CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009901	Shewanella pealeana ATCC 700345, complete sequence	6 crisprs	cas3,csa3,WYL,DEDDh,DinG	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009901_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009901_1

313652-313745

Orphan

Consensus_repeat	Method
CAAAGGTAGAGAACCAAAGGTAAAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009901_1

>merge|NC_009901|1|313652-313745|CRISPRCasFinder
CAAAGGTAGAGAACCAAAGGTAAAGCAGTAAAACGCTTGGGGCGCTCAAACAAGTGCCCTAAACACCAAAGGTAAAGAACCAAAGGTAAAGCAG

>NC_009901|1|1|313652-313745|CRISPRCasFinder
CAAAGGTAGAGAACCAAAGGTAAAGCAG	TAAAACGCTTGGGGCGCTCAAACAAGTGCCCTAAACAC
CAAAGGTAAAGAACCAAAGGTAAAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009901.1\|WP_012153539.1\|303076_303916_+\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|178061
NC_009901.1\|WP_012153542.1\|305321_306017_-\|HupE/UreJ-family-protein	unknown	unknown	gnl\|CDD\|379373
NC_009901.1\|WP_083766699.1\|306152_306611_-\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012153555.1\|320107_322765_-\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NC_009901.1\|WP_012153554.1\|319052_319958_-\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_041410765.1\|310707_311106_+\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226311
NC_009901.1\|WP_150102262.1\|324685_325633_-\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012153552.1\|316109_316676_-\|lipid-binding-SYLF-domain-containing-protein	unknown	unknown	gnl\|CDD\|211400
NC_009901.1\|WP_012153551.1\|315350_315935_+\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_041410766.1\|313851_314193_+\|DUF1232-domain-containing-protein	unknown	unknown	gnl\|CDD\|225876
NC_009901.1\|WP_012153550.1\|314231_315161_-\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	unknown	unknown	gnl\|CDD\|274031
NC_009901.1\|WP_012153540.1\|304144_304471_+\|multidrug-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987
NC_009901.1\|WP_012153544.1\|306835_307255_+\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_083766700.1\|322930_323368_+\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012153538.1\|301817_302948_+\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NC_009901.1\|WP_041410764.1\|307432_309079_-\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|225387
NC_009901.1\|WP_012153546.1\|309272_310493_-\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|377697
NC_009901.1\|WP_012153541.1\|304613_305261_-\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012153553.1\|316834_318895_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224423
NC_009901.1\|WP_012153557.1\|323370_324408_+\|porin	unknown	unknown	gnl\|CDD\|379292

Protein	Function_ID	Function_description	E-value
NC_009901.1\|WP_012153539.1\|303076_303916_+\|S-formylglutathione-hydrolase	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	2.21866e-143
NC_009901.1\|WP_012153542.1\|305321_306017_-\|HupE/UreJ-family-protein	gnl\|CDD\|379373	pfam13795, HupE_UreJ_2, HupE / UreJ protein. These proteins contain many conserved histidines that may be involved in nickel binding.	1.05645e-63
NC_009901.1\|WP_012153540.1\|304144_304471_+\|multidrug-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	2.51587e-23
NC_009901.1\|WP_012153555.1\|320107_322765_-\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	9.06408e-90
NC_009901.1\|WP_041410765.1\|310707_311106_+\|MAPEG-family-protein	gnl\|CDD\|226311	COG3788, COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only].	3.05316e-20
NC_009901.1\|WP_012153552.1\|316109_316676_-\|lipid-binding-SYLF-domain-containing-protein	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	9.90325e-30
NC_009901.1\|WP_041410766.1\|313851_314193_+\|DUF1232-domain-containing-protein	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	7.18525e-18
NC_009901.1\|WP_012153550.1\|314231_315161_-\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	gnl\|CDD\|274031	TIGR02207, DDG_protein., lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	4.95269e-160
NC_009901.1\|WP_012153538.1\|301817_302948_+\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NC_009901.1\|WP_041410764.1\|307432_309079_-\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|225387	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion].	6.18123e-08
NC_009901.1\|WP_012153546.1\|309272_310493_-\|threonine/serine-exporter-family-protein	gnl\|CDD\|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	1.00207e-62
NC_009901.1\|WP_012153553.1\|316834_318895_-\|S9-family-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.04987e-77
NC_009901.1\|WP_012153557.1\|323370_324408_+\|porin	gnl\|CDD\|379292	pfam13609, Porin_4, Gram-negative porin.	9.9415e-05

>NC_009901.1|WP_041410765.1|310707_311106_+|MAPEG-family-protein
MSLAISGLYISLTALLIVALTYRVIKLRRTHKIGIGSAGNESLALAQRVHANLLENAPIALLLLLVAETNGANNLLLHLFGSIWLVARLMHAVGLTQGKGGYHIGRFWGMLLTWAVIIGLALINLFSFIIAL
>NC_009901.1|WP_012153546.1|309272_310493_-|threonine/serine-exporter-family-protein
MDNQEFLEKRRFIIRLGKALHKFGTPAYRLEAHLQGVSNVLGIEGYFLISPTAMTFVLQHEEDQEYNHVARVKPGELDLGSLARTDELVEELMSGQRTLSEALERLEEIANKPNPYGTKLTLMAFGTSAGAFAMLMGTSWNDVFWSGILGLMVYGLVYRAERSKRMAEMLEPLAAILCAIAAYAIAQFDPSVNIPVVILSGIIIFIPGLALTLGLAELAARDLISGTARVMDAFMLLFKLYFGVILGMAIGKTLFGEVTYQPPESLPQWGIWAAVPILSTALVIIFKARLKDSPWGIMAGIVAFFSAMLGGLYFGESIGIFFGALAVGVYSNLFARWMKAPASIALLQGIVILVPGSKTYIGLNTLILGETIFNQSHLGIQIFLIFMSIVAGLIFANVAVPPRRTL
>NC_009901.1|WP_041410764.1|307432_309079_-|BamA/TamA-family-outer-membrane-protein
MERVCGLALSIFFSIQAGAASAEKKITAVENKAADDYQQKKQTKNIVIKSNDIFDLSDPETFFIHRWANYLHINTRDLVIRDKLSFSEGDKVSLKNLEEAQRLLRAQAYLRDARVTFSQPAADADLADEGENILVETWDNWSLLPTFSASHSGGESKFSFGLKEDNLLGYGIRTRIKYQSNVDRTGYLFAVEAPVNVIKHATIAASFYDNSDGQAKHVYFEKPFYSLDGTHSYSAEYLDDLRIDTLKQNGQDISEFEHIESYNNAHLGWLVERDSKQLSRVITGITQDRHEFAHVDSYPMSALPQDRDFLYPWIAYQYLQDDFKVLNNVHLIKNNEDFNLGWQHYFKLGIETRDISDNSPIGYHIDLISSRGYQGDGQLVLLGMDAKGVFATSQKDFYQVNLAAEYFYHITQKWTAYSKLRVSTSQNNYLDEPFALGDETGVRGYPNDYQYGDHQWAFTAELRHYPNINLYQLAELGWAIFTDVGHAFGGPDENNAVSSPIGSFGIGARIYSSKSSYGNVAHIDLSVPYTSGPEVNSWEWRFQVKSHF
>NC_009901.1|WP_012153544.1|306835_307255_+|hypothetical-protein
MRTLPILLLILSIALSGCASSEASKERAAMYTFTELEQVNSIGNFRMDGWESVDKYSVIVNSRPRQSYLLILSGGLNDLKFAQGLLVTSTLGKVEVGFDTVSTVQDPMMKAQIKRIYKLENKQQKNDIKAKIEAFADSK
>NC_009901.1|WP_083766699.1|306152_306611_-|hypothetical-protein
MFRFEVQPKQHSKSTLAIMLMLFVCQFFAVSSAYSVQYPNGEHPLGQSIYHHHSHEVVETFRHHSHAANAFNATESITPYLAVDSAVDGDNTFNTEPNQLTEHDHANHGHTPSDIPVETVFSSQFIHIKTISDNDIRYVGHRYAPPIPPPHT
>NC_009901.1|WP_012153542.1|305321_306017_-|HupE/UreJ-family-protein
MSQSLGTAIKFMVMLCGLFASFSLFAHGVDEDTKQFLTLNQGVSILPFIYIGAKHMVTGYDHLLFLVGVVFFLYRTKDVLLYVSLFTIGHSITLLVGVYYDIQVNAYLIDAIIGFSIIYKGFDNLGGFQRVFGFQPNTKVAVMIFGLFHGFGLATKIQEFQLPQDGLVPNILAFNVGVEIGQFLALGLVLILMSIWRRHKSYLQFSTVTSTLLMSAGVMLVGFQLTGYFIS
>NC_009901.1|WP_012153541.1|304613_305261_-|hypothetical-protein
MKNINNQTNIDNPNTIPVHSNATLLKASMCAVLIGAIVLVIAILPAEYNIDPTGIGKAVGLTKIAEAAQTDASPLPLVSPKKTTSSASNTLEIAPAPTVNEIKQARAQEPGMRQDKVNIVIAAGKGLEYKFLLNQGKHLEYDWSTDGGELFFDFHGEPQGDSTGFYESFAMTTASKMKGTLTTPFAGSHGWYWKNKTNLPITVTLSTKGAYLIKG
>NC_009901.1|WP_012153540.1|304144_304471_+|multidrug-efflux-SMR-transporter
MSWIFLLLGVVAEVLSHVALKATDGFSKPLPAALVILGHLTAFIFLGQAMKGMPVGVVHALWAGLAIVSVTLISALFYREHLDMTAWIGMVLVAAGVMMINFSQGHAH
>NC_009901.1|WP_012153539.1|303076_303916_+|S-formylglutathione-hydrolase
MTVENISVNKSFGGWHKQYSHQSKTLNCAMRFAIYLPPQASNGKKVPVLYWLSGLTCTDENFMQKAGAQRMAAELGIAIVAPDTSPRGDDVADDTGYDLGKGAGFYVNATQAPWNRHYRMYDYVVNELPQLIESMFPVSDKRSIAGHSMGGHGALVIAMRNPQAYQSVSAFSPITNPVNCPWGKKAFTAYLGRDTTTWVDYDASLLMRQATEFVPALVDQGEADDFLIEQLKPEVLEAAAKMSGYPLTLNMQEGFDHSYYFISSFIENHLRFHAEHLVK
>NC_009901.1|WP_012153538.1|301817_302948_+|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MTAQTIKSKAAVAWAVGQPLSMEIVDVMPPQKGEVRVKMIATGVCHTDAFTLSGDDPEGIFPCILGHEGGGIVESIGEGVTSVKVGDHVIPLYTPECGECKFCKSGKTNLCQKIRETQGKGLMPDGTTRFSKDGVEIYHYMGTSTFSEYTVLPEISLAKVNPEAPLEEVCLLGCGVTTGMGAVMNTAKVEEGATVAIFGMGGIGLSAVIGAAMAKASRIIAIDINESKFDLARKLGATDCINPKDYDKPIQDVIVELTDGGVDYSFECIGNVHVMRSALECCHKGWGESVVIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSELPEYVERYLAGEFKLSDFITHTMALEQVNEAFDLMHEGKSIRTVIHFDK
>NC_009901.1|WP_041410766.1|313851_314193_+|DUF1232-domain-containing-protein
MTQETNDSIEYSDESFWQKVKLFAKKAGREVIDNALCLYYAAKRPDTPKWAKTVIFGALAYFISPIDAIPDLTPIMGFSDDLGALAAALAMVSMYVDDNVKNQAAEKTAAWFD
>NC_009901.1|WP_012153550.1|314231_315161_-|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase
MSKYTVPTFSLAMLHPKYWCVLLIISISYLCSLLPYAIQIRLGKLVGRVVLSFMKRRTRTIKRNLELCFPDMTDAEREKLTKQNIENTGLALFETGMAWFWSNARIAKHTSVVGIEHIEKLKTEGRGALLIAVHSLNLELSGRAFGQYAQGMAVYRPNNNPCFDYFQLKGRSQGGHTLIHRKNVKFMLEALNNGAFMWYAPDHDYGRRRSTFAPLFAVENACTTTGTSLLADNTNCAIVPVVFVRDNDSGHYTLTIKEPMIDKFPKGDEHAGACFINKIVEEAIMAKPSQYMWLHRRFKNRPDGESSLY
>NC_009901.1|WP_012153551.1|315350_315935_+|hypothetical-protein
MKTIKYSQIALLAATSFALPAMAVTSEQSAFFDNLAAHCGKAFEGTVTAGNSADSAFSGKKLIMHVRECSDTVLKVPFHVGDDHSRTWVITKTQYGLHLAHDHRHKDGCEDKVTMYGGMTADMGSATEQSFPVDAYSINNFRENGLDVSVTNVWHMYVKPQEFTYRLTRENRDFRVDFDLTKPVDLPPVPWGHK
>NC_009901.1|WP_012153552.1|316109_316676_-|lipid-binding-SYLF-domain-containing-protein
MSRFIKRITTSLCLLASVMLAPQALAEDGYSQAKSTFQQANETQKFFNNAYGYALFPTVGKGGIGIGAAYGKGRVYRGGSYTGDTSLTQISFGFQLGGQAYSEIIFFKDEAAYKDFTSGSFEFGAQASAVAITIGANAQAGTTGNSAGAGKGAAKAAYINGMTVFTVAKGGLMFEAALAGQSFTFEEK
>NC_009901.1|WP_012153553.1|316834_318895_-|S9-family-peptidase
MKQAHKLSLLAAALIGSSFSAMAADRTHDITIDDFFDIGNMGSVTLSPNGKHAVWLESRWDKELDKSQRDLWLLDTKSRQSKRMTFTNESESSPQWSPDGEYVYYLGKIKQEGAKAPFNGKTQVFRLSVSSGDSQPMTKEAEGVAGFELSHDGKSLYFLATKTTTDTDQWASMRTSHSAPKYGHGEQKTNPLYQLDLEHFKQKLLLDDDKVVWEFKVSQDGSKIARITTTDNELVFLEGWSYVEIFDTKTKQNSVLADTQWRDNAPSAYGWLLGLAWQENNTELAFRIDFDGHPGQLFIANAKSTDKPSLEVSRPGDVTLTASDLTWRPNSDELCYRGADYGRVKLFCTEIDDGEQGDTRAVIPGDMVIGSYSFSQNGKSVAFSHNGLDHFSDLFIADANSSRAKAKRLTNINPQVDSWKLPQVSIVKWTAPDGAVVEGILDLPAGYKKEDGPLPLIVQIHGGPTSATPYALQHRSYGRSTFTANGWALLSPNYRGSTGYGDKFLTDLVGREHDIEVKDIMAGVDQLIADGIVDGDKMAVMGWSNGGYLTNALISTNNRFKAASSGAGVFDQRLQWMLEDTPGHVVNFMEGLPWEKPEAYDHGSSLTYANKIKTPTLIHIGEGDQRVPVGHAQGLYRALHHYLNVPVELVVYPGEGHGLSKYQHRKAKMEWDQQWFNHYVLGQAVE
>NC_009901.1|WP_012153554.1|319052_319958_-|hypothetical-protein
MNEFSEFFSESYWWLSLLGGIHCLGLGLYIRYIYSEKNGNHKILANIFSLMALYFFTGLLTSNNAPAPIHLVFTLIIPVYFLVMPLLYLYCDRSLNDIEQAIGFSRHFYPALFIAVLVIIAIVYRLLFDNHGTGIGLSQPTEATDLSLLAMLLPALLFIQTGLYFYYIIKMLSRYPGRASRLHQDSLKDIKFRWLLVLTLALMSNWLIRAVLIILPFYLGDQAIMVNQATTRLTMLLTVYILAIYGLNQITRAAYLRGKLAQQQPQRKPMPASQQLLSSEEIAYLHQLMQEEKQNKDLNRP
>NC_009901.1|WP_012153555.1|320107_322765_-|response-regulator
MSLLNNISIKIRMLALVLLPLIFASVLSGLAVKKQSQNVEALNTLNSKVSVLESLAQLNSLINQAREQLFKQDLKVDPASFTSTLNQIEQQLPLAFTSRNTEEMMSWLDSINSALTEMSDIDAAGLADWSAWINELQIQALTTLEKDPSGVTEEINQQLAILYQLQWLSLWSTEEKWLINQLLLNRNDPELLSQLVTVTERQQLYVERFIDINAKQEQITLLLNTFSDKAFEQSYQLRSHILNEEALSDSPNISLSAFSQRLDLIQYVVTTFSTQLADNIQSEIAQSKQLIMLFFGALLGSLIIIATIGANLYRRIINYLSHVIKTMSQIEETHDYSKKINESGGDELSLFSNKLNNLINERHLNDKKILRAKLEAEKANQAKSSFLANMSHEIRTPLNGIIGMSDIMADTKLTAIQNEYLQTIETSSQTLLLLINDILDLSKIESGNLSIINTDTDISEVVYDTLTMILAKVTEKSLTLAVEIDSDTPYLISLDEHRMRQVLMNLLSNAVKFTHEGGIRVVVSSKNTADYCDMIISIYDSGIGIAKEKQQYIFSPFTQEDDTTTREFGGTGLGLAICKQLVELMGGEISINSVKGQGCCFSIKLRSQIIAKEKPKSTQFEGLTAALISNNSDLSERLRRECQQHGFNLNFHYQSCFDLLQDKQTFDLLFVDSFSSTRGAIASLPEQLKQKDIFTIAINTPTEKRVLDHMDASVTLPLLGNRFKNALHNGLESRNLRRKQDSKNVINTDKPAEELEKVNIVILIVEDNLVNQKVASLLVKQAGFDFIIANNGQEAYDFISAGEAFHAILMDCMMPVMDGFTATEKIREWESQNSQQRLPIIALTASVLDQDIEKCYQSGMDDYLAKPFKKEALLHKLNSVSKLAS
>NC_009901.1|WP_083766700.1|322930_323368_+|hypothetical-protein
MLLYISPSATAIEANSNDGEDVEFAIFSLNDDLPALSKSKARMLYRGKSKKMSGSLKIVLVDLPEASIHREDFYKMLLGKSVSQMNGYWAGLAFSGKGQPPEELDSDDIKQILKWLNENPNGIAYAPIEAVPEEVNILITVPQGE
>NC_009901.1|WP_012153557.1|323370_324408_+|porin
MLFRRVFFITLSSLLCTPAMASIELTENIRLGGFGSTSISQSDNRTPLFISREITDETCYDCDTTFGLQLDVGIAEGFGASGQVVKRTQDSWSDPELEWAYLFYEFDDFEVRAGRLRLPLFLASEYYYVGQAYPWIRPPQEVYDSILGFTFYDGLSLSWDYEISDELQLTVSPYYGFDRLNKVELGEFLLQFDTEYMAGIYVDLTGFNYRIHSGFMQAKYAQRPFNTTQKLDIYTLGAEYSYESWQFMAETEIDRLQANWYASVIYAFDDLSPYITYAESHQLRKSKGVTAGVRYDVTSSISLNAEYQMIFSQEEGNRAQFVTSPLVYGESADVDLMTLSVSFVF
>NC_009901.1|WP_150102262.1|324685_325633_-|hypothetical-protein
MMTFKCLATDHQTQMAKHAPKPVLSPEISSDESSSKTTKETESDLIWKGISSSFALSLEQWDQDTPWYKRWSASVNLGYPLVETPATLPANATTGPSNQNLTASLSVKHSIIGNWFISATAYHYFDSDLQQAWNPDFTYVFGYSDWRPYTFSLLYSNYGGNRFNPESEVKHTEFSQGTWSLGWKFPITKPFIDWLSFTDDGAMGCQLDYNYTPEYFDLPSVEYKNHHQTVSLGCKYSIVGNWYVNATAFYYFDSEQKQPWNPDFTYGFGYFDWHPGTITIQYNNYSGNRWNSADRGPETGRFKDGSISISYSFKF

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Crispr_ID: NC_009901_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009901_2

1389932-1390024

Orphan

Consensus_repeat	Method
TTTATTAGCACAGAAACCCTAAGTTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009901_2

>merge|NC_009901|2|1389932-1390024|CRISPRCasFinder
TTTATTAGCACAGAAACCCTAAGTTTGCAGTTTTTGACGAGGGAAATGTCATGATTAGTGAGTTCTTTATTAGCACAGAAACCCTAAGTTTGC

>NC_009901|2|2|1389932-1390024|CRISPRCasFinder
TTTATTAGCACAGAAACCCTAAGTTTGC	AGTTTTTGACGAGGGAAATGTCATGATTAGTGAGTTC
TTTATTAGCACAGAAACCCTAAGTTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009901.1\|WP_012154410.1\|1396441_1399552_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_009901.1\|WP_086024352.1\|1379728_1380505_-\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012154395.1\|1376317_1377142_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|182386
NC_009901.1\|WP_012154412.1\|1401103_1402186_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277368
NC_009901.1\|WP_012154396.1\|1377215_1377854_-\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NC_009901.1\|WP_012154403.1\|1386126_1387428_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NC_009901.1\|WP_012154406.1\|1390069_1393201_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_009901.1\|WP_041411308.1\|1382440_1383946_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|214515
NC_009901.1\|WP_012154415.1\|1405627_1406884_+\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NC_009901.1\|WP_012154404.1\|1387837_1388200_-\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_150102272.1\|1402274_1403366_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|376607
NC_009901.1\|WP_012154405.1\|1388658_1389813_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_009901.1\|WP_012154397.1\|1378188_1379205_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
NC_009901.1\|WP_012154401.1\|1384242_1384452_-\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_041410862.1\|1396087_1396276_-\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012154399.1\|1380743_1382351_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|214515
NC_009901.1\|WP_012154407.1\|1393695_1394844_-\|L-threonine-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NC_009901.1\|WP_012154411.1\|1399552_1400665_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_009901.1\|WP_012154409.1\|1395485_1395959_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NC_009901.1\|WP_012154414.1\|1403682_1405350_-\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992

Protein	Function_ID	Function_description	E-value
NC_009901.1\|WP_012154410.1\|1396441_1399552_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_009901.1\|WP_012154412.1\|1401103_1402186_-\|metallophosphoesterase	gnl\|CDD\|277368	cd07425, MPP_Shelphs, Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.32256e-73
NC_009901.1\|WP_012154396.1\|1377215_1377854_-\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	1.2932e-77
NC_009901.1\|WP_012154403.1\|1386126_1387428_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	4.50773e-124
NC_009901.1\|WP_012154406.1\|1390069_1393201_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_009901.1\|WP_041411308.1\|1382440_1383946_-\|alkaline-phosphatase	gnl\|CDD\|214515	smart00098, alkPPc, Alkaline phosphatase homologues.	1.10918e-140
NC_009901.1\|WP_012154415.1\|1405627_1406884_+\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NC_009901.1\|WP_012154399.1\|1380743_1382351_-\|alkaline-phosphatase	gnl\|CDD\|214515	smart00098, alkPPc, Alkaline phosphatase homologues.	1.33375e-140
NC_009901.1\|WP_150102272.1\|1402274_1403366_-\|acyltransferase-family-protein	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	1.70398e-22
NC_009901.1\|WP_012154397.1\|1378188_1379205_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	1.01856e-154
NC_009901.1\|WP_012154405.1\|1388658_1389813_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.55124e-65
NC_009901.1\|WP_012154395.1\|1376317_1377142_+\|mechanosensitive-ion-channel	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	2.08742e-84
NC_009901.1\|WP_012154407.1\|1393695_1394844_-\|L-threonine-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NC_009901.1\|WP_012154411.1\|1399552_1400665_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	9.11096e-82
NC_009901.1\|WP_012154409.1\|1395485_1395959_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.57915e-49
NC_009901.1\|WP_012154414.1\|1403682_1405350_-\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0

>NC_009901.1|WP_012154405.1|1388658_1389813_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MAGSSVSKTKLWMLVISALAISACGDAPAPQQAVIPSVIVNTAHKEMITPKSEFVGRTRASEDVVIKPQIQGQLLRRSYIEGDDIAAGDLLFEIDPSTYKAELAQHQAVLKQAVASRDVAVMNWERGRRLLPDGMISAQDMDELTSRKLTTAAGVVQAEAAVDAAELQLSYTKVYAPISGRISHSKVSIGDIITPQSEMANIVQLQPMWVNFQVAEKGLITAQQQFSQAKNIDMKIEDLVMRLRLPNGTMFDETGHIDFIGNRVDATTGTLAVRATFKNANSLMLPGLFVTLVVESPITENALLIPQASVQEDQQGRFVMVLNDQDEVQKRLVVLGDRFGVEWRVLSGLEDGDRIVVEGLQKIRPGMKVNPVEQEVVPFKEDDK
>NC_009901.1|WP_012154404.1|1387837_1388200_-|hypothetical-protein
MTAISHVYNYTVRCPHVKDPAHPTSWRNHVELNRSCEIALDRITKWHGHSGNRLFEHEGFVVRECEQEQAYFAMQNNRLKDDKHALVTFKVFMDNKTKDTSVQEIMEHVIDDYKSRLSKL
>NC_009901.1|WP_012154403.1|1386126_1387428_-|NAD(P)/FAD-dependent-oxidoreductase
MHEMPNIVIVGGGAGGMEIATKLGHQLGRKGKARVTLIDCAESHVWKPLLHEVATGALDIGIDAISYRGHAANHGYHFQQGAMTDLDREAKQVILAPINDDKGRELLPARRIDYDYLVIAIGSIANDFNITGVRDHCVFLDSTEQAMEIRTMLLNKFMRYASHHQLDDKIKIAVVGAGATGVEMSAEMHHAVEQLRGFGYKIDSSLLEITLIEADERILPKVEKEEISASVAKELTSIGVKVMTNTRINQVTEEGLHTSEGEFIQSDMVIWSTGVKAPDFLKEIGGLESNHINQVMVQQNMQTTRDPSIFAIGDCAACPQEDGSWVPPRGQSARQMALMTADNIKLLLAGKAASNNYVYKDLGALVNLSKFHTVGNLMSFIGGGVMVEGKIARFVYTSLYRRHLIELHGPIKGTLLMFAKGISRIVHPHLKLH
>NC_009901.1|WP_012154401.1|1384242_1384452_-|hypothetical-protein
MKQLTLAAALLCSLAATGCAELKDAGRQIGHTTKEVTTDIGHATRDTTRAIGHASRDAVNSVKEDLSED
>NC_009901.1|WP_041411308.1|1382440_1383946_-|alkaline-phosphatase
MIVNNIKKIAVIISSALATFAANAAVLPSSQTDSQWYQDSAKLVSEKTKQTSATTAKNVILFVGDGMGVSTLTAARIFEGQQQANNQGGEENFLSFELFPKTALVKTYNTNQQTPDSAGTMTAIATGVKSKAGVLSVSDTSLRANCLSSKGNELVTLVDLANAKGLSTGIVSTARITHATPAATYATSPERNWEADSNLPTEAVANECKDIAYQLVMRDEVDALTVALGGGRRNFIPSDMTDGEDKAGRREDGLDLTKSWTDNLSNSAYVWDKAGFDAVDVASTDHLLGLFNSSHMQYEADRLDDTAGEPSLTEMTTKSIELLNKNDQGYLLIVESGRIDHAHHAGNAYRAMMDTVELSNAVRAAVENTNPEETLIMVTADHSHVFTIAGYPKRGNPILGLVHGIDGSVTIAKDGKPYTTVGYTNGPGAVVGLRDDLSSVDTQDKEFMQQALVPMGSETHAGEDITLHATGAGSDLVQGVMEQNVIFHIINQAQSLGGTKY
>NC_009901.1|WP_012154399.1|1380743_1382351_-|alkaline-phosphatase
MNKKLLVLSITAMLGLAACGDDGDKGADGNDGQDWTAVNQWFVDGQSRVTKAQELSVNNEAGAAKNIILFVGDGMGVSTVTAARILEGQLKGQTGEENSLSFETLPYVGLAKTYNVDGQTPDSAGTMTAMVTGVKTDVGVISQAEGVTRGNCASTDGQNLVTSLELAAMAGLSTGVVSTARITHATPAAAYAHAPERNWESDADLPDEAITNGCSDIASQLLSFDYGAGLNVVMGGGRRAFIPNTVTDTEGKAGKRLDSRDLTSEWLTKYTNSAYVASRDEFLALDPATTDHALGLFNSSHMEYELDRTTDGVTGEPSLAEMTAKSIDILQKNDKGFVLIIEAGRIDHAHHAGNAARALHDTIALSEAVRVAMEKTSEKDTLLMVTADHSHVFTIAGYPTRGNPILGLVKGNGADGQPAVTNATDANGLPYTTVGYANGLGYANLETGGDERYGYAAAPGRFDLNYVDTQSAGFHQEALVPLGSETHAGEDVGIFASGPGAHLVQGTVEQNHLFHVMNHAGSLVEKAEAAQSTSN
>NC_009901.1|WP_086024352.1|1379728_1380505_-|hypothetical-protein
MTKAAFFTSLISLCATSLTAANATELSCNDIDANHLSATYKVHHASGQQSTMTLLRNKDQVIYQRSPVSFEMWNKQGEYVRYFPEQQRSISYRKGDLRSLNMHFDFEQLNHLVSTSLISKLTQSEQAIQPIAADRENQITALECLNANRYHGALHLSQVQLVWAEKIALPVTMDVTMDMQQANQKVSYQLTSLKALSNDDFTSLISGYRDMDFADVGDNESDPFIAKMIHQGFIQHGSSGFYDSQGNQLSGGDSGHQH
>NC_009901.1|WP_012154397.1|1378188_1379205_+|low-specificity-L-threonine-aldolase
MIDFRSDTVTKPTAAMRAAISQAEVGDDVYGDDPSVNYLEDMAAEMFGYDNALFTSSGTQANLLALMAHCERGDEYLCGQQAHNYKFEGGGAAVLGSIQPQPLTNQADGSILLSDIEAAIKPDDIHFARTRLLSLENTIGGKIVPQEYLASAQALAFERGLKIHLDGARVANAAVAQNIPMTEITQYFDSVSICLSKGLCAPVGSILLGDERLITKARRWRKVLGGGMRQAGILASAATLALTEQVERLAEDHDNAAYLAAELALIEGFEVDMSQVQTNMVFAAVSDKIDTKALALELKAKGILLSPGKTIRLVTHADISRADITFFISELKGLLSRG
>NC_009901.1|WP_012154396.1|1377215_1377854_-|trimeric-intracellular-cation-channel-family-protein
MLEVKVISFLWLIGILAEAMTGALAAGKKQMDLFGVVIIGCVTAIGGGTLRDILLGNYPLIWIENVHYLIAIAAASLLTVMIAPVMRHLSKLFLAIDAIGLAVFSIIGAQKTLLLGFSPEIAIVMGVVTGVFGGVIRDILCNQVPLIFKKELYALVALLTASAYVAMKFNGVPEWLNLSISLIFGFSFRMLAIRYKWSMPKFDYQYQSDNAH
>NC_009901.1|WP_012154395.1|1376317_1377142_+|mechanosensitive-ion-channel
MDNLQGLMEQAPELIVTYGMKVLFAIIIFVIGKFLSNVAKNLTSKLLKKRKVDNTVVSFVANMAWALVFVFTIVATLGQIGVQTASLVAVIGAAGLAVGLALQGSLSNFAAGVLMVLFRPCRVGDYVEAAGVAGTVDEITIFSTRLLTPDNKVIIAPNSAMMNGTIVNYSAMDTRRLDLVIGVSYDANLAETKKVLTDILENSQYVLKDPAYTVAVAELADSSVNFVVRPWVKGSDYWPAHFEILEQIKVALDEAGIGIPYPQMDLYVKETPAA
>NC_009901.1|WP_012154406.1|1390069_1393201_+|efflux-RND-transporter-permease-subunit
MISEFFINRPKFAFVISTVLTLVGLISIPVLSVSEFPEIAPPQVSVSTSYSGASADIVKDTIAQPLEAEVNGVEGMLYMESKSANDGSYSLNVTFEVGTDADMAQVKVQNRVQQAMPRLPEEVKRQGVKVEKQSPNMLMVVNLVSPNETFDSLFITNYAGLNVKDALARQYGVSKVQVIGALDYAMRIWLDPDQMASLGVTATDVIGALQEQNIQVAAGRIGAAPVDPEQQFQYTLQTKGRLKDPQEFYDVMIRANNDGSKVVVGDVARVELGSQTYDAQGKLNNKPSAIISIYQSPDANALEVGKAIKAEMEKLSERFPNDLEYEVLYDTTEFVETSIKEVVQTLFISIALVVFVVFIFLQDVRSTLVPAIAIPVSLIGTFAFLLAFGMSINTVSLFALILAIGIVVDDAIVVVENVTRLMQDEGLSPKEATSKAMKEVTGPIIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICISVLISSINALTLSPALCASVLRAPKLHEKGFHAAFNKHFERVTGKYMKLVSSLTRKLVLVGIVYGCLILLTGGIAKILPSGFVPMEDKKAFMVDIQLPDGASLNRTEDVMRDLVELTLAEPGVENVIHASGFSILTGSVSSNGGLMIVTLSTWDERESADMMESAIVAKLQAKYAANPAVKAMAFSLPPIPGVGSVGGFEFVLQDTQGRTPQELASVMRALIMKANEQPEIAMAFSNFRADVPQMFVDVDRDKAKALGVSLNEIFATMQTMLGSMYVNDFNRFGKVFRVILQAETEYRNSDKDISRFYVRSKTGEMVPLSTLVTVTPILGPDVMNNYNMFSSTTINGFPAAGFSSGDAITAMERAANESLPSGYTYEWTGQTYQEIKAGNLAPLIFGLALVFTYLFLVAQYESWTIPFAVILAVPIAVLGAFLNILLVGSDLNLYAQIGLVLLIGLACKNAILIVEFAKQLREEGKSILEAGETAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGSRRALGYSVFGGMLAATVVGTLLVPVFYVIMQKMREKAKGLPQDEEAAN
>NC_009901.1|WP_012154407.1|1393695_1394844_-|L-threonine-dehydrogenase
MAAKFFIPSVNILGQDAVTEAIGDIKSLGFKNALIVTDKPLVEIGLVAQVTDKLASNDIRSVVFDGVQPNPTVGNVEAGLEILNANNCDFVISLGGGSPHDCAKGIALVATNGGSIKDYEGLDVSIKPQLPLVAINTTAGTASEMTRFCIITDEARHIKMAIVDKNTTPILSVNDPELMLLKPAGLTAATGMDALTHAIEAYVSIAANPITDACAIKAIELIQGNLVEAVENGQSIEARDQMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYDLPHGVCNALLLPHVQAYNAQVVPGRLKDVAKAMGVDVAAMTDEQGAEAAITAIKALSVAVNIPENLTKLGVKAEDIPTLANNALKDACGFTNPKQATHEEICQIFTNAL
>NC_009901.1|WP_012154409.1|1395485_1395959_-|NYN-domain-containing-protein
MKRIALFVDVQNIYYTCRQAYGKQFNYRKLWQHLGYEGDVSQATAYAIHRGDDGQLKFQDALKHIGFEVKLKPFIQRSDGSAKGDWDVGITIDIMEAASEVDCVILLSGDGDFDLLMQRIHQKYGVETQVYGVPTLTAKSLIDSVNQFHEIDASLLL
>NC_009901.1|WP_041410862.1|1396087_1396276_-|hypothetical-protein
MQKPQPKTLEPMLYETFNINGQYITERRTSLDRRVNEQTGYLDLYERRQTNQRRMPSVDIYI
>NC_009901.1|WP_012154410.1|1396441_1399552_-|efflux-RND-transporter-permease-subunit
MWLSDVSVKRPVVAIVLSLLLCVFGAVSFTKLAVREMPDVESPVVTVMTTYEGASATIMESQITTALESELTGISGVDQIESVTRNGMSRITVTFLLGWDLTEGVSDVRDAVARAQRRLPDEAKDPIVSKDNGSGEPAVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSVDISGGLYKVMYVQLNPELMAGRNITASDIVSVLNRENVETPGGEVRNDTTVMAVRTARLYQTPDDFNYLVLRTAADGSQVYLKDVANVFIGAENENSTFKSDGVVNISLGIVPQSDANPLEVAQDVHKEVDQIQKFLPEGTKLIVDYDSTVFIDRSIDEVFSTLAVTALLVILVLYIFIGQARATLIPAVTVPVSLISAFIAANVFGYSINLLTLMALILSIGLVVDDAIVVVENIFHHIEKGEPPILAAYNGTREVGFAVMATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALTLTPVLGSKILKANVKPNRFNVWVESIFTRLENFYRKMVTKAVTLRLAAPLVIIACILGSGWLMQQVPAQLAPQEDRGVIFAFIKGAEGTSYNRMAANMEIVEDKLMPLLGQGVVKSFSIQAPAFGGRAGDQTGFVIIQLEDWNERTVNAQQALGIVAKALKGIPDVMVRPLLPGFRGGSSEPVQFVLGGSDYQELFKWAQMLEEEALYSPILDSPEIDYKETSPELVVTVDKERAAQLGISVAEVSETLEIMLGGRSETTFVERGEEYDVYLRGDENSFNNVADLSQIYMRSAKGELITLDTITHIEEVASALKLSHNNKQKSITLKANLAEGYTLGEALDFLDQKAIEMLPSDISVAYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGVFGGFLGLYLTGQGLNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGLEIEQAIIDASVRRLRPILMTAFTTLIGAIPLILSTGAGAESRISVGTVVFFGMAFATFVTLLVIPAMYRLISAATKSPGFVESQLNQAIADQQNLAAKQ
>NC_009901.1|WP_012154411.1|1399552_1400665_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MRSSYFLLPLALIIAGAFTFSSLSEAKRADSKDRPVRTVPVVTGIVEQHDLTQSLSLIGKLDAEQSVFISPQIAGKIKSIQVSTEQEIAQGQILIQLDDAKAQAALAESAAYLADEKRKLKEFLKLIDQNAITKTEIDAQKASVDMATARLAAAQADLDYHYLSAPFSGTAGLIDFSQGKMVSAGTELLTLDDLSSMRLDLQIPENYLSQLSVGMSVTASSRAWPQKQFIGKVIAIDSRVNQDTLNLRVRVQFDNPSHRLKPGMMMSATLMFPSVAEPVIPVQALEYSGTNRFVYVVGKDGIAKRTKVTLGARIEDQVLISNGLTIGDKVVVQGLVNMRDGLRVDDLGGSALAQKDADKKADEQQARGNI
>NC_009901.1|WP_012154412.1|1401103_1402186_-|metallophosphoesterase
MFKALLYAAVLTGLSSQLSANEASNYSFDGPYVIQDKSAVESSPQQTAYWICNSKLTSSQVSEHSLKRPENCGNLPEPILTDDVKQVMPDSYTEVKKVVALSDVHGQFDVLLTLLKNQDIINADNNWAFGDGHMVMTGDMFDRGDQINEVLWFMYQLDRQAKAAGGMVHLLMGNHEQMVLGGDLRYVHERYDLASKLLDRSNDALYGEDTEIGQWLRSKNTLVKVNDVLYMHGGISSEWLERQLTIAEANRLFRANIGRPKAELKKDELLSFLFYGNGPTWYRGYFSDAFSEAELDKILAYFDVKHITVGHTSQKQVLGLFDNKLIAIDSSIKLGEQGELLLIENNKLIRGLFNGEREAL
>NC_009901.1|WP_150102272.1|1402274_1403366_-|acyltransferase-family-protein
MQTAAAATTTQAQQKKSTGFLNSINHFRGIAIIFIVMAHCYRPAGWEIETFADKAWFNLMMNGTVFFVFISGFLFHHVFYHRWDYKKYMKSKTKFVFLPYLLLSLPWIVWHLTVGTDPMMHQALANITAPAQAASWYVITGRTLTAYWYIPMGMMLFALSPWVMYLIKKQQILYYAIPLLLIAIMVHRPISNLNAIQSLVYFLPVYLLGVWGSAHRDKLFPFIDKYWIPMFFVGVALALIQAEYFGAGVLNKAPFEMTVPDLMLPQKILLTLVILAILNKFEHISIAPLQKLAEVSFAIYFIHPWITTPWWMIYDSPDLLGLAGKGNIFTTLIVTLVVVAISYVIAVMIKKMLSKRSRYLIGW
>NC_009901.1|WP_012154414.1|1403682_1405350_-|energy-dependent-translational-throttle-protein-EttA
MAQFVYSMLRVGKIVPPKKQILKDISLSFFPGAKIGVLGLNGSGKSTLLRIMAGLDTEIEGEARPMQDLKIGYLPQEPKLDPNQTVREAVEEAVAEAKNALVRLDEVYALYAEPDADFDALAKEQGQLEAIIQSQDAHNLDVVLDRAANALRLPDWDEKIEVLSGGERRRVAICRLLLEKPDMLLLDEPTNHLDAESVAWLERFLQEYTGTVVAITHDRYFLDNAAGWILELDRGEGIPWEGNYSSWLEQKDARLTQESATQSARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTNDYQKRNETNELFIPPGPRLGDKVIEITNLTKSYGDRVLIDDLTFSVPKGAIVGIIGANGAGKSTLFKMISGAEQPDSGTVELGESVQIASVEQFRDSMNDKNTVWQEISDGQDIMRINNTEIPSRAYVGRFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAMVISHDRWFLDRIATHILDYRDEGKVNFYEGNYTEYSTWLKETMGTDVVEPHRLKYKRMVK
>NC_009901.1|WP_012154415.1|1405627_1406884_+|serine-hydroxymethyltransferase
MLKKDMNIADYDPQLFAAIEDETRRQEEHIELIASENYCSPRVIEAQGTQLTNKYAEGYPGKRYYGGCEHVDIVEELAISRAKELFGATYANVQPHSGSQANAAVFMALLQGGDTVLGMSLAHGGHLTHGSHVSFSGKLYNAVQYGIDETTGQIDYAEVERLAVEHKPKMIIAGFSAYSGIIDWGKFREIADKVGAYLFVDMAHVAGLVAAGIYPNPMPHAHVVTTTTHKTLAGPRGGLILSSINDEDIYKKLNSAVFPGGQGGPLMHVIAAKAVAFKEALDPEFTTYQEQVVVNAKAMARTFIERGYNVVSGGTDNHLFLLDLISKDITGKDADAALGNANITVNKNSVPNDPRSPFVTSGLRIGSPAITRRGFGEEESVQLTHWMCDVLDDISDLAVSERVKGQVLELCAKFPVYG

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Crispr_ID: NC_009901_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009901_3

1630285-1630390

Orphan

Consensus_repeat	Method
CTAGGAAAAGCACAAGAAAAGACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009901_3

>merge|NC_009901|3|1630285-1630390|CRISPRCasFinder
CTAGGAAAAGCACAAGAAAAGACAAACGCTGCGCTGACGGTATAAGCTAAGAAGAGTCTAGGACGCTTCGCTTCTAGGACCTAGGAAAAGCACAAGAAAAGTCAAA

>NC_009901|3|3|1630285-1630390|CRISPRCasFinder
CTAGGAAAAGCACAAGAAAAGACAAA	CGCTGCGCTGACGGTATAAGCTAAGAAGAGTCTAGGACGCTTCGCTTCTAGGAC
CTAGGAAAAGCACAAGAAAAGTCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009901.1\|WP_012154591.1\|1632476_1633397_+\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|381151
NC_009901.1\|WP_150102274.1\|1621421_1622036_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_009901.1\|WP_012154582.1\|1623484_1624237_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_009901.1\|WP_012154585.1\|1627614_1628784_-\|flagella-assembly-protein-FlgT	unknown	unknown	gnl\|CDD\|379855
NC_009901.1\|WP_012154586.1\|1629091_1629721_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379995
NC_009901.1\|WP_012154593.1\|1634535_1634934_+\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183631
NC_009901.1\|WP_012154580.1\|1622098_1622674_-\|chalcone-isomerase-family-protein	unknown	unknown	gnl\|CDD\|374318
NC_009901.1\|WP_012154597.1\|1638294_1639038_+\|flagellar-basal-body-rod-protein-FlgF	unknown	unknown	gnl\|CDD\|183642
NC_009901.1\|WP_012154595.1\|1635378_1636191_+\|flagellar-hook-assembly-protein-FlgD	unknown	unknown	gnl\|CDD\|235847
NC_009901.1\|WP_012154594.1\|1634936_1635353_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|183636
NC_009901.1\|WP_012154587.1\|1629721_1630168_+\|LPP20-family-lipoprotein	unknown	unknown	gnl\|CDD\|225563
NC_009901.1\|WP_012154596.1\|1636276_1637638_+\|flagellar-hook-protein-FlgE	unknown	unknown	gnl\|CDD\|235557
NC_009901.1\|WP_012154583.1\|1624589_1625843_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NC_009901.1\|WP_012154589.1\|1631077_1631395_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NC_009901.1\|WP_012154588.1\|1630555_1630981_-\|flagellar-protein-FlgN	unknown	unknown	gnl\|CDD\|377465
NC_009901.1\|WP_012154592.1\|1633536_1634370_+\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NC_009901.1\|WP_012154590.1\|1631492_1632266_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|180794
NC_009901.1\|WP_012154581.1\|1622705_1623185_-\|DUF2947-domain-containing-protein	unknown	unknown	gnl\|CDD\|314165
NC_009901.1\|WP_012154584.1\|1625950_1626781_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NC_009901.1\|WP_012154578.1\|1620119_1621232_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776

Protein	Function_ID	Function_description	E-value
NC_009901.1\|WP_012154591.1\|1632476_1633397_+\|chemotaxis-protein-CheV	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.69288e-48
NC_009901.1\|WP_150102274.1\|1621421_1622036_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.01088e-19
NC_009901.1\|WP_012154582.1\|1623484_1624237_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.55034e-15
NC_009901.1\|WP_012154585.1\|1627614_1628784_-\|flagella-assembly-protein-FlgT	gnl\|CDD\|379855	pfam16539, FlgT_M, Flagellar assembly protein T, middle domain. FlgT_M is the middle region of a family of flagellar proteins that make up part of the basal body of the flagellum. The flagellum is a large macromolecular assembly composed of three major parts: the basal body, the hook, and the filament. The basal body has two unique ring structures, the T ring and the H ring. FlgT is required to form and stabilize both ring structures. FlgT-N and FlgT-M are thought to be involved in the H-ring and the T-ring formation, respectively. and FlgT-M is also required for the stable association of FlgT with the basal body.	1.52047e-43
NC_009901.1\|WP_012154586.1\|1629091_1629721_+\|hypothetical-protein	gnl\|CDD\|379995	pfam17680, FlgO, FlgO protein. This entry represents the FlgO protein. Mutation of this protein in Vibrio cholerae has been shown to reduce motility. FlgO is an outer membrane protein that localizes throughout the membrane and not at the flagellar pole. Although FlgO and FlgP do not specifically localize to the flagellum, they are required for flagellar stability. Proteins in this family mostly contain an N-terminal lipoprotein attachment motif.	6.94857e-42
NC_009901.1\|WP_012154593.1\|1634535_1634934_+\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183631	PRK12625, flgB, flagellar basal body rod protein FlgB; Provisional.	9.06409e-87
NC_009901.1\|WP_012154580.1\|1622098_1622674_-\|chalcone-isomerase-family-protein	gnl\|CDD\|374318	pfam16036, Chalcone_3, Chalcone isomerase-like. Chalcone_3 is a family of largely bacterial members.	5.5735e-83
NC_009901.1\|WP_012154597.1\|1638294_1639038_+\|flagellar-basal-body-rod-protein-FlgF	gnl\|CDD\|183642	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed.	6.08791e-152
NC_009901.1\|WP_012154595.1\|1635378_1636191_+\|flagellar-hook-assembly-protein-FlgD	gnl\|CDD\|235847	PRK06655, flgD, flagellar hook assembly protein FlgD.	2.21925e-84
NC_009901.1\|WP_012154594.1\|1634936_1635353_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|183636	PRK12631, flgC, flagellar basal body rod protein FlgC; Provisional.	9.49501e-83
NC_009901.1\|WP_012154587.1\|1629721_1630168_+\|LPP20-family-lipoprotein	gnl\|CDD\|225563	COG3018, COG3018, Uncharacterized protein conserved in bacteria [Function unknown].	3.52359e-17
NC_009901.1\|WP_012154596.1\|1636276_1637638_+\|flagellar-hook-protein-FlgE	gnl\|CDD\|235557	PRK05682, flgE, flagellar hook protein FlgE; Validated.	2.33916e-168
NC_009901.1\|WP_012154583.1\|1624589_1625843_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	3.36026e-79
NC_009901.1\|WP_012154589.1\|1631077_1631395_-\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	2.672e-17
NC_009901.1\|WP_012154588.1\|1630555_1630981_-\|flagellar-protein-FlgN	gnl\|CDD\|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	1.6088e-10
NC_009901.1\|WP_012154592.1\|1633536_1634370_+\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	4.99917e-99
NC_009901.1\|WP_012154590.1\|1631492_1632266_-\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|180794	PRK07018, flgA, flagellar basal body P-ring formation protein FlgA.	1.2461e-96
NC_009901.1\|WP_012154581.1\|1622705_1623185_-\|DUF2947-domain-containing-protein	gnl\|CDD\|314165	pfam11163, DUF2947, Protein of unknown function (DUF2947). This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.	1.6378e-85
NC_009901.1\|WP_012154584.1\|1625950_1626781_-\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	2.34454e-22
NC_009901.1\|WP_012154578.1\|1620119_1621232_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.07972e-47

>NC_009901.1|WP_012154587.1|1629721_1630168_+|LPP20-family-lipoprotein
MKAVILFAALALSACSAQDRYVQYETEAPSSFPKLTAIGYAPLDTQPATEQSQRVLMAMQASKIAAYRELAEQVYGQQLSATSQVRDWMLAADEIQASVSGVIRGAKVVKSYPAGEHYVTELELDFEQVWALYQQQNRSQRVKEITYF
>NC_009901.1|WP_012154586.1|1629091_1629721_+|hypothetical-protein
MYKLIIFLPMLFALGCASTEADNQAELQMANGHGLPHTEAINHLSQQMVNELVRQNDGLRPDQPLLVTTPVLLSDMKSTNALGLQFQQGLIASLHDHQFNLVDINVSDTLKVTQSGEFILTRDWQQLPVDVPIENVVVSTMSLSTQGVALNSRIVNISNNRVISAAQGFINASAMPGYISHSEKVVSQNGLLYRDAQAGQHTVQLVGDK
>NC_009901.1|WP_012154585.1|1627614_1628784_-|flagella-assembly-protein-FlgT
MKSAQYFTTALLCLASSGLTLPVQAKWISASGQATITDNNVNQARENAIHQAVSYATLQSGARFSSQQTVRNGQLVNDSFILEQQAQSQNVELVSELIEDGQITVNVRIDMMEPLNDTCQATQLKAAILIPQALIKDRTQLRYGNIGLFEQNLSERLASTLEQNASNSFPQTHANERLDIDQALVDVRGYRLPSWLSEITDSQYILLPEIIDISTEPFTTTLGLWDNDPMRNFHIRVSLFHGISGEKIWSQQYSQSAEWEFKRQQTVNSNSENFWSSEYGQAIDQVLAKVSHDIDSSLNCRPLLGQVVSRQANRIILNLGRRHGIRVGDTLQLVLQQNMPDRLDNMRAVVGKSKASITIDQVTEESATAVLDGIAASLNIQINDLAIKL
>NC_009901.1|WP_012154584.1|1625950_1626781_-|sterol-desaturase-family-protein
MIDEFYNIIGNVGTALQHLIFPMLFFFLFAYLLKRKQAVTAFRTCLPNSIFNISIMCFNLIFISLISSHLKWLYSIDIGENLSQIWASLPEWLVILSATFCGDFIGYWRHRFEHSRILWPSHAMHHSDTQMSWLTLQRFHPFNRMSTLIIDTGLLMCLGFPPYALVANNLIRHYYGYFIHADLPWNYGAWNKVFVSPVMHQWHHAAEPAAYNTNFATIFSIFDRAFGTYRVPGLCHIPLGVPYNVGGNILGQLLYPFKLSSYLKKSKAPQAKSIDT
>NC_009901.1|WP_012154583.1|1624589_1625843_+|dicarboxylate/amino-acid:cation-symporter
MWNKIRSSLPLQLIIAAGAAWLFATSLTSLAQPNVIADVDQQAWYQFLMLGKTVYIGLLKMVVGIMVMLSLIEGISNIGAITKLKTLGMRTLGFYTFTTTIAVSLGLGASLLLPVWQPLTQAVPLAEGATLIGEQAASGGAIATKLLNMALVNPVAAIVNGNLLAVVVFSIMFGIALLTALPEKHLLFEVIAGLNKGINAMIGGIIRLSPLAIFAIVFEFSLTGAEALFSQLALFALLVFVLTVIHGLVVLPGLAKLFTGIKITTLFKGISAPLAMAFATSSSAATLPLSMRSAEELGVSPATSSMVLPLGSVMNMDGTALFEGVAAIFLAQLFGVDLTTTGMVMIFIMAMVSSIGAPGMPSGSMSGMQLVLLAAGIPLEAIAILLIIERPLDTFRTAVNVEGDIIAALVVDKWQKG
>NC_009901.1|WP_012154582.1|1623484_1624237_+|class-I-SAM-dependent-methyltransferase
MLTTQTNALYTDLSGYYDLMCADINYQAQSDCIRRLHQLFGNRGVRHLDLACGTGPHVRYFIENGYQSSGLDINQPMLDIAKLRCPDAEFVCHDMANFTVDEPLDLITCFLYSIHYSDGIEKLKECISSVHAALSPGGMFCFNSVKKSRIDNSSVVSHSAVHEDSQFVFSSGWYYSGDGEKQALKLSIEKTTAGITQSWQDEHPMVAVGFAELQSLLQPYFDVHILEHDYDRLMPWDGVSGNAIFACVKI
>NC_009901.1|WP_012154581.1|1622705_1623185_-|DUF2947-domain-containing-protein
MAHTYIPFEQYKRKWIFNHKDLPVSDEDKALISPLDQKSSMEVWNKWISNKSSRTEQFTKGDWAAKDSAWVLTEHWQSAWDSEEAALPEGFSKHFDWADDAPVYFCYEKYQVIETRWDVFVRNWKCFLFFDDGPLLISPKQKQAAIFHQSGQFQLGSRG
>NC_009901.1|WP_012154580.1|1622098_1622674_-|chalcone-isomerase-family-protein
MKSLSTLLLATSVLATSVLVSSSLQAKEVSGVQLDDSVQLDGQTLILNGAGVRSKFFIDLYVGSLYVPTALDSAQAVIDAPSAAVRLNITSGMITADKMKDAITQGFDDATDGNTTPIAAKIEQFMGLFSAEIVEGDQFTLLADKATGVTAYKNGQAQATIAGEDFRQALLKIWLGEQPAQDSLKEAMLGE
>NC_009901.1|WP_150102274.1|1621421_1622036_+|TetR-family-transcriptional-regulator
MNSPVLSRSEQKRGQILQAAKELFCEHGFPNTSMDEVAKLAGVSKQTVYSHFGCKDDLFVASIESKCLVHGVNQEVFADPKAPEQSLMLFAKHFGEVITSPEAVTVFKACVSQADTHPEISELFYSAGPQHILGLLRDYLTRVSLLGNYQFTQPHDCAVRLCLMIFGEVRMRLDLGLDVSELLDGRERYINETVEMFLRAYKVC
>NC_009901.1|WP_012154578.1|1620119_1621232_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MNIKRVITRQKLLISLVAVTFLPGCQESPDEQTSAPSYQSVNAESLSLKQGYQFSQVFSGSVRAGNTTGIGFELAGKIKALGVDSGDKVKQGQLLAKLDTRLLMAEKNELTASLAQNKADLDLAKATLDRSLGLQKQGYVSEQQLDELKGQLSSLQAAKTRLNASLLANQLKIEKSDLLAPFDGVISKRSHNLGEVINVGSPVYTLIEHNNVQAYIGVPVEIAAQLKTGQTVAVTVRQRDYQASIAGIGAELDPVTRTVELRLTLPTNAKLINGELSYLNYNKVIDTQGYWVPLSALTDGVRGLWNIYIISPSDEQLFSIERRDVEIVYAAKDKAFIKGAISPDEQYVSQGLHKLVAGQLVTRQAKLATR
>NC_009901.1|WP_012154588.1|1630555_1630981_-|flagellar-protein-FlgN
MTNLSQLISSQHQVLTELKELISQEKQALHAQQADVLLSLASTKANLLASLKQNDEIIAQQPDLALLKTDPELSQQVANTKQLLAECQQLNAENESLIELSLASLNRFSQALQVSRNSSSLTYDGKGKTSSISTLGNNLKA
>NC_009901.1|WP_012154589.1|1631077_1631395_-|flagellar-biosynthesis-anti-sigma-factor-FlgM
MAIDIKQVNTHANTRIGMGMNAKGAPAQTAPSAPAQSAQKTDSVSITAQAQQIQNVQTKMADMPEIDQKKVDAIKAAIAEGRYKIDPEKLATNIASFENDLKDLS
>NC_009901.1|WP_012154590.1|1631492_1632266_-|flagellar-basal-body-P-ring-formation-protein-FlgA
MTAVQHIPKYTRILANQATAFIIKAFIGSFFIILVMPTLALAAEPASIPSISTISRLAIAAVEQKIEAPEKARINITPQSLDTRVNLPNCYLPIKAEIASDRAIRRNNTVRISCNSPDLSYPWQIFLSVRVDILYPIVVAKSTMGPGDLLARGDIEIEYIEQSNLRGQQFEEISQVVGARLKRRVAPGQPIFANQLCIVCKGDSVSIYARSENFEIKTVGEALHDGNVGDKIRIKNSHSHKKLDARVTGVGQVEVRM
>NC_009901.1|WP_012154591.1|1632476_1633397_+|chemotaxis-protein-CheV
MSTILESVNKRTQLVGQNRLELLLFKLNGRQRFGINVFKVKEVLQCPPLTTLPKLNSKVRGIAHVRGMTISVIDLSAATGGRPIEDVSNCFIIISEYNRSVQGFLVSSVERIINMNWEAIMPPPQGAGKYSYLTAVTEIDNELVEILDVEKILDEISPVNTETSKELNDALTLDTNQHYHIMVIDDSSVARKQIIRALTSLDLQIDTAKDGKEALEKLRAIAVGCEDVSTEIPLIISDIEMPEMDGYTLTAEIRDDPKLKNIKVVLHTSLSGVFNQAMVQKVGANDFIAKFNPDELAAAVNKHLSL
>NC_009901.1|WP_012154592.1|1633536_1634370_+|protein-glutamate-O-methyltransferase-CheR
MSNKSLAENEYKQFRLFLEQHSGIVLGENKLYLVRSRLAPLMGKYNLPSLSEVVKQSMKPTERQLRTEVIDAMTTNETLWFRDRYPFELLSNTILPTFSRLGRPVKIWSAACSSGQEPYSLAMTILEHQQRKPGSLPGNASILATDLSPSMLERCKGAEYDNLALGRGLSDERKRQFFDTLPSGNMVVKDNVKRLVNFRAHNLLESYTLLGKFDIIFCRNVLIYFSPEAKRKILRQFAAALNPNGILFLGASESIAGLSDEFDMIRCNPGIYYQKRV
>NC_009901.1|WP_012154593.1|1634535_1634934_+|flagellar-basal-body-rod-protein-FlgB
MAISFDKALGVHQHTLGVRSQRAEILSSNIANADTPGYKARDVDFSKAMNAAQSQQTGLAMAKSDSKHFDMAALTQQHLGYRVPNQPDTGDGNTVDIQQEQSAFMQNALEYQMSLGFLDSKFSGMKKAIRGD
>NC_009901.1|WP_012154594.1|1634936_1635353_+|flagellar-basal-body-rod-protein-FlgC
MSLFNIFNVAGSGMSAQSVRLNTTASNIANADSVSSSVGETYRARHPIFEAEMSKAQQHQSAAQSVAVKGIVESDLPLNKEFSPDHPMADTDGFIYKPNVNVMEEMANMISASRSYQMNVQVTEAAKSMLQQTLRIGK
>NC_009901.1|WP_012154595.1|1635378_1636191_+|flagellar-hook-assembly-protein-FlgD
MSLINPLTATQTAPSQTPQANAISPQTAATATQSSTASATNTEQTSTGNPFLDGLRLPEENPIPEPNSQELTQEDFFSLLSQQLSMQDPFKPVENDQMIQQMASFSTVDGISKLNEEIINLNALTSSSQALQASGLVGQKVLIPSDTAHISAEDPSMKGIISTPEPIESVIVRIEDEKGQLITTYNVDGSAGGNIDVSWDGLDKNGEPVAEGNYTFKASGKVGGTSEELPVSTYAHVTSVSLGTAATGAILNLRGVGGIKISDVLAVSET
>NC_009901.1|WP_012154596.1|1636276_1637638_+|flagellar-hook-protein-FlgE
MSFNIALSGISSAQKDLNTTANNIANVNTTGFKESRAEFADVYASSIFANSKTTVGGGVATSQVAQQFHQGSMQFTNNSLDMAINGGGFFVTSSEVGSQDHSFTRAGAFKFDSNNYIVDSAGNFLQTFPVDKDGNSTSVSLTTTKPVQIPDTAGSPVKTDQVGIQMNLNAGESTLDPAAFDPDDPETFNNSTSVTIYDSLGEPHILTSYFVRPPNAAHIGESNWVAFYAVDGKPVDLDPAAGEYDIDTDGDGAVDGQASAENAAGWKGAAVSFNDTGAYTGSNPAVITTEALGVGGANVLGPGADGSQTLTLDFNNPTQYASPFEVTELNQNGTTVGRLTNVEVGADGLINASYSNGSTVPLARVALVSFANEQGLSQAGNTSWKASLDSGPALAGEANSGTFGSIRSSALEQSNVDLTTELVDLISAQRNFQANSRTLEVNNTLQQTVLQIR
>NC_009901.1|WP_012154597.1|1638294_1639038_+|flagellar-basal-body-rod-protein-FlgF
MDKLLYVAMSGAKQNMNSLAVSANNLANANTDGFKSSLAQARSMQAFGEGLPTRVFSMTETPSANFASGPIKTTGRDLDIAVKGDGWIAVQAENGGEAYTRSGSLRFDNSGVLRNDKGTAVMGDNGPIVLPLPIEKVEISQDGIVSVRPSGATAEVIEEVARIKLVNPGNQNLMRGEDGLFRLMSGENAPADPSVGLLSGAVEGSNVNAVHEMVSMIDLQRQFEMQVKMMKTAEENDRASSSLMRIS

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Crispr_ID: NC_009901_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009901_4

4261648-4261796

Unclear

Consensus_repeat	Method
CACAGCGTAAGCCTAAGAGCCGCTGGTAACTAATGATATTGCCGCTGCAGTCTA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_009901_4

>merge|NC_009901|4|4261648-4261796|CRISPRCasFinder
CACAGCGTAAGCCTAAGAGCCGCTGGTAACTAATGATATTGCCGCTGCAGTCTACTGCTTAGCAACATTATTAGTTTAGCTATCTAAACAACAGTCACAGCGTAAGCCTAAGAGTCGCTGGTAACTAATGATATTGCCGCTGCAGTCTA

>NC_009901|4|4|4261648-4261796|CRISPRCasFinder
CACAGCGTAAGCCTAAGAGCCGCTGGTAACTAATGATATTGCCGCTGCAGTCTA	CTGCTTAGCAACATTATTAGTTTAGCTATCTAAACAACAGT
CACAGCGTAAGCCTAAGAGTCGCTGGTAACTAATGATATTGCCGCTGCAGTCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_009901.1\|WP_012156691.1\|4270022_4271762_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NC_009901.1\|WP_012156679.1\|4254060_4254474_+\|DUF2170-family-protein	unknown	unknown	gnl\|CDD\|378318
NC_009901.1\|WP_012156685.1\|4258964_4259645_+\|TIGR00153-family-protein	unknown	unknown	gnl\|CDD\|224310
NC_009901.1\|WP_012156682.1\|4255954_4256284_+\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012156696.1\|4276819_4278229_-\|ATP-dependent-RNA-helicase-DbpA	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236977
NC_009901.1\|WP_012156684.1\|4257244_4258732_-\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|143624
NC_009901.1\|WP_012156694.1\|4274482_4274683_-\|DUF3565-domain-containing-protein	unknown	unknown	gnl\|CDD\|378808
NC_009901.1\|WP_012156680.1\|4254486_4255176_+\|PspA/IM30-family-protein	unknown	unknown	gnl\|CDD\|281941
NC_009901.1\|WP_012156690.1\|4268075_4269956_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_009901.1\|WP_012156689.1\|4265878_4267759_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_009901.1\|WP_012156697.1\|4278570_4279266_-\|DUF3313-domain-containing-protein	unknown	unknown	gnl\|CDD\|378712
NC_009901.1\|WP_012156683.1\|4256342_4257140_+\|potassium-channel-family-protein	unknown	unknown	gnl\|CDD\|369572
NC_009901.1\|WP_012156677.1\|4251226_4252126_+\|DUF350-domain-containing-protein	unknown	unknown	gnl\|CDD\|377187
NC_009901.1\|WP_012156681.1\|4255187_4255838_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379368
NC_009901.1\|WP_012156686.1\|4259669_4260938_+\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NC_009901.1\|WP_041411082.1\|4271761_4273582_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NC_009901.1\|WP_012156678.1\|4252241_4253969_+\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|235139
NC_009901.1\|WP_012156688.1\|4262330_4265525_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	unknown	unknown	gnl\|CDD\|237017
NC_009901.1\|WP_012156695.1\|4275089_4276625_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NC_009901.1\|WP_012156693.1\|4273936_4274278_-\|DUF3622-domain-containing-protein	unknown	unknown	gnl\|CDD\|315050

Protein	Function_ID	Function_description	E-value
NC_009901.1\|WP_012156691.1\|4270022_4271762_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_009901.1\|WP_012156679.1\|4254060_4254474_+\|DUF2170-family-protein	gnl\|CDD\|378318	pfam09938, DUF2170, Uncharacterized protein conserved in bacteria (DUF2170). This domain, found in various hypothetical prokaryotic proteins, has no known function.	1.82216e-44
NC_009901.1\|WP_012156685.1\|4258964_4259645_+\|TIGR00153-family-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	3.82782e-66
NC_009901.1\|WP_012156696.1\|4276819_4278229_-\|ATP-dependent-RNA-helicase-DbpA	gnl\|CDD\|236977	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.	0
NC_009901.1\|WP_012156684.1\|4257244_4258732_-\|CYTH-domain-containing-protein	gnl\|CDD\|143624	cd07756, CYTH-like_Pase_CHAD, Uncharacterized subgroup of the CYTH-like superfamily having an associated CHAD domain. This subgroup belongs to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily. Members of this superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). A number of proteins in this subgroup also contain a C-terminal CHAD (Conserved Histidine Alpha-helical Domain) domain which may participate in metal chelation or act as a phosphor-acceptor. The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup have not been characterized.	4.24177e-66
NC_009901.1\|WP_012156694.1\|4274482_4274683_-\|DUF3565-domain-containing-protein	gnl\|CDD\|378808	pfam12088, DUF3565, Protein of unknown function (DUF3565). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.	3.41454e-28
NC_009901.1\|WP_012156680.1\|4254486_4255176_+\|PspA/IM30-family-protein	gnl\|CDD\|281941	pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homolog in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma(54) containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator.	4.62996e-23
NC_009901.1\|WP_012156690.1\|4268075_4269956_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.38006e-63
NC_009901.1\|WP_012156689.1\|4265878_4267759_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	9.58535e-69
NC_009901.1\|WP_012156697.1\|4278570_4279266_-\|DUF3313-domain-containing-protein	gnl\|CDD\|378712	pfam11769, DUF3313, Protein of unknown function (DUF3313). This a bacterial family of proteins which are annotated as putative lipoproteins.	4.46882e-33
NC_009901.1\|WP_012156683.1\|4256342_4257140_+\|potassium-channel-family-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	2.62582e-11
NC_009901.1\|WP_012156677.1\|4251226_4252126_+\|DUF350-domain-containing-protein	gnl\|CDD\|377187	pfam03994, DUF350, Domain of Unknown Function (DUF350). This domain occurs in a small set of of bacterial proteins. It has two transmembrane regions, and often occurs as tandem repeats. The are no conserved catalytic residues.	0.000159688
NC_009901.1\|WP_012156681.1\|4255187_4255838_+\|hypothetical-protein	gnl\|CDD\|379368	pfam13785, DUF4178, Domain of unknown function (DUF4178).	0.00345397
NC_009901.1\|WP_012156686.1\|4259669_4260938_+\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	5.3749e-54
NC_009901.1\|WP_041411082.1\|4271761_4273582_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_009901.1\|WP_012156678.1\|4252241_4253969_+\|polyamine-aminopropyltransferase	gnl\|CDD\|235139	PRK03612, PRK03612, polyamine aminopropyltransferase.	0
NC_009901.1\|WP_012156688.1\|4262330_4265525_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	0
NC_009901.1\|WP_012156695.1\|4275089_4276625_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	0
NC_009901.1\|WP_012156693.1\|4273936_4274278_-\|DUF3622-domain-containing-protein	gnl\|CDD\|315050	pfam12286, DUF3622, Protein of unknown function (DUF3622). This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.	3.7415e-25

>NC_009901.1|WP_012156686.1|4259669_4260938_+|inorganic-phosphate-transporter
MVDVLVTNGPWLIGIAALFGFLMAWGIGANDVANAMGTSVGSNAITIKQAIIIAMIFEFAGAYLAGGEVTSTIRNGIIDSAYFVDSPELLVYGMISALLAAGIWLVFASALGWPVSTTHSIVGAIVGFAAVGVGADAVAWGKVGGIVGSWVVTPAISGFIAFMIFQSVQKLIFNTDNPLENAKRYVPFYMALAGFVMSLVTVKKGLKHVGLDFSNGEAYALSLALAVLVGIGGMIAIKRLKMDSKADRQTQFGNVEKVFAILMVVTACCMAFAHGSNDVANAIGPLAAVVSVVESGGVISNKADLVWWILPLGAVGIVLGLAIFGQRVMQTIGKNITHLTPSRGFAAELAAASTVVIASGTGLPISTTQTLVGAVLGVGMARGIAAINMGVVRNIVVSWVVTLPAGAGLSIIFFFMIKGIFN
>NC_009901.1|WP_012156685.1|4258964_4259645_+|TIGR00153-family-protein
MPVNSILGVFAKSPIKPLQEHIDKVYDCASLLVPFFEATVAGDWDKAVQLRKQISFAEQEADSLKREIRLTLPGGLFMPVERTDLLELLTQQDKIANKAKDISGRVIGRQLELPLVIQEPFIAYLQRCLDAVSLSKEAINELDDLLETGFRGREVDLVAKMIAELDSIEEDTDDLQIKIRRQLFSIESELSPVDVMFLYKIIEWVGDLADLAERVGSRLELMLARV
>NC_009901.1|WP_012156684.1|4257244_4258732_-|CYTH-domain-containing-protein
MDAEIELKLFFNENEKKSLINLLDSLPSCDAKGREVLTNGYFDTPDLTLRKWDMGLRIRGINQHLEQTIKTKGQVVGGIHSRPEYNIDIDQNFPQLNLFPNKIWPEGANVEQTQSELYCLFNTDFARQRWHVFVDDSLVEVALDMGEIRVGEAVDPICELEFELIAGDTSALLTLAGIVSRAIPVRLGKASKAQRGYQLAGQSSIESIEALKFIEIDPQQSLKHVAINLLAVGLDRWQTIEALILAPTQNIMALPMLSYRLRACIRLLKNTLKQFGLLEDSFQTDFDCIEQRLNFIEEGLSLYSIIENDAALVAKLPMHQALVDVALVKLQQLNIIEQAEALLGDICYGRLQVHLVDLLMQLNDGKVIIDKALDLRSFADKIQENSWQRILDVMPRDNELSSSDYLSVAKALDDSIFVGVAYGGLYSEKSRDQFRAPWQDLALGIRTLAAYRQLKMISETAYLDISGWLENKEQSLVQAMEFSRRSAMLNEPYWR
>NC_009901.1|WP_012156683.1|4256342_4257140_+|potassium-channel-family-protein
MANKKRWLLQPETPPTPIQLAMMLLSLLSVIVVLVLTFGRVDGETKRLLFMIDFSICLIFMSNFFFELFKANEKASYLKHHWIDFVASIPAIEALRMARLFQILRVIRLIRMSRSLIVPMLKQRRQATIASLLVALITILTFASVLVLIVESGVEGANIDTAESAIWWALVTISTVGYGDYYPVTTAGHIIGGVVIVCGVSFFGVISGYMASVFVAPDEAEKLDSHTEEIRSELNTSLARMEANQEKLIAELNELKQAIEDKKPE
>NC_009901.1|WP_012156682.1|4255954_4256284_+|hypothetical-protein
MTKQTKTLPAQWQQNQKAAKATQIAFDLDEKFQYAIRKAALDAGVSPSDQIREILGLTVTKRPKRPRLTVSLSPTDYEMLAEKYNLSADQQLEIKKYVLDDLIQFSADK
>NC_009901.1|WP_012156681.1|4255187_4255838_+|hypothetical-protein
MGFLSSLFGKKEEPKRQLDHPTKLNKGDMISLDDSFALPPQLRGQQLRVEAVNTYEYQRKQQTEWVLKGHSGDAIFLSLDEDDETYLALSIKISRGQVEQFFDLDQFSDIFEEAGKAELDTQTLSPDLNDYEQWLSPHYHQVTTGSFGYFHRQDYRGLRPPQDAEGATGEPFESYQLLDDDEDKAVDVEVYESGDTDVMLTLYRPLSDIREYWPGA
>NC_009901.1|WP_012156680.1|4254486_4255176_+|PspA/IM30-family-protein
MGILNKILTAFRGGATEVGQGIVDANSTRIFEQEIRDAEKHLTKAKRDLTEVMAKEMQASREVDRLKRSIAEHEGYVTQALEKGDEPLALEVAEKIAELDQELNDQQSANDSFSAHATRLKELVRKTERQVTDYQRQLTMVKTTESVQKATATITDSFAGSNSKLLNAKDSLERIKARQQSFDDRLKASETLAEENSDKALHDKLAAAGIGEQKSNANAVLDRIKARKG
>NC_009901.1|WP_012156679.1|4254060_4254474_+|DUF2170-family-protein
MNIHTIANHLNELGDNSHTGFQFDCYPINGDVEVLQVNVVGREEIPVFVSVTDNQILCISYLWGEDEVNQERRSEMFETMLELNIPMPLSSFAKIDDKYVVYGALSVHSSMQEIEQELSVLSDNCLEVIDELVDYLN
>NC_009901.1|WP_012156678.1|4252241_4253969_+|polyamine-aminopropyltransferase
MQTDSNNSTTESSNPTIESGKLGWFDDVLLLGIMAVLAGCGLIYEYLLSHYAGRILGALEAAIYTMIGLMIVSMGLGAFAARKIRCAFTGFAVLELCVALCGSLAILITAAVIGFGQQLPLVIANTLGLPADQLPDGGFIGTLQKLSEYLPYVWGVLLGLMIGMEIPLIARVRQALSEAHLMHNAGTIYGADYVGAGIGAAIWVGFMLAIDIQLAAALTASFNLLAGFIFIWRFWHQIRHVKLLLVGHFIATGILVLLALHGPSWEQSFNNLLYKDKVVYAKATRFQQLTFTERLRGNGLGPVHSLYINGRLQFSSSDEHIYHSFLVHPTMAASARHDKVLIIGGGDGLGLTQVLQWQPEQVTLMDLDKELVELFKQPASDMPDHLSRALLALNQDALNDPRVRIMYEDAFNGVDKLLAKEEKFDVIIVDLPDPSHPDLNKLYSDAFYLKLKELMSNDAALTIQSTSPYHAPNAFISVGKTLELAGFRVDQYHHNVPSFGEWGWSIATLGGKSARTRLQSLQQLPVDDPWLTPGLIHAAFEFPGNFYQNKAEIKPNVLGSSQLYQYHQQAWLENQ
>NC_009901.1|WP_012156677.1|4251226_4252126_+|DUF350-domain-containing-protein
MTFLENYGLTPDLMIILFIDITIAVLLLTLMRYLQGWTVKVDSRHELAENDNFAFGISTAGAVMALGIVLTGAITGEAAESYLVEAIGMTAYGLFGLILIKLGRFLHDKIALNNIDKNALIIKGNLSVAIVDATAAIATAIIIRSVLMWAEDLTVYTFIAIFSAFAISQLMLVLLTRGRENRYAKRNQGASMQKAIAEGHVALAIRHSGYMLAMAFSFNAASHFIIFDPQAYVANLIGWLIFSVVMLLSLSLLITLVKKLVLAKINLCEEVEKQHNIGLAFVEVAISVSIAIILAALMA
>NC_009901.1|WP_012156688.1|4262330_4265525_+|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA
MEAIIMFKASEVLAGHYDTADLNELFQAISDNYIVDEEQYLSDLIKLVPSSDEEINRVTTRAHELVNKVRQYDKKGLMVGVDAFLQQYSLETQEGIILMCLAEALLRIPDAATADALIEDKLSGAKWDEHLSKSDSILVNASTWGLMLTGKIVKLDHSIDGKPSSLLNRLVNKVGEPVIRQSMLAAMKIMGKQFVLGRTVKEALKNSNDKRKLGYTHSYDMLGEAALTKKDALKYFEDYSSAIASLGAQEYDTSDAPRPTISIKLSALHPRYEVANEDRILTELYDTLILLIKQARSLNVGISIDAEEMDRLELSLKLFQQLYNSDAAKGWGLLGIVVQAYSKRALPVLCWLTRLSKDQGDEIPLRLVKGAYWDSELKWAQENGEGGYPLYTRKAGTDVSYLACARYLLSDATRGAIYPQFASHNAQTIASITDMAGDREYEFQRLHGMGEELYDTLLAESGVKNVRIYAPVGAHKELLPYLVRRLLENGANTSFVHKLVDPKTPIESLVGHPLTTLMGYRSLANNKIVMPEDIFGAERKNSKGLNMNIISESAPFFAALDKFKDTTWSAGPLINGETLTGETKEVVSPFDTNLVVGKIAFANNQAIEQALSSAEAAFPSWCNTPVEVRANALQKLADLLEENREELIVLCTREAGKSIQDGIDEVREAVDFCRYYAVQAKKMMAKPELLPGPTGELNELYLEGRGIFVCISPWNFPLAIFLGQVTAALAVGNTVIAKPAEQTSIVGYRATQLAHEAGIPKDVLQFLPGTGATVGAAITSDERIAGVCFTGSTATAKLINRTLAMREGAIIPLIAETGGQNAMVVDSTSQPEQVVNDVVSSSFTSAGQRCSALRVLFLQDDIADRVIDVMKGAMEELTIGNPNSVKTDVGPVIDAAAAANLNAHIDHIKQVGKLLKQVELPENTKNGYYVAPTAVEIDSIKMLEKEHFGPILHVIRYKSSELDKVIAEINSTNFGLTLGIHSRNEGHALKLADKVRAGNVYINRNQIGAVVGVQPFGGQGLSGTGPKAGGPHYLTRFITEKTHTNNITAIGGNATLLSLGDSED
>NC_009901.1|WP_012156689.1|4265878_4267759_+|methyl-accepting-chemotaxis-protein
MNLTIKHKIQLAVLMTILAISATLATLSTRQLTHDTEMAISTRFKLQAESVTNNIFSWLEDKKRIVKANESRIKRGLDSDRELWLSINSGGFIDVYAGFDTGDIISGDKAQPWPEDYDPLTRPWYKLAYNSSEMIITPPYVDITGAAVVTLAQRFNGAMNGVLAADLSIGYITEQINNLQIDNAGFAFLLDEHNKVLAYHDTNYAQKDANRLAQSLTAPNIESLRDQGEITTIKWQDGSEKLLRLTKLKGTNWTLGLVEDRDLAYQAIEEQVINKLIVVVILAFIILIIASVIVNHMFKPLQQLSNAIEALSKGDGDLTQRFAARKQDEIGQLESHMNRFLESLQLMVRAISSDTELLIKQINESSDIAAKASEGVNGQHQDVDQIATAIHEMSATASEVANHAEMTASAAQVSTQACVEGNEVIVKSSDSIEQLSQQLGDASKVVSALEENATEINQILSTIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSHRTQDSTEEIRSMIATLQQNSQHAVSSMASSTNIAKSSVEFANQAKHSLERITDSITEISDMATQIASAAEEQRAVSEDISRNTQAISDTSNELSHQTQEVSDNAQLMLQTSGELSERVSRFKI
>NC_009901.1|WP_012156690.1|4268075_4269956_+|methyl-accepting-chemotaxis-protein
MNLTIKQKIQLAVLLVIVTITAVLALISTKQLNQHTEHAIATRFALQGEAVSNNIFSWLADKKRIISANEAPLQNGLDNAKELELSIRAGGFINLYMGLDNGKVISGDKSVEIPADFDGRTRPWYRDAFNSHEIITTLPYVDISGDTVVTLAKRFNGQFSGVLAADLSISYITQQIDNLNIANSGFAFLLDENNNILAFRDRSYAQQDAKRLSQQLTQSNIQTLRNSGEISTIEWQDGQDKLISLTQLKGTNWTLGLVEDKNLAYQAIEQQIQQSLFAVTILAIIILLIASVAVNYLFKPLQQLSLAIEALSKGDGDLTQRFAANREDEIGQLERHMNRFLASLQQMIKAISNDTEQLIKQIHESSDIAAKASDGVNGQHQDVDQIATAIHEMSATASEVANHAEMTANAAQVSTQACIEGNDVIIKSSDSIELLSEQLGDASKVVSALEENATEINKILSTIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSHRTQDSTEEIRAMITTLQQNSQQAVASMASSTDIAHSSVEFANQAKQSLESITDSITEISDMATQIASAAEEQRAVSEDISRNTQAISDTSHQLSSQTQEVTDNAVQMLQTSSSLSERVSRFKI
>NC_009901.1|WP_012156691.1|4270022_4271762_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALFPYIKRFKSQWFMMFIGLFLSVTTLMAGIGLLSLSGWFLSAAAVAGLTVATAQTFNYFSPAGGVRFLSIVRTASRYGERLATHEATFSLLTDLRCWVWNKLLPLSAKNLQGVRQGDLLNRLVADIDTLDHLYLRLITPLAASLLMMLALYFFVGHFDPELARTLCSLLLAVWLLLPTSFYFLGRWPGIAQLETKRLLRVQLLEYLQGQAELTLFGAQKAYRDRLNQAQSAMINSQNAMNRVTALSQACLILCHGFAVLLMLYLAATGVGSAVPPGPRLAMIVFLTMATIEMMMPLAGAFQHLSACSSAATRLNEVVEQSPSVTFAQQASVEITSGNIGFNQVDFGYVENQCVLKGLNLEIPAGKKVALLGQTGCGKSSLLSLLTREWLPSQGLITIDGHDVADYTEQQLRQAISVVSQRVYLFSGSLRDNLALAIEGATRKDDDKLIAVLQKVGLDCLLQGEKPLDTWIGEGGRQLSGGEQRRIGVARVLLRDAPILLLDEPTEGLDKRTEREILRLLFEFAEGKTMLMISHRLTAMNKMDTIHLMDQGGIRTSGNHAQLLDSDDYYASLYQRLV
>NC_009901.1|WP_041411082.1|4271761_4273582_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MDKTVEKKLTKWLKQQKKACGFYLNLSVFFGVLTGLSLMCQAWLIATVLQGIIIDELPKSDFINHFWALLALTVVRGVLAFARERASFQAGARLRVQMRGAVLDKLALLGPAFIKGKPAGSWASIVLEQVEDLQDFYARYLPQVVLAGFIPLIILVAVFPINWAAGLILLATAPLIPMFMILVGMGAADANRKNFSALARLSGHFMDRLKGLSTLKLFNQGEKEARVIRKASEEFRERTMAVLRMAFLSSAVLEFFAAVSIAVLAVYFGFSYLHHLNFGHYGVSISLFTGLFVLILAPEFYQPLRDMGTHYHAKAQAIGAAQELMALLDHPTEQYGGDKQVNGAVEIEAKDVSVYSLDGSLLLGPVSFQIETNEHVAIVGPSGAGKTSLLNALLGFLPYKGQLKIAGTELSELALEDWRKQLAWLGQEPQLFHGTLRDNIAMGRALSDEAICKLLEQAQILDFVEQQPLGLDYPIGEQTAGLSVGQAQRIALARALAQQSQLFILDEPTASLDSLSEQAVQSALTAAMQGKACVMVTHRLENLSAMDKVLVMEKGIIVQQGTYEELASKPGTFKQMLEEAASVSEFELKVDTQDAHMQQTQAEGDK
>NC_009901.1|WP_012156693.1|4273936_4274278_-|DUF3622-domain-containing-protein
MTQTKKYDFRVVADGATWTGQITRRQTARKIVVSKSKKGFATEAEAQAWGETELKSFLENLIKRNERKAKARGERNEAAEAKELAADAWRNARPSKESGFDEDNLDYESDSEG
>NC_009901.1|WP_012156694.1|4274482_4274683_-|DUF3565-domain-containing-protein
MLQPIVSYHQDDENHWVANLSCGHTQHVRHRPPWERRDWVIHREGRNAMLGYKLNCKLCELDSGME
>NC_009901.1|WP_012156695.1|4275089_4276625_+|DEAD/DEAH-box-helicase
MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSKGTKAPAKQVRALVLTPTRELAAQVGESVETYGKNLPLKSAVVFGGVGIGPQITKLNRGVDILVATPGRLLDLYNQRALSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVQQWVCPVDQSQKTAVLVKLIKQNDWQQVLVFSRTKHGANRLAKNLEAKDITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSNEETKLLRDIELLIKQNLERRVVEGLEPTHNLPETDLTGKSHGQNRGPRNSGNQSRGNGRSRSPNSGGAGNKPPQRRQSNGQNNAQNSNDGAKTEHRDGQRSGEMARGHQPSPNSQPSKPRRQRRPNTANGNSNGGPERSQSKPSGQRRSNANRSANKPSQNS
>NC_009901.1|WP_012156696.1|4276819_4278229_-|ATP-dependent-RNA-helicase-DbpA
MTQTVPNTEGQAPFSSLKLKTELLDNLKTMGYDSMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLHKLDVKRFRIQCLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMDRMPIERQTLLFSATFPEQIQSIADKIMFKPVLVKVASTHATSTIEQHFYEVGNNNDRMRALKLLLLQYRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYNDEDGYKIALLEDYLERDIVNEALPSEHLLDTFPVQPVMITLQIDGGKKQKLRPGDILGALTGENGIEGSEVGKIKITDMRAYVAVNRKVAKKALQKITNGKLKGRSYRAWEMR
>NC_009901.1|WP_012156697.1|4278570_4279266_-|DUF3313-domain-containing-protein
MTATRIFILTMTLLLTGCGVVQDYRNSQMFSSFEDFRPGPEGGSDLIWAQPGIKSLEDLNHILGQYDNVIVDQAWLVLDDKTRYDNLDEQDIIEVSRYLVSKIKDKASKRFNVIDQDTLNSDSAKTLRVSVALTNIETPNPILAVTSSLLPVGLGISSISKVVTGEHTNVGSATIELMISDAKTGQPIVAVIDRKAGSKDFSTMIDSTDDAKDAVDWWVERLGSTLRGEAL

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Crispr_ID: NC_009901_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009901_5

4423412-4423566

Orphan

Consensus_repeat	Method
AGTTAACCCCGTTCGATTACCTGATAGAAGATAGCGACTCATTGATGACAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009901_5

>merge|NC_009901|5|4423412-4423566|CRISPRCasFinder
AGTTAACCCCGTTCGATTACCTGATAGAAGATAGCGACTCATTGATGACAACCTCTGTTGATGATAGCTATCCATTCCACTGAAAATCGTGGCGCTGCAGCTTAGTTAACCCCGTTCGATTACCAGATAGAAGATAGCGACTCATTGATGACAAC

>NC_009901|5|5|4423412-4423566|CRISPRCasFinder
AGTTAACCCCGTTCGATTACCTGATAGAAGATAGCGACTCATTGATGACAAC	CTCTGTTGATGATAGCTATCCATTCCACTGAAAATCGTGGCGCTGCAGCTT
AGTTAACCCCGTTCGATTACCAGATAGAAGATAGCGACTCATTGATGACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009901.1\|WP_012156819.1\|4413298_4413973_-\|OmpA-family-lipoprotein	unknown	unknown	gnl\|CDD\|182507
NC_009901.1\|WP_012156824.1\|4418362_4419400_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_009901.1\|WP_041411634.1\|4419529_4420210_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_009901.1\|WP_012156837.1\|4430008_4430839_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_009901.1\|WP_012156826.1\|4420212_4421562_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_009901.1\|WP_012156835.1\|4428727_4429324_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224049
NC_009901.1\|WP_012156834.1\|4428194_4428485_-\|DUF134-domain-containing-protein	unknown	unknown	gnl\|CDD\|224261
NC_009901.1\|WP_150102322.1\|4416923_4418354_-\|phospholipid-carrier-dependent-glycosyltransferase	unknown	unknown	gnl\|CDD\|224720
NC_009901.1\|WP_083766695.1\|4412231_4413023_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|235129
NC_009901.1\|WP_012156827.1\|4421587_4422163_-\|lipase	unknown	unknown	gnl\|CDD\|376727
NC_009901.1\|WP_012156829.1\|4424024_4425194_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
NC_009901.1\|WP_041411099.1\|4425442_4426579_+\|23S-rRNA-(uracil(747)-C(5))-methyltransferase-RlmC	unknown	unknown	gnl\|CDD\|235128
NC_009901.1\|WP_012156821.1\|4414840_4416376_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379232
NC_009901.1\|WP_012156836.1\|4429307_4430015_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NC_009901.1\|WP_041411096.1\|4414425_4414641_+\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012156832.1\|4427212_4427536_-\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012156838.1\|4430831_4431809_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_009901.1\|WP_012156833.1\|4427643_4428192_-\|NifB/NifX-family-molybdenum-iron-cluster-binding-protein	unknown	unknown	gnl\|CDD\|238431
NC_009901.1\|WP_012156831.1\|4426883_4427093_+\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|226113
NC_009901.1\|WP_150102251.1\|4416486_4416939_-\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229

Protein	Function_ID	Function_description	E-value
NC_009901.1\|WP_012156819.1\|4413298_4413973_-\|OmpA-family-lipoprotein	gnl\|CDD\|182507	PRK10510, PRK10510, OmpA family lipoprotein.	2.42232e-80
NC_009901.1\|WP_012156824.1\|4418362_4419400_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.05669e-91
NC_009901.1\|WP_041411634.1\|4419529_4420210_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.73153e-64
NC_009901.1\|WP_012156837.1\|4430008_4430839_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.50328e-49
NC_009901.1\|WP_012156826.1\|4420212_4421562_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.14685e-31
NC_009901.1\|WP_012156835.1\|4428727_4429324_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224049	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.19718e-54
NC_009901.1\|WP_012156834.1\|4428194_4428485_-\|DUF134-domain-containing-protein	gnl\|CDD\|224261	COG1342, COG1342, Predicted DNA-binding proteins [General function prediction only].	6.00625e-29
NC_009901.1\|WP_150102322.1\|4416923_4418354_-\|phospholipid-carrier-dependent-glycosyltransferase	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	4.95069e-43
NC_009901.1\|WP_083766695.1\|4412231_4413023_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|235129	PRK03537, PRK03537, molybdate ABC transporter substrate-binding protein.	3.74721e-114
NC_009901.1\|WP_012156827.1\|4421587_4422163_-\|lipase	gnl\|CDD\|376727	pfam02089, Palm_thioest, Palmitoyl protein thioesterase.	1.40629e-10
NC_009901.1\|WP_012156829.1\|4424024_4425194_+\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.12528e-68
NC_009901.1\|WP_041411099.1\|4425442_4426579_+\|23S-rRNA-(uracil(747)-C(5))-methyltransferase-RlmC	gnl\|CDD\|235128	PRK03522, rumB, 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC.	0
NC_009901.1\|WP_012156821.1\|4414840_4416376_-\|VCBS-repeat-containing-protein	gnl\|CDD\|379232	pfam13517, VCBS, Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella. This domain of about 100 residues is found in multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion (TIGR).	6.78033e-06
NC_009901.1\|WP_012156836.1\|4429307_4430015_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.72067e-41
NC_009901.1\|WP_012156838.1\|4430831_4431809_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.41731e-77
NC_009901.1\|WP_012156833.1\|4427643_4428192_-\|NifB/NifX-family-molybdenum-iron-cluster-binding-protein	gnl\|CDD\|238431	cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).	4.2544e-20
NC_009901.1\|WP_012156831.1\|4426883_4427093_+\|TOBE-domain-containing-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	8.24731e-20
NC_009901.1\|WP_150102251.1\|4416486_4416939_-\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	3.10235e-15

>NC_009901.1|WP_012156827.1|4421587_4422163_-|lipase
MKVVLVHGIFNTGHVMRLLQKRLQQAGHQCFSPTISPFDGRHGIEHAAKELSQQIDAVYGVDANIVLVGFSMGGIVGRYYLQQLGGARRVSQFFSLSTPHNGSYLAYLPYPSKGIKQLRPKSALLAELARSEAVLEGVKLYSYWTPIDFTIVPSSSSFWRVANNKRFIIILHLSVIFSRRIAKAINNEIEG
>NC_009901.1|WP_012156826.1|4420212_4421562_+|HAMP-domain-containing-histidine-kinase
MLKRLLNRVPSASKLPQKLLIYFSSIALMIGLTLYISMLSLMQWIEDEVNQHELESSAPFAISLFQQGAKQPLQIGLHVEAYYSAELIPEQYGDLSQFPNGFSGEVVDRGESGLLHEIFNFNLLVNDTLGVNNELFLYRSEFELNGTMQPLYLIMPSENVELSDSEWRSINLFVLGFIGMLFLLFGFAIHKLSRRLVEPVEQLSKQLQSPEMHKTFNVPPQSAAEFSELANSLNDYRQQNEQMIKQEQAFARYASHELRTPITVISGAAKLQEHNNAPEFQARQRDRIQRAAFEMQHTVDALLSIVKQEKGTENNDYRALELKEIEQIIAPLLLLANAKNIHIILDFKQAPLIKPSPAVLRMLLSNVISNAINASDSGEIAIRIDKEQIEIIDMGRGLSSSENRNEEGHGLGLLIVDSLCQRYQWQFSLIEIAPKGCCARLTLPVTENN
>NC_009901.1|WP_041411634.1|4419529_4420210_+|response-regulator-transcription-factor
MTIKLLIIEDNSDVAGILGDFFEAKGMELDFADNGELGLSLAQAFDFDAIILDLMLPKLDGLSLCKALRSLGCSTPILMLTALDNKSDLLTGFDCGADDYLGKPFDLDVVDARVQALIKRHRGQVAQGVLKFGDIEINIAKHQASRHNMQLALTPITYQILLLLIKSAPNIVKREQIIEEIWGQTPPSSDILRSHMYQLRNQLDKPFKQPMLATVPKIGFRLQLGE
>NC_009901.1|WP_012156824.1|4418362_4419400_-|glycosyltransferase-family-2-protein
MSYSSPDQTNSHSEICLSVVVPLFNESKMIKPLIERLTAVLSRLDDSSEIVFVDDGSSDDSWSQVSQLPLVDNEYQCIKLSRNFGKEAAMSAGIEHARGLVVIMLDADLQDPPELLPEMLAQWRAGYDIVNMKRRKRLGETWFKRFSAGCFYKLMNWVSDSPVPENVGDFRLMSRQVIDSIKALPERNRFMKGLFSWPGFSQKTLEFDRDPRFIGETKWNYGKLFGLAMDGITSFSFKPLRLATWCGVLTALCAFGYGGWIVVQTLIFGGSVAGYPSLMVVQLALAGIQLLALGLIGEYLGRVFVEVKQRPLYLIEEVAYRHSLAQVQARNSDIKQDNVSYLGAK
>NC_009901.1|WP_150102322.1|4416923_4418354_-|phospholipid-carrier-dependent-glycosyltransferase
MRDSQKGLAVLLIVVLTRLLLLPWYPLMDTTEARYGEMARLMVETGNWVTPLFDYNVPFWGKPPLHTWMSASSLAVLGSNEFAVRLPHWLAAMFTLAVVGYFAKGLRLPVMSVLIILASTVVFTISAGAVMTDMALTLGMTLAMVGFYLCWQGDKLWGYIGFAGLAIGLLAKGPVALVLFAIGTGLWLMWNYGLQKMWRLLWLRTPLLTGTLLMLAITLPWYVMAERATPGFLNYFIVGEHWSRFVDSGWQGDLYGSAHDEIRGSIWLYFIGAAMPWSLFLPRAIYKLVKQSKSAATAVEAGVGKETGTETGSETGEGLASYLFCWMIAPMLLFTLAGNILPAYVLPGIPGLALLLGLAWRSSRLPGLNAIALCIPVLLLVTVVVLNLGTAKDKSERWLLSQRSEALPTYYWQKQPFSARFYSAGQADKVDSLQEVDSISDFYLVADNRKLDLPQFSRCVEVARNKYRGLLLCRRN
>NC_009901.1|WP_150102251.1|4416486_4416939_-|GtrA-family-protein
MSSKLTTVPVPELETLWLKHGQGIRFLLVGSAVFMFDAALFYGLLSVFEQPLMLARCSAFACVVIVSWAANRSWTFVERKQVSKPQQLLMSAAVSSLAAVVNLTVFYLCSTVLSNSPLSGLLSFSLGILAGLIINWFGANRWTFKAVAVE
>NC_009901.1|WP_012156821.1|4414840_4416376_-|VCBS-repeat-containing-protein
MIFSNMRSILNGGGAALLLCSTLPLSALAASGATLSFTESAIDAPFELTHPIIAADLLPEPGKELVILGVDGLSHRWMAIYAFEKGQYQLAMKRELPQELHSFDITESTAGELQQLYFLSQDELKLLVSKENSSELYIETVAKINSLSFKDRPDFISRGDFIQDLNGDLRDDILIHDFNQVHLFLAGEQGFGRQTLPIKPQSRLFDDGATYTQSKLYVSDINLDGLVDIVKIGEGELEVYKQTQARGFDPIAEFISVRQPISGVDWWNKRDAFGEQLDQSELVYRKVEQLKDLNADGVTDMVIRYTKSSGVFDRVNDYEIYLGENNKGVLVFPKEASSVIRAEGTLTGLEFVDIDSDDKDEVMVAGFDIGVSQIIGALLSGSIDQDVHLFKMDSTGRFSDDSNVTKEVELNFSFSSGQAGSPVVKLADLNGDGLKDLLLSEDESTLKVYLGKRGDGLFSRDAQEHELKLPIEGGMLKAEDLNGDGREDLLIKYGRQDDKKLSKQFRVLLAS
>NC_009901.1|WP_041411096.1|4414425_4414641_+|hypothetical-protein
MEAMNLNLKVINEVKNNGRLLSDVAKDYGLSTKTVYQIVQESEQRSNRGSLPILKQTKQLSLRIKQLLSRR
>NC_009901.1|WP_012156819.1|4413298_4413973_-|OmpA-family-lipoprotein
MSVKPSSILAGGLIAAMLVSGCQTTNPYTNESQNGKATNGALIGAIAGAAIGVASSSKSDRAKGALIGAASGAALGGGIGYYMDVQEAELRKQLQSSGVSVTRSGDNIILNMPNDVTFGVDQTDLSQRAKQVLNSVVLVALEYDETKLNVMGHTDSSGAESYNLRLSQVRASEVANYLTRQKVPAQRVASHGMGESKPIASNETKQGRAENRRVEIILSPMPNA
>NC_009901.1|WP_083766695.1|4412231_4413023_-|molybdate-ABC-transporter-substrate-binding-protein
MKKWILVSLLSLPFVVNAEPIELRAAGSLKNAMNDIVMAYQQVAQKDVHADFGPSGLLRMRIEDGEKVGVFASANMKHPLTLQSSGKGDNVVMFARNQMCALAQPNVNTDSEGLLAVMLDPNIRVGTSTPKADPSGDYAWKIFAKAGKLQAGAQTKLENKALQLTGGENSAKAPKGRNTYAWVMENKRADLFLTYCTNAVLAQKEVQDLQIVQMPEPLAVGANYGLIVLDDAQADAWKLAMFILSESGQSILADYGFDAPLKQ
>NC_009901.1|WP_012156829.1|4424024_4425194_+|MFS-transporter
MENSAYKPYKNSTFVPVAGLSFFAIASGFLMSLIPLSLASFGMDSSLVAWLASIFYLGILVGTTCIQNIVAKVGHRFSLILFLAMLTLTIVAMLVIPTATVWLIARFIAGFAVAGVFVVVESWLLMADSAKQRAKRLGLYMTSLYGGSALGQLAIGPLGVNGNTPFYWVIGLLMLAILPPLLVKKGQPESMEHQKISLREVKKISLPAVIGCLVSGMLLGPIYGLMPSYINGQFASNERTAFLMAIIILGGMLVQPLVSYLSTRISKSLLMALFCLLGTIGIVGIADGTSVSFVTTCYFLLGASCFALYPIAITLACETMALEKIVAATELMLLSYSVGSVFGPVIAEHSSTSAHSLITYLAVVLTTTSIYMLIKSLQNTRSGHTPAIG
>NC_009901.1|WP_041411099.1|4425442_4426579_+|23S-rRNA-(uracil(747)-C(5))-methyltransferase-RlmC
MKCAHFDQQQCLSCRHIKQSMSVQVAAKSQVLSQLLSDFEVEQWHEPVFGPDSGFRNKAKMVVLGAAHQPILGIVTPTGEPVSLCDCNLYPEDMQLLLHRLEQFVRQAGIPPYNVDKAKGELKFILLTRSQIKGEYLLRFVLKSHKSIERIERELPKLLSEYPQIKVVSVNIQPVHMAILEGEEEIFLTEETRLSEQFNDVPLFIRPKSFFQTHPQIAAKLYQTAREWVAELKPSSLWDLFCGVGGFGLHCASKTIPLTGIEISSEAIACAKISAETMGLTQVDFTALDSTGFAQGCDATDKPDVVIVNPPRRGIGESLCQSLSDFAPKAILYSSCNPHTLAKDLANIQGYHIQKVQLFDMFPHTDHFEVLVMLVKPS
>NC_009901.1|WP_012156831.1|4426883_4427093_+|TOBE-domain-containing-protein
MKISARNTLNGTIKSIEEGSVNNEVVIELAPGVEITSVVTKKSCEQLGLVVGGSAYAIIKASNVMVAVD
>NC_009901.1|WP_012156832.1|4427212_4427536_-|hypothetical-protein
MAVLALGFMIMFLGLAFMGLPELNRVLKLHDRALWDSLQGSKASFISSFDRMTLFSWTLSRGFENSENIDIQYAGLLAYKRATRVKYIILAGISLIIIGSISALTGL
>NC_009901.1|WP_012156833.1|4427643_4428192_-|NifB/NifX-family-molybdenum-iron-cluster-binding-protein
MVIAIPMSRDRLATHFTKAPQISFYDEHQQLIASYDNPAMSGGCSAKKAMLNLIIDHKTDIVVVQHIGERMLGKLLDAGISVSQADNTLGLDELLCRAKDLNHRLVDASQGRASLNHEKKGGCCGGSSGGCGCSSGSSSGSSSGCGCSGKAASSNILDPRLVKMSPTQLSGEVQYASFRSIK
>NC_009901.1|WP_012156834.1|4428194_4428485_-|DUF134-domain-containing-protein
MSRPKKCRHLSCCVPYSLFKPNGIPSTQLEKIQLEADEFEALNLGDVQKMSQLDAAALMGISRQTFGYLLASARKKVATAVTQGQALLLPQIANKD
>NC_009901.1|WP_012156835.1|4428727_4429324_-|ATP-binding-cassette-domain-containing-protein
MLTLRNACLRRGEQKIAFPDLSLQSGEVLGLSGPSGVGKSSLASVLAGMVKADAERLELPTILPNQANPVQWLIQQSEFAFNPRLTLKASLNESWRGDGYLALLQEYGLEQSWLTRRPNQLSGGQLQRFNLIRALVPTTEYLICDEVTAHLDMVTQAQFWQQLLASAKRRNLALLVISHDEYLLNAICHRVIEWPCTR
>NC_009901.1|WP_012156836.1|4429307_4430015_-|ABC-transporter-ATP-binding-protein
MLTVDRLSIASNDICLLSPLSFSVAKGEVLGVVGASGSGKSLLAQALLGQVPSGFNLTGQVLHKSGDRRVLAAQSASVLDPLRRISSQLSYVLSRVPIGATRKKPFALAADITRCYRHQLSGGMAKRALLAQACWQASEIMIADEPCCGLDTPAAAGIYQHLSHLARNERVAVMVISHNLRQLLTVADRILVLREGKLVEITTSANIRSGACHSYTRSLWAALPEHWGVTDANAA
>NC_009901.1|WP_012156837.1|4430008_4430839_-|ABC-transporter-permease
MYKALRQPSFILASLSLLSLVILAFFWPWLGDELNLLNKYQAPSIAYPFGTDWLGRDLFSRSLQALAQSIYVGGLAVLMSSLLSLAMAMFAMLHPYCRWVVDLLVDLFMSLPHLLLLILFSLVFGGAEGGLVIAIALSHWPKLTRLLRFEMQQVQSTPYYRLAEQFGCKPWQRLRTHMLPHILPQWWIGGLLLFPHALTHMAALTFLGFGLNPDNPSMGALLAQASQYVLTGHWWLGVCPGLMLLVCLLLLSFIAQRLLVALRQGPQTHVKGEASC
>NC_009901.1|WP_012156838.1|4430831_4431809_-|ABC-transporter-permease
MSNLSSSILHTGLRLLLLLFLVVVFAYVLLSWSPLDPINAYLGGNVFAVSEAQKSLLVSQLALDQSVGERLMHWLSGLMQGELGYSSLYQQPVSSVIAEQLPLSLLLIGLSWICSLVFGYLLGLVAAIYRGGWLDRIIQKLAWLMVCMPSFWLAMLLISLFSIGLSLTPVCCAAPIGMTFMDQSLGSMVLHLMLPVATLTLVSMAPIMLHTREKVIDVLQSDYVQYSLAHGDSLSRVVLFHVIRNSLLPAIILQFATIAELFGGSLIAETVFSFPGLGAGIVKAGLASDTALLMGCTLISALLVFSGNLIANLLSGYFMLEANDV

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Crispr_ID: NC_009901_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009901_6

4922668-4922802

Orphan

Consensus_repeat	Method
CGAGCTTGCGAGTGCCCTATCTTATATGTTGGCGTCCTCGCAGGTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009901_6

>merge|NC_009901|6|4922668-4922802|CRISPRCasFinder
CGAGCTTGCGAGTGCCCTATCTTATATGTTGGCGTCCTCGCAGGTGCCTAGTACCGTCCTAGCAGTGAGCCTGCGAACGTCCTAGAAACGAGCTTGCGAGTGCCCTATCTTATATGTTGGCGTCCTCGTAGGTGC

>NC_009901|6|6|4922668-4922802|CRISPRCasFinder
CGAGCTTGCGAGTGCCCTATCTTATATGTTGGCGTCCTCGCAGGTGC	CTAGTACCGTCCTAGCAGTGAGCCTGCGAACGTCCTAGAAA
CGAGCTTGCGAGTGCCCTATCTTATATGTTGGCGTCCTCGTAGGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009901.1\|WP_012157242.1\|4922888_4923767_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_009901.1\|WP_012157245.1\|4926313_4927336_-\|DUF3137-domain-containing-protein	unknown	unknown	gnl\|CDD\|378641
NC_009901.1\|WP_086024380.1\|4925573_4926239_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NC_009901.1\|WP_012157237.1\|4916114_4916876_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377360
NC_009901.1\|WP_041411157.1\|4922093_4922351_-\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012157250.1\|4934083_4937242_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NC_009901.1\|WP_012157235.1\|4913064_4914483_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NC_009901.1\|WP_012157243.1\|4924016_4925414_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|236576
NC_009901.1\|WP_150102330.1\|4917159_4919451_+\|OmcA/MtrC-family-decaheme-c-type-cytochrome	unknown	unknown	gnl\|CDD\|274617
NC_009901.1\|WP_150102260.1\|4919777_4921013_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|214866
NC_009901.1\|WP_190272119.1\|4929159_4930704_+\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|367668
NC_009901.1\|WP_012157234.1\|4911515_4912655_+\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012157246.1\|4927423_4927993_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NC_009901.1\|WP_012157232.1\|4909374_4909662_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|185346
NC_009901.1\|WP_012157240.1\|4921069_4921912_+\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509
NC_009901.1\|WP_012157251.1\|4937251_4938403_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|184990
NC_009901.1\|WP_086024384.1\|4931262_4932858_+\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|367668
NC_009901.1\|WP_012157236.1\|4914602_4915862_-\|hypothetical-protein	unknown	unknown	unknown
NC_009901.1\|WP_012157233.1\|4909937_4911296_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NC_009901.1\|WP_012157249.1\|4933158_4933716_+\|phosphodiesterase	unknown	unknown	gnl\|CDD\|181869

Protein	Function_ID	Function_description	E-value
NC_009901.1\|WP_012157242.1\|4922888_4923767_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.32807e-35
NC_009901.1\|WP_012157245.1\|4926313_4927336_-\|DUF3137-domain-containing-protein	gnl\|CDD\|378641	pfam11335, DUF3137, Protein of unknown function (DUF3137). This bacterial family of proteins has no known function.	3.92503e-39
NC_009901.1\|WP_086024380.1\|4925573_4926239_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	4.03368e-49
NC_009901.1\|WP_012157237.1\|4916114_4916876_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377360	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This is a family of putative SAM-dependent methyltransferases.	3.93922e-152
NC_009901.1\|WP_012157250.1\|4934083_4937242_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NC_009901.1\|WP_012157235.1\|4913064_4914483_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	3.68913e-105
NC_009901.1\|WP_012157243.1\|4924016_4925414_+\|MATE-family-efflux-transporter	gnl\|CDD\|236576	PRK09575, vmrA, MATE family efflux transporter.	0
NC_009901.1\|WP_150102330.1\|4917159_4919451_+\|OmcA/MtrC-family-decaheme-c-type-cytochrome	gnl\|CDD\|274617	TIGR03507, decahem_SO1788, decaheme c-type cytochrome, OmcA/MtrC family. The protein SO_1778 (MtrC) of Shewanella oneidensis MR-1, and its paralog SO_1779 (OmcA), with which it intteracts, are large decaheme proteins, about 900 amino acids in length, involved in the use of manganese [Mn(III/IV)] and iron [Fe(III)] as terminal electron acceptors. This model represents these and similar decaheme proteins, found also in Rhodoferax ferrireducens DSM 15236, Aeromonas hydrophila ATCC7966, and a few other bacterial species. [Energy metabolism, Electron transport].	7.29184e-48
NC_009901.1\|WP_150102260.1\|4919777_4921013_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|214866	smart00862, Trans_reg_C, Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.	7.70165e-14
NC_009901.1\|WP_190272119.1\|4929159_4930704_+\|AbgT-family-transporter	gnl\|CDD\|367668	pfam03806, ABG_transport, AbgT putative transporter family.	0
NC_009901.1\|WP_012157246.1\|4927423_4927993_-\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	1.59293e-52
NC_009901.1\|WP_012157232.1\|4909374_4909662_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.34167e-50
NC_009901.1\|WP_012157240.1\|4921069_4921912_+\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	3.08875e-115
NC_009901.1\|WP_012157251.1\|4937251_4938403_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|184990	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA.	2.54719e-114
NC_009901.1\|WP_086024384.1\|4931262_4932858_+\|AbgT-family-transporter	gnl\|CDD\|367668	pfam03806, ABG_transport, AbgT putative transporter family.	0
NC_009901.1\|WP_012157233.1\|4909937_4911296_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.26335e-61
NC_009901.1\|WP_012157249.1\|4933158_4933716_+\|phosphodiesterase	gnl\|CDD\|181869	PRK09453, PRK09453, phosphodiesterase; Provisional.	1.15547e-103

>NC_009901.1|WP_041411157.1|4922093_4922351_-|hypothetical-protein
MKRILVVWLALLTLSSMGCSSSSVANAGCDFVSGAHGNEQQREQRESIGGSSAASTQNNKDVEVGILSAIFGVFARQINDDEECL
>NC_009901.1|WP_012157240.1|4921069_4921912_+|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MLSYRHGYHAGNYADVLKHAILLQVLKLMHKKDKPMAYIDTHAGAGGYALTDEFSKKTGEYLDGVARLWERTDLPESLVQYIEDVKHFNQGKAELEFYPGSPAFVDMNMREKDRMVLHELHGTDFLTLNEQFTGDRHVRVIKGDGLKGLIAAVPPLERRGVILIDPSYEIKTDYQDVAKAIIKAHKRFSTGVFMLWYPVVDRDQTEGMLKLLAESGIKNQLRIEQAIKPDSNEFGMTAAGLWIINPPWQLDTTAKEMLDYLERRIGHNGGKTTVRQEVAE
>NC_009901.1|WP_150102260.1|4919777_4921013_+|winged-helix-turn-helix-domain-containing-protein
MQLTPTLSLNVVQQHLVDAEDSSRIELSFAETAVLQLMLKHQGTLITREALLEAGWHDRVVSASSLQQCISVLRKKLANYPEVELKTIPRHGYVLHLANQSKNNYRFKKPKATLLFAVAVIASLLLLSYAYINHNQAPYNESLVNSKLSSVAGNIHVFTAAKQPKQSADDTNKRLKNQINDEPNWQAPFTSFTSFGLLSDKMDSFAICPDYQQNQCSGKQLINISSETKHGGQLELSDFLTTKIRMEQKTYNKLDLPELRKHQGDLKEQIYHGDLYFSIDDHRLVRSDIRISLVDLAPDSGIFYFAACITDEDCYTTPIRYEIRGHFKRTTEKWQQRTVERFDIEVSKTTLSSPNALSDTAQIIYLALRKQHLTQEQLSFYRIYQDDGTAIWQLPLVNDNIMWMQRQTLKL
>NC_009901.1|WP_150102330.1|4917159_4919451_+|OmcA/MtrC-family-decaheme-c-type-cytochrome
MMNPKTFNKKLCYATLLAACSIGMTACSGDDGKDGEDGQPGGNTSTQAEVLTLTLTSTTITDNILSIDFNAENELAIPVIKIAAIKVNAAQLLPQIEGERSQWQKLAGETCSPAKGCEGTLVDNMDGSYRYTMNAPLSMGEVSHNSDFTQRVLFSVLATDNLPATEVISDFKVDGSEIADNRSIIDASSCLSCHDDIASIKHGGANIENCASCHTSNNMDNPDMVWPVLAHTAHIGITPQALGNCTTCHAKEVSDTELQATNWNQVPTRETCSSCHDMTTNPVYDHSTQPDNANCLTCHSPENTYDVHMSKSEKAVAEDQRNIVNISLEQAKLVEQDGEHYAEISFALLDRQGDRIVVASNNPADADWIKNLQLYVNWGTSVDFTTSRGYSIFVKSNKKDITQDGSGNTPAGERERTPLHSAQDNVFTYLMGPIVTQDAISGDLIDDAGFITNRFIYCFDDAQNLVSCDQAGHTKNAEANKRWFFDKDGLTDAPEAKRPVIVSNKTCGSCHGYDEFNDNSELACRNCHSRNTEINKELADTTCFSGHDHDELGEHVRPFEERAMVAKGKPGFLSSTADIVDPCLACHNPNTPPTQAIREMHTKASDWDYVEQLTVSHPDHKVWMHSLHTNQRATQDRENGVRNIEFPADKANCYRCHEGDTFGVDRLTAVGRPLALDLDYNPDSRAHPATDITVDAYTSPVSATCYACHAKQEDASGKLVINKAVRAHMEQNGGRFGVTANELQVEACAVCHSLDNLKQVHNL
>NC_009901.1|WP_012157237.1|4916114_4916876_-|class-I-SAM-dependent-methyltransferase
MTSIFFNRHYPTIESACERWGLVYDPDAEFELVFEDNILTLIKRDEPKLKGISVDFVSGAVAHRRKFGGGRGQSIAKAVGLKQGVMPTVVDGTAGLGRDAFVLASLGCKVLMVERHPIVAALLEDGLRRAYEDAEIGGWMQQRMSLFHGSSIDSLADAAKASNTEVDVVYLDPMYPHREKSALVKKEMRVFQSLVGADLDADGLLAPAMALATKRVVVKRPDYADDLDGVKPSMVIATKKNRFDVYVKAAMTA
>NC_009901.1|WP_012157236.1|4914602_4915862_-|hypothetical-protein
MNITASIQDAVLTPFTRSIYQKASLVIGLGLLICSCFYDAQAFSIVLTGLVTVYVIVSFAFKPKLRQHIYLKGDSLRVLKSARMSGFDKWVFGFSIVIAAVSNTYALANITMVMVGIVAYQICLFSSVYRRLHRRDELVLPLTEKYLLLKNKQSNCLLLQRFDIYLLKQPIEEVQQAAEVLTSQSEVVEQAIEFVGSISLEEEPFEGDDAEAIIAQLNQHLSITIGNTVTKKSWRASVKPFLFAMAGLYTYVFLLPDLFKAIFPVGRYRNKFGDVIYRTESMSDLGVIFMMVIMFIMLALPCFAYLFSFYSDVKSRSFKAVCTTKDAIWLLTPAISGHESREILRAEMAHISWADVQAGAEDVGPPRLSIDGDIKLIGNDNQLISLNGWAWSGRFILNHLVKLGLPVRLVRQDNQLKVE
>NC_009901.1|WP_012157235.1|4913064_4914483_+|magnesium-transporter
MSLPKDELPIDNSQHHSDADYETPELAMVEVSQSVEQLTNAEGEQQAELFHDMLEEAEPGTVALLLESLPLDERYERWSQVDAGERIAVLDLMRADPRNGILDEMPEAQLDLLFSQISAEDLIEWSDTLSDAMTERALSQMGERQRQHYDRYDQYSENEIGRYAEHQFLALNLTSTVSQAQRFFRRIKLDCNDHVFLLDEDDKYIGSVRRHDVFRAAPESTLESLLWEDSRSILADASLIEAAEAIEHSNELEIAVVDANGIMIGRMTLRTATALVREHYESQLMATAGMDEDDDLFAPITVGARRRAVWLGINLLTAFLASATIGLFENVLEKVVALAVLMPIVASMGGIAGSQSLTLMIRGMAMGQISSGNFMSLLKNELGIGILNGVLWAIVIGLIAGWWFSDPIIGTVIGAAILINMAVAAIAGVVVPMILQKLNQDAALSGSVILTTVTDVVGFFCFLGLASVLYLY
>NC_009901.1|WP_012157234.1|4911515_4912655_+|hypothetical-protein
MIMKTRKTFCLSIITSAIVLSSFHTIAAEQEEDGINIHGGVRVNYAYKDYSETSKDKGGDFTFDMASLRFDAKHGNWGLKSDYRFTANTNYIKFGYGYYDFNPEWQLQFGINKVPFGNLGYISNSYWFGLPYYLGFEDDHDIGVKAVYEHNGWQTDMAFYKGAEYGPTENKRYAADLYSGTINGTEYHNEETNQVNLRQSYTMEHQGGSTTFGASIEAGQIYNSETGNNGDRYAFAAHLDSTFNGWNLQLQAMQYEFNAADSANDNKIAVSVVSWQFEVASKGQVYSANIAKTIPTDWGNVKFYNDFGLMTPDVDDDSYDNSMQNVLGAAISAGPTYTQIDFIMGKNMTFSTANNDHIGLPEVGDDWDKRFNVSVAYYF
>NC_009901.1|WP_012157233.1|4909937_4911296_+|MFS-transporter
MKPRTNFDDMEFTPLHRKIMLWGSGGPFLDGYVLVIIGLALQQLTPALELDAQWIGLVGAATLAGLFIGTALFGYVADIFGRKLMFMIDIIAIAVLSFATMFISSPIELVVMRFLIGIVIGADYPIATSMVAEFSPTKKRAYTMGFIAAMWYVGATAANMVGYLLYDVEDGWRWMFGSALIPCLIILLGRFHLPESPRWLLKKGRVKECKETMEKFFGPDVEISNESAEQTKYSKLFEPVYLKRILFIGIIWTCQVIPMFAIYTFGPQIIELLGFTDGKDAALGNIVISLFFMAGCIPAMYWLNSIGRRPLLIGSFGIMTASLALLGVVPDPSIWLIIGAFATYAFFSGGPGILQWLYPNELFPTEIRASAVGAVMSLSRIGTIVSTYALPIFMTTYGISPTLLVGAAISLFGLIISVFMAPETKGLTLETTSSAEFESKGAVVASNTCKTI
>NC_009901.1|WP_012157232.1|4909374_4909662_+|4Fe-4S-dicluster-domain-containing-protein
MSEVVNVDVKLGVNKFHVDEGHPHIILKDNPDMNEYRKLVNACPAGLYKLEDDGSIRFDSAGCLECGTCKFLCGETILEKWEYPRGTFGIEYRYG
>NC_009901.1|WP_012157242.1|4922888_4923767_-|LysR-family-transcriptional-regulator
MNWTIDELNAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSARLPVLTSLGEEMFIEAQSVLAQCQRLNARAMTVTSGEEITLTVAMDEAVPVTAFEALFQRISTQFPLLKLTIINGSQEDIAAWVDAGRADIGIMFHSNTLLPDSLDFMSIGQFKQSLVVAPSHPLASTPAPTLELLMQYRQLAICDITGQSQTPPLSANYWYIDSYYYIVALVLQGVGWALVPEHVAKSEWYIDDLCELSTEYITEPLLVEMGVVNRRDKQIGPIMHWLFDELHSVLQ
>NC_009901.1|WP_012157243.1|4924016_4925414_+|MATE-family-efflux-transporter
MLDPSIENTQTQSISRTFWRYTLPAIAAMLVNGLYQIVDGIFIGHYIGFEGLAAINMAWPVIYFMVGFGIMVGMGSGSLLSIQRGKGDTRAAPTILTSSLVLMLSLAIISTSILVICSDFFLEAQGGAGNTLVMAQEYISVFTWGTAITVIASALPLLIRNDESPNIATGLMVLGAFINIALDYLLIGVFDFGLLGASIATISAQATVCVLGLIYFCSRFSSINWSAKFSWFNASFAQQITLLGSSSLFMYLYTSFVFALHNRLFTEYGTPLTVGAFAIVGYLMVLYYLVAEGVAEGMQPPVSYYYGAEQHENINKMLKLSVKVTLIAGTSWVLLLNLMPETMVGLFNNDDPLLIATAIDGIKMHLFAMPLDGFIALSSVYFMATNQGVKALVIACGNMLIQLPFLYFLPKVMGVEGVWMAMPLSNIALCLIVAPMVWFDVKSRKKQSRAQQDNPLTIDTAAIVS
>NC_009901.1|WP_086024380.1|4925573_4926239_-|lytic-transglycosylase-domain-containing-protein
MAAETSKPHFVAKPSNKSVLGQAVTNHSLTSGTQSLGASVEQGEKVYHYLTADGVLVFSDQAPQEGHYQVLLFDCYACKPESNINWKSIPLFTSQYQQLIATAARTYRLDPALIRAVIHAESAFKPKALSKTGAQGLMQLMPATANELGVRDAFHPEQNILAGSRYLAQLLKRFNGDIALACAAYNAGASRVEQYKGIPPYPETQAYVERVQILLKRYRKA
>NC_009901.1|WP_012157245.1|4926313_4927336_-|DUF3137-domain-containing-protein
MNLFSFLFGASIKPIRNTDHLVAAPSEIDEFKQYYQQHLEPLTSKFENARVASLKACRQRLYLCAAIYIGIAILAFMFMPYLNFSDPLMVYLIGLVLLTLPFAWWVFRPIKHYKTDVKQKIYPLIFKYFGHDFIFCKEHKMSLSALKASKLLPYYESASFDDYVQGTYKNIEIAINELQLTKQVKRDKSTDTVTVFKGVMIELSSHKDFRGHTVVVKNRGGLVNFLSDSFKGLERVKLEDPIFEKQFDVFSTDQIEARYLLTVTFMERLQELSASFGNKIQCAFYRNKLLIMLGSKENRFEMASIFKAATFEYEFSQINKEMKQLFAIVDVLQLDSSTGL
>NC_009901.1|WP_012157246.1|4927423_4927993_-|LemA-family-protein
MEGLLLGSGLVVIIAYLWYVSLIKKRNAGREALSGIDVQLKKRSNLVPNILKIAQKYMDHEKSLLTEITELRTLAVKGYDDGDSGSVKAHLQVSEKLNQKMSQLMVSVENYPELKSDNTMLQAMQTYNEVEAQLSAARRFYNSAVSELNTAVEIFPGSIIASMASVKVMPFYEADEASKAPVDAADYLK
>NC_009901.1|WP_190272119.1|4929159_4930704_+|AbgT-family-transporter
MFVRFLNVVERLGNLLPHPITLFALFCAAVVVISGIAGYFELTVVDPRPEGASGRSADGLIHVVSLMNAEGLRMIVSNLVTNFTGFTPLGTVLVALLGVGIADRSGLLSAAMRLLVMGASKRLVTLTLVFAGIVSNTASELGYVVLIPMAAMIFHSLGRHPLAGLAAAFAGVSGGYSANLLLGTVDPLLSGITEAAAQMIDPDYLVGPEVNWYFMFVSTFLITFLGAFVTEKIVEPKLGKYDASEAAIDLSEQKMDTVSALEKKGLKIAGLAVLVMSAVLALTIIPEGAPLRNQETGLVAGSPFLKGIVAFIFVCFAIPGLIYGRVVGSMKRDIDVINAMSHSMSSMGMYIVLVFFASQFVAFFKWTNLGAVLAVSGADALNAIGLTGPLVFVLFIMMCGFINLMLGSASAQWAVTAPIFVPMLMLVGYAPETIQAAYRIGDSVTNLITPMMSYFGLILAVASQYKKNLGIGTLVATMLPYSIVFFIGWTCFFFIWVFVIGLPVGPGAATYYTP
>NC_009901.1|WP_086024384.1|4931262_4932858_+|AbgT-family-transporter
MHQSGGASLDPNNQVSGWFVRFLNIVERLGNLLPHPITLFAIFCAAVVVISGIAGYFELSVVDPRPEGAAGRSSDGMIHVVSLMNAEGLRMIVSNLVTNFTGFTPLGTVLVALLGVGIAERSGLLSAAMRSLVMGTSKRLVTLTIVFAGIVSNTAAELGYVVLIPMAAMIFHSLGRHPLAGLAAAFAGVSGGYSANLLLGTVDPLLSGITEAAAQMIDPDYTVGPEANWYFMFASTFIITFLGAFVTEKIVEPKLGKYDPSQAANDLGEAKMEQISAIEKRGLKAAGIAILVMSVLLALTVVPEGAPLRDPKTGLVSGSPFLKGIVAFIFICFAVPGLVYGRIVGTMKRDIDVINAMSHSMSSMGMYIVLVFFASQFVAFFTWTNLGSVFAVAGADALQAIGLTGPLVFVVFIAMCGFINLMLGSASAQWAVTAPVFVPMLMLVGYAPETIQAAYRIGDSVTNLITPMMSYFGLILAVASQYNKNLGIGTLIATMLPYTIVFFIGWTSFFFIWVFGFGLPVGPGSATYYTP
>NC_009901.1|WP_012157249.1|4933158_4933716_+|phosphodiesterase
MKLFIASDLHGSVIATQAMLTRFEQSGAQYLILLGDMLNHGPRNAIPDGYNPTALAETLNQYADKIIAVRGNCDSEVDQMLLQFPITASFAQVLMPQMRLFLTHGHIYNPDNLPPLQAGDALVYGHTHIAVAEYRDDILLFNPGSTTIPRNGARASYGLITDTECQVRAIDNDELLLSCPIRHTR
>NC_009901.1|WP_012157250.1|4934083_4937242_-|efflux-RND-transporter-permease-subunit
MARFFIDRPIFAWVIAIIVMLAGVLSIVGLPVSQYPSIAPPSVVISAVYPGASAKTMEDSVTQVIEQRMTGIDHLRYITSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQLAMPLLPQEVQAQGVNVSKSSAGFLMVAAFVSQDGSLDKNDIADYVGSNIQDPLSRVPGVGTIELFGAQYAMRIWLDPLKLTQYNLTSQDIISSIREQNAQVSAGQLGGAPSVAGQELNATVSAQSRLQTADQFKKIIIKADTSGAKVFLEDVARVELGAESYAVESFYNGKAAAGVGIQLATGANALATAEGVRAKINEMKPFFPDGMEVVYPYDTTPFVEKSIEGVVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMQEEGLSPVEATKKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVMVAIILTPALCATMLKPIAKGESHAKTGFFGWFNRKFDALTSRYESSVAAMIKRTGRTMMVYLAITVAVGWIFMRMPTAFLPDEDQGILFTQAILPVNSTQQETKAVLERVTDFYLNEEGENVKSVFSVSGFSFAGNGQNMGIAFVGLKDWAERSEPGQDVQSVANRAMGMFMGMKEAFVFAFVPPAVIELGTANGFDFYLQDKNGQGHAKLVEARNMLLGMAAQNPNLVGVRPNGQEDAPLYQVHIDHGKLRALGVDIDSVNSVLGTAWGGNYVNDFIDRGRVKKVYVQGEAEYRMQPEDLDSWYVRNDKGEMVPFSAFASGSWQYGSPRLERFGGLPAMNIQGGTAPGYSTGAAMDDIEAMAKKLPPGFGIEWNGLSYEERLSGNQAPMLYALSIVVVFLVLAALYESWSVPFAVVLVVPLGIIGALIAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEFYEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGGMMSSTFMGIFFIPIFFVIVERMFSKRERDAAKAIKAEAKAAKANK
>NC_009901.1|WP_012157251.1|4937251_4938403_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MRQIVKIASVLSVALWITGCEPKPEQGPQQRGPMEVGAITVTAQPQSIMVELPGRSKAYLEAEVRPQVSGIIMTRGFTEGRDVEQGQSLYQIEPSTYEAALVSAKADLTSAEAALVSAKAKALRFAKLIKLNSISQQDFDEADAAYKEAMARVTVAKAAINTASINLEYTKVTAPISGRIGKSDVTPGALVTANQSQTLATIQQLDPINIDIAQSSAQMLRLKSQLKRGQIEAAANANVELILEDGTPYSHTGVLQFAEVTVNENTGSVIIRAEFPNPEGVLMPGMYVRAVLNTGTDPAAILVPQKAITRNTKGEAVAMVIDDGKVAARIVTTAEVIDNQWRILDGLKVGDQLIVEGLQKIRPGAPVKAGPLVSDKKPETQQK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1403682 : 1411242

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012154414.1\|1403682_1405350_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	1.7e-39	27.6
WP_012154415.1\|1405627_1406884_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	2.2e-95	51.6
WP_012154416.1\|1407070_1407520_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_012154417.1\|1407588_1408710_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.7e-52	35.6
WP_012154418.1\|1408713_1409379_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.7e-26	30.1
WP_012154419.1\|1409516_1410620_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	7.1e-66	39.5
WP_012154420.1\|1410765_1411242_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.1e-29	45.7

DBSCAN-SWA_2

1445345 : 1455143

uncultured_Mediterranean_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012154445.1\|1445345_1445981_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.5e-36	52.4
WP_012154446.1\|1446068_1446959_+	peptidoglycan DD-metalloendopeptidase family protein	V5R8R0	Arthrobacter_phage	5.1e-06	37.3
WP_012154447.1\|1447035_1448004_+	RNA polymerase sigma factor RpoS	M4SMP8	Cyanophage	4.1e-33	32.0
WP_012154448.1\|1448116_1450696_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.2e-33	22.8
WP_012154449.1\|1451016_1452084_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	4.1e-111	61.3
WP_012154450.1\|1452515_1455143_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.3e-65	36.9

DBSCAN-SWA_3

2697673 : 2707409

Pelagibacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012155462.1\|2697673_2698501_-	glucosaminidase domain-containing protein	M1IDP9	Pelagibacter_phage	1.3e-08	37.3
WP_012155463.1\|2698663_2699575_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	6.8e-30	34.2
WP_012155464.1\|2699689_2700883_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_012155465.1\|2701153_2702440_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-95	51.7
WP_012155466.1\|2702458_2702833_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	7.1e-10	38.5
WP_012155467.1\|2702825_2704157_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.1e-76	38.0
WP_012155468.1\|2704166_2704793_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_012155469.1\|2704859_2707409_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.3e-83	49.6

DBSCAN-SWA_4

3008288 : 3016267

Shigella_phage(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086024287.1\|3008288_3009522_+\|transposase	IS3-like element ISSpe1 family transposase	U5P429	Shigella_phage	1.9e-14	26.3
WP_012155697.1\|3009621_3010560_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	A0A1W6JP29	Morganella_phage	1.6e-21	24.8
WP_012142935.1\|3010637_3010934_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	1.2e-12	38.9
WP_012155698.1\|3010938_3013326_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	3.0e-08	31.1
WP_041410956.1\|3013342_3014326_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.8e-34	44.5
WP_041410957.1\|3014770_3016267_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	2.7e-31	34.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009901

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection