CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010102	Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, complete sequence	3 crisprs	DEDDh,DinG,cas3,WYL,csa3,PD-DExK	0	8	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010102_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010102_1

3041329-3041479

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGAAACAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_010102_1

>merge|NC_010102|1|3041329-3041479|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGATACCATCGCTCGCACCTCGTCACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_010102|1|1|3041329-3041479|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010102.1\|WP_000517480.1\|3036191_3036503_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_010102.1\|WP_001537530.1\|3036693_3037017_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_010102.1\|WP_000490481.1\|3040267_3041314_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_010102.1\|WP_000741647.1\|3035462_3036173_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_010102.1\|WP_001092257.1\|3037659_3039099_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_010102.1\|WP_000108313.1\|3049456_3049819_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_010102.1\|WP_001199961.1\|3051433_3052105_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_010102.1\|WP_000210454.1\|3055486_3056287_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_010102.1\|WP_000036734.1\|3052240_3053539_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_010102.1\|WP_000134246.1\|3033937_3034987_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_010102.1\|WP_000372384.1\|3039108_3040017_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_010102.1\|WP_001207996.1\|3049908_3050706_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NC_010102.1\|WP_000039870.1\|3044673_3045408_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_010102.1\|WP_000210863.1\|3053621_3055259_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_010102.1\|WP_000210915.1\|3047221_3049021_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_010102.1\|WP_023204595.1\|3043632_3044586_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_010102.1\|WP_001221537.1\|3033195_3033957_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_010102.1\|WP_001219244.1\|3034983_3035463_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_010102.1\|WP_001173663.1\|3037067_3037673_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_010102.1\|WP_001290662.1\|3045509_3047222_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
NC_010102.1\|WP_000517480.1\|3036191_3036503_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NC_010102.1\|WP_001537530.1\|3036693_3037017_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NC_010102.1\|WP_000490481.1\|3040267_3041314_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_010102.1\|WP_000741647.1\|3035462_3036173_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.13941e-119
NC_010102.1\|WP_001092257.1\|3037659_3039099_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_010102.1\|WP_000108313.1\|3049456_3049819_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_010102.1\|WP_001199961.1\|3051433_3052105_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NC_010102.1\|WP_000210454.1\|3055486_3056287_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.36327e-159
NC_010102.1\|WP_000036734.1\|3052240_3053539_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_010102.1\|WP_000134246.1\|3033937_3034987_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_010102.1\|WP_000372384.1\|3039108_3040017_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_010102.1\|WP_001207996.1\|3049908_3050706_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.04844e-101
NC_010102.1\|WP_000039870.1\|3044673_3045408_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NC_010102.1\|WP_000210863.1\|3053621_3055259_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_010102.1\|WP_000210915.1\|3047221_3049021_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_010102.1\|WP_023204595.1\|3043632_3044586_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_010102.1\|WP_001221537.1\|3033195_3033957_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
NC_010102.1\|WP_001219244.1\|3034983_3035463_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NC_010102.1\|WP_001173663.1\|3037067_3037673_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NC_010102.1\|WP_001290662.1\|3045509_3047222_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>NC_010102.1|WP_000490481.1|3040267_3041314_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_010102.1|WP_000372384.1|3039108_3040017_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_010102.1|WP_001092257.1|3037659_3039099_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPSVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_010102.1|WP_001173663.1|3037067_3037673_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_010102.1|WP_001537530.1|3036693_3037017_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NC_010102.1|WP_000517480.1|3036191_3036503_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NC_010102.1|WP_000741647.1|3035462_3036173_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGESGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_010102.1|WP_001219244.1|3034983_3035463_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_010102.1|WP_000134246.1|3033937_3034987_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NC_010102.1|WP_001221537.1|3033195_3033957_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NC_010102.1|WP_023204595.1|3043632_3044586_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNIEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_010102.1|WP_000039870.1|3044673_3045408_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_010102.1|WP_001290662.1|3045509_3047222_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_010102.1|WP_000210915.1|3047221_3049021_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGSVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSLAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVCYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGGLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NC_010102.1|WP_000108313.1|3049456_3049819_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_010102.1|WP_001207996.1|3049908_3050706_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQAHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NC_010102.1|WP_001199961.1|3051433_3052105_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_010102.1|WP_000036734.1|3052240_3053539_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_010102.1|WP_000210863.1|3053621_3055259_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NC_010102.1|WP_000210454.1|3055486_3056287_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL

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Crispr_ID: NC_010102_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010102_2

3050804-3051138

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACACA	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

5 spacers

The CRISPR arrays of NC_010102_2

>merge|NC_010102|2|3050804-3051138|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCCCGCTGGCGCGGGGAACACTAACTCATCACATCCGCGTCAGACCTCGTGACCGGTTTATCCCCGCTGGCGCGGGGAACACGACAACGCATCAAGACCGATATACACCACGCCCGGTTTATCCCCGCTGGCGCGGGGAACACAGCAAACTCAGTGGCAGCGGCGGTGCAGTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACACAGTGAAGAATAAGCGGCTGCGCCGAAACGGCGGTTTATCCCCGCTGGCGCGGGAAACACAGGGGAAAATTAACAATGGCGAATCTGAATCGCGGTTTATCCCCGCTGGCGCGGGGAACACA

>NC_010102|2|2|3050804-3051138|CRISPRCasFinder
ACGGCTATCCCCGCTGGCGCGGGGAACACT	AACTCATCACATCCGCGTCAGACCTCGTGAC
CGGTTTATCCCCGCTGGCGCGGGGAACACG	ACAACGCATCAAGACCGATATACACCACGCC
CGGTTTATCCCCGCTGGCGCGGGGAACACA	GCAAACTCAGTGGCAGCGGCGGTGCAGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACACA	CAGTGAAGAATAAGCGGCTGCGCCGAAACGG
CGGTTTATCCCCGCTGGCGCGGGAAACACA	GGGGAAAATTAACAATGGCGAATCTGAATCG
CGGTTTATCCCCGCTGGCGCGGGGAACACA

>NC_010102|2|1|3050804-3051137|CRT
ACGGCTATCCCCGCTGGCGCGGGGAACAC	TAACTCATCACATCCGCGTCAGACCTCGTGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACAACGCATCAAGACCGATATACACCACGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCAAACTCAGTGGCAGCGGCGGTGCAGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACAGTGAAGAATAAGCGGCTGCGCCGAAACGG
CGGTTTATCCCCGCTGGCGCGGGAAACAC	AGGGGAAAATTAACAATGGCGAATCTGAATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_010102|2|1|3050865-3051137|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GACAACGCATCAAGACCGATATACACCACGCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCAAACTCAGTGGCAGCGGCGGTGCAGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACAGTGAAGAATAAGCGGCTGCGCCGAAACGG
CGGTTTATCCCCGCTGGCGCGGGAAACAC	AGGGGAAAATTAACAATGGCGAATCTGAATCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010102.1\|WP_000842512.1\|3056892_3057480_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NC_010102.1\|WP_000490481.1\|3040267_3041314_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_010102.1\|WP_000210915.1\|3047221_3049021_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_010102.1\|WP_001290662.1\|3045509_3047222_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_010102.1\|WP_001072351.1\|3062643_3063675_+\|hypothetical-protein	unknown	unknown	unknown
NC_010102.1\|WP_000108313.1\|3049456_3049819_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_010102.1\|WP_001199961.1\|3051433_3052105_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_010102.1\|WP_001044460.1\|3060271_3061045_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NC_010102.1\|WP_000178258.1\|3061064_3061571_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NC_010102.1\|WP_000210454.1\|3055486_3056287_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_010102.1\|WP_000832394.1\|3061585_3062056_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NC_010102.1\|WP_000036734.1\|3052240_3053539_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_010102.1\|WP_001207996.1\|3049908_3050706_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NC_010102.1\|WP_000372384.1\|3039108_3040017_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_010102.1\|WP_000039870.1\|3044673_3045408_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_010102.1\|WP_000210863.1\|3053621_3055259_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_010102.1\|WP_023204595.1\|3043632_3044586_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_010102.1\|WP_001079650.1\|3062052_3062589_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NC_010102.1\|WP_001173663.1\|3037067_3037673_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_010102.1\|WP_001092257.1\|3037659_3039099_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349

Protein	Function_ID	Function_description	E-value
NC_010102.1\|WP_000842512.1\|3056892_3057480_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NC_010102.1\|WP_000490481.1\|3040267_3041314_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_010102.1\|WP_000210915.1\|3047221_3049021_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_010102.1\|WP_001290662.1\|3045509_3047222_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_010102.1\|WP_000108313.1\|3049456_3049819_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_010102.1\|WP_001199961.1\|3051433_3052105_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NC_010102.1\|WP_001044460.1\|3060271_3061045_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NC_010102.1\|WP_000178258.1\|3061064_3061571_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	1.6337e-105
NC_010102.1\|WP_000210454.1\|3055486_3056287_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.36327e-159
NC_010102.1\|WP_000832394.1\|3061585_3062056_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	9.26954e-100
NC_010102.1\|WP_000036734.1\|3052240_3053539_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_010102.1\|WP_001207996.1\|3049908_3050706_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.04844e-101
NC_010102.1\|WP_000372384.1\|3039108_3040017_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_010102.1\|WP_000039870.1\|3044673_3045408_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NC_010102.1\|WP_000210863.1\|3053621_3055259_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_010102.1\|WP_023204595.1\|3043632_3044586_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_010102.1\|WP_001079650.1\|3062052_3062589_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	4.23081e-119
NC_010102.1\|WP_001173663.1\|3037067_3037673_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NC_010102.1\|WP_001092257.1\|3037659_3039099_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0

>NC_010102.1|WP_001207996.1|3049908_3050706_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQAHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NC_010102.1|WP_000108313.1|3049456_3049819_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_010102.1|WP_000210915.1|3047221_3049021_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPAPEGKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGSVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSLAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVCYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGGLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NC_010102.1|WP_001290662.1|3045509_3047222_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_010102.1|WP_000039870.1|3044673_3045408_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_010102.1|WP_023204595.1|3043632_3044586_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNIEDINKIYAFKRLQHLACPAHQDLFTIKLDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_010102.1|WP_000490481.1|3040267_3041314_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_010102.1|WP_000372384.1|3039108_3040017_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_010102.1|WP_001092257.1|3037659_3039099_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPSVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_010102.1|WP_001173663.1|3037067_3037673_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_010102.1|WP_001199961.1|3051433_3052105_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_010102.1|WP_000036734.1|3052240_3053539_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_010102.1|WP_000210863.1|3053621_3055259_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NC_010102.1|WP_000210454.1|3055486_3056287_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NC_010102.1|WP_000842512.1|3056892_3057480_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NC_010102.1|WP_001044460.1|3060271_3061045_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGSSLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NC_010102.1|WP_000178258.1|3061064_3061571_+|fimbrial-protein
MTMLTRWKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTIGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NC_010102.1|WP_000832394.1|3061585_3062056_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWPLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NC_010102.1|WP_001079650.1|3062052_3062589_+|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDSHTIGSDNFDASGQTTPVPFKLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>NC_010102.1|WP_001072351.1|3062643_3063675_+|hypothetical-protein
MNQKVLFFLSIIAYPGITQAINQNVMIEPLVIRDSTNYLVLPQAQQAEFSQCKSWPHDSTVIPAKYEATLLNGSLISMFIGGITVNLYTTADVKVNTDAQCTLLNGNFPGYYGITCFVTGYDTDKAVPVRTDNGMSIIESKLYATGTMRYITEIPMDGSGFQGMAIGGAVVINTGAITPTPNTGVISNITMPPLYDPGFIFTVPGCGQYKYHSGTGSVFTNNNSTYTVASPIGFITASLDKKSVLNYNELHYNDKAENIELGKIYLMYKEKNVTWGEGFDYTLENSTINVVCADSRIKTNVDYQCRNGDMGACNNGELGRIIGNWERINVDTNCSVTVILPWQ

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Crispr_ID: NC_010102_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010102_3

3816903-3816984

Orphan

Consensus_repeat	Method
GTAGGCCCGATAAGCGCAGCGCCATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010102_3

>merge|NC_010102|3|3816903-3816984|CRISPRCasFinder
GTAGGCCCGATAAGCGCAGCGCCATCAGACATTACCACCAGGCTGATATCAATGCGGTAGGCCCGATAAGCGCAGCGCCATC

>NC_010102|3|3|3816903-3816984|CRISPRCasFinder
GTAGGCCCGATAAGCGCAGCGCCATC	AGACATTACCACCAGGCTGATATCAATGCG
GTAGGCCCGATAAGCGCAGCGCCATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010102.1\|WP_000794967.1\|3806110_3807052_+\|DUF4862-family-protein	unknown	unknown	gnl\|CDD\|374399
NC_010102.1\|WP_000665687.1\|3828639_3829002_+\|YibL-family-ribosome-associated-protein	unknown	unknown	gnl\|CDD\|182904
NC_010102.1\|WP_000832316.1\|3807180_3807654_+\|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM	unknown	unknown	gnl\|CDD\|182129
NC_010102.1\|WP_000766341.1\|3808945_3809932_+\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270397
NC_010102.1\|WP_000301822.1\|3807656_3808934_+\|2,3-diketo-L-gulonate-transporter-large-permease-YiaN	unknown	unknown	gnl\|CDD\|185020
NC_010102.1\|WP_000766687.1\|3823174_3823783_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|182405
NC_010102.1\|WP_000093287.1\|3824258_3826175_+\|PTS-mannitol-transporter-subunit-IICBA	unknown	unknown	gnl\|CDD\|237905
NC_010102.1\|WP_000893168.1\|3812937_3813633_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|183459
NC_010102.1\|WP_000193201.1\|3827540_3828131_+\|MltR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236817
NC_010102.1\|WP_000891815.1\|3813793_3814609_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_010102.1\|WP_000200195.1\|3821684_3823076_-\|L-seryl-tRNA(Sec)-selenium-transferase	unknown	unknown	gnl\|CDD\|235278
NC_010102.1\|WP_000645391.1\|3826395_3827544_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NC_010102.1\|WP_000183988.1\|3817001_3818540_-\|aldehyde-dehydrogenase-AldB	unknown	unknown	gnl\|CDD\|143434
NC_010102.1\|WP_000089528.1\|3811428_3812079_+\|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD	unknown	unknown	gnl\|CDD\|183962
NC_010102.1\|WP_001244039.1\|3812083_3812944_+\|L-ribulose-5-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|237308
NC_010102.1\|WP_000074081.1\|3809935_3811432_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212666
NC_010102.1\|WP_000582387.1\|3819837_3821688_-\|selenocysteine-specific-translation-elongation-factor	unknown	unknown	gnl\|CDD\|182508
NC_010102.1\|WP_001062558.1\|3828140_3828350_-\|hypothetical-protein	unknown	unknown	unknown
NC_010102.1\|WP_001188280.1\|3818708_3819590_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NC_010102.1\|WP_001101506.1\|3814872_3816828_+\|glycoside-hydrolase-family-127-protein	unknown	unknown	gnl\|CDD\|226063

Protein	Function_ID	Function_description	E-value
NC_010102.1\|WP_000794967.1\|3806110_3807052_+\|DUF4862-family-protein	gnl\|CDD\|374399	pfam16154, DUF4862, Domain of unknown function (DUF4862). This family consists of uncharacterized proteins around 300 residues in length and is mainly found in various high GC Gram+ bacteria, but also in several pathogenic and non-pathogenic enterobacteria (Salmonella, E. coli). Distant homology analysis suggests this could be a branch of Xylose isomerase-like TIM barrel family, but this prediction is currently not confirmed by experiment.	4.26973e-117
NC_010102.1\|WP_000665687.1\|3828639_3829002_+\|YibL-family-ribosome-associated-protein	gnl\|CDD\|182904	PRK11020, PRK11020, YibL family ribosome-associated protein.	7.58636e-60
NC_010102.1\|WP_000832316.1\|3807180_3807654_+\|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM	gnl\|CDD\|182129	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional.	1.44312e-98
NC_010102.1\|WP_000766341.1\|3808945_3809932_+\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|270397	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the solute receptor protein YiaO of TRAP transport system. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.20916e-150
NC_010102.1\|WP_000301822.1\|3807656_3808934_+\|2,3-diketo-L-gulonate-transporter-large-permease-YiaN	gnl\|CDD\|185020	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN.	0
NC_010102.1\|WP_000766687.1\|3823174_3823783_-\|glutathione-S-transferase	gnl\|CDD\|182405	PRK10357, PRK10357, putative glutathione S-transferase; Provisional.	4.37265e-154
NC_010102.1\|WP_000093287.1\|3824258_3826175_+\|PTS-mannitol-transporter-subunit-IICBA	gnl\|CDD\|237905	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional.	0
NC_010102.1\|WP_000893168.1\|3812937_3813633_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|183459	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed.	8.46194e-178
NC_010102.1\|WP_000193201.1\|3827540_3828131_+\|MltR-family-transcriptional-regulator	gnl\|CDD\|236817	PRK11001, mtlR, MltR family transcriptional regulator.	1.37879e-106
NC_010102.1\|WP_000891815.1\|3813793_3814609_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.27977e-21
NC_010102.1\|WP_000200195.1\|3821684_3823076_-\|L-seryl-tRNA(Sec)-selenium-transferase	gnl\|CDD\|235278	PRK04311, PRK04311, selenocysteine synthase; Provisional.	0
NC_010102.1\|WP_000645391.1\|3826395_3827544_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NC_010102.1\|WP_000183988.1\|3817001_3818540_-\|aldehyde-dehydrogenase-AldB	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NC_010102.1\|WP_000089528.1\|3811428_3812079_+\|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD	gnl\|CDD\|183962	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD.	1.23834e-145
NC_010102.1\|WP_001244039.1\|3812083_3812944_+\|L-ribulose-5-phosphate-3-epimerase	gnl\|CDD\|237308	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase.	0
NC_010102.1\|WP_000074081.1\|3809935_3811432_+\|carbohydrate-kinase	gnl\|CDD\|212666	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases. This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	0
NC_010102.1\|WP_000582387.1\|3819837_3821688_-\|selenocysteine-specific-translation-elongation-factor	gnl\|CDD\|182508	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional.	0
NC_010102.1\|WP_001188280.1\|3818708_3819590_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	9.48384e-77
NC_010102.1\|WP_001101506.1\|3814872_3816828_+\|glycoside-hydrolase-family-127-protein	gnl\|CDD\|226063	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown].	0

>NC_010102.1|WP_001101506.1|3814872_3816828_+|glycoside-hydrolase-family-127-protein
MNVLEVDLHKLTVSDPFLGQYQQLVRDVVIPYQWDALNDRIPEAEPSHAIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPALEKTADEVIELVAAAQCDDGYLNTYFTAKAPQERWSNLAECHELYCAGHLIEAGVAFFQATGKRRLLDVVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMMLASYFIGQRGTQPHFYDEEYEKRGQTSYWHTYGPAWMVKDKAYSQAHLPISQQQTAIGHAVRFVYLMTGVAHLARLSNDEGKRQDCLRLWKNMAQRQLYITGGIGSQSSGEAFSSDYDLPNDSVYAESCASIGLMMFARRMLEMEADSQYADVMERALYNTVLGGMALDGKHFFYVNPLEVHPKSLKFNHIYDHVKPIRQRWFGCACCPPNIARVLTSLGHYIYTPRADALYINMYVGNSMEIPVENGALKLRISGNYPWHEQVKIAIDSVQPVRHTLALRLPDWCPEAKVTLNGLDVEQDIRKGYLHIRRTWQEGDTITLTLPMPVRRVYGNPLARHVAGKVAIQRGPLVYCLEQADNGEELHNLWLPKESEFRVFEGKGLFAHKMLIQAEGEKQSAPDAQHQALWHYDNAPSSRQPQTLTFIPWFSWANRGEGEMRIWVNER
>NC_010102.1|WP_000891815.1|3813793_3814609_-|helix-turn-helix-transcriptional-regulator
MLELSMTLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCLKIQEEECVFCVEAGESLLLWPHRRHIGVEEFPADLKFYWLHFEVKAPDSDPRWLTHLSVPQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAGVSLAWKAQQLIRTHYHLPLSSAVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVREAEKLLISDARSLKEVAERCGFNDVGYFRQIFRKHTGLTPAAWKRRYSKEHVNS
>NC_010102.1|WP_000893168.1|3812937_3813633_+|L-ribulose-5-phosphate-4-epimerase
MLEQLKAEVLAANLALPAHGLVTFTWGNVSAVDETRKLMVIKPSGVEYEVMTADDMVVVEIANGKVVEGNKKPSSDTATHLALYRRYPQIGGIVHTHSRHATIWSQAGLDLPAWGTTHADYFYGAIPCTRLMTVEEINGEYEYQTGEVIIKTFEERGLDPAQIPAVLVHSHGPFAWGKNAADAVHNAVVLEECAYMGLFSRQLAPQLPDMQPELLDKHYLRKHGANAYYGQ
>NC_010102.1|WP_001244039.1|3812083_3812944_+|L-ribulose-5-phosphate-3-epimerase
MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDERLSRLEWTSAQRASLVNAMLESGVAIPSMCLSAHRRFPFGSRDETVRERAREIMTKAIRLARDLGIRTIQLAGYDVYYEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFMNSISKWKKWDEMLSSPWFTVYPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTGDSPGQFRDVPFGEGCVDFVGIFKTLHELNYRGSFLIEMWTEKASEPVLEIIQARRWIESRMQEGGFTC
>NC_010102.1|WP_000089528.1|3811428_3812079_+|3-keto-L-gulonate-6-phosphate-decarboxylase-UlaD
MSRPLLQLALDHTSLEAAQRDVALLQDHVDIVEAGTILCLTEGLSAVKALRAQCPEKIIVADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAVAQSCGGEIQMELFGNWTLDDARDWYRVGVRQAIYHRGRDAQASGQQWGEADLARMKALSDIGLELSITGGITPADLPLFRDINVKAFIAGRALAGAAHPAQVAAEFHAQIDAIWG
>NC_010102.1|WP_000074081.1|3809935_3811432_+|carbohydrate-kinase
MSNYWLGLDCGGSWLKAGLYDGAGREVAVQRLPLHALSPQPGWVERDMTELWQQCGSVISKLLAHTGVSGSQIRGLGISAQGKGLFLLDKSDRPLGKAILSSDRRAMEIVQRWQKEAVPQKLYPLTRQTLWTGHPVSLLRWVKENEPQRYAQIGCVMMTHDYLRWCLTGVKGCEESNISESNLYNMATGQYDPRLTEWLGISEIDSALPPVVGSAEICGEITAQAAAITGLAAGTPVVGGLFDVVSTALCAGIEDESTLNAVMGTWAVTSGIAHGLRDHEAHPYVYGRYVNDGQYIVHEASPTSSGNLEWFTAQWGDLSFDEINQAVASLPKAGSDLFFLPFLYGSNAGLEMTCGFYGMQALHTRAHLLQAIYEGVVFSHMTHLNRMRERFTDVCALRVTGGPAHSDVWMQMLADVSGLRIELPQVEETGCFGAALAARVGTGVYRDFREAQRDLQHPVRTLLPDMTAHALYQRKYRQYQDLITALQGYHARIKEHAL
>NC_010102.1|WP_000766341.1|3808945_3809932_+|TRAP-transporter-substrate-binding-protein
MKLHVIARSLLIAGLTVFSVSSLAAQSLRFGYETPQTDSQHIAAKKFNELLKEKTNGELTLKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFTGLAPVFNLLDVPFLFRDTAHAHKTLDGKVGDELKKSLDSKGLKVLAYWENGWRDVTNSRAPVKTPGDLKGLKIRTNNSPMNIAAFKIFGANPIPMPFSEVYTGLETRTIDAQEHPINVVWSAKFYEVQKYLSLTHHAYSPLLLVINKAKFDALSPQLQEALLSSAKEAGDYQRKLVAEDQQKIIDGMKEAGVEVLTDIDRKAFSDALGSQVRDMFLKDNPQGADLLKAVDEVQ
>NC_010102.1|WP_000301822.1|3807656_3808934_+|2,3-diketo-L-gulonate-transporter-large-permease-YiaN
MAVVIFLCCLLGGIAIGLPIAWSLLLCGAALMAYLDMFDVQIMAQTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVIAAMIMASLSGSAVADTAAVAALLVPMMRSANYPINRSVGLIASGGIIAPIIPPSIPFIIFGVSSGLSISKLFMAGIAPGIMMGAALMLTWWWQAGRLNLPSQPKATPREIWQSLVSGIWALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVAVVIYRELTFSSLYHVLVNAAKTTSVVMFLVAAAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMISIMVVGMVMDLTPTVLILTPVLLPLVKEANIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDAVRGVFPYVVVLMSLLVLFIFIPELIITPLKWIN
>NC_010102.1|WP_000832316.1|3807180_3807654_+|2,3-diketo-L-gulonate-TRAP-transporter-small-permease-YiaM
MKRVLEGILAVLIAVLSCIVFINVILRYGFESSILSVDELSRYLFVWLTFIGAIVAFMDNAHVQVTFVVEKLSPANQRRLSLLTHSLILLLCLALGWGSLQKALQDWSDHSPILGLPIGLMYIACLPTSVAIALIELRRLYHLITRNDSFQQPQQGA
>NC_010102.1|WP_000794967.1|3806110_3807052_+|DUF4862-family-protein
MKNNTGYIIGAYPCAPSFHQKSEEEETEFWRQLSDTPDIRGLEQPCLEHLHPLGDEWLLRHTPGNWQIVVTAIMETMRRRSENGGFGLASSDEEQRKACVEYYRHLHQKINKINGKNTGKVIALELHAAPLGGNPNVAQATDAFARSLKEIANWDWSCDLVLEHCDAMTGPAPRKGFLPLVNVLETIADYDISVCINWARSAIEGRDTSLPLIHTQQAKQAGKLGALMFSGTTLDGEYGEWQDLHAPFAPFCPQSLMTEKHVQELITAAAPDLLQFTGIKLLEINASADINHRINILRDGINMMKRPLAANLN
>NC_010102.1|WP_000183988.1|3817001_3818540_-|aldehyde-dehydrogenase-AldB
MTNNPPSTRIQPGEYGYPLKLKARYDNFIGGDWVAPADGEYYQNLTPVTGQPLCEVASSGKKDIDLALDAAHKAKDKWAHTSVQDRAAILFKIADRMEQNLELLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEPLGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEVIGDLLPPGVVNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNIFFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESIRSGNPLDSGTQMGAQVSHGQLETILNYIDIGKKEGADILTGGRRKELDGELKEGYYLEPTILFGKNNMRVFQEEIFGPVLAVTTFKTMEEALEIANDTQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKPLGLF
>NC_010102.1|WP_001188280.1|3818708_3819590_+|ROK-family-protein
MQQYIGIDVGGTHVKYGVINSDGEELTHYQFDTPEDASTFTRKWQDVVARCQQDYDIAAIGVSFPGHINPHNGHAAKAGALAYLDDVNLMELFSGLTDLPLVVENDANCAALGEMWRGAGQHYDNLVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMPVGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFERMATDVHLREAVNDWARYLSRGVYSVISMFDPGVVLIGGGISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQAGRLGAVWLAQQKLARS
>NC_010102.1|WP_000582387.1|3819837_3821688_-|selenocysteine-specific-translation-elongation-factor
MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLQILQLTGNLQLTVALTKADRVDEARIGEVREEVLAALDNYGFADTVLFVTAANEGRGIAELRAHLQQLPARLHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVNVGDTLWLTGVNTPMRVRSLHAQNQPTDHAYAGQRIALNIAGDAEKEQLNRGDWLLSDAPVGEAFSRVIVSLALHAPLSQWQPLHIHHAASHVTGRVSLLEGGLAELIFDTPLWLADNDRLVLRDISARATLAGARVVTLKAPRRGKRKPDYLHWLSTLAAAQDDSAALAIHLERGAVNLPDFGWARQLNPVGMRQLIEQHGFIQAGDNLLSAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMALPMEDEALVLMLIERMRDDGLIHSHHGWLHLPDHKAGFSDEQQAVWQKVEPLFGDEPWWVRDLAKETGTEEQLMRLVLRQAAQQGIITAIVKDRYYRNDRIVAFANMIRELDQERGSTCAADFRDRLNVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPQKE
>NC_010102.1|WP_000200195.1|3821684_3823076_-|L-seryl-tRNA(Sec)-selenium-transferase
MTSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRMLDDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQEAVEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLMLAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNENTGLLMKVHTSNYSIEGFTKTVEEAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEPMPQQLIAAGVSMVSFSGDKLLGGPQAGIIVGKKAMIAQLQSHPLKRALRADKMTLAALEATLRLYLHPEALAEKLPTLRLLTRSEASIREQAQRLQARLAARYGDEFALEVKPCLSQIGSGSLPVDRLPSAAMTFTPHDGRGSRLEALAARWRTLPVPVIGRIYDGRLWLDMRCLEDESRFMEMMLK
>NC_010102.1|WP_000766687.1|3823174_3823783_-|glutathione-S-transferase
MKLIGSYTSPFVRKISVLLLEKGITFEFINELPYEADNGVAQYNPLGKVPALVTEKGEYWFDSPIIAEYIELLDIAPAMVPRDPMAALKVRQLEALADGIMDAALVSVREQARPAAQQSETELLRQREKINRSLDMLESYLSDGTLKTDTVNLATIAIACAVGYLNFRRVAPGWCVSRPHLVKLVETLFQRESFARTEAPKA
>NC_010102.1|WP_000093287.1|3824258_3826175_+|PTS-mannitol-transporter-subunit-IICBA
MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLPNETLAKLVGPMITYLLPLLIGYTGGRLVGGERGGVVGAITTMGVIVGADMPMFLGSMIAGPLGGYCIKKFDSWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPAVEVLSKILAAGVNFMVAHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHEMGKSIFFLIEANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILGGMTGVFTLTILNGGLVSPASPGSILAVLAMTPKGAYFANIAAIVAAMAVSFVVSAILLKTSKVKEEDDIEAATRRMHDMKAESKGASPLAAGDVTNDLSHVRKIIVACDAGMGSSAMGAGVLRKKVQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLTNFLDSGLYTSLTERLVAAQRHNTNEEKVRDHLKDSFEEGDNNLFKLGAENIFLGRKAANKEEAIRFAGEQLVKGGYVEPEYVEAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKTGVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTTSVDEVLELLAGKKA
>NC_010102.1|WP_000645391.1|3826395_3827544_+|mannitol-1-phosphate-5-dehydrogenase
MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGENEQVDTVSGVNAVSSIGDDVVDLIAHVDLITTAVGPVVLERIAPAIAKGLVKRKAQGVDAPLNIIACENMVRGTTQLKGHVMNALADGDKAWVEQHVGFVDSAVDRIVPPSASATNDPLEVTVETFSEWIVDKTQFKGALPNIPGMELTDNLMAFVERKLFTLNTGHAITAYLGKLAGHQTIRDAILDESIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQKILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYGLPHVNLVKGIAAAMHFRSDEDPQAQELAALITEKGPQAALAQISGLDANSDVVAEAVNAYNATK
>NC_010102.1|WP_000193201.1|3827540_3828131_+|MltR-family-transcriptional-regulator
MTQNPAQVSLRPNNRLSDMQAIMEQTQAFENRVLERLNAGKTVRSFLITAVELLTEAVNILVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVLSRTEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVMALPPPPHFDTSDAALYAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK
>NC_010102.1|WP_001062558.1|3828140_3828350_-|hypothetical-protein
MAKIGENVPLLIDKAVDFMASSQAFREYLNKTPPRDYVPSEVPSESAPIYLQRLEYYRRLYRPKEEERG
>NC_010102.1|WP_000665687.1|3828639_3829002_+|YibL-family-ribosome-associated-protein
MKEVEKNEIKRLSDRLDAIRHQQAGLSLVESADKYAELEKEKETLEAEIIRLREVHSQKLSKEAQKLMNLPFRRAITKKEQADMGKLKKSVRGLIVVHPMTALGREMGLKEMTGFAKSEF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010102_2	2.2\|3050895\|31\|NC_010102\|CRISPRCasFinder	3050895-3050925	31	NZ_CP048109	Klebsiella michiganensis strain BD177 plasmid unnamed1	11553-11583	7	0.774
NC_010102_2	2.2\|3050895\|31\|NC_010102\|CRISPRCasFinder	3050895-3050925	31	MF495478	Aeromonas salmonicida plasmid pS121-1b, complete sequence	117450-117480	7	0.774
NC_010102_2	2.2\|3050895\|31\|NC_010102\|CRISPRCasFinder	3050895-3050925	31	NZ_CP022170	Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence	125043-125073	7	0.774
NC_010102_2	2.2\|3050895\|31\|NC_010102\|CRISPRCasFinder	3050895-3050925	31	NZ_CP038450	Aeromonas media strain R50-22 plasmid pAeme6, complete sequence	31199-31229	7	0.774
NC_010102_2	2.7\|3050894\|32\|NC_010102\|CRT,PILER-CR	3050894-3050925	32	MF495478	Aeromonas salmonicida plasmid pS121-1b, complete sequence	117450-117481	7	0.781
NC_010102_2	2.7\|3050894\|32\|NC_010102\|CRT,PILER-CR	3050894-3050925	32	NZ_CP038450	Aeromonas media strain R50-22 plasmid pAeme6, complete sequence	31198-31229	7	0.781
NC_010102_2	2.7\|3050894\|32\|NC_010102\|CRT,PILER-CR	3050894-3050925	32	NZ_CP022170	Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence	125043-125074	7	0.781
NC_010102_2	2.3\|3050956\|31\|NC_010102\|CRISPRCasFinder	3050956-3050986	31	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	48480-48510	8	0.742
NC_010102_2	2.6\|3050833\|32\|NC_010102\|CRT	3050833-3050864	32	JX434031	Pseudomonas phage JBD24, complete genome	2242-2273	8	0.75
NC_010102_2	2.7\|3050894\|32\|NC_010102\|CRT,PILER-CR	3050894-3050925	32	NZ_CP048109	Klebsiella michiganensis strain BD177 plasmid unnamed1	11553-11584	8	0.75
NC_010102_2	2.8\|3050955\|32\|NC_010102\|CRT,PILER-CR	3050955-3050986	32	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	48479-48510	8	0.75
NC_010102_3	3.1\|3816929\|30\|NC_010102\|CRISPRCasFinder	3816929-3816958	30	NZ_CP019064	Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence	25629-25658	8	0.733
NC_010102_1	1.1\|3041358\|32\|NC_010102\|CRISPRCasFinder	3041358-3041389	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NC_010102_1	1.1\|3041358\|32\|NC_010102\|CRISPRCasFinder	3041358-3041389	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NC_010102_2	2.1\|3050834\|31\|NC_010102\|CRISPRCasFinder	3050834-3050864	31	JX434031	Pseudomonas phage JBD24, complete genome	2242-2272	10	0.677

1. spacer 2.2|3050895|31|NC_010102|CRISPRCasFinder matches to NZ_CP048109 (Klebsiella michiganensis strain BD177 plasmid unnamed1) position: , mismatch: 7, identity: 0.774

acaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
tgagtgcatcgaggccgatatacaccacggc	Protospacer
  *..*****.**.*************** *

2. spacer 2.2|3050895|31|NC_010102|CRISPRCasFinder matches to MF495478 (Aeromonas salmonicida plasmid pS121-1b, complete sequence) position: , mismatch: 7, identity: 0.774

acaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
tcatggcatccagaccgatatagaccactgc	Protospacer
 **  ***** *********** *****  *

3. spacer 2.2|3050895|31|NC_010102|CRISPRCasFinder matches to NZ_CP022170 (Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence) position: , mismatch: 7, identity: 0.774

acaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
tcatggcatccagaccgatatagaccactgc	Protospacer
 **  ***** *********** *****  *

4. spacer 2.2|3050895|31|NC_010102|CRISPRCasFinder matches to NZ_CP038450 (Aeromonas media strain R50-22 plasmid pAeme6, complete sequence) position: , mismatch: 7, identity: 0.774

acaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
tcatggcatccagaccgatatagaccactgc	Protospacer
 **  ***** *********** *****  *

5. spacer 2.7|3050894|32|NC_010102|CRT,PILER-CR matches to MF495478 (Aeromonas salmonicida plasmid pS121-1b, complete sequence) position: , mismatch: 7, identity: 0.781

gacaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
gtcatggcatccagaccgatatagaccactgc	Protospacer
* **  ***** *********** *****  *

6. spacer 2.7|3050894|32|NC_010102|CRT,PILER-CR matches to NZ_CP038450 (Aeromonas media strain R50-22 plasmid pAeme6, complete sequence) position: , mismatch: 7, identity: 0.781

gacaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
gtcatggcatccagaccgatatagaccactgc	Protospacer
* **  ***** *********** *****  *

7. spacer 2.7|3050894|32|NC_010102|CRT,PILER-CR matches to NZ_CP022170 (Aeromonas salmonicida strain S121 plasmid pS121-1a, complete sequence) position: , mismatch: 7, identity: 0.781

gacaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
gtcatggcatccagaccgatatagaccactgc	Protospacer
* **  ***** *********** *****  *

8. spacer 2.3|3050956|31|NC_010102|CRISPRCasFinder matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.742

gcaaactcagtggcagcggcggtgcagtttt	CRISPR spacer
ccaaaatcagtggcagcggctgtgctacatc	Protospacer
 **** ************** **** .. *.

9. spacer 2.6|3050833|32|NC_010102|CRT matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 8, identity: 0.75

taact--catcacatccgcgtcagacctcgtgac	CRISPR spacer
--actgccatcacattcgcggcagacctcgccga	Protospacer
  ***  ********.**** *********. .

10. spacer 2.7|3050894|32|NC_010102|CRT,PILER-CR matches to NZ_CP048109 (Klebsiella michiganensis strain BD177 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

gacaacgcatcaagaccgatatacaccacgcc	CRISPR spacer
ctgagtgcatcgaggccgatatacaccacggc	Protospacer
   *..*****.**.*************** *

11. spacer 2.8|3050955|32|NC_010102|CRT,PILER-CR matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 8, identity: 0.75

agcaaactcagtggcagcggcggtgcagtttt	CRISPR spacer
accaaaatcagtggcagcggctgtgctacatc	Protospacer
* **** ************** **** .. *.

12. spacer 3.1|3816929|30|NC_010102|CRISPRCasFinder matches to NZ_CP019064 (Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

agacattaccaccaggctgatatcaatgcg	CRISPR spacer
agatattaccaacaggctgatattgacaac	Protospacer
***.******* ***********..*..

13. spacer 1.1|3041358|32|NC_010102|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

14. spacer 1.1|3041358|32|NC_010102|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

15. spacer 2.1|3050834|31|NC_010102|CRISPRCasFinder matches to JX434031 (Pseudomonas phage JBD24, complete genome) position: , mismatch: 10, identity: 0.677

aactcatcacatccgcgtcagacctcgtgac	CRISPR spacer
ctgccatcacattcgcggcagacctcgccga	Protospacer
   .********.**** *********. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

685269 : 714848

Salmonella_phage(38.46%)

holin,tail,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023198047.1\|685269_685764_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_000566435.1\|686177_686669_+	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_001260058.1\|686658_686922_+	chaperone NapD	NA	NA	NA	NA
WP_000778090.1\|686918_689405_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_000091679.1\|689411_690107_+	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_000013529.1\|690093_690963_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_000835182.1\|691078_691528_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_000431777.1\|691537_692140_+	cytochrome c-type protein NapC	NA	NA	NA	NA
WP_000888529.1\|692160_692778_+	cytochrome c biogenesis heme-transporting ATPase CcmA	A0A2R8FG22	Brazilian_cedratvirus	1.8e-10	29.8
WP_000990041.1\|692774_693434_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_000266004.1\|693485_694223_+	heme ABC transporter permease	NA	NA	NA	NA
WP_000074110.1\|694219_694432_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_001053607.1\|694428_694908_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_000982529.1\|694904_696836_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_000828304.1\|696832_697390_+	thiol:disulfide interchange protein DsbE	NA	NA	NA	NA
WP_001238333.1\|697386_698430_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_001115498.1\|698473_699121_-	nitrate/nitrite response regulator protein NarP	NA	NA	NA	NA
WP_000281877.1\|699850_700414_+	acyloxyacyl hydrolase	NA	NA	NA	NA
WP_001142121.1\|700605_700794_-	hypothetical protein	NA	NA	NA	NA
WP_012218603.1\|700780_700969_-	hypothetical protein	NA	NA	NA	NA
WP_000624225.1\|701097_701889_+\|tail	tail protein	Q1MVL8	Enterobacteria_phage	1.7e-48	31.6
WP_001113462.1\|702185_702389_+\|tail	tail protein	NA	NA	NA	NA
WP_001115840.1\|702557_704924_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
WP_001202279.1\|705252_706242_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	6.0e-189	97.3
WP_010989045.1\|706256_706625_+	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
WP_000894640.1\|706653_707985_-	AAA family ATPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
WP_001120499.1\|708281_708611_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
WP_000554739.1\|709203_710445_+	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
WP_001215679.1\|710447_710975_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
WP_000022213.1\|711352_711796_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
WP_000639473.1\|711849_713679_-	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
WP_000884778.1\|714026_714317_-	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
WP_000806401.1\|714344_714848_+	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3

DBSCAN-SWA_2

786922 : 796093

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|786922_787870_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8
WP_000824857.1\|787853_788585_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|788565_788673_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|788732_789464_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272845.1\|789686_791372_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_000598637.1\|791368_792088_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|792134_792602_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1\|792658_793189_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|793360_793819_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195334.1\|794059_796093_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

864367 : 874873

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001111839.1\|864367_865771_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.8e-21	27.7
WP_000981469.1\|865948_866842_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|867218_868304_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023658.1\|868303_869203_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_023194347.1\|869250_870129_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.1e-108	65.5
WP_000973709.1\|870129_870681_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_000018227.1\|870686_871679_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648784.1\|871675_872449_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565903.1\|872453_873533_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.7e-16	24.5
WP_000126349.1\|873559_874873_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_4

901713 : 933109

Salmonella_phage(55.88%)

terminase,integrase,holin

attL 892010:892023|attR 905454:905467

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
892010:892023	attL	NA	NA	NA	NA
WP_001007943.1\|901713_902895_+\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	1.3e-227	99.5
WP_001754984.1\|903258_903498_-	DUF4060 family protein	S4TR31	Salmonella_phage	9.7e-37	96.2
WP_000148481.1\|903503_904373_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4R347	Salmonella_phage	3.7e-158	94.5
WP_000187056.1\|904369_905050_-	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	3.9e-131	98.7
WP_001648679.1\|905046_905832_-	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	1.4e-148	99.2
905454:905467	attR	NA	NA	NA	NA
WP_000995351.1\|905837_906134_-	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	5.2e-48	99.0
WP_000565272.1\|906214_906364_-	host cell division inhibitory peptide Kil	NA	NA	NA	NA
WP_000687096.1\|906356_906629_-	hypothetical protein	NA	NA	NA	NA
WP_001009036.1\|907003_907408_-	transcriptional regulator	H6WRX4	Salmonella_phage	7.1e-72	99.3
WP_000869364.1\|907537_907774_+	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.8e-38	100.0
WP_076735768.1\|907739_908114_+	hypothetical protein	S4TTD7	Salmonella_phage	1.5e-63	99.2
WP_000024043.1\|908205_909042_+	replication protein	K7PGT1	Enterobacteria_phage	7.6e-52	47.4
WP_000801765.1\|909038_909734_+	hypothetical protein	G8C7U6	Escherichia_phage	2.5e-56	45.9
WP_000025838.1\|909747_910005_+	DUF4752 family protein	T1S9K2	Salmonella_phage	4.7e-37	90.6
WP_000664373.1\|910001_910616_+	hypothetical protein	M1F3E2	Salmonella_phage	1.7e-72	65.8
WP_012218646.1\|910612_911086_+	ead/Ea22-like family protein	A0A1R3Y5T1	Salmonella_virus	5.6e-36	71.2
WP_167980740.1\|911520_911994_+	DUF550 domain-containing protein	A0A220NQU1	Salmonella_phage	1.2e-38	71.3
WP_000662461.1\|911990_912548_+	DUF551 domain-containing protein	A0A220NQT9	Salmonella_phage	1.7e-95	92.8
WP_001217670.1\|913068_913308_+	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
WP_001804676.1\|913363_913603_+	hypothetical protein	H6WRY6	Salmonella_phage	5.9e-42	100.0
WP_000929790.1\|913642_914245_+	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001096548.1\|914453_915065_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	9.3e-92	99.0
WP_000801757.1\|915061_915202_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001097243.1\|915198_915888_+	antitermination protein	I6PDF8	Cronobacter_phage	5.3e-59	50.2
WP_162264800.1\|916088_916430_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	9.6e-46	80.4
WP_001005896.1\|916432_917059_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	2.1e-94	80.2
WP_001050815.1\|917055_917604_+	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_000877751.1\|917630_918188_-	hypothetical protein	NA	NA	NA	NA
WP_001118134.1\|918275_919028_+	hypothetical protein	A0A1I9KFG9	Aeromonas_phage	1.6e-16	34.1
WP_000763785.1\|919029_920361_+\|terminase	terminase	A0A0U2JTW9	Escherichia_phage	6.4e-154	59.7
WP_001001270.1\|920372_921794_+	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	3.1e-90	37.7
WP_001091611.1\|921790_922615_+	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.4e-53	42.7
WP_000964073.1\|922627_924247_+	NUDIX hydrolase	NA	NA	NA	NA
WP_000002317.1\|924262_925123_+	hypothetical protein	NA	NA	NA	NA
WP_000719055.1\|925139_926171_+	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	7.1e-76	46.9
WP_000780868.1\|926239_926722_+	hypothetical protein	A0A0U2SAX6	Escherichia_phage	1.4e-10	36.1
WP_000115737.1\|926718_927147_+	hypothetical protein	A0A0U2S646	Escherichia_phage	7.9e-21	39.1
WP_000627557.1\|927143_927578_+	hypothetical protein	NA	NA	NA	NA
WP_001139601.1\|927561_928503_+	hypothetical protein	A0A0U2SH76	Escherichia_phage	8.5e-52	37.1
WP_001018953.1\|928508_929903_+	hypothetical protein	A0A0U2KD19	Escherichia_phage	9.3e-71	37.0
WP_001133547.1\|929906_930344_+	hypothetical protein	NA	NA	NA	NA
WP_000268743.1\|930343_930931_+	hypothetical protein	NA	NA	NA	NA
WP_000729223.1\|931054_933109_+	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	2.9e-20	35.8

DBSCAN-SWA_5

936178 : 943926

Salmonella_phage(44.44%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001281712.1\|936178_937405_+	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	1.1e-147	63.4
WP_000729406.1\|937388_938015_+	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
WP_048821059.1\|938692_940063_+	hypothetical protein	A0A192Y7M1	Salmonella_phage	3.8e-210	82.7
WP_095062477.1\|940032_940638_+\|tail	tail fiber assembly protein	Q8HAB3	Salmonella_phage	2.2e-101	93.6
WP_000267959.1\|940627_940801_+	hypothetical protein	F1BUK1	Cronobacter_phage	1.7e-11	65.1
WP_001259328.1\|940876_942010_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	7.2e-37	33.0
WP_000532385.1\|942061_942436_+	DUF1353 domain-containing protein	A0A0A8J9K3	Ralstonia_phage	9.0e-13	35.0
WP_001530989.1\|942909_943344_+	hypothetical protein	NA	NA	NA	NA
WP_000343069.1\|943452_943644_+	DUF2767 family protein	A0A0M4R5C3	Salmonella_phage	5.8e-16	97.7
WP_000798891.1\|943659_943926_-	hypothetical protein	A0A0M3ULK3	Salmonella_phage	4.0e-39	89.8

DBSCAN-SWA_6

1028126 : 1035361

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|1028126_1028546_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457663.1\|1028548_1029817_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.3e-227	91.9
WP_000208509.1\|1030271_1030484_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131109.1\|1030494_1030683_+	hypothetical protein	NA	NA	NA	NA
WP_001080668.1\|1030942_1032121_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	6.6e-110	57.2
WP_000107432.1\|1032770_1033070_+	hypothetical protein	NA	NA	NA	NA
WP_000377042.1\|1033161_1033857_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_001157315.1\|1033930_1035361_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_7

1763997 : 1883509

160

Salmonella_phage(65.74%)

transposase,integrase,tail,terminase,holin,capsid,plate,portal,tRNA,head,protease

attL 1784805:1784819|attR 1888938:1888952

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023893413.1\|1763997_1764516_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_000272243.1\|1764512_1764620_-	hypothetical protein	NA	NA	NA	NA
WP_000460698.1\|1764825_1765272_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_000579793.1\|1765251_1766046_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000205337.1\|1766146_1767331_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_001222534.1\|1767449_1767797_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_000487135.1\|1767782_1768094_-	hypothetical protein	NA	NA	NA	NA
WP_000673488.1\|1768162_1768414_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_001589065.1\|1768609_1768708_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_000512149.1\|1768846_1769095_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_001576139.1\|1769408_1770050_-	hypothetical protein	NA	NA	NA	NA
WP_000513733.1\|1770280_1770463_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_001248993.1\|1770465_1770828_-	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_000457190.1\|1771000_1771639_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_000617975.1\|1771835_1772381_-	chorismate mutase	NA	NA	NA	NA
WP_012218881.1\|1772463_1772619_+	hypothetical protein	NA	NA	NA	NA
WP_000208086.1\|1772697_1772946_+	hypothetical protein	NA	NA	NA	NA
WP_000190263.1\|1773200_1774049_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_001562706.1\|1774117_1774711_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000175791.1\|1774855_1775644_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA
WP_012218884.1\|1775752_1776400_-	metal-binding protein ZinT	NA	NA	NA	NA
WP_001183698.1\|1776596_1776923_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_000456065.1\|1777116_1778250_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_000947460.1\|1778331_1778922_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_000950207.1\|1778915_1779713_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_000966648.1\|1779706_1780519_-	ABC transporter permease	NA	NA	NA	NA
WP_012218885.1\|1780508_1781483_-	ABC transporter permease	NA	NA	NA	NA
WP_000946077.1\|1781482_1783117_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000182479.1\|1783798_1784113_+	hypothetical protein	NA	NA	NA	NA
WP_000929974.1\|1784261_1784792_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	2.8e-36	70.5
1784805:1784819	attL	NA	NA	NA	NA
WP_000761748.1\|1784874_1785918_-	hypothetical protein	NA	NA	NA	NA
WP_001218120.1\|1786256_1786724_-	Hsp20 family protein	NA	NA	NA	NA
WP_077905551.1\|1786876_1787149_-	hypothetical protein	NA	NA	NA	NA
WP_000977725.1\|1787851_1788196_+	c-type lysozyme inhibitor	NA	NA	NA	NA
WP_000789471.1\|1789417_1789975_-	virulence membrane protein PagC	Q9LA63	Enterobacterial_phage	1.0e-15	33.0
WP_012218893.1\|1790786_1791050_+	virulence protein PagD	NA	NA	NA	NA
WP_001537306.1\|1791181_1791394_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_001532066.1\|1791807_1792329_+	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA
WP_000289207.1\|1792519_1792759_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	1.9e-32	87.3
WP_001033398.1\|1793248_1794037_+	hypothetical protein	NA	NA	NA	NA
WP_000787627.1\|1794358_1794586_+	hypothetical protein	NA	NA	NA	NA
WP_000917268.1\|1795020_1796145_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_000502119.1\|1796649_1797108_-\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_012218897.1\|1797303_1797516_-	isocitrate dehydrogenase	Q77Z09	Phage_21	2.5e-20	90.7
WP_000334549.1\|1797769_1798441_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.1e-80	60.4
WP_000758584.1\|1799159_1799930_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_001674128.1\|1800027_1800183_+	hypothetical protein	E5G6P4	Salmonella_phage	2.2e-05	75.0
WP_000133367.1\|1800706_1801114_-\|tail	tail assembly protein	A0A1B0V844	Salmonella_phage	4.8e-60	83.0
WP_000554731.1\|1801117_1802212_-	hypothetical protein	Q8HAB4	Salmonella_phage	2.3e-56	98.2
WP_001207833.1\|1802198_1802786_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	8.3e-114	99.5
WP_000785579.1\|1802788_1803868_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.5e-204	99.4
WP_000605051.1\|1803860_1804274_-	hypothetical protein	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
WP_001273647.1\|1804278_1804812_-\|plate	phage baseplate assembly protein	Q8HAB9	Salmonella_phage	1.9e-96	99.4
WP_001066632.1\|1804811_1805870_-\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	3.0e-202	99.7
WP_000863826.1\|1805866_1807207_-	DNA circularization protein	A0A192Y5U9	Salmonella_phage	7.4e-251	99.6
WP_000785384.1\|1807240_1809169_-\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.4
WP_000588852.1\|1809253_1809580_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_000515952.1\|1809576_1809933_-\|tail	tail protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_001007987.1\|1809932_1811429_-\|tail	tail sheath protein	A0A192Y7L1	Salmonella_phage	1.2e-276	99.4
WP_000497739.1\|1811418_1811583_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	1.0e-24	100.0
WP_000779215.1\|1811586_1812147_-	hypothetical protein	A0A192Y5U4	Salmonella_phage	3.0e-105	99.5
WP_001135697.1\|1812143_1812656_-	hypothetical protein	Q8HAC8	Salmonella_phage	4.6e-92	100.0
WP_000702409.1\|1812627_1813032_-\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	5.4e-72	99.3
WP_000927378.1\|1813028_1813352_-\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
WP_000601353.1\|1813354_1813555_-	hypothetical protein	Q8HAD1	Salmonella_phage	1.4e-28	100.0
WP_000257527.1\|1813605_1814811_-\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	3.5e-223	99.5
WP_001193639.1\|1814825_1815476_-\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	1.5e-119	100.0
WP_000466270.1\|1815453_1816695_-\|portal	phage portal protein	Q8HAD4	Salmonella_phage	8.5e-241	99.3
WP_000605609.1\|1816694_1816877_-	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
WP_000088184.1\|1816888_1818622_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	99.7
WP_000929191.1\|1818618_1819113_-\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	4.6e-89	100.0
WP_001135098.1\|1819237_1819588_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	9.8e-62	94.8
WP_001005131.1\|1819638_1820193_-	hypothetical protein	A0A192Y5Y1	Salmonella_phage	5.0e-100	99.5
WP_024132163.1\|1820433_1820826_-	hypothetical protein	A0A192Y6H8	Salmonella_phage	8.2e-49	79.2
WP_001005902.1\|1820822_1821440_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	9.4e-92	79.9
WP_162264800.1\|1821442_1821784_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	9.6e-46	80.4
WP_001047629.1\|1822188_1822986_-	antitermination protein	A0A0M4S661	Salmonella_phage	6.8e-151	99.2
WP_001617856.1\|1822975_1823122_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001096567.1\|1823118_1823760_-	hypothetical protein	S4TSR3	Salmonella_phage	1.8e-114	98.6
WP_001241022.1\|1823762_1823969_-	hypothetical protein	S4TNP0	Salmonella_phage	4.6e-35	98.5
WP_000929793.1\|1823968_1824571_-	DUF1367 family protein	S4TTI0	Salmonella_phage	4.9e-109	99.0
WP_071822254.1\|1824605_1824854_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	6.1e-42	98.8
WP_001217669.1\|1824970_1825204_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_000724996.1\|1825441_1825924_-	hypothetical protein	Q5G8W9	Enterobacteria_phage	1.1e-52	65.0
WP_001194553.1\|1826032_1826596_-	ORF6N domain-containing protein	G9L689	Escherichia_phage	4.8e-34	55.9
WP_000065107.1\|1826865_1827174_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.1e-32	97.2
WP_012218910.1\|1827170_1827518_-	DUF977 family protein	H6WRX9	Salmonella_phage	2.4e-52	89.6
WP_000800008.1\|1827528_1828278_-	ATP-binding protein	S4TNF5	Salmonella_phage	9.6e-139	99.6
WP_001191966.1\|1828280_1829342_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	1.1e-36	83.1
WP_001574095.1\|1829615_1829990_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_001013670.1\|1829955_1830192_-	hypothetical protein	A0A0M4QX15	Salmonella_phage	2.3e-38	100.0
WP_000125524.1\|1830295_1830679_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	1.3e-62	100.0
WP_001230761.1\|1830706_1831108_+	helix-turn-helix domain-containing protein	A0A0M4REM4	Salmonella_phage	3.1e-67	100.0
WP_000551857.1\|1831522_1831693_+	hypothetical protein	K7PGY4	Enterobacteria_phage	9.7e-07	49.0
WP_000394224.1\|1831833_1834761_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	95.8
WP_001539618.1\|1834723_1835881_+	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001237031.1\|1835923_1836163_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000065276.1\|1836203_1836452_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262307.1\|1836496_1837789_+\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	3.4e-253	100.0
WP_000497440.1\|1838143_1838350_+	DinI-like family protein	S4TNM0	Salmonella_phage	1.8e-31	100.0
WP_001536069.1\|1838825_1839626_+	hypothetical protein	NA	NA	NA	NA
WP_000758584.1\|1840273_1841044_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_071822255.1\|1841485_1841671_+	hypothetical protein	NA	NA	NA	NA
WP_000006338.1\|1841762_1842170_-\|tail	tail assembly protein	A0A1B0V844	Salmonella_phage	2.8e-60	84.4
WP_001096987.1\|1842176_1843400_-	hypothetical protein	A0A0M3ULD8	Salmonella_phage	6.7e-73	89.6
WP_000049937.1\|1843399_1844080_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	6.2e-129	99.1
WP_001197098.1\|1844076_1845276_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	4.1e-200	91.2
WP_001270639.1\|1845276_1845630_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.5e-44	75.2
WP_001122299.1\|1845629_1846367_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	4.9e-87	62.0
WP_000151489.1\|1846421_1846793_-	hypothetical protein	NA	NA	NA	NA
WP_000224930.1\|1846773_1847550_-	hypothetical protein	NA	NA	NA	NA
WP_001216233.1\|1847551_1847896_-	hypothetical protein	NA	NA	NA	NA
WP_000056318.1\|1847908_1848973_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.7e-136	65.9
WP_001166624.1\|1848975_1849281_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.1e-20	50.5
WP_000353818.1\|1849282_1849885_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	1.7e-61	64.6
WP_000097418.1\|1849884_1851966_-	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	1.3e-204	56.3
WP_000393955.1\|1852143_1852569_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	7.0e-38	58.8
WP_000257261.1\|1852572_1853013_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	7.5e-59	77.4
WP_001051851.1\|1853024_1854176_-	DUF3383 domain-containing protein	A0A0M4RD26	Salmonella_phage	3.1e-189	88.8
WP_000538608.1\|1854178_1854745_-	hypothetical protein	A0A0M4R331	Salmonella_phage	1.8e-105	99.5
WP_001142490.1\|1854719_1855109_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	2.7e-68	98.4
WP_000008737.1\|1855095_1855650_-	hypothetical protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
WP_001125673.1\|1855646_1856054_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.8e-73	100.0
WP_001040701.1\|1856019_1856388_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	1.9e-60	99.2
WP_000627464.1\|1856429_1857371_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
WP_000128058.1\|1857382_1857880_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	3.0e-88	100.0
WP_000873158.1\|1857884_1859117_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	5.6e-229	99.8
WP_077905552.1\|1859131_1859869_-\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	1.7e-111	99.5
WP_000113507.1\|1859756_1861223_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.8e-282	99.8
WP_000204797.1\|1861222_1862626_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	4.2e-188	69.9
WP_001118119.1\|1862591_1863344_-	hypothetical protein	G8C7P2	Escherichia_phage	1.5e-11	60.4
WP_001070544.1\|1863433_1863661_-	hypothetical protein	NA	NA	NA	NA
WP_000495545.1\|1863757_1864135_-	hypothetical protein	Q6UAR9	Klebsiella_phage	2.2e-43	68.5
WP_001050879.1\|1864177_1864717_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.5e-08	38.4
WP_001075998.1\|1864713_1865328_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
WP_000226307.1\|1865327_1865609_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_001294876.1\|1865595_1865985_-	membrane protein	K7PHB9	Enterobacterial_phage	3.1e-40	70.2
WP_000798706.1\|1866201_1866651_+	lipoprotein	NA	NA	NA	NA
WP_001534733.1\|1866786_1866912_-	hypothetical protein	NA	NA	NA	NA
WP_001047630.1\|1867310_1868108_-	antitermination protein	A0A0M4S661	Salmonella_phage	4.0e-151	99.6
WP_001617856.1\|1868097_1868244_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001096500.1\|1868240_1868852_-	ninG protein	A0A0M4RU10	Salmonella_phage	7.9e-91	97.5
WP_000940761.1\|1869060_1869663_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.6e-80	70.9
WP_024132167.1\|1869726_1870032_-	hypothetical protein	NA	NA	NA	NA
WP_100148602.1\|1870312_1870693_-	T3SS effector NleG family protein	B6DZB9	Enterobacteria_phage	7.5e-23	51.5
WP_000089409.1\|1871233_1871629_-	DUF977 family protein	A0A088CBK9	Shigella_phage	2.0e-18	39.3
WP_167980734.1\|1871641_1872310_-	replication protein	A0A0U2JGJ0	Escherichia_phage	8.7e-67	74.8
WP_012218929.1\|1873112_1873631_-	hypothetical protein	NA	NA	NA	NA
WP_001033911.1\|1873617_1873872_-	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
WP_001574209.1\|1873970_1874369_+	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.2e-18	56.0
WP_001674119.1\|1874664_1874820_+	DUF1391 family protein	M4QQ57	Salicola_phage	4.7e-08	55.3
WP_000613373.1\|1875201_1875483_+	hypothetical protein	K7PGY4	Enterobacteria_phage	2.8e-06	53.2
WP_000023723.1\|1876032_1878723_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	1.8e-115	75.3
WP_001126032.1\|1878715_1879546_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
WP_001033921.1\|1879581_1879902_+	hypothetical protein	A0A222YY67	Escherichia_phage	3.6e-34	60.2
WP_000066251.1\|1879894_1880227_+	hypothetical protein	S4TNP2	Salmonella_phage	8.8e-20	81.8
WP_000069468.1\|1880223_1880727_+	hypothetical protein	A0A075B8H2	Enterobacteria_phage	6.0e-36	92.3
WP_000089140.1\|1880776_1881013_+	excisionase	NA	NA	NA	NA
WP_000741325.1\|1881002_1882145_+\|integrase	tyrosine-type recombinase/integrase	O21929	Phage_21	8.2e-174	80.3
WP_000444509.1\|1882258_1883509_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
1888938:1888952	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2858223 : 2869891

Enterobacteria_phage(75.0%)

integrase

attL 2864359:2864372|attR 2874217:2874230

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000101258.1\|2858223_2859417_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	5.3e-107	49.6
WP_000734785.1\|2859444_2860284_-	HAD family hydrolase	NA	NA	NA	NA
WP_000995668.1\|2860286_2861900_-	hypothetical protein	NA	NA	NA	NA
WP_000210080.1\|2862177_2862744_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.7e-53	62.2
WP_000984211.1\|2862760_2863006_-	transcriptional regulator	Q7M294	Enterobacteria_phage	6.3e-31	76.5
WP_000198636.1\|2863002_2863740_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.4e-80	64.4
WP_000556585.1\|2864277_2864544_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	3.4e-30	71.6
2864359:2864372	attL	NA	NA	NA	NA
WP_065304628.1\|2864540_2865092_+	ash family protein	Q7M2A7	Enterobacteria_phage	2.1e-34	64.7
WP_001216599.1\|2865088_2865316_+	hypothetical protein	NA	NA	NA	NA
WP_000743150.1\|2865312_2865633_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000700971.1\|2865647_2867981_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	85.1
WP_000124731.1\|2868694_2869891_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.2e-105	49.4
2874217:2874230	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010102

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection