CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010424	Candidatus Desulforudis audaxviator MP104C, complete sequence	6 crisprs	DinG,c2c10_CAS-V-U3,c2c9_V-U4,cas14k,RT,cas3,cas4,cas2,cas5,cas7,cas8b2,WYL,cas6,TnpB_regular.1,DEDDh,cas14i,csx1,csx21,csm3gr7,csx19,csm2gr11,csx10gr5,cas10,cas1,cas8b1,cmr6gr7,cmr5gr11,cmr4gr7,cmr1gr7,cmr3gr5,csx15,csa3	0	9	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010424_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010424_1

325724-325805

Orphan

Consensus_repeat	Method
AAAAAGGTGTCAGACACCTTTTTGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010424_1

>merge|NC_010424|1|325724-325805|CRISPRCasFinder
AAAAAGGTGTCAGACACCTTTTTGGTCACCCGGGAGAGGAGAAAGTCAGGGAAGGTAAAAAGGTGTCAGACACCTTTTTGGT

>NC_010424|1|1|325724-325805|CRISPRCasFinder
AAAAAGGTGTCAGACACCTTTTTGGT	CACCCGGGAGAGGAGAAAGTCAGGGAAGGT
AAAAAGGTGTCAGACACCTTTTTGGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010424.1\|WP_012301456.1\|330031_331213_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_010424.1\|WP_041571033.1\|311894_312443_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NC_010424.1\|WP_012301452.1\|325823_326891_+\|bifunctional-phosphoglucose/phosphomannose-isomerase	unknown	unknown	gnl\|CDD\|181536
NC_010424.1\|WP_012301449.1\|321582_322392_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|319818
NC_010424.1\|WP_012301448.1\|319517_321362_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NC_010424.1\|WP_012301444.1\|312403_312727_-\|DUF2508-family-protein	unknown	unknown	unknown
NC_010424.1\|WP_041571035.1\|327904_328846_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|224398
NC_010424.1\|WP_012301451.1\|323684_325691_+\|glycogen-debranching-protein	unknown	unknown	gnl\|CDD\|130624
NC_010424.1\|WP_012301459.1\|333704_334988_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_010424.1\|WP_041570717.1\|314188_314383_-\|hypothetical-protein	unknown	unknown	unknown
NC_010424.1\|WP_041570718.1\|331226_331997_+\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NC_010424.1\|WP_012301455.1\|328966_330004_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|236079
NC_010424.1\|WP_012301447.1\|316619_319460_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NC_010424.1\|WP_012301453.1\|326903_327788_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NC_010424.1\|WP_012301445.1\|312822_314100_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380478
NC_010424.1\|WP_012301446.1\|314561_316586_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NC_010424.1\|WP_012301458.1\|331993_333523_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NC_010424.1\|WP_012301461.1\|335441_337490_+\|sodium-translocating-pyrophosphatase	unknown	unknown	gnl\|CDD\|234827
NC_010424.1\|WP_012301450.1\|322435_323401_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NC_010424.1\|WP_041571036.1\|335094_335322_+\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|377143

Protein	Function_ID	Function_description	E-value
NC_010424.1\|WP_012301456.1\|330031_331213_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_010424.1\|WP_041571033.1\|311894_312443_+\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	2.52695e-86
NC_010424.1\|WP_012301452.1\|325823_326891_+\|bifunctional-phosphoglucose/phosphomannose-isomerase	gnl\|CDD\|181536	PRK08674, PRK08674, bifunctional phosphoglucose/phosphomannose isomerase; Validated.	3.14956e-170
NC_010424.1\|WP_012301449.1\|321582_322392_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|319818	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily. Escherichia coli Cof is involved in the hydrolysis of HMP-PP (4-amino-2-methyl-5-hydroxymethylpyrimidine pyrophosphate, an intermediate in thiamin biosynthesis), Cof also has phosphatase activity against the coenzymes pyridoxal phosphate (PLP) and FMN. Thermotoga maritima TM0651 acts as a phosphatase with a phosphorylated carbohydrate molecule as a possible substrate. Escherichia coli YbhA is also a member of this family and catalyzes the dephosphorylation of PLP, YbhA can also hydrolyze erythrose-4-phosphate and fructose-1,6-bis-phosphate. Members of this family belong to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.98234e-84
NC_010424.1\|WP_012301448.1\|319517_321362_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_010424.1\|WP_041571035.1\|327904_328846_+\|DNA-binding-protein-WhiA	gnl\|CDD\|224398	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown].	1.66294e-95
NC_010424.1\|WP_012301451.1\|323684_325691_+\|glycogen-debranching-protein	gnl\|CDD\|130624	TIGR01561, glycogen_debranching_enzyme, glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	9.51047e-161
NC_010424.1\|WP_012301459.1\|333704_334988_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_010424.1\|WP_012301458.1\|331993_333523_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NC_010424.1\|WP_041570718.1\|331226_331997_+\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	4.2815e-148
NC_010424.1\|WP_012301455.1\|328966_330004_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|236079	PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated.	1.85326e-168
NC_010424.1\|WP_012301447.1\|316619_319460_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NC_010424.1\|WP_012301453.1\|326903_327788_+\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	4.15079e-164
NC_010424.1\|WP_012301445.1\|312822_314100_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380478	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	5.87035e-29
NC_010424.1\|WP_012301446.1\|314561_316586_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NC_010424.1\|WP_012301461.1\|335441_337490_+\|sodium-translocating-pyrophosphatase	gnl\|CDD\|234827	PRK00733, hppA, membrane-bound proton-translocating pyrophosphatase; Validated.	0
NC_010424.1\|WP_012301450.1\|322435_323401_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	3.00209e-72
NC_010424.1\|WP_041571036.1\|335094_335322_+\|preprotein-translocase-subunit-SecG	gnl\|CDD\|377143	pfam03840, SecG, Preprotein translocase SecG subunit.	1.59929e-11

>NC_010424.1|WP_012301451.1|323684_325691_+|glycogen-debranching-protein
MHFGKADWRDFDRGTEKEWLVTNGLGGFGCGTLIGANTRRYHGLLVAALTPPTGRLLLWSKLDERFVAGGEVFNLAVNQAGGRVTESGFIHLQRVKVDPFPQFVYAFRDVSVEKTVFMVHGKNATVVVYRVRNGAAPARMILVPLVNCRDYHGNTYRDQVSFDVRQGARGVEVQPAAGGPILHLRATAGDFTLQPDWYLGVYYAAEAERGLNPSEDHFIPGFFEVEFGPGEERVFAVTGGLEPLDLNPEAALREQRARLDELVRRAGYDDWFARRLVRAGDAFIAHRRSTGKTTIIAGYPWFTDWGRDAMIALPGLTLVTKRFATAREILETFARYAEGGLIPNFFPDSGERPLYNTVDAALWFCHAAYRYLVYTGDDSFIRKHIWPVLQDIIKCYFEGTEYNIGADADGLIRAGGPGVQLTWMDAKVNDWVVTPRHGKPVEVQALWYNALRVSETLGRRYGLPEAGPGLAGKVRESFRREFWRPEGDYLYDVVGDEEKDGSLRPNQILSLSLAFPVLDPVREGRNIVRAVWRELYAHYGLRSLAPRDPRYRGVYRGDRLARDGAYHQGTAWSWLMGPFITAYRRVHGYSYASRVRAGAFLAPFRDHLRDHGIGSVSEIFDGDEPVVPRGCFAQAWGVAEVLRAYVEDVLEESPETQRIMAEELRTGG
>NC_010424.1|WP_012301450.1|322435_323401_+|ROK-family-protein
MPGYVVGVDLGGTKIYTLLATVEGTVAAEAEVPTAAGRGYEAVLDQIADTVVAVAAQAGVKPENVRAVGVGAPGPLDPDTGIVHQAPNLGWKEAPLRADLEARLQLPVCLENDANLGALGEHTFGAGRDCNELVYVTVSTGIGGGLILRGEIYGGVGGGAGEIGHITVVPGGPGCRCGSRGCLEAVASGTAIALRARELLDKGAGAGAGILALAGGEAEAVTAATVARAAEAGDPEARAILDEAAWHLGTGLAAVVNLLNPCRIVLGGGVMKSGRLLWDRMDRSLREQALDAAYRRVRLVPGALGARAGALGAVTLALRSR
>NC_010424.1|WP_012301449.1|321582_322392_+|Cof-type-HAD-IIB-family-hydrolase
MPDYRLVAVDLDDTLLTSGLEVSPRAGRAISRAQALGVVVTLATGRMYLSAVPFARRLGIDAPIITYQGALVKHPVTGAELLHRALANDTARAVIERLRAYGYHLNVYLDDQLYMEVLTELGKRYADLSRVEAHPVGDLLVYLGDRNPTKVLAIGGEDEIERLEQEMIALFPAERVHITRSKPKFLEFSHPLATKGRALQYLAAYYGIPREAVMAIGDGYNDLDMVAWAGLGIMMDNARDEVKRYADHVTASNDADGVAEAIERFVLGR
>NC_010424.1|WP_012301448.1|319517_321362_+|excinuclease-ABC-subunit-UvrC
MEPAEKVKHFPDKPGVYLFRGARGEVLYVGKAVSLKNRVRSYFTGARSDKVQALVGKTRDVECLVTGSEIEALILESNLIKEHRPRYNVVLKDDKSYPYLKVTVQEEYPRIFLTRAQPRDGARYFGPYPSAAAVHETVRLLKKLFPLRSCRQTRFRQQRPCLNHHIGRCLGPCSGTVDPERYRAMVQEVLLFLEGRHADLVRGLARKMEAAAANLEFERAAELRDQLRAVEQVLARQSIVSPGREDRDVLALARDGNRGRVIVLEIRDGKLLGRHSLDLQGIAERSDAEVLAAFLKQYYREAGLIPPEVLLPVPLGEEQGLIAEWLGLRRQGRVRLHVPRRGRKRELVRLAEQNAAEARAQMEFERDAGEALAELAAVLGLDQAPARLEGYDISNLQGAQTVGVMVVFEDGRPAPGEYRQFRVRETAGTPNDFAAMREVVARRFARAREEGKLIATGRLSSRDARFHRLPDLVLVDGGKGQLSAALEGLRETGFEAVPVFALTKEEEKIFAPGRSDPVPVPPGSQALFLLQHLRDEAHRFAVDTHRRTRSRESLRSLLEEIDGIGPARRRALQKAFPSLDALKGATLAELAAVPSMNRKAAQAVYDYFQDTPTE
>NC_010424.1|WP_012301447.1|316619_319460_+|excinuclease-ABC-subunit-UvrA
MQDKIVVRGARVHNLKNIVVEIPRNKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDYIEGLSPAISIDQKTRSHNPRSTVGTVTEIYDYLRLLFARVGRPHCPHCGHPISSQTVEQMVDQVMALGEGTRLQILAPVVRGKKGEHVRVLEEARRGGFVRMRIDGEMREIGEDISLDRNKKHTIEIVVDRLVVKPGLEPRLADSLETALKQTGGLAVCAVIDGPEIVFSQNFACVDCGFSFSEITPRLFSFNSPVGACPTCTGLGSRLEVDVDLVIPDRNKTLYEGAVAAWAWWTRGYHILEGLARHYGFSLQVPVRELDPDHLDIILYGTGGTRISFSYRDMTGRLRRYTAPFEGVVSFLSRKHRETTSDHVREETERMMRTRPCPDCGGRRLKPEALAVKVGGKSIAEVAALSITAADRFFAGLNLTARETLIGQRVLKELRARLGFLVNVGLDYLTLDRQAATLSGGEAQRIRLATQIGSGLVGVLYILDEPSIGLHPRDNGRLLDTLKQLRDLGNTLIVVEHDEETIRAADHIIDIGPGAGLDGGRVVAAGTLREITGTDASITGQYLAGRKFIAVPPARRAPGERWVEVIGAREHNLNNIDVPFPLGVFTCVTGVSGSGKSTLVNEILNKALAAALHGTRTHPGVHDEIRGTEHLDKVINVDQSPIGRTPRSNPATYTGVFTDIRELFALTPEARMRGYKPGRFSFNVRGGRCEACRGDGIIRIEMHFLPDVYVPCEVCGGRRYNRETLDVRYKGRTIADVLDMTVDQAAEFFAPVPKIYRRLCTLQDVGLGYIRLGQPATTLSGGEAQRVKLAAELSRRATGRTLYILDEPTTGLHFADIKKLLQVLQRLVDAGNTVIVIEHNLDVIKTADYIIDLGPEGGDRGGRVVATGTPEEVAAQAESYTGRFLRRVLDRTPGRAAAEA
>NC_010424.1|WP_012301446.1|314561_316586_+|excinuclease-ABC-subunit-UvrB
MPPFKLVSDYVPRGDQPQAIENLVRGLERGLRHQVLLGVTGSGKTYTMAQVISRVQRPTLVIAPNKTLAAQLCAEFKEFFPENAVEYFVSYYDYYQPEAYLPSSDMYIEKDASINEEIDKLRHSATSSLFERRDVIIVASVSCIYGLGDPEEYRNLVVSLRRNGGYDRDAVLRKLVSIQYERNDINFGRGRFRVRGDVLEVFPAASGERALRIEFFGDEVERILEFDALTGEVLGERQHVSILPASHYATSKDRLDRAVTAIETELTERLAELRAANKLLEAQRLEQRTNYDLEMLRELGYCKGIENYSRHLTGREPGAPPFTLLDYFPDDLLIIVDESHITIPQIGGMYEGDRSRKVALVEHGFRLPSAFDNRPLTFSEFMARVRQGVYVSATPGPWELKHSAAVVEQIVRPTGLVDPEMVVRPTRGQIDDLLGEIRQRVARNERVLVTTLTKRMAEDLCDYFRELGLKVRYLHSEINTLERMEILRDLRLGTFDVLVGINLLREGLDLPEVSLVAVLDADKEGYLRSERSLIQTAGRAARNLNGKVILYADQITGSMRRALDETERRRERQMAFNRAHGITPQTVQKAVRSVIEATRAAETQAPYYAVSEKRLTRSELKKLIARLEKDMRYAARHLEFERAAQLRDALIELRLQLQPKGVRSLRPAVGDEPE
>NC_010424.1|WP_041570717.1|314188_314383_-|hypothetical-protein
MRIQRDRLVIGFTAGVIAGITMPQTAFPGMGGTAFFMIIAEIDWADQKHNIVVAARKRHTRRAA
>NC_010424.1|WP_012301445.1|312822_314100_+|sugar-ABC-transporter-substrate-binding-protein
MPRTKTTIVLLLIAFVLLGTGGCGLLNRGGAARPAERPLAVAYSIADERRDGNQVIKRLVQERAGTDERVRITWRDAEGDARRQEKDVEQFIEQKVDAVVIQFVEPQMGPGIVRRLAMNRIRVVALETFAPDAPLDAYVASEQVRAGEHQARFVVRNLPAGAPGRVLVLGGDPTDPISRNIIEGFTAFMEGQPGFAVELREHPQGDPGRAAASVHEALATGPLGAVLAVDSRMAVSAVEVLRQRGLLNEVMTVGVGADRTAAEALVAGDHDAEVDVRPDLLAQFSYDAAVGLARDGHWAYETQITSGDYTVPARMVPVRLVQGNNTFLLREYYGDLTRGGGQQGGKERQGGGGQGQGQQGGGQQQGQQQGQQQQQPMTKLMIKTQDGKTVEIDVPGEIKSIEAQRQGGQQGGQNGGQGGGQGGGS
>NC_010424.1|WP_012301444.1|312403_312727_-|DUF2508-family-protein
MLSMRGPEPNPLLEAIEKAREECKEAEMMLTHAEPDFIDHAVNRINAARSQLEALIRAAKKQGLQAWAELRPLAEYRPDEDEEALKNKKPTSMGGQLKSFFRGTISR
>NC_010424.1|WP_041571033.1|311894_312443_+|uracil-DNA-glycosylase
MMSDCRECGLHAGRTNLVFGEGHPRARLMLIGEGPGAEEDRLGRPFVGAAGRLLDRILDAAGLARTEVYIANVVKCRPPGNRVPNREEAQACLRWLRKQFSLIGPPLVVILGSTALKNLIDPGASITAWRGQWIVRGRVRFMPTYHPAALLRDPGKKRDVWRDFQLIRDAYREIVPLKNDLS
>NC_010424.1|WP_012301452.1|325823_326891_+|bifunctional-phosphoglucose/phosphomannose-isomerase
MVSGVLDNPRELSALDSMGMFQAAWNLPEQCEKAWSLVGEASLPEVADWRQILVTGLGGSAIGGDLLRVFAADKLHLPVLVNRDYTLPWFVNKYTFVFAVSYSGNTEETLSAYDAARERGASVVAITAGGKLGEKAAADGQTVIRVPGGIAPRAATGYLFIPMVAVLERLGFFSGMQAEVEGLSAHLQELRDRYGPQTATRENLAKQLALNLQGRLPVIWGASGTTEVVAQRWKGQFNENAKAPAYWNVFPELNHNEVVGFEQPEDLLGRIWIIILKDDADHPRVRLRMKITREMVSKAAGLTEVFASGPTELARLYSLIYLGDYASMYVAALAGIDPGPVRVIDYLKNELAKHE
>NC_010424.1|WP_012301453.1|326903_327788_+|RNase-adapter-RapZ
MAGTRLLIVTGLSGAGKTQAVRCLEDLGFFCVDNLPPKLIPKFAELCAQTTGKIERIALVVDIRGGEFFATVLDVLKDLKNQGLRYEILYLEASNETLVRRFKESRRPHPLSTSGEIVEGIEAERLALRELRGLAHKIIDTSNFSVAQLKQEIANLYGGNEDRERLAITAVSFGYKYGIPLDADLVIDVRFLPNPHYEPQLQPLTGLDEPVREYVFEAPTTSEFLSHLVNLFDFLIPQYIREGKTTLTLAIGCTGGKHRSVVLADWLGEQLRERKHRIVVRHRDLGRDVSGTNY
>NC_010424.1|WP_041571035.1|327904_328846_+|DNA-binding-protein-WhiA
MSFSAHTKDELARIEGLPSCCRLAELAALAKLNGRLVHGPAELLIVTENAAIARKVFKALKMQFRLAARVEIRRKPRLKKNNEYLVRIGNQDGLGPALEEMGLCTVSLRVRPGLKRDLVRRECCRRSYLRGAFLARGSVSSPRGSYHLEITVGDQRMAADLSGLMRKVGLEGRLSPRKRGWIVYLKDGEQVADALKLMGAHAALLDFENARVYKDMRNRVNRLVNCDTANLGKTVSAGVRQEEHIRLVVQRFGLETLSPPLRQVARLRLQYPEVSLRELGELAQPPLSKSCVNHRLRKLEQIAEHILASRTRN
>NC_010424.1|WP_012301455.1|328966_330004_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTVRLAINGFGRIGKLVMRAALAREDVEVVAVNHKSRRLVATPEYAESLLYSLRHDSVHGRFHSEIAARGDVLLFRGKEIKVLAEGDPAALPWAELGADIVIESTGVFKDAARAGGHLRAGGRKVIITAPAVDADLMVVMGVNHHLYDPERHHIVSNASCTTNCLAPVAKVLHERFGIRKALMNTVHAYTNGQQLLDMPYRDPRRGRAAALSIVPTTTGAAKAVGRVLPELEGRINGYALRVPVPNVSVVDLVAELEQEAAEEEINAALREAAAGELKGILAFEDTPLVSVDYIGDPHSATIDGPSTMVLGGNLVRVVAWYDNEWGYSCRVVDLAVYIASRGFPE
>NC_010424.1|WP_012301456.1|330031_331213_+|phosphoglycerate-kinase
MLKKTIRDVDIAGKRVFVRVDFNVPFNERGEVADDTRIRAVLPTIEYLLTGGAAVILASHLGRPKGKRDDRFSLRPVADRLSALTARQVRFAAEAVGPETEAASRELAPGDILLLENIRFYPEEEQNDPEFASRLAALADLYVNDAFGTAHRAHASTAGIAAHLPAVAGLLLERELDILGRLLSVPERPFVALIGGAKISDKIGVLERLIEKADYLLVGGGMANTFLAAQGHNLQASLVEADRLETARYLLAKAGPGERITLPIDLVVAPDREQPEKRATVAVESIPAGWAAFDLGSGTVRLYANRLRPARTIFWNGPVGLFEVPGFDRGTLDLARVIAAAEATTVVGGGDTVAAVKQAGVLDQVTHVSTGGGASLKLLEGRELPGVAVLQNR
>NC_010424.1|WP_041570718.1|331226_331997_+|triose-phosphate-isomerase
MRQPIIAGNWKMYKTPSEAVEFVRRLQEASAGVDNVEIVVAPPFPALVPVAGVLAGSFIGLAAQNMFWEAEGAFTGEVSPVMLAEIGCRYVILGHSERRQYFGETDANVNRKAWAALDRGLVPIVCVGESLDEREAGRTEKVVTAQIQGCLAGLPADAVAGLVIAYEPVWAIGTGRTASPADAQEVSARIRALVAELFGREAADRVRIQYGGSVKPENTRALISQPDIDGALVGGASLKVESFAGIIRETGGAVGR
>NC_010424.1|WP_012301458.1|331993_333523_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MSPNTPLVLVILDGWGCGDRVEGNAIAQADTPNWNRYRSVWPRTVLKCSGEDVGLPPGQMGNSEVGHLNLGAGRIVYQDLTRITRAVRDGSFFENAVLRTSIEASRRNGHALHLMGLLSDGGVHSHISHLFALLELAGRLDQRSVYVHAFLDGRDVPPANALEYVEALEDKLKTLGYGAVASVIGRYYAMDRDRRWERTARAYRAMVYGEGLRASSARQAVEKGYERGETDEFIQPTVIVRDGRPVAQVRDGDALVFFNFRPDRARQITRSFTDAEFGGFERGPAPAFPDFVCLTQYDRTIVAPVAFGPQELTNTLGNVLSRHGLRQLRLAETEKYAHVTFFFNGGVEQRDPGEDRLLIPSPKVPTYDLKPEMSAREVTDAFLANIEKYDIIIMNYANPDMVGHTGDLSAAIKAVETVDECLGRVVEAVLARGGTVLVSGDHGNAEHMCDAEGCPLTAHTCNPVPLLIIGEAVAGRSLRPGSLQDVAPTILDLLGLPKPPEMTGTSLLS
>NC_010424.1|WP_012301459.1|333704_334988_+|phosphopyruvate-hydratase
MSTFIADIFAREILDSRGNPTVEVDVILDDGTLGRAAVPSGASTGTFEAVELRDGDMHRFLGRGVSRAVANVNAIIAPEITGADATDQVAIDTALIELDGTENKSKLGANAILGVSLAVCKAAANGVGLPLYRYLGGTHARELPVPQLNILNGGRHADNNLDIQEFMIVPVGASTFAGALRCGVEVYHALKKVLKSRGLGTTVGDEGGFAPFLESHAQALDLILEAIRTAGYRPGEDVLLALDAAASEFFREGRYHLAGENRTLTAGELIGYYEELIQNYPIISIEDGLAEEDWEGWRELTARLGGRVQLVGDDLFVTNPQRLERGIASKIANSILIKVNQIGTVTETLETISRARRAGYTAVISHRSGETEDVTIADLAVATGAGQIKTGAPCRTERVAKYNHLLRIEEELGETAVFRGRRNFYHL
>NC_010424.1|WP_041571036.1|335094_335322_+|preprotein-translocase-subunit-SecG
MLKSIVMGIHALIALALIAVILLQSGKSAGLSGAIAGGAETFFGKKKGLDQFFGKVTVVLAVIFGLLSVVLTVWK
>NC_010424.1|WP_012301461.1|335441_337490_+|sodium-translocating-pyrophosphatase
MDVNLIPWIGVGASLLAILFALYLTSWLMGRPAGTEKMQSISKAVQEGAMAYLARQYKTIAVVGVIVAVALFLALDWQTAFAFVVGAFFSGLCGFIGMSVSTRSNARVAEAAKQGLSYGLNVSFKAGTVTGMMCVGLALLGLSGVFIAFYDPNNVSQAVHALVGLGFGGSLIALFARIGGGIFTKSADVGADLVGKVEAGIPEDDPRNPATIADNVGDNVGDCAGMAADLFETYAVTAVGAMLLGYLIFGGALEYILYPVALGAVAIVASIIGVFFVRLGGSTNIMSALYKGVWVSAILALIGFYPITAWMLGDVTMFFAAIVGVVATVLIMYITDYYTSKNYRPVRSIAHASQSGHGTNIITGLSVGMESAIPPTLMIVAGILAAYYVGGGGGEGVYAIGIASMAMLSMCGMIVALDSYGPVTDNAGGIAEMADLPPEVRNVTDALDAVGNTTKAVTKGYAIGSAALAAIVLFADYVNALKKASAGAGAAAEYVFKLGDPLVLAGLFIGGAVVFMFSSLANGAVGRAAFSVVEEVRRQFREIPGIMEGTAKPEYGRCVDIVTKRALKEMVVPGLIPVVTVLLVGFILGPLALGGVLIGVIVVGIYMACFQNNAGGAWDNAKKWIEEGMYGGKGSEAHKAAVTGDTVGDPLKDTAGPAVNPVIKVVNVVALLMVPLIFHIVR

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Crispr_ID: NC_010424_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010424_2

1355523-1359324

Unclear

Consensus_repeat	Method
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	PILER-CR
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CRISPRCasFinder
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CRT

51 spacers

cas4,cas2,cas3,cas5,cas7,cas8b2,WYL,cas6

The CRISPR arrays of NC_010424_2

>merge|NC_010424|2|1355523-1359324|PILER-CR,CRISPRCasFinder,CRT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACGCAGGTGGGCCGGTGGGCCAGACAAGGAGAACATTGATTCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTACATATCAGGCAACGGCGTTCGGGGGAAGCTTCGCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACGGTGCCGTGACTTTTTAGAAGCCCCGGAAAAACCGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCTACTCACCGACCCCTACCATTTCAACCGCAACCTGTCGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACAGAGCGTTTGCGCTGCCTGCCATAACAGGAAGCACCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACAGGCGGTACGTCCTGCAGGAATGGCGGTGCGTCAGGGAAACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTGTTGCATGAAATGCAACACACTACCTTGGGGTGGTAGCTTTCAGTCCCCTTTTCGTTGGGTCGGTCGCTGAAACTGCTGGTGCCGCATCCCGGATCGGGGATGCTTGGATCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCGGGGCCTACCGCTATATCAACGCCGATGTGGTATACGACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACACAGAGCAGACTACACCATTTCCGGTAACAACATCCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACGGTGCCGGGGCAGGTGTCGGCGTTCGTGTCAGTACCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTCCACTGCAACCGATGGTTCGACAATCCGTGTTACGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTGGGAATCGGCCTAAACACGCTGTCGGACAAAATAAACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTCGGCAACGCCGTAGTTCCTCAAGTCGCCGAGGTAATCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTGCGATGAATCCTCAATCCTGAAAGCGTTTGACGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACACAACGCGCAACGGATCGCCGTAACCGGTACGGTCAACCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACAGTTGCTGAATTAAAATTTGAGTGCCGACTGGGAACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACAGCACGCACTTCTTCGTGTTCGACCTGAACCTACCCCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACGGATACAACCCACAACTTCGCTCAATCTCAAAAATAAACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACAGGTGATAGCTTATGCAGCGCAAGAAGCACGGGGCGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACGAACGCATATTGTAGTCGCAAATGTTACGAACTAAATCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCCGTTCAGCCGCAAGCACCTTCTGGCCCGGCGTGTTCGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTCGGCGGCGCAATGGAAGTGCAGAGCAGAACAATGATCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACAGTAACTCCATACGGTCCGGATCGATCTGACCAGTCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACAGCCTGGTGGATGCGCCAGCGGGCGCGACGATAATGGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACACTTTAGGAGACCAAGCTACTTATGCCTTCCTATGGCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACAGGGGCTGCGCGTCGAGATCGATCCGCCGAATACTACGGCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACATGTCGGCGCTGCGGAGTTGTGACATCGTGGTGCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCGGCCCAGGCATACACACAGCACTGGGAAGGTGGCATCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTTCCTCCCGCCTTTCGCGGGCTGCCAGATTCCGGCTCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCGCGGACGATCTTCTCTTGCCAGGGTAGTAATTCAAACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACGCTTGACTGAAACCAGTTACAAGTACGCCGCTTTGGACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACGCGCACGAAGTTGCCGGCCCAGGTGTGTCTGCTCAGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCATAATCGCAGGATGCCGGGGCCGGAGCAAAGCCGTCCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACAACCGAGACAAGGACATTGACGGTTCGGCTGCTGGCGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTGTTACAAATCCCAGCGGCAGTGCGTTTCGTTTCGGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTTAATTGGTTTTATCTGTCAAATTTGTGGTTGTACGGAACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACACCAGTCCCATGCGACATACTCCGCAAGTTCTTTACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCGCTTCTGGACACCTACCAGCCAACCCCTCGTAGAACCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTACGAGGAGCGCCTTCGTGCGAAGGCGGAAGGCAACACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCTTCGATCTTCGGCCAGCCGACCACGACCATGCTGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACGGACCCGGCATGCAACAACTCGTCCGCCGTCTTAACCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCGATTCTAGAGCCGGCGGTACGGGCGTTGCCCAATTACCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCGCACCGCCTTGTCCCCGACGACGTAATCCTTGGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACGCATACCGGACTACTACAAGGCAATTTTAACCCGCGGCCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACGCGCCGGCAATCGCCGGCCTTACTTGCAGGTGCTGGCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTCACCTGGTTTGCAACGCTCGCCGCGATACACAAGCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCGTCCAGGGCGGCCTCGAAAACCTGGCCGCCCTTCTCATCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACCAAGCTGCTCTGCGGGGATGGGTTGACCACACGTCCTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACAGCCGGGGATTGCGGGGAGGGTAAGAAAGGGGGAGAACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAACTTCGACGCTGGCCGGCTGGTCGCGGACGCCGAAGAAACTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC

>NC_010424|2|1|1355523-1359324|PILER-CR
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCAGGTGGGCCGGTGGGCCAGACAAGGAGAACATTGATT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TACATATCAGGCAACGGCGTTCGGGGGAAGCTTCGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGTGCCGTGACTTTTTAGAAGCCCCGGAAAAACCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CTACTCACCGACCCCTACCATTTCAACCGCAACCTGTCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGAGCGTTTGCGCTGCCTGCCATAACAGGAAGCAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGGCGGTACGTCCTGCAGGAATGGCGGTGCGTCAGGGAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGTTGCATGAAATGCAACACACTACCTTGGGGTGGTAG
CTTTCAGTCCCCTTTTCGTTGGGTCGGTCGCTGAAAC	TGCTGGTGCCGCATCCCGGATCGGGGATGCTTGGAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGGGGCCTACCGCTATATCAACGCCGATGTGGTATACGA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACAGAGCAGACTACACCATTTCCGGTAACAACATCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGTGCCGGGGCAGGTGTCGGCGTTCGTGTCAGTACC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCCACTGCAACCGATGGTTCGACAATCCGTGTTACG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGGGAATCGGCCTAAACACGCTGTCGGACAAAATAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCGGCAACGCCGTAGTTCCTCAAGTCGCCGAGGTAAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGCGATGAATCCTCAATCCTGAAAGCGTTTGACG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACAACGCGCAACGGATCGCCGTAACCGGTACGGTCAAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGTTGCTGAATTAAAATTTGAGTGCCGACTGGGAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGCACGCACTTCTTCGTGTTCGACCTGAACCTACCCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGATACAACCCACAACTTCGCTCAATCTCAAAAATAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGGTGATAGCTTATGCAGCGCAAGAAGCACGGGGCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GAACGCATATTGTAGTCGCAAATGTTACGAACTAAAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CCGTTCAGCCGCAAGCACCTTCTGGCCCGGCGTGTTCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCGGCGGCGCAATGGAAGTGCAGAGCAGAACAATGAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGTAACTCCATACGGTCCGGATCGATCTGACCAGT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGCCTGGTGGATGCGCCAGCGGGCGCGACGATAATGG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACTTTAGGAGACCAAGCTACTTATGCCTTCCTATGGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGGGGCTGCGCGTCGAGATCGATCCGCCGAATACTACGGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ATGTCGGCGCTGCGGAGTTGTGACATCGTGGTGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGGCCCAGGCATACACACAGCACTGGGAAGGTGGCAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TTCCTCCCGCCTTTCGCGGGCTGCCAGATTCCGGCTC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGCGGACGATCTTCTCTTGCCAGGGTAGTAATTCAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCTTGACTGAAACCAGTTACAAGTACGCCGCTTTGGA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCGCACGAAGTTGCCGGCCCAGGTGTGTCTGCTCAG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CATAATCGCAGGATGCCGGGGCCGGAGCAAAGCCGTCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AACCGAGACAAGGACATTGACGGTTCGGCTGCTGGCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGTTACAAATCCCAGCGGCAGTGCGTTTCGTTTCGG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TTAATTGGTTTTATCTGTCAAATTTGTGGTTGTACGGAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACCAGTCCCATGCGACATACTCCGCAAGTTCTTTA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGCTTCTGGACACCTACCAGCCAACCCCTCGTAGAAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TACGAGGAGCGCCTTCGTGCGAAGGCGGAAGGCAACA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CTTCGATCTTCGGCCAGCCGACCACGACCATGCTG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGACCCGGCATGCAACAACTCGTCCGCCGTCTTAAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGATTCTAGAGCCGGCGGTACGGGCGTTGCCCAATTACC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGCACCGCCTTGTCCCCGACGACGTAATCCTTGG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCATACCGGACTACTACAAGGCAATTTTAACCCGCGGCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCGCCGGCAATCGCCGGCCTTACTTGCAGGTGCTGGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCACCTGGTTTGCAACGCTCGCCGCGATACACAAG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGTCCAGGGCGGCCTCGAAAACCTGGCCGCCCTTCTCAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CAAGCTGCTCTGCGGGGATGGGTTGACCACACGTC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGCCGGGGATTGCGGGGAGGGTAAGAAAGGGGGAGAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TTCGACGCTGGCCGGCTGGTCGCGGACGCCGAAGAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC

>NC_010424|2|2|1355523-1359324|CRISPRCasFinder
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCAGGTGGGCCGGTGGGCCAGACAAGGAGAACATTGATT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TACATATCAGGCAACGGCGTTCGGGGGAAGCTTCGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGTGCCGTGACTTTTTAGAAGCCCCGGAAAAACCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CTACTCACCGACCCCTACCATTTCAACCGCAACCTGTCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGAGCGTTTGCGCTGCCTGCCATAACAGGAAGCAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGGCGGTACGTCCTGCAGGAATGGCGGTGCGTCAGGGAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGTTGCATGAAATGCAACACACTACCTTGGGGTGGTAG
CTTTCAGTCCCCTTTTCGTTGGGTCGGTCGCTGAAAC	TGCTGGTGCCGCATCCCGGATCGGGGATGCTTGGAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGGGGCCTACCGCTATATCAACGCCGATGTGGTATACGA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACAGAGCAGACTACACCATTTCCGGTAACAACATCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGTGCCGGGGCAGGTGTCGGCGTTCGTGTCAGTACC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCCACTGCAACCGATGGTTCGACAATCCGTGTTACG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGGGAATCGGCCTAAACACGCTGTCGGACAAAATAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCGGCAACGCCGTAGTTCCTCAAGTCGCCGAGGTAAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGCGATGAATCCTCAATCCTGAAAGCGTTTGACG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACAACGCGCAACGGATCGCCGTAACCGGTACGGTCAAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGTTGCTGAATTAAAATTTGAGTGCCGACTGGGAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGCACGCACTTCTTCGTGTTCGACCTGAACCTACCCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGATACAACCCACAACTTCGCTCAATCTCAAAAATAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGGTGATAGCTTATGCAGCGCAAGAAGCACGGGGCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GAACGCATATTGTAGTCGCAAATGTTACGAACTAAAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CCGTTCAGCCGCAAGCACCTTCTGGCCCGGCGTGTTCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCGGCGGCGCAATGGAAGTGCAGAGCAGAACAATGAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGTAACTCCATACGGTCCGGATCGATCTGACCAGT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGCCTGGTGGATGCGCCAGCGGGCGCGACGATAATGG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACTTTAGGAGACCAAGCTACTTATGCCTTCCTATGGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGGGGCTGCGCGTCGAGATCGATCCGCCGAATACTACGGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ATGTCGGCGCTGCGGAGTTGTGACATCGTGGTGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGGCCCAGGCATACACACAGCACTGGGAAGGTGGCAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TTCCTCCCGCCTTTCGCGGGCTGCCAGATTCCGGCTC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGCGGACGATCTTCTCTTGCCAGGGTAGTAATTCAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCTTGACTGAAACCAGTTACAAGTACGCCGCTTTGGA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCGCACGAAGTTGCCGGCCCAGGTGTGTCTGCTCAG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CATAATCGCAGGATGCCGGGGCCGGAGCAAAGCCGTCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AACCGAGACAAGGACATTGACGGTTCGGCTGCTGGCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGTTACAAATCCCAGCGGCAGTGCGTTTCGTTTCGG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TTAATTGGTTTTATCTGTCAAATTTGTGGTTGTACGGAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACCAGTCCCATGCGACATACTCCGCAAGTTCTTTA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGCTTCTGGACACCTACCAGCCAACCCCTCGTAGAAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TACGAGGAGCGCCTTCGTGCGAAGGCGGAAGGCAACA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CTTCGATCTTCGGCCAGCCGACCACGACCATGCTG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGACCCGGCATGCAACAACTCGTCCGCCGTCTTAAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGATTCTAGAGCCGGCGGTACGGGCGTTGCCCAATTACC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGCACCGCCTTGTCCCCGACGACGTAATCCTTGG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCATACCGGACTACTACAAGGCAATTTTAACCCGCGGCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCGCCGGCAATCGCCGGCCTTACTTGCAGGTGCTGGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCACCTGGTTTGCAACGCTCGCCGCGATACACAAG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGTCCAGGGCGGCCTCGAAAACCTGGCCGCCCTTCTCAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CAAGCTGCTCTGCGGGGATGGGTTGACCACACGTC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGCCGGGGATTGCGGGGAGGGTAAGAAAGGGGGAGAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TTCGACGCTGGCCGGCTGGTCGCGGACGCCGAAGAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC

>NC_010424|2|1|1355523-1359324|CRT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCAGGTGGGCCGGTGGGCCAGACAAGGAGAACATTGATT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TACATATCAGGCAACGGCGTTCGGGGGAAGCTTCGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGTGCCGTGACTTTTTAGAAGCCCCGGAAAAACCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CTACTCACCGACCCCTACCATTTCAACCGCAACCTGTCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGAGCGTTTGCGCTGCCTGCCATAACAGGAAGCAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGGCGGTACGTCCTGCAGGAATGGCGGTGCGTCAGGGAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGTTGCATGAAATGCAACACACTACCTTGGGGTGGTAG
CTTTCAGTCCCCTTTTCGTTGGGTCGGTCGCTGAAAC	TGCTGGTGCCGCATCCCGGATCGGGGATGCTTGGAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGGGGCCTACCGCTATATCAACGCCGATGTGGTATACGA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACAGAGCAGACTACACCATTTCCGGTAACAACATCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGTGCCGGGGCAGGTGTCGGCGTTCGTGTCAGTACC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCCACTGCAACCGATGGTTCGACAATCCGTGTTACG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGGGAATCGGCCTAAACACGCTGTCGGACAAAATAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCGGCAACGCCGTAGTTCCTCAAGTCGCCGAGGTAAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGCGATGAATCCTCAATCCTGAAAGCGTTTGACG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACAACGCGCAACGGATCGCCGTAACCGGTACGGTCAAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGTTGCTGAATTAAAATTTGAGTGCCGACTGGGAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGCACGCACTTCTTCGTGTTCGACCTGAACCTACCCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGATACAACCCACAACTTCGCTCAATCTCAAAAATAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGGTGATAGCTTATGCAGCGCAAGAAGCACGGGGCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GAACGCATATTGTAGTCGCAAATGTTACGAACTAAAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CCGTTCAGCCGCAAGCACCTTCTGGCCCGGCGTGTTCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCGGCGGCGCAATGGAAGTGCAGAGCAGAACAATGAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGTAACTCCATACGGTCCGGATCGATCTGACCAGT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGCCTGGTGGATGCGCCAGCGGGCGCGACGATAATGG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACTTTAGGAGACCAAGCTACTTATGCCTTCCTATGGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGGGGCTGCGCGTCGAGATCGATCCGCCGAATACTACGGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ATGTCGGCGCTGCGGAGTTGTGACATCGTGGTGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGGCCCAGGCATACACACAGCACTGGGAAGGTGGCAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TTCCTCCCGCCTTTCGCGGGCTGCCAGATTCCGGCTC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGCGGACGATCTTCTCTTGCCAGGGTAGTAATTCAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCTTGACTGAAACCAGTTACAAGTACGCCGCTTTGGA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCGCACGAAGTTGCCGGCCCAGGTGTGTCTGCTCAG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CATAATCGCAGGATGCCGGGGCCGGAGCAAAGCCGTCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AACCGAGACAAGGACATTGACGGTTCGGCTGCTGGCG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TGTTACAAATCCCAGCGGCAGTGCGTTTCGTTTCGG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TTAATTGGTTTTATCTGTCAAATTTGTGGTTGTACGGAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	ACCAGTCCCATGCGACATACTCCGCAAGTTCTTTA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGCTTCTGGACACCTACCAGCCAACCCCTCGTAGAAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TACGAGGAGCGCCTTCGTGCGAAGGCGGAAGGCAACA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CTTCGATCTTCGGCCAGCCGACCACGACCATGCTG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GGACCCGGCATGCAACAACTCGTCCGCCGTCTTAAC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGATTCTAGAGCCGGCGGTACGGGCGTTGCCCAATTACC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGCACCGCCTTGTCCCCGACGACGTAATCCTTGG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCATACCGGACTACTACAAGGCAATTTTAACCCGCGGCC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	GCGCCGGCAATCGCCGGCCTTACTTGCAGGTGCTGGC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TCACCTGGTTTGCAACGCTCGCCGCGATACACAAG
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CGTCCAGGGCGGCCTCGAAAACCTGGCCGCCCTTCTCAT
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	CAAGCTGCTCTGCGGGGATGGGTTGACCACACGTC
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	AGCCGGGGATTGCGGGGAGGGTAAGAAAGGGGGAGAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC	TTCGACGCTGGCCGGCTGGTCGCGGACGCCGAAGAAA
CTTTCAGTCCCCTTTTCGTCGGGTCGGTCGCTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010424.1\|WP_012302381.1\|1354279_1355383_-\|DUF3866-family-protein	unknown	unknown	gnl\|CDD\|379008
NC_010424.1\|WP_012302383.1\|1360517_1361090_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_010424.1\|WP_041570861.1\|1348778_1349837_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|179579
NC_010424.1\|WP_012302378.1\|1352392_1353280_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|274043
NC_010424.1\|WP_049752579.1\|1362880_1365259_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707
NC_010424.1\|WP_012302384.1\|1361086_1361407_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NC_010424.1\|WP_166485235.1\|1351181_1352351_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NC_010424.1\|WP_012302391.1\|1370178_1371174_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
NC_010424.1\|WP_041570862.1\|1349853_1351185_-\|pyrimidine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|274244
NC_010424.1\|WP_012302380.1\|1353582_1354212_-\|stage-II-sporulation-protein-M	unknown	unknown	gnl\|CDD\|131878
NC_010424.1\|WP_166485137.1\|1362701_1362848_-\|hypothetical-protein	unknown	unknown	unknown
NC_010424.1\|WP_012302389.1\|1367095_1368652_-\|hypothetical-protein	cas8b2	cls000029_cas8b2_CAS-I-B	unknown
NC_010424.1\|WP_012302388.1\|1366006_1367074_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_010424.1\|WP_012302374.1\|1346581_1348669_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223497
NC_010424.1\|WP_012302390.1\|1368964_1369975_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_010424.1\|WP_041570863.1\|1359558_1360479_-\|type-I-A-CRISPR-associated-protein-Cas4/Csa1	cas4	pfam06023_cas4_CAS-I	gnl\|CDD\|283640
NC_010424.1\|WP_012302372.1\|1339322_1343015_-\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NC_010424.1\|WP_012302379.1\|1353336_1353564_-\|hypothetical-protein	unknown	unknown	unknown
NC_010424.1\|WP_012302387.1\|1365242_1366010_-\|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl\|CDD\|273860
NC_010424.1\|WP_012302373.1\|1343007_1346505_-\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736

Protein	Function_ID	Function_description	E-value
NC_010424.1\|WP_012302381.1\|1354279_1355383_-\|DUF3866-family-protein	gnl\|CDD\|379008	pfam12982, DUF3866, Protein of unknown function (DUF3866). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 352 and 374 amino acids in length.	1.17288e-176
NC_010424.1\|WP_012302383.1\|1360517_1361090_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	7.01961e-28
NC_010424.1\|WP_041570861.1\|1348778_1349837_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|179579	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional.	0
NC_010424.1\|WP_012302378.1\|1352392_1353280_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	2.91423e-139
NC_010424.1\|WP_049752579.1\|1362880_1365259_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	8.20388e-71
NC_010424.1\|WP_012302384.1\|1361086_1361407_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	4.97748e-19
NC_010424.1\|WP_166485235.1\|1351181_1352351_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NC_010424.1\|WP_012302391.1\|1370178_1371174_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	1.14912e-09
NC_010424.1\|WP_041570862.1\|1349853_1351185_-\|pyrimidine-nucleoside-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NC_010424.1\|WP_012302380.1\|1353582_1354212_-\|stage-II-sporulation-protein-M	gnl\|CDD\|131878	TIGR02831, Stage_II_sporulation_protein_M, stage II sporulation protein M. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This predicted integral membrane protein is designated stage II sporulation protein M. [Cellular processes, Sporulation and germination].	1.81772e-31
NC_010424.1\|WP_012302388.1\|1366006_1367074_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	6.87624e-49
NC_010424.1\|WP_012302374.1\|1346581_1348669_-\|AAA-family-ATPase	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	2.03701e-16
NC_010424.1\|WP_012302390.1\|1368964_1369975_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	3.18591e-52
NC_010424.1\|WP_041570863.1\|1359558_1360479_-\|type-I-A-CRISPR-associated-protein-Cas4/Csa1	gnl\|CDD\|283640	pfam06023, Csa1, CRISPR-associated exonuclease Csa1. CRISPR (clustered regularly interspaced short palindromic repeats) elements and cas (CRISPR-associated) genes are widespread in Bacteria and Archaea. The CRISPR/Cas system operates as a defense mechanism against mobile genetic elements (i.e., viruses or plasmids). Csa1 is part of the archaeal subtype I-A system. Cas1 has not yet been enzymatically characterized.	1.12883e-78
NC_010424.1\|WP_012302372.1\|1339322_1343015_-\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_010424.1\|WP_012302387.1\|1365242_1366010_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	4.62774e-24
NC_010424.1\|WP_012302373.1\|1343007_1346505_-\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0

>NC_010424.1|WP_012302381.1|1354279_1355383_-|DUF3866-family-protein
MIRMRPGRVVEVAEQRPGVSEVLVDVEGRVERAVNYDLVTGPVGVGDRVVLNTAAVALGLGTGGVHFVMVNLERLEWDGPEAGHIMKLRYTPFQVQVLAVEEEASPHADRLRDCAGLDGLPVVAGSLHSMLGPFAAAVGELAPELRVVYLMTDGGALPLAFSRLVGQLKEAGLVHATVTCGHAFGGDFEAINVYSGLLAAREAGGADVILAAMGPGIVGTAQAFGFTGIEQGEIINAAGVLGGVPIAIPRISFADPRERHRGVSHHTLTALGRVALARALVALPRLDDAEAQAYLEAQLAAAGVSARHQVVVADGGPALTGLKRHGLNVTTMGRDRHTTPEFFLACGAAARLAVDVRRSRLKGPHQS
>NC_010424.1|WP_012302380.1|1353582_1354212_-|stage-II-sporulation-protein-M
MARIMRRFRLVALQGHWVVYLVVGLCFCGGLLAGGWAAGGLEAETAGELHDYLDRLFLNAYHSDFNARETFLEVTYNNLLFIALIFLAGITVIGIPVMLGLVAIRGFALGFAVWFVIGEMGGPGVVLVLAAIVPQNLLLIPAALFAAAAAVSFALLLVRRGFNPEVGVWSNFLRYSAMQLGAAGVAVSAAFVEAYLTPRIIGLLMSLPD
>NC_010424.1|WP_012302379.1|1353336_1353564_-|hypothetical-protein
MFIVVISQLKRKLLFALRLCLLVIIFTLLVIQIYGVFKTGAAPPAGPVTAGPAGAGGFLEQMVDWLKDYYRGNPW
>NC_010424.1|WP_012302378.1|1352392_1353280_-|site-specific-tyrosine-recombinase-XerD
MDEQLGLFLNHLHVERGLSENTLAAYRGDLQQFGAFLAAQGVRDLNDLQASHITAYLLAQKRLGRRPATVARRLSAVRAFLKFLTAEGLVTANPAEYTGSPKQAQRLPRVLRVDEVDRLLTAPDTANPMGLRDRALMEVLYASGLRVSEAVNLKVGDLDLRGGLVRCVGKGGRERVVPVGGEAVRLVDEYLARSRPLLLKGRRTRFLFVNRRGQPLTRQTVWKLLKRYAREAGIQKEITPHTLRHSFATHLLENGADLRAVQEMLGHADIVTTQIYTHLTSRGLRAVYDRTHPRA
>NC_010424.1|WP_166485235.1|1351181_1352351_-|phosphopentomutase
MIVLDSVGVGELPDAAAYGDAGTNTLANTARAVGGLSLPHLEALGLGNIIPVPGVPPASRPRAAYGKMATLSAGKDTTTGHWELAGLVLDRPFPVYPDGFPAALIAAFEARIGRPTLGNRPASGTAIIEELGAEHVRTGAPIVYTSADSVFQVAAHEEVIPVEELYRICRVARELLTGEHAPARVIARPFAGPPGRFVRTPRRKDFSLPPSGETILDALKKRGHAVVGVGKIGNIFAERGLTESFPTRDNEQGVDRTLAVLRTFPSGLVFTNLIEFDMLYGHRNDAHGYAAALAAFDRRLPEILGALATEDLLVLTADHGCDPTTAGTDHTREYVPLLALGPRLRGGVDLGTRASLADVAATVAEVFGFGWPVGTSFYGRLVPEGGGRP
>NC_010424.1|WP_041570862.1|1349853_1351185_-|pyrimidine-nucleoside-phosphorylase
MRMVDLILKKRAGGELSDAEIGFMIRGFVDGTVPDYQMAAFLMAVYFQGMTFREMADLTAAIVASGETIDLKAIPGIKVDKHSTGGVGDKTTLVLAPLVAACGVPVAKMSGRGLGHTGGTIDKLESIPGFRTDLGLAEVAGQVREIGLAVGAQTGDLTPADRLLYALRDVTATVDSIPLIASSVMSKKIASGADAVVLDVKAGTGAFMQKTEDALELARAMVQIGRQHGRRTVALVTAMDEPLGRAVGNALEVHEALAVLAGEDPPPDLVELCLVLAAHMVFLAGRAGSLDEAGALAQGALASGAAREKMRAWVRAQGGDPAVVDDPELLAKAPERTAVRAETGGWVQRIDARAVGQAALALGAGRTKKGEPVDPAVGVVLHHKVGSWVEPGAALATVHGAGRGEAEAAALVREAYVLAAEKTAPGPLVHAVVGDEEYENRAM
>NC_010424.1|WP_041570861.1|1348778_1349837_-|3-isopropylmalate-dehydrogenase
MQKTYKIAVIPGDGTGPEQVREGLKVLHAAAGKEGFALETTVLDWGGEYYLRTGEVLPPDAVEQLKRYDAIYLGAIGHPEVRPGILEKGILLRLRFELDQYINLRPVKLYPGVETPIAGKGPEDIDFVVVRENTEGLYAGSGGFLKRGTPDEVAIQTSINTRKGVERCVRFAFEYCRKRGGRRKVTLCGKTNVLTFAFDLWERVFNEVGEEYPDIERDYAHVDAICMWMVKNPEWFDVIVTDNMFGDIITDLGAMLQGGMGIAAGGNLNPEGVSMFEPIGGSAPKYTGKNVINPLAAVCAGAMMLEQLGETGAAARIEEAVKKVCAGHLKSLAAGRMGYGTDEVGDLVVSHL
>NC_010424.1|WP_012302374.1|1346581_1348669_-|AAA-family-ATPase
MKLLYLTDTHIRGDNPLHRRDDFPATVRAKLLEVAGLVRALEVDAVLHGGDFFDQPSPELSVVGDFIRIFIEMGVPIYVVQGNHDIFACNPDTLEHTMLGLLHRVGTLHVLRRGERVYLESRGVRVQLTGTPFHFNMDRVDPLADYCVTKEDCDYAVHLAHGMLLDKPFFPGTPHTLVSTVAPHTAADYTLGSHAHFGYPDVEWDGRWFINPGSLVRLSVQPGDIQRTPQVLLLDFTGSRPVHTKIPLKSARPGHEVLDAGLAAAAAGRDGPGTVFGRFDRPECCTYLEPSEVLRETARAGGFAPEVVAAAARCLARAEGSRERGAHLTHLVLENFQSHLHTEFELAPGLNVILGESGQGKSAIVRALRWLLCREPARDEYVRAGAPGCRVTAVCGDGRRLVREHRLAAAPDGAPGSAVPAGARFLPAGEEGLQCGGLLALDRETAICLSVAQEREGPFLLGLPGVLRARALERMSGAALFEAARENTAAGGGGADPEAVRALLALAAVRARDEALARAEEVVGRALSFVFDVPMEFKIALREERQPAEADFLVSSGRPADPTRCRGYPERVPPGTLGGGPTAAYLNVHGGGVGDVVSLALRVAFLEVARPAVPGPLVLDEPAQQVSHRFLSRVARLLKGFTDSFGRQVIVTTHNQPLSGTADAVFVLRIESGASAVHDRGSSIRASSWRGRPPG
>NC_010424.1|WP_012302373.1|1343007_1346505_-|helicase-exonuclease-AddAB-subunit-AddB
MALRFILGRAGTGKTRLCLEEIRKELRQAPDGPPLVFLVPEQATFQTEYALALTPGLSGMFRAQVLSFRRLAWRVFSEVGGAARPHVGDVGKRMMLARILARRRNELRLFGRAAGQYGFSGTLAGVLSELKTYLVTPEALEQAVRMLPGTAETDSLQAKLEDLRLLYTDFERELAGKYIDPDDYLTLLAARLGESPTLRAAEVWVDGFAGFTPQEYAVLEALLKAAARVNVALCLDPRSGRREDLELFQVTRDTRARLAELARKNGVELERPVELAGPPARFRANPALAHLEREFFRRPTKKFAGPPENLRLVAAASRRAEVEGAAREILRLSRERGWRWRDVSLVVRNLADYHELVATVFADYGIPCFIDRKRPVRHHPLVELIRSALETVTENWTYDPVFRYLKTDLVPVSRGDVDLLENYVLAHGIKGAKWADPEDWHYRRSDALNRPVPNGTGAPAPSDRDRYLREKVNRIRRRAARHLLDFQRRVQAAGTVRELTAALYDLLSDLDVPGRIEEWSREAETEGRLEAAREHRQLWDGVVELLDQVVETLGDEALTPEEYGRILDSGMDGLQLALIPPALDQVLVGSLERSRNPDIRAAFVLGVSEGVLPGRHGGTGLFTDREREVLLAAGLEVAPDTRRKVYEEQYLVYIALTRAGHYLWVSYPLADEEGGALAPSSVIPRLRELFPGLREETLALEPEGTAPGADLPYVTAPGRTLGFLVTRLRDWKSGVTVDPVWWSVFNWFAAHAGWRERCAPVLAGLFYENREPRLDPELTPELYGSRLVVSVSRLEEFRGCPFAHFARYALRLKERDVCRLAAPDIGLFFHAALKTFEDRLREAGMEWDALESADCTRLASAVVEELAPQLQSEVLLSSPRLRFLTGKLERVVERTAGVMAAHARHSRFQPVAVEVAFGPGRDVPGPAYPLPGGGSVELAGRIDRVDVAHTDNAAYLRVIDYKAGPRSLALDDVYYGLNLQLLVYLEAGLREAAALAGRECRPAGAFYFRVQNPLLKGGTPVPPAEVAPRLLKAFRLQGLVLDDPALLRLMDDAIGSESAIVPAGLKQDGTVKKKPGVVSAAQLERLQEHVRRVVAETAAEIQAGVVAIAPYRKGQANACRYCAFKPVCAFDPLLESNRYRQLRALTAGELWRLLGLPEEDEPGDE
>NC_010424.1|WP_012302372.1|1339322_1343015_-|helicase-exonuclease-AddAB-subunit-AddA
MSSRNWTGPQEAAIGCREKNLLVAAGAGSGKTAVLVERVIRRISDPAAPVDVDRLLVVTFTNAAAAEMRKRVAEALERELEKHPGMPLLEHQLRLLPQADITTIHSFCAELLRRYHYLIDLDPEFRVADETEAAILRQETLEEFFEEQYRVITGDPDLEFLVEAYGGERDDLKLQNLVSGLHRFARSNPWPEAWLARAAAFGADPQGLDGDGPLAWGLRDLVGTGLEAAVFELRAALEAAKAPGGPAVYADALAAEVEGTARLAGLVAGDWEPLRAAFLAFGFTPRLPAARAGVDQELKDLCSRCRKKAKERIQNLKETFFARRPEELLSEMAALGPAMRRLAALAADFGEAYRTAKLARNLVDFADLEHYCLQILLAPGSTPEAPVPSPVAAGLREYYVEVLVDEYQDINAVQETILRLVSRQDAAAPNLFMVGDVKQSIYRFRLAEPALFLEKYRAFDTGEDAGGARRIDLSHNFRSRESIIHAVNAVFRRIMTPAVGELAYDTAAELVCGGTPAQLEGSGPPVEVHLLGAPTSVGRDTAGTADDEPDRSDEADLTAVQREARLVAGIIRRLAGLGGECTVPYRDIVVLMRATTGKAGTYLEEFRRQNIPAYAKVGTGYFEAVEVETVLSLLKVIDNPHQDIPLAGVLRSPLVGLGAAELAAVRLADKEGDFFRAVVAAAGQGGRLGAVLAGFLERLEKWRSQARCGSLADLIWDVYRTTGYYDYVGGLPGGAGRQANLRALYDRARQYEATAFRGLFRFLRFIELLQEGGQDLGPAPALAESENVVRIMSIHQAKGLEFPVVILADMGRRFYMPDLNGEVLLHKDLGLGPYFVDPGARVSHPTAAWHVVRERLRREQLAEEMRILYVAMTRARERLILTGSAGRLEQAVLRWSHAAAGDGETLPVPVLAEAESFLDWVMPVLMAHPDGEPLRRLAVRSRPAAGTPKDRSRWEVHLHRPEDLEEAAGADPDTAAVLESLRRLAPIPADGGLDEAVHRALSWHYPWSALASCGAKISATEVKRRFAAAAAGEEEVPAVFPYRAPPARPAFLETARGLSPQAFGRAMHVVLQHLDLAGDLSVDGIRAQVAGLEEREFLTATEARAIDAEKLAGLFAGGLGRRLAGALWVRREWPFCLVVPAHEIYPGLEGHPEERVMVQGIIDCLFAEPDGLVLVDYKTDRVGPGGEAALADRYRGQLDLYARAVEAVLRRRVKERYLFLVMTGSAQIIQ
>NC_010424.1|WP_041570863.1|1359558_1360479_-|type-I-A-CRISPR-associated-protein-Cas4/Csa1
MYFLTEEEKKHLLKGLLPRSRELGIAEELRGWNWPAPPLQPVYDTVLALYEVANSYCPTNRDLYLRRVRRVFPAPSAAMVQGRVLHAALVHVLVSAKRLIYSVGVAQYQTICRELQELGPVNVESELQALAPEDAADLKRKVAIVTEFEKARIISRIQEILFKQPYIGEDSLAVLAIPVIVEQKLDGSFLGLSPNLSTDAFTVCEPMIVDLKFGERRDFHRLTTTGYALVMESLYEFPVNIGCLVYGSFRGDRLIINKDLHIIDDELRQWFIESRDEKARMVYEEIDPGFPAECYQGCHCYAACHG
>NC_010424.1|WP_012302383.1|1360517_1361090_-|CRISPR-associated-protein-Cas4
MMLKVSDVKQFLYCPRVVYFTYVMPVHRKVTRKMEYGKEEHLEIERLERRRGFRSYDLSEGERRYRTKLCSERLGVEGVLDMHIVCGSGCFPVEFKNTSRHPGLNHKYQLVCYAMLLEEQYGKPVRHGFLYLIPGKRVHVVEITPNARTFVRKTLDQIKMMIARESFPPAPRRPARCFECEYRNYCADVV
>NC_010424.1|WP_012302384.1|1361086_1361407_-|CRISPR-associated-endonuclease-Cas2
MKTLVSYDIVEDKVRRKVFEACKDYGLTNVQYSLFFGDMTHNRREELFQRLRRIIGRQEGKVLICPVCDKDLRLSKAIEVSAGMPEEAAEAAVSYPGRSRKKARAG
>NC_010424.1|WP_166485137.1|1362701_1362848_-|hypothetical-protein
MKNYNVDMLRQKATDIRRAQRVLAGYAAMGKEEFLADDTIVSSAKYQL
>NC_010424.1|WP_049752579.1|1362880_1365259_-|CRISPR-associated-helicase/endonuclease-Cas3
MLPDFDHIWAKSRVGKATSGETLVSHTQRVLANVVALHARMPELDQLSQMPRFWSRMALAAVLHDVGKCAGGFQKMLRGNGEFPFRHEVLSAAFLPWLLDNDPHQDLPWVAAGILSHHKDFSILERDFPPGCDWEEPPLSDSLEQVALDLDEEFFHLAPKMVLYGLLPLLKGCLLLASNERFILPASDGTFDRSTFPGFARRALDAYAQLVVRLRKEDARSSAALAGRFTRGVLILADHAGSAWQAFAKLESLASPAIMARVLDLPPPAKTGDEVYAHQTHASETPGCAVLVAPTGSGKTEAALLWAAANGRQTVGNPPLFYVLPYQASLNAMRSRLGERFGDDRVVLQHSRALQALYRQLLDRGYTPGEAKNQAEREINLGRLHVAPVRILTPYQLLRGAFQLRGHEAIWTDCAGGRIVFDEIHAYDPSRLGMILALLEHMVRDLTVNVLVMSATLPSILKEILNEKLNRPTPIIATTKAYEAFRRHRLCLKAADLLDEETILEIHQKARRGLAVMVVATTVQRAQQMWETLNAVSNGEIPVELLHGKFCSRDRFKKEQWLLQQVSTRNAGKRKNPLILVATQVVEVSLDVDFDVLFTDPAPLEALLQRFGRVNRGRRYRERDVIVLTEIPKGCPVYSKTLIEKALQQLVPLDGHMVDEAKIQLLLDAVYSGSVSDWWRDEVLKAAEAFKSEVLSNLYAFETDERLEEKFCEMFDGQEVLPMDLCDEYIRLNQEEPLHTQSLLVSVSNRQFWRLRKEHLLEKVDQHLWGVRVPYDSRFGLQLQRELLRETG
>NC_010424.1|WP_012302387.1|1365242_1366010_-|CRISPR-associated-protein-Cas5
MRVAKVHIEAPIASFRYPHFLIGRQTSFDMPPPSTIYGHIASAVGEWFNPATVKFAYQFSFQAKGSDLEHQHVITKGGQTFKWGERKYPVSTQAVVQPHLRDFLFGCRLTLYLYPPDLAEAFRNPVFCVILGRSQDLASITSVEVIELEKAKGAYLEQTLLPFAMRPLLGRGVTVLMPRYIEPPPGREPHFGRYIMLFDLVYAGEVPHTNRLLQHKDRAPEGWLVDPYSPAKHEGARRGLVFHSFVGDEDSVARF
>NC_010424.1|WP_012302388.1|1366006_1367074_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MAFLAGLLVLDAPASALNNAGADAGARTDNTIAVKKIRTPQGVLPYVSAQAFRYWLRTGLETSGGDWVAAPVFREGKIAYTDANPVRNWDDDLFGYMRAPSKKTDAVKAKETTPLEKDREITRVSPFRVGTFVAIAPSPIVSDFGTMTRQDGDPVPHEHEFYRAHLRGLFSLDLTCAGTFFDSERVGYKNLDTYRREEAQNEGCREVKVRKQMALRLPIEKRCQRVSTLVRALAELSGGAKQALHYTDLVPAIVFLAVVKNGNNPFYRALRASKTHQTEFDREAFAEILRVYKEDFLSDIHIGWAKGFLDEERQALQDAIVAAASSLTIHLQHPREAIQAMADKLADSDNEAWYE
>NC_010424.1|WP_012302389.1|1367095_1368652_-|hypothetical-protein
MLTWTGHPLVDVGIATLCVMCRKNDPRDLTMEDLDSAADRMAEYYFSGLMTSYNACVFTMNAYDNPTSGPEKRKEYENRVLRAHRSMPDSGAKHFTCPFSGKPATHLIERRQMPLLTGENVLNFYPEGHSFLPIFGPYLVALQALPLGGRRAEGRLLIAHGDDPAITLAFAERYLADNQRLLNLAKSGTLPRTKGPSLDLEREQAAGTSKHRVKYPDAKAPATLIMNDLMDIYRVRMGNEFRTRRDVSVTAYWLSNSGQGPSLEIFHLPIQVTRFLTIVDAAPYGIRWRSLVAKAWRRPYAQETPVPEGKEENKGGGRKKRDTQQLPGGPGRSRNDVIADLFAIYEHGFMDLGAARNFLRRHLRGDTPVSGVVKLREPKMTDWSLTKIFLKEVMGVDERRIEAIKQFADRLADHISQTNDKGLFRDLVYGQRPWEVRNALTKAQRNQAKDHGRLLFGLDEYLDVFEADHAVGRSDWSLSRDLISIRLVEQLYGKGFFGREDNRELLAEPEIQVDEETN
>NC_010424.1|WP_012302390.1|1368964_1369975_-|WYL-domain-containing-protein
MGKDPKKAFGNRNRSALGRIYHIDALVRVRTFPSVARLVEEFETSRRTIERDLEYLRDQLNAPLKYDRTRGGYYYARDFQLPPFTLSEGEVLALFLGSKLLSQYRGTPFEKLITDAFEKICLAMPETVSLDFSLVNQTISFAVERPRGDEQHLLHLQELLGRALRERCTVDLDYYSASRDADTSRRVDPYHLRHHQGAWYLIGHCHFRNEVRMFALDRITNLRVTDAHFTPDPAFDINAYLGDSLALERGGELEEVRIRFDSFQARYIRERQWHPSQEIEEHPDGSLTLILRVRGLGEVKRWVMSFGSRAEVLAPARLHEDVAAEVKRMGEVYAKR
>NC_010424.1|WP_012302391.1|1370178_1371174_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MNQSLNELSTSGLSNLRIARYRVELEAGADGLILPRYKGSTLRGGFGRVFRRICCAQRQDECHGCLLRESCPFAYVFETAPPAGAQALRNLENIPRPFVIEPPLETQQEYKPGEKLSFHLVLVGKGIKFLPYFIVSLDELGRVGIGKGRRPYLLRTVNFVGLDGVEKTIFCASDRTVRDPGTSLSGAEIMSQTTPNAANDRLQIRLLTMTRLKHHDRFVTALPFHVLLRGLLRRISSLMYFHQGEELDVDFTGLIERAERVRTLSEDTRWVDWDRYSGRRDARITMGGLVGKVIYTGDAAEFRPLLKIGEYVHVGKGAVFGMGKYRIESIE

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Crispr_ID: NC_010424_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010424_3

1445778-1445873

Orphan

Consensus_repeat	Method
GGTTCACATCTAACTTTATAACACGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010424_3

>merge|NC_010424|3|1445778-1445873|CRISPRCasFinder
GGTTCACATCTAACTTTATAACACGACTTTCAAATTCTACCACATCTGGCGCCTCTACCGCTGTACGGTTCACATCTAACTTTATAACACGACTTT

>NC_010424|3|3|1445778-1445873|CRISPRCasFinder
GGTTCACATCTAACTTTATAACACGACTTT	CAAATTCTACCACATCTGGCGCCTCTACCGCTGTAC
GGTTCACATCTAACTTTATAACACGACTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010424.1\|WP_012302457.1\|1435947_1436556_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NC_010424.1\|WP_012302463.1\|1447539_1449837_+\|penicillin-binding-protein-1A	unknown	unknown	gnl\|CDD\|273955
NC_010424.1\|WP_012302468.1\|1455185_1457702_-\|peptidase-U32	unknown	unknown	gnl\|CDD\|223896
NC_010424.1\|WP_012302465.1\|1451200_1451956_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213184
NC_010424.1\|WP_012302455.1\|1434329_1434896_-\|epoxyqueuosine-reductase-QueH	unknown	unknown	gnl\|CDD\|376894
NC_010424.1\|WP_049752654.1\|1434910_1435930_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NC_010424.1\|WP_012302464.1\|1449985_1451170_-\|SufD-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|223791
NC_010424.1\|WP_012302469.1\|1457728_1458691_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223404
NC_010424.1\|WP_012302454.1\|1434105_1434330_-\|DUF2905-domain-containing-protein	unknown	unknown	gnl\|CDD\|378570
NC_010424.1\|WP_012302459.1\|1437078_1437666_-\|hypothetical-protein	unknown	unknown	unknown
NC_010424.1\|WP_012302458.1\|1436552_1437041_-\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|340813
NC_010424.1\|WP_041570864.1\|1446107_1447322_-\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NC_010424.1\|WP_012302460.1\|1437821_1438547_-\|NAD(+)-synthase	unknown	unknown	gnl\|CDD\|184435
NC_010424.1\|WP_012302453.1\|1432916_1434035_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_010424.1\|WP_012302471.1\|1459151_1461554_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_010424.1\|WP_012302461.1\|1444915_1445587_-\|sporulation-protein-YunB	unknown	unknown	gnl\|CDD\|131879
NC_010424.1\|WP_012302452.1\|1432558_1432831_-\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|376903
NC_010424.1\|WP_166485237.1\|1452828_1455177_-\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NC_010424.1\|WP_012302466.1\|1451948_1452776_-\|DUF89-family-protein	unknown	unknown	gnl\|CDD\|224494
NC_010424.1\|WP_012302470.1\|1458853_1459123_-\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476

Protein	Function_ID	Function_description	E-value
NC_010424.1\|WP_012302457.1\|1435947_1436556_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	2.79656e-65
NC_010424.1\|WP_012302463.1\|1447539_1449837_+\|penicillin-binding-protein-1A	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_010424.1\|WP_012302468.1\|1455185_1457702_-\|peptidase-U32	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.45504e-111
NC_010424.1\|WP_012302465.1\|1451200_1451956_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213184	cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.	1.86774e-91
NC_010424.1\|WP_012302455.1\|1434329_1434896_-\|epoxyqueuosine-reductase-QueH	gnl\|CDD\|376894	pfam02677, DUF208, Uncharacterized BCR, COG1636.	7.70332e-84
NC_010424.1\|WP_012302464.1\|1449985_1451170_-\|SufD-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.45162e-74
NC_010424.1\|WP_012302469.1\|1457728_1458691_-\|hypothetical-protein	gnl\|CDD\|223404	COG0327, COG0327, Uncharacterized conserved protein [Function unknown].	5.68151e-05
NC_010424.1\|WP_012302454.1\|1434105_1434330_-\|DUF2905-domain-containing-protein	gnl\|CDD\|378570	pfam11146, DUF2905, Protein of unknown function (DUF2905). This is a family of bacterial proteins conserved of unknown function.	1.5234e-14
NC_010424.1\|WP_012302470.1\|1458853_1459123_-\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	3.05258e-12
NC_010424.1\|WP_012302458.1\|1436552_1437041_-\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|340813	cd16962, RuvC, Crossover junction endodeoxyribonuclease RuvC. Crossover junction endodeoxyribonuclease RuvC is also called Holliday junction resolvase RuvC. It is part of the RuvABC pathway in Escherichia coli and other Gram-negative bacteria that is involved in processing Holliday junctions, which are formed by the reciprocal exchange of strands between two DNA duplexes. Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. RuvC is thought to bind either on the open, DNA exposed face of a single RuvA tetramer, or to replace one of the two tetramers. Binding is proposed to be mediated by an unstructured loop on RuvC, which becomes structured on binding RuvA. RuvC can be bound to the complex in either orientation, therefore resolving Holliday junctions in either a horizontal or vertical manner. HJRs occur in archaea, bacteria, and in the mitochondria of certain fungi. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the Escherichia coli HJR. RuvC and its orthologs are homodimers and display structural similarity to RNase H and Hsp70.	5.40727e-81
NC_010424.1\|WP_041570864.1\|1446107_1447322_-\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NC_010424.1\|WP_012302460.1\|1437821_1438547_-\|NAD(+)-synthase	gnl\|CDD\|184435	PRK13980, PRK13980, NAD synthetase; Provisional.	2.07446e-92
NC_010424.1\|WP_049752654.1\|1434910_1435930_-\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NC_010424.1\|WP_012302471.1\|1459151_1461554_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_010424.1\|WP_012302461.1\|1444915_1445587_-\|sporulation-protein-YunB	gnl\|CDD\|131879	TIGR02832, conserved_hypothetical_protein, sporulation protein YunB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. Mutation of this sigma E-regulated gene, designated yunB, has been shown to cause a sporulation defect. [Cellular processes, Sporulation and germination].	8.78381e-55
NC_010424.1\|WP_012302452.1\|1432558_1432831_-\|preprotein-translocase-subunit-YajC	gnl\|CDD\|376903	pfam02699, YajC, Preprotein translocase subunit. See.	1.99724e-28
NC_010424.1\|WP_166485237.1\|1452828_1455177_-\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NC_010424.1\|WP_012302466.1\|1451948_1452776_-\|DUF89-family-protein	gnl\|CDD\|224494	COG1578, COG1578, Uncharacterized conserved protein [Function unknown].	1.18401e-66
NC_010424.1\|WP_012302453.1\|1432916_1434035_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0

>NC_010424.1|WP_012302461.1|1444915_1445587_-|sporulation-protein-YunB
MFRKRRNRSVRCLLLLVVLIVTVLAAERTLFPTILAIAKARAVQTAVTTVNGAVREYLSRSGIDYQDLVRLHLDNNGRIVMMQANTLKITELAAEFALASENAMVGLERQSFAIPVGQVLGSQLLATYGPGIPVRIIPVGAVKVNMVDRFEAAGINQTRHRIYLDLDTYVRIAVPWQQTEVQIATRVPLVENIIIGEVPDTFVTLDGGLLGTGLFKMAESASR
>NC_010424.1|WP_012302460.1|1437821_1438547_-|NAD(+)-synthase
MQTLVPRLTDWLKDKVADAGAQGLVFGLSGGVDSAVVAALAKRAFPDSSLGVIMPCFSRPQDAEDARLIAEHLNLPTKTVVLDRVFADLLTELCGENYSPSNERDLTVANIKPRLRMTTLYFYAARNRYLVAGTGNRSEIMIGFFTKYGDGGADLLPLANLLKVEVWEMARYLNLPERIITRAPSAGLWHDHVDEDEFGFSYKELDEYLASGKSSAEVKAAVNGWIRRNRHKREMPAVPPF
>NC_010424.1|WP_012302459.1|1437078_1437666_-|hypothetical-protein
MGQRYAVPGFLVLLAILTGAGFWVWGGTVNGSDPEPVVGEYTAFRHEIVYACGDRETGDQGFAPVEIHGLDAAGIRLHFPDADGWSVVANLPEELVVVRQSVRFCQKHAAYRHLGVCEGYVAVYEGPLGGGGEVCQLTDIPVESLPGFYRDKLDQAMAFNQQPEEVQAGLRSEMEFPDEATLHAVMENLDELRQD
>NC_010424.1|WP_012302458.1|1436552_1437041_-|crossover-junction-endodeoxyribonuclease-RuvC
MVVVMGLDPGLATTGYGVLQVTGNSYEVIAYDCLRTPAGLPDADRLEMLYRLIATLHERHRPQEVAVEQLFFHRNVTTALQVGQARGVALLAAAQAGARIIEYTPLQIKQGITGSGRADKKQVQYMVRTILGLAVTPQPDDVADALAVALCHCHHRRMEALV
>NC_010424.1|WP_012302457.1|1435947_1436556_-|Holliday-junction-branch-migration-protein-RuvA
MIDFLKGRLVSVYPEAVVVEVGGIGYRVQVPPSLAASLPEPGETVFLYTYLSVKETALEMFGFSSELDRTAFLLLLGVAGIGPRTALAVVGRLGTRRLWAAILREDTGILTTVPGIGVKSARRIMVELRDRLEKQQVAVSAELPASDGVPVLAGRAENEALAALISLGYTPREAREALNRLPDRKLDAAGLVHAALRIMGSQ
>NC_010424.1|WP_049752654.1|1434910_1435930_-|Holliday-junction-branch-migration-DNA-helicase-RuvB
MDQRIVAPGLKVEDVDEVTLRPRYLDEFIGQARVRETLALCIEAARRRGEALDHVLLYGPPGLGKTTLAHIIAREMGGNIRVTSGPAIERPGDLAAILTNLGPGDILFIDEVHRLSRTVEEILYPGMEDFALDIVIGKGPGARSLRLNLPRFTLVGATTRAGHLTSPLRDRFGVVSRLEFYSPEDLLAIVIRGAGIIRVDIEPAGAALIARRARGTPRVANRLLKRVRDYVQVRAQGVITADNAVEALEFLGIDELGLDNTDRHLLAVLIEKFGGGPVGLDTLAAATGEEAANLEDVYEPYLLQSGLITRTSRGRVATPLAYRHMGSPQPASAGQETIW
>NC_010424.1|WP_012302455.1|1434329_1434896_-|epoxyqueuosine-reductase-QueH
MAEHGDRKMLLHVCCGPCAIYPLERLREQGFEPHGYFFNPNIHPYAEYLRRREALASFARGEDWPVIFAPDYSLEQYFREVVYREGDRCRFCFTQRLRQTARVAVRGRFAAFSTTLLVSPFQKHDLVRQAGMAAAVEYGISFHYEDFRLGFRKAVSRSRELGLYRQQYCGCVFSERDRHERRSKGERR
>NC_010424.1|WP_012302454.1|1434105_1434330_-|DUF2905-domain-containing-protein
MDILEWFGRTLIIVGVLIVVLGALLYFGGKILGIGRLPGDILIQRGNFTLYFPLATAILLSIILTLVLNLFFRR
>NC_010424.1|WP_012302453.1|1432916_1434035_-|tRNA-guanosine(34)-transglycosylase-Tgt
MGILFEVLKQDSRTRARLGRLTTPHGVVETPVFMPVGTQATVKTMTPEEVRDLGARIILSNTYHLYLRPGHELVREAGGLHRFMHWNGPILTDSGGFQVFSLAPLRKLSDEGVEFRSHIDGSRHFFTPEKVVAVQEALGSDIAMVLDECAPYPCSYKDARTATERTTRWAARARAAWNSDGATALFGIIQGSVYRDLREESTRALVDLDFPGYGIGGLSVGEPKPLMYEALEWVIPLIPEDRPRYLMGVGSPDCLFEGIARGVDMFDCVLPTRMARHGAVFTHTGRLVVRNAPNARDFGPLDPGCTCYTCRHFSRAYVHHLLRAGEVLGIRLTTIHNLHFLLDLARRIREAIAEDRFHSLKEQFLAACLTPA
>NC_010424.1|WP_012302452.1|1432558_1432831_-|preprotein-translocase-subunit-YajC
MSGEMISVLYIIGLFALLYFLLIRPQQVRQKKHMEMIKSLKVNDPVITVGGIYGVIVKLKEDTVILKVAENVKIEFLKTAIAQVRRNENT
>NC_010424.1|WP_041570864.1|1446107_1447322_-|tyrosine--tRNA-ligase
MSELDRQLEIIRRGAVEIIPEDELKEKLRRSLATGRPLQVKLGLDPTAPDIHLGHTVVLHKLRHFQDLGHQVTLVLGDYTARVGDPSGKTETRKPLTGEEVMANARTYEAQVFKILDPNRTRVRFNSEWLAPLDFAAVLELASKYTVARMLERDDFAKRFHGGLPISIHEFFYPLMQGYDSVALKADVELGGTDQKFNLLMGRTLQKEYGQEPQVALTTPLLEGLDGVHKMSKSLGNYIGITEPPEEMYGKLMSLSDDLMVRYFELVTPVSLEELRALKTGLETGTVHPRDLKMRLARTVVETYHGKKAAAVAEDEFRKVFQQRELPTDIPDFPVPAGALTGGRIWLPKLLVLAGLCSSTSEARRLIGQGAVKVDEQRVVDENEITPRTGMIIRVGRRKFTRLL
>NC_010424.1|WP_012302463.1|1447539_1449837_+|penicillin-binding-protein-1A
MPRKKQRERRLNWFRLLIVLVAAGMLLGGLAAFGLVVVSLKDLPTWDPAALQPNNATLIYDVHGNLVTEIGLENRIPVDIGDIPPHVKKAFLAAEDVRFYQHYGVDPRAIARAVWANVTGSFGEQGGSTITQQLVKNCFLSFDKTLKRKIQEAFLAIQVERHYAKDEILQMYLNWVYFGEGAYGIEAAARTYFGKSVSELDLSEAATLAGLLKGPSIYSPYRDLQAATNRRNTILDLMWRYEFVGRAEAEEAKAKPIELGKPVAADNPGPSYPYPHFVDHVTDVLVDKYGEARVFKEGLRVYTTLDPKIQRAAEEALNNENNYPATKRDEHGVLQPQAAMVVLDPTNGYIKAIVGGREHTQLRQWNRATRTQPQPGSAFKPIIAYGPAIEYLGMSPASVLDDIPIKYPNWTPRNYDGGYRGLVTMRTALAYSVNIPAVKTLEAVTPSRAVDFARKLGITTLEPDRHNLAIALGGLTNGVTPLQMAGAYGAFANQGVYIEPTAITRVEDIRGRLLEEHIPVKTQAMKPTTAYLITDMLRTAVTSGTGRNARLADRPVAGKTGTTDHETSIWFCGYTPNLVGVVWMGHDNHKDRLPRGSVGGGHPAAIWRQVMGKALAGTPVRDFPQPPGIVTATVDSKSGLLPGPLTPPDHQVTDIFERGTVPTEYDDVHVLVEICPSTGLLAGQYCPDRITRVMVDVGYDVPEIVKDYNIRVPRKTCALHDRETVFNPPLDFWPPNGGQQPETPVPTMMNYARPQCFFGSNRGRH
>NC_010424.1|WP_012302464.1|1449985_1451170_-|SufD-family-Fe-S-cluster-assembly-protein
MPKTERLTPDKFKHEAREHAYADFLGAPDLAGLIDAGRLLETGVVLGDEAERAGTFLQADHSLVHAAVNQEGLEVLSTDQARQRYDWVDKEYRWKMVPPDADEYTRHAYERSRHGYFIRALAGAKATYPLQACLYIAQEGLAQAVHNIIIVEEGAELNIITGCVSSREVKHGMHIGISEFYVKKNAKLTFTMIHNWAERMHVLPRSAARIEEGGTFLQNYVCLVPVAYLQMNPALYLAGRGALVRSNTILVGTPGSFMDVGSRVFLQAPEARAEVIARTVTTGGDVINRGRLVGEVPGVKAHLECHGLLLTPRGLIHAIPELEARVEGAEMSHEAAVGKIAPEEIEYLMARGLDEDEARATIVRGFLNVKMDGLPEELQARIDEAIRQSQESIM
>NC_010424.1|WP_012302465.1|1451200_1451956_-|ABC-transporter-ATP-binding-protein
MLKVQDLTVAVDGKIILDQIDLTINPGEIHVLFGPNGSGKSTLLGTLMGFARFKVLNGRIIFKGNDITYLPVYERARLGIGLSFQRPPTIRGLTMRDMVGICSHGEADADEMAERLNFSRFLDREVNHGFSGGELKRSELLQLLAQDPEFLLLDEPESGVDVENLALVGNTINQLLDRDIPDTNHRPRKVKREQRHKAGLVITHTGHILNYVNADVGHVLYQGRLSCEGNPLELFKCIQKVGYGECVRCVV
>NC_010424.1|WP_012302466.1|1451948_1452776_-|DUF89-family-protein
MIGLIRKTAELATSDPERRAHAVREGLAILDRDFARGRVPTQIAGEAQRVVREITGNPDPFRTVKDREMAVAARLITDLQARFAGDLAGLMRLAVLGNAVDFFRELDEAELARPAKLYRDEVSAFEQRLDGARQVLYLADNAGELYFDYPLFRYLAGRTSVTYVVKDGPVQNDLTADDISRAGFAPQMPNIITTGTDTPGVDLELVSPGFRNAFDQADLILAKGMGNYETLSEMAAGHRVFFLLMAKCDPVARSLGVPRDSFVAAFGGKGGRPDA
>NC_010424.1|WP_166485237.1|1452828_1455177_-|endonuclease-MutS2
MASEKTLGRLEFDKVLERLAGQTLSPLGRERARALRPAAGLDEVRRLQAETDEGYNILRLEPNADFGGWHDVREPVRRAARGQVLDGGPLFQIGQTLAAIRTQKKFLMDRRDRYPLLAGLAGTMPVFPELEKRLVESILPGGEVADGASARLADLRRRLQAGRLQVREQLERLVRSLAQQKYLQEPIITIREGRYVVPVKIEYRNQVPGLVHDQSASGATLFIEPMAVVDKNNELRRLEAAEKQEILKILTELSTAVAQAADEILPAVDQLGHFDFVLAKARLSRQMAAVPPLLEDGAFLEFSRARHPLIRGNVVPIDGRVGRDFDLLVLTGPNTGGKTVALKTIGLLVLMAQAGLHVPASSCAVGLFDRVFADIGDEQSIENSLSTFSSHMANLVDIIGQVGAKSLVLIDELGTGTDPTEGAALAQAILNELHRRGTRGVVTTHYGELKEFATGRDRVENASVEFDLDTLEPTFRLVTGRPGRSYAFEIALRLGMPESIVSRAREFLAPEQRQTAELLRQLEESRQEAERQREEARKEAREASILKQRYEAELASLLDKKTALRERAAREAQELIRQVRREGEEIVRELRRQINAGTNREKEQAIQQARARIDELGAGLPDPAVPETVEGEPERLDGGEAVFIPRFSQQGVTLGPSRDGEVQVQVGSVKVNLPLAEVRRMIPAPHSTAPNAGTVVVQKTRDDVRTELDLRGLHAEEALSELEKYLDAAILAGLQRAYIIHGLGTGVLRAAVQNHLKGDGRIRSFRLGDRGEGGLGVTVVEF
>NC_010424.1|WP_012302468.1|1455185_1457702_-|peptidase-U32
MPGPELLAPAGSWESLAAAVQNGADAVYLGATAFSARQSAADFEPRELSRAVDYAHVRDVRVYVTVNTLVSERELGDAARLLGFLYNIGVDAVIVQDLGLMRLIADLLPGLTVHASTQTTAHNRPTLELFKELGVRRVVLARELSLDEIAGLKRDTGMEVEVFVHGALCISYSGQCLFSSLVGARSGNRGRCAQPCRLPYVLHRDGEPAVPLPPGRYLLSPRDLNLSTRLPELIRAGVDGLKIEGRMRRPEYVATVVRVYRTLLDRAAVGAFDITAEERRELLQIFNRGYTTGYLSGRPGRALMAYTRPNHRGLALGRVLRYEPDTGSAVIALEEPLQVGDTIEVWVTRGGRVSTPVREIRVDGRLVKEASGGTEVTLPVGGRVGPGDRVFKTVDARLERRARESFTSGRETKSIPLRFEVRVREGLPLELAVTGPGGLSASAQGKVPAVRAEKRPLTAAVFEKQLSRLGNTPFVLGELECRIEGEVMLPLSDINEARREAVDTLAAAKAARSRPSTPVTVDLADRVGPYLQARTASQARADSRRTLLSAAVGDLDGVRAAAGAGADVVYFPGEGLGSPTFPETEEVSEAAAVCRRHGATLVLWLPRILHDRERPRWERLLEAAGPCGVLAGNPGVFRLTGTQRRLLADFPLNIFNSLTVSLFAGLGAAGVTLSPELTLDQIREITGKALVPVEVLVHGALPVLVSEYCVVGGVLGPGDGNRCSVPCRAGRFALEDRLGLRFPVGVDHDCRMHVFNVKDLCVVDQVPELIRCGVAVLRVEGRLRDADYVGGVVGIYREVIDNSRIRGPEWQVPSHYRERLERLSPQGLTTGHYFRGVL
>NC_010424.1|WP_012302469.1|1457728_1458691_-|hypothetical-protein
MNIGEIYALAVQRGMEHDPRGLEGVEKVLAREKERFAGLKEDERDEFDQERLTNPYSDTRILYGDPETPVRRVLAGVDMEVGELLLADRLRERGRSIDLVITHHPEGKALASLHEVMHLQEDVLARLGVPINVAEGILASRISEVKRGILPLNHNRAVDVARILDIPFMCLHTTADNLVNDFLQKYLDERRPETLKDLLKTLKEVPEYKEAVRLNAGPTIVIGSPERRAGKIVVDMTGGTGGSEDAYARLATAGVGTLVVMHISEKHRKEAEANHIQVVVAGHMASDSLGLNLFLDELVRRGIEIVPCAGLLRVNRTAEQ
>NC_010424.1|WP_012302470.1|1458853_1459123_-|cell-division-protein-ZapA
MAGQTNRVEVEIFGERYVLRGDRPPDYIRFIAQDVDRRVRDICNRHSRIPVTTAAVLAAVNLADELKRLQESYDGLVKMIEGEDKEKKK
>NC_010424.1|WP_012302471.1|1459151_1461554_-|phenylalanine--tRNA-ligase-subunit-beta
MRVSINWLKEFVDIPVTSAELADRLTLAGVAVDRIDKPSAGVTGVVTGRVVEVRPHPNADRLLIAAVDIGGEILQIVTGAANFKVGDVVPVAPVGATLAGDLAIRRAKFRGVESWGMMCAADELGIGDDHEGILILPSDTPVGVAAGPILGLDDEILELDLTPNRGDCLSVLGVAREVATLLGKPLKRRKPAFPELDLQAQRMVRVDIEDPRLCSRYVARVLVDVRVGPSPLWMQTRLFTAGVRPISNIVDVTNYVMLELGQPQHAFDYDAVHNAHVIVRRARPGETLVTLDGNERSLAPDMLLITDPRTVIGVAGVMGGLDSEVTADTRRVLLESACFNPVSIRRTSRALGLRSEASIRFEKGVDPEGCLKAADRALELMQIIGAGHAAAGAVDVYPDPYTPRTLIVRPERVEEILGLAVPAKTIRDILERLEFAPRETGGRFLVRVPSHRTDVFREIDLIEEVARIHGYHRIPDTLPFGVTVPGVRTKAQVLESRLRELLVACGLTEVITYTFTNRKVFDRLRLPGTSPLRRTVPLRNPLNEDQTEMRTLLYPSLLDVLARNYQRRNTNAALFEIGRVYHPRDNAPLPEEGLRLAAALMGRTPAGWRRKDEPLDFFFLKGVLESVAREIGLETLTFTAEQDEPSFHPGRTARLRAGEANLGIIGELHPEVLEAYDLPPGVVVTEIDLDLVLAVDKKTPTFVPLPRFPSVERDLALVIRKDIPAREVMALIRKAGGELLRELRLFDVYEGRQIREGYRNLGFSLVFRAEDRTLTDEEVGRYLEAIIRTLEDTYGAQLRA

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Crispr_ID: NC_010424_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010424_4

1898301-1900891

TypeIII

Consensus_repeat	Method
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	PILER-CR
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CRISPRCasFinder
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CRT

38 spacers

csx1,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1

The CRISPR arrays of NC_010424_4

>merge|NC_010424|4|1898301-1900891|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTCGTAGGTAGGCTGGAAACCGGCCAGCGCCGCGGGCCAGAACCACTTCTGTTTCGGTTTCAATCCCTCGTAGGTAGGCTGGAAACGGTTTATGCCAGCCGCCAGCGTGTTTGCTTTCATAGGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTCTTAAACCGCTCTGCATCGCTGTTACCGTCGCTCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGAGCCGCCGCACCGGGCAGGAGTTCCCCAAAGCCAGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTCACTGTTGTCATTCGTGAAATCCTTGGAGTTCCGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTCCCTTGGCACCGATGGGCGGGCTAACCGGGTGGCCACGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTTCGCAAAGTCAAAGAGCCAGCTCCTCCCGTACTGGTTTCAATCCCTCGTAGGTAGGCTGGAAACCAGGTGGATACGTTCAGGGCCAGGCTGGAATTTGTCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCGGGTAGCCGGTCAACGTACTTGAACTTGAAGGCTCGGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTAAAGAACCTCAACGGGCAGATCATCTGCAAGAGCCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCCTGCGGCAGAGCTAACCGCTCTGCCCAAAGTCCAGTTTCAATCCCTCGTAGGTAGGCTGGAAACGACAGGAGAATTCAACAAACTAAGATTCGCCGAAATTGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCGGAGGGGCTTTTCCTTTTGTGGCCAGCCCCTCACCCGTTTCAATCCCTCGTAGGTAGGCTGGAAACAAGTCCACAGTGGGTTTGGCTATGGACTTTGGGCAGGGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTGAACCTAGCCTCGAATTTAGGCGCCCGCTGGTTCCAGTTTCAATCCCTCGTAGGTAGGCTGGAAACGTTTAAATTACGGTAATCATCGTAAACCTGCAATAGAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCAGGGCCAGGTTGGAATTTGTCCGGCACGCCGTAATCGTTTCAATCCCTCGTAGGTAGGCTGGAAACACCACGTCCTCGGCGCAGGTGGCGGTGGAAGCGGCCCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGCGTGATCCTGCTACGCTTGACCTCCTCTTCCCGGGTTTCAATCCCTCGTAGGTAGGCTGGAAACGGTCGCGCAGCCGGGCCGATCAGAAACCGGCGGATGTTAGGTTTCAATCCCTCGTAGGTAGGCTGGAAACCGGTGTTTCCGGCTGGCAAAGGAGGAGCGCGGGACCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCTCCAGTGTCCAGCCATCGTTTAGATACTGCGACACTGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGCTCAACCGCTTCTTCAAGAACGACAAAAGCAATTGTTTCAATCCCTCGTAGGTAGGCTGGAAACGTGACAGTGGATATCGTGACTACTGAGGGTGAAAGCAGTTTCAATCCCTCGTAGGTAGGCTGGAAACGGAGGGCATCACGAATAGGATTCAAACCCTCCGGGGTTTCAATCCCTCGTAGGTAGGCTGGAAACTCCAGCTGGCTCAAGGATTGCCGGCATCGGTGTTTCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTATGCCTCCGGAGTACATCCCTTCACCGTCAGAAAGGTTTCAATCCCTCGTAGGTAGGCTGGAAACCGTGGGCTTATATGTGCCCAGCGCACTTTAAGACCCAGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTTGTGGCCAGCCCCTCATCCTGGCCACAAAAGGAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACTAGCATTATCAGTATCAGTACCCGCGAGTGTGACTGGTTTCAATCCCTCGTAGGTAGGCTGGAAACTAACATGTTAATCCTCCCTCTTAATCGTCAGTTTTAGTTTCAATCCCTCGTAGGTAGGCTGGAAACTCAATTTGAGAATATCTATACTACAGGGCCTGAATTAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCCATTAGCAAGATAACGTTCGGGATTACTCAACAAGGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTGGCCAATATGGATAAAGCCGGGTTAGGCACTTGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTCGCGTGCGTCACGCGCACGGTGCCTTCCACCAAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGTTCCGGGACGCGGAGCATTTCATTTTCACCATCACGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTCGTAGCAAAACCAAGTCAAGGGGGGCTGACAGGAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCAGGAGGCGAAAAAGGTAGGCTGGAAACGGAGATAGCCCGAATCTCATAACCCCCTGGAAGTTGTTTCAATCCCTCGTAGGTAGATTCTGCTG

>NC_010424|4|2|1898301-1900600|PILER-CR
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGGCCAGCGCCGCGGGCCAGAACCACTTCTGTTTCG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTTTATGCCAGCCGCCAGCGTGTTTGCTTTCATAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTCTTAAACCGCTCTGCATCGCTGTTACCGTCGCTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGAGCCGCCGCACCGGGCAGGAGTTCCCCAAAGCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTCACTGTTGTCATTCGTGAAATCCTTGGAGTTCCGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCCCTTGGCACCGATGGGCGGGCTAACCGGGTGGCCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTTCGCAAAGTCAAAGAGCCAGCTCCTCCCGTACTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAGGTGGATACGTTCAGGGCCAGGCTGGAATTTGTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGGGTAGCCGGTCAACGTACTTGAACTTGAAGGCTCG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTAAAGAACCTCAACGGGCAGATCATCTGCAAGAGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCCTGCGGCAGAGCTAACCGCTCTGCCCAAAGTCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GACAGGAGAATTCAACAAACTAAGATTCGCCGAAATT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCGGAGGGGCTTTTCCTTTTGTGGCCAGCCCCTCACCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AAGTCCACAGTGGGTTTGGCTATGGACTTTGGGCAGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGAACCTAGCCTCGAATTTAGGCGCCCGCTGGTTCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTTTAAATTACGGTAATCATCGTAAACCTGCAATAGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAGGGCCAGGTTGGAATTTGTCCGGCACGCCGTAATC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACCACGTCCTCGGCGCAGGTGGCGGTGGAAGCGGCCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCGTGATCCTGCTACGCTTGACCTCCTCTTCCCGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTCGCGCAGCCGGGCCGATCAGAAACCGGCGGATGTTAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGGTGTTTCCGGCTGGCAAAGGAGGAGCGCGGGACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTCCAGTGTCCAGCCATCGTTTAGATACTGCGACACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCTCAACCGCTTCTTCAAGAACGACAAAAGCAATT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTGACAGTGGATATCGTGACTACTGAGGGTGAAAGCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGAGGGCATCACGAATAGGATTCAAACCCTCCGGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCCAGCTGGCTCAAGGATTGCCGGCATCGGTGTTTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTATGCCTCCGGAGTACATCCCTTCACCGTCAGAAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGTGGGCTTATATGTGCCCAGCGCACTTTAAGACCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTGTGGCCAGCCCCTCATCCTGGCCACAAAAGGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAGCATTATCAGTATCAGTACCCGCGAGTGTGACTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAACATGTTAATCCTCCCTCTTAATCGTCAGTTTTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCAATTTGAGAATATCTATACTACAGGGCCTGAATTAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCCATTAGCAAGATAACGTTCGGGATTACTCAACAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTGGCCAATATGGATAAAGCCGGGTTAGGCACTTGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC

>NC_010424|4|4|1898301-1900891|CRISPRCasFinder
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGGCCAGCGCCGCGGGCCAGAACCACTTCTGTTTCG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTTTATGCCAGCCGCCAGCGTGTTTGCTTTCATAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTCTTAAACCGCTCTGCATCGCTGTTACCGTCGCTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGAGCCGCCGCACCGGGCAGGAGTTCCCCAAAGCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTCACTGTTGTCATTCGTGAAATCCTTGGAGTTCCGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCCCTTGGCACCGATGGGCGGGCTAACCGGGTGGCCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTTCGCAAAGTCAAAGAGCCAGCTCCTCCCGTACTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAGGTGGATACGTTCAGGGCCAGGCTGGAATTTGTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGGGTAGCCGGTCAACGTACTTGAACTTGAAGGCTCG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTAAAGAACCTCAACGGGCAGATCATCTGCAAGAGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCCTGCGGCAGAGCTAACCGCTCTGCCCAAAGTCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GACAGGAGAATTCAACAAACTAAGATTCGCCGAAATT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCGGAGGGGCTTTTCCTTTTGTGGCCAGCCCCTCACCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AAGTCCACAGTGGGTTTGGCTATGGACTTTGGGCAGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGAACCTAGCCTCGAATTTAGGCGCCCGCTGGTTCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTTTAAATTACGGTAATCATCGTAAACCTGCAATAGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAGGGCCAGGTTGGAATTTGTCCGGCACGCCGTAATC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACCACGTCCTCGGCGCAGGTGGCGGTGGAAGCGGCCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCGTGATCCTGCTACGCTTGACCTCCTCTTCCCGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTCGCGCAGCCGGGCCGATCAGAAACCGGCGGATGTTAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGGTGTTTCCGGCTGGCAAAGGAGGAGCGCGGGACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTCCAGTGTCCAGCCATCGTTTAGATACTGCGACACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCTCAACCGCTTCTTCAAGAACGACAAAAGCAATT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTGACAGTGGATATCGTGACTACTGAGGGTGAAAGCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGAGGGCATCACGAATAGGATTCAAACCCTCCGGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCCAGCTGGCTCAAGGATTGCCGGCATCGGTGTTTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTATGCCTCCGGAGTACATCCCTTCACCGTCAGAAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGTGGGCTTATATGTGCCCAGCGCACTTTAAGACCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTGTGGCCAGCCCCTCATCCTGGCCACAAAAGGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAGCATTATCAGTATCAGTACCCGCGAGTGTGACTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAACATGTTAATCCTCCCTCTTAATCGTCAGTTTTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCAATTTGAGAATATCTATACTACAGGGCCTGAATTAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCCATTAGCAAGATAACGTTCGGGATTACTCAACAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTGGCCAATATGGATAAAGCCGGGTTAGGCACTTGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCGCGTGCGTCACGCGCACGGTGCCTTCCACCAAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGTTCCGGGACGCGGAGCATTTCATTTTCACCATCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTCGTAGCAAAACCAAGTCAAGGGGGGCTGACAGGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAGGAGGCGAAAAAGGTAGGCTGGAAACGGAGATAGCCCGAATCTCATAACCCCCTGGAAGTT
GTTTCAATCCCTCGTAGGTAGATTCTGCTG

>NC_010424|4|2|1898301-1900891|CRT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGGCCAGCGCCGCGGGCCAGAACCACTTCTGTTTCG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTTTATGCCAGCCGCCAGCGTGTTTGCTTTCATAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTCTTAAACCGCTCTGCATCGCTGTTACCGTCGCTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGAGCCGCCGCACCGGGCAGGAGTTCCCCAAAGCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTCACTGTTGTCATTCGTGAAATCCTTGGAGTTCCGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCCCTTGGCACCGATGGGCGGGCTAACCGGGTGGCCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTTCGCAAAGTCAAAGAGCCAGCTCCTCCCGTACTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAGGTGGATACGTTCAGGGCCAGGCTGGAATTTGTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGGGTAGCCGGTCAACGTACTTGAACTTGAAGGCTCG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTAAAGAACCTCAACGGGCAGATCATCTGCAAGAGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCCTGCGGCAGAGCTAACCGCTCTGCCCAAAGTCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GACAGGAGAATTCAACAAACTAAGATTCGCCGAAATT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCGGAGGGGCTTTTCCTTTTGTGGCCAGCCCCTCACCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AAGTCCACAGTGGGTTTGGCTATGGACTTTGGGCAGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGAACCTAGCCTCGAATTTAGGCGCCCGCTGGTTCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTTTAAATTACGGTAATCATCGTAAACCTGCAATAGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAGGGCCAGGTTGGAATTTGTCCGGCACGCCGTAATC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACCACGTCCTCGGCGCAGGTGGCGGTGGAAGCGGCCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCGTGATCCTGCTACGCTTGACCTCCTCTTCCCGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTCGCGCAGCCGGGCCGATCAGAAACCGGCGGATGTTAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGGTGTTTCCGGCTGGCAAAGGAGGAGCGCGGGACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTCCAGTGTCCAGCCATCGTTTAGATACTGCGACACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCTCAACCGCTTCTTCAAGAACGACAAAAGCAATT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTGACAGTGGATATCGTGACTACTGAGGGTGAAAGCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGAGGGCATCACGAATAGGATTCAAACCCTCCGGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCCAGCTGGCTCAAGGATTGCCGGCATCGGTGTTTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTATGCCTCCGGAGTACATCCCTTCACCGTCAGAAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGTGGGCTTATATGTGCCCAGCGCACTTTAAGACCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTGTGGCCAGCCCCTCATCCTGGCCACAAAAGGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAGCATTATCAGTATCAGTACCCGCGAGTGTGACTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAACATGTTAATCCTCCCTCTTAATCGTCAGTTTTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCAATTTGAGAATATCTATACTACAGGGCCTGAATTAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCCATTAGCAAGATAACGTTCGGGATTACTCAACAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTGGCCAATATGGATAAAGCCGGGTTAGGCACTTGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCGCGTGCGTCACGCGCACGGTGCCTTCCACCAAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGTTCCGGGACGCGGAGCATTTCATTTTCACCATCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTCGTAGCAAAACCAAGTCAAGGGGGGCTGACAGGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAGGAGGCGAAAAAGGTAGGCTGGAAACGGAGATAGCCCGAATCTCATAACCCCCTGGAAGTT
GTTTCAATCCCTCGTAGGTAGATTCTGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010424.1\|WP_012302874.1\|1889681_1890326_-\|hypothetical-protein	csx19	mkCas0137_csx19_CAS-III-D	unknown
NC_010424.1\|WP_012301814.1\|1904573_1905968_+\|ISNCY-like-element-ISCde2-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010424.1\|WP_012302887.1\|1918803_1919778_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_010424.1\|WP_012302884.1\|1915322_1915859_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_010424.1\|WP_166485172.1\|1898049_1898211_-\|hypothetical-protein	unknown	unknown	unknown
NC_010424.1\|WP_012301814.1\|1912285_1913680_+\|ISNCY-like-element-ISCde2-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010424.1\|WP_041571315.1\|1919755_1921243_-\|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	unknown
NC_010424.1\|WP_012302873.1\|1888657_1889677_-\|CRISPR-associated-RAMP-family-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_010424.1\|WP_012302877.1\|1892059_1892485_-\|hypothetical-protein	csm2gr11	mkCas0136_csm2gr11_CAS-III-A	unknown
NC_010424.1\|WP_012302875.1\|1890322_1891222_-\|hypothetical-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_010424.1\|WP_012302883.1\|1914302_1915298_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_010424.1\|WP_166485171.1\|1894460_1896707_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
NC_010424.1\|WP_012302882.1\|1914036_1914300_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_010424.1\|WP_012302879.1\|1893724_1894447_-\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274211
NC_010424.1\|WP_012302878.1\|1892481_1893753_-\|CRISPR-associated-RAMP-Csx10-family-protein	csx10gr5	cd09700_csx10gr5_CAS-III-D	gnl\|CDD\|187831
NC_010424.1\|WP_012301814.1\|1900968_1902363_-\|ISNCY-like-element-ISCde2-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010424.1\|WP_041570922.1\|1918057_1918807_-\|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl\|CDD\|273860
NC_010424.1\|WP_012302876.1\|1891214_1892063_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274211
NC_010424.1\|WP_041570921.1\|1896736_1897984_-\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
NC_010424.1\|WP_012302885.1\|1915913_1918103_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010424.1\|WP_012302874.1\|1889681_1890326_-\|hypothetical-protein	csx19	mkCas0137_csx19_CAS-III-D	4.2e-130	426.2	3.3
NC_010424.1\|WP_012302887.1\|1918803_1919778_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	7.5e-78	256.5	0.0
NC_010424.1\|WP_012302884.1\|1915322_1915859_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	2.7e-47	155.7	0.1
NC_010424.1\|WP_012302877.1\|1892059_1892485_-\|hypothetical-protein	csm2gr11	mkCas0136_csm2gr11_CAS-III-A	1e-83	273.3	5.0
NC_010424.1\|WP_012302883.1\|1914302_1915298_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	6.5e-131	431.0	0.1
NC_010424.1\|WP_041571315.1\|1919755_1921243_-\|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	2e-212	700.9	0.0
NC_010424.1\|WP_012302873.1\|1888657_1889677_-\|CRISPR-associated-RAMP-family-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	1.1e-31	105.2	0.0
NC_010424.1\|WP_012302875.1\|1890322_1891222_-\|hypothetical-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	1.8e-30	100.9	0.0
NC_010424.1\|WP_166485171.1\|1894460_1896707_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	2e-48	160.1	0.0
NC_010424.1\|WP_012302882.1\|1914036_1914300_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.7e-26	87.0	0.4
NC_010424.1\|WP_012302879.1\|1893724_1894447_-\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	6.8e-22	73.4	0.0
NC_010424.1\|WP_012302878.1\|1892481_1893753_-\|CRISPR-associated-RAMP-Csx10-family-protein	csx10gr5	cd09700_csx10gr5_CAS-III-D	1.8e-41	137.5	0.0
NC_010424.1\|WP_041570922.1\|1918057_1918807_-\|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	2.1e-21	71.3	0.2
NC_010424.1\|WP_012302876.1\|1891214_1892063_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	9.4e-50	163.7	0.0
NC_010424.1\|WP_041570921.1\|1896736_1897984_-\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	1.3e-34	114.2	0.0
NC_010424.1\|WP_012302885.1\|1915913_1918103_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	9.9e-70	230.3	0.0

Protein	Function_ID	Function_description	E-value
NC_010424.1\|WP_012302887.1\|1918803_1919778_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	8.63666e-85
NC_010424.1\|WP_012302884.1\|1915322_1915859_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.01639e-64
NC_010424.1\|WP_012301814.1\|1904573_1905968_+\|ISNCY-like-element-ISCde2-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.10735e-16
NC_010424.1\|WP_012302883.1\|1914302_1915298_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	8.57039e-162
NC_010424.1\|WP_012302873.1\|1888657_1889677_-\|CRISPR-associated-RAMP-family-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.39889e-16
NC_010424.1\|WP_012302875.1\|1890322_1891222_-\|hypothetical-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.18173e-26
NC_010424.1\|WP_041570921.1\|1896736_1897984_-\|DUF1887-family-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	1.0207e-22
NC_010424.1\|WP_012302882.1\|1914036_1914300_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	9.02092e-27
NC_010424.1\|WP_012302879.1\|1893724_1894447_-\|hypothetical-protein	gnl\|CDD\|274211	TIGR02581, putative_CRISPR-associated_protein, CRISPR-associated RAMP protein, SSO1426 family. Members of this CRISPR-associated (cas) gene family are found in the RAMP-2 subtype of CRISPR/cas locus and designated TM1809 family.	2.33365e-20
NC_010424.1\|WP_012302878.1\|1892481_1893753_-\|CRISPR-associated-RAMP-Csx10-family-protein	gnl\|CDD\|187831	cd09700, Csx10, CRISPR/Cas system-associated RAMP superfamily protein Csx10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Duplicated RAMP domains.	3.7617e-36
NC_010424.1\|WP_012301814.1\|1900968_1902363_-\|ISNCY-like-element-ISCde2-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.10735e-16
NC_010424.1\|WP_041570922.1\|1918057_1918807_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	2.50375e-17
NC_010424.1\|WP_012302876.1\|1891214_1892063_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|274211	TIGR02581, putative_CRISPR-associated_protein, CRISPR-associated RAMP protein, SSO1426 family. Members of this CRISPR-associated (cas) gene family are found in the RAMP-2 subtype of CRISPR/cas locus and designated TM1809 family.	6.24835e-50
NC_010424.1\|WP_012301814.1\|1912285_1913680_+\|ISNCY-like-element-ISCde2-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.10735e-16
NC_010424.1\|WP_012302885.1\|1915913_1918103_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	1.82402e-65

>NC_010424.1|WP_166485172.1|1898049_1898211_-|hypothetical-protein
MAVWFSQAVVVLWGRPMVHLTYPPLLGWGVSGVVLTFWVLRNMTLSVFEVLHL
>NC_010424.1|WP_041570921.1|1896736_1897984_-|DUF1887-family-protein
MAVAKAEAKSKVMVVLVSEQRMQNLIPCFQKDSTITNVHLVRSSDADNPDSRLGKAWSDTKAVLEERKLEVVDADVAVDAYDPASTEKVVKRLLDKLAHHKRTAVVNFTGGTKCMAVGAYLAARQAGVATLYVDTARRQLLLRAHDDQPCAVPFELDGLSIDTYFRAYGLNPRVNDGQILERYAKIMTVIRRYWPGSAATLDMWGKHFDQKSSSRRKRRLSGAVKVSWRPSDEVECELWAVLEEARLFCQEGEEFFASAEARQFLTGRWLECLTYQLLRESNCFDEVAFDLHLTEKNTALAAGPGEASPASTTAPTGGAANQLDVVTIEQGNLAVFECKSGNLRGQDTLNKLQALWTRLGTFARLFLVTSCPLDEISGDFRYRARAYRLARIITREDLEDAGKLKDAVLKAVGGS
>NC_010424.1|WP_166485171.1|1894460_1896707_-|hypothetical-protein
MFEWRDGFTGRRYGFTKEQQDAARRLVAGLLEAKLKKEVGDDLRALADAAAAFWARDYYRLVFPLAFGREVVDGGVRAVFLDDPGDRVDQTAVFRRAPLDGAARPPLLPAGGRAPAEYLLADVVLVRAALANIYCRQRGVDPGLLHVLRLACFTGPLAAELAASGFDLPEEVRRLVDFLEGDGEPPAELDAEDLRRLWEAGAVAAEEAMDIAPASFAVTVVVGAVQRVKQYVFETPGLNEIRGGSEILSDVTERLAVDVATELGAEVVLRAAGSHLEFLVPDAETGAAWEARLRREFVAATGGVLVAAAAETLPVRDLLGDYYRAMGRVYQRLEAARNQTRPLYPETLPFEERCAICGQRAAEGWYQPPEGDAEPICRVCLIKREWGRDARRDKTRELEEQLRGGGRALWGLGADAGLPQSLDDLIVGHPRRRLVAVVYGDGNNFGAVVQQLKNIAVARQWTCRVEAVTWSATALALAEAVRVSVPAPHAAAKEAQRKPSLPFQVLALGGEDIGLFAWGPVGLRFAERFVALTDREFTPAPGHDGARICFSLGVLVADAKAAVARTVAFSEGELLKWAKRAARNAGYRDGGTIAFLVVPTADQIPGDLDDFQQTMYYREGATFPVCLTLRPVTAAELGFLLDRAARLREAGFVGALGRMAAAFVRGEPRVAVLYYLYQKARERKGRDDGGFTALLEDTRERPPTLADLDFAGRVLGTRRPFGGEPVAGGRETYFAPLVDLAELVKVLE
>NC_010424.1|WP_012302879.1|1893724_1894447_-|hypothetical-protein
MNEVWRLTVEVRPLGMLHVAGPGRPRPLVDRTVAVDARGRPYLPASSVRGRVRAHLERLLRAYGLPVCTPPRPQHMCPHAGLAGTSDGYCLACRLFGSPWRAGAVTVNDFYPVGVFEATEAEWERNMVVRTGIGISRKLGTVREERLFFTEAVPGDDALRFRGTLEARAERAVVGWLVGTLGLVTHLGGQKGRGLGRVELDVSGVAVWTPGRGWEEMTEHEVESFCREVVSLALAGTVAG
>NC_010424.1|WP_012302878.1|1892481_1893753_-|CRISPR-associated-RAMP-Csx10-family-protein
MRWQVRLRVEGPLLVGKGTPTQNVLLGRDYIPGSVWRGALAEAVLRAAGALAPGAAGQAAELPPEFGLAFGPETRFGFLYPVPGEKWDGFPLPLTVRSCKARPGFACGVHGRGKGGGHGVLDMLLVTLRRHLGLAEELSPGCPECRERLDRFRGVAARMPLSAGQDTAYETVKVRRQLLVRVGLDRRTETAADGVLYALDAQVPGRDRALYFTGTWRGTPEALHALHQLLDGACPRAGDGWAIRVGTARARGLGRAVLEITEAQAVFLPPLEERLEAFQPRQGDGQPADPDHLCFALLLKAPLLVRDAAGVACGLPAAAVLAPYVTSLPVGLEFLETVSVLEWESSDGWAMAWGLPKPVQAALAPGSVLAYRAPARERRAVLAFLEEVENGGLGERTAEGWGEVVACDPLHLKCDAGKEAVKQ
>NC_010424.1|WP_012302877.1|1892059_1892485_-|hypothetical-protein
MKSVQQAVDALNEQLVARAEKIVQALGPRDENQQDVSKSQLARAIDVARAAQSAAVFQNWLAYQAGRKETGAFWTTQVGGRPLIRWVEGTLGWIEKEIDAQQLGDAAVRRQAVTEALVRFLGFLRRAFVGAKFVLERGKER
>NC_010424.1|WP_012302876.1|1891214_1892063_-|CRISPR-associated-RAMP-protein
MRAFAAAGFWDTFRHRLVVTGELVCDTALRVGAGTEALLPSASDLPVVTTGGRPYIPGSSLRGVVRSQVERLVRTLEREPRNGRGACDPLEDTGWCIPRKEMQDLRRKVRERDEGRDDWLAQQVWERSCRVCRIFGSPWLASRVRFSDLFPLGETHPEVRDGVAIDREREAVKNKYDFEVVPAGTRFALEIMAENLGTPAERSLLWLGLQELAEGGVPVGGFKGRGLGRVHLEHLRVRYVDATDREALQAYLVRRDWREAGTEERQEWLNAFFAECGGEAGA
>NC_010424.1|WP_012302875.1|1890322_1891222_-|hypothetical-protein
MHSRFYNEAVFTLTVSPRTPLLIKAGGEGAAAMDPTVPDMNFVRTRRPDGREVLFIPGASFRGVLRAHAERLLRSVRPQAACDPLAHRKKRETYDLEKACTFDDKSSGPEAYRGACHACRLFGATGLASRVRVSDFYPEGALATDTRYGVAIDRVTGAVAHGPFELEIVTEGSFAGELTLRNFTLGQFGLLGAALLDVADGLVPLGFGKSRGLGRVAVEITRLAVRTLRDPESHILGVGALCDEAARRAFAVPGADRERLLVAGAHTSRARGLFVLEAAGETARRWLEAAAPRWVGELA
>NC_010424.1|WP_012302874.1|1889681_1890326_-|hypothetical-protein
MTGYVLTFRENLDNGSDAVEMVRGVFAATGARLDEGFWAPGATWWYAWNELEIQLPTVCATAADLDAGRLFNPRWVVVRVFAPPAELRWERQGRGRVVCLLLEDNARRRLPPTLVAGAVHKETYLATPGRRLWSGRRLDLPGGSRRGRVEFPRPLDYGVEDHDYSKPLAARVYLYQDEDGLVQLVRYAEPELLSERVAVRPLGHRDRTLTAEGG
>NC_010424.1|WP_012302873.1|1888657_1889677_-|CRISPR-associated-RAMP-family-protein
MPFDGPPEKPYAFAPLPESLARDKASGHHSYREDLMTGALECALALLRPVQVASGIVSFVRGERSGEQLAALHASVTRGGRRVYVIPGSSLKGAVRSVAEAVSRSCFSVADKSVDRLLPGSLKRCRQVQALCPACRLFGMTAGRRENYLGSVHMADVPLPSGGRVALVYTPLLWTPAPGRRGLPPRYLQNSRVRGRKFYFHGKTATGPDARIALAAGQTLHTTIYFESLSPALLGVLFTALGQHPRFPFLLKLGAAKPVGLGSVQVQVTAAELRSTPAQRGRLGGAASRREGEALETWIAECCQKAEDENLLNLAGLEQVATILGREGLDSRQLPSDPY
>NC_010424.1|WP_012301814.1|1900968_1902363_-|ISNCY-like-element-ISCde2-family-transposase
MLCLRQEESRQVSFLDYILPPEVLELPEDLAKLDAWLDDERFFEPFQDKYHRCLGRPSVPAETYLRMTALKHQYRLSDRQVCALVKDRISWRRFCRIPWNKPVPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPTDSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIKKRVLAIAKVLKRRTGESIQEVRRITGEMADIAEKTLQDARNVVQHLHQQARHLAGTARDEKRRLAARLEKILDLGEQIVSQARQVNAGQLNLPERVVSLSDPEARPIRRGKAHKETEFGYKVRLTESTERLVTEYDVMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGKRSHSRTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYNLNRIAKLI
>NC_010424.1|WP_012301814.1|1904573_1905968_+|ISNCY-like-element-ISCde2-family-transposase
MLCLRQEESRQVSFLDYILPPEVLELPEDLAKLDAWLDDERFFEPFQDKYHRCLGRPSVPAETYLRMTALKHQYRLSDRQVCALVKDRISWRRFCRIPWNKPVPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPTDSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIKKRVLAIAKVLKRRTGESIQEVRRITGEMADIAEKTLQDARNVVQHLHQQARHLAGTARDEKRRLAARLEKILDLGEQIVSQARQVNAGQLNLPERVVSLSDPEARPIRRGKAHKETEFGYKVRLTESTERLVTEYDVMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGKRSHSRTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYNLNRIAKLI
>NC_010424.1|WP_012301814.1|1912285_1913680_+|ISNCY-like-element-ISCde2-family-transposase
MLCLRQEESRQVSFLDYILPPEVLELPEDLAKLDAWLDDERFFEPFQDKYHRCLGRPSVPAETYLRMTALKHQYRLSDRQVCALVKDRISWRRFCRIPWNKPVPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPTDSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIKKRVLAIAKVLKRRTGESIQEVRRITGEMADIAEKTLQDARNVVQHLHQQARHLAGTARDEKRRLAARLEKILDLGEQIVSQARQVNAGQLNLPERVVSLSDPEARPIRRGKAHKETEFGYKVRLTESTERLVTEYDVMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGKRSHSRTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYNLNRIAKLI
>NC_010424.1|WP_012302882.1|1914036_1914300_-|CRISPR-associated-endonuclease-Cas2
MYVILVYDVNVARVGKVLKRARRYLTWVQNSVLEGELTEASYRALKSDLARVIDTREDSVLFYVLGARKYTRRELMGVQKGGEEWIY
>NC_010424.1|WP_012302883.1|1914302_1915298_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MQKTLYLFASGRLRRKDNTVCLESENATKYFPVASLRDIFVFGELDLNKKLFEFMEEQEIVLHFFGYYGNYVGSFYPREHYNSGYVILRQAEHYLDGARRLELARRFVEGALANILQILRYYQNRGKELAGSIESISRLLEGSLPACGRVEELMAVEGNAREYYYESFNVILDKSPFTMPGRSKRPPTDPLNALISFGNSLIYAKILTEIYKTHLDPRIGYLHSTNFRRFTLNLDLAEIFKPVLADRVLFHLLGKKMLDLKDFEQQGGAYLLRERGRRLYVETLEEKLQSTFHHRRLRRNVSYQTLLRLELYKIQKHLMGEQPYKPFVSRW
>NC_010424.1|WP_012302884.1|1915322_1915859_-|CRISPR-associated-protein-Cas4
MGIDAKFQEAAPFHLQPVVGSMVNAYIICPRKAWLMSRQICPDEDNTYLHLGRLIQNQSYGRERKEVRLEHLCLDLIRREEETLVVAEVKKSSRAREAARMQLAFYLYELEQMGVEAEGELLFPEERRRERMVLDPELARQVENLKARVRALILAPSAPLPTRIRFCARCAYAEFCWA
>NC_010424.1|WP_012302885.1|1915913_1918103_-|CRISPR-associated-helicase/endonuclease-Cas3
MDELVLLGKPDVPLLAHLKEVTEQGKILARHLGLPPALEKRALLACAFHDVGKATRSFQDYMRGKRGKGYPHALASLPFALAAELYTLQASPLAAAAVLSHHSPLGPEVYRGYRAPDYVDEKNLAAFLEDVVAFLQGLGWEGNLPAVEKLLKLATSDGTPATLLDNSRFRFGEELISLRGLFKELPPIDFADIKAVLQLADWVASSGKAQAGDLFLHQGRKLVLTSIKEKSIQLRPFQKKAGEMKRERLWLRAPTGTGKTEALLLWAGDTERLLYLLPTQATANAMWKRLKKIYGEENVGLAHGRAGYILRKELEEDPLDVRLWASVFARPVVVGTLDQYLMAHLQGRHWEIRRSLARRATVVLDEIHSYDPYTLGLLQEALAQEPPARLALASATLPEFLPELLGQGPLLEAEEPLWQRKRHELRLFVEPVASALEEALSFVRQGKTVLVIANTVKQAQEIYQALQEDGDYQVHLLHSRFAFRDRWKKEEQLGKTIPGTILVATQIVEVSLDISYDVLFTEVAPIDALVQRLGRVNRRGITPEGTTAPPAPAFIFLEWDKGSEKIYGQEILTWSRDILNDMPQHPTDGEWVQATNRLYEVQASSPSYQEDLREGQQTLREVQRISGCYTIDLSDEEMQKKFTTRKGQLSVEVLPQALKDEAFALRERGEHWRLVELLVPVPVYWLPAFSHWFSPLSDLGVFLTDLPYSEEMGLMPPGEGEAPPGMEIY
>NC_010424.1|WP_041570922.1|1918057_1918807_-|CRISPR-associated-protein-Cas5
MNVLWVKVTAPLASFRRPLDHNYQRTLPLPPPTTLFGLAGAARGLAEEELWQEASPLRDLLVATLALQKPGLARDMWTVMKIKNNKLAERSPYFREILFNARFMILYGGPEELLAELQQAFLDPTYPLSLGREDELIVVEELGRGETCPGAPLFSGTVIPGDLQGLRFKWVPRPGIAFEPPAVETMPLAFEVDKRGIRYPLNPRPFTFLPYDLEVELEGYQDALTIEPLEGRSFTWMNWSSWESRTSLF
>NC_010424.1|WP_012302887.1|1918803_1919778_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MNNLQQSKAIALGYLMKVSAGNINASHTEGNVMVAKKVTLPDGSSVPYFSGQAKRRMLRDRLEDLGFTLSEASALVSGQEVTPPVRPWEFVDEDLFGYLDPSGNRRRTSPVRVSAAVGLFSFQGDRDLGTRSFERFGQDMAAGGNMFETELYANMFKGNMLVELDRAGIFSDQEVGKNNKEIPEALEKIERNGRLFYVLPGEERQRRLQALLDALGLLWGGGRTARMLSDLSPRFFVYARLRVKHPVFLEALQARYLEGRYGLVPDPLRTALDKFKDFRQAVIFGLEAGFLGNEEEIRAELQNYGPVLSVHEAIAQAKEDIKKL
>NC_010424.1|WP_041571315.1|1919755_1921243_-|hypothetical-protein
MIQVQLDLRHSTGNFWIDNGLVYLVNELGQGTYPVDNILALVQERLLQKTGNVGQYFDEVTGELKNYDKVTWVYPTGFFIKVVDAPPKKKVNGKEYPLSPPHPRLEFLFSKTKKQCNICGAQASATDAKMWMFPFIVAPDKFGSFYSRGKRGINLCPRCAVAGTAGYLTWLWVAQGRTALHFFLFHSDLAEISRLQKEVIQPLALSGSRGGNIVLPFYGPYLHETTMALLLKLFAHVQSSDQIPEEGRMLLASLLGADETLPPAPLTLYAITGNPGQAFNMQLFREFSRLHALYRLYQDWLEVVPAENPQQTLINVFRQFQVREGNQYNTLWREKISWAVLEFDDPLPSVEAFLFEARAKEKNLPPLFQGTEAVLSYYAKEVLHVDENLLKVLKGFGYTLGTEAQKSNEMGLLYALRNAKNLEEFLRVLNDIQFRLEITVPERLVEIGQGERIAGSPWLRVKTLLSIYAMNSYLRAARGSRTEEGGNVYEQPATE

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Crispr_ID: NC_010424_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010424_5

1902525-1904408

TypeIII

Consensus_repeat	Method
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CRISPRCasFinder
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CRT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	PILER-CR

28 spacers

csx1,cas10,csm3gr7,csx10gr5,csm2gr11,csx19,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6

The CRISPR arrays of NC_010424_5

>merge|NC_010424|5|1902525-1904408|CRISPRCasFinder,CRT,PILER-CR
TTTTCAGCAGAATCTAGGTAGGCTGGAAACTCGGGAAGAGCAGCCGTCCTCCCGATCGGTAAGGGAGTTTCAATCCCTCGTAGGTAGGCTGGAAACGCCTTTGAACTCCTAGCCGCCCGGCTCGGATCCCACGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTTCCTAACCCCCAACTTCCCCTCCGGTCTAAAAACGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTCAACAGATCGTGAGCAACACGCTCTACAAAGTCACTGTTTCAATCCCTCGTAGGTAGGCTGGAAACATCGGTGCTTGATGTTACCAAAGATATATGCCTCCTGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGTTACATCAGTATCCACTGCAATGCGCACACGAATGTTTCAATCCCTCGTAGGTAGGCTGGAAACGCTTTTACAGTCCGATGGAGATGTCCGCAATCTCCCGTTTCAATCCCTCGTAGGTAGGCTGGAAACAATTTCGGCACTCCGGGCCAGTGCTTGTCTAGCACTGTTTCAATCCCTCGTAGGTAGGCTGGAAACTAACTCCTTCGGCGGTCGCCGGGGGACACCACCAATGGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCTGACTGTGAATATAGAGAGCGGCAACCTATGTGGGAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCAAACCTTGGGCATATCGGGGCCTCCTTTCATTCGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACGAGGGCAAACCATGTCATCACTTAGCTACAAAGAATGTTTCAATCCCTCGTAGGTAGGCTGGAAACACACTCTACCCTGGATGTACTGGGCCTTCTTCCGCCGTTTCAATCCCTCGTAGGTAGGCTGGAAACGCAGCACCCAAAAGGGCAAAGGGGCAAAAGGTGAACGTTTCAATCCCTCGTAGGTAGGCTGGAAACTCAGAGCCATCGCTTCGCGCGAAGGCCTCTGCAAAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCACATACTAAAGGTGGTTGTCAAGTGTACTACTACTGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGCTTTGTCACAGCGGTTGGAAGCGATTCCGGGGAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACACAATTGTGCTAAATAAACGGCGTGGTACGCCTGTGGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTCAACAATGCACTTATCCGTGCCTGCAACCTAGACCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTGCGTCTTCCGGCCCTCGATAATCGCTCTCACCATGTTTCAATCCCTCGTAGGTAGGCTGGAAACTATCTACTCCATTTACCTCACCCCTTCCGCCGCTCCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCACATTCGCGCCGTGTTTCAACCACGTCCTCGCTGGGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCACCTGGACTCTCGGCGGCACCACCCGCTCCCGTCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTAAATCTCCCGATCTGTACCCTTCCCCTGTAAACTCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTGCCGAAACCGTGGGTCTAAGGCTCGCAAACACCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTGCATTCGCTGCAAGCAAGCGGTGTACTATACCTAGTTTCAATCCCTCGTAGGTAGGCTGGAAACACAGCCGAGGTTGGAGCTTATTACTGTAGTAACACCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTTCTTATTCGTCGGTAATAGGTCGTTTTAGGAACGGTTTCAATCCCTCGTAGGTAGATTCTGCTG

>NC_010424|5|5|1902525-1904408|CRISPRCasFinder
TTTTCAGCAGAATCTAGGTAGGCTGGAAAC	TCGGGAAGAGCAGCCGTCCTCCCGATCGGTAAGGGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCCTTTGAACTCCTAGCCGCCCGGCTCGGATCCCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTCCTAACCCCCAACTTCCCCTCCGGTCTAAAAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTCAACAGATCGTGAGCAACACGCTCTACAAAGTCACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ATCGGTGCTTGATGTTACCAAAGATATATGCCTCCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGTTACATCAGTATCCACTGCAATGCGCACACGAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCTTTTACAGTCCGATGGAGATGTCCGCAATCTCCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AATTTCGGCACTCCGGGCCAGTGCTTGTCTAGCACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAACTCCTTCGGCGGTCGCCGGGGGACACCACCAATG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTGACTGTGAATATAGAGAGCGGCAACCTATGTGGGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAAACCTTGGGCATATCGGGGCCTCCTTTCATTCGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAGGGCAAACCATGTCATCACTTAGCTACAAAGAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACACTCTACCCTGGATGTACTGGGCCTTCTTCCGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCAGCACCCAAAAGGGCAAAGGGGCAAAAGGTGAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCAGAGCCATCGCTTCGCGCGAAGGCCTCTGCAAAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCACATACTAAAGGTGGTTGTCAAGTGTACTACTACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCTTTGTCACAGCGGTTGGAAGCGATTCCGGGGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACAATTGTGCTAAATAAACGGCGTGGTACGCCTGTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTCAACAATGCACTTATCCGTGCCTGCAACCTAGACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTGCGTCTTCCGGCCCTCGATAATCGCTCTCACCAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TATCTACTCCATTTACCTCACCCCTTCCGCCGCTCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CACATTCGCGCCGTGTTTCAACCACGTCCTCGCTGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCACCTGGACTCTCGGCGGCACCACCCGCTCCCGTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAAATCTCCCGATCTGTACCCTTCCCCTGTAAACTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTGCCGAAACCGTGGGTCTAAGGCTCGCAAACACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGCATTCGCTGCAAGCAAGCGGTGTACTATACCTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACAGCCGAGGTTGGAGCTTATTACTGTAGTAACACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTTCTTATTCGTCGGTAATAGGTCGTTTTAGGAACG
GTTTCAATCCCTCGTAGGTAGATTCTGCTG

>NC_010424|5|3|1902525-1904408|CRT
TTTTCAGCAGAATCTAGGTAGGCTGGAAAC	TCGGGAAGAGCAGCCGTCCTCCCGATCGGTAAGGGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCCTTTGAACTCCTAGCCGCCCGGCTCGGATCCCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTCCTAACCCCCAACTTCCCCTCCGGTCTAAAAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTCAACAGATCGTGAGCAACACGCTCTACAAAGTCACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ATCGGTGCTTGATGTTACCAAAGATATATGCCTCCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGTTACATCAGTATCCACTGCAATGCGCACACGAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCTTTTACAGTCCGATGGAGATGTCCGCAATCTCCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AATTTCGGCACTCCGGGCCAGTGCTTGTCTAGCACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAACTCCTTCGGCGGTCGCCGGGGGACACCACCAATG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTGACTGTGAATATAGAGAGCGGCAACCTATGTGGGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAAACCTTGGGCATATCGGGGCCTCCTTTCATTCGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAGGGCAAACCATGTCATCACTTAGCTACAAAGAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACACTCTACCCTGGATGTACTGGGCCTTCTTCCGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCAGCACCCAAAAGGGCAAAGGGGCAAAAGGTGAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCAGAGCCATCGCTTCGCGCGAAGGCCTCTGCAAAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCACATACTAAAGGTGGTTGTCAAGTGTACTACTACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCTTTGTCACAGCGGTTGGAAGCGATTCCGGGGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACAATTGTGCTAAATAAACGGCGTGGTACGCCTGTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTCAACAATGCACTTATCCGTGCCTGCAACCTAGACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTGCGTCTTCCGGCCCTCGATAATCGCTCTCACCAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TATCTACTCCATTTACCTCACCCCTTCCGCCGCTCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CACATTCGCGCCGTGTTTCAACCACGTCCTCGCTGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCACCTGGACTCTCGGCGGCACCACCCGCTCCCGTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAAATCTCCCGATCTGTACCCTTCCCCTGTAAACTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTGCCGAAACCGTGGGTCTAAGGCTCGCAAACACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGCATTCGCTGCAAGCAAGCGGTGTACTATACCTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACAGCCGAGGTTGGAGCTTATTACTGTAGTAACACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTTCTTATTCGTCGGTAATAGGTCGTTTTAGGAACG
GTTTCAATCCCTCGTAGGTAGATTCTGCTG

>NC_010424|5|3|1902591-1904276|PILER-CR
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCCTTTGAACTCCTAGCCGCCCGGCTCGGATCCCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTCCTAACCCCCAACTTCCCCTCCGGTCTAAAAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTCAACAGATCGTGAGCAACACGCTCTACAAAGTCACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ATCGGTGCTTGATGTTACCAAAGATATATGCCTCCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGTTACATCAGTATCCACTGCAATGCGCACACGAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCTTTTACAGTCCGATGGAGATGTCCGCAATCTCCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AATTTCGGCACTCCGGGCCAGTGCTTGTCTAGCACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAACTCCTTCGGCGGTCGCCGGGGGACACCACCAATG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTGACTGTGAATATAGAGAGCGGCAACCTATGTGGGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAAACCTTGGGCATATCGGGGCCTCCTTTCATTCGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAGGGCAAACCATGTCATCACTTAGCTACAAAGAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACACTCTACCCTGGATGTACTGGGCCTTCTTCCGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCAGCACCCAAAAGGGCAAAGGGGCAAAAGGTGAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCAGAGCCATCGCTTCGCGCGAAGGCCTCTGCAAAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCACATACTAAAGGTGGTTGTCAAGTGTACTACTACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCTTTGTCACAGCGGTTGGAAGCGATTCCGGGGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACAATTGTGCTAAATAAACGGCGTGGTACGCCTGTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTCAACAATGCACTTATCCGTGCCTGCAACCTAGACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTGCGTCTTCCGGCCCTCGATAATCGCTCTCACCAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TATCTACTCCATTTACCTCACCCCTTCCGCCGCTCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CACATTCGCGCCGTGTTTCAACCACGTCCTCGCTGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCACCTGGACTCTCGGCGGCACCACCCGCTCCCGTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAAATCTCCCGATCTGTACCCTTCCCCTGTAAACTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTGCCGAAACCGTGGGTCTAAGGCTCGCAAACACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGCATTCGCTGCAAGCAAGCGGTGTACTATACCTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010424.1\|WP_012302874.1\|1889681_1890326_-\|hypothetical-protein	csx19	mkCas0137_csx19_CAS-III-D	unknown
NC_010424.1\|WP_012302887.1\|1918803_1919778_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_010424.1\|WP_012302884.1\|1915322_1915859_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_010424.1\|WP_012301814.1\|1904573_1905968_+\|ISNCY-like-element-ISCde2-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010424.1\|WP_012301814.1\|1912285_1913680_+\|ISNCY-like-element-ISCde2-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010424.1\|WP_041571315.1\|1919755_1921243_-\|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	unknown
NC_010424.1\|WP_166485172.1\|1898049_1898211_-\|hypothetical-protein	unknown	unknown	unknown
NC_010424.1\|WP_012302877.1\|1892059_1892485_-\|hypothetical-protein	csm2gr11	mkCas0136_csm2gr11_CAS-III-A	unknown
NC_010424.1\|WP_012302875.1\|1890322_1891222_-\|hypothetical-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_010424.1\|WP_012302889.1\|1921460_1922255_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_010424.1\|WP_012302883.1\|1914302_1915298_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_010424.1\|WP_166485171.1\|1894460_1896707_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
NC_010424.1\|WP_012302882.1\|1914036_1914300_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_010424.1\|WP_012302879.1\|1893724_1894447_-\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274211
NC_010424.1\|WP_012302878.1\|1892481_1893753_-\|CRISPR-associated-RAMP-Csx10-family-protein	csx10gr5	cd09700_csx10gr5_CAS-III-D	gnl\|CDD\|187831
NC_010424.1\|WP_012301814.1\|1900968_1902363_-\|ISNCY-like-element-ISCde2-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010424.1\|WP_041570922.1\|1918057_1918807_-\|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl\|CDD\|273860
NC_010424.1\|WP_012302876.1\|1891214_1892063_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274211
NC_010424.1\|WP_041570921.1\|1896736_1897984_-\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
NC_010424.1\|WP_012302885.1\|1915913_1918103_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010424.1\|WP_012302874.1\|1889681_1890326_-\|hypothetical-protein	csx19	mkCas0137_csx19_CAS-III-D	4.2e-130	426.2	3.3
NC_010424.1\|WP_012302887.1\|1918803_1919778_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	7.5e-78	256.5	0.0
NC_010424.1\|WP_012302884.1\|1915322_1915859_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	2.7e-47	155.7	0.1
NC_010424.1\|WP_012302877.1\|1892059_1892485_-\|hypothetical-protein	csm2gr11	mkCas0136_csm2gr11_CAS-III-A	1e-83	273.3	5.0
NC_010424.1\|WP_012302883.1\|1914302_1915298_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	6.5e-131	431.0	0.1
NC_010424.1\|WP_041571315.1\|1919755_1921243_-\|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	2e-212	700.9	0.0
NC_010424.1\|WP_012302875.1\|1890322_1891222_-\|hypothetical-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	1.8e-30	100.9	0.0
NC_010424.1\|WP_012302889.1\|1921460_1922255_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	4.5e-33	109.5	0.0
NC_010424.1\|WP_166485171.1\|1894460_1896707_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	2e-48	160.1	0.0
NC_010424.1\|WP_012302882.1\|1914036_1914300_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.7e-26	87.0	0.4
NC_010424.1\|WP_012302879.1\|1893724_1894447_-\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	6.8e-22	73.4	0.0
NC_010424.1\|WP_012302878.1\|1892481_1893753_-\|CRISPR-associated-RAMP-Csx10-family-protein	csx10gr5	cd09700_csx10gr5_CAS-III-D	1.8e-41	137.5	0.0
NC_010424.1\|WP_041570922.1\|1918057_1918807_-\|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	2.1e-21	71.3	0.2
NC_010424.1\|WP_012302876.1\|1891214_1892063_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	9.4e-50	163.7	0.0
NC_010424.1\|WP_041570921.1\|1896736_1897984_-\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	1.3e-34	114.2	0.0
NC_010424.1\|WP_012302885.1\|1915913_1918103_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	9.9e-70	230.3	0.0

Protein	Function_ID	Function_description	E-value
NC_010424.1\|WP_012302887.1\|1918803_1919778_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	8.63666e-85
NC_010424.1\|WP_012302884.1\|1915322_1915859_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.01639e-64
NC_010424.1\|WP_012301814.1\|1904573_1905968_+\|ISNCY-like-element-ISCde2-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.10735e-16
NC_010424.1\|WP_012302883.1\|1914302_1915298_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	8.57039e-162
NC_010424.1\|WP_041570921.1\|1896736_1897984_-\|DUF1887-family-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	1.0207e-22
NC_010424.1\|WP_012302889.1\|1921460_1922255_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	5.40338e-40
NC_010424.1\|WP_012302875.1\|1890322_1891222_-\|hypothetical-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.18173e-26
NC_010424.1\|WP_012302882.1\|1914036_1914300_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	9.02092e-27
NC_010424.1\|WP_012302879.1\|1893724_1894447_-\|hypothetical-protein	gnl\|CDD\|274211	TIGR02581, putative_CRISPR-associated_protein, CRISPR-associated RAMP protein, SSO1426 family. Members of this CRISPR-associated (cas) gene family are found in the RAMP-2 subtype of CRISPR/cas locus and designated TM1809 family.	2.33365e-20
NC_010424.1\|WP_012302878.1\|1892481_1893753_-\|CRISPR-associated-RAMP-Csx10-family-protein	gnl\|CDD\|187831	cd09700, Csx10, CRISPR/Cas system-associated RAMP superfamily protein Csx10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Duplicated RAMP domains.	3.7617e-36
NC_010424.1\|WP_012301814.1\|1900968_1902363_-\|ISNCY-like-element-ISCde2-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.10735e-16
NC_010424.1\|WP_041570922.1\|1918057_1918807_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	2.50375e-17
NC_010424.1\|WP_012302876.1\|1891214_1892063_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|274211	TIGR02581, putative_CRISPR-associated_protein, CRISPR-associated RAMP protein, SSO1426 family. Members of this CRISPR-associated (cas) gene family are found in the RAMP-2 subtype of CRISPR/cas locus and designated TM1809 family.	6.24835e-50
NC_010424.1\|WP_012301814.1\|1912285_1913680_+\|ISNCY-like-element-ISCde2-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.10735e-16
NC_010424.1\|WP_012302885.1\|1915913_1918103_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	1.82402e-65

>NC_010424.1|WP_012301814.1|1900968_1902363_-|ISNCY-like-element-ISCde2-family-transposase
MLCLRQEESRQVSFLDYILPPEVLELPEDLAKLDAWLDDERFFEPFQDKYHRCLGRPSVPAETYLRMTALKHQYRLSDRQVCALVKDRISWRRFCRIPWNKPVPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPTDSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIKKRVLAIAKVLKRRTGESIQEVRRITGEMADIAEKTLQDARNVVQHLHQQARHLAGTARDEKRRLAARLEKILDLGEQIVSQARQVNAGQLNLPERVVSLSDPEARPIRRGKAHKETEFGYKVRLTESTERLVTEYDVMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGKRSHSRTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYNLNRIAKLI
>NC_010424.1|WP_166485172.1|1898049_1898211_-|hypothetical-protein
MAVWFSQAVVVLWGRPMVHLTYPPLLGWGVSGVVLTFWVLRNMTLSVFEVLHL
>NC_010424.1|WP_041570921.1|1896736_1897984_-|DUF1887-family-protein
MAVAKAEAKSKVMVVLVSEQRMQNLIPCFQKDSTITNVHLVRSSDADNPDSRLGKAWSDTKAVLEERKLEVVDADVAVDAYDPASTEKVVKRLLDKLAHHKRTAVVNFTGGTKCMAVGAYLAARQAGVATLYVDTARRQLLLRAHDDQPCAVPFELDGLSIDTYFRAYGLNPRVNDGQILERYAKIMTVIRRYWPGSAATLDMWGKHFDQKSSSRRKRRLSGAVKVSWRPSDEVECELWAVLEEARLFCQEGEEFFASAEARQFLTGRWLECLTYQLLRESNCFDEVAFDLHLTEKNTALAAGPGEASPASTTAPTGGAANQLDVVTIEQGNLAVFECKSGNLRGQDTLNKLQALWTRLGTFARLFLVTSCPLDEISGDFRYRARAYRLARIITREDLEDAGKLKDAVLKAVGGS
>NC_010424.1|WP_166485171.1|1894460_1896707_-|hypothetical-protein
MFEWRDGFTGRRYGFTKEQQDAARRLVAGLLEAKLKKEVGDDLRALADAAAAFWARDYYRLVFPLAFGREVVDGGVRAVFLDDPGDRVDQTAVFRRAPLDGAARPPLLPAGGRAPAEYLLADVVLVRAALANIYCRQRGVDPGLLHVLRLACFTGPLAAELAASGFDLPEEVRRLVDFLEGDGEPPAELDAEDLRRLWEAGAVAAEEAMDIAPASFAVTVVVGAVQRVKQYVFETPGLNEIRGGSEILSDVTERLAVDVATELGAEVVLRAAGSHLEFLVPDAETGAAWEARLRREFVAATGGVLVAAAAETLPVRDLLGDYYRAMGRVYQRLEAARNQTRPLYPETLPFEERCAICGQRAAEGWYQPPEGDAEPICRVCLIKREWGRDARRDKTRELEEQLRGGGRALWGLGADAGLPQSLDDLIVGHPRRRLVAVVYGDGNNFGAVVQQLKNIAVARQWTCRVEAVTWSATALALAEAVRVSVPAPHAAAKEAQRKPSLPFQVLALGGEDIGLFAWGPVGLRFAERFVALTDREFTPAPGHDGARICFSLGVLVADAKAAVARTVAFSEGELLKWAKRAARNAGYRDGGTIAFLVVPTADQIPGDLDDFQQTMYYREGATFPVCLTLRPVTAAELGFLLDRAARLREAGFVGALGRMAAAFVRGEPRVAVLYYLYQKARERKGRDDGGFTALLEDTRERPPTLADLDFAGRVLGTRRPFGGEPVAGGRETYFAPLVDLAELVKVLE
>NC_010424.1|WP_012302879.1|1893724_1894447_-|hypothetical-protein
MNEVWRLTVEVRPLGMLHVAGPGRPRPLVDRTVAVDARGRPYLPASSVRGRVRAHLERLLRAYGLPVCTPPRPQHMCPHAGLAGTSDGYCLACRLFGSPWRAGAVTVNDFYPVGVFEATEAEWERNMVVRTGIGISRKLGTVREERLFFTEAVPGDDALRFRGTLEARAERAVVGWLVGTLGLVTHLGGQKGRGLGRVELDVSGVAVWTPGRGWEEMTEHEVESFCREVVSLALAGTVAG
>NC_010424.1|WP_012302878.1|1892481_1893753_-|CRISPR-associated-RAMP-Csx10-family-protein
MRWQVRLRVEGPLLVGKGTPTQNVLLGRDYIPGSVWRGALAEAVLRAAGALAPGAAGQAAELPPEFGLAFGPETRFGFLYPVPGEKWDGFPLPLTVRSCKARPGFACGVHGRGKGGGHGVLDMLLVTLRRHLGLAEELSPGCPECRERLDRFRGVAARMPLSAGQDTAYETVKVRRQLLVRVGLDRRTETAADGVLYALDAQVPGRDRALYFTGTWRGTPEALHALHQLLDGACPRAGDGWAIRVGTARARGLGRAVLEITEAQAVFLPPLEERLEAFQPRQGDGQPADPDHLCFALLLKAPLLVRDAAGVACGLPAAAVLAPYVTSLPVGLEFLETVSVLEWESSDGWAMAWGLPKPVQAALAPGSVLAYRAPARERRAVLAFLEEVENGGLGERTAEGWGEVVACDPLHLKCDAGKEAVKQ
>NC_010424.1|WP_012302877.1|1892059_1892485_-|hypothetical-protein
MKSVQQAVDALNEQLVARAEKIVQALGPRDENQQDVSKSQLARAIDVARAAQSAAVFQNWLAYQAGRKETGAFWTTQVGGRPLIRWVEGTLGWIEKEIDAQQLGDAAVRRQAVTEALVRFLGFLRRAFVGAKFVLERGKER
>NC_010424.1|WP_012302876.1|1891214_1892063_-|CRISPR-associated-RAMP-protein
MRAFAAAGFWDTFRHRLVVTGELVCDTALRVGAGTEALLPSASDLPVVTTGGRPYIPGSSLRGVVRSQVERLVRTLEREPRNGRGACDPLEDTGWCIPRKEMQDLRRKVRERDEGRDDWLAQQVWERSCRVCRIFGSPWLASRVRFSDLFPLGETHPEVRDGVAIDREREAVKNKYDFEVVPAGTRFALEIMAENLGTPAERSLLWLGLQELAEGGVPVGGFKGRGLGRVHLEHLRVRYVDATDREALQAYLVRRDWREAGTEERQEWLNAFFAECGGEAGA
>NC_010424.1|WP_012302875.1|1890322_1891222_-|hypothetical-protein
MHSRFYNEAVFTLTVSPRTPLLIKAGGEGAAAMDPTVPDMNFVRTRRPDGREVLFIPGASFRGVLRAHAERLLRSVRPQAACDPLAHRKKRETYDLEKACTFDDKSSGPEAYRGACHACRLFGATGLASRVRVSDFYPEGALATDTRYGVAIDRVTGAVAHGPFELEIVTEGSFAGELTLRNFTLGQFGLLGAALLDVADGLVPLGFGKSRGLGRVAVEITRLAVRTLRDPESHILGVGALCDEAARRAFAVPGADRERLLVAGAHTSRARGLFVLEAAGETARRWLEAAAPRWVGELA
>NC_010424.1|WP_012302874.1|1889681_1890326_-|hypothetical-protein
MTGYVLTFRENLDNGSDAVEMVRGVFAATGARLDEGFWAPGATWWYAWNELEIQLPTVCATAADLDAGRLFNPRWVVVRVFAPPAELRWERQGRGRVVCLLLEDNARRRLPPTLVAGAVHKETYLATPGRRLWSGRRLDLPGGSRRGRVEFPRPLDYGVEDHDYSKPLAARVYLYQDEDGLVQLVRYAEPELLSERVAVRPLGHRDRTLTAEGG
>NC_010424.1|WP_012301814.1|1904573_1905968_+|ISNCY-like-element-ISCde2-family-transposase
MLCLRQEESRQVSFLDYILPPEVLELPEDLAKLDAWLDDERFFEPFQDKYHRCLGRPSVPAETYLRMTALKHQYRLSDRQVCALVKDRISWRRFCRIPWNKPVPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPTDSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIKKRVLAIAKVLKRRTGESIQEVRRITGEMADIAEKTLQDARNVVQHLHQQARHLAGTARDEKRRLAARLEKILDLGEQIVSQARQVNAGQLNLPERVVSLSDPEARPIRRGKAHKETEFGYKVRLTESTERLVTEYDVMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGKRSHSRTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYNLNRIAKLI
>NC_010424.1|WP_012301814.1|1912285_1913680_+|ISNCY-like-element-ISCde2-family-transposase
MLCLRQEESRQVSFLDYILPPEVLELPEDLAKLDAWLDDERFFEPFQDKYHRCLGRPSVPAETYLRMTALKHQYRLSDRQVCALVKDRISWRRFCRIPWNKPVPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPTDSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIKKRVLAIAKVLKRRTGESIQEVRRITGEMADIAEKTLQDARNVVQHLHQQARHLAGTARDEKRRLAARLEKILDLGEQIVSQARQVNAGQLNLPERVVSLSDPEARPIRRGKAHKETEFGYKVRLTESTERLVTEYDVMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGKRSHSRTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYNLNRIAKLI
>NC_010424.1|WP_012302882.1|1914036_1914300_-|CRISPR-associated-endonuclease-Cas2
MYVILVYDVNVARVGKVLKRARRYLTWVQNSVLEGELTEASYRALKSDLARVIDTREDSVLFYVLGARKYTRRELMGVQKGGEEWIY
>NC_010424.1|WP_012302883.1|1914302_1915298_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MQKTLYLFASGRLRRKDNTVCLESENATKYFPVASLRDIFVFGELDLNKKLFEFMEEQEIVLHFFGYYGNYVGSFYPREHYNSGYVILRQAEHYLDGARRLELARRFVEGALANILQILRYYQNRGKELAGSIESISRLLEGSLPACGRVEELMAVEGNAREYYYESFNVILDKSPFTMPGRSKRPPTDPLNALISFGNSLIYAKILTEIYKTHLDPRIGYLHSTNFRRFTLNLDLAEIFKPVLADRVLFHLLGKKMLDLKDFEQQGGAYLLRERGRRLYVETLEEKLQSTFHHRRLRRNVSYQTLLRLELYKIQKHLMGEQPYKPFVSRW
>NC_010424.1|WP_012302884.1|1915322_1915859_-|CRISPR-associated-protein-Cas4
MGIDAKFQEAAPFHLQPVVGSMVNAYIICPRKAWLMSRQICPDEDNTYLHLGRLIQNQSYGRERKEVRLEHLCLDLIRREEETLVVAEVKKSSRAREAARMQLAFYLYELEQMGVEAEGELLFPEERRRERMVLDPELARQVENLKARVRALILAPSAPLPTRIRFCARCAYAEFCWA
>NC_010424.1|WP_012302885.1|1915913_1918103_-|CRISPR-associated-helicase/endonuclease-Cas3
MDELVLLGKPDVPLLAHLKEVTEQGKILARHLGLPPALEKRALLACAFHDVGKATRSFQDYMRGKRGKGYPHALASLPFALAAELYTLQASPLAAAAVLSHHSPLGPEVYRGYRAPDYVDEKNLAAFLEDVVAFLQGLGWEGNLPAVEKLLKLATSDGTPATLLDNSRFRFGEELISLRGLFKELPPIDFADIKAVLQLADWVASSGKAQAGDLFLHQGRKLVLTSIKEKSIQLRPFQKKAGEMKRERLWLRAPTGTGKTEALLLWAGDTERLLYLLPTQATANAMWKRLKKIYGEENVGLAHGRAGYILRKELEEDPLDVRLWASVFARPVVVGTLDQYLMAHLQGRHWEIRRSLARRATVVLDEIHSYDPYTLGLLQEALAQEPPARLALASATLPEFLPELLGQGPLLEAEEPLWQRKRHELRLFVEPVASALEEALSFVRQGKTVLVIANTVKQAQEIYQALQEDGDYQVHLLHSRFAFRDRWKKEEQLGKTIPGTILVATQIVEVSLDISYDVLFTEVAPIDALVQRLGRVNRRGITPEGTTAPPAPAFIFLEWDKGSEKIYGQEILTWSRDILNDMPQHPTDGEWVQATNRLYEVQASSPSYQEDLREGQQTLREVQRISGCYTIDLSDEEMQKKFTTRKGQLSVEVLPQALKDEAFALRERGEHWRLVELLVPVPVYWLPAFSHWFSPLSDLGVFLTDLPYSEEMGLMPPGEGEAPPGMEIY
>NC_010424.1|WP_041570922.1|1918057_1918807_-|CRISPR-associated-protein-Cas5
MNVLWVKVTAPLASFRRPLDHNYQRTLPLPPPTTLFGLAGAARGLAEEELWQEASPLRDLLVATLALQKPGLARDMWTVMKIKNNKLAERSPYFREILFNARFMILYGGPEELLAELQQAFLDPTYPLSLGREDELIVVEELGRGETCPGAPLFSGTVIPGDLQGLRFKWVPRPGIAFEPPAVETMPLAFEVDKRGIRYPLNPRPFTFLPYDLEVELEGYQDALTIEPLEGRSFTWMNWSSWESRTSLF
>NC_010424.1|WP_012302887.1|1918803_1919778_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MNNLQQSKAIALGYLMKVSAGNINASHTEGNVMVAKKVTLPDGSSVPYFSGQAKRRMLRDRLEDLGFTLSEASALVSGQEVTPPVRPWEFVDEDLFGYLDPSGNRRRTSPVRVSAAVGLFSFQGDRDLGTRSFERFGQDMAAGGNMFETELYANMFKGNMLVELDRAGIFSDQEVGKNNKEIPEALEKIERNGRLFYVLPGEERQRRLQALLDALGLLWGGGRTARMLSDLSPRFFVYARLRVKHPVFLEALQARYLEGRYGLVPDPLRTALDKFKDFRQAVIFGLEAGFLGNEEEIRAELQNYGPVLSVHEAIAQAKEDIKKL
>NC_010424.1|WP_041571315.1|1919755_1921243_-|hypothetical-protein
MIQVQLDLRHSTGNFWIDNGLVYLVNELGQGTYPVDNILALVQERLLQKTGNVGQYFDEVTGELKNYDKVTWVYPTGFFIKVVDAPPKKKVNGKEYPLSPPHPRLEFLFSKTKKQCNICGAQASATDAKMWMFPFIVAPDKFGSFYSRGKRGINLCPRCAVAGTAGYLTWLWVAQGRTALHFFLFHSDLAEISRLQKEVIQPLALSGSRGGNIVLPFYGPYLHETTMALLLKLFAHVQSSDQIPEEGRMLLASLLGADETLPPAPLTLYAITGNPGQAFNMQLFREFSRLHALYRLYQDWLEVVPAENPQQTLINVFRQFQVREGNQYNTLWREKISWAVLEFDDPLPSVEAFLFEARAKEKNLPPLFQGTEAVLSYYAKEVLHVDENLLKVLKGFGYTLGTEAQKSNEMGLLYALRNAKNLEEFLRVLNDIQFRLEITVPERLVEIGQGERIAGSPWLRVKTLLSIYAMNSYLRAARGSRTEEGGNVYEQPATE
>NC_010424.1|WP_012302889.1|1921460_1922255_-|CRISPR-associated-endoribonuclease-Cas6
MQLTIFFSAPGPVAIPVQYGHLLQGLIYRRMDNPVLRSYLHEHGFALEKRRFKLFTFSRLMGQAVTYDQAAGRLVLTPPLRLVICSPIPFILQELGTGFLRQGRVRLGDAHLEVKKMATAAPWVTRETLQVRMLSPLVVYSTLSGVDGRNYTYYYSPFEPRFTELVASNLAKKHFLVYGQPARAEGFAIRPVRVEDRDLKVTYYKDTVIKGWMGEYELSGDLELLQLALDAGLGSKNSQGYGCCNLVEKASQVSSRYRRNSNIM

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Crispr_ID: NC_010424_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010424_6

1906089-1912072

TypeIII

Consensus_repeat	Method
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CRISPRCasFinder
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CRT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	PILER-CR

90 spacers

csx1,cas10,csm3gr7,csx10gr5,csm2gr11,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6,cmr6gr7

The CRISPR arrays of NC_010424_6

>merge|NC_010424|6|1906089-1912072|CRISPRCasFinder,CRT,PILER-CR
TTTTCAGCAGAATCTAGGTAGGCTGGAAACTCAAGAGCTGTTCCGCCAGCGGCTTATCGAATTGAGTTTCAATCCCTCGTAGGTAGGCTGGAAACGGTTGTCTCCAGCGGCATTATGGCATTTAGTGGATCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTAGCTTGGCTGCTCGCTGGCAGCAGTCTGGGCACGTTTCAATCCCTCGTAGGTAGGCTGGAAACGACCGAATATCCGCCGGTAGTCGTATCCCATTGCAAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCGGCTATGCGGCCAACCGCACGGCGGCGGTATTTAGTTTCAATCCCTCGTAGGTAGGCTGGAAACACGATAGGCAGGGTTTTAGGCGCAGGCATTAGCATGTTTCAATCCCTCGTAGGTAGGCTGGAAACGAATTCGTTTTCAGGATATTCAGCGGGGTCTAAGATTGTTTCAATCCCTCGTAGGTAGGCTGGAAACATTACTTATCGTGGGAAATCTAAAAGCATAGCACAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACAAGCTAAAGTCCCAGCAACGCTCCAAAAGTGGGCACGTTTCAATCCCTCGTAGGTAGGCTGGAAACCAAAAACCAGCGAAACCGGCAAAAACTCTGTCGAACGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTGGTTCCTTGTTCTTTGAAAACATTAATTTGAGGGTTTCAATCCCTCGTAGGTAGGCTGGAAACGGCGGAAGAAGGCCCAGTACATCCAGGGTAGAGTGTGTTTCAATCCCTCGTAGGTAGGCTGGAAACATTATCAACATCGAGGTAATCGATCATGCTTAGATGGTTTCAATCCCTCGTAGGTAGGCTGGAAACAGACACCCACGCACCACTTCCATCAGATCGTGCTAGGTTTCAATCCCTCGTAGGTAGGCTGGAAACACCGCCATAGCCCGTGATCTGCACCCGACCCTACGTGTTTCAATCCCTCGTAGGTAGGCTGGAAACGTTGGCGGGTAAGGAGTGAGAGAGTGAACCGACCTGGTTTCAATCCCTCGTAGGTAGGCTGGAAACAGGAGGTGGAAGAATGGGTTACGTAGGCTGCCCAGCAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACGATCGTTGGGGTAAGAGAGACCAAGTGGCGGTCAAGGGTTTCAATCCCTCGTAGGTAGGCTGGAAACAAACACCAGGGCGCGAAACACAAGCACATACCAAGGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTTTGTGGGGTTATCCACAGAGATGTGCTTGTTGTGTTTCAATCCCTCGTAGGTAGGCTGGAAACGACAGCGGGGGGTGGTACGTGCTAGGCTTAGAATCAAGGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTTTCGGTTTCTGTTTCTGGTTTCGGTTTCTGTTTCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGCGCCGCAAAGCAGCCAGAACGAAGGTGCGCCTACGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGTTCTATTGTACTGAACGCGGGCGGCATCCTATCCGTTTCAATCCCTCGTAGGTAGGCTGGAAACAGTTCTGCAATTTGTGCGTCAAGCTCAAGATACCGCTGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCTTATACCGAGAGTTGTCTATCTAGCCGGGGGAATGTTTCAATCCCTCGTAGGTAGGCTGGAAACACCCCGAAAGTCGGCGTAGCTTCCTCCCAGAAGCCGCAGTTTCAATCCCTCGTAGGTAGGCTGGAAACACGAGCAGGGATGGCTTGTGAGAAGGTGGAGCAAATGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACGAAATTATAAGTCTGGAAACCTTTTCTAGTTTGTACCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGGAAAGGAGGGTGAAGAAATGCCGAGGATTTGGGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCGGACGGGCGCTGAACGTGGACCCGTCGTTCGTGTGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCGGTTCCGGCTCCGACGCCTCTGGACGACCTGTTTGGTTTCAATCCCTCGTAGGTAGGCTGGAAACACGGCACGGCTTCGGCGGCCGACATTCTGACCGATTGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGCAAGTGCTGGCAGTAATGGTGGTGCTGGAGCTACGTTTCAATCCCTCGTAGGTAGGCTGGAAACGGTCCCCGTGATCCCGGGCCACGATGGTCGCTGGCCGTTTCAATCCCTCGTAGGTAGGCTGGAAACACAACCAGCAGACTGCACGTGTAATTCAGCAGGCGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACGTGCCGTTCAGTCTATCACGTCCTGCACCGCACCCAGTTTCAATCCCTCGTAGGTAGGCTGGAAACGATAAAAAATGTTAAAAGATCGCTGGGGAAGTATCAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACGATTTGGGCAACGATGACCTTCATCCCCCTTGGCGGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACAGTGATCGAGCAGGTTCGGGCGCATGCACGAATTGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACGGAGAAGTGGCCGTAAGGTCAGCGAGACCGATTGACGTTTCAATCCCTCGTAGGTAGGCTGGAAACGATGGCGGGGCAACTGGGCCCACAACCTGGCCGGGATGTTTCAATCCCTCGTAGGTAGGCTGGAAACCGCACGGGGCAGACAACCCTTGGCAAAACAAAAACGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGAAAGGGGATTCAATGATCGGTGCCCGGATTCTTGAGTTTCAATCCCTCGTAGGTAGGCTGGAAACGCTAGCCCTGCTTCAGTGCCACTTTTGCCGCCTCTTGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCTCCTTCACCTCTCGGCCGCCTGCGGCAGATCAGGGTTTCAATCCCTCGTAGGTAGGCTGGAAACGGCCTGGCCCTTCAGCCAGACCTTGATCCAGATGTTGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCGGAAATCCTCTGCAAATAACTCCTCCTTGCAAACGTTTCAATCCCTCGTAGGTAGGCTGGAAACTGCAATGCTGCATTTTTGCGGGTGGAAGTGCTTGAGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTCCCACGGGATCGTCGGCCGGTTCTACGAGCAGTGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCTCTTTCCTTCTTTCTTTACTTCTTCCTGCCGGGATTTAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCAATGAGCATGTTTTCCTAGCCGGACGCACCGGGTCCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAGGTTTCAATCCCTCGTAGGTAGGCTGGAAACTATCCGGGATGCTGATCCTGTTCGGCGCGTTTATTCTGTTTCAATCCCTCGTAGGTAGGCTGGAAACGGTGCTCGCGCGCGGCGGCGTGAAGGACCGAGATTAGTTTCAATCCCTCGTAGGTAGGCTGGAAACACAGGTGGCAGTGATGAGCAAATTGCTTAAAAAGGGTTTCAATCCCTCGTAGGTAGGCTGGAAACGTATTTTCGTGTGACTGGAGCTCTTATGTTACTATGGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCTCTTTCCTTCTTTACTTCTTCCTGCCGGGATTTAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAGGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTTTGCAAAGTGAGTTGAGCAACTTAATGTCCCGAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAGGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTTTGCAAAGTGAGTTGAGCAACTTAATGTCCCGAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCGTAGCGCCGCGCAGGTGGCTTCTAACTCAGCAACGGTTTCAATCCCTCGTAGGTAGGCTGGAAACGAGGCCATCATGAATGGCTTGAAGCGGGCCAAGACCTGTTTCAATCCCTCGTAGGTAGGCTGGAAACGCTCCGCGAGGACCTGGAGTGCTGCCGCCGGCTGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACGAAGGTGCAGGAGAGTATTTCGGCCGGAATAATTCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCGGGTGATCCCGTTGGGTACAGAGCTGTACGTTGGTTTCAATCCCTCGTAGGTAGGCTGGAAACAGCTGCCCGATGATGAGTTGTACCGGCTGATTGCCCTGTTTCAATCCCTCGTAGGTAGGCTGGAAACGTGATAGGCCATATTTCATAGCAGCCTTTAGCTCTGTTTCAATCCCTCGTAGGTAGGCTGGAAACGGTGAAAGGAGCGACAAGCAAGCAGGCAGACAGAAGGTTTCAATCCCTCGTAGGTAGGCTGGAAACACGGTTAGGGGAACGGTTAGGGGAACGGTTTGCCTAAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCACCCCAACCCCTCCGGGAGTAAAACCTACGGAGGGGTTTCAATCCCTCGTAGGTAGGCTGGAAACGTCAATACAACAGAATAAAATTCGCCGAGATTCGGCAGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTTTCGGGCAGAGTTAACCACTCTGCCCAAAGCCCCGGATGTTTCAATCCCTCGTAGGTAGGCTGGAAACCACCCCAACCCCTCCGGGAGTAAAACCTACGGAGGGGTTTCAATCCCTCGTAGGTAGGCTGGAAACGTCAATACAACAGAATAAAATTCGCCGAGATTCGGCAGTTTCAATCCCTCGTAGGTAGGCTGGAAACGACTATCCTATCCCGAAGAATGGAAATACAAAGAATGTTTCAATCCCTCGTAGGTAGGCTGGAAACGAGATCGCTGGGGCAGCATTAGAGGTGTGAAGACTGTTTCAATCCCTCGTAGGTAGGCTGGAAACTTTTTGTATCCACTTGTGATCCTAGTTCGTGTAGAGCCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTCTTGTCACCCCCTTGCTTTTAGTGCTGGTTTAGTGTTTCAATCCCTCGTAGGTAGGCTGGAAACGGCTAAAGAAAGCCTTAGCGCTGCTGATCTTTTTCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCGACAAGAAAAACACTGTCGAGCTAGTCCTCCCCGAGTTTCAATCCCTCGTAGGTAGGCTGGAAACCCAACGAACCAACGAACATGAACTAGAGTGTTAGTTGTTTCAATCCCTCGTAGGTAGGCTGGAAACACGCTTGTAATATCCTTGTATCAAGCCGAAAAAAATGTTTCAATCCCTCGTAGGTAGGCTGGAAACCGCTGTAGTTTCTACATGTAGAAACTCACCCGCGCCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTCCACTCGTCACCCAGAGCGGCATCCAGAATCGGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTAATGATCCGCTGGACGGTGAAGTTTTGATTGCGGGGTTTCAATCCCTCGTAGGTAGGCTGGAAACCTCACTAAACGACAAGTGTAGTATAATCAAAGTAGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACTACTATGGACCGTGCGAAGCATGCGGCGAGGAAGCGTTTCAATCCCTCGTAGGTAGGCTGGAAACCATGCCGACCCGGATCAGGACCTGGCCGGTTAAGAGTTTCAATCCCTCGTAGGTAGGCTGGAAAC

>NC_010424|6|6|1906089-1912072|CRISPRCasFinder
TTTTCAGCAGAATCTAGGTAGGCTGGAAAC	TCAAGAGCTGTTCCGCCAGCGGCTTATCGAATTGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTTGTCTCCAGCGGCATTATGGCATTTAGTGGATC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTAGCTTGGCTGCTCGCTGGCAGCAGTCTGGGCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GACCGAATATCCGCCGGTAGTCGTATCCCATTGCAAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGGCTATGCGGCCAACCGCACGGCGGCGGTATTTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACGATAGGCAGGGTTTTAGGCGCAGGCATTAGCAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAATTCGTTTTCAGGATATTCAGCGGGGTCTAAGATT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ATTACTTATCGTGGGAAATCTAAAAGCATAGCACAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AAGCTAAAGTCCCAGCAACGCTCCAAAAGTGGGCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAAAAACCAGCGAAACCGGCAAAAACTCTGTCGAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTGGTTCCTTGTTCTTTGAAAACATTAATTTGAGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGCGGAAGAAGGCCCAGTACATCCAGGGTAGAGTGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ATTATCAACATCGAGGTAATCGATCATGCTTAGATG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AGACACCCACGCACCACTTCCATCAGATCGTGCTAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACCGCCATAGCCCGTGATCTGCACCCGACCCTACGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTTGGCGGGTAAGGAGTGAGAGAGTGAACCGACCTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AGGAGGTGGAAGAATGGGTTACGTAGGCTGCCCAGCAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GATCGTTGGGGTAAGAGAGACCAAGTGGCGGTCAAGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AAACACCAGGGCGCGAAACACAAGCACATACCAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTGTGGGGTTATCCACAGAGATGTGCTTGTTGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GACAGCGGGGGGTGGTACGTGCTAGGCTTAGAATCAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTCGGTTTCTGTTTCTGGTTTCGGTTTCTGTTTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCGCCGCAAAGCAGCCAGAACGAAGGTGCGCCTAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGTTCTATTGTACTGAACGCGGGCGGCATCCTATCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AGTTCTGCAATTTGTGCGTCAAGCTCAAGATACCGCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTTATACCGAGAGTTGTCTATCTAGCCGGGGGAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACCCCGAAAGTCGGCGTAGCTTCCTCCCAGAAGCCGCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACGAGCAGGGATGGCTTGTGAGAAGGTGGAGCAAATGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAAATTATAAGTCTGGAAACCTTTTCTAGTTTGTACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGGAAAGGAGGGTGAAGAAATGCCGAGGATTTGGGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCGGACGGGCGCTGAACGTGGACCCGTCGTTCGTGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCGGTTCCGGCTCCGACGCCTCTGGACGACCTGTTTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACGGCACGGCTTCGGCGGCCGACATTCTGACCGATT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCAAGTGCTGGCAGTAATGGTGGTGCTGGAGCTAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTCCCCGTGATCCCGGGCCACGATGGTCGCTGGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACAACCAGCAGACTGCACGTGTAATTCAGCAGGCGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTGCCGTTCAGTCTATCACGTCCTGCACCGCACCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GATAAAAAATGTTAAAAGATCGCTGGGGAAGTATCAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GATTTGGGCAACGATGACCTTCATCCCCCTTGGCGGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AGTGATCGAGCAGGTTCGGGCGCATGCACGAATTGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGAGAAGTGGCCGTAAGGTCAGCGAGACCGATTGAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GATGGCGGGGCAACTGGGCCCACAACCTGGCCGGGAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGCACGGGGCAGACAACCCTTGGCAAAACAAAAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGAAAGGGGATTCAATGATCGGTGCCCGGATTCTTGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCTAGCCCTGCTTCAGTGCCACTTTTGCCGCCTCTT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTCCTTCACCTCTCGGCCGCCTGCGGCAGATCAGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGCCTGGCCCTTCAGCCAGACCTTGATCCAGATGTT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCGGAAATCCTCTGCAAATAACTCCTCCTTGCAAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCAATGCTGCATTTTTGCGGGTGGAAGTGCTTGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTCCCACGGGATCGTCGGCCGGTTCTACGAGCAGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTCTTTCCTTCTTTCTTTACTTCTTCCTGCCGGGATTTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAATGAGCATGTTTTCCTAGCCGGACGCACCGGGTCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TATCCGGGATGCTGATCCTGTTCGGCGCGTTTATTCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTGCTCGCGCGCGGCGGCGTGAAGGACCGAGATTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACAGGTGGCAGTGATGAGCAAATTGCTTAAAAAGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTATTTTCGTGTGACTGGAGCTCTTATGTTACTATG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTCTTTCCTTCTTTACTTCTTCCTGCCGGGATTTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTGCAAAGTGAGTTGAGCAACTTAATGTCCCGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTGCAAAGTGAGTTGAGCAACTTAATGTCCCGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGTAGCGCCGCGCAGGTGGCTTCTAACTCAGCAACG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAGGCCATCATGAATGGCTTGAAGCGGGCCAAGACCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCTCCGCGAGGACCTGGAGTGCTGCCGCCGGCTGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAAGGTGCAGGAGAGTATTTCGGCCGGAATAATTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCGGGTGATCCCGTTGGGTACAGAGCTGTACGTTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AGCTGCCCGATGATGAGTTGTACCGGCTGATTGCCCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTGATAGGCCATATTTCATAGCAGCCTTTAGCTCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTGAAAGGAGCGACAAGCAAGCAGGCAGACAGAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACGGTTAGGGGAACGGTTAGGGGAACGGTTTGCCTAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CACCCCAACCCCTCCGGGAGTAAAACCTACGGAGGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTCAATACAACAGAATAAAATTCGCCGAGATTCGGCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTCGGGCAGAGTTAACCACTCTGCCCAAAGCCCCGGAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CACCCCAACCCCTCCGGGAGTAAAACCTACGGAGGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTCAATACAACAGAATAAAATTCGCCGAGATTCGGCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GACTATCCTATCCCGAAGAATGGAAATACAAAGAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAGATCGCTGGGGCAGCATTAGAGGTGTGAAGACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTTGTATCCACTTGTGATCCTAGTTCGTGTAGAGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCTTGTCACCCCCTTGCTTTTAGTGCTGGTTTAGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGCTAAAGAAAGCCTTAGCGCTGCTGATCTTTTTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGACAAGAAAAACACTGTCGAGCTAGTCCTCCCCGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCAACGAACCAACGAACATGAACTAGAGTGTTAGTT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACGCTTGTAATATCCTTGTATCAAGCCGAAAAAAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGCTGTAGTTTCTACATGTAGAAACTCACCCGCGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCCACTCGTCACCCAGAGCGGCATCCAGAATCGGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAATGATCCGCTGGACGGTGAAGTTTTGATTGCGGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTCACTAAACGACAAGTGTAGTATAATCAAAGTAGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TACTATGGACCGTGCGAAGCATGCGGCGAGGAAGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CATGCCGACCCGGATCAGGACCTGGCCGGTTAAGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC

>NC_010424|6|4|1906089-1912072|CRT
TTTTCAGCAGAATCTAGGTAGGCTGGAAAC	TCAAGAGCTGTTCCGCCAGCGGCTTATCGAATTGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTTGTCTCCAGCGGCATTATGGCATTTAGTGGATC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTAGCTTGGCTGCTCGCTGGCAGCAGTCTGGGCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GACCGAATATCCGCCGGTAGTCGTATCCCATTGCAAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGGCTATGCGGCCAACCGCACGGCGGCGGTATTTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACGATAGGCAGGGTTTTAGGCGCAGGCATTAGCAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAATTCGTTTTCAGGATATTCAGCGGGGTCTAAGATT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ATTACTTATCGTGGGAAATCTAAAAGCATAGCACAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AAGCTAAAGTCCCAGCAACGCTCCAAAAGTGGGCAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAAAAACCAGCGAAACCGGCAAAAACTCTGTCGAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTGGTTCCTTGTTCTTTGAAAACATTAATTTGAGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGCGGAAGAAGGCCCAGTACATCCAGGGTAGAGTGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ATTATCAACATCGAGGTAATCGATCATGCTTAGATG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AGACACCCACGCACCACTTCCATCAGATCGTGCTAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACCGCCATAGCCCGTGATCTGCACCCGACCCTACGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTTGGCGGGTAAGGAGTGAGAGAGTGAACCGACCTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AGGAGGTGGAAGAATGGGTTACGTAGGCTGCCCAGCAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GATCGTTGGGGTAAGAGAGACCAAGTGGCGGTCAAGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AAACACCAGGGCGCGAAACACAAGCACATACCAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTGTGGGGTTATCCACAGAGATGTGCTTGTTGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GACAGCGGGGGGTGGTACGTGCTAGGCTTAGAATCAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTCGGTTTCTGTTTCTGGTTTCGGTTTCTGTTTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCGCCGCAAAGCAGCCAGAACGAAGGTGCGCCTAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGTTCTATTGTACTGAACGCGGGCGGCATCCTATCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AGTTCTGCAATTTGTGCGTCAAGCTCAAGATACCGCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTTATACCGAGAGTTGTCTATCTAGCCGGGGGAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACCCCGAAAGTCGGCGTAGCTTCCTCCCAGAAGCCGCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACGAGCAGGGATGGCTTGTGAGAAGGTGGAGCAAATGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAAATTATAAGTCTGGAAACCTTTTCTAGTTTGTACC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGGAAAGGAGGGTGAAGAAATGCCGAGGATTTGGGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCGGACGGGCGCTGAACGTGGACCCGTCGTTCGTGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCGGTTCCGGCTCCGACGCCTCTGGACGACCTGTTTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACGGCACGGCTTCGGCGGCCGACATTCTGACCGATT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCAAGTGCTGGCAGTAATGGTGGTGCTGGAGCTAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTCCCCGTGATCCCGGGCCACGATGGTCGCTGGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACAACCAGCAGACTGCACGTGTAATTCAGCAGGCGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTGCCGTTCAGTCTATCACGTCCTGCACCGCACCCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GATAAAAAATGTTAAAAGATCGCTGGGGAAGTATCAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GATTTGGGCAACGATGACCTTCATCCCCCTTGGCGGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AGTGATCGAGCAGGTTCGGGCGCATGCACGAATTGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGAGAAGTGGCCGTAAGGTCAGCGAGACCGATTGAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GATGGCGGGGCAACTGGGCCCACAACCTGGCCGGGAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGCACGGGGCAGACAACCCTTGGCAAAACAAAAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGAAAGGGGATTCAATGATCGGTGCCCGGATTCTTGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCTAGCCCTGCTTCAGTGCCACTTTTGCCGCCTCTT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTCCTTCACCTCTCGGCCGCCTGCGGCAGATCAGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGCCTGGCCCTTCAGCCAGACCTTGATCCAGATGTT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCGGAAATCCTCTGCAAATAACTCCTCCTTGCAAAC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TGCAATGCTGCATTTTTGCGGGTGGAAGTGCTTGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTCCCACGGGATCGTCGGCCGGTTCTACGAGCAGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTCTTTCCTTCTTTCTTTACTTCTTCCTGCCGGGATTTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CAATGAGCATGTTTTCCTAGCCGGACGCACCGGGTCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TATCCGGGATGCTGATCCTGTTCGGCGCGTTTATTCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTGCTCGCGCGCGGCGGCGTGAAGGACCGAGATTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACAGGTGGCAGTGATGAGCAAATTGCTTAAAAAGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTATTTTCGTGTGACTGGAGCTCTTATGTTACTATG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCTCTTTCCTTCTTTACTTCTTCCTGCCGGGATTTA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTGCAAAGTGAGTTGAGCAACTTAATGTCCCGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTGCGCTTCCCCAGCAGTACCCCCGCTTGTCTCCAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTGCAAAGTGAGTTGAGCAACTTAATGTCCCGAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGTAGCGCCGCGCAGGTGGCTTCTAACTCAGCAACG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAGGCCATCATGAATGGCTTGAAGCGGGCCAAGACCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GCTCCGCGAGGACCTGGAGTGCTGCCGCCGGCTGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAAGGTGCAGGAGAGTATTTCGGCCGGAATAATTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCGGGTGATCCCGTTGGGTACAGAGCTGTACGTTG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	AGCTGCCCGATGATGAGTTGTACCGGCTGATTGCCCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTGATAGGCCATATTTCATAGCAGCCTTTAGCTCT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGTGAAAGGAGCGACAAGCAAGCAGGCAGACAGAAG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACGGTTAGGGGAACGGTTAGGGGAACGGTTTGCCTAA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CACCCCAACCCCTCCGGGAGTAAAACCTACGGAGGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTCAATACAACAGAATAAAATTCGCCGAGATTCGGCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTCGGGCAGAGTTAACCACTCTGCCCAAAGCCCCGGAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CACCCCAACCCCTCCGGGAGTAAAACCTACGGAGGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GTCAATACAACAGAATAAAATTCGCCGAGATTCGGCA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GACTATCCTATCCCGAAGAATGGAAATACAAAGAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GAGATCGCTGGGGCAGCATTAGAGGTGTGAAGACT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TTTTTGTATCCACTTGTGATCCTAGTTCGTGTAGAGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCTTGTCACCCCCTTGCTTTTAGTGCTGGTTTAGT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	GGCTAAAGAAAGCCTTAGCGCTGCTGATCTTTTTC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGACAAGAAAAACACTGTCGAGCTAGTCCTCCCCGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CCAACGAACCAACGAACATGAACTAGAGTGTTAGTT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	ACGCTTGTAATATCCTTGTATCAAGCCGAAAAAAAT
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CGCTGTAGTTTCTACATGTAGAAACTCACCCGCGCC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TCCACTCGTCACCCAGAGCGGCATCCAGAATCGGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TAATGATCCGCTGGACGGTGAAGTTTTGATTGCGGG
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CTCACTAAACGACAAGTGTAGTATAATCAAAGTAGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	TACTATGGACCGTGCGAAGCATGCGGCGAGGAAGC
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC	CATGCCGACCCGGATCAGGACCTGGCCGGTTAAGA
GTTTCAATCCCTCGTAGGTAGGCTGGAAAC

>NC_010424|6|4|1906103-1912072|PILER-CR
TAGGTAGGCTGGAAACTCAAGAGCTGTTCC	GCCAGCGGCTTATCGAATTGAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGGTTGTCTCCAGCG	GCATTATGGCATTTAGTGGATCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCTAGCTTGGCTGCT	CGCTGGCAGCAGTCTGGGCACGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGACCGAATATCCGC	CGGTAGTCGTATCCCATTGCAAAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCGGCTATGCGGCCA	ACCGCACGGCGGCGGTATTTAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACACGATAGGCAGGGT	TTTAGGCGCAGGCATTAGCATGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGAATTCGTTTTCAG	GATATTCAGCGGGGTCTAAGATTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACATTACTTATCGTGG	GAAATCTAAAAGCATAGCACAAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACAAGCTAAAGTCCCA	GCAACGCTCCAAAAGTGGGCACGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCAAAAACCAGCGAA	ACCGGCAAAAACTCTGTCGAACGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTTGGTTCCTTGTTC	TTTGAAAACATTAATTTGAGGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGGCGGAAGAAGGCC	CAGTACATCCAGGGTAGAGTGTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACATTATCAACATCGA	GGTAATCGATCATGCTTAGATGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACAGACACCCACGCAC	CACTTCCATCAGATCGTGCTAGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACACCGCCATAGCCCG	TGATCTGCACCCGACCCTACGTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGTTGGCGGGTAAGG	AGTGAGAGAGTGAACCGACCTGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACAGGAGGTGGAAGAA	TGGGTTACGTAGGCTGCCCAGCAAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGATCGTTGGGGTAA	GAGAGACCAAGTGGCGGTCAAGGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACAAACACCAGGGCGC	GAAACACAAGCACATACCAAGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTTTTGTGGGGTTAT	CCACAGAGATGTGCTTGTTGTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGACAGCGGGGGGTG	GTACGTGCTAGGCTTAGAATCAAGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTTTTCGGTTTCTGT	TTCTGGTTTCGGTTTCTGTTTCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTGCGCCGCAAAGCA	GCCAGAACGAAGGTGCGCCTACGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTGTTCTATTGTACT	GAACGCGGGCGGCATCCTATCCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACAGTTCTGCAATTTG	TGCGTCAAGCTCAAGATACCGCTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCCTTATACCGAGAG	TTGTCTATCTAGCCGGGGGAATGTTTCAATCCCTCG
TAGGTAGGCTGGAAACACCCCGAAAGTCGG	CGTAGCTTCCTCCCAGAAGCCGCAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACACGAGCAGGGATGG	CTTGTGAGAAGGTGGAGCAAATGCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGAAATTATAAGTCT	GGAAACCTTTTCTAGTTTGTACCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTGGAAAGGAGGGTG	AAGAAATGCCGAGGATTTGGGCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCCGGACGGGCGCTG	AACGTGGACCCGTCGTTCGTGTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCCGGTTCCGGCTCC	GACGCCTCTGGACGACCTGTTTGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACACGGCACGGCTTCG	GCGGCCGACATTCTGACCGATTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTGCAAGTGCTGGCA	GTAATGGTGGTGCTGGAGCTACGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGGTCCCCGTGATCC	CGGGCCACGATGGTCGCTGGCCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACACAACCAGCAGACT	GCACGTGTAATTCAGCAGGCGCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGTGCCGTTCAGTCT	ATCACGTCCTGCACCGCACCCAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGATAAAAAATGTTA	AAAGATCGCTGGGGAAGTATCAAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGATTTGGGCAACGA	TGACCTTCATCCCCCTTGGCGGCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACAGTGATCGAGCAGG	TTCGGGCGCATGCACGAATTGCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGGAGAAGTGGCCGT	AAGGTCAGCGAGACCGATTGACGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGATGGCGGGGCAAC	TGGGCCCACAACCTGGCCGGGATGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCGCACGGGGCAGAC	AACCCTTGGCAAAACAAAAACGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTGAAAGGGGATTCA	ATGATCGGTGCCCGGATTCTTGAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGCTAGCCCTGCTTC	AGTGCCACTTTTGCCGCCTCTTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCCTCCTTCACCTCT	CGGCCGCCTGCGGCAGATCAGGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGGCCTGGCCCTTCA	GCCAGACCTTGATCCAGATGTTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCCGGAAATCCTCTG	CAAATAACTCCTCCTTGCAAACGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTGCAATGCTGCATT	TTTGCGGGTGGAAGTGCTTGAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTTCCCACGGGATCG	TCGGCCGGTTCTACGAGCAGTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCCTCTTTCCTTCTT	TCTTTACTTCTTCCTGCCGGGATTTAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCAATGAGCATGTTT	TCCTAGCCGGACGCACCGGGTCCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCTGCGCTTCCCCAG	CAGTACCCCCGCTTGTCTCCAGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTATCCGGGATGCTG	ATCCTGTTCGGCGCGTTTATTCTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGGTGCTCGCGCGCG	GCGGCGTGAAGGACCGAGATTAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACACAGGTGGCAGTGA	TGAGCAAATTGCTTAAAAAGGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGTATTTTCGTGTGA	CTGGAGCTCTTATGTTACTATGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCCTCTTTCCTTCTT	TACTTCTTCCTGCCGGGATTTAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCTGCGCTTCCCCAG	CAGTACCCCCGCTTGTCTCCAGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTTTTGCAAAGTGAG	TTGAGCAACTTAATGTCCCGAAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCTGCGCTTCCCCAG	CAGTACCCCCGCTTGTCTCCAGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTTTTGCAAAGTGAG	TTGAGCAACTTAATGTCCCGAAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCGTAGCGCCGCGCA	GGTGGCTTCTAACTCAGCAACGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGAGGCCATCATGAA	TGGCTTGAAGCGGGCCAAGACCTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGCTCCGCGAGGACC	TGGAGTGCTGCCGCCGGCTGCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGAAGGTGCAGGAGA	GTATTTCGGCCGGAATAATTCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCCGGGTGATCCCGT	TGGGTACAGAGCTGTACGTTGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACAGCTGCCCGATGAT	GAGTTGTACCGGCTGATTGCCCTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGTGATAGGCCATAT	TTCATAGCAGCCTTTAGCTCTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGGTGAAAGGAGCGA	CAAGCAAGCAGGCAGACAGAAGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACACGGTTAGGGGAAC	GGTTAGGGGAACGGTTTGCCTAAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCACCCCAACCCCTC	CGGGAGTAAAACCTACGGAGGGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGTCAATACAACAGA	ATAAAATTCGCCGAGATTCGGCAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTTTTCGGGCAGAGT	TAACCACTCTGCCCAAAGCCCCGGATGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCACCCCAACCCCTC	CGGGAGTAAAACCTACGGAGGGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGTCAATACAACAGA	ATAAAATTCGCCGAGATTCGGCAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGACTATCCTATCCC	GAAGAATGGAAATACAAAGAATGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGAGATCGCTGGGGC	AGCATTAGAGGTGTGAAGACTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTTTTTGTATCCACT	TGTGATCCTAGTTCGTGTAGAGCCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTCTTGTCACCCCCT	TGCTTTTAGTGCTGGTTTAGTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACGGCTAAAGAAAGCC	TTAGCGCTGCTGATCTTTTTCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCGACAAGAAAAACA	CTGTCGAGCTAGTCCTCCCCGAGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCCAACGAACCAACG	AACATGAACTAGAGTGTTAGTTGTTTCAATCCCTCG
TAGGTAGGCTGGAAACACGCTTGTAATATC	CTTGTATCAAGCCGAAAAAAATGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCGCTGTAGTTTCTA	CATGTAGAAACTCACCCGCGCCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTCCACTCGTCACCC	AGAGCGGCATCCAGAATCGGCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTAATGATCCGCTGG	ACGGTGAAGTTTTGATTGCGGGGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCTCACTAAACGACA	AGTGTAGTATAATCAAAGTAGCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACTACTATGGACCGTG	CGAAGCATGCGGCGAGGAAGCGTTTCAATCCCTCG
TAGGTAGGCTGGAAACCATGCCGACCCGGA	TCAGGACCTGGCCGGTTAAGAGTTTCAATCCCTCG
TAGGTAGGCTGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010424.1\|WP_012301814.1\|1904573_1905968_+\|ISNCY-like-element-ISCde2-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010424.1\|WP_012302887.1\|1918803_1919778_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_010424.1\|WP_012302884.1\|1915322_1915859_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_010424.1\|WP_012302877.1\|1892059_1892485_-\|hypothetical-protein	csm2gr11	mkCas0136_csm2gr11_CAS-III-A	unknown
NC_010424.1\|WP_012302883.1\|1914302_1915298_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_010424.1\|WP_041571315.1\|1919755_1921243_-\|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	unknown
NC_010424.1\|WP_166485172.1\|1898049_1898211_-\|hypothetical-protein	unknown	unknown	unknown
NC_010424.1\|WP_012302875.1\|1890322_1891222_-\|hypothetical-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	gnl\|CDD\|224256
NC_010424.1\|WP_041570921.1\|1896736_1897984_-\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	gnl\|CDD\|312526
NC_010424.1\|WP_012302889.1\|1921460_1922255_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_010424.1\|WP_012302890.1\|1922302_1923274_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	gnl\|CDD\|213662
NC_010424.1\|WP_166485171.1\|1894460_1896707_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	unknown
NC_010424.1\|WP_012302882.1\|1914036_1914300_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_010424.1\|WP_012302879.1\|1893724_1894447_-\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274211
NC_010424.1\|WP_012302878.1\|1892481_1893753_-\|CRISPR-associated-RAMP-Csx10-family-protein	csx10gr5	cd09700_csx10gr5_CAS-III-D	gnl\|CDD\|187831
NC_010424.1\|WP_012301814.1\|1900968_1902363_-\|ISNCY-like-element-ISCde2-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010424.1\|WP_041570922.1\|1918057_1918807_-\|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl\|CDD\|273860
NC_010424.1\|WP_012302876.1\|1891214_1892063_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274211
NC_010424.1\|WP_012301814.1\|1912285_1913680_+\|ISNCY-like-element-ISCde2-family-transposase	unknown	unknown	gnl\|CDD\|377531
NC_010424.1\|WP_012302885.1\|1915913_1918103_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|273707

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010424.1\|WP_012302887.1\|1918803_1919778_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	7.5e-78	256.5	0.0
NC_010424.1\|WP_012302884.1\|1915322_1915859_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	2.7e-47	155.7	0.1
NC_010424.1\|WP_012302877.1\|1892059_1892485_-\|hypothetical-protein	csm2gr11	mkCas0136_csm2gr11_CAS-III-A	1e-83	273.3	5.0
NC_010424.1\|WP_012302883.1\|1914302_1915298_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	6.5e-131	431.0	0.1
NC_010424.1\|WP_041571315.1\|1919755_1921243_-\|hypothetical-protein	cas8b1	mkCas0195_cas8b1_CAS-I-B	2e-212	700.9	0.0
NC_010424.1\|WP_012302875.1\|1890322_1891222_-\|hypothetical-protein	csm3gr7	COG1337_csm3gr7_CAS-III-D	1.8e-30	100.9	0.0
NC_010424.1\|WP_012302889.1\|1921460_1922255_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	4.5e-33	109.5	0.0
NC_010424.1\|WP_012302890.1\|1922302_1923274_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	cmr6gr7	COG1604_cmr6gr7_CAS-III-B	7.5e-48	158.1	0.0
NC_010424.1\|WP_166485171.1\|1894460_1896707_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	2e-48	160.1	0.0
NC_010424.1\|WP_012302882.1\|1914036_1914300_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.7e-26	87.0	0.4
NC_010424.1\|WP_012302879.1\|1893724_1894447_-\|hypothetical-protein	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	6.8e-22	73.4	0.0
NC_010424.1\|WP_012302878.1\|1892481_1893753_-\|CRISPR-associated-RAMP-Csx10-family-protein	csx10gr5	cd09700_csx10gr5_CAS-III-D	1.8e-41	137.5	0.0
NC_010424.1\|WP_041570922.1\|1918057_1918807_-\|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	2.1e-21	71.3	0.2
NC_010424.1\|WP_012302876.1\|1891214_1892063_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09683_csm3gr7_CAS-III-A:CAS-III-D	9.4e-50	163.7	0.0
NC_010424.1\|WP_041570921.1\|1896736_1897984_-\|DUF1887-family-protein	csx1	pfam09002_csx1_CAS-III	1.3e-34	114.2	0.0
NC_010424.1\|WP_012302885.1\|1915913_1918103_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	9.9e-70	230.3	0.0

Protein	Function_ID	Function_description	E-value
NC_010424.1\|WP_012302887.1\|1918803_1919778_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	8.63666e-85
NC_010424.1\|WP_012302884.1\|1915322_1915859_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.01639e-64
NC_010424.1\|WP_012301814.1\|1904573_1905968_+\|ISNCY-like-element-ISCde2-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.10735e-16
NC_010424.1\|WP_012302883.1\|1914302_1915298_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	8.57039e-162
NC_010424.1\|WP_041570921.1\|1896736_1897984_-\|DUF1887-family-protein	gnl\|CDD\|312526	pfam09002, DUF1887, Domain of unknown function (DUF1887). This domain is found in a set of hypothetical bacterial proteins.	1.0207e-22
NC_010424.1\|WP_012302889.1\|1921460_1922255_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	5.40338e-40
NC_010424.1\|WP_012302890.1\|1922302_1923274_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr6	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	2.13142e-49
NC_010424.1\|WP_012302875.1\|1890322_1891222_-\|hypothetical-protein	gnl\|CDD\|224256	COG1337, COG1337, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.18173e-26
NC_010424.1\|WP_012302882.1\|1914036_1914300_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	9.02092e-27
NC_010424.1\|WP_012302879.1\|1893724_1894447_-\|hypothetical-protein	gnl\|CDD\|274211	TIGR02581, putative_CRISPR-associated_protein, CRISPR-associated RAMP protein, SSO1426 family. Members of this CRISPR-associated (cas) gene family are found in the RAMP-2 subtype of CRISPR/cas locus and designated TM1809 family.	2.33365e-20
NC_010424.1\|WP_012302878.1\|1892481_1893753_-\|CRISPR-associated-RAMP-Csx10-family-protein	gnl\|CDD\|187831	cd09700, Csx10, CRISPR/Cas system-associated RAMP superfamily protein Csx10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Duplicated RAMP domains.	3.7617e-36
NC_010424.1\|WP_012301814.1\|1900968_1902363_-\|ISNCY-like-element-ISCde2-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.10735e-16
NC_010424.1\|WP_041570922.1\|1918057_1918807_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	2.50375e-17
NC_010424.1\|WP_012302876.1\|1891214_1892063_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|274211	TIGR02581, putative_CRISPR-associated_protein, CRISPR-associated RAMP protein, SSO1426 family. Members of this CRISPR-associated (cas) gene family are found in the RAMP-2 subtype of CRISPR/cas locus and designated TM1809 family.	6.24835e-50
NC_010424.1\|WP_012301814.1\|1912285_1913680_+\|ISNCY-like-element-ISCde2-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.10735e-16
NC_010424.1\|WP_012302885.1\|1915913_1918103_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	1.82402e-65

>NC_010424.1|WP_012301814.1|1904573_1905968_+|ISNCY-like-element-ISCde2-family-transposase
MLCLRQEESRQVSFLDYILPPEVLELPEDLAKLDAWLDDERFFEPFQDKYHRCLGRPSVPAETYLRMTALKHQYRLSDRQVCALVKDRISWRRFCRIPWNKPVPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPTDSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIKKRVLAIAKVLKRRTGESIQEVRRITGEMADIAEKTLQDARNVVQHLHQQARHLAGTARDEKRRLAARLEKILDLGEQIVSQARQVNAGQLNLPERVVSLSDPEARPIRRGKAHKETEFGYKVRLTESTERLVTEYDVMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGKRSHSRTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYNLNRIAKLI
>NC_010424.1|WP_012301814.1|1900968_1902363_-|ISNCY-like-element-ISCde2-family-transposase
MLCLRQEESRQVSFLDYILPPEVLELPEDLAKLDAWLDDERFFEPFQDKYHRCLGRPSVPAETYLRMTALKHQYRLSDRQVCALVKDRISWRRFCRIPWNKPVPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPTDSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIKKRVLAIAKVLKRRTGESIQEVRRITGEMADIAEKTLQDARNVVQHLHQQARHLAGTARDEKRRLAARLEKILDLGEQIVSQARQVNAGQLNLPERVVSLSDPEARPIRRGKAHKETEFGYKVRLTESTERLVTEYDVMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGKRSHSRTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYNLNRIAKLI
>NC_010424.1|WP_166485172.1|1898049_1898211_-|hypothetical-protein
MAVWFSQAVVVLWGRPMVHLTYPPLLGWGVSGVVLTFWVLRNMTLSVFEVLHL
>NC_010424.1|WP_041570921.1|1896736_1897984_-|DUF1887-family-protein
MAVAKAEAKSKVMVVLVSEQRMQNLIPCFQKDSTITNVHLVRSSDADNPDSRLGKAWSDTKAVLEERKLEVVDADVAVDAYDPASTEKVVKRLLDKLAHHKRTAVVNFTGGTKCMAVGAYLAARQAGVATLYVDTARRQLLLRAHDDQPCAVPFELDGLSIDTYFRAYGLNPRVNDGQILERYAKIMTVIRRYWPGSAATLDMWGKHFDQKSSSRRKRRLSGAVKVSWRPSDEVECELWAVLEEARLFCQEGEEFFASAEARQFLTGRWLECLTYQLLRESNCFDEVAFDLHLTEKNTALAAGPGEASPASTTAPTGGAANQLDVVTIEQGNLAVFECKSGNLRGQDTLNKLQALWTRLGTFARLFLVTSCPLDEISGDFRYRARAYRLARIITREDLEDAGKLKDAVLKAVGGS
>NC_010424.1|WP_166485171.1|1894460_1896707_-|hypothetical-protein
MFEWRDGFTGRRYGFTKEQQDAARRLVAGLLEAKLKKEVGDDLRALADAAAAFWARDYYRLVFPLAFGREVVDGGVRAVFLDDPGDRVDQTAVFRRAPLDGAARPPLLPAGGRAPAEYLLADVVLVRAALANIYCRQRGVDPGLLHVLRLACFTGPLAAELAASGFDLPEEVRRLVDFLEGDGEPPAELDAEDLRRLWEAGAVAAEEAMDIAPASFAVTVVVGAVQRVKQYVFETPGLNEIRGGSEILSDVTERLAVDVATELGAEVVLRAAGSHLEFLVPDAETGAAWEARLRREFVAATGGVLVAAAAETLPVRDLLGDYYRAMGRVYQRLEAARNQTRPLYPETLPFEERCAICGQRAAEGWYQPPEGDAEPICRVCLIKREWGRDARRDKTRELEEQLRGGGRALWGLGADAGLPQSLDDLIVGHPRRRLVAVVYGDGNNFGAVVQQLKNIAVARQWTCRVEAVTWSATALALAEAVRVSVPAPHAAAKEAQRKPSLPFQVLALGGEDIGLFAWGPVGLRFAERFVALTDREFTPAPGHDGARICFSLGVLVADAKAAVARTVAFSEGELLKWAKRAARNAGYRDGGTIAFLVVPTADQIPGDLDDFQQTMYYREGATFPVCLTLRPVTAAELGFLLDRAARLREAGFVGALGRMAAAFVRGEPRVAVLYYLYQKARERKGRDDGGFTALLEDTRERPPTLADLDFAGRVLGTRRPFGGEPVAGGRETYFAPLVDLAELVKVLE
>NC_010424.1|WP_012302879.1|1893724_1894447_-|hypothetical-protein
MNEVWRLTVEVRPLGMLHVAGPGRPRPLVDRTVAVDARGRPYLPASSVRGRVRAHLERLLRAYGLPVCTPPRPQHMCPHAGLAGTSDGYCLACRLFGSPWRAGAVTVNDFYPVGVFEATEAEWERNMVVRTGIGISRKLGTVREERLFFTEAVPGDDALRFRGTLEARAERAVVGWLVGTLGLVTHLGGQKGRGLGRVELDVSGVAVWTPGRGWEEMTEHEVESFCREVVSLALAGTVAG
>NC_010424.1|WP_012302878.1|1892481_1893753_-|CRISPR-associated-RAMP-Csx10-family-protein
MRWQVRLRVEGPLLVGKGTPTQNVLLGRDYIPGSVWRGALAEAVLRAAGALAPGAAGQAAELPPEFGLAFGPETRFGFLYPVPGEKWDGFPLPLTVRSCKARPGFACGVHGRGKGGGHGVLDMLLVTLRRHLGLAEELSPGCPECRERLDRFRGVAARMPLSAGQDTAYETVKVRRQLLVRVGLDRRTETAADGVLYALDAQVPGRDRALYFTGTWRGTPEALHALHQLLDGACPRAGDGWAIRVGTARARGLGRAVLEITEAQAVFLPPLEERLEAFQPRQGDGQPADPDHLCFALLLKAPLLVRDAAGVACGLPAAAVLAPYVTSLPVGLEFLETVSVLEWESSDGWAMAWGLPKPVQAALAPGSVLAYRAPARERRAVLAFLEEVENGGLGERTAEGWGEVVACDPLHLKCDAGKEAVKQ
>NC_010424.1|WP_012302877.1|1892059_1892485_-|hypothetical-protein
MKSVQQAVDALNEQLVARAEKIVQALGPRDENQQDVSKSQLARAIDVARAAQSAAVFQNWLAYQAGRKETGAFWTTQVGGRPLIRWVEGTLGWIEKEIDAQQLGDAAVRRQAVTEALVRFLGFLRRAFVGAKFVLERGKER
>NC_010424.1|WP_012302876.1|1891214_1892063_-|CRISPR-associated-RAMP-protein
MRAFAAAGFWDTFRHRLVVTGELVCDTALRVGAGTEALLPSASDLPVVTTGGRPYIPGSSLRGVVRSQVERLVRTLEREPRNGRGACDPLEDTGWCIPRKEMQDLRRKVRERDEGRDDWLAQQVWERSCRVCRIFGSPWLASRVRFSDLFPLGETHPEVRDGVAIDREREAVKNKYDFEVVPAGTRFALEIMAENLGTPAERSLLWLGLQELAEGGVPVGGFKGRGLGRVHLEHLRVRYVDATDREALQAYLVRRDWREAGTEERQEWLNAFFAECGGEAGA
>NC_010424.1|WP_012302875.1|1890322_1891222_-|hypothetical-protein
MHSRFYNEAVFTLTVSPRTPLLIKAGGEGAAAMDPTVPDMNFVRTRRPDGREVLFIPGASFRGVLRAHAERLLRSVRPQAACDPLAHRKKRETYDLEKACTFDDKSSGPEAYRGACHACRLFGATGLASRVRVSDFYPEGALATDTRYGVAIDRVTGAVAHGPFELEIVTEGSFAGELTLRNFTLGQFGLLGAALLDVADGLVPLGFGKSRGLGRVAVEITRLAVRTLRDPESHILGVGALCDEAARRAFAVPGADRERLLVAGAHTSRARGLFVLEAAGETARRWLEAAAPRWVGELA
>NC_010424.1|WP_012301814.1|1912285_1913680_+|ISNCY-like-element-ISCde2-family-transposase
MLCLRQEESRQVSFLDYILPPEVLELPEDLAKLDAWLDDERFFEPFQDKYHRCLGRPSVPAETYLRMTALKHQYRLSDRQVCALVKDRISWRRFCRIPWNKPVPHPSSLTKIRQRLDADGSDHMAALNAHLVRKAQEEKLLKSRNKVRVDTTAIEANIHHPTDSGLIADSVRVVTRLAKKIQAVADNTSVAIRDRTRSIKKRVLAIAKVLKRRTGESIQEVRRITGEMADIAEKTLQDARNVVQHLHQQARHLAGTARDEKRRLAARLEKILDLGEQIVSQARQVNAGQLNLPERVVSLSDPEARPIRRGKAHKETEFGYKVRLTESTERLVTEYDVMMGNPPDHQLLIPGIAEHIHRTGRVPEGTATDRGFWNAGNESALQALGIRKISLPYKGKRSHSRTGHERQSWFRRLQRWRAGQEGTISVLKRRYGLKRTLYRGLAGCRRWVGGAVWGYNLNRIAKLI
>NC_010424.1|WP_012302882.1|1914036_1914300_-|CRISPR-associated-endonuclease-Cas2
MYVILVYDVNVARVGKVLKRARRYLTWVQNSVLEGELTEASYRALKSDLARVIDTREDSVLFYVLGARKYTRRELMGVQKGGEEWIY
>NC_010424.1|WP_012302883.1|1914302_1915298_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MQKTLYLFASGRLRRKDNTVCLESENATKYFPVASLRDIFVFGELDLNKKLFEFMEEQEIVLHFFGYYGNYVGSFYPREHYNSGYVILRQAEHYLDGARRLELARRFVEGALANILQILRYYQNRGKELAGSIESISRLLEGSLPACGRVEELMAVEGNAREYYYESFNVILDKSPFTMPGRSKRPPTDPLNALISFGNSLIYAKILTEIYKTHLDPRIGYLHSTNFRRFTLNLDLAEIFKPVLADRVLFHLLGKKMLDLKDFEQQGGAYLLRERGRRLYVETLEEKLQSTFHHRRLRRNVSYQTLLRLELYKIQKHLMGEQPYKPFVSRW
>NC_010424.1|WP_012302884.1|1915322_1915859_-|CRISPR-associated-protein-Cas4
MGIDAKFQEAAPFHLQPVVGSMVNAYIICPRKAWLMSRQICPDEDNTYLHLGRLIQNQSYGRERKEVRLEHLCLDLIRREEETLVVAEVKKSSRAREAARMQLAFYLYELEQMGVEAEGELLFPEERRRERMVLDPELARQVENLKARVRALILAPSAPLPTRIRFCARCAYAEFCWA
>NC_010424.1|WP_012302885.1|1915913_1918103_-|CRISPR-associated-helicase/endonuclease-Cas3
MDELVLLGKPDVPLLAHLKEVTEQGKILARHLGLPPALEKRALLACAFHDVGKATRSFQDYMRGKRGKGYPHALASLPFALAAELYTLQASPLAAAAVLSHHSPLGPEVYRGYRAPDYVDEKNLAAFLEDVVAFLQGLGWEGNLPAVEKLLKLATSDGTPATLLDNSRFRFGEELISLRGLFKELPPIDFADIKAVLQLADWVASSGKAQAGDLFLHQGRKLVLTSIKEKSIQLRPFQKKAGEMKRERLWLRAPTGTGKTEALLLWAGDTERLLYLLPTQATANAMWKRLKKIYGEENVGLAHGRAGYILRKELEEDPLDVRLWASVFARPVVVGTLDQYLMAHLQGRHWEIRRSLARRATVVLDEIHSYDPYTLGLLQEALAQEPPARLALASATLPEFLPELLGQGPLLEAEEPLWQRKRHELRLFVEPVASALEEALSFVRQGKTVLVIANTVKQAQEIYQALQEDGDYQVHLLHSRFAFRDRWKKEEQLGKTIPGTILVATQIVEVSLDISYDVLFTEVAPIDALVQRLGRVNRRGITPEGTTAPPAPAFIFLEWDKGSEKIYGQEILTWSRDILNDMPQHPTDGEWVQATNRLYEVQASSPSYQEDLREGQQTLREVQRISGCYTIDLSDEEMQKKFTTRKGQLSVEVLPQALKDEAFALRERGEHWRLVELLVPVPVYWLPAFSHWFSPLSDLGVFLTDLPYSEEMGLMPPGEGEAPPGMEIY
>NC_010424.1|WP_041570922.1|1918057_1918807_-|CRISPR-associated-protein-Cas5
MNVLWVKVTAPLASFRRPLDHNYQRTLPLPPPTTLFGLAGAARGLAEEELWQEASPLRDLLVATLALQKPGLARDMWTVMKIKNNKLAERSPYFREILFNARFMILYGGPEELLAELQQAFLDPTYPLSLGREDELIVVEELGRGETCPGAPLFSGTVIPGDLQGLRFKWVPRPGIAFEPPAVETMPLAFEVDKRGIRYPLNPRPFTFLPYDLEVELEGYQDALTIEPLEGRSFTWMNWSSWESRTSLF
>NC_010424.1|WP_012302887.1|1918803_1919778_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MNNLQQSKAIALGYLMKVSAGNINASHTEGNVMVAKKVTLPDGSSVPYFSGQAKRRMLRDRLEDLGFTLSEASALVSGQEVTPPVRPWEFVDEDLFGYLDPSGNRRRTSPVRVSAAVGLFSFQGDRDLGTRSFERFGQDMAAGGNMFETELYANMFKGNMLVELDRAGIFSDQEVGKNNKEIPEALEKIERNGRLFYVLPGEERQRRLQALLDALGLLWGGGRTARMLSDLSPRFFVYARLRVKHPVFLEALQARYLEGRYGLVPDPLRTALDKFKDFRQAVIFGLEAGFLGNEEEIRAELQNYGPVLSVHEAIAQAKEDIKKL
>NC_010424.1|WP_041571315.1|1919755_1921243_-|hypothetical-protein
MIQVQLDLRHSTGNFWIDNGLVYLVNELGQGTYPVDNILALVQERLLQKTGNVGQYFDEVTGELKNYDKVTWVYPTGFFIKVVDAPPKKKVNGKEYPLSPPHPRLEFLFSKTKKQCNICGAQASATDAKMWMFPFIVAPDKFGSFYSRGKRGINLCPRCAVAGTAGYLTWLWVAQGRTALHFFLFHSDLAEISRLQKEVIQPLALSGSRGGNIVLPFYGPYLHETTMALLLKLFAHVQSSDQIPEEGRMLLASLLGADETLPPAPLTLYAITGNPGQAFNMQLFREFSRLHALYRLYQDWLEVVPAENPQQTLINVFRQFQVREGNQYNTLWREKISWAVLEFDDPLPSVEAFLFEARAKEKNLPPLFQGTEAVLSYYAKEVLHVDENLLKVLKGFGYTLGTEAQKSNEMGLLYALRNAKNLEEFLRVLNDIQFRLEITVPERLVEIGQGERIAGSPWLRVKTLLSIYAMNSYLRAARGSRTEEGGNVYEQPATE
>NC_010424.1|WP_012302889.1|1921460_1922255_-|CRISPR-associated-endoribonuclease-Cas6
MQLTIFFSAPGPVAIPVQYGHLLQGLIYRRMDNPVLRSYLHEHGFALEKRRFKLFTFSRLMGQAVTYDQAAGRLVLTPPLRLVICSPIPFILQELGTGFLRQGRVRLGDAHLEVKKMATAAPWVTRETLQVRMLSPLVVYSTLSGVDGRNYTYYYSPFEPRFTELVASNLAKKHFLVYGQPARAEGFAIRPVRVEDRDLKVTYYKDTVIKGWMGEYELSGDLELLQLALDAGLGSKNSQGYGCCNLVEKASQVSSRYRRNSNIM
>NC_010424.1|WP_012302890.1|1922302_1923274_-|type-III-B-CRISPR-module-RAMP-protein-Cmr6
MSTRRTCLVSARKTPTTNAGLWLDKFIRNQAREDKDSRHDLVREVSDIPVPEEYSRWFERWRRVLQDYGAACRVAEVLGRIAVGLGEESVLETSVALHHTYGVPYIPGSALKGLAASFARQYLGDDWQANAGAYKTVFGDTDTAGYVIFFDALPLPGSRLLYPDVITVHHEGYYQKGDKPPADWDSPNPVPFLSATGKYLVALAGPDAWVKAAFEILQYALLNLGVGAKTSSGYGRLRLESVPPITGVEDRKVDQLINQIRALRTSEVAGRIQAFYEQWWKLDVSPEHKRRIAEAIVAKVKEAGREKQSLDKDWYRELLESLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010424_6	6.11\|1906777\|35\|NC_010424\|CRISPRCasFinder,CRT	1906777-1906811	35	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	806715-806749	6	0.829
NC_010424_6	6.101\|1906791\|35\|NC_010424\|PILER-CR	1906791-1906825	35	CP011076	Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence	806715-806749	6	0.829
NC_010424_4	4.17\|1899400\|37\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1899400-1899436	37	NC_012849	Ralstonia pickettii 12D plasmid pRp12D02, complete sequence	269654-269690	8	0.784
NC_010424_2	2.44\|1358736\|34\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1358736-1358769	34	NC_015169	Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence	233835-233868	9	0.735
NC_010424_4	4.18\|1899467\|37\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1899467-1899503	37	MH593833	Siphoviridae sp. isolate ctbb6, complete genome	41072-41108	9	0.757
NC_010424_2	2.11\|1356303\|36\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1356303-1356338	36	MH509446	Gordonia phage DelRio, complete genome	27905-27940	10	0.722
NC_010424_2	2.11\|1356303\|36\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1356303-1356338	36	MK359319	Gordonia phage Parada, complete genome	26897-26932	10	0.722
NC_010424_2	2.11\|1356303\|36\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1356303-1356338	36	MK376958	Gordonia phage Brylie, complete genome	26897-26932	10	0.722
NC_010424_2	2.11\|1356303\|36\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1356303-1356338	36	MH399781	Gordonia phage Nadeem, complete genome	26897-26932	10	0.722
NC_010424_2	2.11\|1356303\|36\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1356303-1356338	36	MK279893	Gordonia phage WheatThin, complete genome	26897-26932	10	0.722
NC_010424_2	2.11\|1356303\|36\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1356303-1356338	36	NC_031247	Gordonia phage BetterKatz, complete genome	27159-27194	10	0.722
NC_010424_2	2.11\|1356303\|36\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1356303-1356338	36	MK305885	Gordonia phage Mulch, complete genome	26897-26932	10	0.722
NC_010424_2	2.11\|1356303\|36\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1356303-1356338	36	NZ_CP011515	Mitsuaria sp. 7 plasmid, complete sequence	123655-123690	10	0.722
NC_010424_2	2.44\|1358736\|34\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1358736-1358769	34	NC_009339	Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence	188821-188854	10	0.706
NC_010424_2	2.46\|1358883\|37\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1358883-1358919	37	NZ_CP039925	Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence	348521-348557	10	0.73
NC_010424_4	4.18\|1899467\|37\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1899467-1899503	37	DQ372923	Bacteriophage mu1/6, complete genome	13573-13609	10	0.73
NC_010424_4	4.18\|1899467\|37\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1899467-1899503	37	NC_007967	Streptomyces phage mu1/6, complete genome	13573-13609	10	0.73
NC_010424_2	2.11\|1356303\|36\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1356303-1356338	36	MK967392	Gordonia phage GrandSlam, complete genome	27434-27469	11	0.694
NC_010424_5	5.1\|1902555\|36\|NC_010424\|CRISPRCasFinder,CRT	1902555-1902590	36	NZ_CP041205	Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence	270193-270228	11	0.694
NC_010424_2	2.19\|1356889\|38\|NC_010424\|PILER-CR,CRISPRCasFinder,CRT	1356889-1356926	38	MT701590	Klebsiella phage Miami, complete genome	105999-106036	12	0.684

1. spacer 6.11|1906777|35|NC_010424|CRISPRCasFinder,CRT matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.829

ttggttccttgttctttgaaaacattaatttgagg	CRISPR spacer
ttggacatttgttctttgaaaacattaattgtagg	Protospacer
**** . .**********************  ***

2. spacer 6.101|1906791|35|NC_010424|PILER-CR matches to CP011076 (Brevibacillus laterosporus strain B9 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.829

ttggttccttgttctttgaaaacattaatttgagg	CRISPR spacer
ttggacatttgttctttgaaaacattaattgtagg	Protospacer
**** . .**********************  ***

3. spacer 4.17|1899400|37|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to NC_012849 (Ralstonia pickettii 12D plasmid pRp12D02, complete sequence) position: , mismatch: 8, identity: 0.784

cagggccag---gttggaatttgtccggcacgccgtaatc	CRISPR spacer
---agccggccaattggaatttgtccgtcacgccgtactc	Protospacer
   .***.*   .************** ********* **

4. spacer 2.44|1358736|34|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to NC_015169 (Deinococcus proteolyticus MRP plasmid pDEIPR01, complete sequence) position: , mismatch: 9, identity: 0.735

cgcaccgccttgtccccgacgacgtaatccttgg	CRISPR spacer
ggcaccgccttgtccccgccgatgtccagcgtgc	Protospacer
 ***************** ***.**    * **

5. spacer 4.18|1899467|37|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to MH593833 (Siphoviridae sp. isolate ctbb6, complete genome) position: , mismatch: 9, identity: 0.757

accacgt-cctcggcgcaggtggcggtggaagcggccc	CRISPR spacer
-ctactcaaatcggcgcaggtggcggtggaagtggcgg	Protospacer
 *.** .   **********************.***

6. spacer 2.11|1356303|36|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 10, identity: 0.722

ggtgccggggcaggtgtcggcgttcgtgtcagtacc	CRISPR spacer
caagccggggcaggtgtcggcggtcgtgtggatcga	Protospacer
 . ******************* ****** ..*

7. spacer 2.11|1356303|36|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to MK359319 (Gordonia phage Parada, complete genome) position: , mismatch: 10, identity: 0.722

ggtgccggggcaggtgtcggcgttcgtgtcagtacc	CRISPR spacer
caagccggggcaggtgtcggcggtcgtgtggatcga	Protospacer
 . ******************* ****** ..*

8. spacer 2.11|1356303|36|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to MK376958 (Gordonia phage Brylie, complete genome) position: , mismatch: 10, identity: 0.722

ggtgccggggcaggtgtcggcgttcgtgtcagtacc	CRISPR spacer
caagccggggcaggtgtcggcggtcgtgtggatcga	Protospacer
 . ******************* ****** ..*

9. spacer 2.11|1356303|36|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to MH399781 (Gordonia phage Nadeem, complete genome) position: , mismatch: 10, identity: 0.722

ggtgccggggcaggtgtcggcgttcgtgtcagtacc	CRISPR spacer
caagccggggcaggtgtcggcggtcgtgtggatcga	Protospacer
 . ******************* ****** ..*

10. spacer 2.11|1356303|36|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to MK279893 (Gordonia phage WheatThin, complete genome) position: , mismatch: 10, identity: 0.722

ggtgccggggcaggtgtcggcgttcgtgtcagtacc	CRISPR spacer
caagccggggcaggtgtcggcggtcgtgtggatcga	Protospacer
 . ******************* ****** ..*

11. spacer 2.11|1356303|36|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to NC_031247 (Gordonia phage BetterKatz, complete genome) position: , mismatch: 10, identity: 0.722

ggtgccggggcaggtgtcggcgttcgtgtcagtacc	CRISPR spacer
caagccggggcaggtgtcggcggtcgtgtggatcga	Protospacer
 . ******************* ****** ..*

12. spacer 2.11|1356303|36|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to MK305885 (Gordonia phage Mulch, complete genome) position: , mismatch: 10, identity: 0.722

ggtgccggggcaggtgtcggcgttcgtgtcagtacc	CRISPR spacer
caagccggggcaggtgtcggcggtcgtgtggatcga	Protospacer
 . ******************* ****** ..*

13. spacer 2.11|1356303|36|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011515 (Mitsuaria sp. 7 plasmid, complete sequence) position: , mismatch: 10, identity: 0.722

ggtgccggggcaggtgtcggcgttcgtgt----cagtacc	CRISPR spacer
cctgccggcgcaggtgtcggccttcgtgcgcgacaa----	Protospacer
  ****** ************ ******.    **.

14. spacer 2.44|1358736|34|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 10, identity: 0.706

cgcaccgccttgtccccgacgacgtaatccttgg	CRISPR spacer
cgcaccgcctggtccctgacgacgcggcgatggc	Protospacer
********** *****.*******....  * *

15. spacer 2.46|1358883|37|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039925 (Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence) position: , mismatch: 10, identity: 0.73

gcgccggcaatcgccggccttacttgcaggtgctggc	CRISPR spacer
cggacctcgttcgccggctttacctgcaggtgctgga	Protospacer
  * *  *. ********.****.************

16. spacer 4.18|1899467|37|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to DQ372923 (Bacteriophage mu1/6, complete genome) position: , mismatch: 10, identity: 0.73

accacgtcctcggcgcaggtggcggtggaagcggccc	CRISPR spacer
aacacgacctcggcgcgggtggcggtggcgatcgcga	Protospacer
* **** *********.*********** ... **

17. spacer 4.18|1899467|37|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to NC_007967 (Streptomyces phage mu1/6, complete genome) position: , mismatch: 10, identity: 0.73

accacgtcctcggcgcaggtggcggtggaagcggccc	CRISPR spacer
aacacgacctcggcgcgggtggcggtggcgatcgcga	Protospacer
* **** *********.*********** ... **

18. spacer 2.11|1356303|36|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 11, identity: 0.694

ggtgccggggcaggtgtcggcgttcgtgtcagtacc	CRISPR spacer
caagccgggccaggtgtcggcggtcgtgtggatcga	Protospacer
 . ****** ************ ****** ..*

19. spacer 5.1|1902555|36|NC_010424|CRISPRCasFinder,CRT matches to NZ_CP041205 (Rhizobium sp. NIBRBAC000502774 plasmid pMK-2, complete sequence) position: , mismatch: 11, identity: 0.694

tcgggaagagcagccgtcctcccgatcggtaaggga	CRISPR spacer
ccgggaagagcaggcgacctcccgatctctcgactg	Protospacer
.************ ** **********  * ..  .

20. spacer 2.19|1356889|38|NC_010424|PILER-CR,CRISPRCasFinder,CRT matches to MT701590 (Klebsiella phage Miami, complete genome) position: , mismatch: 12, identity: 0.684

ggatacaacccacaacttcgctcaatctcaaaaataaa	CRISPR spacer
atcgttgcttcacaacatcgctcaatctaaaaaataaa	Protospacer
.    .. ..****** *********** *********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43314 : 51339

Streptococcus_phage(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012301199.1\|43314_43980_+	dTMP kinase	M1PSC7	Streptococcus_phage	2.5e-37	45.3
WP_166485045.1\|43976_45002_+	DNA polymerase III subunit delta'	B2ZY37	Ralstonia_phage	4.4e-09	31.5
WP_012301201.1\|44970_45783_+	stage 0 sporulation family protein	NA	NA	NA	NA
WP_012301202.1\|45921_46770_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	7.4e-55	44.0
WP_012301203.1\|46819_47074_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	9.4e-22	63.4
WP_041570986.1\|47288_48833_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	2.7e-95	37.8
WP_012301205.1\|48834_49620_+	TatD family hydrolase	NA	NA	NA	NA
WP_012301206.1\|49660_50191_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	C7F482	Cyanophage	7.3e-08	34.0
WP_012301207.1\|50322_51339_+	DUF348 domain-containing protein	A0A218KDT1	Bacillus_phage	3.1e-15	50.5

DBSCAN-SWA_2

178429 : 234480

Escherichia_phage(16.67%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012301315.1\|178429_178963_+\|protease	hydrogenase maturation protease	NA	NA	NA	NA
WP_012301316.1\|179107_180679_+	4Fe-4S binding protein	NA	NA	NA	NA
WP_012301317.1\|181125_182457_-\|transposase	transposase	NA	NA	NA	NA
WP_083756543.1\|182694_183270_+	4Fe-4S dicluster domain-containing protein	A0A077SL61	Escherichia_phage	2.1e-13	39.3
WP_166485195.1\|183369_184515_+	polysulfide reductase NrfD	NA	NA	NA	NA
WP_012301319.1\|184966_185215_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_012301320.1\|185223_186678_+	aspartate ammonia-lyase	NA	NA	NA	NA
WP_012301321.1\|186716_188192_+	[FeFe] hydrogenase H-cluster radical SAM maturase HydG	NA	NA	NA	NA
WP_012301322.1\|188175_188562_+	hypothetical protein	NA	NA	NA	NA
WP_166485052.1\|188650_189943_+	[FeFe] hydrogenase H-cluster maturation GTPase HydF	NA	NA	NA	NA
WP_166485196.1\|190014_191061_+	[FeFe] hydrogenase H-cluster radical SAM maturase HydE	NA	NA	NA	NA
WP_012301325.1\|191156_191483_+	DsrE family protein	NA	NA	NA	NA
WP_012301326.1\|191998_193768_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_012301327.1\|193840_194161_+	hypothetical protein	NA	NA	NA	NA
WP_012301328.1\|194457_195312_-	putative beta-lysine N-acetyltransferase	NA	NA	NA	NA
WP_041570704.1\|195474_195663_+	hypothetical protein	NA	NA	NA	NA
WP_012301329.1\|195689_196952_+	lysine 2,3-aminomutase	NA	NA	NA	NA
WP_012301330.1\|196942_197674_-	HAD family hydrolase	NA	NA	NA	NA
WP_012301317.1\|198024_199356_+\|transposase	transposase	NA	NA	NA	NA
WP_012301331.1\|199651_200467_+	DUF2889 domain-containing protein	NA	NA	NA	NA
WP_012301332.1\|200595_203322_+	HAD-IC family P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	3.9e-65	28.2
WP_012301333.1\|203288_203609_-	YbjQ family protein	NA	NA	NA	NA
WP_012301334.1\|203605_203806_-	hypothetical protein	NA	NA	NA	NA
WP_166485197.1\|204055_204571_+	CtsR family transcriptional regulator	NA	NA	NA	NA
WP_012301336.1\|204567_205071_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_012301337.1\|205090_206236_+	protein arginine kinase	NA	NA	NA	NA
WP_012301338.1\|206296_208735_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	8.5e-128	34.9
WP_012301339.1\|208908_210246_+	DNA repair protein RadA	NA	NA	NA	NA
WP_012301340.1\|210268_211345_+	DNA integrity scanning protein DisA	NA	NA	NA	NA
WP_012301341.1\|211710_212187_+	CarD family transcriptional regulator	NA	NA	NA	NA
WP_012301342.1\|212312_213428_+	PIN/TRAM domain-containing protein	NA	NA	NA	NA
WP_012301343.1\|213420_214605_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_012301344.1\|214639_215356_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_012301345.1\|215303_216740_+\|tRNA	cysteine--tRNA ligase	NA	NA	NA	NA
WP_041570706.1\|217057_217810_+	FAD-dependent thymidylate synthase	B6EFA9	Stygiolobus_rod-shaped_virus	7.3e-30	37.5
WP_012301347.1\|217869_218625_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_012301348.1\|218621_219128_+	NYN domain-containing protein	NA	NA	NA	NA
WP_012301349.1\|219239_219890_+	RNA polymerase sporulation sigma factor SigH	NA	NA	NA	NA
WP_012301350.1\|221049_221271_+	hypothetical protein	NA	NA	NA	NA
WP_012301351.1\|221614_223201_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_083756544.1\|224207_224405_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_166485053.1\|224721_225639_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_166485054.1\|226516_226924_+	hypothetical protein	NA	NA	NA	NA
WP_012301354.1\|227091_230157_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_012301355.1\|230158_232849_+	site-specific DNA-methyltransferase	G8I4P9	Mycobacterium_phage	1.8e-25	27.5
WP_012301356.1\|232908_234480_-\|transposase	IS66-like element ISCde1 family transposase	S5VTD3	Leptospira_phage	1.6e-71	34.4

DBSCAN-SWA_3

693694 : 757994

Brazilian_cedratvirus(13.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012301782.1\|693694_694444_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_012301783.1\|694535_694883_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_166485086.1\|694943_695471_+	signal peptidase I	NA	NA	NA	NA
WP_012301785.1\|695492_696347_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_012301786.1\|696336_697140_+	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	1.0e-21	41.6
WP_012301787.1\|697186_698365_-	CapA family protein	NA	NA	NA	NA
WP_083756694.1\|698469_698892_+	YraN family protein	NA	NA	NA	NA
WP_012301789.1\|698904_699930_-	spore photoproduct lyase	NA	NA	NA	NA
WP_012301790.1\|700240_701419_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_041571109.1\|701465_702332_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_012301792.1\|702351_703359_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_012301793.1\|703346_704105_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	2.1e-16	28.8
WP_041570775.1\|704104_704821_+	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	1.2e-08	26.9
WP_083756576.1\|705216_705954_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_041570776.1\|705985_707212_+	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_166485087.1\|707237_709787_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	1.4e-11	23.5
WP_012301798.1\|709849_711862_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_166485088.1\|711884_712859_+	response regulator	Q6XM27	Feldmannia_irregularis_virus	9.6e-06	24.5
WP_166485212.1\|713025_713685_+	SagB/ThcOx family dehydrogenase	NA	NA	NA	NA
WP_166485089.1\|715747_717655_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.8e-07	81.6
WP_083756579.1\|718227_719289_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_012301804.1\|719445_720078_-	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_012301805.1\|720084_720264_-	hypothetical protein	NA	NA	NA	NA
WP_041570780.1\|720766_721543_-	DUF1670 domain-containing protein	NA	NA	NA	NA
WP_012301807.1\|721609_722389_-\|transposase	transposase	NA	NA	NA	NA
WP_012301808.1\|722805_723174_+	hypothetical protein	NA	NA	NA	NA
WP_012301809.1\|723177_724581_+	circadian clock protein KaiC	NA	NA	NA	NA
WP_012301810.1\|724591_726007_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.5e-15	31.7
WP_166485213.1\|726287_727301_+	HD domain-containing protein	NA	NA	NA	NA
WP_166485214.1\|727393_728131_+	STAS domain-containing protein	NA	NA	NA	NA
WP_012301813.1\|728120_728483_+	STAS domain-containing protein	NA	NA	NA	NA
WP_012301814.1\|728867_730262_+\|transposase	ISNCY-like element ISCde2 family transposase	NA	NA	NA	NA
WP_012301815.1\|730660_731287_+	SpoIIE family protein phosphatase	NA	NA	NA	NA
WP_166485215.1\|731335_732082_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.2e-18	34.6
WP_166485090.1\|732106_733813_+	bifunctional diguanylate cyclase/phosphodiesterase	NA	NA	NA	NA
WP_166485091.1\|734728_734899_+	hypothetical protein	NA	NA	NA	NA
WP_049752551.1\|734847_735177_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_041570783.1\|735198_736050_-	hypothetical protein	NA	NA	NA	NA
WP_041570784.1\|736283_736550_+	hypothetical protein	NA	NA	NA	NA
WP_012301820.1\|736621_736927_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012301357.1\|736923_737280_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	2.8e-19	46.9
WP_012301821.1\|737322_738894_+\|transposase	IS66-like element ISCde1 family transposase	S5VTD3	Leptospira_phage	2.5e-72	34.6
WP_041570786.1\|738953_739547_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_012301824.1\|740664_741519_-	DUF4263 domain-containing protein	NA	NA	NA	NA
WP_012301825.1\|741573_743211_-	DNA methylase	A0A2L1IZ21	Streptomyces_phage	6.3e-127	42.0
WP_012301826.1\|743623_744772_-	hypothetical protein	A0A1S5SAB0	Streptococcus_phage	2.7e-55	36.8
WP_049752552.1\|744857_745634_-	helix-turn-helix domain-containing protein	R9VW28	Paenibacillus_phage	1.8e-10	28.8
WP_049752553.1\|745741_746284_-	NERD domain-containing protein	NA	NA	NA	NA
WP_012301829.1\|746829_747357_+	copper amine oxidase domain-containing protein	NA	NA	NA	NA
WP_012301830.1\|747442_748825_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_012301831.1\|749187_750333_+\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	2.4e-88	45.5
WP_049752554.1\|750529_751183_+	MBL fold metallo-hydrolase	Q332B9	Clostridium_botulinum_C_phage	1.5e-26	45.0
WP_041570787.1\|751251_752091_+	hypothetical protein	NA	NA	NA	NA
WP_166485092.1\|752106_752247_+	hypothetical protein	NA	NA	NA	NA
WP_012301834.1\|752427_752868_+	hypothetical protein	NA	NA	NA	NA
WP_166485093.1\|753191_753662_+	hypothetical protein	NA	NA	NA	NA
WP_166485094.1\|753665_754238_+	hypothetical protein	NA	NA	NA	NA
WP_012301836.1\|754995_755358_+	hypothetical protein	NA	NA	NA	NA
WP_012301837.1\|755680_755887_+	hypothetical protein	NA	NA	NA	NA
WP_041570791.1\|756308_757994_+\|transposase	IS1634 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1531129 : 1587722

Moraxella_phage(22.22%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041570868.1\|1531129_1532512_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	NA	NA	NA	NA
WP_012302540.1\|1532735_1533539_-	histidinol-phosphatase	NA	NA	NA	NA
WP_012302541.1\|1533545_1534631_-	hypothetical protein	NA	NA	NA	NA
WP_012302542.1\|1534692_1534956_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_012302543.1\|1534978_1535290_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_012302544.1\|1535419_1536670_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_012302545.1\|1536822_1537497_-	DUF2344 domain-containing protein	NA	NA	NA	NA
WP_012302546.1\|1537483_1539343_-	TIGR03960 family B12-binding radical SAM protein	NA	NA	NA	NA
WP_012302547.1\|1539451_1540330_-	peptidase M50	NA	NA	NA	NA
WP_012302548.1\|1540380_1541106_-	M23 family metallopeptidase	A0A2I6UHM2	Bacillus_phage	3.2e-06	30.8
WP_012302549.1\|1541194_1541992_-	methyltransferase domain-containing protein	A0A1X9I6N4	Streptococcus_phage	3.8e-08	35.3
WP_012302550.1\|1542018_1543185_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_041570869.1\|1543243_1543516_-	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_012302552.1\|1543538_1544339_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_012302553.1\|1544363_1544750_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_012302554.1\|1544863_1546831_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_012302555.1\|1546845_1547340_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_012302556.1\|1547346_1548171_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_012302557.1\|1548172_1549204_-	rod shape-determining protein	NA	NA	NA	NA
WP_041571244.1\|1549229_1549889_-	JAB domain-containing protein	NA	NA	NA	NA
WP_012302559.1\|1549928_1550540_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_012302560.1\|1550544_1550790_-	DUF4321 domain-containing protein	NA	NA	NA	NA
WP_012302561.1\|1550843_1551317_-	RidA family protein	M1IDR7	Acanthocystis_turfacea_Chlorella_virus	9.6e-20	35.1
WP_049752658.1\|1551496_1552447_-	sodium:calcium antiporter	NA	NA	NA	NA
WP_012302563.1\|1552802_1554080_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_012302564.1\|1554214_1556860_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.1e-168	41.3
WP_012302565.1\|1557021_1558020_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_049752587.1\|1558081_1558420_-	hypothetical protein	NA	NA	NA	NA
WP_012302567.1\|1558568_1560962_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.9e-180	45.5
WP_012302568.1\|1561199_1562891_-\|protease	ATP-dependent protease LonB	A0A0R6PGP8	Moraxella_phage	8.0e-16	33.8
WP_012302569.1\|1563032_1564286_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	9.7e-144	62.1
WP_012302570.1\|1564301_1564898_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.5e-57	55.8
WP_012302571.1\|1564966_1566283_-	trigger factor	NA	NA	NA	NA
WP_012302572.1\|1566531_1567392_+\|tRNA	tRNA (adenine-N1)-methyltransferase	NA	NA	NA	NA
WP_041571248.1\|1567538_1568225_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_012302574.1\|1568299_1568641_-	hypothetical protein	NA	NA	NA	NA
WP_166485146.1\|1568662_1568800_-	hypothetical protein	NA	NA	NA	NA
WP_012302575.1\|1568942_1569386_-	hypothetical protein	NA	NA	NA	NA
WP_083756702.1\|1570824_1571163_-	gas vesicle protein	NA	NA	NA	NA
WP_012302577.1\|1571171_1572278_-	GvpL/GvpF family gas vesicle protein	NA	NA	NA	NA
WP_166485239.1\|1572282_1572591_-	gas vesicle protein K	NA	NA	NA	NA
WP_012302579.1\|1572610_1573633_-	hypothetical protein	NA	NA	NA	NA
WP_012302580.1\|1573649_1574030_-	gas vesicle protein	NA	NA	NA	NA
WP_012302581.1\|1574182_1574428_-	gas vesicle protein GvpG	NA	NA	NA	NA
WP_083756626.1\|1574427_1575219_-	GvpL/GvpF family gas vesicle protein	NA	NA	NA	NA
WP_049752589.1\|1575229_1577440_-	CDC48 family AAA ATPase	G9E6G3	Micromonas_pusilla_virus	1.0e-47	42.2
WP_012302585.1\|1577948_1578503_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_049752660.1\|1578579_1579467_-	gas vesicle protein GvpN	NA	NA	NA	NA
WP_012302587.1\|1579556_1579838_-	hypothetical protein	NA	NA	NA	NA
WP_166485147.1\|1579964_1580264_-	hypothetical protein	NA	NA	NA	NA
WP_012302589.1\|1580383_1580611_-	gas vesicle structural protein GvpA	NA	NA	NA	NA
WP_012302590.1\|1580725_1580956_-	gas vesicle structural protein GvpA	NA	NA	NA	NA
WP_012302049.1\|1582046_1583375_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_166485148.1\|1584013_1584205_+	hypothetical protein	NA	NA	NA	NA
WP_012301317.1\|1584593_1585925_-\|transposase	transposase	NA	NA	NA	NA
WP_012301317.1\|1586390_1587722_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1717670 : 1726957

Synechococcus_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012302712.1\|1717670_1719212_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	4.2e-72	48.9
WP_012302713.1\|1719239_1719884_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.4e-29	40.2
WP_012302714.1\|1720000_1721044_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F5C9	Synechococcus_phage	3.8e-69	44.6
WP_012302715.1\|1721104_1722514_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	5.4e-58	33.3
WP_041570895.1\|1722521_1723232_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	6.7e-41	39.9
WP_012302717.1\|1723271_1724570_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	4.2e-17	33.7
WP_049752598.1\|1724813_1726382_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.0e-20	32.0
WP_012302719.1\|1726384_1726957_-	hypoxanthine phosphoribosyltransferase	A0A1V0SEQ1	Hokovirus	3.5e-08	29.4

DBSCAN-SWA_6

1798450 : 1832393

Clostridium_botulinum_C_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_166485168.1\|1798450_1799197_+\|transposase	transposase	NA	NA	NA	NA
WP_012302788.1\|1799671_1799950_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_012302789.1\|1799953_1800397_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_012302790.1\|1800518_1801187_+\|transposase	IS607 family transposase	Q331V0	Clostridium_botulinum_C_phage	1.2e-44	47.9
WP_041570908.1\|1801131_1802565_+\|transposase	transposase	NA	NA	NA	NA
WP_012302791.1\|1803415_1803919_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_012302792.1\|1803923_1804172_-	hypothetical protein	NA	NA	NA	NA
WP_012302793.1\|1804590_1806312_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_012302794.1\|1806770_1808582_-	transglycosylase SLT domain-containing protein	A0A0H3V0Q1	Geobacillus_virus	1.4e-21	42.6
WP_041570909.1\|1808797_1809388_+	hypothetical protein	NA	NA	NA	NA
WP_012302796.1\|1809401_1810046_+	hypothetical protein	NA	NA	NA	NA
WP_012302797.1\|1810098_1810992_-	DUF368 domain-containing protein	NA	NA	NA	NA
WP_012302798.1\|1811199_1811985_-	phosphotransferase domain-containing protein	NA	NA	NA	NA
WP_012302799.1\|1812107_1812698_+	nitroreductase family protein	NA	NA	NA	NA
WP_012302800.1\|1812694_1813219_+	hypothetical protein	NA	NA	NA	NA
WP_012302801.1\|1813429_1814545_+	radical SAM protein	NA	NA	NA	NA
WP_166485169.1\|1814722_1815616_-	response regulator	NA	NA	NA	NA
WP_012302803.1\|1815636_1816335_-	hypothetical protein	NA	NA	NA	NA
WP_041571298.1\|1816618_1817992_-	radical SAM protein	NA	NA	NA	NA
WP_012302805.1\|1818086_1819022_-	phospholipase	NA	NA	NA	NA
WP_012302806.1\|1819042_1819648_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_049752603.1\|1819933_1823458_-	GAF domain-containing protein	NA	NA	NA	NA
WP_041570910.1\|1823445_1823646_-	hypothetical protein	NA	NA	NA	NA
WP_012302808.1\|1824140_1825472_-\|transposase	transposase	NA	NA	NA	NA
WP_012302809.1\|1825475_1825871_-\|transposase	IS200/IS605 family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.8e-26	50.4
WP_012302810.1\|1826152_1828570_-	hypothetical protein	NA	NA	NA	NA
WP_012302811.1\|1828873_1830547_+	AarF/ABC1/UbiB kinase family protein	H8ZJ56	Ostreococcus_tauri_virus	1.3e-39	30.2
WP_041570911.1\|1830623_1830806_-	hypothetical protein	NA	NA	NA	NA
WP_012301317.1\|1831061_1832393_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010424

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection