospacer
*.     ********.************ *

144. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MK373794 (Escherichia phage vB_EcoS_HdK1, complete genome) position: , mismatch: 8, identity: 0.733

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
gctgggcgccatctctcgcagcttgttgaa	Protospacer
*.     ********.************ *

145. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MK373795 (Escherichia phage vB_EcoS_HdSG1, complete genome) position: , mismatch: 8, identity: 0.733

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
gctgggcgccatctctcgcagcttgttgaa	Protospacer
*.     ********.************ *

146. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_029021 (Enterobacteria phage JenK1, complete genome) position: , mismatch: 8, identity: 0.733

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
gctgggcgccatctctcgcagcttgttgaa	Protospacer
*.     ********.************ *

147. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to AB916497 (Ralstonia phage RS138 DNA, complete genome) position: , mismatch: 8, identity: 0.733

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
acgggcgtccatctcctgcagcttgttgtc	Protospacer
..*  .* ********.************

148. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
acgggcgtccatctcctgcagcttgttgtc	Protospacer
..*  .* ********.************

149. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
acgggcgtccatctcctgcagcttgttgtc	Protospacer
..*  .* ********.************

150. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
acgggcgtccatctcctgcagcttgttgtc	Protospacer
..*  .* ********.************

151. spacer 2.4|396658|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gtgtttggccatctcccgcagcttgttgta	CRISPR spacer
acgggcgtccatctcctgcagcttgttgtc	Protospacer
..*  .* ********.************

152. spacer 2.5|396724|29|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042825 (Rhizobium sp. WL3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.724

cgcacaaaagctcgtagctgatctgaaag	CRISPR spacer
cgcacaaaaggtcgtcgctgatcgccggc	Protospacer
********** **** *******   ..

153. spacer 2.10|397052|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.733

ctgacgaacatcgccctgactgacgtaagt	CRISPR spacer
aagacgatcatcgccctgaccgacggcaac	Protospacer
  ***** ************.****  *..

154. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
gatcgacgcgccctcctgcggaacgccgcg	Protospacer
*.    ************* ***** ***

155. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
gatcgacgcgccctcctgcggaacgccgcg	Protospacer
*.    ************* ***** ***

156. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 8, identity: 0.733

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
gatcgacgcgccctcctgcggaacgccgcg	Protospacer
*.    ************* ***** ***

157. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.733

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
gatcgacgcgccctcctgcggaacgccgcg	Protospacer
*.    ************* ***** ***

158. spacer 2.13|397250|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.733

ggagttcgcgccctcctgctgaacggcgcc	CRISPR spacer
cgcaagcgcgccttcctgctgatcggcgcg	Protospacer
 * .  ******.********* ******

159. spacer 2.14|397316|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 8, identity: 0.733

aaagccgccctcgcctgcgcgtgtgagcgc	CRISPR spacer
cgaggtcttctcgcctgcgcgtgtgcgcgc	Protospacer
 .** . ..**************** ****

160. spacer 2.15|397382|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KY783914 (Mycobacterium phage GardenSalsa, complete genome) position: , mismatch: 8, identity: 0.733

accgccgcgttgcctttcgcggctgaatag	CRISPR spacer
accgtcgggttgcctttcgcggccaaccgt	Protospacer
****.** ***************..* ..

161. spacer 2.15|397382|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KY223999 (Mycobacterium phage MrMagoo, complete genome) position: , mismatch: 8, identity: 0.733

accgccgcgttgcctttcgcggctgaatag	CRISPR spacer
accgtcgggttgcctttcgcggccaaccgt	Protospacer
****.** ***************..* ..

162. spacer 2.18|397579|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025017 (Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence) position: , mismatch: 8, identity: 0.733

cgacaacgccgacgagagcggatacgcctg	CRISPR spacer
ctgtcctgccgacgaaagcggatacgccgg	Protospacer
* ..  .********.************ *

163. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_015952 (Streptomyces violaceusniger Tu 4113 plasmid pSTRVI02, complete sequence) position: , mismatch: 8, identity: 0.75

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
aacggagccccggtgaccaccgacaccaccac	Protospacer
..*.  *******.*.***************

164. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 8, identity: 0.75

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
cggctcgacccgccggccaccgacaccgtctg	Protospacer
 *  *** **** **************..* *

165. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040720 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
aacatcgccccggccgccaccgacatccgctc	Protospacer
..************ **********.*  *

166. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022542 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-2, complete sequence) position: , mismatch: 8, identity: 0.75

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
gtctcggccccggcggccagccacaccaccga	Protospacer
* * . ************* * ********..

167. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 8, identity: 0.75

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
gcggtctccccggcggccaccgactccagccc	Protospacer
*  .** ***************** *** *

168. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
accagcaggcccgcggccagcgacaccaccag	Protospacer
. ** *.  ** ******* ************

169. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
cgctcctcggccttccggtcgccggggttcag	Protospacer
 .* **  ***  ******************

170. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

171. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

172. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

173. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

174. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

175. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

176. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

177. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

178. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

179. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

180. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

181. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

182. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

183. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

184. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

185. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

186. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

187. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

188. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

189. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

190. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

191. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

192. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

193. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

194. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

195. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

196. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

197. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045548 (Streptomyces sp. SYP-A7193 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
gacacggcggcgatccggtcgccgacgatgcc	Protospacer
***** * ****************. * *  .

198. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
aacaccggggcgatcctgtcgcgggactgcgc	Protospacer
.*************** ***** **. * *..

199. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
cgctcctcggccttccggtcgccggggttcag	Protospacer
 .* **  ***  ******************

200. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
cgctcctcggccttccggtcgccggggttcag	Protospacer
 .* **  ***  ******************

201. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_009479 (Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid pCM2, complete sequence) position: , mismatch: 8, identity: 0.75

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
atcaccggggcgagccggttgccggcgcgcag	Protospacer
. *********** *****.***** *. **

202. spacer 3.6|3390553|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032323 (Azospirillum brasilense strain MTCC4035 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.75

ctgctgacgcgcctggccggggcgctggatgc	CRISPR spacer
ctgctgacgcgcctcgccgcggcaaagacggc	Protospacer
************** **** ***.  *.  **

203. spacer 3.6|3390553|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 8, identity: 0.75

ctgctgacgcgcctggccggggcgctggatgc	CRISPR spacer
ctgctgacgcgcctcgccgcggcaaagacggc	Protospacer
************** **** ***.  *.  **

204. spacer 3.8|3390675|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 8, identity: 0.75

ttggacagcacctcgggatcgttgggcagcgt	CRISPR spacer
ccggcaagcacctcgggatcgtcgcgcagctc	Protospacer
..**  ****************.* ***** .

205. spacer 3.11|3390858|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015989 (Sphingobium sp. EP60837 plasmid pEP2, complete sequence) position: , mismatch: 8, identity: 0.75

tgtcctatgccgtcgaaaaagccgccaaagcc	CRISPR spacer
agcaggatgccgtcgaagaagccgcccaaggc	Protospacer
 *.   ***********.******** *** *

206. spacer 3.16|3391163|31|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039641 (Azospirillum sp. TSH100 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.742

ttgaacccctcggcccacccgacgggcaagg	CRISPR spacer
ctgaaccactcggccgacccgacgctgctgg	Protospacer
.****** ******* ********     **

207. spacer 3.16|3391163|31|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 8, identity: 0.742

ttgaacccctcggcccacccgacgggcaagg	CRISPR spacer
tggtacccctcggccgacccggcgggcctcc	Protospacer
* * *********** *****.*****

208. spacer 3.20|3391406|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atccgcatcatcgccacggagtccggcgccgc	CRISPR spacer
taccggatcatcgccaaggagtccgggctggc	Protospacer
  *** ********** *********  . **

209. spacer 3.20|3391406|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 8, identity: 0.75

atccgca-tcatcgccacggagtccggcgccgc	CRISPR spacer
-tcgtcgcccatcaccgcggagtccggcgccgg	Protospacer
 **  *. .****.**.***************

210. spacer 3.20|3391406|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 8, identity: 0.75

atccgca-tcatcgccacggagtccggcgccgc	CRISPR spacer
-tcgtcgcccatcaccgcggagtccggcgccgg	Protospacer
 **  *. .****.**.***************

211. spacer 3.20|3391406|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN813686 (Mycobacterium phage BirdsNest, complete genome) position: , mismatch: 8, identity: 0.75

atccgc--atcatcgccacggagtccggcgccgc	CRISPR spacer
--ccgtcgatcatcgtcacggggtccggcgcgag	Protospacer
  ***.  *******.*****.********* .

212. spacer 3.21|3391467|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013369 (Burkholderia ubonensis strain RF23-BP41 plasmid pRF23, complete sequence) position: , mismatch: 8, identity: 0.75

cgccgagcgttttggcgtgacggttagtgatc	CRISPR spacer
cgccgagcgtcttggcgtgacggcccggcacg	Protospacer
**********.************.. *  *.

213. spacer 3.24|3391650|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KY549153 (Rhodococcus phage AngryOrchard, complete genome) position: , mismatch: 8, identity: 0.75

ggcggcaagggtgacactatcgaggatctggt	CRISPR spacer
gtcgtgaagggtgacccgatcgaggatctcac	Protospacer
* **  ********* * *********** ..

214. spacer 3.24|3391650|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN945902 (Rhodococcus phage Dinger, complete genome) position: , mismatch: 8, identity: 0.75

ggcggcaagggtgacactatcgaggatctggt	CRISPR spacer
gtcgtgaagggtgacccgatcgaggatctcac	Protospacer
* **  ********* * *********** ..

215. spacer 3.24|3391650|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MH271315 (Rhodococcus phage Takoda, complete genome) position: , mismatch: 8, identity: 0.75

ggcggcaagggtgacactatcgaggatctggt	CRISPR spacer
gtcgtgaagggtgacccgatcgaggatctcac	Protospacer
* **  ********* * *********** ..

216. spacer 3.24|3391650|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MF324903 (Rhodococcus phage AppleCloud, complete genome) position: , mismatch: 8, identity: 0.75

ggcggcaagggtgacactatcgaggatctggt	CRISPR spacer
gtcgtgaagggtgacccgatcgaggatctcac	Protospacer
* **  ********* * *********** ..

217. spacer 3.24|3391650|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to KX712237 (Rhodococcus phage Partridge, complete genome) position: , mismatch: 8, identity: 0.75

ggcggcaagggtgacactatcgaggatctggt	CRISPR spacer
gtcgtgaagggtgacccgatcgaggatctcac	Protospacer
* **  ********* * *********** ..

218. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcccggcaatcc	Protospacer
** ***************** *** . **  .

219. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050099 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b5, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcccggtaatcc	Protospacer
** ***************** *** . **  .

220. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcccggcaatcc	Protospacer
** ***************** *** . **  .

221. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcccggcaatcc	Protospacer
** ***************** *** . **  .

222. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049732 (Rhizobium leguminosarum strain A1 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcccggcaatcc	Protospacer
** ***************** *** . **  .

223. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcccggtaatcc	Protospacer
** ***************** *** . **  .

224. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcccggcaatcc	Protospacer
** ***************** *** . **  .

225. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048282 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248d, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcccggcaatcc	Protospacer
** ***************** *** . **  .

226. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcccggcaatcc	Protospacer
** ***************** *** . **  .

227. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcccggcaatcc	Protospacer
** ***************** *** . **  .

228. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 8, identity: 0.75

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcccggcaatcc	Protospacer
** ***************** *** . **  .

229. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
ccggtggtcactgcgaccgccagcagcgccat	Protospacer
   * ** ************** *******.

230. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT703507 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 3) position: , mismatch: 8, identity: 0.75

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
cgcagcagcaccgcgaccgccaccagccccgc	Protospacer
 **.. .****.*************** ***

231. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015280 (Mycobacterium chimaera strain DSM 44623 plasmid unnamed 2, complete sequence) position: , mismatch: 8, identity: 0.75

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
cgcagcagcaccgcgaccgccaccagccccgc	Protospacer
 **.. .****.*************** ***

232. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015273 (Mycobacterium chimaera strain ZUERICH-1 plasmid unnamed 1, complete sequence) position: , mismatch: 8, identity: 0.75

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
cgcagcagcaccgcgaccgccaccagccccgc	Protospacer
 **.. .****.*************** ***

233. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023153 (Mycobacterium chimaera strain FLAC0070 plasmid pFLAC0070_2, complete sequence) position: , mismatch: 8, identity: 0.75

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
cgcagcagcaccgcgaccgccaccagccccgc	Protospacer
 **.. .****.*************** ***

234. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_020275 (Mycobacterium intracellulare subsp. yongonense 05-1390 plasmid pMyong1, complete sequence) position: , mismatch: 8, identity: 0.75

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
cgcagcagcaccgcgaccgccaccagccccgc	Protospacer
 **.. .****.*************** ***

235. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029333 (Mycobacterium avium subsp. hominissuis strain MAC109 plasmid pMAC109a, complete sequence) position: , mismatch: 8, identity: 0.75

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
cgcagcagcaccgcgaccgccaccagccccgc	Protospacer
 **.. .****.*************** ***

236. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019224 (Mycobacterium chimaera strain CDC 2015-22-71 plasmid pDHQP20152271_1, complete sequence) position: , mismatch: 8, identity: 0.75

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
cgcagcagcaccgcgaccgccaccagccccgc	Protospacer
 **.. .****.*************** ***

237. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045964 (Mycobacterium chimaera strain AUSMDU00007395 plasmid pAUSMDU00007395_01, complete sequence) position: , mismatch: 8, identity: 0.75

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
cgcagcagcaccgcgaccgccaccagccccgc	Protospacer
 **.. .****.*************** ***

238. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_022654 (Mycobacterium kansasii ATCC 12478 plasmid pMK12478, complete sequence) position: , mismatch: 8, identity: 0.75

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
cgcagcagcaccgcgaccgccaccagccccgc	Protospacer
 **.. .****.*************** ***

239. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

agcga-gggcactgcgaccgccaccagcgccga	CRISPR spacer
-gtgatcggcactgcgaccgcgaacagcgcgtc	Protospacer
 *.**  ************** * ******

240. spacer 3.33|3392199|32|NC_009952|CRISPRCasFinder,CRT matches to NZ_CP010991 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgcgagcgcttcctgcacatcgctgggtgg	CRISPR spacer
cccgcgagcgcctcctgcacttcgctgacagc	Protospacer
  *********.******** ******.  *

241. spacer 3.33|3392199|32|NC_009952|CRISPRCasFinder,CRT matches to NC_014007 (Sphingobium japonicum UT26S plasmid pCHQ1, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgcgagcgcttcctgcacatcgctgggtgg	CRISPR spacer
gccgcaagcgcttcctgctcatcgcgcgccag	Protospacer
* ***.************ ******  * ..*

242. spacer 2.10|397052|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.7

ctgacgaacatcgccctgactgacgtaagt	CRISPR spacer
ggaacgaacatggccctgaccgacgtggcg	Protospacer
  .******** ********.*****..

243. spacer 2.10|397052|30|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.7

ctgacgaacatcgccctgactgacgtaagt	CRISPR spacer
ggaacgaacatggccctgaccgacgtggcg	Protospacer
  .******** ********.*****..

244. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015236 (Rhodococcus fascians D188 plasmid pFiD188, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
aaagctacccaggcggccaccgacaccaccaa	Protospacer
.. ....*** ********************.

245. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
acggtcgccccggccgccaacgacaccacgcc	Protospacer
.  .********** **** *********

246. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
cgcatcgccgcggcggcctccgacaggttgac	Protospacer
 ******** ******** ******   . *

247. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
acggtcgccccggccgccaacgacaccacgcc	Protospacer
.  .********** **** *********

248. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
acggtcgccccggccgccaacgacaccacgcc	Protospacer
.  .********** **** *********

249. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047236 (Gordonia sp. JH63 plasmid pJH63-1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
taggtcgccccggcggtcaccggcaccattgg	Protospacer
 . .************.*****.*****...*

250. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
atcgtcgccaccgcggccaccgacaccggcct	Protospacer
. *.***** * ***************. *

251. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
atcgtcgccaccgcggccaccgacaccggcct	Protospacer
. *.***** * ***************. *

252. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020556 (Streptomyces sp. Sge12 plasmid pSGE, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
gaggcggccgcggcggccgccgacaccaccga	Protospacer
*. .. *** ********.***********..

253. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
atcgtcgccaccgcggccaccgacaccggcct	Protospacer
. *.***** * ***************. *

254. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024582 (Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
ggcatcgcccaggcggccatcgatggcggcga	Protospacer
********** ********.***.. *. *..

255. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
aacatcgacccggcggccatcgacatggccct	Protospacer
..***** ***********.*****. .**

256. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
ttcggcatcccggcggccaccgtcaccgccac	Protospacer
  *. *..************** ****.***

257. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
aacatcgacccggcggccatcgacatggccct	Protospacer
..***** ***********.*****. .**

258. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
ggcatcgcccaggcggccatcgatggcggcga	Protospacer
********** ********.***.. *. *..

259. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016381 (Aeromonas hydrophila strain AHNIH1 plasmid pASP-135, complete sequence) position: , mismatch: 9, identity: 0.719

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
gaggagcctgcgatcccgtcggcggggttcat	Protospacer
** .     ******* **** **********

260. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to HQ332136 (Dunaliella viridis virus SI2 genomic sequence) position: , mismatch: 9, identity: 0.719

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
cgcccgctggcgatccggccgccgggtttcag	Protospacer
 .* *   **********.******* ****

261. spacer 3.6|3390553|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ctgctgacgcgcctggccggggcgctggatgc	CRISPR spacer
aaggatgcgcgcctgggcggcgcgctggatga	Protospacer
  *   .********* *** **********

262. spacer 3.6|3390553|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ctgctgacgcgcctggccggggcgctggatgc	CRISPR spacer
gtccggacgcggctcgccggggcgctggccca	Protospacer
 * * ****** ** ************* .

263. spacer 3.6|3390553|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ctgctgacgcgcctggccggggcgctggatgc	CRISPR spacer
cgcgtggcgcgcctggccggcgcgctgaagaa	Protospacer
*   **.************* ******.* .

264. spacer 3.6|3390553|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN855586 (Bacteriophage sp. isolate 117, complete genome) position: , mismatch: 9, identity: 0.719

ctgctgacgcgcctggccggggcgctggatgc	CRISPR spacer
ggtccacggcggctggccggggcactggatgc	Protospacer
   *..  *** ***********.********

265. spacer 3.8|3390675|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 9, identity: 0.719

ttggacagcacctcgggatcgttgggcagcgt	CRISPR spacer
ggaatcagcacgtcgggatcgtagggcagggg	Protospacer
  .. ****** ********** ****** *

266. spacer 3.10|3390797|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

ccgtcctgg-------tcctcgaacacccccgcgccggg	CRISPR spacer
-------ggttaagcatcctcgtaaacccccgcgccggg	Protospacer
       **       ****** * **************

267. spacer 3.16|3391163|31|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.71

ttgaacccctcggcccacccgacgggcaagg	CRISPR spacer
attcgaccctcggcgcacccgacgggcacca	Protospacer
 *  . ******** *************  .

268. spacer 3.16|3391163|31|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 9, identity: 0.71

ttgaacccctcggcccacccgacgggcaagg	CRISPR spacer
cacggccgctcggcccacccgaccggcaacc	Protospacer
.  ..** *************** *****

269. spacer 3.16|3391163|31|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 9, identity: 0.71

ttgaacccctcggcccacccgacgggcaagg	CRISPR spacer
cacggccgctcggcccacccgaccggcaacc	Protospacer
.  ..** *************** *****

270. spacer 3.17|3391223|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 9, identity: 0.719

ccacccgaaaccagcggcctggatgaattcac	CRISPR spacer
aatcgggtaaccagcggcctgcaggaattcag	Protospacer
   *  * ************* * *******

271. spacer 3.17|3391223|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_008697 (Nocardioides sp. JS614 plasmid pNOCA01, complete sequence) position: , mismatch: 9, identity: 0.719

ccacccgaaaccagcggcctggatgaattcac	CRISPR spacer
cggcccgagaccagcggcctggttgatctggt	Protospacer
* .*****.************* *** .* ..

272. spacer 3.19|3391345|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 9, identity: 0.719

agtgggatcgcttgatccgcgaccgtttcacc	CRISPR spacer
gataccatcgcgtgatccgcgaccgtatcggc	Protospacer
..*.  ***** ************** **. *

273. spacer 3.20|3391406|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020371 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence) position: , mismatch: 9, identity: 0.719

atccgcatcatcgccacggagtccggcgccgc	CRISPR spacer
gcccgcatcaccgccacggggtccgacagcag	Protospacer
..********.********.*****.*. *.

274. spacer 3.20|3391406|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 9, identity: 0.719

atccgcatcatcgccacggagtccggcgccgc	CRISPR spacer
cacgagatcgtcgccacggaggccggcgcggt	Protospacer
  * . ***.*********** ******* *.

275. spacer 3.21|3391467|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 9, identity: 0.719

cgccgagcgttttggcgtgacggttagtgatc	CRISPR spacer
cgccgagcgtttcggcgtgaccgtcggccggt	Protospacer
************.******** **..*. . .

276. spacer 3.21|3391467|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017424 (Arthrobacter sp. ZXY-2 plasmid pZXY23, complete sequence) position: , mismatch: 9, identity: 0.719

cgccgagcgttttggcgtgacg-----gttagtgatc	CRISPR spacer
cgctgagcgtttgggcgtgacggacacgccag-----	Protospacer
***.******** *********     *..**

277. spacer 3.23|3391589|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029356 (Azospirillum sp. CFH 70021 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

ggcgcgctcctgctggctgtggtggcgttcct	CRISPR spacer
ccgatcctcctgctggcggtggtggcggtctt	Protospacer
   .. *********** ********* **.*

278. spacer 3.24|3391650|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to JN581942 (Uncultured bacterium plasmid pHH2-227, complete sequence) position: , mismatch: 9, identity: 0.719

ggcggcaagggtgacactatcgaggatctggt	CRISPR spacer
atccttgacggtgacactatcgacgttctggt	Protospacer
. *  ..* ************** * ******

279. spacer 3.24|3391650|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_010716 (Salmonella enterica subsp. enterica serovar Dublin plasmid IncW pIE321, complete sequence) position: , mismatch: 9, identity: 0.719

ggcggcaagggtgacactatcgaggatctggt	CRISPR spacer
atccttgacggtgacactatcgacgttctggt	Protospacer
. *  ..* ************** * ******

280. spacer 3.25|3391711|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 9, identity: 0.719

gcgattacgaaaagcacctgacctatatcgag	CRISPR spacer
agtcatacgaaaagaacctgaccgatatccgg	Protospacer
.    ********* ******** ***** .*

281. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 9, identity: 0.719

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagccgggcaatcc	Protospacer
** ***************** **  . **  .

282. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020899 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5c, complete sequence) position: , mismatch: 9, identity: 0.719

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gatatggccgatatggtcgatcgccagcggca	Protospacer
*  ************ ****** ***. .*

283. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagcctggcaatcc	Protospacer
** ***************** **. . **  .

284. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gccatggccgatatgctcgagccgggcaatcc	Protospacer
** ***************** **  . **  .

285. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013529 (Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence) position: , mismatch: 9, identity: 0.719

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gatatggccgatatggtcgatcgccagcggca	Protospacer
*  ************ ****** ***. .*

286. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013582 (Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence) position: , mismatch: 9, identity: 0.719

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gatatggccgatatggtcgatcgccagcggca	Protospacer
*  ************ ****** ***. .*

287. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 9, identity: 0.719

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gatatggccgatatggtcgatcgccaggggca	Protospacer
*  ************ ****** ***...*

288. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 9, identity: 0.719

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gatatggccgatatggtcgatcgccagcggca	Protospacer
*  ************ ****** ***. .*

289. spacer 3.26|3391772|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.719

gcaatggccgatatgctcgatccccaaaaggt	CRISPR spacer
gatatggccgatatggtcgatcgccaggggca	Protospacer
*  ************ ****** ***...*

290. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG917973 (Mycobacterium marinum E11 plasmid pRAW, complete sequence) position: , mismatch: 9, identity: 0.719

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
cgcagcaacaccgcgaccgccaccagccccgc	Protospacer
 **.. ..***.*************** ***

291. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018497 (Mycobacterium marinum strain ATCC 927 plasmid pMMRN, complete sequence) position: , mismatch: 9, identity: 0.719

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
cgcagcaacaccgcgaccgccaccagccccgc	Protospacer
 **.. ..***.*************** ***

292. spacer 3.28|3391894|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024892 (Rhodococcus ruber strain YYL plasmid pYYL1.1, complete sequence) position: , mismatch: 9, identity: 0.719

agcgagggcactgcgaccgccaccagcgccga	CRISPR spacer
tgaatcgccaccgcgaccgccaccatcgccgc	Protospacer
 * .  * ***.************* *****

293. spacer 3.33|3392199|32|NC_009952|CRISPRCasFinder,CRT matches to MT152150 (Pseudomonas phage 8P, complete genome) position: , mismatch: 9, identity: 0.719

ggcgcgagcgcttcctgcacatcgctgggtgg	CRISPR spacer
atcaaccgcgcttactgcgcatcgctgggtga	Protospacer
. *.   ****** ****.************.

294. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
gctccgagcccggctgccaccgccaccaccat	Protospacer
* . . . ****** ******* ********

295. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026539 (Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR1, complete sequence) position: , mismatch: 10, identity: 0.688

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
cctgcgggaccggcggccacggacaccgccag	Protospacer
  ... *  *********** ******.****

296. spacer 3.4|3390431|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015231 (Epibacterium mobile F1926 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gacaccggggcgatccggtcgccggggttcat	CRISPR spacer
tcgcctttggcgacgcggtcgccggggttcag	Protospacer
    *.  *****. ****************

297. spacer 3.8|3390675|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 10, identity: 0.688

ttggacagcacctcgggatcgttgggcagcgt	CRISPR spacer
ggttccagcaccttggcatcgttgggcaccac	Protospacer
     ********.** *********** *..

298. spacer 3.10|3390797|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ccgtcctggtcctcgaacacccccgcgccggg	CRISPR spacer
ggatggccgtcctcgatcacccccgcgtcggc	Protospacer
  .*  . ******** **********.***

299. spacer 3.20|3391406|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.688

atccgcatcatcgccacggagtccggcgccgc	CRISPR spacer
gttggcatcatcgccacggagcgcggctggaa	Protospacer
.*. *****************. ****   .

300. spacer 3.20|3391406|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 10, identity: 0.688

atccgcatcatcgccacggagtccggcgccgc	CRISPR spacer
gttggcatcatcgccacggagcgcggctggaa	Protospacer
.*. *****************. ****   .

301. spacer 3.20|3391406|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 10, identity: 0.688

atccgcatcatcgccacggagtccggcgccgc	CRISPR spacer
cccatggccatcgccaccgagaccggcgccga	Protospacer
 .*   ..********* *** *********

302. spacer 3.21|3391467|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgccgagcgttttggcgtgacggttagtgatc	CRISPR spacer
agccgagcgctttggcgtgaccgttcaaacca	Protospacer
 ********.*********** *** . . .

303. spacer 3.23|3391589|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MN693993 (Marine virus AFVG_250M418, complete genome) position: , mismatch: 10, identity: 0.688

ggcgcgctcctgctggctgtggtggcgttcct	CRISPR spacer
gagatcaaactgatggctatggtggcgttcct	Protospacer
*. ..    *** *****.*************

304. spacer 3.1|3390248|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.656

ggcatcgccccggcggccaccgacaccaccag	CRISPR spacer
cagggttccctgacggccaccgacaccacctt	Protospacer
 . . . ***.*.*****************

305. spacer 3.8|3390675|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 11, identity: 0.656

ttggacagcacctcgggatcgttgggcagcgt	CRISPR spacer
ggctccagcaccttggcatcgttgggcacgac	Protospacer
     ********.** ***********  ..

306. spacer 3.8|3390675|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 11, identity: 0.656

ttggacagcacctcgggatcgttgggcagcgt	CRISPR spacer
ggctccagcaccttggcatcgttgggcacgac	Protospacer
     ********.** ***********  ..

307. spacer 3.10|3390797|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to MF668280 (Mycobacterium phage Phabba, complete genome) position: , mismatch: 11, identity: 0.656

ccgtcctggtcctcgaacacccccgcgccggg	CRISPR spacer
taaagtaagtcctcgaacacccacgggccgga	Protospacer
. .  . .************** ** *****.

308. spacer 3.27|3391833|32|NC_009952|PILER-CR,CRISPRCasFinder,CRT matches to NC_047707 (Uncultured phage_MedDCM-OCT-S38-C3 DNA, complete genome, group G9, isolate: uvMED-CGR-U-MedDCM-OCT-S38-C3) position: , mismatch: 11, identity: 0.656

tggaacacgtgcacgtcgataatcctgggccg	CRISPR spacer
accggtgcgagcacgtcgataatcctgcgctc	Protospacer
   ....** ***************** **.

309. spacer 3.33|3392199|32|NC_009952|CRISPRCasFinder,CRT matches to NZ_CP015739 (Shinella sp. HZN7 plasmid pShin-03, complete sequence) position: , mismatch: 11, identity: 0.656

ggcgcgagcgcttcctgcacatcgctgggtgg	CRISPR spacer
ctgccgagcgcttccggcacatcgatgccacc	Protospacer
    *********** ******** **

310. spacer 3.33|3392199|32|NC_009952|CRISPRCasFinder,CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

ggcgcgagcgcttcctgcacatcgctgggtgg	CRISPR spacer
ctgccgagcgcttcctgcacgtcgatgccgcc	Protospacer
    ****************.*** **

311. spacer 3.33|3392199|32|NC_009952|CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 11, identity: 0.656

ggcgcgagcgcttcctgcacatcgctgggtgg	CRISPR spacer
ctgccgagcgcttccggcacatcgatgccgcc	Protospacer
    *********** ******** **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2280140 : 2303217

Roseobacter_phage(25.0%)

capsid,tRNA,head,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012178819.1\|2280140_2281394_+\|tRNA	tyrosine--tRNA ligase	A0A1S6UA79	Serratia_phage	1.5e-59	36.4
WP_044028715.1\|2281594_2282560_-	DUF3179 domain-containing protein	NA	NA	NA	NA
WP_012178821.1\|2282788_2283337_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	7.4e-40	56.9
WP_044027783.1\|2283329_2283836_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	9.6e-42	56.2
WP_012178823.1\|2284017_2285199_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_012178824.1\|2285293_2286178_+	fructose bisphosphate aldolase	A0A0K0KVJ8	Prochlorococcus_phage	6.7e-06	26.2
WP_012178825.1\|2286452_2286755_+	septum formation initiator family protein	NA	NA	NA	NA
WP_012178826.1\|2286854_2287850_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_012178827.1\|2287862_2289218_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA
WP_012178828.1\|2289231_2290494_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
WP_012178829.1\|2290508_2291318_-	serine O-acetyltransferase	NA	NA	NA	NA
WP_012178830.1\|2291685_2292393_-	DUF2793 domain-containing protein	A0A0K1Y6G9	Rhodobacter_phage	1.0e-12	48.2
WP_012178831.1\|2292385_2296303_-	hypothetical protein	F4YXU5	Roseobacter_phage	5.8e-219	37.0
WP_012178832.1\|2296306_2296747_-	peptidase	F4YXU4	Roseobacter_phage	4.3e-30	46.8
WP_012178833.1\|2296743_2297634_-	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	3.4e-58	40.0
WP_012178834.1\|2297630_2298263_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	1.5e-55	48.1
WP_012178835.1\|2298276_2298945_-\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	2.1e-12	34.5
WP_012178836.1\|2298928_2299144_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_012178837.1\|2299140_2299470_-	gene transfer agent family protein	NA	NA	NA	NA
WP_012178838.1\|2299475_2299889_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_012178839.1\|2299910_2300321_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_012178840.1\|2300317_2300656_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_012178841.1\|2300652_2301243_-	hypothetical protein	NA	NA	NA	NA
WP_012178842.1\|2301397_2302615_-\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	7.1e-67	38.5
WP_157865408.1\|2302611_2303217_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	5.7e-33	50.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage