CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_009943	Desulfococcus oleovorans Hxd3, complete sequence	8 crisprs	csa3,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csm6,cas6,Cas9_archaeal,cas3HD,cas3,WYL,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	0	29	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_009943_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009943_1

860153-861365

TypeIII

Consensus_repeat	Method
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	CRISPRCasFinder
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	CRT
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	PILER-CR

16 spacers

csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csm6,cas6

The CRISPR arrays of NC_009943_1

>merge|NC_009943|1|860153-861365|CRISPRCasFinder,CRT,PILER-CR
GCCGCAATCCATTCTAAAAATGGGTCTTTTCTTTCCGCCACGCCGGGAGCGCCGCACCCCAGTGCGGCACCCCCGGGTCCCAATCCCCTCTAACAGCGGGTCTCTTCCTTCGATTTACGGTATCGCCAACAGCTACGGTGAAGGGTCAAGGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCGTTTTGGCGGAACATTCACAACCGTCCTGGCCGGGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCCATGACTACAACATCAAGTAATTATGCTGAGATTCCCAAGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCGCGACACTAACAACGCGGAAATGAAGGCTGCAAAGGCCAAGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCCAGTTAGAAGAAAAGATGGCCAAGGCAGCTGAGGCTGAGGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCTTTTTATTAATCAATAAAAATGGAGGTTTGAGACATGACGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCACGGTCAGCCGATTCAGATTCAGAAGACCTCGTTCACCAGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCGATTTCCCATTCATGAGGGACAGAACGTCATCATACGTTCGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCTGGTTATCGATGGTGTTGAATATAAATTGGTAAGAAAAGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCGGACTTTCCACGAAGTACTGAACACAAAAGATTTGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCCTTACCAGGATTTATTTCAAGAGGCCTGTGTTGCATACGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCTGGGAAAATATTAAGAAAAGATCAGACTACGAACTATTTTTTGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCATTGCCGATTACCTGTCATATAACCTTACTGCGATTCAGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCAGAGCTTTGAGGTAGGCGATAAGGTCTGCTGGTGTGGGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTCTTTATATCCTTCCTTCCCTAAATACTCTCTAATGTATTTTAGTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC

>NC_009943|1|1|860153-861365|CRISPRCasFinder
GCCGCAATCCATTCTAAAAATGGGTCTTTTCTTTC	CGCCACGCCGGGAGCGCCGCACCCCAGTGCGGCACCCCCGG
GTCCCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GATTTACGGTATCGCCAACAGCTACGGTGAAGGGTCAAG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GTTTTGGCGGAACATTCACAACCGTCCTGGCCGG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	CATGACTACAACATCAAGTAATTATGCTGAGATTCCCAA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GCGACACTAACAACGCGGAAATGAAGGCTGCAAAGGCCAA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	CAGTTAGAAGAAAAGATGGCCAAGGCAGCTGAGGCTGAG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TTTTTATTAATCAATAAAAATGGAGGTTTGAGACATGAC
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	ACGGTCAGCCGATTCAGATTCAGAAGACCTCGTTCACCA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GATTTCCCATTCATGAGGGACAGAACGTCATCATACGTTC
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TGGTTATCGATGGTGTTGAATATAAATTGGTAAGAAAA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GGACTTTCCACGAAGTACTGAACACAAAAGATTT
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	CTTACCAGGATTTATTTCAAGAGGCCTGTGTTGCATAC
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TGGGAAAATATTAAGAAAAGATCAGACTACGAACTATTTTTT
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	ATTGCCGATTACCTGTCATATAACCTTACTGCGATTCA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	AGAGCTTTGAGGTAGGCGATAAGGTCTGCTGGTGTGG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TTTATATCCTTCCTTCCCTAAATACTCTCTAATGTATTTTA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC

>NC_009943|1|1|860153-861365|CRT
GCCGCAATCCATTCTAAAAATGGGTCTTTTCTTTC	CGCCACGCCGGGAGCGCCGCACCCCAGTGCGGCACCCCCGG
GTCCCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GATTTACGGTATCGCCAACAGCTACGGTGAAGGGTCAAG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GTTTTGGCGGAACATTCACAACCGTCCTGGCCGG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	CATGACTACAACATCAAGTAATTATGCTGAGATTCCCAA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GCGACACTAACAACGCGGAAATGAAGGCTGCAAAGGCCAA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	CAGTTAGAAGAAAAGATGGCCAAGGCAGCTGAGGCTGAG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TTTTTATTAATCAATAAAAATGGAGGTTTGAGACATGAC
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	ACGGTCAGCCGATTCAGATTCAGAAGACCTCGTTCACCA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GATTTCCCATTCATGAGGGACAGAACGTCATCATACGTTC
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TGGTTATCGATGGTGTTGAATATAAATTGGTAAGAAAA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GGACTTTCCACGAAGTACTGAACACAAAAGATTT
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	CTTACCAGGATTTATTTCAAGAGGCCTGTGTTGCATAC
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TGGGAAAATATTAAGAAAAGATCAGACTACGAACTATTTTTT
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	ATTGCCGATTACCTGTCATATAACCTTACTGCGATTCA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	AGAGCTTTGAGGTAGGCGATAAGGTCTGCTGGTGTGG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TTTATATCCTTCCTTCCCTAAATACTCTCTAATGTATTTTA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC

>NC_009943|1|1|860229-861365|PILER-CR
GTCCCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GATTTACGGTATCGCCAACAGCTACGGTGAAGGGTCAAG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GTTTTGGCGGAACATTCACAACCGTCCTGGCCGG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	CATGACTACAACATCAAGTAATTATGCTGAGATTCCCAA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GCGACACTAACAACGCGGAAATGAAGGCTGCAAAGGCCAA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	CAGTTAGAAGAAAAGATGGCCAAGGCAGCTGAGGCTGAG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TTTTTATTAATCAATAAAAATGGAGGTTTGAGACATGAC
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	ACGGTCAGCCGATTCAGATTCAGAAGACCTCGTTCACCA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GATTTCCCATTCATGAGGGACAGAACGTCATCATACGTTC
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TGGTTATCGATGGTGTTGAATATAAATTGGTAAGAAAA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	GGACTTTCCACGAAGTACTGAACACAAAAGATTT
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	CTTACCAGGATTTATTTCAAGAGGCCTGTGTTGCATAC
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TGGGAAAATATTAAGAAAAGATCAGACTACGAACTATTTTTT
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	ATTGCCGATTACCTGTCATATAACCTTACTGCGATTCA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	AGAGCTTTGAGGTAGGCGATAAGGTCTGCTGGTGTGG
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC	TTTATATCCTTCCTTCCCTAAATACTCTCTAATGTATTTTA
GTCGCAATCCCCTCTAACAGCGGGTCTCTTCCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009943.1\|WP_012174163.1\|854692_855736_-\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_009943.1\|WP_012174169.1\|864149_865082_-\|hypothetical-protein	csm4gr5	mkCas0089_csm4gr5_CAS-III-A:CAS-III-D	gnl\|CDD\|187794
NC_009943.1\|WP_012174171.1\|865833_866328_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NC_009943.1\|WP_012174170.1\|865084_865813_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NC_009943.1\|WP_083766515.1\|851262_851376_+\|50S-ribosomal-protein-L36	unknown	unknown	gnl\|CDD\|179039
NC_009943.1\|WP_012174165.1\|857188_858049_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012174166.1\|858101_859997_-\|DNA-helicase	unknown	unknown	gnl\|CDD\|350690
NC_009943.1\|WP_012174175.1\|871643_872561_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NC_009943.1\|WP_012174168.1\|862977_864153_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	mkCas0182_csm5gr7_CAS-III-A	gnl\|CDD\|273863
NC_009943.1\|WP_012174158.1\|851397_851781_+\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
NC_009943.1\|WP_041280788.1\|853009_854014_+\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NC_009943.1\|WP_012174176.1\|872720_873512_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|225131
NC_009943.1\|WP_041280790.1\|870438_871563_-\|TIGR02584-family-CRISPR-associated-protein	csx1	pfam09623_csx1_CAS-III	gnl\|CDD\|187872
NC_009943.1\|WP_041280335.1\|855919_857158_-\|WYL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225253
NC_009943.1\|WP_012174172.1\|866346_868884_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_009943.1\|WP_012174173.1\|868895_870002_-\|putative-CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NC_009943.1\|WP_012174162.1\|854022_854649_+\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NC_009943.1\|WP_012174159.1\|851806_852193_+\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NC_009943.1\|WP_153304347.1\|861663_862914_-\|TIGR02710-family-CRISPR-associated-protein	csx1	cd09747_csx1_CAS-III	gnl\|CDD\|378236
NC_009943.1\|WP_012174160.1\|852254_852881_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411

Protein	Function_ID	Function_description	E-value
NC_009943.1\|WP_012174163.1\|854692_855736_-\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	6.17554e-57
NC_009943.1\|WP_012174169.1\|864149_865082_-\|hypothetical-protein	gnl\|CDD\|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.16759e-16
NC_009943.1\|WP_012174171.1\|865833_866328_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	3.743e-31
NC_009943.1\|WP_012174170.1\|865084_865813_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.7385e-79
NC_009943.1\|WP_012174168.1\|862977_864153_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|273863	TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP protein Csm5. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm5, for CRISPR/cas Subtype Mtube, protein 5.	2.6803e-11
NC_009943.1\|WP_012174166.1\|858101_859997_-\|DNA-helicase	gnl\|CDD\|350690	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. UvrD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	9.06366e-08
NC_009943.1\|WP_012174175.1\|871643_872561_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	2.12821e-15
NC_009943.1\|WP_012174158.1\|851397_851781_+\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	2.10887e-75
NC_009943.1\|WP_041280788.1\|853009_854014_+\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	9.60949e-176
NC_009943.1\|WP_012174176.1\|872720_873512_-\|4Fe-4S-binding-protein	gnl\|CDD\|225131	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion].	4.96365e-26
NC_009943.1\|WP_041280790.1\|870438_871563_-\|TIGR02584-family-CRISPR-associated-protein	gnl\|CDD\|187872	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as NE0113 family.	1.20587e-98
NC_009943.1\|WP_041280335.1\|855919_857158_-\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	2.65587e-05
NC_009943.1\|WP_012174172.1\|866346_868884_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	6.81608e-129
NC_009943.1\|WP_012174173.1\|868895_870002_-\|putative-CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	1.80715e-64
NC_009943.1\|WP_083766515.1\|851262_851376_+\|50S-ribosomal-protein-L36	gnl\|CDD\|179039	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed.	9.40363e-10
NC_009943.1\|WP_012174162.1\|854022_854649_+\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	7.69721e-63
NC_009943.1\|WP_012174159.1\|851806_852193_+\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.06002e-87
NC_009943.1\|WP_153304347.1\|861663_862914_-\|TIGR02710-family-CRISPR-associated-protein	gnl\|CDD\|378236	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710). Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).	7.33868e-162
NC_009943.1\|WP_012174160.1\|852254_852881_+\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	5.26788e-115

>NC_009943.1|WP_012174166.1|858101_859997_-|DNA-helicase
MPRRVSPPVNELDSLPHPLTSGERRVFDFFNARLAPEWEIYVQPHLNGLRPDFVLLHPRIGVAVFEVKDWSLNDAAYQVQKREDGTPVLMVNDHGEWRAIEQANPVEKILHYKQEIFDLYCPRLDQRAGRAVMTAGLIFPSTGDRRVREFFEPWLRRHREIVQYPGRHPVTGMEAIDGGRIDQVFPEHNRGLSKIMNETLARDLRSWLVEPDFALAQREPLDMDKNQNNLVTSRTDTGYRRIKGPAGSGKSLVLAARAVELANEGKDVLVVNYTITLPHYLRDLAARCHRNGEGRGSITWLNFHAWCKRVCIQAGFKKEYDNLFAEIRSAERREPDKKNNGLKEIMDHRIPDLVDRIISRNLGHPDTIYDAVLLDEAQDFQLKWWNLLRKVCRQGGEKLLVADATQDIYGTARVWTEEAMHGAGFRGDWVRLATSYRLPPKAVQYAREFASRFLDPDLIDLPEKAQGELDIYPCNLKWVQTDSARAEAACLREILAMAPAADPELLAMTDITFLAPSQKSGMAVVAHLKGQYNIACVDTFDDDSQACRRKKMGFFMGDARVKATTLHSFKGWESRAMVVLINTADNHRALALVYTGLTRLKRHVRGSFLTVVSCAPELREYGASWPDFLEQ
>NC_009943.1|WP_012174165.1|857188_858049_-|hypothetical-protein
MNENRKSRADRVLTIQPGPGAASWRIAIVNASLVEDKYVNIVDLAAHICPAPPIRSFEFTDSPVYHTCISFDETTGEAVLFLRALFEKSCLRVQDPEQDCFSLRASFWLGYLTAIFRLFAVMCEKSENRIRADLNRFQSIMPNDPVTGKLLSFIGRYYNVEPPPLKKDRFLGPLVERQLAEWEAAGVPWAAAQREIMHKIGASLPQMGLFFLREYFQWTSGNLGNKDWPPIAPSFHADPAEMEAFWQDVLNLQRRQEKRDAEHKAMMRDLAVLNEFERQLAKKGWE
>NC_009943.1|WP_041280335.1|855919_857158_-|WYL-domain-containing-protein
MSFDGFDFGPENLGLFLGMAEEMAEEANERRRIIREEDRPDDPFEDEEDVVPSSRDGQKPLRPFEQYVDDICCGRRSLWGEEENAAHIPPRTRQGATEHQAERRSASAPVQMLQSELVSSRFLHVMGQILQQYQGHRIRTVSFSAKGYPRRGELPVMGVYIRKSGTVIFNLLRHFENAAQMALVIDSGFSIHGLIWHSMLRTLLHEIHHSLNLPYGGEETEEVQSTEELLAGQWCETEIHRLVHILDLEPTRLDDEPFFRTCFYELMLRESKAGNGDWVGKQRRLVDAGLIYWDEKSHAAIETMAMLYDNSANQGQQARGDAQEALVKADLRIQDRIDWELKKEQAVKEACETGAILKIDYRANDQRLVSCLIRPVSIFYKDSVTCVEALSESRQKQQTFRLDRIEALTFVA
>NC_009943.1|WP_012174163.1|854692_855736_-|sensor-domain-containing-diguanylate-cyclase
MNDEISLYQRLRENEETAKKFYEVEKKILSILRFKDLFDALLAEIKGQFNLPYVWLSIIENSEAHHLIESIDDMDPELKASINIIDRSAFFALIGQQTEPILANDGLKPFFKLLPADRHYLVKSMAIAPIMMDGEIVGSLNQGDAAQDRFEPGMDTSLLEQLATKVSLCLSNVAAHEKLKFLAYHDPLTGLLNRRVMETALARETARAGRYNLPLSVVFLDLDYFKKVNDTHGHETGDALLKHLADQLVHQCRGTDIVARFAGDEFVIILPETDADHATALMHRIQEHLAASPLVCGETPIPVVITFGVASTMDPDPPKDDPAALLKKADERLYEKKAARQNKEGRA
>NC_009943.1|WP_012174162.1|854022_854649_+|50S-ribosomal-protein-L17
MRHRKSGVKLGRTGSHRNAMFRNMVTSLLKHEKIQTTDAKAKELRRWADHVITLAKRGDLHARRQVMAIVREKNVVHKLFAEAAERFGSREGGYTRLTKIGARPGDAAPVTLIELVSLTETTEKKKKKPAKTAAKPAPTPSAPAVEKEAAADTPAPAAEESAPAKAAEPEAEAAAPEAEAAPEEPEVPAADTPVEDDGASEEAPPKTE
>NC_009943.1|WP_041280788.1|853009_854014_+|DNA-directed-RNA-polymerase-subunit-alpha
MYMNWQEMIQPDKIQVEAATPFYGKFICEPLGRGFGITIGNALRRIIISSLHGAAITSVKIDNVMHEYSTVEGVLEDVSEIILNLKEVRLKTSTAAAKTIRIDAAGPGVVTAGDIASPDGRVEILNPESHIATLSEGATLKMEMTVKVGRGYALAEANKDEETPVNTIPIDAMFSPIRRVNYVVGNSRVKQKTDFDKLTLEVWTDGSVLPEDAVAFAAKIMKEQMNVFINFDESAEPEHAGRKDDSGGKVFNENLYRSVNELELSVRSSNCLKNAEIDKLYQLVQKTESEMLKTKNFGRKSLNEIKELLAEMGLSLGMDLEGFVPPAEDNKEGE
>NC_009943.1|WP_012174160.1|852254_852881_+|30S-ribosomal-protein-S4
MGRYRESVCRLCRRENLKLFLKGDRCFSDKCAFDRRGYPPGEHGQLRPKFSGYGIQLREKQKVKRMYGLSEGQFRRVFAEADRRKGITGSTLLVLLESRLDNAVYRLGFVNSRTQGRQLIRHNHFLVNGKNVDIPSYVLSPGDVIEVREKSRNMQVIDESLAAVERRGVPQWLSLEKENKRGVVKNLPVREDITIPIQEQLIVELYSK
>NC_009943.1|WP_012174159.1|851806_852193_+|30S-ribosomal-protein-S11
MAKRVQTKKKVRKNIASGVVHIQSTFNNTIVTVTDVAGNVISWSSAGGRGFKGSRKSTPFAAQMASEDAVKKAMAQGLQTVEVYVKGPGPGRESALRALQAAGLTVTMIRDVTPIPHNGCRPPKRRRV
>NC_009943.1|WP_012174158.1|851397_851781_+|30S-ribosomal-protein-S13
MARIAGVDLPKRKRVEIGLTYIYGIGRSTSRQILNKLSIDYDTKVDQLTETEINAIRNAVTNEHKVEGELRTEVSMNIKRLMDLGCYRGLRHRKSLPCHGQRTSTNARTRKGPKRTAVKKKGAAKKK
>NC_009943.1|WP_083766515.1|851262_851376_+|50S-ribosomal-protein-L36
MKVRASVKKICRNCKVVRRKGVIRVICVNKRHNQRQG
>NC_009943.1|WP_153304347.1|861663_862914_-|TIGR02710-family-CRISPR-associated-protein
MNKPNSDGAAGAMIVSVGGTPAPVIESIRHFRPVFVSFFASQETLDKVMEIKGAIKAAGLELQSEVTLAENVNDLLHCHKKAEEAVARVIGRGHSRDSVIVDYTGGTKNMSVALSLAAITHGFSFSYVGGTRRTRGNVGTVENGAEKVFQSVNPWDFLAVEERKKIALLFNRHQFKAAGQLCADLAEKNVNRRLVYKKIGLMIEGFHEWDLLRHKTAVRRFEKCEIDELLDDENKGVQAFAKAAKALLPFLADAAGCGEKPCPAYILDLFANAERRFDEGKTDDAVLRLYRIVEMAGQQRLMDTNGIDTSNAAPEKLPAGLKSIYEEKYMDPESKTIKISMAAGYSLLKEMGDDLGLQFYDQKDSFLKIQDSRNHSFLAHGFRSAREAAYMSLRDFIVSLNIFQVSDVPRFPVVVF
>NC_009943.1|WP_012174168.1|862977_864153_-|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTTYHFKAQALTPIHIGCGCEIDPTEFLIKDETLVQFNTARVIKDLSPEEKTRFAAFADRADLKEMQNFLGHHLDIQRHAMNTIDASDAFIKEYTAKASNPNNRFIVSMMPRNPHTGSVYVPGSSIKGAIRTAVVNYFANIDANTRPSVHQKVQAERDIKKKCVALEETALNCRKSETHKDVFRLIHVSDAELPDNSTRIDWAENSGAKGIQMWVERVQSKADAATPPEFTVSIRLDSKAMKRPGVKENLGRELNIDLIMDACNRFYWARMIDEAARFDNKEADDTSWKAIEKLFPLGQLDNGQTISINPSVDVWDHREYVNRRMLIRVGHFSHFESLSVDELRQGWHAKKREPITQGSTRTRCTMENGQPAMPFGWLILTLDQEQGVSRY
>NC_009943.1|WP_012174169.1|864149_865082_-|hypothetical-protein
MAYFRIIITPSGPLTTEWVSGTIWGHMAWAIRYLEGESALAQWMREQESSPWLFSSRIPENMLPLPLLPPAAKKGGKPSLEAFSLSKNVAKTAYIPERLFLSLRDQLNEPALLEGLKKITPENHSGLESGHLFHNCIDRNSGRTPDAGGLFVENIKWPGENQRFQIFAAADPACRKRLESSLAFIGQSGFGANASTGRGSFSFEIKEETALFAGTGNRAMSLSHGVITPAMQNPRYKLHTHYGKLGGHFATGGRSPFKYPILMARPGATFDPAGDPPFGKLLGKVHHDESLGFIRHYAFHLPTYFTEVTP
>NC_009943.1|WP_012174170.1|865084_865813_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MKLTTSYLITGQIEILTGLHIGAGKDAVEIGGVDNPVVKNPYTGEPYIPGSSLKGKLRCLMEWVTGCVEDSGKTWEGGGETGPDKLAADPILRIFGTTSKNWDAGPTRLIVRDACLNKEWKERIIDRGLPLTEEKFENNIDRIQGKAGPGIRKTERVPAGSLFDFEMVYRIFDTNDEGRTDVDNLDNLFAIMRLLEQDALGGSGSRGYGRIRFDKLKKDGQDIQAKFESIDVSKLIKQQKVA
>NC_009943.1|WP_012174171.1|865833_866328_-|type-III-A-CRISPR-associated-protein-Csm2
MVQPNRHSGYKPHGQQGAGRPTYGSQSPPPQLPTPKPLSYYSDEKKKRLKPELLDDQARTDAENFKGLKATQMRRFYDDLKAIERKIMSGDLQEQQANFERDRALIVMFKAKAVYAEKRKVAPRAFTQFIFDHVASIKDLADFKGFLKVFEAVVAFHKFYSPEK
>NC_009943.1|WP_012174172.1|866346_868884_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MAYSIYEVIFGALLHDVGKMCQRAYGSMKAVPWVTYDMESTLCPKNKHQAYTHKHVLFTNAFFDWIEQRKISFPDGTVLKHVADAASFHHAPDKAPEKAMAWMIALADRYSSGMDRREKDEEEEETSSRETYRRLPLQSVFDEIVIDPKRPAPTKNAYTLSVLNPHAPAALIPLPWTGESPSLPENYKAVTELWIQEFQKIKDMPELSPRLFEEVLLGLLERHTWAIPSSTMDIPDISLFDHSRTTAAIAACLYRYHEEKGELENPEAVKNESLPKFQFIAGDLSGLQSTLFTLESQGVKGVSKILRARSFMLSAITEAAALETLETFSLPLSCIIQQAGGRFLILAPVTPDMEQRMESLQRDIDQWLLENYTGSLAFHLAASPCFPGQSFKSNGLHGIMADLALAVENAKHRSLGACQQGVIKREFRYDKACSTCGVRLAEDHSEDEYRCRTCQKEFELGRRLTSANHLVWEKGETEDKNAIPVLGLHLFLLKQEPTGVRPDTAVSIRRLKPESDKAPWAWRILANHIPRFSDERDLQDPKYDGVPKEDNQYFHGMPKTFAHIGAEAKEFSHEDNDYRGKPFLGLLKADVDFLGYVFSYGLKREDQQKSRFTLSRLAQLSRMMDLYFTGYLQGVIKNDFPDTYTIYAGGDDLLLIGPWRQMHHLAKRMRESFGAYTGNNPNLTISAGLSLLHANYPVNRAVGEAEELLERAKQHDPETKDRICPYTGAPMIWPQFSQTLDSAQWIHDRMQGKQKVGTGFVYQILTLAGDAEEVAKGDVSKAGWRAKLAYHLARNVPGKKDEKARSIAEWLKRLGLDNMFHTVANEPGITGWRLPITIALYRNRK
>NC_009943.1|WP_012174173.1|868895_870002_-|putative-CRISPR-associated-protein
MKHVLVCTVGTSLKKNLAHAPDEKLKEWIGSANVQGIVSELSVIDPADRLNGAEINSITGILEKGLLDQRNALYLLVSDTEDGALTGRILKAYYENSKNPRRFDKVETVTLEGLSDRSVFDFRTKGLRNLVKAIAEIVKRHGAESVLINATGGYKAQISFAGMIGQALEIPVCYLFEKFSEVIALPPQPISLDLGFWLANASLFFDLAGDGLDKNPADADPRFAGLIDEIEVDNTRLVGLSATGQLFHEMFCFRFQQQRGRLLPPDAGIAPDAKVIKYEDSNKGRHSGLEPWLKKLCGAPYVKRIYTHYHHYSLPLKNYFRPSAKGDFCQVEGSFSDGHATTKFDIVTTAKTADQRDAVIADLSSRFV
>NC_009943.1|WP_041280790.1|870438_871563_-|TIGR02584-family-CRISPR-associated-protein
MKNIILAVTGLSPQVITETLYVLHQSGREVHAIHVITTREGKDRIFSDLLAGEDGRYHRYLNEYGINPETIAFDHTHVHVVADTHGVERPDILTEADNERLLALCLGMAFELTKDPDTAVFFSIAGGRKTMSACLTLAAQFYGRPQDRLYHVLVSPDFESSREFFYPPKESKTIALKAKNGQAYYKDTRYAEINLISVPFVSIRDSLSKDVLKASKPPGALLLSLIREETPRLTVNLVDKKIIYKRMELDLTPAQMALYAFFAMRKKDCRKNSITCGDCHECFLDLPAILNQGLVIADIYKRLCGTRPVEEMSKTGIMNLDAERFNSLKSKIKAVLQNRFGPYALKELEIASKGRRPDTRYGIQMDKGKIEIVY
>NC_009943.1|WP_012174175.1|871643_872561_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MLYGDYSFSCVFETPARLPFYKGSALRGIFGRSLKKTVCALRRQQCDTCLLNTTCLYAIVFETPASAKTSEAPHPFVLEPPPAQETDFAAGDTLNFSLLLFGSVNNSLPYFIYTVDKMGAIGIGARIDGRRGRFALVEVKAGRKTVYRAEDGRVKTPAPVETLALSAEAGSSRTSRLHLTMETPLRTKMQNRLTADLPFHALVRVMLRRVSSLMTHYGQGEPPLDYKGMVKRAMDVKIVENNLQWFDWRRYSFRQDNEMLMGGITGSVVYEGELDEFLPLVRFCEKTHVGKQTTFGLGRIKATTV
>NC_009943.1|WP_012174176.1|872720_873512_-|4Fe-4S-binding-protein
MKWTDEAEAAIKKVPFFVRKKVRARVESEAAARGRQKVTINEVNTTRKRFLENMSAEVKGYQLDSCFSQGSCPNMANSTGRLAERIEALLKKEDLAGFLRRTVGGNIKFHHEFRVTLAECPNACSQPQIKDIGIVGACLPEITDADCTLCGACVAACRDPAVCLDEANTRPVIDPGLCLACGACAKACPTGTITEGQKGYRILLGGKLGRHPKLARPLDGIFSEDQVIDIIRRCITFYKANSKKGARFADIYTGPKDIGLSQP

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Crispr_ID: NC_009943_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009943_2

1941745-1941846

Orphan

Consensus_repeat	Method
CAGAAACAATGCCCTTACGGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009943_2

>merge|NC_009943|2|1941745-1941846|CRISPRCasFinder
CAGAAACAATGCCCTTACGGGCACCAGGGCCGCAGACGGCCCGTTTGTAGTGACGCCGTCAGGCGTTTAACGACCGATCAGAAACAATGCCCTTACGGGCAC

>NC_009943|2|2|1941745-1941846|CRISPRCasFinder
CAGAAACAATGCCCTTACGGGCAC	CAGGGCCGCAGACGGCCCGTTTGTAGTGACGCCGTCAGGCGTTTAACGACCGAT
CAGAAACAATGCCCTTACGGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009943.1\|WP_012175062.1\|1950312_1951350_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NC_009943.1\|WP_012175060.1\|1948265_1949486_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|366370
NC_009943.1\|WP_012175058.1\|1946302_1947244_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|223803
NC_009943.1\|WP_012175043.1\|1929340_1929904_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_167320862.1\|1935840_1936815_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_009943.1\|WP_041280975.1\|1939953_1940721_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NC_009943.1\|WP_012175045.1\|1931978_1932851_+\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NC_009943.1\|WP_012175047.1\|1933713_1935690_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|182528
NC_009943.1\|WP_012175057.1\|1945898_1946306_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012175046.1\|1932915_1933470_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_041280443.1\|1944100_1944634_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|367425
NC_009943.1\|WP_012175054.1\|1942688_1944080_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|290183
NC_009943.1\|WP_012175053.1\|1941930_1942458_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350236
NC_009943.1\|WP_012175052.1\|1940723_1941641_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NC_009943.1\|WP_012175050.1\|1938385_1939810_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320692
NC_009943.1\|WP_012175049.1\|1936801_1938118_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NC_009943.1\|WP_012175056.1\|1945026_1945896_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NC_009943.1\|WP_012175044.1\|1930386_1931868_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237668
NC_009943.1\|WP_012175061.1\|1949516_1950281_+\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
NC_009943.1\|WP_012175059.1\|1947264_1948197_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809

Protein	Function_ID	Function_description	E-value
NC_009943.1\|WP_012175062.1\|1950312_1951350_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	1.71655e-43
NC_009943.1\|WP_012175060.1\|1948265_1949486_+\|mechanosensitive-ion-channel	gnl\|CDD\|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	6.96956e-28
NC_009943.1\|WP_012175058.1\|1946302_1947244_+\|radical-SAM-protein	gnl\|CDD\|223803	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion].	7.58436e-64
NC_009943.1\|WP_167320862.1\|1935840_1936815_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.63923e-27
NC_009943.1\|WP_041280975.1\|1939953_1940721_+\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	2.03022e-89
NC_009943.1\|WP_012175045.1\|1931978_1932851_+\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	1.36711e-14
NC_009943.1\|WP_012175047.1\|1933713_1935690_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	6.52452e-169
NC_009943.1\|WP_012175059.1\|1947264_1948197_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.37808e-07
NC_009943.1\|WP_041280443.1\|1944100_1944634_-\|cytochrome-c	gnl\|CDD\|367425	pfam03264, Cytochrom_NNT, NapC/NirT cytochrome c family, N-terminal region. Within the NapC/NirT family of cytochrome c proteins, some members, such as NapC and NirT, bind four haem groups, while others, such as TorC, bind five haems. This family aligns the common N-terminal region that contains four haem-binding C-X(2)-CH motifs.	6.82497e-52
NC_009943.1\|WP_012175054.1\|1942688_1944080_-\|hypothetical-protein	gnl\|CDD\|290183	pfam13447, Multi-haem_cyto, Seven times multi-haem cytochrome CxxCH. This domain carries up to seven CxxCH repeated sequence motifs, characteristic of multi-haem cytochromes.	7.76798e-28
NC_009943.1\|WP_012175053.1\|1941930_1942458_+\|hypothetical-protein	gnl\|CDD\|350236	cd10912, PIN_YacP-like, PIN_domain of Bacillus subtilis YacP/Rae1 and related proteins. Bacillus subtilis YacP, also known as Rae1, is an endoribonuclease involved in ribosome-dependent mRNA decay. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. PIN domains were originally named for their sequence similarity to the N-terminal domain of an annotated pili biogenesis protein, PilT, a domain fusion between a PIN-domain and a PilT ATPase domain. The structural properties of the PIN domain indicate its putative active center, consisting of invariant acidic amino acid residues (putative metal-binding residues), is geometrically similar in the active center of structure-specific 5' nucleases (also known as Flap endonuclease-1-like), PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	3.9392e-30
NC_009943.1\|WP_012175052.1\|1940723_1941641_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	9.29437e-79
NC_009943.1\|WP_012175050.1\|1938385_1939810_-\|M48-family-metalloprotease	gnl\|CDD\|320692	cd07333, M48C_bepA_like, Peptidase M48C Ste24p bepA-like, integral membrane protein. This family contains peptidase M48C Ste24p protease bepA (formerly yfgC)-like proteins considered to be putative metallopeptidases, containing a zinc-binding motif, HEXXH, and a COOH-terminal ER retrieval signal (KKXX). They proteolytically remove the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and golgi, binding one zinc ion per subunit. In eukaryotes, Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification (C is cysteine; A is usually aliphatic; X is one of several amino acids) is complete. Mutation studies have shown that the HEXXH protease motif, which is extracellular but adjacent to a transmembrane domain and therefore close to the membrane surface, is critical for Ste24p activity. Several members of this family also contain tetratricopeptide (TPR) repeat motifs, which are involved in a variety of functions including protein-protein interactions. BepA has been shown to possess protease activity and is responsible for the degradation of incorrectly folded LptD, an essential outer-membrane protein (OMP) involved in OM transport and assembly of lipopolysaccharide. Overexpression of the bepA protease causes abnormal biofilm architecture.	6.3432e-82
NC_009943.1\|WP_012175049.1\|1936801_1938118_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	3.25815e-42
NC_009943.1\|WP_012175056.1\|1945026_1945896_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	1.27853e-103
NC_009943.1\|WP_012175044.1\|1930386_1931868_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237668	PRK14301, PRK14301, chaperone protein DnaJ; Provisional.	3.0149e-07
NC_009943.1\|WP_012175061.1\|1949516_1950281_+\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	1.1167e-36

>NC_009943.1|WP_012175052.1|1940723_1941641_+|ParB/RepB/Spo0J-family-partition-protein
MKKKGPVKKNKEQPREPKKKRALGRGLDALFPEMSRADAAGGDYFYCDLDVISSNRFQPRSRFSEEELAALAESIKKEGVIQPVIVRKTDTGYELVAGERRLRAARLAGLSQVPVVVRDISDQQHLVYSIVENVQREDLNPLEEAQGYHMLVNTFGFSQEEVAAAVGKNRSTVANMLRLRNLPDPIKERITDGSISTGHARALLAAKTPQQQNTIFQAILAKGLSVRQAEAMVKAPDKAGSSSSAGPLKKPAPADAAHFADMTESLARIFGTRVRIQRKGKRGKIEIEFYSDADLDRVLELLLNI
>NC_009943.1|WP_041280975.1|1939953_1940721_+|ParA-family-protein
MSQTICIANQKGGVGKTTTSVNLAAALASLARKVLLVDCDPQANATTGVGVDKAGLEKTLYHVLIGDTPAARAVIQTPVKNLSILPSRVELSGFEVEMVDEPGKEKLLAAVLAPVRNDYDYVILDCPPSLTLLTINAMAAADSILIPLQSEFYALEGLGQLLQTVRRIKQSLNPPLKIAGILLTMFDQRTNLSNQVTEDAENHFADLVFKTRIPRNVRLGEAPSFGLPILLYDPASAGSKSYMALARELIKRDQG
>NC_009943.1|WP_012175050.1|1938385_1939810_-|M48-family-metalloprotease
MPFYKKFLAIMCLAAYLAGLLTAPSAHALTLGEEEELGKEFFKYVQHRYRFIEDPFARHYIEALGKRLAAVFPDPMFEYRFFIIEDETYNAFAAPAGYVFVNTGLIKAMNSEAELAGILTHEIAHVYCRHISEKIEKSKKIGLATLAGIAAGIFLGAGGAVPGDAVMIGSAAAGQAAALAYSRADERQADQIGVTYLCEAGYSARGLMEILQKIKSKQWFSDKEFPTYLSTHPGTDERLMYIDTLMNSPEFARCGQKSAADEAAFAVIKTKMEALCPGDSAAIRHFTALVEQNPADPSARYGLGLALLQNNRPADAIAHLEKVAEKSPFHPHALTDLGKAHYFTGAYEKALSILERVPPTDFYNTERYFYTAMAAEKLGLHDKSITLYKRIIQQEPRYLPALYELGKVAGEQGNLDDAHFYLGIYHNNRREADTALFHLNKALELTKDEKRKEQIEKMLADIQAFLKEQRRSMR
>NC_009943.1|WP_012175049.1|1936801_1938118_-|TolC-family-protein
MKYLFRIQQLTRRLPVLFALAAAVLFATILPCGHSSAAETLTWQDCVQEALARHPELAVSRESLNQALADRDIAKSPGRPQVAANASSSRGDRDDAAATTSHSFGISARQMLYDGKKTTHQVSAAEAAVTSRQYTHDVTSSRIRLQLRTAFVDLLHARELLNISEEIARRRRQNLELVRLRHDAGREHRGSLLSARANVAQAEYEIRSARREVSLAMWRLARELGRDGTASVTVAGELSVPPADAGMPDFEALTADNPFLKELIAQKEVSLASRDAVKSGFFPQVYADASAGRSDSDWPPDRDQWSVGLSVSVPLFEGGSRFAEMRKAGARVRQAEAQATSGRAETLHTLRDAWIAFQNAVDRVAVGRAFVEASEERAKIAQVEYSNGLITFDTWAIIEDDLERDRKNYLTFLANALVAEAYWVQAKGVTLEHDLEKN
>NC_009943.1|WP_167320862.1|1935840_1936815_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MKKTNILLLILSVMATAGGAWYFFYSPATKPAKDFVLEEILPEVGTIAVTISTTGVVKPKNRLEIKPAINGRIEEIRVREGDHVKQGQVVARMSSTERAALLDAALGQGESMDYWQDVYKATPLMSPIDGEVIVRAVEPGQTVTTQDAVIVLSDRLIVGAQMDETDIGMVRPGQKAVISLDAYPNSAVAGVVDHIAYESTVVNNVTVYEVDILPGTLPDFFRSGMSANVDVTVKEQENALLVPVDALIEENGEKKLLVKPAGANTPVETVVSTGLANTEQVAITSGIDPDTVVVIRRQHYELPAGQTGGNPFSPFGSRKKPQGK
>NC_009943.1|WP_012175047.1|1933713_1935690_-|ATP-binding-cassette-domain-containing-protein
MNTPTAVEKSHEILRLENLCRVYRSGDIEVHALRDISLTIEAGEFIAIMGPSGSGKSTLLHTLGLLDRPDSGTYTLFGRDTTKMDDDTLATLRNHLAGFVFQQFHLLQRSSALDNVALPLVYAGRRQKKDRAEKRLAEVGLSHRSGHRPGELSGGEQQRVAIARALVNNPAVIFADEPTGNLDTKSEADIMAVLKDLNRRGKTIIMVTHEKEVAEHAGRIILMRDGKIVSDEKKAAPVPGDPPPAPDLPDRGAGRIAFTDHLRQAFASVFSHKMRSFLSILGILIGVAAVIAMLALGRGAKSSIEESLKSLGSNLLAIRPGTSIMRGVHTAGGDTAQFTDADVTAVAKLPSIRYSTGMVGGAGQIVFQNKNWSTRVEGVGYDYGVMRASLPVVGRWFTKDELRRRAKVLLVGTTVARELFGETSPIGKTVKFNRINFTVIGVLPPKGSNAWRDNDDVVLMPVTTAMYRVLGKTHLDFMYAEALNQELMATAEQEVGSLLRTRQRLSRGQDDTFTIRNLSDIQETLTATTRTMGILLGAIAAISLLVGGIGIMNIMLVSVTERTREIGLRMAIGARSRDILMQFLIESVVMTFWGGLLGTLMGVGTAMALSHFAGWTTLVGPDSILLATVFSVAVGIGFGLWPARKAAHLNPVEALRYE
>NC_009943.1|WP_012175046.1|1932915_1933470_+|hypothetical-protein
MNQFDLIERFRSILPIVEKWIEDTLEKHNADARPVISLPFSRLKAIFPPDLLNKAKSVVVKGMVPFPPLSRMGLPELSSMENMPMVGVTYKDTFFVNHLYQSESLHFHEMVHVVQWERLGIENFLLAYGYGLIQFGYQGSSLEKMAYSLQAKFDNGELPGDIVSIIQQETDAIWDKVYKFIATV
>NC_009943.1|WP_012175045.1|1931978_1932851_+|toll/interleukin-1-receptor-domain-containing-protein
MKKVDGNWTGRITGTNNANVFVEIKQDGSKLYGISRINDPQYGTSVYNFTGVIEENIVILSMVPDNKFINKQETQEVIINGRKMTITANMVRYGNVSVKAKLVNNSTIEGKWQSTIGTGGNLFLINEKEKSAAPQETSTTGKKNTVFISYSHEDQKHLKRLHVHIKPLEKKGLVDVWDDTKLIAGDKWREQITSALSKAAIAVLIISADFLASDFIVDNELPPILKKAELEGTLVLPVILKPCRFLREDTLSRFQALNPPDKPILSMPEVEQEIMWDKLSQRIEIELNRS
>NC_009943.1|WP_012175044.1|1930386_1931868_+|molecular-chaperone-DnaJ
MAKILNIFEAAILLKMSPLLLKWFISYSPKYKEKRKLSYADHKDEMYFFDKHELLNFNKYLSMPWPAKKEDQRPIVPSGIENEIKSECKFRCVICNHASGHIAHIDPIHNSKNNHPHNLIYLCPNCHDLYDNKKTISKNQIANLKKNLLHTKIVIWKSYLFLIDSVSSLIKELKIVKHEDFTNKELKKETISELLHEIRKHASEEFDTHPSDIKENGTEKIFEGYRKRVREIIDENIDVEEKLFAERDTYILETGKAECPLCNGTGVHNAWECPVCRGVGTVDQEAVNEIDLTPFKQDECPLCEGSGTHNAWECPVCRGVGTVDQGAVNEVDLTPFKQEECPLCEGSGTHNAWECPVCRGVGTVDQEAVNEIDLTPFKQDECPLCEGSGTHNAWECPVCRGVGTVDQGAVNEIDLTPFKQDECPLCEGSGTHNAWECPVCRGVGTVDQEAVDEIDLTLFEQVDCPECNGTGVDNEWECRACRGIGTTDRRNLE
>NC_009943.1|WP_012175043.1|1929340_1929904_+|hypothetical-protein
MTVQVKGVFLIDLVKQVRAQKDKNWTDYLTADDMAIINSQVLLSSWYPEDFFFRLCMANFKVIGQSNLETCFAYGQLNAHNLAEVYKISMIVQNDPAETIQRLVTRRQAMFTTDYQGAEKITVVKEGNRATIHSFMDPQKQDAELADVIHHSLLGIVHELAVMVGGSNVRSEISRDGDVYKLTVMWD
>NC_009943.1|WP_012175053.1|1941930_1942458_+|hypothetical-protein
MSLHIIIDGYNLIRQSPVLSRIEQENLQAGREALVASLVSYKRIKAHTITVVFDGTDAPSYYSHRDRVGGIDVRFSGPGQTADSVIRKMAAEKREKALVVSSDRGITDFAQSAGAAIIASREFEDRMAQAMMMDAAGMAEEDGAFSPWSGTTKKKGPGHRLSKKQRKSRTKAEKL
>NC_009943.1|WP_012175054.1|1942688_1944080_-|hypothetical-protein
MKTTVKWFAVAVVCLLAGTAWAADGSADMSKEKEFRIERSISEAGIACIQCHKREHPGLFADWANSRHANANITCIDCHQAQEHDADVSKAHYTQYENSKDPWAQKKYRVPVSAVVTPKDCSRCHPNEAEQYAKSKHANTIEIIWKIDPWLNDGMNSDLERTSGCFYCHGTVLEKDRDGNLTPETWPNVGVGRINLDGSKGSCTSCHTRHRFSLMEARKPEACGQCHLGPDHPQIEIYTESKHGAMYAAFADEYNWTAAPGTWSPGVDFRSPTCASCHMSGAGAVRTTHDVTERLSWELQAPLTVRPEDFAAFPAKTNWQQEREKMQAICMQCHGKTWVVDHYEKTDKVVNEYNEVYFKPAKAMLDSLYEKGLLDKSRFFDEALEVEYYELWHHEGRRARMGTAMMAPDYAWWHGFYECKNRYNRFMEEARHLIETGQKAYKYPDFPNATGSTEKPKAVFPKQ
>NC_009943.1|WP_041280443.1|1944100_1944634_-|cytochrome-c
MKKHIKGLILIGVGVLLGFPVFSMTYYTMVRTSTPEFCASCHEIQPAVDAWRTSTHVNNAQGFVADCMDCHLPAPHNTADFFYTKTLHGLKDVIAHFVMDEYDREENREKAYASFKNDQCMKCHRNILYIPDKRGAMLAHRDVVNALPGREKRCVDCHRDLVHNTVEFYQYKQFKKL
>NC_009943.1|WP_012175056.1|1945026_1945896_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MTSPRTILSGHDIAPKKSLGQNFLCDPQAAEMIVRKCGLSKADVVVEVGPGTGALTIPAAGQAAWVYAIETDGRLIEPLKETVRAAGLDNVTVLHRDIMKTDIREICREAGRKLVVLGNLPYYISSQILMDLVEKREAVDRAVLMFQQELARRIAAPPGNREYGRISVALRYCAELSTVARLKPNLFFPRPGVDSEVVRIVFRPWPGNRDCDEALFFAMIKSAFATRRKTIKNALSAGMTKISPSAWEELLVRADVAPTVRAETLDVGDFLNICRHYKAMSGNISTKEA
>NC_009943.1|WP_012175057.1|1945898_1946306_+|hypothetical-protein
METAELTQFIDQWRTDGAGTRDAFITFKGHLENMPDAVLSFKARPGISYSLRAARPGQQRELFVMVDVIDDDPDNRWLSVCFYGEMITDPDELGDLIPGGLLGEDGHCFDLNESDDAMAAYLQKRMDEAYQAAVA
>NC_009943.1|WP_012175058.1|1946302_1947244_+|radical-SAM-protein
MTDKSSNASFIYGPVPSRRLGRSLGVDLIPLKLCTYDCIYCQLGKSSSKTVKRLPYRDADTVLAQLFERLEKIDRPDCITIAGSGEPTLNSDIGAVIAGIKQKTDIPVVVLTNGSLLSDPEVQSDLLAADMVIPSLDAWNPEMFASINRPYRTVDFTTMTEGLVSFSKAYGGQLWLEIFIMDGINASVDDARAFKPLVDRINPAVVYVNTAVRPPEESFVKQASPAMIENFYRTLGRAHQKDVVFDGTGPAEGSGNVATDIVEMVARRPVTATDIAAGLNLPEAAVRPHIEQLVAEGRLEAVPKGDRVYFRTP
>NC_009943.1|WP_012175059.1|1947264_1948197_+|tetratricopeptide-repeat-protein
MRFALIPVLALMLATGACAGKKAEVNLGDESVTAARNTVQKAVADYSAGCNELALRELNRAHELFTLADDVAGVAMCMNNMGTVYRAADDPVSAAAFFDEAFSLYQGLGDRQGALQALANKATVLTETGDYDGAGAVLDRADALAPDLAKNFLPLLNNRGVLLAKQGALEEAEAVLRKALGGTTQDTLSGHATVNASLGNLMQQQDRYAEALAFFQSALEADTRLAYYRGMADDLAAMAECGAALGNNDQAVEWLKRSIKITALTGDTIRAHNRFETLVALAEKEQTDITIFSHLVKQWLKGDRVRSYCR
>NC_009943.1|WP_012175060.1|1948265_1949486_+|mechanosensitive-ion-channel
MESLLHVLTDSTGLSALGTGAVLLLAGVLAYYVARLVLIRVIHRLARKTQFQWDDVLVEMGVFSALAFFAPAVVVSYGVRIFPEFDQTLVHNGLTVYLTIVTLGLISRTLNAGLAIYEQFPVSVRRPLKGYVQLVKIFVFIIGVVVALALLLGMSPWKLVSGIGAMTAVIMLIFKDTILSFVASIQIAGNDLFRKGDWIEMSAMGADGDVIDIALHTVKVQNWDKTIVSIPTHKFLDHTFKNWRGMQEAKGRRIKRSVLIDQSSIGFLEGRVLERVKKIGLLSGYLEKKEKELAECNRDITDTDTLPLNGRRLTNIGTLRAYVRAYLEHHPKIRQDMTLLVRHLQPEADAGLPLEIYAFTSDTAWADYEAVQADIFDHILAVLPLFGLRAYQRNALVDARSSAHTE
>NC_009943.1|WP_012175061.1|1949516_1950281_+|cyclase-family-protein
MKVIDLSATIRSMPKESAAFDAVHIEYFNHAHGAAQASALLNAPASAFRNEEGWATEEITKLGTHSSTHVDAPWHYNSAIEGKPAATIDQLPLEWFFSDGVVLDMTHKSRGNPIDVADIEKGFSDIGYALKPFDIVLMRTGCDQHYGAPDYIFQGPGVTAEATVWLIDRGIRVMGIDAWGWDEPLDLQAARATEKGEKGIFWAAHQVDRAYSHIERLVNLSALPSHGFKVACFPLKIEGASAGPARVVAMVEGA
>NC_009943.1|WP_012175062.1|1950312_1951350_+|enoyl-CoA-hydratase/isomerase-family-protein
MTYRYLKTRQVNQTLWVEIHNPPVNFIITDMLAEMHHLIRKVSRDDSIRVFILTGGREDSYIMHFSIGELAALTSHLRRLMLHILVRYRLTSALLKYYMTFSNWLMDLFPWYETLMLWQARAIRGYSSGMLLWVQMTRTYFAIERMNKVTIAAINGSCNGGGTEMAACFDFRFMVGDQGFTMGQPEVLVNIVPGGGGTQRLPRLMGRARALELMLRGCQWTPQEARQAGLLTDIFDKAEFVQKVQSFADRMSKRPPVAIDAIKKSVVQGESTTLRHGLSIELEQSVRCFDTKDTEMALKNYLAYIEKNIMTLDHENATTKEIVDLLHKTLDVMENAKIFDRFEGK

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Crispr_ID: NC_009943_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009943_3

2225626-2225740

Orphan

Consensus_repeat	Method
GCGGAACTGGGTCATTCTTGGTCTGGACCCCCGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009943_3

>merge|NC_009943|3|2225626-2225740|CRISPRCasFinder
GCGGAACTGGGTCATTCTTGGTCTGGACCCCCGGGTCAAGCCCGAGGGTGACGAGGGGGGTTGGGCAATGACGGCTACGGCGGAACTGGGCCATTCTTGGTCTGGACCCCCGGGT

>NC_009943|3|3|2225626-2225740|CRISPRCasFinder
GCGGAACTGGGTCATTCTTGGTCTGGACCCCCGGGT	CAAGCCCGAGGGTGACGAGGGGGGTTGGGCAATGACGGCTACG
GCGGAACTGGGCCATTCTTGGTCTGGACCCCCGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009943.1\|WP_041280479.1\|2231972_2232209_+\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|226603
NC_009943.1\|WP_167320869.1\|2216325_2217387_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_009943.1\|WP_012175258.1\|2227180_2228383_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_009943.1\|WP_012175263.1\|2232867_2233131_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012175252.1\|2218807_2219734_-\|sulfotransferase-family-protein	unknown	unknown	gnl\|CDD\|379204
NC_009943.1\|WP_041280477.1\|2221191_2222277_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NC_009943.1\|WP_012175259.1\|2228562_2229816_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_009943.1\|WP_012175255.1\|2222632_2224990_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|377422
NC_009943.1\|WP_012175257.1\|2226452_2226860_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350320
NC_009943.1\|WP_012175256.1\|2226210_2226456_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012175246.1\|2212337_2213504_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_153304406.1\|2217436_2218597_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377422
NC_009943.1\|WP_012175248.1\|2214463_2215483_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379214
NC_009943.1\|WP_012175264.1\|2233127_2233811_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NC_009943.1\|WP_012175262.1\|2232211_2232661_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350259
NC_009943.1\|WP_153304405.1\|2215496_2216186_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|200557
NC_009943.1\|WP_167320870.1\|2230267_2231560_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379306
NC_009943.1\|WP_012175247.1\|2213496_2214456_-\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NC_009943.1\|WP_153304510.1\|2219797_2221114_-\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240533
NC_009943.1\|WP_012175265.1\|2234149_2235163_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558

Protein	Function_ID	Function_description	E-value
NC_009943.1\|WP_041280479.1\|2231972_2232209_+\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	6.80253e-11
NC_009943.1\|WP_167320869.1\|2216325_2217387_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	6.20022e-40
NC_009943.1\|WP_012175252.1\|2218807_2219734_-\|sulfotransferase-family-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	0.000250851
NC_009943.1\|WP_041280477.1\|2221191_2222277_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	2.81499e-149
NC_009943.1\|WP_012175255.1\|2222632_2224990_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	6.72989e-13
NC_009943.1\|WP_012175258.1\|2227180_2228383_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	3.89151e-38
NC_009943.1\|WP_012175259.1\|2228562_2229816_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	8.12148e-19
NC_009943.1\|WP_012175257.1\|2226452_2226860_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350320	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.67879e-60
NC_009943.1\|WP_153304406.1\|2217436_2218597_-\|hypothetical-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	0.00539072
NC_009943.1\|WP_012175248.1\|2214463_2215483_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379214	pfam13480, Acetyltransf_6, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions.	7.00627e-14
NC_009943.1\|WP_012175264.1\|2233127_2233811_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	1.17702e-09
NC_009943.1\|WP_012175262.1\|2232211_2232661_+\|PIN-domain-containing-protein	gnl\|CDD\|350259	cd18692, PIN_VapC-like, uncharacterized subfamily of the VapC-like nuclease family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.70966e-40
NC_009943.1\|WP_153304405.1\|2215496_2216186_-\|hypothetical-protein	gnl\|CDD\|200557	cd10931, CE4_u7, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily. This family corresponds to a group of uncharacterized bacterial proteins with high sequence similarity to the catalytic domain of the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups from cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily.	6.97409e-74
NC_009943.1\|WP_167320870.1\|2230267_2231560_-\|ATP-binding-protein	gnl\|CDD\|379306	pfam13635, DUF4143, Domain of unknown function (DUF4143). This domain is almost always found C-terminal to an ATPase core family.	1.75496e-27
NC_009943.1\|WP_012175247.1\|2213496_2214456_-\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	3.63389e-19
NC_009943.1\|WP_153304510.1\|2219797_2221114_-\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.2303e-48
NC_009943.1\|WP_012175265.1\|2234149_2235163_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0

>NC_009943.1|WP_012175255.1|2222632_2224990_-|tetratricopeptide-repeat-protein
MLSISRFLYLATLVFAPLAFGSVESWAFFFLTLLTGAAISFYLLHTRRHAAPIYRVPCMLPLALLGLFIFLQIIPLPQAVLSLLSPNAAQLRNETIGILLPDRAWPLTLNLHATLFELCRWLLWVGFYWISVQLLSDKAMLRRTLLFLAFFAGIFAFSSILQHIFTDNRALWFRYISVQSCSIFGSYINRNHYAGLMAMLFGPTLGLLLALRPPRQFGTMREKILGLFEEKETPLFILLLLSASIMVMSVFISLSRGGMTSLCISSLFFILMASGKKFSGRHTKMKITAAMLLCAVLMALTWVGWETIDNRFSTIYAADDIMRIGRLRYWGRCLAGGLDFLTTGVGFGAFEVAGPIYQTYYMGAILDHAHNDYLELLIEGGIPGVLLFLVFFLCLFQVVQKTLKKRKESYSILVCIGAITGIVAILLHSFTDFNLHIPANALYLAFLCGLAVAAAHTRLRNHITPPTYLPPAPNRAALVTPFLFILLWPPLLALSMGQWMADQHIQPFIKAPLNNTTAPALLEQAAESARRATAFSPWSATAHTLLGDAAFFSGNPEQALDAYQQALCFTPTRSTLLQKAGQAARNAGLPLSRAEALMAAGVKTYPMRPGAHGAHAGFLFETGNKEKAMSVVRTGIKTHPSLARQFFTLMTYAGLTPAEMFTALPANSYVLTQFAAHIQNTDYDFMRRTILTAAVNAADQEAEPSPKAYINLAHLYLREKNHDQTITVLERGVTRLPDHPYLLYLLARTYEENQIVYKALDLYKKLQIISPGYRDTEQRLKAMKR
>NC_009943.1|WP_041280477.1|2221191_2222277_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MQFIDLKSQQDRIRDRIETRIRQVLDHGQYIMGPEVQELEVKLADYTGVKHCITCASGTDALLMALMALDISPGDEVITVPYTWISTAEVIALLRAKPVFIDIQPDTFNMDPAKLEAAITSRTKAIIPVGIYGQCADMTRINIIAAKHNIPVIEDGAQSFGATHHGKKSCNLSLIGCTSFFPSKPLGCYGDGGAIFTPNDALADKLRQIRIHGQKVKHQHPLVGINGRLDTLQAAILLEKFTLFSEECHRRAEIADRYNVLLADIPGIQTPVVAANNTSVYAQYTILTDDREALSSNLKSKDIPSVAYYTAPLHLQGAFTDLGHQPGDFPISEEVAAHCLSLPMSPYLRREDQAAVVAAMK
>NC_009943.1|WP_153304510.1|2219797_2221114_-|oligosaccharide-flippase-family-protein
MHNLISDKKFSEILTGSVWALGARVSATVLALVSSVIIARFYGAEMVGVVAVVNSFLILATTFTVFGTNTSILRLIPEYLAKYSPTSAFKVYRKTQYMVIGFSLLTGTLFYFSANFIAAKIFNKPHLSIYFAIASIFIVFKSLMLLNTSAVRGLRLIRVFAMMQMLPQGFNLLLLIALGILTAQPGVPVYALLCGYALTGIFGWGIMNYTFKRRIQPGDKLHPTSTKKILAISLPMLMVATMNFFIAQTGVIMLGMFRTEAEVGYYSIAVKLSTLTSFVLSAINTISAPKFSELFHSGKIDELFYVAKKSTKLIFYATVPILFFLLIFGKLVLSILFGAEFTVAYTALLILIIGQFINSISGSIGYFMNMIGYHNQLRNILFSAAALNILFAFVLIPKIGINGAAIASMLCLVFWNISALTYIYKKYGRTTTYIPFID
>NC_009943.1|WP_012175252.1|2218807_2219734_-|sulfotransferase-family-protein
MASLLNNIPDICCTPEAEILSKLLLTGNAKDPVSEETIKIIETAMASDPKLSFWNLTLSDLDIRFGSKTSKEEMLFSILRAYGKKNKPDANVLIFKCPILNDYLKNCCKNEDLIRSDLFFLALLRDPRASFESQKRSKSLNEFVMDASPRHSAHKWVKFHNMIKNIKAFNCGYVVKYEELILNPTNTLTKICDALRLNATLKNVLVEGNSYYHSIPYNQKKLHQGLLNPFNTEKIDSWKKALNGSEIFLIEIIAKQQIKEWDYKLFSPHPNFINLMIVFCVSEFKSFLNRSISFFRKTTIKYKVLKRY
>NC_009943.1|WP_153304406.1|2217436_2218597_-|hypothetical-protein
MEFTGGASASIHSGIIRVPVILLIAFFYVRKIKSDKLTCSIVFFLLYLLILVLFSSNIFRSLSTYTKFAISLSMIPIAFYNIDTQAGLKRLHISLLIGAGILQINYVLAQMFHFGEKAYSEDGFYLGATGVTMTYIFCYAIAVAPLTYALLKKDRSKLIATVMYGFAAIVTLITFRRGSILAMMVSFLILLYLSSSKYKKTLISLLIFIGIGFWGVYHWQEQRLQNLFEQRIVYSIEREFDEKAFGRVNETKEVWYEFFNKSLSHSLFGSELFNSVEYFNYWKQTGRTIHIDYNNILHGSGLIGLILFILIFWQMIKKFKLYETTLEHPILFPQLKMVFWATVATNLVLSLSTQLWYVTSYSIFGLLIGSTLRAAKSNIAIQNNKY
>NC_009943.1|WP_167320869.1|2216325_2217387_-|glycosyltransferase-family-4-protein
MGGVANYYLSIKKHLGADYQYVYRGNVSREESGTSVPGRMVKDYVLFCRRTWSDTDVVVINSSLGVGGFFRDGLYVLLSPVHVRKVVFFHGWNLGFEKRIGASFGLKTWLNRTFLTADHIIVLSAGFKKKLRHWGYTGPISLGTTIVDEQLLEDVNFQRLSKERAENKNPTILYLGNISEAKGVRGVIQAYQLLFSRNGLKNLKCIMAGQGNMLEELKAQADSQNLDIQFPGYVREKQKTGVFKSAHVYVFPSAHGEGMPTSVLEAMAFGLPVITTRVSGISDFFEDGKMGLFLDTRDPEHIAKKIRYLLDRPELMHQMSEYNYNYAKEHFYAGKVADWFKSIIESVIHDDNE
>NC_009943.1|WP_153304405.1|2215496_2216186_-|hypothetical-protein
MAELESKYDARSTLFFLHETIPFKPLKPGTWKLSVGRYSIREPEIGKLIRQLDAGGWEIGLHGSYRSFQDQSLLATEKKILEDMLGNQVTGIRQHYLNLDEPDTWMLQRKAGFTYDTSLGRTDTSGYKDGRTAPFVDEISGMNIIPLTIMECCLFKEVENNKQNALKRAVEWMDYSQKTATFFTILWHQHMLNEKEFPGYRWVYEEILKECRRRHARFWLCRDIDESLG
>NC_009943.1|WP_012175248.1|2214463_2215483_-|GNAT-family-N-acetyltransferase
MANYDISVEGSDFKDQWDQFVLNHPLGNFFLLYDWLEIVQWKTGFEFKPLVIRSGGNLSGIMPIFLKKYIGFTICMSPPPKVASPWMGPLIAATSDNQYRIEKQNQKTVEVLHDFLVNQVGCDYIRLNCVSGLDDVRPFKWKGYQCNPVYTYFLNISDKHEVFEKFDGRIRTGIRKALQNGLTYKHVDNNMALQVIKAVSERYKEQGLSFALNRELIDRLLTSRAGDFIETTGVFDNEGFVSGNILIKLNNRVHHWIGGIQPSRNQQGANELLHWSGIERYADEGVFEYEFMGANTKHLCDHKSKYNPELRVFYSCEWHNNKGKLVDWAGNLLKRKKVD
>NC_009943.1|WP_012175247.1|2213496_2214456_-|sulfotransferase
MDKIDTKTRRLTLKVLSHISWPPGRLYQGVTIRDLVDSRTTDTGIVFIVGAPRTGTTLLYQVLTNMLDVGYLSNLSNLFYHSLFSGMVLHDKLYGDRPHNNFSSDNGRTKGWASPNESGKFWYQWYPKDVSCLTEEMLSGVDFSPMVNTIRNIQDRLKKPLVFKNQTNSQRVASLAKLFPDSVFIHTVRDPFPVADSIIEHRQRFLGSTDKWYSIKPDNYEQIKDLDFVEQVVRQIHGVDSMIDRAFQELDQDRWVRVRYEEICKNWPEVVEQVKGRLKRFGPVHGRKGASSPVIRMQDVPVETDMQKAIIESIRKVYG
>NC_009943.1|WP_012175246.1|2212337_2213504_-|hypothetical-protein
MADLKKIYEHIFRLEYEQGFKSYDIYDGSGLKVPLLRQLKSGRMASTYFNKFSPFNFRTVLGISKRKYPHAVACMVDAYFNCPVDRIPEDFIKEQFEWLISKSLKDRYGFHCWNGLGISIDMKGGGIKPDIPGLIGTSAVARVLCAYYQKTADERIPEILRSVRYDLLTNYFQMYSGFSFFRYKPVTPPWVFTINASAKGAALICHINHILGEDQGLEQVASAVSSILDSQEKDGKWKYTMDLKNGRHKVQTDFHQAYIIKALLDIHHSGMLDIPLADAIIRGIDFQNKTQLLSSGAIYYRHPVKYPFNIHNQLYAFYVNKAASFLDKSYDRKGELILDWALKHLYDSGLGFIYGAYPAIKIRIPYARWGNAHALYLFSLLMNSSQPS
>NC_009943.1|WP_012175256.1|2226210_2226456_+|hypothetical-protein
MQQVTIRGLGEDIERAIRKMASDNGKSMNQVIKEIIHKEFEKSRRPASSLSEMAGGWSRPEAAEFEAAIQSCEQIDEDLWK
>NC_009943.1|WP_012175257.1|2226452_2226860_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MKLILDTNAYVGFKLGIAPLVAYITRADIVFLSPVVLGELMFGFRNGSRFDRNMEELNRFLEHPAVEVMGMTQITSDRYARIATQLKQQGTPLPTNDIWIAAQTMESGTELVTMDRHFEKIANLVYRLFDSPKPG
>NC_009943.1|WP_012175258.1|2227180_2228383_+|ATP-binding-protein
MKNFERSLVPLLVGELEKKQTVFQVLTGPRQVGKTTIARQVMDKLPFPFIYASADSPLPPGPEWVETQWRRAEVEADRSGGPVLLVLDEAQKVRGWSEILKSKWDAAIRTARDIRLLVLGSSALLIQAGLSESLTGRFFLHRCSHWPFQECVDAFGWDLPQWLYFGGYPGAAVFCHDESKWKRYVTDSLIETVLARDVLQLQKITKPTLLRHLFALAATFPAQILSYNKMLGQLQDVGNTTTIAHYLRMLETAFLVSGLELFSRGSVRKRGSSPKLVLWNNALVNALSNRSFDESIADAIWWGRLVENAVGGYLVNMLPPADYTITYWRDGNREVDFVITRGAKLWAIEVKSGRSGKTSGLESFRSRYKGARTLVVGDNGIPLQEFFATPAEIWFSPDVS
>NC_009943.1|WP_012175259.1|2228562_2229816_-|Fic-family-protein
MNLSCQSPVLSPAIPEKELLGPLKDMAQEVVTASAYLEGRIAPDTARSLGEKLRYLNSYYSNLIEGHKTLLPEIEQALLKKFAEDDSRRYAQELCAAHVEVEREFMAALDENPPDNICGLDYLGSIHRRFYERLPEHHRYTHHSGGFTGIHVHPGRMRDANVSVDQGQTTHGPDVKELPQKLAEFAALYNPSNFHGDEKLIAAAAAHHRLTWLHPFRDGNGRVARLFISFYLSAININKSNLWSINRGFSRKKNWYMINLQSADSPDKKSNGFDQEIFADFCAFFLESCLEQIAFMDKLLDFKRVDARIDGYINERGKHLGAESPIDPRSGRLLKALFSQGKIPRGEAGAIMNMDAYSDRQIRRVVSQLIKEGLVESDSHRAPLRIGLPMKVLRHYFPALFDPSVMGETYLHDGEEA
>NC_009943.1|WP_167320870.1|2230267_2231560_-|ATP-binding-protein
MRGARQVGKTWLVRDFAKQQGLQLIELNLEKYPDYAGLFSGNSPREILKNIEAQLAFKILPESACLFLDEIQAAPELFAKLRWFREDMPELPVIAAGSLLEFVLKKADFSMPVGRVTYFYVEPLSFFEFVLALGNEPLYQKMLSTSPQAPLPQPLHARCMELYRQYCLVGGMPEAVRTWLDGRDMQSCIKIQHDLLSTYRDDFHKYGGEIDARLLHKILLSVAGQLGNKFVYSRVDPDVKAPLVKKLLMFLSQAKVCSMVVHTSGNGLPLGAESNDKFFKALMVDVGLVSAHLGLASVKSADLDNMLLSNRGGLAEQFVGQQLRAAQTPAMDPRLFYWQRTGGRQGEIDYILQHGADIVPVEVKSGAAGSMKSLHQFMAEKSLKMAVRLDANPPSVKEMSVKTTQGRLVKYRLLSLPLYLAGNINVLLER
>NC_009943.1|WP_041280479.1|2231972_2232209_+|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MKTITAANANRGFSNLLREVRKGEEITILSRGKPVAKITSCDSGALQKKTMKNILVTRLKAQGVTGSRNWTREELYGD
>NC_009943.1|WP_012175262.1|2232211_2232661_+|PIN-domain-containing-protein
MRVALDTNILAYAEGVGDSRRCARAIRLIEQLPADLVLLPAQTLGELFRVLAGKAKGEPGLVREAIMAWADSFEVADSSWSAFQAAIDLAIDHKLQMWDALIMAVAAENRCRLLLSEDLQSGFIWRGVTVVNPFAEPSSPQLDNILQTE
>NC_009943.1|WP_012175263.1|2232867_2233131_+|hypothetical-protein
MAAKYIWWETPDHAVSRPARVVTQVMNIGDFEDVQRLVACMGESSLRDIVQAAEAGQFNARSWTYWHYRLGLAEPGGVPSLPVRKIQ
>NC_009943.1|WP_012175264.1|2233127_2233811_+|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MNHTFKPCLDILPPAQKRIWPALRFTRTAGYVLYGGTAVALRCGHRVSVDFDFFSHKPLNKTEIFSEFSFSREATVLQDQPHTLTLLIPTQGPDANDVKLSFFGQIGIGRVNTPNVTHDGVLQVASIEDLLATKLKVILQRVEAKDYRDIVALITAGAGLPAGLAAANAMYGKQFQPMESLKALTFFADGDLDTLTAAEKNFLIKAAGSVRNLPEVTIVSYELGVQG
>NC_009943.1|WP_012175265.1|2234149_2235163_+|UDP-glucose-4-epimerase-GalE
MKKVLLTGGAGYIGSHTCVSLLESGCEVLVVDNLCNSSAVALERVKAITGRAVMFEKVDMRDRAELDRVFKTFAPDAVIHFACLKAVGESTTDPLTYYANNVAGSVVLFEAMEAAGVKNIVFSSSATVYGDPETVPVTEAAAICPCNPYGRTKRMIEEMLEDIHAAGKGWNIAILRYFNPVGAHASGLIGEDPRDVPNNLAPYIAQVAVGRRQQLNVYGDDYPTKDGTGVRDYIHVCDLAEAHVKALEKLAQNPGLVTYNLGTGTGHSVLEVVAAFERACGRPIARTVTGRRAGDVAEYYADPSRAEKELGWKARRTLDDMAADTWRWQSGNPEGYR

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Crispr_ID: NC_009943_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009943_4

2230147-2230232

Orphan

Consensus_repeat	Method
GATGCCCTTACGGGCACACTACAAACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009943_4

>merge|NC_009943|4|2230147-2230232|CRISPRCasFinder
GATGCCCTTACGGGCACACTACAAACGGGTTCGTCGCTCAAGACTTTCTCCCTGTTCGATGCCCTTACGGGCACACTACAAACGGG

>NC_009943|4|4|2230147-2230232|CRISPRCasFinder
GATGCCCTTACGGGCACACTACAAACGGG	TTCGTCGCTCAAGACTTTCTCCCTGTTC
GATGCCCTTACGGGCACACTACAAACGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009943.1\|WP_041280479.1\|2231972_2232209_+\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|226603
NC_009943.1\|WP_167320869.1\|2216325_2217387_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_009943.1\|WP_167320871.1\|2238343_2239312_-\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377406
NC_009943.1\|WP_012175263.1\|2232867_2233131_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012175252.1\|2218807_2219734_-\|sulfotransferase-family-protein	unknown	unknown	gnl\|CDD\|379204
NC_009943.1\|WP_041280477.1\|2221191_2222277_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NC_009943.1\|WP_012175256.1\|2226210_2226456_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012175255.1\|2222632_2224990_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|377422
NC_009943.1\|WP_012175258.1\|2227180_2228383_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_009943.1\|WP_012175259.1\|2228562_2229816_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_009943.1\|WP_012175257.1\|2226452_2226860_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350320
NC_009943.1\|WP_153304406.1\|2217436_2218597_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377422
NC_009943.1\|WP_012175265.1\|2234149_2235163_+\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
NC_009943.1\|WP_012175264.1\|2233127_2233811_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NC_009943.1\|WP_012175262.1\|2232211_2232661_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350259
NC_009943.1\|WP_012175269.1\|2239744_2240593_-\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|377406
NC_009943.1\|WP_167320870.1\|2230267_2231560_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379306
NC_009943.1\|WP_012175266.1\|2235340_2236981_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NC_009943.1\|WP_153304510.1\|2219797_2221114_-\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240533
NC_009943.1\|WP_012175267.1\|2237184_2238198_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475

Protein	Function_ID	Function_description	E-value
NC_009943.1\|WP_041280479.1\|2231972_2232209_+\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	6.80253e-11
NC_009943.1\|WP_167320869.1\|2216325_2217387_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	6.20022e-40
NC_009943.1\|WP_167320871.1\|2238343_2239312_-\|FecR-domain-containing-protein	gnl\|CDD\|377406	pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.	2.54238e-17
NC_009943.1\|WP_012175252.1\|2218807_2219734_-\|sulfotransferase-family-protein	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	0.000250851
NC_009943.1\|WP_041280477.1\|2221191_2222277_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	2.81499e-149
NC_009943.1\|WP_012175255.1\|2222632_2224990_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	6.72989e-13
NC_009943.1\|WP_012175258.1\|2227180_2228383_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	3.89151e-38
NC_009943.1\|WP_012175259.1\|2228562_2229816_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	8.12148e-19
NC_009943.1\|WP_012175257.1\|2226452_2226860_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350320	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.67879e-60
NC_009943.1\|WP_153304406.1\|2217436_2218597_-\|hypothetical-protein	gnl\|CDD\|377422	pfam04932, Wzy_C, O-Antigen ligase. This group of bacterial proteins is involved in the synthesis of O-antigen, a lipopolysaccharide found in the outer membrane in gram-negative bacteria. This family includes O-antigen ligases such as E. coli RfaL.	0.00539072
NC_009943.1\|WP_012175265.1\|2234149_2235163_+\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NC_009943.1\|WP_012175264.1\|2233127_2233811_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	1.17702e-09
NC_009943.1\|WP_012175262.1\|2232211_2232661_+\|PIN-domain-containing-protein	gnl\|CDD\|350259	cd18692, PIN_VapC-like, uncharacterized subfamily of the VapC-like nuclease family of the PIN domain superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include FitB toxin of the FitAB TA system, eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.70966e-40
NC_009943.1\|WP_012175269.1\|2239744_2240593_-\|FecR-domain-containing-protein	gnl\|CDD\|377406	pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognizes iron dicitrate in the periplasm.	3.32e-14
NC_009943.1\|WP_167320870.1\|2230267_2231560_-\|ATP-binding-protein	gnl\|CDD\|379306	pfam13635, DUF4143, Domain of unknown function (DUF4143). This domain is almost always found C-terminal to an ATPase core family.	1.75496e-27
NC_009943.1\|WP_012175266.1\|2235340_2236981_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NC_009943.1\|WP_153304510.1\|2219797_2221114_-\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.2303e-48
NC_009943.1\|WP_012175267.1\|2237184_2238198_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	5.07172e-145

>NC_009943.1|WP_012175259.1|2228562_2229816_-|Fic-family-protein
MNLSCQSPVLSPAIPEKELLGPLKDMAQEVVTASAYLEGRIAPDTARSLGEKLRYLNSYYSNLIEGHKTLLPEIEQALLKKFAEDDSRRYAQELCAAHVEVEREFMAALDENPPDNICGLDYLGSIHRRFYERLPEHHRYTHHSGGFTGIHVHPGRMRDANVSVDQGQTTHGPDVKELPQKLAEFAALYNPSNFHGDEKLIAAAAAHHRLTWLHPFRDGNGRVARLFISFYLSAININKSNLWSINRGFSRKKNWYMINLQSADSPDKKSNGFDQEIFADFCAFFLESCLEQIAFMDKLLDFKRVDARIDGYINERGKHLGAESPIDPRSGRLLKALFSQGKIPRGEAGAIMNMDAYSDRQIRRVVSQLIKEGLVESDSHRAPLRIGLPMKVLRHYFPALFDPSVMGETYLHDGEEA
>NC_009943.1|WP_012175258.1|2227180_2228383_+|ATP-binding-protein
MKNFERSLVPLLVGELEKKQTVFQVLTGPRQVGKTTIARQVMDKLPFPFIYASADSPLPPGPEWVETQWRRAEVEADRSGGPVLLVLDEAQKVRGWSEILKSKWDAAIRTARDIRLLVLGSSALLIQAGLSESLTGRFFLHRCSHWPFQECVDAFGWDLPQWLYFGGYPGAAVFCHDESKWKRYVTDSLIETVLARDVLQLQKITKPTLLRHLFALAATFPAQILSYNKMLGQLQDVGNTTTIAHYLRMLETAFLVSGLELFSRGSVRKRGSSPKLVLWNNALVNALSNRSFDESIADAIWWGRLVENAVGGYLVNMLPPADYTITYWRDGNREVDFVITRGAKLWAIEVKSGRSGKTSGLESFRSRYKGARTLVVGDNGIPLQEFFATPAEIWFSPDVS
>NC_009943.1|WP_012175257.1|2226452_2226860_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MKLILDTNAYVGFKLGIAPLVAYITRADIVFLSPVVLGELMFGFRNGSRFDRNMEELNRFLEHPAVEVMGMTQITSDRYARIATQLKQQGTPLPTNDIWIAAQTMESGTELVTMDRHFEKIANLVYRLFDSPKPG
>NC_009943.1|WP_012175256.1|2226210_2226456_+|hypothetical-protein
MQQVTIRGLGEDIERAIRKMASDNGKSMNQVIKEIIHKEFEKSRRPASSLSEMAGGWSRPEAAEFEAAIQSCEQIDEDLWK
>NC_009943.1|WP_012175255.1|2222632_2224990_-|tetratricopeptide-repeat-protein
MLSISRFLYLATLVFAPLAFGSVESWAFFFLTLLTGAAISFYLLHTRRHAAPIYRVPCMLPLALLGLFIFLQIIPLPQAVLSLLSPNAAQLRNETIGILLPDRAWPLTLNLHATLFELCRWLLWVGFYWISVQLLSDKAMLRRTLLFLAFFAGIFAFSSILQHIFTDNRALWFRYISVQSCSIFGSYINRNHYAGLMAMLFGPTLGLLLALRPPRQFGTMREKILGLFEEKETPLFILLLLSASIMVMSVFISLSRGGMTSLCISSLFFILMASGKKFSGRHTKMKITAAMLLCAVLMALTWVGWETIDNRFSTIYAADDIMRIGRLRYWGRCLAGGLDFLTTGVGFGAFEVAGPIYQTYYMGAILDHAHNDYLELLIEGGIPGVLLFLVFFLCLFQVVQKTLKKRKESYSILVCIGAITGIVAILLHSFTDFNLHIPANALYLAFLCGLAVAAAHTRLRNHITPPTYLPPAPNRAALVTPFLFILLWPPLLALSMGQWMADQHIQPFIKAPLNNTTAPALLEQAAESARRATAFSPWSATAHTLLGDAAFFSGNPEQALDAYQQALCFTPTRSTLLQKAGQAARNAGLPLSRAEALMAAGVKTYPMRPGAHGAHAGFLFETGNKEKAMSVVRTGIKTHPSLARQFFTLMTYAGLTPAEMFTALPANSYVLTQFAAHIQNTDYDFMRRTILTAAVNAADQEAEPSPKAYINLAHLYLREKNHDQTITVLERGVTRLPDHPYLLYLLARTYEENQIVYKALDLYKKLQIISPGYRDTEQRLKAMKR
>NC_009943.1|WP_041280477.1|2221191_2222277_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MQFIDLKSQQDRIRDRIETRIRQVLDHGQYIMGPEVQELEVKLADYTGVKHCITCASGTDALLMALMALDISPGDEVITVPYTWISTAEVIALLRAKPVFIDIQPDTFNMDPAKLEAAITSRTKAIIPVGIYGQCADMTRINIIAAKHNIPVIEDGAQSFGATHHGKKSCNLSLIGCTSFFPSKPLGCYGDGGAIFTPNDALADKLRQIRIHGQKVKHQHPLVGINGRLDTLQAAILLEKFTLFSEECHRRAEIADRYNVLLADIPGIQTPVVAANNTSVYAQYTILTDDREALSSNLKSKDIPSVAYYTAPLHLQGAFTDLGHQPGDFPISEEVAAHCLSLPMSPYLRREDQAAVVAAMK
>NC_009943.1|WP_153304510.1|2219797_2221114_-|oligosaccharide-flippase-family-protein
MHNLISDKKFSEILTGSVWALGARVSATVLALVSSVIIARFYGAEMVGVVAVVNSFLILATTFTVFGTNTSILRLIPEYLAKYSPTSAFKVYRKTQYMVIGFSLLTGTLFYFSANFIAAKIFNKPHLSIYFAIASIFIVFKSLMLLNTSAVRGLRLIRVFAMMQMLPQGFNLLLLIALGILTAQPGVPVYALLCGYALTGIFGWGIMNYTFKRRIQPGDKLHPTSTKKILAISLPMLMVATMNFFIAQTGVIMLGMFRTEAEVGYYSIAVKLSTLTSFVLSAINTISAPKFSELFHSGKIDELFYVAKKSTKLIFYATVPILFFLLIFGKLVLSILFGAEFTVAYTALLILIIGQFINSISGSIGYFMNMIGYHNQLRNILFSAAALNILFAFVLIPKIGINGAAIASMLCLVFWNISALTYIYKKYGRTTTYIPFID
>NC_009943.1|WP_012175252.1|2218807_2219734_-|sulfotransferase-family-protein
MASLLNNIPDICCTPEAEILSKLLLTGNAKDPVSEETIKIIETAMASDPKLSFWNLTLSDLDIRFGSKTSKEEMLFSILRAYGKKNKPDANVLIFKCPILNDYLKNCCKNEDLIRSDLFFLALLRDPRASFESQKRSKSLNEFVMDASPRHSAHKWVKFHNMIKNIKAFNCGYVVKYEELILNPTNTLTKICDALRLNATLKNVLVEGNSYYHSIPYNQKKLHQGLLNPFNTEKIDSWKKALNGSEIFLIEIIAKQQIKEWDYKLFSPHPNFINLMIVFCVSEFKSFLNRSISFFRKTTIKYKVLKRY
>NC_009943.1|WP_153304406.1|2217436_2218597_-|hypothetical-protein
MEFTGGASASIHSGIIRVPVILLIAFFYVRKIKSDKLTCSIVFFLLYLLILVLFSSNIFRSLSTYTKFAISLSMIPIAFYNIDTQAGLKRLHISLLIGAGILQINYVLAQMFHFGEKAYSEDGFYLGATGVTMTYIFCYAIAVAPLTYALLKKDRSKLIATVMYGFAAIVTLITFRRGSILAMMVSFLILLYLSSSKYKKTLISLLIFIGIGFWGVYHWQEQRLQNLFEQRIVYSIEREFDEKAFGRVNETKEVWYEFFNKSLSHSLFGSELFNSVEYFNYWKQTGRTIHIDYNNILHGSGLIGLILFILIFWQMIKKFKLYETTLEHPILFPQLKMVFWATVATNLVLSLSTQLWYVTSYSIFGLLIGSTLRAAKSNIAIQNNKY
>NC_009943.1|WP_167320869.1|2216325_2217387_-|glycosyltransferase-family-4-protein
MGGVANYYLSIKKHLGADYQYVYRGNVSREESGTSVPGRMVKDYVLFCRRTWSDTDVVVINSSLGVGGFFRDGLYVLLSPVHVRKVVFFHGWNLGFEKRIGASFGLKTWLNRTFLTADHIIVLSAGFKKKLRHWGYTGPISLGTTIVDEQLLEDVNFQRLSKERAENKNPTILYLGNISEAKGVRGVIQAYQLLFSRNGLKNLKCIMAGQGNMLEELKAQADSQNLDIQFPGYVREKQKTGVFKSAHVYVFPSAHGEGMPTSVLEAMAFGLPVITTRVSGISDFFEDGKMGLFLDTRDPEHIAKKIRYLLDRPELMHQMSEYNYNYAKEHFYAGKVADWFKSIIESVIHDDNE
>NC_009943.1|WP_167320870.1|2230267_2231560_-|ATP-binding-protein
MRGARQVGKTWLVRDFAKQQGLQLIELNLEKYPDYAGLFSGNSPREILKNIEAQLAFKILPESACLFLDEIQAAPELFAKLRWFREDMPELPVIAAGSLLEFVLKKADFSMPVGRVTYFYVEPLSFFEFVLALGNEPLYQKMLSTSPQAPLPQPLHARCMELYRQYCLVGGMPEAVRTWLDGRDMQSCIKIQHDLLSTYRDDFHKYGGEIDARLLHKILLSVAGQLGNKFVYSRVDPDVKAPLVKKLLMFLSQAKVCSMVVHTSGNGLPLGAESNDKFFKALMVDVGLVSAHLGLASVKSADLDNMLLSNRGGLAEQFVGQQLRAAQTPAMDPRLFYWQRTGGRQGEIDYILQHGADIVPVEVKSGAAGSMKSLHQFMAEKSLKMAVRLDANPPSVKEMSVKTTQGRLVKYRLLSLPLYLAGNINVLLER
>NC_009943.1|WP_041280479.1|2231972_2232209_+|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MKTITAANANRGFSNLLREVRKGEEITILSRGKPVAKITSCDSGALQKKTMKNILVTRLKAQGVTGSRNWTREELYGD
>NC_009943.1|WP_012175262.1|2232211_2232661_+|PIN-domain-containing-protein
MRVALDTNILAYAEGVGDSRRCARAIRLIEQLPADLVLLPAQTLGELFRVLAGKAKGEPGLVREAIMAWADSFEVADSSWSAFQAAIDLAIDHKLQMWDALIMAVAAENRCRLLLSEDLQSGFIWRGVTVVNPFAEPSSPQLDNILQTE
>NC_009943.1|WP_012175263.1|2232867_2233131_+|hypothetical-protein
MAAKYIWWETPDHAVSRPARVVTQVMNIGDFEDVQRLVACMGESSLRDIVQAAEAGQFNARSWTYWHYRLGLAEPGGVPSLPVRKIQ
>NC_009943.1|WP_012175264.1|2233127_2233811_+|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MNHTFKPCLDILPPAQKRIWPALRFTRTAGYVLYGGTAVALRCGHRVSVDFDFFSHKPLNKTEIFSEFSFSREATVLQDQPHTLTLLIPTQGPDANDVKLSFFGQIGIGRVNTPNVTHDGVLQVASIEDLLATKLKVILQRVEAKDYRDIVALITAGAGLPAGLAAANAMYGKQFQPMESLKALTFFADGDLDTLTAAEKNFLIKAAGSVRNLPEVTIVSYELGVQG
>NC_009943.1|WP_012175265.1|2234149_2235163_+|UDP-glucose-4-epimerase-GalE
MKKVLLTGGAGYIGSHTCVSLLESGCEVLVVDNLCNSSAVALERVKAITGRAVMFEKVDMRDRAELDRVFKTFAPDAVIHFACLKAVGESTTDPLTYYANNVAGSVVLFEAMEAAGVKNIVFSSSATVYGDPETVPVTEAAAICPCNPYGRTKRMIEEMLEDIHAAGKGWNIAILRYFNPVGAHASGLIGEDPRDVPNNLAPYIAQVAVGRRQQLNVYGDDYPTKDGTGVRDYIHVCDLAEAHVKALEKLAQNPGLVTYNLGTGTGHSVLEVVAAFERACGRPIARTVTGRRAGDVAEYYADPSRAEKELGWKARRTLDDMAADTWRWQSGNPEGYR
>NC_009943.1|WP_012175266.1|2235340_2236981_+|glucose-6-phosphate-isomerase
MRTSRLTDLDLWKQLKAHAEKMALPENHLKHLTMAPERLAEFSIQALDMVYDFSRQRVDRQAIDLLMELAWERKVTQRFQAMTTGAVVNTTENRAALHTACRDFSKAKRVVNKIDVTAEMARVRKEIREFSEAVHAGQITGATGKPFAHVVVVGIGGSYLGTEFVARALAAYADKGICLHFLANVDIHNFGEIAEAIDPETTLWVIVSKSFTTAETMANANQAAAFMKEQGLDPARHFVSVTSKGSPGDQTGQDAPFPVLRSFHMFDFIGGRYSVTSAVGGVPLSLYLGYDRFETFLKGAHQMDVHAATAPPTTNMPLTAALLGIWNNNFLEYPAQAIIPYASPLARLAPHVQQLYMESNGKSVTAEGKPLGVRSGVIIFGEPGTNAQHSFFQLAHQGAPFPIDFIGVIKPQYDAFQALSRGVTNHQELWANLISQPRALAEGKESEDGHRSFSGNRPSSTILLEDLSPASVGKLLAFYEARTVYEAFVWGINPFDQYGVELGKKLASEIRSQMAAKNRDAGHTFENVDSISRFYLEKLMGKGNDE
>NC_009943.1|WP_012175267.1|2237184_2238198_-|ketoacyl-ACP-synthase-III
MIRTLIRGTGRYVPERLVTNDELSKKMETSDEWIRQRTGIEQRYWVPEGGETGASDLGLEASKIALERAGWTPEDLDFIIFATLSPDIFFPGSGCLLQHKLGLSSTPALDIRQQCTGFIYGLATADAYIRSGMARRVLVVGSEVHSTGLDVTTRGRDVAVIFGDGAAAVCLEAVETEEPVGVLASLLFAEGKHAASLMLEAPASRMSPERITHEMLDEGRHYPKMNGKLIFKLAVTRLPELTLQIMEKAGLTSFDEIDLIIPHQANLRINQFYQETLKLPEGKIYNNIQKYGNTTAATIPLALDEVIEQGRFKKGDTALFLGLGAGVTWGANLYRHA
>NC_009943.1|WP_167320871.1|2238343_2239312_-|FecR-domain-containing-protein
MGNRTTGLWSVLLGVTLLCCMSSATVFAAADIPDNLVIQKHYRQGMGESVGSVETARGQAFIMHTDRKYGYEAKKGLPLYNGDTLFTRSPGAMTIVLKDNSKMALAADTSLVINKSIYDPAGKSRMSFVSMLAGKARFLVTKLSDYRHSRFNVKTGSSVVGVRGSDFIIEQVGDKIIISCLDNTVLEVFNPDFPLDEPVIVESFQQLVAAIGQLPGNPIDVSPEELKKLVKDLGLSGDDDDDDNDGDSGTGDGDEEGDDDDDGEGDPLLNPDLLENPEGEGAWGDDGYPLDDLPGIIEDIEKNVIQDEVTEPLPDMPNHPSL
>NC_009943.1|WP_012175269.1|2239744_2240593_-|FecR-domain-containing-protein
MKNDRKNVFIKGTIFMAVVLLLGCMTPGPAIAGAIPGGLMIQSGYAPGAGVPVGKIRTVHGKAFIMHADRQAVYPVTAGLAVYQDDTLVTKKGGRIVLVLNDDSVLTLGPETEMVLDQSVFDPGASNRSVLVNLLTGKARFFVKKFAALRNSTFKVRTATSVAAVRGSDFIIQQVGDKTIITTLGQTVLEVSNPNFPLAEPVVVNSFEQLIVTLGQLPGSPIQVTPEEIQAILESLGIPTGGPGTGGGADDDDDDDDTGMTGVPPEPPSFPEPTRPVSPYTP

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Crispr_ID: NC_009943_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009943_5

2383763-2383909

Orphan

Consensus_repeat	Method
TGTGCGTTGCGGACGAAGCATCCGTTTGTAGTGTGCCCGTAAGGGCATCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009943_5

>merge|NC_009943|5|2383763-2383909|CRISPRCasFinder
TGTGCGTTGCGGACGAAGCATCCGTTTGTAGTGTGCCCGTAAGGGCATCGTACTCGGCCGGGGTAAAACGCCTGACGGCGTCACTACGAACAGGGATGTGCGTTGCGGACGAAGCATCCGTTTGTAGTGTGCCCGTAAGGGCATCGT

>NC_009943|5|5|2383763-2383909|CRISPRCasFinder
TGTGCGTTGCGGACGAAGCATCCGTTTGTAGTGTGCCCGTAAGGGCATCGT	ACTCGGCCGGGGTAAAACGCCTGACGGCGTCACTACGAACAGGGA
TGTGCGTTGCGGACGAAGCATCCGTTTGTAGTGTGCCCGTAAGGGCATCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_009943.1\|WP_012175397.1\|2396864_2398679_-\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235775
NC_009943.1\|WP_012175388.1\|2384025_2385489_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224001
NC_009943.1\|WP_012175381.1\|2375909_2376692_+\|cephalosporin-hydroxylase	unknown	unknown	gnl\|CDD\|368223
NC_009943.1\|WP_012175391.1\|2388719_2390684_-\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NC_009943.1\|WP_012175379.1\|2373962_2374814_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NC_009943.1\|WP_012175378.1\|2372742_2373966_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|378005
NC_009943.1\|WP_012175393.1\|2392861_2393659_+\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NC_009943.1\|WP_012175380.1\|2374803_2375862_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|372616
NC_009943.1\|WP_012175390.1\|2387522_2388560_-\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212518
NC_009943.1\|WP_012175385.1\|2380430_2381549_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340838
NC_009943.1\|WP_012175392.1\|2390702_2392604_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223504
NC_009943.1\|WP_012175396.1\|2395842_2396742_-\|signal-peptide-peptidase-SppA	unknown	unknown	gnl\|CDD\|132934
NC_009943.1\|WP_041280494.1\|2381596_2382586_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133029
NC_009943.1\|WP_012175394.1\|2393732_2394740_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012175387.1\|2382588_2383632_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NC_009943.1\|WP_012175383.1\|2378262_2379165_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NC_009943.1\|WP_012175389.1\|2385795_2387526_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|235279
NC_009943.1\|WP_012175382.1\|2376696_2378220_+\|oligosaccharide-flippase-family-protein	unknown	unknown	gnl\|CDD\|240533
NC_009943.1\|WP_153304409.1\|2394858_2395788_-\|putative-2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|180488
NC_009943.1\|WP_012175384.1\|2379418_2380372_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014

Protein	Function_ID	Function_description	E-value
NC_009943.1\|WP_012175397.1\|2396864_2398679_-\|30S-ribosomal-protein-S1	gnl\|CDD\|235775	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.	0
NC_009943.1\|WP_012175388.1\|2384025_2385489_-\|hypothetical-protein	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	5.38462e-05
NC_009943.1\|WP_012175381.1\|2375909_2376692_+\|cephalosporin-hydroxylase	gnl\|CDD\|368223	pfam04989, CmcI, Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.	7.46902e-128
NC_009943.1\|WP_012175391.1\|2388719_2390684_-\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NC_009943.1\|WP_012175379.1\|2373962_2374814_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	2.35822e-36
NC_009943.1\|WP_012175378.1\|2372742_2373966_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|378005	pfam08484, Methyltransf_14, C-methyltransferase C-terminal domain. This domain is found in bacterial C-methyltransferase proteins. This domain is found C-terminal to methyltransferase domains such as pfam08241 or pfam08242. But this domain is not a methyltransferase.	1.98671e-91
NC_009943.1\|WP_012175393.1\|2392861_2393659_+\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	2.60972e-26
NC_009943.1\|WP_012175380.1\|2374803_2375862_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	8.38208e-15
NC_009943.1\|WP_012175390.1\|2387522_2388560_-\|histone-deacetylase	gnl\|CDD\|212518	cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII. Class II histone deacetylases are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. This group includes animal HDAC4,5,6,7,8,9,10, fungal HOS3 and HDA1, plant HDA5 and HDA15 as well as other eukaryotes, archaeal and bacterial histone-like deacetylases. Eukaryotic deacetylases mostly use histones (H2, H3, H4) as substrates for deacetylation; however, non-histone substrates are known (for example, tubulin). Substrates for prokaryotic histone-like deacetylases are not known. Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. Histone deacetylases usually act via association with DNA binding proteins to target specific chromatin regions. Interaction partners of class II deacetylases include 14-3-3 proteins, MEF2 family of transcriptional factors, CtBP, calmodulin (CaM), SMRT, N-CoR, BCL6, HP1alpha and SUMO. Histone deacetylases play a role in the regulation of cell cycle, cell differentiation and survival. Class II mammalian HDACs are differentially inhibited by structurally diverse compounds with known antitumor activities, thus presenting them as potential drug targets for human diseases resulting from aberrant acetylation.	2.29716e-136
NC_009943.1\|WP_012175385.1\|2380430_2381549_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340838	cd03809, GT4_MtfB-like, glycosyltransferases MtfB, WbpX, and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. MtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.	2.05454e-100
NC_009943.1\|WP_012175392.1\|2390702_2392604_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|223504	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion].	2.04205e-72
NC_009943.1\|WP_012175396.1\|2395842_2396742_-\|signal-peptide-peptidase-SppA	gnl\|CDD\|132934	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain.	1.55932e-94
NC_009943.1\|WP_041280494.1\|2381596_2382586_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133029	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	2.84209e-29
NC_009943.1\|WP_012175387.1\|2382588_2383632_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.46744e-50
NC_009943.1\|WP_012175383.1\|2378262_2379165_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.13098e-30
NC_009943.1\|WP_012175389.1\|2385795_2387526_-\|AMP-binding-protein	gnl\|CDD\|235279	PRK04319, PRK04319, acetyl-CoA synthetase; Provisional.	0
NC_009943.1\|WP_012175382.1\|2376696_2378220_+\|oligosaccharide-flippase-family-protein	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.05765e-29
NC_009943.1\|WP_153304409.1\|2394858_2395788_-\|putative-2-dehydropantoate-2-reductase	gnl\|CDD\|180488	PRK06249, PRK06249, putative 2-dehydropantoate 2-reductase.	0
NC_009943.1\|WP_012175384.1\|2379418_2380372_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	2.39936e-143

>NC_009943.1|WP_012175387.1|2382588_2383632_-|glycosyltransferase-family-2-protein
MSNIRLLGMVVGLALFLLSFRIFRGQKWNRANFFLFAGSGLFLFALSLNPGLINILQRMLALDDAERGRLMALLIFAVGVLWFALILMRTSFLKHKYQFDRFVRAVGIANYIEKIRTDLAGCDVAVLIPAYNEADNLRAVLPRIPKEVGGLKLGVVVVDDGSDDGTCECAIAAGAFAVRSPINRGGGAALRLGYDILQKADIDICVTMDADGQHNPEEIPALLSPLLEEQCDIVIGSRILGSREKDSLFRLAGVYFFSFIINRLTGLNITDPSSGFRAFKMDVVRRVPLDEDQFHTSELIINAAKGGFCIREAPITILRRKYGESKKGRNWLYGLNFAKIVVRSWWR
>NC_009943.1|WP_041280494.1|2381596_2382586_-|glycosyltransferase-family-2-protein
MKASVIISAYNNLEDLRLLLPSLEQQVLDRHEMEVILRDDGSGDGTGDWVRQHHPWVQLIQGENAGFSKSNNIAADRATGEALVFINADTILDKRFITAGLNVFDHEPLLGGLNCNMIMPWVMDVSAFLEGQRPAAGHGHFLNRYGFAEYREVKTERCRTAFLSGGGCFVRRMALGEESPFAEDLWGGTSYCEDLDLSLRLLAKGWRLCFEPAAILYHNQRPVQEAGFNQLKKFLRISANRVTVYAINLSLSCFLRVFPRLFYGVFHKVVLLPLPEKIRKKILAGALIMMPLFLMLLPYWIYRGIGWASGRNSIQTLSFLKEGTYGCDI
>NC_009943.1|WP_012175385.1|2380430_2381549_-|glycosyltransferase-family-4-protein
MKIGINALYLLPGKVGGSETYIRNLVKHLDLLGGDNTYFIFINKESIGVFPETSRIKTVLCPIHAASRPIRILWEQCILPFQIKKYNIDAVLSAGMTAPFFCPARSILTILDLQHINQPQNFSRFHLFFLRSIIYLSAKTADGIMTISEHVKQDIVKFYKIRPEKIAVGYLAVQHNIFTPAAGKDDLAIRAKYGLPERYILYAAALLPHKNHERLLTAFKAVKDKIPGKKLVFTGAWNQGYDKVANTISALDLKKDVIMLGWLPFEEISAVFRGAELFVYPTLHEGFGLPILEAMASGVPVVCSKIEPLIEVSGDASMFVDPLDPADIANGILSVLTQNHLREHLVEKGAKRARQFTWEATAQTTLVFLNRA
>NC_009943.1|WP_012175384.1|2379418_2380372_+|GDP-mannose-4,6-dehydratase
MKKALICGVSGQDGAYLAKLLVEKGYRVCGTSRDAQNATFSNLKKLDILNSIKTYSMALNDFRSVLHVLNDVEPDEVYNLSGQSSVGLSFEQPVESMESISLGTLNMLEAIRFLSKKIRFYNAGSSECFGETTVDKPADEATPFHPQSPYAVAKSAAHWQVATYREAYGLFACTGILFNHESCLRPERFVTRKIIESARRISMGSKETLVLGNIKVVRDWGWAPEYVDAMWRILQMDSPADFVIATGHSTSLEHFVELVFAAFNLDWEKHVETRPELLRPLDLVQSHANPACAMKKLGWQAKNKVEEVVRLMVNETL
>NC_009943.1|WP_012175383.1|2378262_2379165_+|glycosyltransferase-family-2-protein
MIIEKIATTPKVSIGIPTYNRADLLRRSIESALGQDYPNIEVLVSDNASTDRTPEVCQFYTDTHGSRIKYIRQPVNLGATANFSKVLEMASGEFFMWLGDDDWIDSSYVKSCMRELLSDPALSLVSGSPRYYRSGVPACDGRWFNLLQERWWLRVLVYYIKVSDNGMFYGLMRTAQIRQINLSNTMGGDWLLIAGLSALGKLKTVPDTHAHRELGGATLSYRQIARSMGLSRMQAMFPMVSIAKAAWVDIVFKGAAYESRSIWGKLVIGSSVFGLILLKRPVFWILAMKFIIKKKLFPSV
>NC_009943.1|WP_012175382.1|2376696_2378220_+|oligosaccharide-flippase-family-protein
MSRVGANIIANYLGQGWASLMSIAFVPLYIRYLGMESFGLIGFFAVMQAWLPLIDMGITPTLNREMARFTAGAHTAQSIRNLLRSLEVVCFSLAGLITLAVWSASGYLAHTWIRNQQLPDEVVAQAIAIFAVVLALRLCEGIYRGALIGLQRQIWFNSVNAGLATLRHGGVVLLLAWGFPTIQAFFIWQGVSSLITVCVFAIKLYRSLPETTCPASISRRALTEVRHFASGMVGITFLALLLTQVDKLLLARLLPLATFGYYALAATIAGVVFMLVGPITQSVYPRMVELVTMDDRESLITIYHQSAQIVTALTAPVVLLLVFFAKGIVFMWSGDVHLAENAAPILSVLVVGTFLNGLMHIPYLLQIAHGWTRLAIQVNTVAVMILVPAILWLVPIYGPVGAAWIWVALNSGYVIVAVQLMHRRLIPSEKRRWYFADVLPPIITCLSVMLMANLIQPNSYENRISWLGFLFFVGSIGLVGSSLSSNLLRARLLSMAGIGLTHLKRKV
>NC_009943.1|WP_012175381.1|2375909_2376692_+|cephalosporin-hydroxylase
MNEDAIQLFMNARRQRVESYKESQMKKVAEEFMRTSIMPGYSYNFDWLGRPIIQYPQDMAAMQELIWKVKPDLILETGIAHGGSLIFSASMLALLEYCDAAEKGELLDPGNPIRRVLGIDIDIREHNRAAIEAHPMAGRIQMIQGSSVDAEVIQKVHAVAKEFSRILVCLDSMHTHDHVLAELEAYAPLVSPGSYCMVFDTIVEDLPEDFFSNRPWAKGNNPKTAVHEFLKTHREFEIDKEIEHKLLITVAPDGYLKRVE
>NC_009943.1|WP_012175380.1|2374803_2375862_+|methyltransferase-domain-containing-protein
MSHKTILEIPDLPVLQNRVYNTRAEAMACVRGDMRLAQSPLHGIVSNVAFQPEKVVYDKNYQNEQGCSAVFTRHLDQVAGIIEKHGAGKTVLEVGCGKGTFTEMLHTRNMAITGLDPAYEGNAPYIIREHFSPALGVTGDVIVLRHVLEHIALPFEFLKQIATANGGKGLIYIEVPCLDWIMENHAWFDIFYEHVNYFRLSDFNRFFGKIIDSGRFFGGQYIFVVADIASLGLNDSVNSEVFSTPSDFFSGIDDAIDIITKTPGRLHVVWGAASKGVLFSLHLHRRGHIPDFAIDINPAKQNRYLPATGLHVLSPESAFERLRPGDVIFVMNPNYLDEIRSQSGTKYQYVLP
>NC_009943.1|WP_012175379.1|2373962_2374814_+|NAD(P)-dependent-oxidoreductase
MRILVTGATGFVGRHLVPELLTRGHEVVTASRDARKATSMPWYDKVTPIVFDLLTETSNPTLLPDSLDMAIHLAWPGLPNYKSLFHFEENLPASYFFIKRLVQSGVTRIMVTGTCFEYGMQEGALSEDTPTMPSNPYGLAKDTLRKSLEMLHRYHDFNLQWIRLFYMYGPGQSPNSLLSLLDAAIDNDEPVFNMSGGEQLRDYLPVEEVARRVALLVGHPECTGIINCCSGQPVSVRQLVEQRIAERQSNISLNLGYYPYPEYEPMSFWGVPEKLDQVLKHEP
>NC_009943.1|WP_012175378.1|2372742_2373966_+|methyltransferase-domain-containing-protein
MRCRHCGSELTLPLMDFGTAPPSNAYLNAADLNRPETFYPLRVMACTNCRLVQTEDYARADQLFAPDYAYFSSTATTWLNHAADYCRMITARLELNDQSFVVEVASNDGYLLKNFVAAGIPCLGIEPTTATADAAERLSIPVLRKFFGADLAKQLVDENRQADLIIGNNVYAHVPDINDFTAGLKAALKPGGTITLEFPHLLNLIRECQFDTIYHEHFSYFSLYTVCRIFEAYELRVWHVEELPTHGGSLRVYGCHREDRRPDDPSVSRLLNKETQNGLLDENVYQSFQARADKIKNDLLAFLIEQKLQGNTVAAYGAAAKGNTLLNYAGIKPDLLAFVCDAAPSKQGRFLPGSRIPILPPSALQEEKPDYVLILPWNLKDEVMRQQGKISEWGGRFFVAVPELELL
>NC_009943.1|WP_012175388.1|2384025_2385489_-|hypothetical-protein
MKLHPRLHPIIYVRGFAMRDSEIEDTVNTPYMGFNLGSTRIRQSHDRSFLQYIFESPLIRLMKEYGYSDVYLDGKIRDDRIPRQSIIIHRYYEQAETGEGRRPGIMDAARDLSDRIEEVRNHVCGGDPKAERAFRVYLVAHSMGGLICRCLLQNDKVGSRVAKQSVDKVFTYGTPHNGIEIGGINVPGILGLWDISNFNRGNIAKFLDLKPRGGKVNHLDGKFPAERFFCLVGTNPRDYNLARLVVGASSDGLVRTENAYVEGAPRVYCHLSHSGHYGMVNSQEGYQNLVRFLFGDHRVILRMVPEALPLPPSIRREYDAKKRVRGSYLFECTMMPRGEAAIPLSDRRAEHASAVFRTYDELFYPERAGLQAPRYPVLGSIFLDSSKITSGKTMVFTVDLTVRSTDFWVDGILSKKRRIPDENLYRDKIVLKVVLNKDQWTLRYIESDDNWGENRGTGLSRDDAGPYIPLANRKGFRAKLYFDVTSW
>NC_009943.1|WP_012175389.1|2385795_2387526_-|AMP-binding-protein
MIKARIPAHNSHANLSGYVAARRSFKWSNAAAELGINSDAGVNIIAQSIDKWAARPDTAGQPAMIFHKGGHTDIYTFLQMRDISARWAGFFVKNGLEAGDCLMIFLPPCRAFFFAMAACARAGIVFCPVFASSGYSELESRLADIAPKAVLTDPGLVEMIPPERAAALKTLFLTTDAPGLYDNEIVVGDGPASLPADFSPRLVTPGTALYVVYTSGSTRPPKGIIHGHGDMVGIYASAKWVLDLKADDVLWTDADPAWVTGTVYAALAPWLCGVASVVSEAPAPSSAVNAYRTLEACRVTVWYTTPNTIRGLMEAGEDLPGRYNLDALRHIVTVGAPLMPDPFYWVRKHLGLSPHDNWWMSETGMICIANLPCLDIKPGAIGKPLPGIEAAVLDDSGWELPALSIGQLALKSGWPAMMVGLWGDRARYEGHFQNNWFLTGDIALQDEEGYFYHQGRLDDILKTRENRAIGPFEIEQALCGHPAVAEAAVIARGGDRDTGTSSIKAFVTLKPGNPASSRLNREIRMFLKAGVAPDIDVDEITFTEKLPRTRNGKLLRRVLRAWELGLPGGDAVSMED
>NC_009943.1|WP_012175390.1|2387522_2388560_-|histone-deacetylase
MSRKVAISRDDRFLLHKTGHAHPESPSRLASIYRMVDRHFAGTVTTMTPEPATLDQLELVHTPGHVKKILKTAEHKITSMAPDTPVSGHSYLAAWLAAGACMQGVDLLLSGACRAFFSLVRPPGHHALPDRATGFCLLNNLAIAARYARMRYNLERILIVDWDVHHGNGIHDIFYREPGVFYVSSHDLMLFPYSGEAGDTGEAGGRGFTLNMPLSRSFGDGDMAYIYRTVLTPVFRWYTPSMVMIAAGFDAHADDPLGRSAWSENAYFLLARLVCELADADHVPLLLSLEGGYDPGANAASAKAVLEALVSYAPAGPVPAPLDPNAADELLETVFTTHKPYGIVS
>NC_009943.1|WP_012175391.1|2388719_2390684_-|acetate--CoA-ligase
MTEFKKAYDAHLEEFQKNAHIKGMEAYQRLYRESLESPDTFWARQADHYLTWYKKWDTVLDYDFSEARIQWFGGGRLNASFNCLDRHLETREEAVAYYWEGDDTARAQAYTYGELYRRVNRFAAALRHKGVKKGDRVIIYLPMIIELPVAMLACARIGAVHSVVFGGFSAEAIANRINDCGAKVVITADGGFRSGKPVALKKNVDEALKKCPAVKTVIVVNHVDSGIFLTPGLEHWWHELIALPGLADEVEPEPMDAEDPLFILYTSGSTGKPKGVVHTHGGYLLYAAMTMEYVFDLHPGDIFWCTADIGWITGHSYILYGALVNGATSVMFEGVPSYPDFDRFWAIVEKYRVNKFYTAPTAIRSLAREGEAHVKKHDLSSLMLLGTVGEPINPEAWRWYHHHIGRDWCPVIDTWWQTETGGHMLTPLPGVAPVKPGSCAFPFFGIDPVIIDDAGEPVKHPDEEGLLCIRKPWPGMARTVFGDHERFISTYFSQAPGMYFTGDAARKDEDGYFWIIGRIDDVINVSGHRLGTAELESALVLHPHVAEAAVVGFPHAIKGQGIYAFVILKTGREPSDALKKELVAQVRREIGPIATIDVVQWAEGLPKTRSGKIMRRILKKIAANKLDELGDTSTIADESVIEKLIKDKVDVSKL
>NC_009943.1|WP_012175392.1|2390702_2392604_-|GNAT-family-N-acetyltransferase
MQARYWPDEYVRKKRTAKEALSVLKSGRRIFIGSSCGEPQHLVNTLVEEADRFSDLEIVRLMGLERSPITRLVNQDRLNSFHVRNIYQGAGDARHLAPSRPFITPINMSAVPDLFRKNQLPLHAALIQTSPPDDFGWMSLGISVDVGMAAATSADIVIVQVNARMPRVLGHSFIHVNDVDFVVECDEPLYTIPELPELESAHKIGRLVANLIEDGSTFQLGLGATPKAILLALSEKNDLGVHTQFVIDGIMDLVSRGVITNRRKGLNEGKIVASNAVGTENLYEFVHDNPSIEFFPADYVSNPGVIARHNKMVVVNMVKEMDLVGQASVDALPHNYFAGVSSIPDFVHGAAMAPGGRSILLIPSTSVDRKTSRIVPRLSGNVVVSMNDAGFVVSEFGAVNLFGKNLQERATAMISLAHPDFREALFEQARDMGLLAPGRKLSESLRGVYPAGLEETRTYDGQTVKFRPAKPVDDRRIQEHFYNLDKKDVIARFFQNKTCFFRDDLEGMYEIDYIKNLTILAVTGDFGFGEVVGIGAYMLESPGNMAEVAFSVSRPWQGKGIATVILHKLAYAAMGNGIAGLVAYTEPANTAMKKLFATLPYAIKTSRDTDMVTMTCYLNDEQPAPDAGPAQRD
>NC_009943.1|WP_012175393.1|2392861_2393659_+|response-regulator
MKTILIVDDTKLVRHFLAKKLEPYTSEFTVLTAENGKEALAQARSVKVDLVITDIEMPVMDGFELLAHLSNHHPETPVFVMTANGSPELEQRIDAMGSLKYFEKPIDVDLLLAAIREIFESNARGAVNGISLASFLQLIQMESKSCTLRVKSDGKSGRLYCLEGALIAAETGDLAAEKAVIEMICWESAVIEILELNRQKEKEIKQPLMNLLMEGSRRKDEMAATKKAKPAAPRPPRPARPPEPAKKKDDPAKDSDDIASLYQWD
>NC_009943.1|WP_012175394.1|2393732_2394740_-|hypothetical-protein
MALPQGYTVEKVFGQTGPLADGLVRFWVGNGALDEAGARQRVNHVACVLKNGNGDIRGVCSIVATALPLLGNRNIWVYRQFLPDTDRSYEAFVALFNGTREIAQNLLEKEGAQKAPTGIFVILPDEAMARRYPQAFWPETALFYAGRTSQGQHCRIAWLDEPGGWADVHRELEPGFSMEWVFGKVDEKLAEEIVSFWLAEGAIKEDRARQRVPEAAKIGRDPNGTLAGVCTLQYRQTPRLNNMPLWHVRAFVSKPHRRSSLAFCLLHTTVDDMQVLYDTGEERRAPGFFMEVENPSLRQLTHQGLWAYRRFAYLGDDARGNHLRVQYFKGAELNF
>NC_009943.1|WP_153304409.1|2394858_2395788_-|putative-2-dehydropantoate-2-reductase
MNFAIIGTGAVGGYYGGLLCRHGFEVHFLLRGDYVHVQEKGLTIDSKDGSFRLKQVNAYCRASDMPRCDVVIVALKTTANDRLAGILPHVVKPGGVVVALQNGLGVEKTIQEIVPDATVIGGLCFLCSNKIGPGHIHHLDFGSVRLGQYRADGAAAGITPELRQVADAFSAAGISVDLAEDLALARWQKLVWNMAFNGVTVVLNATTDQLMADPSALALVRGIMEEVVAGARACGHPLDENFIEIMIAATKNMVAYRPSMMLDFEAGRELEVEEIYRLPISMAAAAGVAMPRSETIALQLEFLDRRNRG
>NC_009943.1|WP_012175396.1|2395842_2396742_-|signal-peptide-peptidase-SppA
MFSRRHPFLFFILVLSAIVFGSATVISFVVGLYSGKPAFESGERVGIVEVKGVILSSEQVIEELKTFREEDAIRAIVVRIDSPGGAVGPAQEIFREIHKTAATKKVVASMGSVAASGGYYVASATEKIFANPGTLTGSIGVIMSYTNFQELMDKIGLLPVVIKSGKYKDIGSPVRPLEEREKRILQEFADDIHQQFIDDVAAGRNMDAGAVAKLADGRIYTGRKALELGLVDELGNLEDAVETVGRMAGIKGDIVQVYPERKTKFSLTELLTGSSAEELANTLMHGQALSAGYLYRPGL
>NC_009943.1|WP_012175397.1|2396864_2398679_-|30S-ribosomal-protein-S1
MVDNNTTQDADNIENEESGMESMEELMAMYDHTFKQFTEGEVVVGKVIAVDKDYVLVDIGYKSEGQININEFKNEKGEVNVKIYDDVEVMIEFWDEEHEKLVLSKDKAEKDKIWETIKDTFDNDGVVSGVIINRVKGGFSVDVGLQAFLPGSQADLRPIRNFDEMVGQTYDFKVLKYNRRRNNIVLSRRVLLEETLATKRAELMETLADGQVVEGIVKNITEYGVFVDLGGIDGLLHITDISWGRVRHPSELFTVGDNVTLKVLSFDLDKKKISLGMKQLTPDPWESAAEKYPVGVKTTGKVVSITNYGIFVELEEGVEGLIHVSEISWTRKIRHPSKVVNIGEEVDAVVLDIQPGNRRISLGMKQVEPNPWEVISEKYPVGTVIEGRIKNITDFGLFIGIDDDIDGLVHISDISWTKRIKHPSEIYKKGDLVRAVVLEIDKANERFSMGIKQLESDPWESVRDRYPIGTKVSGVVTNVTDFGIFVELEEGIEGLVHVSEVSTERIKTPVGQYEVGAELTARVMNVNADERKIGLSIKRLDVEDDKTLLKDYVDNSRGTTSAFGELLRENLQNGFTLQGNQDAAEKEAATSDKDDEDEPSDTDA

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Crispr_ID: NC_009943_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009943_6

2974011-2974116

Orphan

Consensus_repeat	Method
TGACCATCACCGAAGCCGGGTACAACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_009943_6

>merge|NC_009943|6|2974011-2974116|CRISPRCasFinder
TGACCATCACCGAAGCCGGGTACAACGGTATCAACATGGGCTGTTACGGCGACGACACCTTTACCAACTCCGGCACGTTGACCATCACCGAAGCCGGGTTCAACGG

>NC_009943|6|6|2974011-2974116|CRISPRCasFinder
TGACCATCACCGAAGCCGGGTACAACGG	TATCAACATGGGCTGTTACGGCGACGACACCTTTACCAACTCCGGCACGT
TGACCATCACCGAAGCCGGGTTCAACGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009943.1\|WP_012175883.1\|2990006_2990762_-\|polyprenol-monophosphomannose-synthase	unknown	unknown	gnl\|CDD\|133062
NC_009943.1\|WP_167320880.1\|2978800_2979766_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238141
NC_009943.1\|WP_012175881.1\|2984964_2987139_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99740
NC_009943.1\|WP_012175866.1\|2963758_2964442_+\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|131721
NC_009943.1\|WP_012175869.1\|2966724_2968092_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NC_009943.1\|WP_012175872.1\|2970884_2971784_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_041280555.1\|2991228_2992323_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012175864.1\|2962652_2962991_-\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
NC_009943.1\|WP_167320881.1\|2979815_2981024_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275116
NC_009943.1\|WP_012175879.1\|2982819_2983767_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_009943.1\|WP_012175880.1\|2983781_2984786_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_009943.1\|WP_012175870.1\|2968116_2969064_+\|divergent-polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|377404
NC_009943.1\|WP_012175867.1\|2964438_2965320_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225088
NC_009943.1\|WP_012175878.1\|2981066_2982737_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012175871.1\|2969564_2970473_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|234786
NC_009943.1\|WP_012175873.1\|2971867_2972884_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_009943.1\|WP_167320879.1\|2965283_2966675_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NC_009943.1\|WP_012175875.1\|2977357_2978479_+\|DUF1570-domain-containing-protein	unknown	unknown	gnl\|CDD\|284926
NC_009943.1\|WP_041280553.1\|2987224_2990023_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372986
NC_009943.1\|WP_083766606.1\|2961220_2962543_+\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635

Protein	Function_ID	Function_description	E-value
NC_009943.1\|WP_167320880.1\|2978800_2979766_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238141	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	0.000978786
NC_009943.1\|WP_012175881.1\|2984964_2987139_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	1.23147e-162
NC_009943.1\|WP_012175866.1\|2963758_2964442_+\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|131721	TIGR02673, cell_division_ATP-binding_protein_FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division].	3.45881e-94
NC_009943.1\|WP_012175869.1\|2966724_2968092_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.10803e-135
NC_009943.1\|WP_012175864.1\|2962652_2962991_-\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	3.42536e-53
NC_009943.1\|WP_167320881.1\|2979815_2981024_+\|radical-SAM-protein	gnl\|CDD\|275116	TIGR04311, Radical_SAM_domain_protein, putative metalloenzyme radical SAM/SPASM domain maturase. This model describes a family of radical SAM/SPASM enzymes largely from the deltaproteobacteria. The family is most closely related to radical SAM enzyme family regularly in archaea in the vicinity of tungsten-containing oxidoreductases. A single member of the family in archaea may correspond to multiple tungsten enzymes, e.g. five in Pyrococcus furiosus. Therefore, the lack of a conserved gene neighborhood for members of this family in deltaprotebacteria suggests members may be involved in the maturation of multiple metalloenzymes.	6.69078e-16
NC_009943.1\|WP_012175879.1\|2982819_2983767_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	9.09221e-67
NC_009943.1\|WP_012175880.1\|2983781_2984786_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	0.00111348
NC_009943.1\|WP_012175870.1\|2968116_2969064_+\|divergent-polysaccharide-deacetylase-family-protein	gnl\|CDD\|377404	pfam04748, Polysacc_deac_2, Divergent polysaccharide deacetylase. This family is divergently related to pfam01522 (personal obs:Yeats C).	4.12945e-100
NC_009943.1\|WP_012175867.1\|2964438_2965320_+\|ABC-transporter-permease	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	8.88509e-50
NC_009943.1\|WP_012175883.1\|2990006_2990762_-\|polyprenol-monophosphomannose-synthase	gnl\|CDD\|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	4.86437e-88
NC_009943.1\|WP_012175871.1\|2969564_2970473_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	3.08358e-92
NC_009943.1\|WP_012175873.1\|2971867_2972884_-\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.23915e-22
NC_009943.1\|WP_167320879.1\|2965283_2966675_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	1.42983e-43
NC_009943.1\|WP_012175875.1\|2977357_2978479_+\|DUF1570-domain-containing-protein	gnl\|CDD\|284926	pfam07607, DUF1570, Protein of unknown function (DUF1570). A family of hypothetical proteins in Rhodopirellula baltica. This family carries a highly conserved HExxH sequence motif characteristic of members of the Peptidase clan MA.	0.000912585
NC_009943.1\|WP_041280553.1\|2987224_2990023_+\|hypothetical-protein	gnl\|CDD\|372986	pfam14264, Glucos_trans_II, Glucosyl transferase GtrII. This family includes glucosyl transferase II from the Shigella phage SfII, which mediates seroconversion of S. flexneri when the phage is integrated into the host chromosome.	5.37219e-05
NC_009943.1\|WP_083766606.1\|2961220_2962543_+\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.18936e-58

>NC_009943.1|WP_012175873.1|2971867_2972884_-|IS5-family-transposase
MMQTGFFDWHERFEKLDRNGDPLLKLNQVVDWEMFRQPLEKIRHKERKSNAGARPYDVIRMFKILIIQSLYNLSDDRIEFQILDRISFMRFLGLGLGDRVPDAKTIWLFREQITEAGLIKPLFEKFDVCLRENGFLAQKGQIIDASIVAAPRQRNSREENERIKRGDIPEEWKEAKRRQKDTDARWTKKNGQNYYGYKNHISVDVKHKLIRDYEVTDAAVHDSQVFDQIIDESNSSRDVYADSAYRSEESVKRLKEEGFREHLQRKGCRHRKLTKREQRGNHTRAKTRSRVEHVFGVQAMMAGEMILRTIGIVRARAKIGLRNLAYNINRYSILGATG
>NC_009943.1|WP_012175872.1|2970884_2971784_+|hypothetical-protein
MKHKNRFSLLGIGLMALCLMFGTGPAVAGIVDDGAGTITVTGDNTDPITAADDTTVTVNTGATLTTPADAVTFTGDGNAVVNNGAITATEGNAITVTYDNDAETTQSHTVTNNGAITGVSGISFCTDPDLYPNEAGVANNDMVNNYGTIEATGAYLAGGIESEEEPAAVAMGEGADLLNNYEGAEITGSVLMGPGDDQIFNWGSMTSTYGAAIKMGDGSDTLENAGTITAEDSDCAGISMADGDDTVTNTGTIDIGTTSGAGVSMADGDDTFREPLKIHFLKKAVCGGKKFSDWDLSGK
>NC_009943.1|WP_012175871.1|2969564_2970473_-|50S-ribosomal-protein-L11-methyltransferase
MQWLEAGIVFETEDLFAQTAAELVCNIFYDLGLSGVVTEDPVPVSDHGVRGRVIGYLPVDEALEQTRADLEQMASGLSARHPVRCTLEFTPCDDQDWANAWKDHFFVQKIGRNIVVRPTWRDHVPEPGEVVIDLDPGMAFGTGTHPTTAMCLEMVEKHLAPGTAFLDVGTGSGILMIAAQKLGAKTVWGVDNDGVAVKIAAENLERNGIFAGGNACRIMRADLVTGVDRAFDLVTANILSEVIVALADDVGRVVVPGGLLVCSGIIEPKQAMVEAKLTACGFDIIERKTTDLWVCLVARRTP
>NC_009943.1|WP_012175870.1|2968116_2969064_+|divergent-polysaccharide-deacetylase-family-protein
MKKKRRTPATARKASAPSTPGHYLKILAGALLLVGILGAAALVGLVFLPDTPPDRTAGQPDVPARRPPFEVYPETDRLPDSPPCGPAHAPSARPKVAIIIDDMGYDRALAGRFVNLGIPLTFSILPHSPRGREIARTARQKGIEIMLHLPMEPDEYPAVNPGDGVLLTSMGPDELIARMENNLNDISHVAGVNNHMGSKMTADSARMYQVFSVLKKHGLFFVDSRTTPESQCRPAARLLQVPFAERDVFLDNDSDVAAIEAQIDRLIAVAKRNGKAVAIGHAHGSTCTALEKHLAALTQQVELVPASHLVCLVPR
>NC_009943.1|WP_012175869.1|2966724_2968092_+|S41-family-peptidase
MNNRKSRWIKILGVTSTLACLLIIGAGFSCTISAGSDETYKSLKIFSSVIETLEKEYVDPVDTTELIEAAIQGMVKSLDPHSEYLPSDAFKDFQSDTRGEFEGIGIVITMPKGVLTVISPIEGTPAFKSGIQPGDIITTIDDEPTADMELWEAVKRMRGEKGTSVTITIRREGVAEALSFDLVRAVIPIVSVKHAMLKPGYGYVWVTNFQANTTDELKTALAGLEADNGGDLKGLILDLRNNPGGLLDQAVAISDMFLDEGTILSVKEREKESNYNARPDKTRHDYPLVLLINGGSASASEIVAGALQDHKRALVIGTTSFGKGSVQTVQPLSDGSGIKFTIARYYTPSGTSIQTKGIVPDIEVKPGLLDSADEKEVPRLKEKDLKNHLEAAPMKDAPADDKTQAPAADDKKTREDLTNTRYGDLDPDLMLRDAQIVRALDALISYEIFSARHAK
>NC_009943.1|WP_167320879.1|2965283_2966675_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MLYLLATILKRVAPGVLACAVVAVMATAGHGEAVQTAEIRASLLNMRARPDRDATRVGVLKKGTQVTVLDDTGEWLKISYDNRAGYIRNRSDYVRLNPPPPARQIEELKEKARQIDREIETHKKEIAVYGQQEVELVAGLHDIDRSLNRSQTQIDAISAAVDAAARKIEENRKAARVLEQRIEKNRHQAARRLTALYKLELMGAMNLLGSAESMFSFLKTRRDIERICEHDAAVLEQYLSDKTRLSALTKELHAEKAEKETLESELKRQRVVLDKEKARRQRLLVDIREEGALRQATIASLKQAAKDLDKTIAALHEEMARAPVKGDGSFPRHKGLLKMPVNGRIISKFGKYKNPELNIVNFRSGIDIAARQGEPIHAVYQGQVLYADWFKGYGNMLILDHGDGFYTVYAHAQELFKKKGDPVATHEVIATVGETASMTGTSLYFEVRHRGTPEDPMKWLKTG
>NC_009943.1|WP_012175867.1|2964438_2965320_+|ABC-transporter-permease
MKFFALKRALRDLKNNMVLHSVTVIIIALSVLIVGTFTLFSSNAARVIRTWEKGVRLIVYIADGVPTADIDTLKNDISRMEGVTEVHFIDKQAALARLTERMKWQASLLESLDHNPLPDALEVWIDPARKKWETIEMLAIHIQSSHLVADVEYGQSWLKRFTGVLNLFRFSGVMMAMVFFLAAVFIVANTIRLVFYSRHEEFRIMRLVGATDRFIKAPFYLEGLIQGAVGAVLGIAVLYAVFTALTTSIDLDAVVNTFSIEFIPVKTLFIILLCSMFAGWLGCYISLRQFLKE
>NC_009943.1|WP_012175866.1|2963758_2964442_+|cell-division-ATP-binding-protein-FtsE
MESKAPIIRVFHVYKRYGAQTALGDITLDIGQGEFIFVTGASGAGKTTLLKLLYLGEPVSEGHILVDGMNLSRIRKDRIPFLRRLFGVIFQDYNLIPNRTVFENISLVLEVAGHRPALITKKVASVLRAVGLEDRMHAYPPSLSGGEQQKITIARAIAGDPKIILADEPTGSLDEESAEDIMNLLRTLHHRGATVLIATHDRDLVRGTPARRIHLSRGRLEQEAVES
>NC_009943.1|WP_012175864.1|2962652_2962991_-|histidine-triad-nucleotide-binding-protein
MSDCLFCKIAAGLIPCDKVYEDDDYVAFADINPQAPVHILVVPRRHIAKVADMAPADGNLVGGLFDVAAKICAEKGIADYRLVINNGAEAGQSVFHIHLHILAGRSFGWPPG
>NC_009943.1|WP_083766606.1|2961220_2962543_+|sensor-domain-containing-diguanylate-cyclase
MAQTTKTSQTSACETAVGNGTAAALVQGRIHMGKITALSKKAVVFDYMGAASSLEGLDARIDLLLHDSDTYIDDIACRIIEDRVIKKEGPPDGRCLRRCSARFIQLNADQQRRLAHHATWSSNREVTRREHLRQEIEKSEEKYKTILENIEEGYFEVDLAGHITFFNSSMLKMIGYTGGELLGMGYRSFMSSKTATRVFRSYNRAFRTGQLPTPFDWELVRKNGERLYVETSLSFIRDANNKIVGFRGIARDVSPRKKIEKELLYLASHDHLTGLYNRGALFEKLRETIAYAKRFRQRCALLFLDLDNFKTVNDTWGHETGDRVLKEAAFRLTGLLRETDYVCRHGGDEFTIILSNSKNMNPPKVAQKVIDAISRPFDVGENKIAAITTSIGISVYPDDSDTMEDLVKYADKAMYRAKDRKDRYICYNRGKFTKKLPLEI
>NC_009943.1|WP_012175875.1|2977357_2978479_+|DUF1570-domain-containing-protein
MGFFKSKAGAGLILLSVLMAGLAACAGPVWENRYRAAVARVTPAMTRHCISTPRYRVCSDGESVPLSDVAAFMEQAGTAFERVLGLDPPLQGEDPSAVWLYTDRDRYRKVASGLAFHSSIPGFFSPVVPSAVHVRWEKTEEPFPFSLLLHEGLHQQVDTRWRITSPRHNPGNRNQGHIGLPLWANEGLATYMESARMVNGRLITGGINKDRLAELAQKLEKKKVPDLAAVLSRPYGAPFDSGDYAMAWGLVYDLKHGAGRAHLPGAPDLLDFYLKALGTDLSDRYQSLLNNDPTDSAGPAVNFHTWNPVMAQRSLALFNQIVVGSGATPEAWARDWRQRMLALNTYAFAGSNAGIAVNATDPQGVLMEKMHRH
>NC_009943.1|WP_167320880.1|2978800_2979766_+|SGNH/GDSL-hydrolase-family-protein
MHMEDAGLGWKNMPGRHVHPGYSDLTGPVITTFLANGERITRPSSKTGGPYHVLLLGGSLTYGRALSDEDTFAWQLQEMLPEADIRNFGCDGYGTYQSLLLLEHLTTQSPAPDLVIYGFFDDHENRNVAAFSHLRMLAEYALQTRKTVAVPYCTIQHNGTLTRHPPTHYPFFSLREHSALLTLAQASLLKWRLSSRTRQKRVVTEKLLLQMKETCRKNGAEFIVIFLQANPPGYHQYRAFLKQHAIDSLDGRLPLTDRLRVPGEGHPNALANRFWAEVLVPIILDRIASEGTKPSVGKSLRGKAVGSNGIRPGTARATFGN
>NC_009943.1|WP_167320881.1|2979815_2981024_+|radical-SAM-protein
MMTLDQKKLYRLPWDQRNSPGGWIEITDRCDLSCRGCYRHTLEGDRSLETICSDVVALQQALNCETIAIAGGEPLLHPRLPEIVSFIAGRGLKPRLLTNGHCLTPELAATLKKAGLAAFHFHVDYQQNRPGWTGKDEQEHNTLRQHYADMVFQLGGVECGFYTTVYRSSLDQIPHIVRWLHKNPHKVQHLSLIVFRGLPDTPAITYHVNGRPVDIRQMRTRVADTHEITIRSEDVWRIINDHFPGSWPSAYTPGTAAPETFKFLVIPYIGSKKQIFGTAGPVTIKMGLWVLRLFSRKYAIAAREFGVGKKIFLFALIDGRMRQALKTYLKCVIRNPSVLAEKIYTQTINIQQPLEVISGKMNLCDGCVNYMLHEGELVHSCRLDEYRMFGGPLVPVQSDDPR
>NC_009943.1|WP_012175878.1|2981066_2982737_+|hypothetical-protein
MAAPQQPERKISVGFWVPLFFLFAYIVLGCAGALAYYINDDVGIIYILQQGEYHTPATHSVLGFILKWLYAWKENFFWYALFITMAYVAGIGRLFLFLAACRKLSYPVMFLVTAFVLLGLLPFQPNATILSLLLTMVAILPFLIKNIEQTSSVSFKTVLSSFIFLFVACLYRPPAVFLMTGCALGIHILLNIRRSAQPYPATESNGFWKRAGIITTMMIFAFLMHMFNLFLYNRSPEHSRLLEYNMYRHNFTDSSRYRYTPALQKLGISENDFHMMIFFMGIDSPPLHLENLKRVPPVPAFTPHRMGAGLKRAVYALTHGQALILTAFLLFTSIFSRRARIISGGTVLTLFLIALYTCRMVPRICLPFLTFGAVTVTALLGPGVHNIASRKRKPVFYMAIMMVLFAALWMTLKQQTALIDNQKKELAMTGPVWRFCEANNIQTAACWPGAVSNGRHILFTPLQWPETPRRLHLIGGWTGSYPKILQRLRSTYGHDIYAGLALPGTYHLVMNASTHASIFERFIQEHGPEGAAPQLLLVSGRTRLYRIVETGTDPVF
>NC_009943.1|WP_012175879.1|2982819_2983767_-|glycosyltransferase-family-2-protein
MPEKTPLVSVIVPVWNDGPCVGRAADRIHTVLKRTCASYEVIFVDDGSSDNSFEEICRACAAHAHTMGIRLARHAGQHAALRAGLAKASGEVLVNFDVDMQGVPEDIPRLVEKVGEGFDLVCGWRTERREAWHRRVFSFFLNRWVNRHTGRFLHDNGCFKAINRKVADRIGQNDSSRFLTALVPALADRVTEVPVSWRKREQGRSRYALRETASMVLDFFLVYPVLPFVWFFWGGLTVLMAGGAVLGIGLCRLTDSGYWQPSWLTWTGGALLALGGMLFAVWTWAHRGIHRRKKISNVSLLLIERIVGKTDGNNG
>NC_009943.1|WP_012175880.1|2983781_2984786_-|GNAT-family-N-acetyltransferase
MSLEIVPLTENDRPILEQVIALDEHNPYRHYPGADRKKRRLVFATEIWDQYVRGPLFLWAALWNGTPVGLAGFQGLPWDSDQFGKKMGRFWPVSLAPLDAVVAYRVAEKLLGTVLAEARKEGMQHLSCRVFGDNFAVIHALERNNFLLMDTLVTWLYQPGRMRAPDFRCRHSVRLYEDADREAVLTLARNADFQSRFNRDPWLSEENVRAMHETWATNCCRKIMADEVLVAQSGGRVCGFLGYRKHRIFMAQTGKELWGSGLTAVSPKTPGAYVSLLHAAVTRRFAGSRASVQPDLPDLMDFETQLSNRSILKVWQAFGFRMVRFGYNYHNGNL
>NC_009943.1|WP_012175881.1|2984964_2987139_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MIKNILVTGGAGYLGTVLCEKLLDKGFTVLCLDRLCFGNGPVRHMKNNARFSLVQADILEMNAHSNIFTDIEAIIHLAGLSDDVSADLDRDLTRAVNYEASLNLARMAKNCGVKKFLFASTCSVYGANGDTMVNETSPLQPLSWYARLKADTERDVLALAGSGFFPAALRLATLYGVSPRMRFDLAVNRMALHACATNAVSVFGEGLQWRPFLHVSDAADAFVHCLGLPDDTLSGRTYNLGTTAENYRILDVARLIQKHTQDARINMVPGTPDRRSYRVDFSDFAQLGWHAEHTIEKSLPELLAAIRSTSDPGDARYYNLDTMQKLLQTPAIESGMPIRSTALPFCLPSIGPEEEAEVLAVLRSGWLTRGPRTTALEDRMKKFLGCGHAICVNSCTAALHVSLTALGIGPEDEVITSPVTWPSTANVIVHTGATPVFADIDPATLNIDVKEIEKKITARTRAIIPVHIAGRPCPMDEIHALAKSHGLFVIEDAAHAIGAAYKDRKIGTISDTTCFSFYPIKNMTTGEGGLVATDNDALAEKIRIYSLHGINTDAWQRQAHGSQAQGEVIFPGFKYNMSDIQAAIGLPQLDRLEWAIEQRKNISEQYDDAFTGLPGLSRPRAIDGVRDACHLYIIILDVEKLAIDRNQFRKALLMENIHTGVHFFPLHQQPYYRNRFGFKKEDFPHAAYIGDRIVSLPLYPKMTRQDVDTVIQAVTRLIRFYQKA
>NC_009943.1|WP_041280553.1|2987224_2990023_+|hypothetical-protein
MLLKRHAIHVVIVALPFLMFHWMAPFVSDLAPGLDYIRYRIWPQAELLFAVRSGTFPLYTHWVMGGMPSVAGVGLAQGYLPFPYVLALLPGYGTGSALQWNLLLDLFILAAAHVAMFRFLRKTGLAGGLAFFISMVTVYSPRILLSFIYGAALHTWAAQILLCSAIGCYYLHATRWKGPLFIIAAAYWVINSGNPPEAYYGMLAATLFVLLLPYAMASHEPGNKVDTLKARMAFWGKTGAFIVTAILLSAAYLLPLYFDMVRKTWFPHQSYEQISYFLETPIGLISNFFLPLRPLFAANFSGTPLYLAVMLVPVLFLLRVKLPKFIAVLWVLVIIIGLHALGPLTPVHRLAWEYLPLASSIRTPTRICMMLPVLFILPLVWLFTTTPSRGNTPLKKQPLFLLAMAAIVLTLLYLLMVPRAVKMSIGETPKINLQHIPSWVEPASTVLGLASLVMAGLYAACRRFKKETVLLLCIAGVLHLGILLRYGPFPASRIEPGDLRTYTELAAEKRQTINAFPNHFYPIGQFIYMDVITQAKNYMVEPFLGKIYRTWTSVNSRDAAYDLLNRGRTPDMVVMENYSEPQTPTATLSSPDLPPDTVNLTYSSCNRLIFRTQAALPCVFATSLAHTGHWRAWVNKKPAPIYRSNGYACAVSIPKGASTVEFRYWSPAAFWGMAISCATLALLGIIAAAFGVKKTGRRVLAGLVAAGALGLFFLWHDSLYSGKNLHTRYEWISPPVHRPQNLAFGKPTQMSSSSRSHTFTHDSACAVDGDTSVASCCLTHFEPNPAWEVDLKCVRKIEEILLHITLQGEYYDKVLPHTPGNTKQIWEKGILVVKKQPELFNGLPLTVAISTDRTDWQATLIHAIDTRAPLHLKLDTPVDARYIRIFASGKSRLCLNEVEVYGAFSAPPACDNNGQRGDGQLKGAAHHVTNGS
>NC_009943.1|WP_012175883.1|2990006_2990762_-|polyprenol-monophosphomannose-synthase
MAGGAGFRKGLSMNGDGYGNLLIFIPTYNEAGNIGEMAARLGALNLHPDILFIDDASPDCTGRILDKLAAANSAIRVIHRPCKKGIGSAHLEAIAFAYKQGYSLLVTMDADFTHPPEAVPVLLLAAREADVVVGSRFVETGGFEGWSRWREGLSRFGHWATQRLLNLPHDATGAFRVYRLNHIDQGLFSPIQAFGYAFFFESLFVLAKKGVKIVDVPVVVQPRRYGTSKMGRRHLAESLWTLARLWITTRL
>NC_009943.1|WP_041280555.1|2991228_2992323_+|hypothetical-protein
MNRSPSRVRNHLLHRLCIGPALCLCLVLCTSPALFAGMAVMTDSQLSKVEGGDIVKIDISDPGEFYGGANNITIVRFSSDIYVENYGELGVMKMGNYVRTNAELGNLAGLGSEAPIIRYSTDYGTDLDRSPGKVRTNSGHPAPGQTTEAPYVGAVGTYINNFGLSTGPDWTEWDVNWEKVRMGGEPDNPLQVYGVIMRAEFSDFGTTNQELRRLVVGSNKLFGYSGARPLVTSGWLNSSMADLNRSIAALGDAGNAVFQLQRDCMMDQYWRISSLNFNPNDVGDHGSFRDFFFNTDLNTVNAGNGDFAGTFRMQNHGFFVSMDLTDRRYSGWNLIGGVNEYQYWPNFEDAGGNYANVISFTHNP

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Crispr_ID: NC_009943_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009943_7

3543998-3544147

Orphan

Consensus_repeat	Method
GACGTTTCCGCGCGTGCGTGGGTCATGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_009943_7

>merge|NC_009943|7|3543998-3544147|CRISPRCasFinder
GACGTTTCCGCGCGTGCGTGGGTCATGGGTCAATTTGTTGTGCTGTGAGTTGGAGCGGATAGACGTTTCCGCGCGTGCGTGGGTCATGGAAAACCTAAAAAAGCCTAAAATTCAAGCCGCTCTTTTTCCCCGCGCGTGCGTGGGTCATGC

>NC_009943|7|7|3543998-3544147|CRISPRCasFinder
GACGTTTCCGCGCGTGCGTGGGTCATGG	GTCAATTTGTTGTGCTGTGAGTTGGAGCGGATA
GACGTTTCCGCGCGTGCGTGGGTCATGG	AAAACCTAAAAAAGCCTAAAATTCAAGCCGCTC
TTTTTCCCCGCGCGTGCGTGGGTCATGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_009943.1\|WP_012176360.1\|3538854_3539694_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370579
NC_009943.1\|WP_012176365.1\|3544557_3544848_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012176363.1\|3543455_3543944_+\|DUF4468-domain-containing-protein	unknown	unknown	gnl\|CDD\|379681
NC_009943.1\|WP_012176367.1\|3545621_3545897_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012176373.1\|3552589_3553585_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012176372.1\|3551922_3552573_+\|cobalamin-B12-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|239021
NC_009943.1\|WP_012176358.1\|3536618_3537887_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012176356.1\|3535210_3535519_-\|PQ-loop-repeat-containing-protein	unknown	unknown	gnl\|CDD\|367864
NC_009943.1\|WP_012176361.1\|3539974_3541375_+\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|179545
NC_009943.1\|WP_167320889.1\|3550702_3551878_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239548
NC_009943.1\|WP_052294315.1\|3542126_3543167_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012176369.1\|3548098_3549349_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379306
NC_009943.1\|WP_041280627.1\|3544382_3544571_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012176368.1\|3546204_3547434_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NC_009943.1\|WP_012176357.1\|3535534_3535867_-\|DUF1232-domain-containing-protein	unknown	unknown	gnl\|CDD\|225876
NC_009943.1\|WP_012176366.1\|3545170_3545587_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012176370.1\|3549530_3550562_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NC_009943.1\|WP_012176354.1\|3534752_3534953_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_041280625.1\|3538375_3538858_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012176353.1\|3533927_3534713_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350609

Protein	Function_ID	Function_description	E-value
NC_009943.1\|WP_012176360.1\|3538854_3539694_+\|hypothetical-protein	gnl\|CDD\|370579	pfam09603, Fib_succ_major, Fibrobacter succinogenes major domain (Fib_succ_major). This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.	8.04196e-08
NC_009943.1\|WP_012176369.1\|3548098_3549349_+\|ATP-binding-protein	gnl\|CDD\|379306	pfam13635, DUF4143, Domain of unknown function (DUF4143). This domain is almost always found C-terminal to an ATPase core family.	8.24868e-59
NC_009943.1\|WP_167320889.1\|3550702_3551878_+\|hypothetical-protein	gnl\|CDD\|239548	cd03465, URO-D_like, The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.	8.43714e-26
NC_009943.1\|WP_012176357.1\|3535534_3535867_-\|DUF1232-domain-containing-protein	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	6.63189e-07
NC_009943.1\|WP_012176372.1\|3551922_3552573_+\|cobalamin-B12-binding-domain-containing-protein	gnl\|CDD\|239021	cd02070, corrinoid_protein_B12-BD, B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.	6.48014e-62
NC_009943.1\|WP_012176370.1\|3549530_3550562_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	1.56354e-35
NC_009943.1\|WP_012176363.1\|3543455_3543944_+\|DUF4468-domain-containing-protein	gnl\|CDD\|379681	pfam14730, DUF4468, Domain of unknown function (DUF4468) with TBP-like fold. A large family of (predicted) secreted proteins with unknown functions from human gut and oral cavity. Typically forms a N-terminal domain with FMN binding domain at the C-terminus. Experimentaly determined 3D structure of this domain shows a variant of a TATA box binding - like fold, but no detectable sequence similarity to other proteins with this fold.	1.30207e-20
NC_009943.1\|WP_012176356.1\|3535210_3535519_-\|PQ-loop-repeat-containing-protein	gnl\|CDD\|367864	pfam04193, PQ-loop, PQ loop repeat. Members of this family are all membrane bound proteins possessing a pair of repeats each spanning two transmembrane helices connected by a loop. The PQ motif found on loop 2 is critical for the localization of cystinosin to lysosomes. However, the PQ motif appears not to be a general lysosome-targeting motif. It is thought likely to possess a more general function. Most probably this involves a glutamine residue. Family members are membrane transporters since two members, cystinosin and PQLC2, transport cystine and cationic amino acids, respectively, across the lysosomal membrane. The 2nd PQ-loop of cystinosin hosts the substrate-coupled H+ binding site underlying its H+ symport mechanism, suggesting that PQ-loop repeats have functional significance. It is thus likely that PQ-loop-containing proteins act as a family of membrane transporters. Some transport cystine and cationic amino acids, respectively, across the lysosomal membrane. Others transport lysine and or arginine across the lysosomal membrane in order to maintain the acidic homoeostasis.	1.15008e-06
NC_009943.1\|WP_012176361.1\|3539974_3541375_+\|redoxin-domain-containing-protein	gnl\|CDD\|179545	PRK03147, PRK03147, thiol-disulfide oxidoreductase ResA.	1.11393e-07
NC_009943.1\|WP_012176368.1\|3546204_3547434_-\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.63108e-35
NC_009943.1\|WP_012176353.1\|3533927_3534713_-\|hypothetical-protein	gnl\|CDD\|350609	cd14727, ChanN-like, ChaN is an iron-regulated, heme-binding protein. This family represents a domain found in ChaN, a heme-binding/iron-regulated lipoprotein from Campylobacter jejuni. ChaN, possibly involved in the uptake of heme-iron, contains a pair of cofacial heme groups situated between two ChaN monomers. A single tyrosine residue contacts the heme-bound iron atom while the heme-binding regions of each monomer also have contacts to the heme in the complementary monomer. ChaN presumably associates with an outer membrane-associated receptor, ChaR. Campylobacter jejuni is an important cause of food-borne illness, and is dependent on iron uptake from the host. ChaN like proteins are related to the Tiki/TraB like family of proteases. Proteins containing this domain also include protein reticulata-related from Arabidopsis which may play a role in leaf development.	0.0040295

>NC_009943.1|WP_012176363.1|3543455_3543944_+|DUF4468-domain-containing-protein
MKKLFIIFLSCIFLFSCVFATQRQECEKTFFKVFEAPGYTKDQIYKGMKIWVAENFRSAKSVVELDEPEQGLLIGNGVVSYPCKGMGCLSVGEWRVPFTMRIDVKDNKFRLSFSNLQISAQGYAEQPIYYQAHVDKIKPVLLAFGDEIITALNQNKKTTSDW
>NC_009943.1|WP_052294315.1|3542126_3543167_-|hypothetical-protein
MSIKGIFKRLIFGASAEPGEQTRSTKTVRNEYTFSERDKLVAQKCAGDLLRVFTESLNIANKSKNRETRESRLRVARDTLTELRTMEKKFPFLHLENLEAVETSIAEVEAETREMSAAQPKPKIITTIEESQNNKIGTWKDNQDVVHGLQFSATLQLRTPLRVLLRHGEIHTNINTKPPKIIKEMWEGIWVFKTKTFRELGCDVDEVAPGTHASDVGLVLPADYLPFLIAIRRVVELDEPIENRIKKLREMPMASDWKTYIEKHGGIEKIIRQFFPEFIDTIPKISAAIDELSELGLETPNRIAAAPDETLLSIKGIGQSKLKTIRDYCAGITKNRDADRVENVIR
>NC_009943.1|WP_012176361.1|3539974_3541375_+|redoxin-domain-containing-protein
MKKLSTIPVQLSIACAVILLSLSTARAQEIHLHVPHFAGSHYEWKIFQGKQELTVRSGEISPDGRVILTMPDPYQDYRGMTRWLLKKGGGLDMIYTGKGFSVECLSEKPNSDNIIYTGNPENDYLESHHSRQQTILGKLGAVNHLLQVYAPDENLHKIALDEQTHLRQAFSQVQADRAESLLYAARFGKIVDFTKGIADKIYDNPEDHTTYFNDFVTHTLDFKDLYTSGHWDQVLHHWVMMNIRSGKGDHAFIERMESAMSRMNQDNILAAFAEKAVPLLVEKGKDDLLPAIADHLENRPAVQAALSGSVKNMMASVKMLTGKKAPDLVFHAPVRTQTKTSAEDIIIKTGNLDAAHTILLFYQGECPLCENTLIDLANKYQQLKEQNVRVIAISADMTDQGFEDKLIYHQWPDNYCDFTGMAVENFTKYGVLGVPTLFLLNQEGVVVKKTAMMDELMEILDKKKPF
>NC_009943.1|WP_012176360.1|3538854_3539694_+|hypothetical-protein
MKFSRNLLTSIRYTCLLAVILIGFVAIVGTGGGGGGGGGGATTPATTTDSDNDDDDGGTGDTTPNASCGAYVAPGVWKEFDCYNLAAIGKTTGDDPFTPSWRLIGGYWQWGRKGPSSSQWYDTNTSNFAHGPTGPGSSEANDGAISAWDASDAPDGALSDAFKTSNDPCPAGYRVPTESQWTGVDANNAQSIVGSSWSESITNYSSAYLFGDDLMLPAAGLRYDYSGSLYRRGSHGYYWSSTEYSGGIRSAWTLYVRSSNAATSSHYRSYGGSVRCIAE
>NC_009943.1|WP_041280625.1|3538375_3538858_+|hypothetical-protein
MINTRQIIVGITFLFIGALVYLFDRPADMTYLVYTNPFNLSFYGLFPPVFGFLGNTLPAFLHVAAFILLTVGVSGWGRKTYLPVCLFWLIVDAGFELGQKYSTNIAKAIPGWFDDIYLLENTKNYFVFGTYSSLDLVAILLGGIAAYGILIYTEIKRGEK
>NC_009943.1|WP_012176358.1|3536618_3537887_+|hypothetical-protein
MFNRLVGFSLICSFLLVTTACTTPKYKMPIEIPDRDVGLQIQDPIPTQINICMPTLVSNKIHAYQSGRPHYGYDIEIDEKDLTDSFQKALTQTVQQSNLYQSVAAPDTEDREHSLNTKIWIENIRYYVPTPLTEKVSEVKVEYIVTSKNGKILASGTVAENGVDNDIGFFKDVLKQSINAVQDALSKAAARIPVELAENDPFVQVAKADADPNYVISYKPTKPVQQEEGQQLQESEQRLAELMTQQTRQNIAHLNELIDSGNKDEFMAFIEQYPDLADHIENPAYRLLYTGPKELRIGTIAKMLEHGFGDKVIVAKINGVKEPYRDFSFDELVILKKLKFSDDIIAAMLNVTTELNREQARIAREDALLEEQRKGAQETGQNQSYIANQPQSDQNAFVNAVGQEAGRALGREAVKELLDRLF
>NC_009943.1|WP_012176357.1|3535534_3535867_-|DUF1232-domain-containing-protein
MSQTTDVSGGDVISSSERSMFIPVFLFILALLYVISPIDPIPDVPVIGQIDDALVAAIATLNLLQSWLEETSIFLFGLRGLVKWLLIFIGIIAFSVMGMAVLTLVKVVTG
>NC_009943.1|WP_012176356.1|3535210_3535519_-|PQ-loop-repeat-containing-protein
METGSVFELMGATGSFVLCVSAVPQIIKTYRLKCAEGLSGTYLTVLTAGLSLIMVYSVYTGDRIFIFGNAISLLLTIIMAGLWYKYGDRHKRKMIHDDLQSS
>NC_009943.1|WP_012176354.1|3534752_3534953_-|hypothetical-protein
MDEDKKDVLEQSPPPLDKKYRVRFKAYDQEGNELPNFSFKDLPEGSVLKIGNKSFPMRKDRKKKGV
>NC_009943.1|WP_012176353.1|3533927_3534713_-|hypothetical-protein
MIKQSLVLIVIIVIIVPSIYADHYTTDPTAYVLEKFKTHNIVLLGTRHQQPQILSFISGLIPKLLDSDVSYICLEIPSDQQESIDHYIKTGEGLSDIQLWSSIDCPAYRNLLQTIYLGGAVIPKAIDLPLSRFHESISRDQYMAQVISGLYQNTPGCRILVVLGNLHVLKQLEWEEGVGSEDKPVVQYLEADLPGVPLFSIGQVIDYSPDTCDFTRSFTAIPGAVAVDCTTRFAGWKLGILDPVAIKETEAYRMLDGLIVY
>NC_009943.1|WP_041280627.1|3544382_3544571_-|hypothetical-protein
MNTIKKRLAKLETQKDRQQFEPFHIIRWGSTKGPEREYYVGEDGFVQVHDEVHQGQEVVNHE
>NC_009943.1|WP_012176365.1|3544557_3544848_-|hypothetical-protein
MKETVKKKPGKGNKGKASSTPPPGGKRKTAIRVKTLADLRRFMARTLNELDADKIVDGKARVLGYLCSVLMGIIKDGDLESRILKLEQEASKNEHN
>NC_009943.1|WP_012176366.1|3545170_3545587_-|hypothetical-protein
MAKLPGKIWIDREMIESKAYLSLSGFSPQLLILVLGKRQFEKQGRKGKEKWVLVNGKNINIPYTEFKGKYGITQPKLTRAIDQLLEKGFLSVVHPGGLYRHDKAVYALSDNWLRWKPGMTFQARERETVKRGFCDPKK
>NC_009943.1|WP_012176367.1|3545621_3545897_-|hypothetical-protein
MESVFQELASKWPSSFVARTEIKHFTGGIISEKYLANLDCQGKGPKGRIRTGRKISYPVASFIEWLEARSAVVPDRTRKTEGDAISEHGKE
>NC_009943.1|WP_012176368.1|3546204_3547434_-|site-specific-integrase
MAGKWVKTTFPGVRYKEHPTRKNGVKRDQYFTIRYKLAGKDREEGLGWASENWTAAKAYDRLKELKENRKTGEGPQTLAEKRAIEDKRKDADKQARQLAEKENVTFGRFMAETYLPQCKRDKKPTTYAMEEALYRVHLAETIGNLPFGKIAAFHVERVKKAMADKKKAGRTIQYALQVTRQVFNMARKRGVYTGENPTSAVKWPKLDNMKMRYLSIDEAEKLFDALAAKSHNLHDMALLSLHSGLRFGEIAKLTWSCVNWKAGTLAILDAKTGSRTAYLTTRAKAMLKNREEGAPNELIFQKRSGLDGSIARASKTFSRVVKELGLNQGITDRKQKVTFHTLRHSYATHLYESTHDLYLTQKSLGHTTSTMTQRYAKMTENRLREGSAALEAAFKTNGQKKKKNAGQVL
>NC_009943.1|WP_012176369.1|3548098_3549349_+|ATP-binding-protein
MKKDPLHPRFLIPRVTEALADSPVVLIHGPRQSGKTTLARLVGDAAGYVYISFDNDVQRAAAEFDPVGFVADLPDKVILDEIQRVPGLFTSLKAAVDSRRQAGRFILTGSANVLLVPKLADSLAGRMEILRLHPLAQCELAGRDSGFLSILLGQGFKKSSIGSRQGRDLAERIAAGGFPAALARTASRRRAAWYRDYIDTLVQRDVRDLSAIRSLEALPRLLALAAGQTAHLVNVAELSGPFQLSRPTIRDYMTLLERLFLLEQLPPWHNNRLSRLIKTPKLHLCDTGLACALLGVDGPSLWGDRELYGQLLETFVYQELRRQSGWQEEPVTFYHYRDKEGLEVDVVLEFGGRQLAGVEVKASSTVGASDFRGLIRLQKSVGKRFEAGVVLYDGDAIVSFGKGLFAVPISMLWEKT
>NC_009943.1|WP_012176370.1|3549530_3550562_-|AraC-family-transcriptional-regulator
MGICLKTEPIIPQHRSMHATRILVDLAEKRGIAVNEILEEAGLDYADLDNPDKWISFDQELGIYLRIAELISDPGFGLLLGQNYHLGQLGKWVMAVNCCTTAMEAFKTAFTLIDLAPVYFQYILETKGGTAFFRFREIFDPGKYRRFIHEAHTVGFYYICRDIMKEPLPLTEVRFAYPRPEYADEYKKIFNCPVIFNAKETQALFAGRYLEKALPCANVLTKNLYEKECRHLLQDLDRFSTTTGRVKQALFSYDNGFPGMAEMARRFNMSPQTLGRRLAAEGTDYKTVSRQVREKRACNLLQTSDLPIEEIAARLGYSDTANFYRAFKSWTGKTPLGFRRKET
>NC_009943.1|WP_167320889.1|3550702_3551878_+|hypothetical-protein
METMHPVERIYKTFEGKPVDRVPCFCAMMESRTANEIIGKPFISEEKFANFPVNQFLLNNLPEKLTRPIVRGTLIRTIKRRNLAQIEMGFDMIWAYYDDSWHYPDAKTIVFTTGSIYNMIPDGFGSMTYMYRGPGINSPQEFDAWPYWPDTDEMAHRVYKYYKKFLAQHGDKTCVMTQGFFGGLQESMNWTFGIAKVPLWIKKHPDYTKRFLDILEEINFKVHTAMIDAGSPVILTTDDFAFKTGPFMSPKMVEDLFGERYKRLFKNIHQRGAKAVLHSCGDNTKLFDVFAGWGADGLHAFENTSNVDIFSIKKSHGDRFTIMGGVGIDYLLTERSKDEEIVDKVKELISRLGPGGRFIIGPTHSEDSMPAHKLRVMLDAAKKYGSYPIQG
>NC_009943.1|WP_012176372.1|3551922_3552573_+|cobalamin-B12-binding-domain-containing-protein
MKECIAVVQDAVIHMKDDVIIDAVKKCLAEGLSPIQIIEEGLSGGLDVVGQKFEAGEYYLAELIMAGDVVTEATGMLKDKMDPGDMGKKGKVILATVKGDVHDIGKNIVAMILSAQGYEVVDLGVDVASEKIVAAVSETGIQLLGLSILLTTMVPAIKEVVDLLTAKGLRKKVKIAIGGACCSQQLADEMGVDAFGESAVAAVDIFDRFKKELEIA
>NC_009943.1|WP_012176373.1|3552589_3553585_-|hypothetical-protein
MNRFRWSGRNFLTWLAVIVWAFLWQGCAHHLTLPDTPQTIYVAGEWPEDRVRQQAPVFMAYDYTDTNNRIGRPAIGGEGKDDDEVWIDTDHPAVYVMRRTFTTARATYTNLIYRVHFPRVPYFHLTAGNNVGLMVVVTLDEANRTVLVTTVHTCGCYKAFIPTDYLPADALPEGWDVNQRQSVYGEELPSRLAFTGVENPALLIHLRPEVHRVMDVEVVSADQLQGEAFLPLAMEVDAMDALDRLPSGDGTATSFYYAQGWRKGHVKGTIKPLEMMFMSLISLDLFVGSDKIYADPAIWDNPFYTSLKPWRRDDSDMWDFARFLDYWGWRL

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Crispr_ID: NC_009943_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_009943_8

3590108-3592576

TypeI-E

I-E,II-B

Consensus_repeat	Method
ATGTTCCCCACACGTGTGGGGATGAACCG	PILER-CR
ATGTTCCCCACACGTGTGGGGATGAACCG	CRISPRCasFinder
ATGTTCCCCACACGTGTGGGGATGAACCG	CRT
ATGTTCCCCACACGTGTGGGGATGAACCG	PILER-CR

40 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_009943_8

>merge|NC_009943|8|3590108-3592576|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
ATGTTCCCCACACGTGTGGGGATGAACCGCAACACCGTTTTTACAAGCGCCTGAATTTTGTATGTTCCCCACACGTGTGGGGATGAACCGCCCTTCCTTCATCAGCTCCACTTCTGTTTTTAATGTTCCCCACACGTGTGGGGATGAACCGCGGTAACGCTATAAGTGATTAAATCGTTAGTAATGTTCCCCACACGTGTGGGGATGAACCGACAACATGATGATACTGCACCCCCTGACTCTTATGTTCCCCACACGTGTGGGGATGAACCGCTGACCGGAGAACTGGAACTGGGCGAAGCAACATGTTCCCCACACGTGTGGGGATGAACCGGAAGATGCTGACCGCGGCGTTCTTTTCTGCCAATGTTCCCCACACGTGTGGGGATGAACCGGACACGGCTTCTGATTGGCTGACTTGGCTGCCATGTTCCCCACACGTGTGGGGATGAACCGTATTCGTAATTCCGCGCGATATCGGCGGAGGCATGTTCCCCACACGTGTGGGGATGAACCGCGAACGAGGGACAGCGCGAATTTCATATTCTAATGTTCCCCACACGTGTGGGGATGAACCGGGTTCCAGAGGGATTATTTTTTTCACCAGATAATGTTCCCCACACGTGTGGGGATGAACCGCGGGTAAACGAAAAAACAGTTAAAACAGAAATATGTTCCCCACACGTGTGGGGATGAACCGGGATATGAAAATATTAAAAGTTTTGTATGGGAATGTTCCCCACACGTGTGGGGATGAACCGCCACGTTTTCAACCTTTACGACACCGGTTTTGATGTTCCCCACACGTGTGGGGATGAACCGCGGCGGATGACCAGTGTTCCACGGCCAGATACATGTTCCCCACACGTGTGGGGATGAACCGTATAGCGGCGGTACAAACCCAGATAGGCGTTAATGTTCCCCACACGTGTGGGGATGAACCGTATCGCGGATACCGTGGAGGATGGATCGGATCATGTTCCCCACACGTGTGGGGATGAACCGTGATAATCACAAAGCAGACTGACCGGGCCATCATGTTCCCCACACGTGTGGGGATGAACCGAATCCACCATGGCCTCGTCTTCCTCCCGCAGGATGTTCCCCACACGTGTGGGGATGAACCGCTGTCCAGGTGTATCTCGATGAGGTGCGGGCGATGTTCCCCACACGTGTGGGGATGAACCGCCCTCCGTCCAGAGCATGACGGCGGACCAGATATGTTCCCCACACGTGTGGGGATGAACCGGTATTCGGAGGCGGCTTTGTCGGAACCGAACTATGTTCCCCACACGTGTGGGGATGAACCGTTATAGCCGGGAGCAGCGGCCCCCATCATAACATGTTCCCCACACGTGTGGGGATGAACCGCAAACATAACCAGATCCCGGCCGAGGCGTTTGATGTTCCCCACACGTGTGGGGATGAACCGCCCTGGGAAAAGATTATGCGTCGGCGGCCGAGATGTTCCCCACACGTGTGGGGATGAACCGGAATAAGGAAAAACCGGTTTTGGTTTTCGATCATGTTCCCCACACGTGTGGGGATGAACCGCCGGGGCCAGTAATCCAGCAAACATCATTTATATGTTCCCCACACGTGTGGGGATGAACCGGCTCGGTCAATACCCGGGCGGCTGTCGTTCTTATGTTCCCCACACGTGTGGGGATGAACCGGTGGCCTCTGGCGTGTCACCAAGGGTGCACGCATGTTCCCCACACGTGTGGGGATGAACCGCCTGAGTCATATATTCGGTGGCTTTTCGCAGGATGTTCCCCACACGTGTGGGGATGAACCGGTGTTTATTTTATTTAAAATTTCTGTCATTTTATGTTCCCCACACGTGTGGGGATGAACCGTTTGCCGTTGGGTTTGCCACCTGTCAGAGAAAATGTTCCCCACACGTGTGGGGATGAACCGCATATCAGGTTGCTGTCGAGGTCGTTGATGGTATGTTCCCCACACGTGTGGGGATGAACCGAGAAAAGAACCTTATTTTTAAATATTTTGTTTATGTTCCCCACACGTGTGGGGATGAACCGAGAAAAGAACCTTATTTTTAAATATTTTGTTTATGTTCCCCACACGTGTGGGGATGAACCGCTCATGATCGCCGTGCGGGCCGCGCCGTAGCTATGTTCCCCACACGTGTGGGGATGAACCGGGAAATGAAGAACAGAAAACGGAACCCCCGGAATGTTCCCCACACGTGTGGGGATGAACCGCGACCGACGACGTGGATCCACTGGCCACGGATATGTTCCCCACACGTGTGGGGATGAACCGTACGGGACGCTCAACTCCCAGGATGCCATCGGATGTTCCCCACACGCGTGGGGATGAACCGGGCGACGGCCCGAAAACCGCCGCCCTGCAGTGATGTTCCCCACACGTGTGGGGATGAACCGGCCCCGGGTTGGCCGCCGCTGAGGATCTGGCGATGTTCCCCACACGCGTGAGGACGTGGAT

>NC_009943|8|2|3590108-3590929|PILER-CR
ATGTTCCCCACACGTGTGGGGATGAACCG	CAACACCGTTTTTACAAGCGCCTGAATTTTGT
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTTCCTTCATCAGCTCCACTTCTGTTTTTA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGGTAACGCTATAAGTGATTAAATCGTTAGTA
ATGTTCCCCACACGTGTGGGGATGAACCG	ACAACATGATGATACTGCACCCCCTGACTCTT
ATGTTCCCCACACGTGTGGGGATGAACCG	CTGACCGGAGAACTGGAACTGGGCGAAGCAAC
ATGTTCCCCACACGTGTGGGGATGAACCG	GAAGATGCTGACCGCGGCGTTCTTTTCTGCCA
ATGTTCCCCACACGTGTGGGGATGAACCG	GACACGGCTTCTGATTGGCTGACTTGGCTGCC
ATGTTCCCCACACGTGTGGGGATGAACCG	TATTCGTAATTCCGCGCGATATCGGCGGAGGC
ATGTTCCCCACACGTGTGGGGATGAACCG	CGAACGAGGGACAGCGCGAATTTCATATTCTA
ATGTTCCCCACACGTGTGGGGATGAACCG	GGTTCCAGAGGGATTATTTTTTTCACCAGATA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGGGTAAACGAAAAAACAGTTAAAACAGAAAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GGATATGAAAATATTAAAAGTTTTGTATGGGA
ATGTTCCCCACACGTGTGGGGATGAACCG	CCACGTTTTCAACCTTTACGACACCGGTTTTG
ATGTTCCCCACACGTGTGGGGATGAACCGCGGCGGATGACCAGTGTTCCACGGCCAGATACATGTTCCCCACACGTGTGGGGATGAACCG	TATAGCGGCGGTACAAACCCAGATAGGCGTTA
ATGTTCCCCACACGTGTGGGGATGAACCG	TATCGCGGATACCGTGGAGGATGGATCGGATC
ATGTTCCCCACACGTGTGGGGATGAACCG	TGATAATCACAAAGCAGACTGACCGGGCCATC
ATGTTCCCCACACGTGTGGGGATGAACCG	AATCCACCATGGCCTCGTCTTCCTCCCGCAGG
ATGTTCCCCACACGTGTGGGGATGAACCG	CTGTCCAGGTGTATCTCGATGAGGTGCGGGCG
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTCCGTCCAGAGCATGACGGCGGACCAGAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GTATTCGGAGGCGGCTTTGTCGGAACCGAACT
ATGTTCCCCACACGTGTGGGGATGAACCG	TTATAGCCGGGAGCAGCGGCCCCCATCATAAC
ATGTTCCCCACACGTGTGGGGATGAACCG	CAAACATAACCAGATCCCGGCCGAGGCGTTTG
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTGGGAAAAGATTATGCGTCGGCGGCCGAG
ATGTTCCCCACACGTGTGGGGATGAACCG	GAATAAGGAAAAACCGGTTTTGGTTTTCGATC
ATGTTCCCCACACGTGTGGGGATGAACCG	CCGGGGCCAGTAATCCAGCAAACATCATTTAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GCTCGGTCAATACCCGGGCGGCTGTCGTTCTT
ATGTTCCCCACACGTGTGGGGATGAACCG	GTGGCCTCTGGCGTGTCACCAAGGGTGCACGC
ATGTTCCCCACACGTGTGGGGATGAACCG	CCTGAGTCATATATTCGGTGGCTTTTCGCAGG
ATGTTCCCCACACGTGTGGGGATGAACCG	GTGTTTATTTTATTTAAAATTTCTGTCATTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	TTTGCCGTTGGGTTTGCCACCTGTCAGAGAAA
ATGTTCCCCACACGTGTGGGGATGAACCG	CATATCAGGTTGCTGTCGAGGTCGTTGATGGT
ATGTTCCCCACACGTGTGGGGATGAACCG	AGAAAAGAACCTTATTTTTAAATATTTTGTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	AGAAAAGAACCTTATTTTTAAATATTTTGTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	CTCATGATCGCCGTGCGGGCCGCGCCGTAGCT
ATGTTCCCCACACGTGTGGGGATGAACCG	GGAAATGAAGAACAGAAAACGGAACCCCCGGA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGACCGACGACGTGGATCCACTGGCCACGGAT
ATGTTCCCCACACGTGTGGGGATGAACCG	TACGGGACGCTCAACTCCCAGGATGCCATCGG
ATGTTCCCCACACGCGTGGGGATGAACCG	GGCGACGGCCCGAAAACCGCCGCCCTGCAGTG


>NC_009943|8|8|3590108-3592576|CRISPRCasFinder
ATGTTCCCCACACGTGTGGGGATGAACCG	CAACACCGTTTTTACAAGCGCCTGAATTTTGT
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTTCCTTCATCAGCTCCACTTCTGTTTTTA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGGTAACGCTATAAGTGATTAAATCGTTAGTA
ATGTTCCCCACACGTGTGGGGATGAACCG	ACAACATGATGATACTGCACCCCCTGACTCTT
ATGTTCCCCACACGTGTGGGGATGAACCG	CTGACCGGAGAACTGGAACTGGGCGAAGCAAC
ATGTTCCCCACACGTGTGGGGATGAACCG	GAAGATGCTGACCGCGGCGTTCTTTTCTGCCA
ATGTTCCCCACACGTGTGGGGATGAACCG	GACACGGCTTCTGATTGGCTGACTTGGCTGCC
ATGTTCCCCACACGTGTGGGGATGAACCG	TATTCGTAATTCCGCGCGATATCGGCGGAGGC
ATGTTCCCCACACGTGTGGGGATGAACCG	CGAACGAGGGACAGCGCGAATTTCATATTCTA
ATGTTCCCCACACGTGTGGGGATGAACCG	GGTTCCAGAGGGATTATTTTTTTCACCAGATA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGGGTAAACGAAAAAACAGTTAAAACAGAAAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GGATATGAAAATATTAAAAGTTTTGTATGGGA
ATGTTCCCCACACGTGTGGGGATGAACCG	CCACGTTTTCAACCTTTACGACACCGGTTTTG
ATGTTCCCCACACGTGTGGGGATGAACCG	CGGCGGATGACCAGTGTTCCACGGCCAGATAC
ATGTTCCCCACACGTGTGGGGATGAACCG	TATAGCGGCGGTACAAACCCAGATAGGCGTTA
ATGTTCCCCACACGTGTGGGGATGAACCG	TATCGCGGATACCGTGGAGGATGGATCGGATC
ATGTTCCCCACACGTGTGGGGATGAACCG	TGATAATCACAAAGCAGACTGACCGGGCCATC
ATGTTCCCCACACGTGTGGGGATGAACCG	AATCCACCATGGCCTCGTCTTCCTCCCGCAGG
ATGTTCCCCACACGTGTGGGGATGAACCG	CTGTCCAGGTGTATCTCGATGAGGTGCGGGCG
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTCCGTCCAGAGCATGACGGCGGACCAGAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GTATTCGGAGGCGGCTTTGTCGGAACCGAACT
ATGTTCCCCACACGTGTGGGGATGAACCG	TTATAGCCGGGAGCAGCGGCCCCCATCATAAC
ATGTTCCCCACACGTGTGGGGATGAACCG	CAAACATAACCAGATCCCGGCCGAGGCGTTTG
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTGGGAAAAGATTATGCGTCGGCGGCCGAG
ATGTTCCCCACACGTGTGGGGATGAACCG	GAATAAGGAAAAACCGGTTTTGGTTTTCGATC
ATGTTCCCCACACGTGTGGGGATGAACCG	CCGGGGCCAGTAATCCAGCAAACATCATTTAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GCTCGGTCAATACCCGGGCGGCTGTCGTTCTT
ATGTTCCCCACACGTGTGGGGATGAACCG	GTGGCCTCTGGCGTGTCACCAAGGGTGCACGC
ATGTTCCCCACACGTGTGGGGATGAACCG	CCTGAGTCATATATTCGGTGGCTTTTCGCAGG
ATGTTCCCCACACGTGTGGGGATGAACCG	GTGTTTATTTTATTTAAAATTTCTGTCATTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	TTTGCCGTTGGGTTTGCCACCTGTCAGAGAAA
ATGTTCCCCACACGTGTGGGGATGAACCG	CATATCAGGTTGCTGTCGAGGTCGTTGATGGT
ATGTTCCCCACACGTGTGGGGATGAACCG	AGAAAAGAACCTTATTTTTAAATATTTTGTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	AGAAAAGAACCTTATTTTTAAATATTTTGTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	CTCATGATCGCCGTGCGGGCCGCGCCGTAGCT
ATGTTCCCCACACGTGTGGGGATGAACCG	GGAAATGAAGAACAGAAAACGGAACCCCCGGA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGACCGACGACGTGGATCCACTGGCCACGGAT
ATGTTCCCCACACGTGTGGGGATGAACCG	TACGGGACGCTCAACTCCCAGGATGCCATCGG
ATGTTCCCCACACGCGTGGGGATGAACCG	GGCGACGGCCCGAAAACCGCCGCCCTGCAGTG
ATGTTCCCCACACGTGTGGGGATGAACCG	GCCCCGGGTTGGCCGCCGCTGAGGATCTGGCG
ATGTTCCCCACACGCGTGAGGACGTGGAT

>NC_009943|8|2|3590108-3592576|CRT
ATGTTCCCCACACGTGTGGGGATGAACCG	CAACACCGTTTTTACAAGCGCCTGAATTTTGT
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTTCCTTCATCAGCTCCACTTCTGTTTTTA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGGTAACGCTATAAGTGATTAAATCGTTAGTA
ATGTTCCCCACACGTGTGGGGATGAACCG	ACAACATGATGATACTGCACCCCCTGACTCTT
ATGTTCCCCACACGTGTGGGGATGAACCG	CTGACCGGAGAACTGGAACTGGGCGAAGCAAC
ATGTTCCCCACACGTGTGGGGATGAACCG	GAAGATGCTGACCGCGGCGTTCTTTTCTGCCA
ATGTTCCCCACACGTGTGGGGATGAACCG	GACACGGCTTCTGATTGGCTGACTTGGCTGCC
ATGTTCCCCACACGTGTGGGGATGAACCG	TATTCGTAATTCCGCGCGATATCGGCGGAGGC
ATGTTCCCCACACGTGTGGGGATGAACCG	CGAACGAGGGACAGCGCGAATTTCATATTCTA
ATGTTCCCCACACGTGTGGGGATGAACCG	GGTTCCAGAGGGATTATTTTTTTCACCAGATA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGGGTAAACGAAAAAACAGTTAAAACAGAAAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GGATATGAAAATATTAAAAGTTTTGTATGGGA
ATGTTCCCCACACGTGTGGGGATGAACCG	CCACGTTTTCAACCTTTACGACACCGGTTTTG
ATGTTCCCCACACGTGTGGGGATGAACCG	CGGCGGATGACCAGTGTTCCACGGCCAGATAC
ATGTTCCCCACACGTGTGGGGATGAACCG	TATAGCGGCGGTACAAACCCAGATAGGCGTTA
ATGTTCCCCACACGTGTGGGGATGAACCG	TATCGCGGATACCGTGGAGGATGGATCGGATC
ATGTTCCCCACACGTGTGGGGATGAACCG	TGATAATCACAAAGCAGACTGACCGGGCCATC
ATGTTCCCCACACGTGTGGGGATGAACCG	AATCCACCATGGCCTCGTCTTCCTCCCGCAGG
ATGTTCCCCACACGTGTGGGGATGAACCG	CTGTCCAGGTGTATCTCGATGAGGTGCGGGCG
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTCCGTCCAGAGCATGACGGCGGACCAGAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GTATTCGGAGGCGGCTTTGTCGGAACCGAACT
ATGTTCCCCACACGTGTGGGGATGAACCG	TTATAGCCGGGAGCAGCGGCCCCCATCATAAC
ATGTTCCCCACACGTGTGGGGATGAACCG	CAAACATAACCAGATCCCGGCCGAGGCGTTTG
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTGGGAAAAGATTATGCGTCGGCGGCCGAG
ATGTTCCCCACACGTGTGGGGATGAACCG	GAATAAGGAAAAACCGGTTTTGGTTTTCGATC
ATGTTCCCCACACGTGTGGGGATGAACCG	CCGGGGCCAGTAATCCAGCAAACATCATTTAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GCTCGGTCAATACCCGGGCGGCTGTCGTTCTT
ATGTTCCCCACACGTGTGGGGATGAACCG	GTGGCCTCTGGCGTGTCACCAAGGGTGCACGC
ATGTTCCCCACACGTGTGGGGATGAACCG	CCTGAGTCATATATTCGGTGGCTTTTCGCAGG
ATGTTCCCCACACGTGTGGGGATGAACCG	GTGTTTATTTTATTTAAAATTTCTGTCATTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	TTTGCCGTTGGGTTTGCCACCTGTCAGAGAAA
ATGTTCCCCACACGTGTGGGGATGAACCG	CATATCAGGTTGCTGTCGAGGTCGTTGATGGT
ATGTTCCCCACACGTGTGGGGATGAACCG	AGAAAAGAACCTTATTTTTAAATATTTTGTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	AGAAAAGAACCTTATTTTTAAATATTTTGTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	CTCATGATCGCCGTGCGGGCCGCGCCGTAGCT
ATGTTCCCCACACGTGTGGGGATGAACCG	GGAAATGAAGAACAGAAAACGGAACCCCCGGA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGACCGACGACGTGGATCCACTGGCCACGGAT
ATGTTCCCCACACGTGTGGGGATGAACCG	TACGGGACGCTCAACTCCCAGGATGCCATCGG
ATGTTCCCCACACGCGTGGGGATGAACCG	GGCGACGGCCCGAAAACCGCCGCCCTGCAGTG
ATGTTCCCCACACGTGTGGGGATGAACCG	GCCCCGGGTTGGCCGCCGCTGAGGATCTGGCG
ATGTTCCCCACACGCGTGAGGACGTGGAT

>NC_009943|8|3|3590962-3592515|PILER-CR
	CAACACCGTTTTTACAAGCGCCTGAATTTTGT
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTTCCTTCATCAGCTCCACTTCTGTTTTTA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGGTAACGCTATAAGTGATTAAATCGTTAGTA
ATGTTCCCCACACGTGTGGGGATGAACCG	ACAACATGATGATACTGCACCCCCTGACTCTT
ATGTTCCCCACACGTGTGGGGATGAACCG	CTGACCGGAGAACTGGAACTGGGCGAAGCAAC
ATGTTCCCCACACGTGTGGGGATGAACCG	GAAGATGCTGACCGCGGCGTTCTTTTCTGCCA
ATGTTCCCCACACGTGTGGGGATGAACCG	GACACGGCTTCTGATTGGCTGACTTGGCTGCC
ATGTTCCCCACACGTGTGGGGATGAACCG	TATTCGTAATTCCGCGCGATATCGGCGGAGGC
ATGTTCCCCACACGTGTGGGGATGAACCG	CGAACGAGGGACAGCGCGAATTTCATATTCTA
ATGTTCCCCACACGTGTGGGGATGAACCG	GGTTCCAGAGGGATTATTTTTTTCACCAGATA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGGGTAAACGAAAAAACAGTTAAAACAGAAAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GGATATGAAAATATTAAAAGTTTTGTATGGGA
ATGTTCCCCACACGTGTGGGGATGAACCG	CCACGTTTTCAACCTTTACGACACCGGTTTTG
ATGTTCCCCACACGTGTGGGGATGAACCGCGGCGGATGACCAGTGTTCCACGGCCAGATACATGTTCCCCACACGTGTGGGGATGAACCG	TATAGCGGCGGTACAAACCCAGATAGGCGTTA
ATGTTCCCCACACGTGTGGGGATGAACCG	TATCGCGGATACCGTGGAGGATGGATCGGATC
ATGTTCCCCACACGTGTGGGGATGAACCG	TGATAATCACAAAGCAGACTGACCGGGCCATC
ATGTTCCCCACACGTGTGGGGATGAACCG	AATCCACCATGGCCTCGTCTTCCTCCCGCAGG
ATGTTCCCCACACGTGTGGGGATGAACCG	CTGTCCAGGTGTATCTCGATGAGGTGCGGGCG
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTCCGTCCAGAGCATGACGGCGGACCAGAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GTATTCGGAGGCGGCTTTGTCGGAACCGAACT
ATGTTCCCCACACGTGTGGGGATGAACCG	TTATAGCCGGGAGCAGCGGCCCCCATCATAAC
ATGTTCCCCACACGTGTGGGGATGAACCG	CAAACATAACCAGATCCCGGCCGAGGCGTTTG
ATGTTCCCCACACGTGTGGGGATGAACCG	CCCTGGGAAAAGATTATGCGTCGGCGGCCGAG
ATGTTCCCCACACGTGTGGGGATGAACCG	GAATAAGGAAAAACCGGTTTTGGTTTTCGATC
ATGTTCCCCACACGTGTGGGGATGAACCG	CCGGGGCCAGTAATCCAGCAAACATCATTTAT
ATGTTCCCCACACGTGTGGGGATGAACCG	GCTCGGTCAATACCCGGGCGGCTGTCGTTCTT
ATGTTCCCCACACGTGTGGGGATGAACCG	GTGGCCTCTGGCGTGTCACCAAGGGTGCACGC
ATGTTCCCCACACGTGTGGGGATGAACCG	CCTGAGTCATATATTCGGTGGCTTTTCGCAGG
ATGTTCCCCACACGTGTGGGGATGAACCG	GTGTTTATTTTATTTAAAATTTCTGTCATTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	TTTGCCGTTGGGTTTGCCACCTGTCAGAGAAA
ATGTTCCCCACACGTGTGGGGATGAACCG	CATATCAGGTTGCTGTCGAGGTCGTTGATGGT
ATGTTCCCCACACGTGTGGGGATGAACCG	AGAAAAGAACCTTATTTTTAAATATTTTGTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	AGAAAAGAACCTTATTTTTAAATATTTTGTTT
ATGTTCCCCACACGTGTGGGGATGAACCG	CTCATGATCGCCGTGCGGGCCGCGCCGTAGCT
ATGTTCCCCACACGTGTGGGGATGAACCG	GGAAATGAAGAACAGAAAACGGAACCCCCGGA
ATGTTCCCCACACGTGTGGGGATGAACCG	CGACCGACGACGTGGATCCACTGGCCACGGAT
ATGTTCCCCACACGTGTGGGGATGAACCG	TACGGGACGCTCAACTCCCAGGATGCCATCGG
ATGTTCCCCACACGCGTGGGGATGAACCG	GGCGACGGCCCGAAAACCGCCGCCCTGCAGTG
ATGTTCCCCACACGTGTGGGGATGAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_009943.1\|WP_012176398.1\|3583768_3585358_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_009943.1\|WP_012176403.1\|3588766_3589696_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_009943.1\|WP_012176410.1\|3597232_3597712_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380027
NC_009943.1\|WP_012176405.1\|3592701_3592875_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_041280629.1\|3580728_3580926_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012176408.1\|3595759_3596125_-\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012176411.1\|3597822_3598110_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NC_009943.1\|WP_012176404.1\|3589697_3590015_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_009943.1\|WP_012176412.1\|3598303_3599791_+\|DUF4403-family-protein	unknown	unknown	gnl\|CDD\|379578
NC_009943.1\|WP_012176401.1\|3587069_3587849_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	pfam09704_cas5_CAS-I	gnl\|CDD\|187776
NC_009943.1\|WP_041280630.1\|3585950_3587060_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_009943.1\|WP_012176399.1\|3585354_3585933_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_009943.1\|WP_012176407.1\|3595171_3595450_-\|putative-addiction-module-antidote-protein	unknown	unknown	gnl\|CDD\|188241
NC_009943.1\|WP_083766631.1\|3587848_3588721_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_009943.1\|WP_153304456.1\|3593100_3593784_+\|hypothetical-protein	unknown	unknown	unknown
NC_009943.1\|WP_012176406.1\|3593879_3595043_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NC_009943.1\|WP_012176413.1\|3599787_3601143_+\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|223963
NC_009943.1\|WP_012176397.1\|3581072_3583772_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_009943.1\|WP_012176396.1\|3577946_3580385_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212667
NC_009943.1\|WP_012176409.1\|3596114_3597095_-\|serine-protease	unknown	unknown	gnl\|CDD\|132866

Protein	Function_ID	Function_description	E-value
NC_009943.1\|WP_012176398.1\|3583768_3585358_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	3.53034e-158
NC_009943.1\|WP_012176403.1\|3588766_3589696_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.8078e-154
NC_009943.1\|WP_012176410.1\|3597232_3597712_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|380027	pfam17805, AsnC_trans_reg2, AsnC-like ligand binding domain. This entry contains an AsnC-like ligand binding domain.	4.75652e-40
NC_009943.1\|WP_012176411.1\|3597822_3598110_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	9.1263e-46
NC_009943.1\|WP_012176404.1\|3589697_3590015_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.2063e-63
NC_009943.1\|WP_012176412.1\|3598303_3599791_+\|DUF4403-family-protein	gnl\|CDD\|379578	pfam14356, DUF4403, Domain of unknown function (DUF4403). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 455 and 518 amino acids in length. There is a single completely conserved residue W that may be functionally important.	1.30695e-85
NC_009943.1\|WP_012176401.1\|3587069_3587849_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.88032e-47
NC_009943.1\|WP_041280630.1\|3585950_3587060_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.0053e-117
NC_009943.1\|WP_012176399.1\|3585354_3585933_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	2.5563e-35
NC_009943.1\|WP_012176407.1\|3595171_3595450_-\|putative-addiction-module-antidote-protein	gnl\|CDD\|188241	TIGR02684, conserved_hypothetical_protein, probable addiction module antidote protein. Members of this strictly bacterial protein family are small, at roughly 100 amino acids. The gene is almost invariably the downstream member of a gene pair. It is a predicted DNA-binding protein from a clade within Pfam helix-turn-helix family pfam01381. These gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module. [Mobile and extrachromosomal element functions, Other].	1.55428e-32
NC_009943.1\|WP_083766631.1\|3587848_3588721_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	4.04643e-42
NC_009943.1\|WP_012176406.1\|3593879_3595043_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.7557e-37
NC_009943.1\|WP_012176413.1\|3599787_3601143_+\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|223963	COG1032, COG1032, Fe-S oxidoreductase [Energy production and conversion].	2.03107e-21
NC_009943.1\|WP_012176397.1\|3581072_3583772_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	8.48639e-141
NC_009943.1\|WP_012176396.1\|3577946_3580385_+\|Hsp70-family-protein	gnl\|CDD\|212667	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family. HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs.	5.7438e-57
NC_009943.1\|WP_012176409.1\|3596114_3597095_-\|serine-protease	gnl\|CDD\|132866	cd07228, Pat_NTE_like_bacteria, Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.	3.66425e-73

>NC_009943.1|WP_012176404.1|3589697_3590015_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTEAVPPRLRGRLAVWLLEIRAGVYVGNVSRRIREMIWEQIAALAEDGNVAMAWATPNESGFDFQTYGKNRRIPINYDGLRLVSFLPPDQGTNETTTAL
>NC_009943.1|WP_012176403.1|3588766_3589696_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTDSHFVPLKPIPIKDRVSMVFVYYGQIDVKDGAFVVVDDVNGERKHIPVGSVACIMLEPGTRISHAAVKLAATTGTLLIWVGEAGVRLYSAGQPGGARSDKLLYQAKLALDEQLRLKVVRRMFEIRFGEKPPERRSVDQLRGIEGARVRKIYELMAKQYGVPWKGRRYDPKDWESGDVINKCLSAATSCLYGVTEAAILAAGYAPAVGFIHSGKPLSFVYDIADIYKFDTVVPVAFRVAAKKPAHPDREVRIACRDAFRETRLLQKIIPGIEDILSAGGIKPPPPPEDAQPPAIPEPESIGDQGHRSA
>NC_009943.1|WP_083766631.1|3587848_3588721_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYFSRVRIQPDIHQETQMAKVLADSVYNIHRLLWDLFPGQKQRNFLYREEIAREQLGYQGGARGESLYYLVSSSAPSSQSPFFAVETRRYEPQLQPDEALRFELRANPVVTKNGKKHDVVMDAQQTFLKLLCEELGLLSHLQGTPEKKEYKNVLLTHGGQRLDSRLTDLLDGDYRYAERLDQKLTPREKLEWALRAEIDNTLDEWMAKQGKQNGFTIVKDTHGNLKLQNSAYQWHALTGKAAKGKKSGFSAVDFTGDLVVSDVEAFKKSLFNGIGRSKAFGCGLMLVKRI
>NC_009943.1|WP_012176401.1|3587069_3587849_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MGYLLFRLYGPMASWGEIAVGETRHTANYPGRSAIIGLMAAALGIKRSETENQQALDQGCLIAVEARSHGSLLRDYHTTQVPDSVGGFVYRTRRDELIIGKPRLGTILSSREYRQDALAVSAVRVLPGARYELQTIKTHLEQPRLHVYLGRKSCPLSAPMNPQIDKTSRNFHEAFQAYAHQPLLPVHHSGKEGLSKRDAYWLGLANDRHYYWEGEPSEFSDTIDLSRVQTRIRHDQPLSRTRWQFSPRQEHYWYFSGGE
>NC_009943.1|WP_041280630.1|3585950_3587060_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRFIQLHLLTAYPPANLNRDDMGSPKTAKMGGYERLRVSSQCLKRSWRTSDAFQAAMAGHIGKRTKEMGLKVYEILRKKDVTHKDAIAWSKSIAGVFGKLKELSKKEKDGLKDLDKKDREKKELVELEIEQLAFFDTGEEQGIIDLANTIVKRTEGPTDQELELLRDRMQAVDIALFGRMLASKPSYSIEAACQVAHSISVHPVVIEDDYFTAVDDLNNGLEDMGAAHIGETRFAAGLFYSYVCINRDLLIENLGGDKALAAKAIRALVEAAVKVAPEGKQNSFASRAYASYVLSEKGDQQPRSLSVAYLKPINHRENENFISDSIKALVEQKDCFDSVYGKCADGRYEINVPKKEGTLADLLDFVSQ
>NC_009943.1|WP_012176399.1|3585354_3585933_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSEYYYLDAESCQLLQRWHHWLDNNRGDRARLRRAERPEDVLLTEAFFNFLKQMPNSWQEQKPIFSSAAVAGLLSHVKADHQVVSKGYQPKDEKKSKKMASFSEQLATSIKGDRGAMSELRFQQLQKSRTTDEFYRRMVRAIRLLDGRVNILSLANDIIQWHKEHDREFDRKPANRLAVRWATDYFSVLPNN
>NC_009943.1|WP_012176398.1|3583768_3585358_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLTDKWIPVIRENGPDKIAPWQIVETENPVMEINAPRPDFQGALYQFFIGLLQTCFAPEDEDQWRQYWENMPKPDELKKVFEKNTIKKNFELYNPDGPAFMQDFDLSDGEEKHISFLLIEAPGGKTQKDNLDHFIKRGHVNSLCESCTASALFTLQLNAPAGGQGNRVGLRGGGPLTTLLVPEEANSNLWHKVWLNILNKEDNEEFFSPGPLDDSVLPWLGPTRISDKQGVATTPEDCHALQMYWGMPRRIRLRANEEKGNCDICGHPSNVLYKTYKAKNFGIDYVGAWVHPLTPYRFDTDHQKPPLSLKGQKGGLGYRHWLGLALQDTETGNKAATTVQFYNDERGPTLFNNQSAALWCFGFDMDNMKARCWYDTHFPVLILNKQQKENLIAWAVELIGSARATVKILRDAVKSAWFKRPGDAKGDMSAIDRQFWETTEPGFYKLLDDMAKLPSATRMAPPEIYANWFRMIKESMFDIFEKATLYNSPEEVDLKQIVSAKQSLTKTFYNNSVIKNLKAKAKEEVAQ
>NC_009943.1|WP_012176397.1|3581072_3583772_+|CRISPR-associated-helicase/endonuclease-Cas3
MNTEKSYYRYWGKAEKDGSGYHLLPYHCLDVAAIGWFLLNPEKPLCMELAKRLDIKPALLRVFFVFCLALHDLGKFARAFQGLKPELAPDLVMANPQMSYSERHDSLGFLLWRKVLSKQDKDNGDLNWFNKIEACIKIVTGHHGMPPKQSGINLNTFFENEDEEAAKNFMVDICNLFLSDFDPSPLFDNIFQKQLKTVSWQLAGITVLADWIGSNTEYFDYYGCDKQLDLKAYWDTIALPSAQKAVSAMPEPATTRNFESITDLFPIIHKPTPLQEYAANEPLSDGPQLFILEDVTGAGKTEAAIVLAHRLLSAGLADGLYVALPTMATANAMYERLGRVYRRLYDQNNTPSLILAHGARDLSEAFRQTVAVPENKSDGVAYDKPYDSEDEELSASAYCNAWLADNRKKALLADVGVGTLDQALLAVLPVRHQSLRLLGLRRKVLLVDEVHAYDSYMQKLLDTLIEAHARQGGSVILLSATLPKKMRLQLVSAFYRGLGKEAPEIHNTAYPLATHAPASSDLEKHIDTREEVKRTVSVIRLDTEDAVFEQVQSAVNKGRCVCWIRNTVKAARESHTALSQSEWMDKHHLHLFHSRFAMIDRQRIENDVLKRFGDQSGHEDRRGHVLIATQVVEQSLDLDFDVLITDLAPIDLIVQRAGRLCRHIRDGKGNRLLDHDAKDQRSKPTLYVYSPDPTKGADENWLKNHQKGTQAVYPHIGQLWLTAKLLCKGRFAMPGDARELIENVYGNEPEDEVPEEIRLASNIAIAQNQAQAGMAGLNVLKINKGYTWSSGDWDEEIRIPTRLTEEESITVALAKHKDGKLMPYAANIHNSWAMSIVKIPEWEWKKARGKITQEFQKIIEELKAEVKFLRWLEVFPLTEETQHYYKAAGGWQPQGGENP
>NC_009943.1|WP_041280629.1|3580728_3580926_+|hypothetical-protein
MTPIIPIKAFEKRRRHLKRYPSIYRPVTFRKVLKFQIRYPQQQENWLIAPRLIHGKKGDYPTFEE
>NC_009943.1|WP_012176396.1|3577946_3580385_+|Hsp70-family-protein
MDILKTFGGPFVPAKNNLLRTLSIDLGTTNSTIAESVCVPGYPPMCKVLKITQPLENGDTVTSALVPSVVAFLEDEENSTVLVGEGAKQLRCEMDTLELVTGENFFHDTKNDMGLNKTYALAPAFLNHAHKVAGHVLSFLVEAAEQGAVAPYQVLTVTVPASFQINQRNDTLRAARMDNLHLEACDLMEEPTAALVDFLMSDQRRFSLPREGKATCLVFDFGGGTCDVSVIAVSGNGPNRPLSVSELSVSRYHRLGGGDIDAAIVHEVLIPALAEENVFDLSDLTWENKKLELEPRLLATAETLKIDLCRKIRRSIDQCEYAEVNQAMFGVTAPAITCWINNDEEGLDFSAPSLSAAQFEKLLEPFLDTDFLYARETEYRLTQSIFSPIEDALDRAGISPKEVDFCLLSGGSILIPQVRAAMESYFGKNKTGGFDDPEQIQTAVARGAAWNTIFKAVTGRPLVRPVLHDGIDLETNDGSRYPLVDPGTPLPFPSDDTWQRLDLEVPPADRLLVDQLRIRLISHTDGRHLLNEIWNLPTAACAGAGILLEYRVTAGKQFECRAFLKSSPKAVFAQAVENPLVNVVNPGATRLKIEETEEKLRLCFGGTEKNVDDYVNLARWYEELNQKEKAIHCLHTALRKKNRPSSYISNLMGIYYEDLKDHQRAEKAYLEAIKDDRDWSSPAFNLALLYRNTKRHDEALAMLDQAIEKDDEDRAPCLALKATVLNRMDRKSEANETAVQALNAFSPFPKLDNWALGWYETTARLVKDDKALAAAEAERKRRKHNPDTEPDDTTPRPVVKNNIILFQRVNAA
>NC_009943.1|WP_012176405.1|3592701_3592875_-|hypothetical-protein
MDFLIGTLFIVGFVAFFIAVGLVAIMAVELGRATIENDRKVVTPLILAGVLALFLGD
>NC_009943.1|WP_153304456.1|3593100_3593784_+|hypothetical-protein
MAGNNTAVHTGSATAQKTPEVKACLQNTDAITRKKKKASLTITDNKYLVQLFKTFDRSSLLHEIGHIFLNKLQQRVQESRWFCLVSLRVEQGGLKRLYVPSEEGIASSLRLLVMTGGDYFWLFLFRISRTFLIAARASESRDSRAAALESSCDAEGVILGLSGCEGFCGVSEFMIKSCLIHTPLVKTFLPALWPEGEPVVLSCVIAGGAGEFCVFAEEIASSLCSSQ
>NC_009943.1|WP_012176406.1|3593879_3595043_-|EAL-domain-containing-protein
MKTGANTTEGRGQWYLEAAADANREWMVAIEAVPFVIGREKDCNLTLTDSLVSRHHCEIHISGDHLWIRDLNSKNGTFVNSRQMDQAELLKPGDLVSIGKFQFNIKYFTPDAGLTVDDTLSLGDLSNYDLSLEPRLRAMIAQQSVIIHFQPVFNISSASVLGYEILGRTTDENLPADATTLFDMAEWFGCDAELSSLFREAGVGIGKHLPGSPLLFVNATSSEISRMDRLVESLGRVHDLAPANRVVLELNEKAANDTTEIARLRTALNDLNMGLAFDDFGVGQTRLAELAKAPPDFLKFDISLIRKIHLAPKRLHQMVATFVTAARDLEISSLAEGIECAEEADVCRNLGFQFAQGFFYGRPLPINEIHTTGFPETGATGQAPACP
>NC_009943.1|WP_012176407.1|3595171_3595450_-|putative-addiction-module-antidote-protein
MKVTTKKWDASEYLDSPEMIHEYLQAAFAEGDSELLLAAIGNVAKARGMSEIARKTNLSRQNLYKALGPNGAPKFDTVKKVIEALGCKLAVM
>NC_009943.1|WP_012176408.1|3595759_3596125_-|hypothetical-protein
MTNKQQSTLENDLVLIHFEDVPMVFARVETIVADHKKEWYQVKLLVLAVPLQVVTWILKEEYINGGEFTMEGKRVRMERVVCPEDPLPATAAPTIPSGKSPSKRKSTGSGQVISFPKKAPK
>NC_009943.1|WP_012176409.1|3596114_3597095_-|serine-protease
MAENRKKTVSLVLGSGGARGLAHIGVIHWLEENGYDIRSITGCSMGALVGGIFAAGKLDEYETWVRGVTRRDILTLIDLSWGGGGLVKGDRIIHTMVDLVGEIAIEDLPIAYTAVAVDLKNEKEVWIQSGPLFDAIRASISLPLFFTPFRFKGVPLIDGGVLNPVPIAPTFGDGTDMTIAVNLDGPSKKETTPPEPLPEAEPASPFAETISRLIKKFRKSEEPDEPDDEEEWGMFDVASMAFDAMQGTIARLKLAAYPPTCVVEIPKNACGLLEFDRAAEMIDLGYRSTQDRLSCLFDPDDTEDRQAAGSIEKVQSPADQKENHDE
>NC_009943.1|WP_012176410.1|3597232_3597712_+|Lrp/AsnC-family-transcriptional-regulator
MLSETEKKVIAAIQGDIPITERPYLEIAEKLDISEEALIAVLADLRDRGIIRRFGATLRHQKSGITANAMVAWKVEEDRIEDVGKVFAAFDAVSHCYRRDPVPDWPYNMYTMVHAVSEENCLETTRRMAEAAGVSDYSVLFSRRELKKTSMEYFTDEDD
>NC_009943.1|WP_012176411.1|3597822_3598110_+|GIY-YIG-nuclease-family-protein
MEKLPCVYIMTNNTNSVLYTGVTSHLKKRVYKHKEKITGGFTKKYNAHKLVYYEVFQDMKAAIAREKQIKNGSRQKKVDLIDNMNAEWVDLYELL
>NC_009943.1|WP_012176412.1|3598303_3599791_+|DUF4403-family-protein
MHFIKIVLTTVVLVSMVLAVAVVATRIYLGSRYPAPAAGATAVPAAPVETQAKPGITILNIPLFMSVDDLGRALEQHVPKTYQDVDDDPTDLLIEDQITYDLKRGPIKISIIENGFDFSFSVTGVVRARGKVNLVVTRIPASAHADVAGRISGRIGVNILPDWQVKPTLDFSVQMDEATIPIENFGKISLRTFLEEKLTKKIQKERYKLVEKVLAKDQVRKEVTEAWAQMHRVEQVHDFPPVWIRVAPQKVGLMPPTAKGEEGLALGLQVALRTDMGISSTLPHAPITPLPDASILETISNRFRIRVPFQIHTAAVNSYLAKTVTGTGHDLVKGLRVTVDRAQVLSAEEDRLTAIAFATFTHDRLNIKTQARVYLTGRVVYDAKAGRIELDDVTYDAAFSRWWAGLAHWVAAPYVAHQARTLLVFDLSREIAKADKAIDRLVTRLAVPPGIKADLSVRSPQINHLGINHDGIYGHLELNGTLEAALDFAEPAPVP
>NC_009943.1|WP_012176413.1|3599787_3601143_+|B12-binding-domain-containing-radical-SAM-protein
MTSRFPTILCVNPWIHDFAAYDVWSKPLGLLSLAGVLRALGCRVFYMDCTDRFHPRAQTADPFARCGRGPYLKTPIAKPAGLEDVGRTFCRYGITPEWFVQDLRALPARPDLVLVTSVMTYWYPGVAETIQVIKSVFPKVPVVLGGVYATLYPDHARTNSGADAVMPGAWEKDLPEIVAAHTGMTLDPGFDPAAWQDLPFPAIDLQRVINYAPLLTTRGCPFSCPYCANRFLHPGPMERRAPESVVKEIGFRHTAHGVKDFAFYDDALLIDPERHFVPMAEQVIAKGWKLRFHTPNALHVREITPAVAGLMRQMGFETVRLGLETTSFENRQSFDAKVTAQEFEHAVACLKQAGFDRRHLGAYLLAGLPGQSMENIKDSISVVAQSGITPVPTYYTPLPHTALWPAAVASSRYDLESDPIFTNNAILPCTKEPFSWDTISRIKQWVTKSIR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_009943_7	7.2\|3544087\|33\|NC_009943\|CRISPRCasFinder	3544087-3544119	33	MN830259	Lactobacillus phage JNU_P10, complete genome	34539-34571	6	0.818
NC_009943_8	8.12\|3590808\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590808-3590839	32	MT001829	Salmonella phage SE_PL, complete genome	31385-31416	6	0.812
NC_009943_8	8.12\|3590808\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590808-3590839	32	MK773491	Salmonella phage 7t3, complete genome	317349-317380	6	0.812
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	MH572297	Microviridae sp. isolate SD_SC_7, complete genome	2157-2188	6	0.812
NC_009943_4	4.1\|2230176\|28\|NC_009943\|CRISPRCasFinder	2230176-2230203	28	NZ_CP043960	Streptomyces tendae strain 139 plasmid unnamed1, complete sequence	24738-24765	7	0.75
NC_009943_4	4.1\|2230176\|28\|NC_009943\|CRISPRCasFinder	2230176-2230203	28	MN694577	Marine virus AFVG_250M507, complete genome	6774-6801	7	0.75
NC_009943_8	8.8\|3590564\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590564-3590595	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	25362-25393	7	0.781
NC_009943_8	8.12\|3590808\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590808-3590839	32	MN850573	Escherichia phage muut, complete genome	82206-82237	7	0.781
NC_009943_8	8.12\|3590808\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590808-3590839	32	MN850601	Escherichia phage inny, complete genome	119459-119490	7	0.781
NC_009943_8	8.18\|3591174\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591174-3591205	32	MH992131	UNVERIFIED: Thermus phage TSP4, complete genome	22185-22216	7	0.781
NC_009943_8	8.19\|3591235\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591235-3591266	32	NC_019957	Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence	349414-349445	7	0.781
NC_009943_8	8.21\|3591357\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591357-3591388	32	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	347331-347362	7	0.781
NC_009943_8	8.25\|3591601\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591601-3591632	32	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	122258-122289	7	0.781
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP033075	Buttiauxella sp. 3AFRM03 plasmid pBTX_57, complete sequence	24747-24778	7	0.781
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NC_013505	Lactobacillus johnsonii FI9785 plasmid p9785L, complete sequence	8668-8699	7	0.781
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	MT133560	Pseudomonas phage fnug, complete genome	235708-235739	7	0.781
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	KU521356	Pseudomonas phage KTN4, complete genome	236259-236290	7	0.781
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	KJ081346	Bacillus phage BCP8-2, complete genome	148304-148335	7	0.781
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	270877-270908	7	0.781
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NC_027352	Bacillus phage JBP901, complete genome	111009-111040	7	0.781
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	270877-270908	7	0.781
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	MN364664	Xanthomonas phage Xoo-sp15, complete genome	50915-50946	7	0.781
NC_009943_8	8.32\|3592028\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592028-3592059	32	MN234196	Gordonia phage CloverMinnie, complete genome	670-701	7	0.781
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP024609	Massilia violaceinigra strain B2 plasmid unnamed, complete sequence	26496-26527	7	0.781
NC_009943_1	1.1\|860188\|41\|NC_009943\|CRISPRCasFinder,CRT	860188-860228	41	NZ_CP020371	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence	373514-373554	8	0.805
NC_009943_8	8.12\|3590808\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590808-3590839	32	NZ_CP021746	Agarilytica rhodophyticola strain 017 plasmid pSU2, complete sequence	17609-17640	8	0.75
NC_009943_8	8.12\|3590808\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590808-3590839	32	NZ_MG205643	Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence	57930-57961	8	0.75
NC_009943_8	8.21\|3591357\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591357-3591388	32	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	29662-29693	8	0.75
NC_009943_8	8.24\|3591540\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591540-3591571	32	NZ_CP010624	Phaeobacter inhibens strain P51 plasmid pP51_a, complete sequence	37708-37739	8	0.75
NC_009943_8	8.24\|3591540\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591540-3591571	32	NZ_CP010669	Phaeobacter inhibens strain P57 plasmid pP57_a, complete sequence	37708-37739	8	0.75
NC_009943_8	8.24\|3591540\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591540-3591571	32	NZ_CP010742	Phaeobacter inhibens strain P59 plasmid pP59_a, complete sequence	37695-37726	8	0.75
NC_009943_8	8.24\|3591540\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591540-3591571	32	NZ_CP010618	Phaeobacter inhibens strain P30 isolate M4-3.1A plasmid pP30_a, complete sequence	37694-37725	8	0.75
NC_009943_8	8.24\|3591540\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591540-3591571	32	NZ_CP010697	Phaeobacter inhibens strain P24 plasmid pP24_a, complete sequence	37708-37739	8	0.75
NC_009943_8	8.24\|3591540\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591540-3591571	32	NZ_CP010746	Phaeobacter inhibens strain P48 isolate M21-2.3 plasmid pP48_a, complete sequence	37678-37709	8	0.75
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP012101	Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence	19895-19926	8	0.75
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP039229	Piscirickettsia salmonis strain SR1 plasmid unnamed2, complete sequence	27106-27137	8	0.75
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP039236	Piscirickettsia salmonis strain BI1 plasmid unnamed2, complete sequence	50202-50233	8	0.75
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP039242	Piscirickettsia salmonis strain MR5 plasmid unnamed2, complete sequence	53544-53575	8	0.75
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	319308-319339	8	0.75
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	356601-356632	8	0.75
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP033246	Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence	59780-59811	8	0.75
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP033248	Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence	59821-59852	8	0.75
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	438526-438557	8	0.75
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	389608-389639	8	0.75
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	LR135896	uncultured phage genomic DNA containing rbcL region region	41914-41945	8	0.75
NC_009943_8	8.32\|3592028\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592028-3592059	32	NZ_CP032053	Streptomyces clavuligerus strain F1D-5 plasmid pSCL2, complete sequence	24524-24555	8	0.75
NC_009943_8	8.32\|3592028\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592028-3592059	32	CP003957	Rhodococcus opacus PD630 plasmid 8, complete sequence	58803-58834	8	0.75
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MN709127	Escherichia virus Ec_Makalu_002, complete genome	100914-100945	8	0.75
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MN894885	Escherichia virus Ec_Makalu_001, complete genome	98814-98845	8	0.75
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MN882349	Escherichia virus Ec_Makalu_003, complete genome	99604-99635	8	0.75
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	4911-4942	8	0.75
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	JN638751	Bacillus phage G, complete genome	378231-378262	8	0.75
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MN709127	Escherichia virus Ec_Makalu_002, complete genome	100914-100945	8	0.75
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MN894885	Escherichia virus Ec_Makalu_001, complete genome	98814-98845	8	0.75
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MN882349	Escherichia virus Ec_Makalu_003, complete genome	99604-99635	8	0.75
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	4911-4942	8	0.75
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	JN638751	Bacillus phage G, complete genome	378231-378262	8	0.75
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP024423	Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence	317664-317695	8	0.75
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	104725-104756	8	0.75
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP044080	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed3, complete sequence	256785-256816	8	0.75
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP031082	Paracoccus yeei strain CCUG 32053 plasmid pYEE4, complete sequence	62795-62826	8	0.75
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	615258-615289	8	0.75
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	228770-228801	8	0.75
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	224529-224560	8	0.75
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	194201-194232	8	0.75
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1611340-1611371	8	0.75
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	616448-616479	8	0.75
NC_009943_8	8.39\|3592455\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592455-3592486	32	NZ_CP017078	Novosphingobium resinovorum strain SA1 plasmid pSA3, complete sequence	66812-66843	8	0.75
NC_009943_8	8.39\|3592455\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592455-3592486	32	NZ_CP031753	Rhodobacter sphaeroides strain EBL0706 plasmid p.B, complete sequence	57423-57454	8	0.75
NC_009943_1	1.1\|860188\|41\|NC_009943\|CRISPRCasFinder,CRT	860188-860228	41	NZ_CP020372	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence	393280-393320	9	0.78
NC_009943_8	8.3\|3590259\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590259-3590290	32	NZ_CP009636	Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence	10294-10325	9	0.719
NC_009943_8	8.3\|3590259\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590259-3590290	32	NZ_CP053962	Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence	74670-74701	9	0.719
NC_009943_8	8.5\|3590381\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590381-3590412	32	MN586053	Arthrobacter phage BeatusComedenti, complete genome	8865-8896	9	0.719
NC_009943_8	8.5\|3590381\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590381-3590412	32	NC_031254	Arthrobacter phage Kitkat, complete genome	8991-9022	9	0.719
NC_009943_8	8.6\|3590442\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590442-3590473	32	NZ_CP010024	Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence	70100-70131	9	0.719
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	433031-433062	9	0.719
NC_009943_8	8.12\|3590808\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590808-3590839	32	LK392619	Streptococcus phage Cp-7, complete genome	9672-9703	9	0.719
NC_009943_8	8.12\|3590808\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590808-3590839	32	HQ633071	Synechococcus phage S-SKS1 genomic sequence	185130-185161	9	0.719
NC_009943_8	8.12\|3590808\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590808-3590839	32	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	723838-723869	9	0.719
NC_009943_8	8.20\|3591296\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591296-3591327	32	GQ478088	Enterococcus phage phiFL4A, complete genome	19184-19215	9	0.719
NC_009943_8	8.24\|3591540\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591540-3591571	32	CP052329	Klebsiella pneumoniae strain D17KP0032 plasmid pD17KP0032-1, complete sequence	10206-10237	9	0.719
NC_009943_8	8.28\|3591784\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591784-3591815	32	NZ_KX960110	Escherichia coli strain CREC-TJ2 plasmid pCREC-TJ2-NDM, complete sequence	28004-28035	9	0.719
NC_009943_8	8.28\|3591784\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591784-3591815	32	NZ_CP032988	Escherichia coli strain BE2-5 plasmid p2_BE2-5, complete sequence	65637-65668	9	0.719
NC_009943_8	8.28\|3591784\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591784-3591815	32	NZ_CP046008	Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence	31835-31866	9	0.719
NC_009943_8	8.28\|3591784\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591784-3591815	32	NZ_CP020060	Escherichia coli strain AR_0061 plasmid unitig_2, complete sequence	15632-15663	9	0.719
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NC_018687	Bacillus thuringiensis MC28 plasmid pMC189, complete sequence	86903-86934	9	0.719
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	MN693414	Marine virus AFVG_25M246, complete genome	10246-10277	9	0.719
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	MN693468	Marine virus AFVG_25M247, complete genome	7455-7486	9	0.719
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	MN693065	Marine virus AFVG_25M245, complete genome	12598-12629	9	0.719
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	MN693042	Marine virus AFVG_25M244, complete genome	22662-22693	9	0.719
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_KX528687	Acinetobacter lwoffii strain ED9-5a plasmid pALWED3.1, complete sequence	86054-86085	9	0.719
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	298825-298856	9	0.719
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	MN694042	Marine virus AFVG_250M538, complete genome	51010-51041	9	0.719
NC_009943_8	8.32\|3592028\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592028-3592059	32	NZ_AP015031	Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence	70654-70685	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MN655998	Escherichia phage E26, complete genome	99446-99477	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MH560358	Escherichia virus KFS-EC, complete genome	43740-43771	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MK573636	Escherichia phage vB_EcoM_PHB13, partial genome	135121-135152	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MT764208	Escherichia phage JEP8, complete genome	13909-13940	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MT478991	Escherichia phage vB_EcoM_011D4, complete genome	50470-50501	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MK327941	Escherichia phage vB_EcoM_G37-3, complete genome	101166-101197	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	NC_009821	Enterobacteria phage Phi1, complete genome	99721-99752	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MF327006	Shigella phage Sf20, complete genome	35197-35228	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	NC_025425	Enterobacteria phage GEC-3S complete genome	99591-99622	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MK327947	Escherichia phage vB_EcoM_G5211, complete genome	100757-100788	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	NC_041936	Escherichia phage ECD7, complete genome	102381-102412	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	AY343333	Enterobacteria phage RB49, complete genome	98391-98422	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MK327935	Escherichia phage vB_EcoM_G2494, complete genome	101605-101636	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MK962753	Shigella phage JK32, complete genome	109317-109348	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	NC_012740	Enterobacteria phage JSE, complete genome	102968-102999	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MN850574	Escherichia phage kaaroe, complete genome	7250-7281	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MN850615	Escherichia phage kvi, complete genome	37124-37155	9	0.719
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	NZ_AP019830	Leptotrichia wadei strain JCM16777 plasmid pJCM16777-1, complete sequence	846-877	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MN655998	Escherichia phage E26, complete genome	99446-99477	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MH560358	Escherichia virus KFS-EC, complete genome	43740-43771	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MK573636	Escherichia phage vB_EcoM_PHB13, partial genome	135121-135152	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MT764208	Escherichia phage JEP8, complete genome	13909-13940	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MT478991	Escherichia phage vB_EcoM_011D4, complete genome	50470-50501	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MK327941	Escherichia phage vB_EcoM_G37-3, complete genome	101166-101197	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	NC_009821	Enterobacteria phage Phi1, complete genome	99721-99752	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MF327006	Shigella phage Sf20, complete genome	35197-35228	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	NC_025425	Enterobacteria phage GEC-3S complete genome	99591-99622	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MK327947	Escherichia phage vB_EcoM_G5211, complete genome	100757-100788	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	NC_041936	Escherichia phage ECD7, complete genome	102381-102412	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	AY343333	Enterobacteria phage RB49, complete genome	98391-98422	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MK327935	Escherichia phage vB_EcoM_G2494, complete genome	101605-101636	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MK962753	Shigella phage JK32, complete genome	109317-109348	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	NC_012740	Enterobacteria phage JSE, complete genome	102968-102999	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MN850574	Escherichia phage kaaroe, complete genome	7250-7281	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MN850615	Escherichia phage kvi, complete genome	37124-37155	9	0.719
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	NZ_AP019830	Leptotrichia wadei strain JCM16777 plasmid pJCM16777-1, complete sequence	846-877	9	0.719
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	748799-748830	9	0.719
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	819471-819502	9	0.719
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	1073631-1073662	9	0.719
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	323709-323740	9	0.719
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP020441	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence	4876-4907	9	0.719
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	414347-414378	9	0.719
NC_009943_8	8.39\|3592455\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592455-3592486	32	NZ_CP022416	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence	221203-221234	9	0.719
NC_009943_8	8.39\|3592455\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592455-3592486	32	NZ_CP020444	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed4, complete sequence	182796-182827	9	0.719
NC_009943_8	8.39\|3592455\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592455-3592486	32	NZ_CP018077	Sulfitobacter sp. AM1-D1 plasmid unnamed1, complete sequence	72190-72221	9	0.719
NC_009943_8	8.40\|3592516\|32\|NC_009943\|CRISPRCasFinder,CRT	3592516-3592547	32	NZ_CP016284	Cryobacterium arcticum strain PAMC 27867 plasmid pP27867_2, complete sequence	3089-3120	9	0.719
NC_009943_1	1.1\|860188\|41\|NC_009943\|CRISPRCasFinder,CRT	860188-860228	41	NZ_CP020371	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence	378173-378213	10	0.756
NC_009943_8	8.2\|3590198\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590198-3590229	32	NZ_CP011481	Hoeflea sp. IMCC20628 plasmid, complete sequence	69906-69937	10	0.688
NC_009943_8	8.3\|3590259\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590259-3590290	32	NZ_CP018682	Vibrio harveyi isolate QT520 plasmid p1, complete sequence	38499-38530	10	0.688
NC_009943_8	8.3\|3590259\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590259-3590290	32	NZ_CP018684	Vibrio harveyi isolate QT520 plasmid p3, complete sequence	58841-58872	10	0.688
NC_009943_8	8.7\|3590503\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590503-3590534	32	NZ_CP033045	Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence	366730-366761	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	NZ_CP050068	Klebsiella aerogenes strain 035 plasmid p35, complete sequence	134379-134410	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	CP052310	Klebsiella pneumoniae strain E16KP0102 plasmid pE16KP0102-1, complete sequence	27042-27073	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	CP052558	Klebsiella pneumoniae strain A17KP0008 plasmid pA17KP0008-1, complete sequence	20023-20054	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	CP052269	Klebsiella pneumoniae strain E16KP0268 plasmid pE16K0268-1, complete sequence	28108-28139	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	CP052233	Klebsiella pneumoniae strain E17KP0033 plasmid pE17KP0033-2, complete sequence	24930-24961	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	CP052208	Klebsiella pneumoniae strain E17KP0085 plasmid pE17KP0085-1, complete sequence	27042-27073	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	CP052327	Klebsiella pneumoniae strain E16KP0017 plasmid pE16K0017-1, complete sequence	24680-24711	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	NZ_CP011314	Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence	147975-148006	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	CP052236	Klebsiella pneumoniae strain E17KP0029 plasmid pE17KP0029-1, complete sequence	162767-162798	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	CP052240	Klebsiella pneumoniae strain E17KP0027 plasmid pE17KP0027-1, complete sequence	24680-24711	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	CP052242	Klebsiella pneumoniae strain E17KP0019 plasmid pE17KP0019-1, complete sequence	27042-27073	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	NZ_CP032223	Klebsiella pneumoniae strain AR_0046 plasmid unnamed1, complete sequence	35566-35597	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	CP052488	Klebsiella pneumoniae strain C16KP0024 plasmid pC16KP0024-1, complete sequence	27068-27099	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	NZ_MG845200	Klebsiella oxytoca strain TJ11 plasmid pNDM-TJ11, complete sequence	124912-124943	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	NZ_MG845201	Klebsiella pneumoniae strain TJ03 plasmid pNDM-TJ03, complete sequence	124996-125027	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	AM087121	Acidianus filamentous virus 6, partial viral genome	1982-2013	10	0.688
NC_009943_8	8.10\|3590686\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590686-3590717	32	AM087120	Acidianus filamentous virus 3, partial viral genome	1945-1976	10	0.688
NC_009943_8	8.11\|3590747\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590747-3590778	32	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	41442-41473	10	0.688
NC_009943_8	8.11\|3590747\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590747-3590778	32	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	41442-41473	10	0.688
NC_009943_8	8.12\|3590808\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590808-3590839	32	NZ_CP039286	Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence	73977-74008	10	0.688
NC_009943_8	8.12\|3590808\|32\|NC_009943\|PILER-CR,CRISPRCasFinder,CRT	3590808-3590839	32	MN693352	Marine virus AFVG_25M558, complete genome	31417-31448	10	0.688
NC_009943_8	8.14\|3590930\|32\|NC_009943\|CRISPRCasFinder,CRT	3590930-3590961	32	KT281796	Mycobacterium phage Zakhe101, complete genome	1800-1831	10	0.688
NC_009943_8	8.14\|3590930\|32\|NC_009943\|CRISPRCasFinder,CRT	3590930-3590961	32	AY129335	Mycobacterium virus Corndog, complete genome	1784-1815	10	0.688
NC_009943_8	8.14\|3590930\|32\|NC_009943\|CRISPRCasFinder,CRT	3590930-3590961	32	NC_004685	Mycobacterium phage Corndog, complete genome	1784-1815	10	0.688
NC_009943_8	8.14\|3590930\|32\|NC_009943\|CRISPRCasFinder,CRT	3590930-3590961	32	JN698993	Mycobacterium phage Firecracker, complete genome	1493-1524	10	0.688
NC_009943_8	8.14\|3590930\|32\|NC_009943\|CRISPRCasFinder,CRT	3590930-3590961	32	KJ829260	Mycobacterium phage YungJamal, complete genome	1782-1813	10	0.688
NC_009943_8	8.14\|3590930\|32\|NC_009943\|CRISPRCasFinder,CRT	3590930-3590961	32	NC_022325	Mycobacterium phage Dylan, complete genome	1800-1831	10	0.688
NC_009943_8	8.14\|3590930\|32\|NC_009943\|CRISPRCasFinder,CRT	3590930-3590961	32	MN428052	Mycobacterium phage Smooch, complete genome	1782-1813	10	0.688
NC_009943_8	8.26\|3591662\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591662-3591693	32	MK778457	Escherichia phage vB_EcoS_W011D, complete genome	8577-8608	10	0.688
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	JX094431	Bacillus cereus bacteriophage vB_BceM_Bc431v3, complete genome	110743-110774	10	0.688
NC_009943_8	8.30\|3591906\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591906-3591937	32	NZ_CP016375	Elizabethkingia anophelis strain F3201 plasmid unnamed, complete sequence	2766-2797	10	0.688
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	NZ_LR215002	Mycoplasma conjunctivae strain NCTC10147 plasmid 6	19265-19296	10	0.688
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	MN693694	Marine virus AFVG_250M548, complete genome	23128-23159	10	0.688
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	NZ_LR215002	Mycoplasma conjunctivae strain NCTC10147 plasmid 6	19265-19296	10	0.688
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	MN693694	Marine virus AFVG_250M548, complete genome	23128-23159	10	0.688
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP035502	Sphingosinicella sp. BN140058 plasmid p1, complete sequence	31923-31954	10	0.688
NC_009943_8	8.35\|3592211\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592211-3592242	32	NZ_CP040820	Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence	235261-235292	10	0.688
NC_009943_8	8.37\|3592333\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592333-3592364	32	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	342826-342857	10	0.688
NC_009943_8	8.37\|3592333\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592333-3592364	32	NZ_CP034351	Streptomyces sp. W1SF4 plasmid p1, complete sequence	354574-354605	10	0.688
NC_009943_8	8.40\|3592516\|32\|NC_009943\|CRISPRCasFinder,CRT	3592516-3592547	32	MN693897	Marine virus AFVG_250M931, complete genome	2777-2808	10	0.688
NC_009943_1	1.1\|860188\|41\|NC_009943\|CRISPRCasFinder,CRT	860188-860228	41	NZ_CP020371	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence	361168-361208	11	0.732
NC_009943_1	1.1\|860188\|41\|NC_009943\|CRISPRCasFinder,CRT	860188-860228	41	NZ_CP020372	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence	2652-2692	11	0.732
NC_009943_8	8.28\|3591784\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591784-3591815	32	NZ_CP036405	Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence	109832-109863	11	0.656
NC_009943_8	8.28\|3591784\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3591784-3591815	32	NZ_CP023037	Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence	102555-102586	11	0.656
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	NC_016794	Bacillus cereus F837/76 plasmid pF837_55, complete sequence	54795-54826	11	0.656
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	NC_016772	Bacillus cereus NC7401 plasmid pNC1, complete sequence	27513-27544	11	0.656
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	NZ_CP033790	Bacillus sp. FDAARGOS_527 plasmid unnamed3, complete sequence	26090-26121	11	0.656
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	KX227758	Bacillus phage PfNC7401, complete genome	9107-9138	11	0.656
NC_009943_8	8.33\|3592089\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592089-3592120	32	KX227759	Bacillus phage PfIS075, complete genome	5797-5828	11	0.656
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	NC_016794	Bacillus cereus F837/76 plasmid pF837_55, complete sequence	54795-54826	11	0.656
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	NC_016772	Bacillus cereus NC7401 plasmid pNC1, complete sequence	27513-27544	11	0.656
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	NZ_CP033790	Bacillus sp. FDAARGOS_527 plasmid unnamed3, complete sequence	26090-26121	11	0.656
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	KX227758	Bacillus phage PfNC7401, complete genome	9107-9138	11	0.656
NC_009943_8	8.34\|3592150\|32\|NC_009943\|CRISPRCasFinder,CRT,PILER-CR	3592150-3592181	32	KX227759	Bacillus phage PfIS075, complete genome	5797-5828	11	0.656

1. spacer 7.2|3544087|33|NC_009943|CRISPRCasFinder matches to MN830259 (Lactobacillus phage JNU_P10, complete genome) position: , mismatch: 6, identity: 0.818

aaaacctaaaaaagcctaaaattcaagccgctc	CRISPR spacer
aaaccctaaaaaaccctaaaattcaagcctaca	Protospacer
*** ********* ***************  .

2. spacer 8.12|3590808|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to MT001829 (Salmonella phage SE_PL, complete genome) position: , mismatch: 6, identity: 0.812

ggatatgaaaatattaaaagttttg-tatggga	CRISPR spacer
ggatatgataatattaaacgtttagatgttgg-	Protospacer
******** ********* **** * *.* **

3. spacer 8.12|3590808|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to MK773491 (Salmonella phage 7t3, complete genome) position: , mismatch: 6, identity: 0.812

ggatatgaaaatattaaaagttttg-tatggga	CRISPR spacer
ggatatgataatattaaacgtttagatgttgg-	Protospacer
******** ********* **** * *.* **

4. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MH572297 (Microviridae sp. isolate SD_SC_7, complete genome) position: , mismatch: 6, identity: 0.812

gtgtt-tattttatttaaaatttctgtcatttt	CRISPR spacer
-tgttctattttatttaaaatatctgacagaat	Protospacer
 **** *************** **** **   *

5. spacer 4.1|2230176|28|NC_009943|CRISPRCasFinder matches to NZ_CP043960 (Streptomyces tendae strain 139 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.75

ttcgtcgctcaagactttctccctgttc	CRISPR spacer
gaggtcgctcatgacattctccctgtga	Protospacer
   ******** *** **********

6. spacer 4.1|2230176|28|NC_009943|CRISPRCasFinder matches to MN694577 (Marine virus AFVG_250M507, complete genome) position: , mismatch: 7, identity: 0.75

ttcgtcgctcaagactttctccctgttc	CRISPR spacer
ttcgtcggtcaagactttctcggctggc	Protospacer
******* *************  .   *

7. spacer 8.8|3590564|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 7, identity: 0.781

tattcgtaattccgcgcgatatcggcggaggc	CRISPR spacer
tgttcgtgattgcgcgcgatatcggcgaggcg	Protospacer
*.*****.*** ***************..*

8. spacer 8.12|3590808|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to MN850573 (Escherichia phage muut, complete genome) position: , mismatch: 7, identity: 0.781

ggatatgaaaatattaaaagttttgtatggga	CRISPR spacer
gattatgaaaatataaaaaattttgttagtga	Protospacer
*. *********** ****.******  * **

9. spacer 8.12|3590808|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to MN850601 (Escherichia phage inny, complete genome) position: , mismatch: 7, identity: 0.781

ggatatgaaaatattaaaagttttgtatggga	CRISPR spacer
gattatgaaaatataaaaaattttgttagtga	Protospacer
*. *********** ****.******  * **

10. spacer 8.18|3591174|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MH992131 (UNVERIFIED: Thermus phage TSP4, complete genome) position: , mismatch: 7, identity: 0.781

aatccaccatggcctcgtcttcctcccgcagg	CRISPR spacer
gctccaccagggcctcggcttcctccccgatg	Protospacer
. ******* ******* *********  * *

11. spacer 8.19|3591235|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_019957 (Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence) position: , mismatch: 7, identity: 0.781

ctgtccaggtgtatctcgatgaggtgcgggcg	CRISPR spacer
aattcgtggtgtatctcgatgagctgcgggag	Protospacer
   **  **************** ****** *

12. spacer 8.21|3591357|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 7, identity: 0.781

gtattcggaggcggctttgtcggaaccgaact	CRISPR spacer
gaagacggaggcggcgttggcggaaccggcct	Protospacer
* *  ********** *** ********. **

13. spacer 8.25|3591601|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 7, identity: 0.781

gaataaggaaaaaccggttttggttttcgatc	CRISPR spacer
gcagggcgaaataccggttttggtttacgatc	Protospacer
* * .. **** ************** *****

14. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033075 (Buttiauxella sp. 3AFRM03 plasmid pBTX_57, complete sequence) position: , mismatch: 7, identity: 0.781

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
gtgttttttttatttaaaattcctaaaagttg	Protospacer
****** **************.**.  * **

15. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_013505 (Lactobacillus johnsonii FI9785 plasmid p9785L, complete sequence) position: , mismatch: 7, identity: 0.781

-gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
aataatt-ttatatttaaaatttatgtcattta	Protospacer
 .*. ** ** ************ ********

16. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MT133560 (Pseudomonas phage fnug, complete genome) position: , mismatch: 7, identity: 0.781

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
aagttatctttatttaaaatatcagtcatttt	Protospacer
. ***  .************ ** ********

17. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to KU521356 (Pseudomonas phage KTN4, complete genome) position: , mismatch: 7, identity: 0.781

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
aagttatctttatttaaaatatcagtcatttt	Protospacer
. ***  .************ ** ********

18. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to KJ081346 (Bacillus phage BCP8-2, complete genome) position: , mismatch: 7, identity: 0.781

gtgt-ttattttatttaaaatttctgtcatttt	CRISPR spacer
-tgtaccaccttattttaaatttctgtcatatt	Protospacer
 *** ..*..****** ************* **

19. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 7, identity: 0.781

gtgtttattttatttaaaatttctgtcatttt-	CRISPR spacer
ttgtttcttttatttaaaatatct-ttattaca	Protospacer
 ***** ************* *** *.*** .

20. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_027352 (Bacillus phage JBP901, complete genome) position: , mismatch: 7, identity: 0.781

gtgt-ttattttatttaaaatttctgtcatttt	CRISPR spacer
-tgtaccaccttattttaaatttctgtcatatt	Protospacer
 *** ..*..****** ************* **

21. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 7, identity: 0.781

gtgtttattttatttaaaatttctgtcatttt-	CRISPR spacer
ttgtttcttttatttaaaatatct-ttattaca	Protospacer
 ***** ************* *** *.*** .

22. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN364664 (Xanthomonas phage Xoo-sp15, complete genome) position: , mismatch: 7, identity: 0.781

gtgt-ttattttatttaaaatttctgtcatttt	CRISPR spacer
-tgtaccaccttattttaaatttctgtcatatt	Protospacer
 *** ..*..****** ************* **

23. spacer 8.32|3592028|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN234196 (Gordonia phage CloverMinnie, complete genome) position: , mismatch: 7, identity: 0.781

catatcag-gttgctgtcgaggtcgttgatggt	CRISPR spacer
-gcctcagtgttgctgtcgaggtcgtgggtggc	Protospacer
 .. **** ***************** *.***.

24. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024609 (Massilia violaceinigra strain B2 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ctcatgatcgccgtgcgggccgcgccg-tagct	CRISPR spacer
tccttgatcgccgcgccggccgcgccgataga-	Protospacer
..* *********.** ********** ***

25. spacer 1.1|860188|41|NC_009943|CRISPRCasFinder,CRT matches to NZ_CP020371 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence) position: , mismatch: 8, identity: 0.805

cgccacgccgggagcgccgcaccccagtgcggcacccccgg	CRISPR spacer
cgaccgactgggagcgccgcaccccagtgcggcccgccctg	Protospacer
** *  .*.************************ * *** *

26. spacer 8.12|3590808|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021746 (Agarilytica rhodophyticola strain 017 plasmid pSU2, complete sequence) position: , mismatch: 8, identity: 0.75

ggatatgaaaatattaaaagttttgtatggga	CRISPR spacer
ttattgttaaatattagtagttttgtatggga	Protospacer
  **    ********. **************

27. spacer 8.12|3590808|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 8, identity: 0.75

ggatatgaaaatattaaaagttttgtatggga	CRISPR spacer
gcatatgaaaatattaagagttatgaagatta	Protospacer
* ***************.**** ** * .  *

28. spacer 8.21|3591357|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gtattcggaggcggctttgtcggaaccgaact	CRISPR spacer
acattcggaggcggctttgtctgatccagaaa	Protospacer
..******************* ** **..*

29. spacer 8.24|3591540|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010624 (Phaeobacter inhibens strain P51 plasmid pP51_a, complete sequence) position: , mismatch: 8, identity: 0.75

ccctgggaaaagattatgcgtcggcggccgag	CRISPR spacer
agatgggaaatgattatgcttcggcgggggtg	Protospacer
   ******* ******** *******  * *

30. spacer 8.24|3591540|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010669 (Phaeobacter inhibens strain P57 plasmid pP57_a, complete sequence) position: , mismatch: 8, identity: 0.75

ccctgggaaaagattatgcgtcggcggccgag	CRISPR spacer
agatgggaaatgattatgcttcggcgggggtg	Protospacer
   ******* ******** *******  * *

31. spacer 8.24|3591540|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010742 (Phaeobacter inhibens strain P59 plasmid pP59_a, complete sequence) position: , mismatch: 8, identity: 0.75

ccctgggaaaagattatgcgtcggcggccgag	CRISPR spacer
agatgggaaatgattatgcttcggcgggggtg	Protospacer
   ******* ******** *******  * *

32. spacer 8.24|3591540|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010618 (Phaeobacter inhibens strain P30 isolate M4-3.1A plasmid pP30_a, complete sequence) position: , mismatch: 8, identity: 0.75

ccctgggaaaagattatgcgtcggcggccgag	CRISPR spacer
agatgggaaatgattatgcttcggcgggggtg	Protospacer
   ******* ******** *******  * *

33. spacer 8.24|3591540|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010697 (Phaeobacter inhibens strain P24 plasmid pP24_a, complete sequence) position: , mismatch: 8, identity: 0.75

ccctgggaaaagattatgcgtcggcggccgag	CRISPR spacer
agatgggaaatgattatgcttcggcgggggtg	Protospacer
   ******* ******** *******  * *

34. spacer 8.24|3591540|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010746 (Phaeobacter inhibens strain P48 isolate M21-2.3 plasmid pP48_a, complete sequence) position: , mismatch: 8, identity: 0.75

ccctgggaaaagattatgcgtcggcggccgag	CRISPR spacer
agatgggaaatgattatgcttcggcgggggtg	Protospacer
   ******* ******** *******  * *

35. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012101 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence) position: , mismatch: 8, identity: 0.75

gtgtttattttatttaaaatttctgtcatttt----	CRISPR spacer
atgttgattttatttaaaatttct----tctccaga	Protospacer
.**** ******************    *.*.

36. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039229 (Piscirickettsia salmonis strain SR1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
ttgtttattttttttaaaatatctggtaatag	Protospacer
 ********** ******** **** .* *

37. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039236 (Piscirickettsia salmonis strain BI1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
ttgtttattttttttaaaatatctggtaatag	Protospacer
 ********** ******** **** .* *

38. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039242 (Piscirickettsia salmonis strain MR5 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
ttgtttattttttttaaaatatctggtaatag	Protospacer
 ********** ******** **** .* *

39. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 8, identity: 0.75

gtgtttattttatttaaaatttctgtcatttt----	CRISPR spacer
ctttttattttatttaaatattctg----tttggaa	Protospacer
 * ***************  *****    ***

40. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 8, identity: 0.75

gtgtttattttatttaaaatttctgtcatttt----	CRISPR spacer
ctttttattttatttaaatattctg----tttggaa	Protospacer
 * ***************  *****    ***

41. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033246 (Clostridium butyricum strain CFSA3987 plasmid pCFSA3987, complete sequence) position: , mismatch: 8, identity: 0.75

gtgtttattttatttaaaatttctgtcatttt----	CRISPR spacer
ctttttattttatttaaatattctg----tttggaa	Protospacer
 * ***************  *****    ***

42. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033248 (Clostridium butyricum strain CFSA3989 plasmid pCFSA3989, complete sequence) position: , mismatch: 8, identity: 0.75

gtgtttattttatttaaaatttctgtcatttt----	CRISPR spacer
ctttttattttatttaaatattctg----tttggaa	Protospacer
 * ***************  *****    ***

43. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 8, identity: 0.75

gtgtttattttatttaaaatttctgtcatttt----	CRISPR spacer
ctttttattttatttaaatattctg----tttggaa	Protospacer
 * ***************  *****    ***

44. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 8, identity: 0.75

gtgtttattttatttaaaatttctgtcatttt----	CRISPR spacer
ctttttattttatttaaatattctg----tttggaa	Protospacer
 * ***************  *****    ***

45. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to LR135896 (uncultured phage genomic DNA containing rbcL region region) position: , mismatch: 8, identity: 0.75

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
ttgtttattttaattaaaattgctttgtcctt	Protospacer
 *********** ******** ** *  ..**

46. spacer 8.32|3592028|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032053 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL2, complete sequence) position: , mismatch: 8, identity: 0.75

catatcaggttgctgtcgaggtcgttgatggt	CRISPR spacer
gacgacaggttgctgtcgaggtcgtagacgac	Protospacer
 *.. ******************** **.*..

47. spacer 8.32|3592028|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to CP003957 (Rhodococcus opacus PD630 plasmid 8, complete sequence) position: , mismatch: 8, identity: 0.75

catatcag-----gttgctgtcgaggtcgttgatggt	CRISPR spacer
-----cggtgatcgttgctgtcgagggcggtgatggt	Protospacer
     *.*     ************* ** *******

48. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN709127 (Escherichia virus Ec_Makalu_002, complete genome) position: , mismatch: 8, identity: 0.75

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttt	Protospacer
.     ****.************ ********

49. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN894885 (Escherichia virus Ec_Makalu_001, complete genome) position: , mismatch: 8, identity: 0.75

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttt	Protospacer
.     ****.************ ********

50. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN882349 (Escherichia virus Ec_Makalu_003, complete genome) position: , mismatch: 8, identity: 0.75

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttt	Protospacer
.     ****.************ ********

51. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 8, identity: 0.75

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
atcaggaaaacttttttttaaatattttgtta	Protospacer
*  *...** *** *****************

52. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 8, identity: 0.75

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
acaatgagtccttcttttttaatattttgttt	Protospacer
* ** ... **** ***** ************

53. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN709127 (Escherichia virus Ec_Makalu_002, complete genome) position: , mismatch: 8, identity: 0.75

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttt	Protospacer
.     ****.************ ********

54. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN894885 (Escherichia virus Ec_Makalu_001, complete genome) position: , mismatch: 8, identity: 0.75

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttt	Protospacer
.     ****.************ ********

55. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN882349 (Escherichia virus Ec_Makalu_003, complete genome) position: , mismatch: 8, identity: 0.75

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttt	Protospacer
.     ****.************ ********

56. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 8, identity: 0.75

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
atcaggaaaacttttttttaaatattttgtta	Protospacer
*  *...** *** *****************

57. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 8, identity: 0.75

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
acaatgagtccttcttttttaatattttgttt	Protospacer
* ** ... **** ***** ************

58. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024423 (Paracoccus yeei strain TT13 plasmid pTT13-1, complete sequence) position: , mismatch: 8, identity: 0.75

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
ccggtgatcgccgtgcaggccgcgccgagcgt	Protospacer
*. .************.********** .  *

59. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
tcgaggatcgccgtgcgcgcagcgccgtaggc	Protospacer
.. * ************ ** ********* .

60. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044080 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
ccggtgatcgccgtgcaggccgcgccgagcgt	Protospacer
*. .************.********** .  *

61. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031082 (Paracoccus yeei strain CCUG 32053 plasmid pYEE4, complete sequence) position: , mismatch: 8, identity: 0.75

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
ccggtgatcgccgtgcaggccgcgccgagcgt	Protospacer
*. .************.********** .  *

62. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 8, identity: 0.75

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
gtcatgatcgccgagccggccgcggtcgagcc	Protospacer
 ************ ** ******* .  ***.

63. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 8, identity: 0.75

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
cgcggcagcgccgtgcggaccgcgccgtcgcg	Protospacer
* *.  * **********.********* **

64. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
ggcatgatcgccgtgggggccgggctggacca	Protospacer
  ************* ****** **.* * *

65. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 8, identity: 0.75

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
cgcggcagcgccgtgcggaccgcgccgtcgcg	Protospacer
* *.  * **********.********* **

66. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.75

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
atcatgatcggcgagcgggccgcggagttcat	Protospacer
 ********* ** **********  **   *

67. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 8, identity: 0.75

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
gtcatgatcgccgagccggccgcggtcgagcc	Protospacer
 ************ ** ******* .  ***.

68. spacer 8.39|3592455|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017078 (Novosphingobium resinovorum strain SA1 plasmid pSA3, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgacggcccgaaaaccgccgccctgcagtg	CRISPR spacer
acagtcggccagataaccgccgccctgcaccg	Protospacer
.  * ***** ** *************** .*

69. spacer 8.39|3592455|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031753 (Rhodobacter sphaeroides strain EBL0706 plasmid p.B, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgacggcccgaaaaccgccgc-cctgcagtg	CRISPR spacer
ggcaacgccccgaaaaccgccgcggccgtcat-	Protospacer
***.*** ***************  *.*. .*

70. spacer 1.1|860188|41|NC_009943|CRISPRCasFinder,CRT matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 9, identity: 0.78

cgccacgccgggagcgccgcaccccagtgcggcacccccgg----	CRISPR spacer
gccgacactgggagcgccgcaccccagtgcgg----cccgggcta	Protospacer
  * **.*.***********************    *****

71. spacer 8.3|3590259|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 9, identity: 0.719

cggtaacgctataagtgattaaatcgttagta	CRISPR spacer
atttgttcctataagtgattaaaacgttaata	Protospacer
   *. . *************** *****.**

72. spacer 8.3|3590259|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

cggtaacgctataagtgattaaatcgttagta	CRISPR spacer
atttgttcctataagtgattaaaacgttaata	Protospacer
   *. . *************** *****.**

73. spacer 8.5|3590381|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to MN586053 (Arthrobacter phage BeatusComedenti, complete genome) position: , mismatch: 9, identity: 0.719

ctgaccggagaactggaactgggcgaagcaac	CRISPR spacer
atcggggaggaactggaactgtgcgaagccac	Protospacer
 * .  *..************ ******* **

74. spacer 8.5|3590381|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NC_031254 (Arthrobacter phage Kitkat, complete genome) position: , mismatch: 9, identity: 0.719

ctgaccggagaactggaactgggcgaagcaac	CRISPR spacer
atcggggaggaactggaactgtgcgaagccac	Protospacer
 * .  *..************ ******* **

75. spacer 8.6|3590442|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010024 (Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence) position: , mismatch: 9, identity: 0.719

gaagatgctgaccgcggcgttcttttctgcca	CRISPR spacer
cctgatgctgaccgcaacgttctttttacccg	Protospacer
   ************..*********.  **.

76. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 9, identity: 0.719

ggttccagagggattatttttttcaccagata	CRISPR spacer
atttcctgagggagtatttttttcattaattg	Protospacer
. **** ****** ***********..*. *.

77. spacer 8.12|3590808|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to LK392619 (Streptococcus phage Cp-7, complete genome) position: , mismatch: 9, identity: 0.719

ggatatgaaaatattaaaagttttgtatggga	CRISPR spacer
caagatgaaaatattaaaacttttgtaaatac	Protospacer
 .* *************** ******* . .

78. spacer 8.12|3590808|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to HQ633071 (Synechococcus phage S-SKS1 genomic sequence) position: , mismatch: 9, identity: 0.719

ggatatgaaaatattaaaagttttgtatggga	CRISPR spacer
cgatttgaaaatataaaaagttttgattttac	Protospacer
 *** ********* **********  *  .

79. spacer 8.12|3590808|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.719

ggatatgaaaatattaaaagttttgtatggga	CRISPR spacer
gactatgaaaatattaaaactgttgtcgatgc	Protospacer
*. **************** * ****  . *

80. spacer 8.20|3591296|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to GQ478088 (Enterococcus phage phiFL4A, complete genome) position: , mismatch: 9, identity: 0.719

ccctccgtccagagcatgacggcggaccagat	CRISPR spacer
cggagaatgcagagcatgacgacgcaccagat	Protospacer
*     .* ************.** *******

81. spacer 8.24|3591540|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to CP052329 (Klebsiella pneumoniae strain D17KP0032 plasmid pD17KP0032-1, complete sequence) position: , mismatch: 9, identity: 0.719

ccctgggaaaagattatgcgtcggcggccgag--	CRISPR spacer
accagggaaaatattatgcgtcggta--tgaatt	Protospacer
 ** ******* ************..  .**.

82. spacer 8.28|3591784|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX960110 (Escherichia coli strain CREC-TJ2 plasmid pCREC-TJ2-NDM, complete sequence) position: , mismatch: 9, identity: 0.719

gtggcctctggcgtgtcaccaagggtgcacgc	CRISPR spacer
atttgccctggcgtgtcacccagcgtgcacag	Protospacer
.*   *.************* ** ******.

83. spacer 8.28|3591784|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032988 (Escherichia coli strain BE2-5 plasmid p2_BE2-5, complete sequence) position: , mismatch: 9, identity: 0.719

gtggcctctggcgtgtcaccaagggtgcacgc	CRISPR spacer
atttgccctggcgtgtcacccagcgtgcacag	Protospacer
.*   *.************* ** ******.

84. spacer 8.28|3591784|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046008 (Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence) position: , mismatch: 9, identity: 0.719

gtggcctctggcgtgtcaccaagggtgcacgc	CRISPR spacer
atttgccctggcgtgtcacccagcgtgcacag	Protospacer
.*   *.************* ** ******.

85. spacer 8.28|3591784|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020060 (Escherichia coli strain AR_0061 plasmid unitig_2, complete sequence) position: , mismatch: 9, identity: 0.719

gtggcctctggcgtgtcaccaagggtgcacgc	CRISPR spacer
atttgccctggcgtgtcacccagcgtgcacag	Protospacer
.*   *.************* ** ******.

86. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_018687 (Bacillus thuringiensis MC28 plasmid pMC189, complete sequence) position: , mismatch: 9, identity: 0.719

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
atgttgattttatttaaaatttcttccccaga	Protospacer
.**** ****************** .* .

87. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN693414 (Marine virus AFVG_25M246, complete genome) position: , mismatch: 9, identity: 0.719

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
tctctaattttatttaaaatatttgtcattgc	Protospacer
 . .* ************** *.******* .

88. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN693468 (Marine virus AFVG_25M247, complete genome) position: , mismatch: 9, identity: 0.719

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
tctctaattttatttaaaatatttgtcattgc	Protospacer
 . .* ************** *.******* .

89. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN693065 (Marine virus AFVG_25M245, complete genome) position: , mismatch: 9, identity: 0.719

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
tctctaattttatttaaaatatttgtcattgc	Protospacer
 . .* ************** *.******* .

90. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN693042 (Marine virus AFVG_25M244, complete genome) position: , mismatch: 9, identity: 0.719

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
tctctaattttatttaaaatatttgtcattgc	Protospacer
 . .* ************** *.******* .

91. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX528687 (Acinetobacter lwoffii strain ED9-5a plasmid pALWED3.1, complete sequence) position: , mismatch: 9, identity: 0.719

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
ttctctattttatttaaaatttttatcaacga	Protospacer
 * *.*****************.*.*** .

92. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 9, identity: 0.719

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
ttgtgtattttatttaaaacttcttgtactaa	Protospacer
 *** **************.****  .*.*

93. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN694042 (Marine virus AFVG_250M538, complete genome) position: , mismatch: 9, identity: 0.719

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
ttgtttatgatatttaaaatttcttattgatt	Protospacer
 *******  **************  .   **

94. spacer 8.32|3592028|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP015031 (Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence) position: , mismatch: 9, identity: 0.719

catatcaggttgctgtcgaggtcgttgatggt	CRISPR spacer
aggctcagcttgctgtcgaggtcggtgaagcc	Protospacer
 .  **** *************** *** * .

95. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN655998 (Escherichia phage E26, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

96. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MH560358 (Escherichia virus KFS-EC, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

97. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

98. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MT764208 (Escherichia phage JEP8, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

99. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MT478991 (Escherichia phage vB_EcoM_011D4, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

100. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MK327941 (Escherichia phage vB_EcoM_G37-3, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

101. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_009821 (Enterobacteria phage Phi1, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

102. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MF327006 (Shigella phage Sf20, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

103. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_025425 (Enterobacteria phage GEC-3S complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

104. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MK327947 (Escherichia phage vB_EcoM_G5211, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

105. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_041936 (Escherichia phage ECD7, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

106. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to AY343333 (Enterobacteria phage RB49, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

107. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MK327935 (Escherichia phage vB_EcoM_G2494, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

108. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

109. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_012740 (Enterobacteria phage JSE, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

110. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN850574 (Escherichia phage kaaroe, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

111. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN850615 (Escherichia phage kvi, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

112. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019830 (Leptotrichia wadei strain JCM16777 plasmid pJCM16777-1, complete sequence) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
ctaaaagaacgatatttttaaatatggttgat	Protospacer
  ********  *************  *   *

113. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN655998 (Escherichia phage E26, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

114. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MH560358 (Escherichia virus KFS-EC, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

115. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

116. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MT764208 (Escherichia phage JEP8, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

117. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MT478991 (Escherichia phage vB_EcoM_011D4, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

118. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MK327941 (Escherichia phage vB_EcoM_G37-3, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

119. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_009821 (Enterobacteria phage Phi1, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

120. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MF327006 (Shigella phage Sf20, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

121. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_025425 (Enterobacteria phage GEC-3S complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

122. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MK327947 (Escherichia phage vB_EcoM_G5211, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

123. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_041936 (Escherichia phage ECD7, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

124. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to AY343333 (Enterobacteria phage RB49, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

125. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MK327935 (Escherichia phage vB_EcoM_G2494, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

126. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

127. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_012740 (Enterobacteria phage JSE, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

128. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN850574 (Escherichia phage kaaroe, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

129. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN850615 (Escherichia phage kvi, complete genome) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtttttgaactttatttttaaattttttgttg	Protospacer
.     ****.************ *******

130. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019830 (Leptotrichia wadei strain JCM16777 plasmid pJCM16777-1, complete sequence) position: , mismatch: 9, identity: 0.719

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
ctaaaagaacgatatttttaaatatggttgat	Protospacer
  ********  *************  *   *

131. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 9, identity: 0.719

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
gtcatgatcgccgagccggccgcggtcgaacc	Protospacer
 ************ ** ******* .  *.*.

132. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 9, identity: 0.719

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
gtcatgatcgccgagccggccgcggtcgaacc	Protospacer
 ************ ** ******* .  *.*.

133. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
gtcatgatcgccgcgccggccgcggtcgaacc	Protospacer
 ************.** ******* .  *.*.

134. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 9, identity: 0.719

ctcatgatcgccgtgcgggccgcgccgtagct--	CRISPR spacer
tgcctgaccgccgtgcgggccgcg--gcggccga	Protospacer
. * ***.****************  *..**.

135. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020441 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
ccggtgatcgccgtccaggccgcgccgagcgt	Protospacer
*. .********** *.********** .  *

136. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 9, identity: 0.719

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
gtcatgatcgccgagccggccgcggtcgaacc	Protospacer
 ************ ** ******* .  *.*.

137. spacer 8.39|3592455|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022416 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgacggcccgaaaaccgccgccctgcagtg----	CRISPR spacer
agcgaggggccgaaaaccgccgc----cagcatgat	Protospacer
.**** ** **************    ***..

138. spacer 8.39|3592455|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020444 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgacggcccgaaaaccgccgccctgcagtg	CRISPR spacer
cgcgaccgcccgaaaaccgctgccgaccgggc	Protospacer
 ***** *************.***   *.*

139. spacer 8.39|3592455|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018077 (Sulfitobacter sp. AM1-D1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgacggcccgaaaaccgccgccctgcagtg----	CRISPR spacer
agcgaggggccgaaaaccgccgc----cagcatgat	Protospacer
.**** ** **************    ***..

140. spacer 8.40|3592516|32|NC_009943|CRISPRCasFinder,CRT matches to NZ_CP016284 (Cryobacterium arcticum strain PAMC 27867 plasmid pP27867_2, complete sequence) position: , mismatch: 9, identity: 0.719

gccccgggttggccgccgctgaggatctggcg	CRISPR spacer
acggcgggtttgccgacgctgaggatctttgc	Protospacer
.*  ****** **** ************

141. spacer 1.1|860188|41|NC_009943|CRISPRCasFinder,CRT matches to NZ_CP020371 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence) position: , mismatch: 10, identity: 0.756

cgccacgccgggagcgccgcaccccagtgcggcacccccgg	CRISPR spacer
ccgaacgctgggagcgccgcatcccagtgcggcgcggcctc	Protospacer
*   ****.************.***********.*  **

142. spacer 8.2|3590198|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011481 (Hoeflea sp. IMCC20628 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

cccttccttcatcagctccacttctgttttta	CRISPR spacer
atagggcgtcatcagccgcacttctgtttttg	Protospacer
 .    * ********. *************.

143. spacer 8.3|3590259|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018682 (Vibrio harveyi isolate QT520 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

cggtaacgctataagtgattaaatcgttagta	CRISPR spacer
tattcctaatataagtgattaatacgttagta	Protospacer
.. *  .. *************  ********

144. spacer 8.3|3590259|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018684 (Vibrio harveyi isolate QT520 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

cggtaacgctataagtgattaaatcgttagta	CRISPR spacer
tattcctaatataagtgattaatacgttagta	Protospacer
.. *  .. *************  ********

145. spacer 8.7|3590503|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gacacggcttctgattggctgacttggctgcc	CRISPR spacer
actccaatttccgaatggctgacttggctgca	Protospacer
. . *...***.** ****************

146. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050068 (Klebsiella aerogenes strain 035 plasmid p35, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

147. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to CP052310 (Klebsiella pneumoniae strain E16KP0102 plasmid pE16KP0102-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

148. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to CP052558 (Klebsiella pneumoniae strain A17KP0008 plasmid pA17KP0008-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

149. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to CP052269 (Klebsiella pneumoniae strain E16KP0268 plasmid pE16K0268-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

150. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to CP052233 (Klebsiella pneumoniae strain E17KP0033 plasmid pE17KP0033-2, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

151. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to CP052208 (Klebsiella pneumoniae strain E17KP0085 plasmid pE17KP0085-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

152. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to CP052327 (Klebsiella pneumoniae strain E16KP0017 plasmid pE16K0017-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

153. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011314 (Klebsiella pneumoniae subsp. pneumoniae strain 234-12 plasmid pKpn23412-362, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

154. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to CP052236 (Klebsiella pneumoniae strain E17KP0029 plasmid pE17KP0029-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

155. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to CP052240 (Klebsiella pneumoniae strain E17KP0027 plasmid pE17KP0027-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

156. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to CP052242 (Klebsiella pneumoniae strain E17KP0019 plasmid pE17KP0019-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

157. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032223 (Klebsiella pneumoniae strain AR_0046 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

158. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to CP052488 (Klebsiella pneumoniae strain C16KP0024 plasmid pC16KP0024-1, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

159. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG845200 (Klebsiella oxytoca strain TJ11 plasmid pNDM-TJ11, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

160. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG845201 (Klebsiella pneumoniae strain TJ03 plasmid pNDM-TJ03, complete sequence) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
attaattgagggtttatttatttcaccagaag	Protospacer
. *  . ***** ****** ********** .

161. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to AM087121 (Acidianus filamentous virus 6, partial viral genome) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
acaagcagagggataatttttttaaccaccaa	Protospacer
.    ********* ******** ****   *

162. spacer 8.10|3590686|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to AM087120 (Acidianus filamentous virus 3, partial viral genome) position: , mismatch: 10, identity: 0.688

ggttccagagggattatttttttcaccagata	CRISPR spacer
acaagcagagggataatttttttaaccaccaa	Protospacer
.    ********* ******** ****   *

163. spacer 8.11|3590747|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 10, identity: 0.688

cgggtaaacgaaaaaacagttaaaacagaaat	CRISPR spacer
ttggtagatgaaaaaacagttaaaaatattac	Protospacer
. ****.*.****************  .  *.

164. spacer 8.11|3590747|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 10, identity: 0.688

cgggtaaacgaaaaaacagttaaaacagaaat	CRISPR spacer
ttggtagatgaaaaaacagttaaaaatattac	Protospacer
. ****.*.****************  .  *.

165. spacer 8.12|3590808|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039286 (Leptospira interrogans strain FMAS_AW1 plasmid pLiSL3, complete sequence) position: , mismatch: 10, identity: 0.688

ggatatgaaaatattaaaagttttgtatggga	CRISPR spacer
gcataagaaaaaattaaaagttttgagctttt	Protospacer
* *** ***** ************* ..

166. spacer 8.12|3590808|32|NC_009943|PILER-CR,CRISPRCasFinder,CRT matches to MN693352 (Marine virus AFVG_25M558, complete genome) position: , mismatch: 10, identity: 0.688

ggatatgaaaatattaaaagttttgtatggga	CRISPR spacer
gaatatgaaaatattaaaattattgacccttg	Protospacer
*.***************** * ***  .   .

167. spacer 8.14|3590930|32|NC_009943|CRISPRCasFinder,CRT matches to KT281796 (Mycobacterium phage Zakhe101, complete genome) position: , mismatch: 10, identity: 0.688

cggcggatgaccagtgttccacggccagatac	CRISPR spacer
tgagtgatgcccagtgttcgacggccagcgcg	Protospacer
.*.  **** ********* ********

168. spacer 8.14|3590930|32|NC_009943|CRISPRCasFinder,CRT matches to AY129335 (Mycobacterium virus Corndog, complete genome) position: , mismatch: 10, identity: 0.688

cggcggatgaccagtgttccacggccagatac	CRISPR spacer
tgagtgatgcccagtgttcgacggccagcgcg	Protospacer
.*.  **** ********* ********

169. spacer 8.14|3590930|32|NC_009943|CRISPRCasFinder,CRT matches to NC_004685 (Mycobacterium phage Corndog, complete genome) position: , mismatch: 10, identity: 0.688

cggcggatgaccagtgttccacggccagatac	CRISPR spacer
tgagtgatgcccagtgttcgacggccagcgcg	Protospacer
.*.  **** ********* ********

170. spacer 8.14|3590930|32|NC_009943|CRISPRCasFinder,CRT matches to JN698993 (Mycobacterium phage Firecracker, complete genome) position: , mismatch: 10, identity: 0.688

cggcggatgaccagtgttccacggccagatac	CRISPR spacer
tgagtgatgcccagtgttcgacggccagcgcg	Protospacer
.*.  **** ********* ********

171. spacer 8.14|3590930|32|NC_009943|CRISPRCasFinder,CRT matches to KJ829260 (Mycobacterium phage YungJamal, complete genome) position: , mismatch: 10, identity: 0.688

cggcggatgaccagtgttccacggccagatac	CRISPR spacer
tgagtgatgcccagtgttcgacggccagcgcg	Protospacer
.*.  **** ********* ********

172. spacer 8.14|3590930|32|NC_009943|CRISPRCasFinder,CRT matches to NC_022325 (Mycobacterium phage Dylan, complete genome) position: , mismatch: 10, identity: 0.688

cggcggatgaccagtgttccacggccagatac	CRISPR spacer
tgagtgatgcccagtgttcgacggccagcgcg	Protospacer
.*.  **** ********* ********

173. spacer 8.14|3590930|32|NC_009943|CRISPRCasFinder,CRT matches to MN428052 (Mycobacterium phage Smooch, complete genome) position: , mismatch: 10, identity: 0.688

cggcggatgaccagtgttccacggccagatac	CRISPR spacer
tgagtgatgcccagtgttcgacggccagcgcg	Protospacer
.*.  **** ********* ********

174. spacer 8.26|3591662|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MK778457 (Escherichia phage vB_EcoS_W011D, complete genome) position: , mismatch: 10, identity: 0.688

ccggggccagtaatccagcaaacatcatttat	CRISPR spacer
ttgtagccagtgagccagcaaacatcatcagg	Protospacer
..* .******.* **************. .

175. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to JX094431 (Bacillus cereus bacteriophage vB_BceM_Bc431v3, complete genome) position: , mismatch: 10, identity: 0.688

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
tacaccaccttattttaaatttctgtcatatt	Protospacer
    ..*..****** ************* **

176. spacer 8.30|3591906|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016375 (Elizabethkingia anophelis strain F3201 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gtgtttattttatttaaaatttctgtcatttt	CRISPR spacer
atatttatttcttttaaaatttctgttgcaag	Protospacer
.*.*******. **************...

177. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR215002 (Mycoplasma conjunctivae strain NCTC10147 plasmid 6) position: , mismatch: 10, identity: 0.688

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtggaaaaaccttatttttaaaaatttagaaa	Protospacer
. ..**.*************** **** *

178. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN693694 (Marine virus AFVG_250M548, complete genome) position: , mismatch: 10, identity: 0.688

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
aaaaaagaattttatttttaaatataagacag	Protospacer
*.*******..**************   ..

179. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR215002 (Mycoplasma conjunctivae strain NCTC10147 plasmid 6) position: , mismatch: 10, identity: 0.688

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
gtggaaaaaccttatttttaaaaatttagaaa	Protospacer
. ..**.*************** **** *

180. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to MN693694 (Marine virus AFVG_250M548, complete genome) position: , mismatch: 10, identity: 0.688

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
aaaaaagaattttatttttaaatataagacag	Protospacer
*.*******..**************   ..

181. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035502 (Sphingosinicella sp. BN140058 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
tccatgatcgccgagcgggcagcgccaacctc	Protospacer
..*********** ****** *****.   ..

182. spacer 8.35|3592211|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040820 (Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence) position: , mismatch: 10, identity: 0.688

ctcatgatcgccgtgcgggccgcgccgtagct	CRISPR spacer
ttcatgaaccccgtgcgggccgcgttcaacgg	Protospacer
.****** * **************..  *

183. spacer 8.37|3592333|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 10, identity: 0.688

cgaccgacgacgtggatccactggccacggat	CRISPR spacer
gctccgacggcgtggagccactggccgcctcc	Protospacer
   ******.****** *********.*   .

184. spacer 8.37|3592333|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

cgaccgacgacgtggatccactggccacggat	CRISPR spacer
ccgccgacgacgcggatccactgccccttcgg	Protospacer
* .*********.********** ** .  .

185. spacer 8.40|3592516|32|NC_009943|CRISPRCasFinder,CRT matches to MN693897 (Marine virus AFVG_250M931, complete genome) position: , mismatch: 10, identity: 0.688

gccccgggttggccgccgctgaggatctggcg	CRISPR spacer
tgtcaaaattggcctccgcagaggatctggcc	Protospacer
  .* ...****** **** ***********

186. spacer 1.1|860188|41|NC_009943|CRISPRCasFinder,CRT matches to NZ_CP020371 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs417, complete sequence) position: , mismatch: 11, identity: 0.732

cgccacgccgggagcgccgcaccccagtgcggcacccccgg	CRISPR spacer
tcggacgatgggagcgccgcaccccagtgcggcgcggcctc	Protospacer
.   *** .************************.*  **

187. spacer 1.1|860188|41|NC_009943|CRISPRCasFinder,CRT matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 11, identity: 0.732

cgccacgccgggagcgccgcaccccagtgcggcacccccgg	CRISPR spacer
tcgaacgctgggagcgccgcaccccagtgcggcgcagtctc	Protospacer
.   ****.************************.*  .*

188. spacer 8.28|3591784|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP036405 (Komagataeibacter saccharivorans strain JH1 plasmid p221732, complete sequence) position: , mismatch: 11, identity: 0.656

gtggcctctggcgtgtcaccaagggtgcacgc	CRISPR spacer
ccggcttcgggcgtgtcaccaagggccggttt	Protospacer
 .***.** ****************.  .. .

189. spacer 8.28|3591784|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023037 (Komagataeibacter saccharivorans strain CV1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

gtggcctctggcgtgtcaccaagggtgcacgc	CRISPR spacer
ccggcttcgggcgtgtcaccaagggccggttt	Protospacer
 .***.** ****************.  .. .

190. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_016794 (Bacillus cereus F837/76 plasmid pF837_55, complete sequence) position: , mismatch: 11, identity: 0.656

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
tcaaaagaatcttatttttaaaaatccataac	Protospacer
  *******.************ **..    .

191. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_016772 (Bacillus cereus NC7401 plasmid pNC1, complete sequence) position: , mismatch: 11, identity: 0.656

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
tcaaaagaatcttatttttaaaaatccataac	Protospacer
  *******.************ **..    .

192. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033790 (Bacillus sp. FDAARGOS_527 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.656

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
tcaaaagaatcttatttttaaaaatccataac	Protospacer
  *******.************ **..    .

193. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to KX227758 (Bacillus phage PfNC7401, complete genome) position: , mismatch: 11, identity: 0.656

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
tcaaaagaatcttatttttaaaaatccataac	Protospacer
  *******.************ **..    .

194. spacer 8.33|3592089|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to KX227759 (Bacillus phage PfIS075, complete genome) position: , mismatch: 11, identity: 0.656

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
tcaaaagaatcttatttttaaaaatccataac	Protospacer
  *******.************ **..    .

195. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_016794 (Bacillus cereus F837/76 plasmid pF837_55, complete sequence) position: , mismatch: 11, identity: 0.656

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
tcaaaagaatcttatttttaaaaatccataac	Protospacer
  *******.************ **..    .

196. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NC_016772 (Bacillus cereus NC7401 plasmid pNC1, complete sequence) position: , mismatch: 11, identity: 0.656

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
tcaaaagaatcttatttttaaaaatccataac	Protospacer
  *******.************ **..    .

197. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033790 (Bacillus sp. FDAARGOS_527 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.656

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
tcaaaagaatcttatttttaaaaatccataac	Protospacer
  *******.************ **..    .

198. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to KX227758 (Bacillus phage PfNC7401, complete genome) position: , mismatch: 11, identity: 0.656

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
tcaaaagaatcttatttttaaaaatccataac	Protospacer
  *******.************ **..    .

199. spacer 8.34|3592150|32|NC_009943|CRISPRCasFinder,CRT,PILER-CR matches to KX227759 (Bacillus phage PfIS075, complete genome) position: , mismatch: 11, identity: 0.656

agaaaagaaccttatttttaaatattttgttt	CRISPR spacer
tcaaaagaatcttatttttaaaaatccataac	Protospacer
  *******.************ **..    .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1186966 : 1195964

Enterobacteria_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012174437.1\|1186966_1188874_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	2.0e-23	29.7
WP_153304487.1\|1188995_1190030_+	dTDP-glucose 4,6-dehydratase	A0A1D8EQC0	Escherichia_phage	6.7e-74	43.8
WP_012174439.1\|1190053_1190932_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.1e-96	60.1
WP_012174440.1\|1190934_1191498_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.6e-45	51.1
WP_012174441.1\|1191767_1193480_+	bifunctional sulfate adenylyltransferase/adenylylsulfate kinase	A0A2K9L0F0	Tupanvirus	1.6e-88	33.6
WP_012174442.1\|1193508_1194156_-	ABC transporter auxiliary component-like protein	NA	NA	NA	NA
WP_012174443.1\|1194189_1195155_-	MCE family protein	NA	NA	NA	NA
WP_012174444.1\|1195202_1195964_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	2.3e-23	32.2

DBSCAN-SWA_2

2527839 : 2534000

Staphylococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012175492.1\|2527839_2528313_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.4e-34	60.4
WP_012175493.1\|2528431_2529646_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	8.6e-97	47.5
WP_012175494.1\|2529707_2530358_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.5e-34	40.0
WP_012175495.1\|2530357_2531449_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.4e-42	33.1
WP_012175496.1\|2531520_2531976_-	transcriptional repressor NrdR	NA	NA	NA	NA
WP_012175497.1\|2531991_2532459_-	cytidine deaminase	E3T5C5	Cafeteria_roenbergensis_virus	4.1e-23	40.5
WP_041281080.1\|2532451_2533705_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	8.9e-97	52.6
WP_012175499.1\|2533769_2534000_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	2.0e-07	36.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_009943

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection