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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_010003 Petrotoga mobilis SJ95, complete genome 5 crisprs DEDDh,cas3,cas14j,csa3,RT,cas14k,Cas9_archaeal,cas3HD,cas6,cas2,cas1,cas4,cas5,cas7,cas8b1 1 2 4 0

Results visualization

1. NC_010003
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010003_1 816672-816801 TypeV NA
1 spacers
cas14j

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010003_2 1292520-1292616 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010003_3 1333698-1333764 TypeV NA
1 spacers
cas14j,RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010003_4 2069951-2070245 TypeI-B NA
4 spacers
cas2,cas1,cas4,cas3,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010003_5 2082391-2085301 TypeI-B NA
43 spacers
cas6,cas8b1,cas7,cas5,cas3,cas4,cas1,cas2

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_010003_3 3.1|1333723|17|NC_010003|CRISPRCasFinder 1333723-1333739 17 NC_010003.1 1333754-1333770 0 1.0
NC_010003_3 3.1|1333723|17|NC_010003|CRISPRCasFinder 1333723-1333739 17 NC_010003.1 1338232-1338248 0 1.0
NC_010003_3 3.1|1333723|17|NC_010003|CRISPRCasFinder 1333723-1333739 17 NC_010003.1 1338263-1338279 0 1.0
NC_010003_3 3.1|1333723|17|NC_010003|CRISPRCasFinder 1333723-1333739 17 NC_010003.1 1339789-1339805 0 1.0
NC_010003_3 3.1|1333723|17|NC_010003|CRISPRCasFinder 1333723-1333739 17 NC_010003.1 1338294-1338310 1 0.941

1. spacer 3.1|1333723|17|NC_010003|CRISPRCasFinder matches to position: 1333754-1333770, mismatch: 0, identity: 1.0

atgagccaattgagcca	CRISPR spacer
atgagccaattgagcca	Protospacer
*****************

2. spacer 3.1|1333723|17|NC_010003|CRISPRCasFinder matches to position: 1338232-1338248, mismatch: 0, identity: 1.0

atgagccaattgagcca	CRISPR spacer
atgagccaattgagcca	Protospacer
*****************

3. spacer 3.1|1333723|17|NC_010003|CRISPRCasFinder matches to position: 1338263-1338279, mismatch: 0, identity: 1.0

atgagccaattgagcca	CRISPR spacer
atgagccaattgagcca	Protospacer
*****************

4. spacer 3.1|1333723|17|NC_010003|CRISPRCasFinder matches to position: 1339789-1339805, mismatch: 0, identity: 1.0

atgagccaattgagcca	CRISPR spacer
atgagccaattgagcca	Protospacer
*****************

5. spacer 3.1|1333723|17|NC_010003|CRISPRCasFinder matches to position: 1338294-1338310, mismatch: 1, identity: 0.941

atgagccaattgagcca	CRISPR spacer
atgagtcaattgagcca	Protospacer
*****.***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_010003_5 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2083830-2083864 35 MN270271 Streptococcus phage phi-SsuNJ2_rum, complete genome 24290-24324 8 0.771
NC_010003_5 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2083830-2083864 35 KT336321 Streptococcus phage phiSC070807, complete genome 22219-22253 8 0.771
NC_010003_5 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2083830-2083864 35 MN270273 Streptococcus phage phi-SsuSC05017_rum, complete genome 22163-22197 8 0.771
NC_010003_5 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2083830-2083864 35 KT336320 Streptococcus phage phiNJ3, complete genome 24215-24249 8 0.771
NC_010003_5 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2083830-2083864 35 MN270272 Streptococcus phage phi-SsuNJ5_rum, complete genome 24214-24248 8 0.771
NC_010003_5 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2083830-2083864 35 NZ_CP011350 Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence 545862-545896 8 0.771
NC_010003_5 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2083830-2083864 35 NZ_CP013056 Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence 184925-184959 8 0.771
NC_010003_5 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2083830-2083864 35 NC_017203 Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence 18188-18222 8 0.771
NC_010003_5 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2083830-2083864 35 NC_020384 Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence 22410-22444 8 0.771
NC_010003_5 5.30|2084366|36|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2084366-2084401 36 NZ_CP050647 Escherichia coli strain PapM-36-2 plasmid pIncFIB, complete sequence 13271-13306 8 0.778
NC_010003_5 5.30|2084366|36|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2084366-2084401 36 NZ_CP010126 Escherichia coli strain C8 plasmid A, complete genome 46178-46213 8 0.778
NC_010003_5 5.30|2084366|36|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2084366-2084401 36 NZ_CP031323 Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018 plasmid pEsST2350_SE_2, complete sequence 7995-8030 9 0.75
NC_010003_5 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT 2083830-2083864 35 NZ_CP009368 Bacillus cereus strain FM1 plasmid unnamed, complete sequence 216749-216783 11 0.686

1. spacer 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to MN270271 (Streptococcus phage phi-SsuNJ2_rum, complete genome) position: , mismatch: 8, identity: 0.771

acttgtatacagaaacagaagcagacataaaaaca	CRISPR spacer
aaaaatttccagagacagaagcagagataaaaaca	Protospacer
*   .* * ****.*********** *********

2. spacer 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to KT336321 (Streptococcus phage phiSC070807, complete genome) position: , mismatch: 8, identity: 0.771

acttgtatacagaaacagaagcagacataaaaaca	CRISPR spacer
aaaaatttccagagacagaagcagagataaaaaca	Protospacer
*   .* * ****.*********** *********

3. spacer 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to MN270273 (Streptococcus phage phi-SsuSC05017_rum, complete genome) position: , mismatch: 8, identity: 0.771

acttgtatacagaaacagaagcagacataaaaaca	CRISPR spacer
aaaaatttccagagacagaagcagagataaaaaca	Protospacer
*   .* * ****.*********** *********

4. spacer 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to KT336320 (Streptococcus phage phiNJ3, complete genome) position: , mismatch: 8, identity: 0.771

acttgtatacagaaacagaagcagacataaaaaca	CRISPR spacer
aaaaatttccagagacagaagcagagataaaaaca	Protospacer
*   .* * ****.*********** *********

5. spacer 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to MN270272 (Streptococcus phage phi-SsuNJ5_rum, complete genome) position: , mismatch: 8, identity: 0.771

acttgtatacagaaacagaagcagacataaaaaca	CRISPR spacer
aaaaatttccagagacagaagcagagataaaaaca	Protospacer
*   .* * ****.*********** *********

6. spacer 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 8, identity: 0.771

---acttgtatacagaaacagaagcagacataaaaaca	CRISPR spacer
gtaattcgt---cagacacagaaacagacataaaaacg	Protospacer
   *.*.**   **** ******.*************.

7. spacer 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013056 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence) position: , mismatch: 8, identity: 0.771

---acttgtatacagaaacagaagcagacataaaaaca	CRISPR spacer
gtaattcgt---cagacacagaaacagacataaaaacg	Protospacer
   *.*.**   **** ******.*************.

8. spacer 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to NC_017203 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence) position: , mismatch: 8, identity: 0.771

---acttgtatacagaaacagaagcagacataaaaaca	CRISPR spacer
gtaattcgt---cagacacagaaacagacataaaaacg	Protospacer
   *.*.**   **** ******.*************.

9. spacer 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to NC_020384 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence) position: , mismatch: 8, identity: 0.771

---acttgtatacagaaacagaagcagacataaaaaca	CRISPR spacer
gtaattcgt---cagacacagaaacagacataaaaacg	Protospacer
   *.*.**   **** ******.*************.

10. spacer 5.30|2084366|36|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050647 (Escherichia coli strain PapM-36-2 plasmid pIncFIB, complete sequence) position: , mismatch: 8, identity: 0.778

actttattcaacatatcaacattattttctttctca	CRISPR spacer
acatccttcaaaatatcaccattattttctttggaa	Protospacer
** *. ***** ****** *************   *

11. spacer 5.30|2084366|36|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010126 (Escherichia coli strain C8 plasmid A, complete genome) position: , mismatch: 8, identity: 0.778

actttattcaacatatcaacattattttctttctca	CRISPR spacer
acatccttcaaaatatcaccattattttctttggaa	Protospacer
** *. ***** ****** *************   *

12. spacer 5.30|2084366|36|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031323 (Escherichia coli strain ST2350 isolate Es_ST2350_SE1_NDM_03_2018 plasmid pEsST2350_SE_2, complete sequence) position: , mismatch: 9, identity: 0.75

actttattcaacatatcaacattattttctttctca	CRISPR spacer
acacccttcaaaatatcaccattattttctttggaa	Protospacer
** .. ***** ****** *************   *

13. spacer 5.22|2083830|35|NC_010003|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.686

acttgtatacagaaacagaagcagacataaaaaca	CRISPR spacer
gtagttcaacagacacagaaacagacataaaaaat	Protospacer
..   *  ***** ******.************  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 459167 : 469196 9 unidentified_phage(33.33%) NA NA
DBSCAN-SWA_2 678814 : 739968 57 Staphylococcus_phage(28.57%) transposase NA
DBSCAN-SWA_3 1072000 : 1080793 9 Indivirus(16.67%) NA NA
DBSCAN-SWA_4 1358392 : 1366083 7 Marinitoga_camini_virus(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage