CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_010158	Yersinia pestis Angola plasmid pMT-pPCP, complete sequence	0 crisprs	NA	0	1
NC_010159	Yersinia pestis Angola, complete sequence	4 crisprs	DEDDh,csa3,DinG,cas3,cas6f,cas7f,cas5f,cas8f,cas1	5	22
NC_010157	Yersinia pestis Angola plasmid new_pCD, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9694 : 90277

Salmonella_phage(84.85%)

transposase,terminase,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000255944.1\|9694_10717_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|10716_11496_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002213433.1\|12532_12727_+	Rop family plasmid primer RNA-binding protein	NA	NA	NA	NA
WP_002218512.1\|13962_14388_+	pesticin immunity protein	NA	NA	NA	NA
WP_002218509.1\|14422_15496_-	pesticin	M4PYB4	Vibrio_phage	6.6e-16	31.6
WP_002221218.1\|15722_16028_+	hypothetical protein	NA	NA	NA	NA
WP_002231174.1\|16270_17209_+	omptin family plasminogen activator Pla	NA	NA	NA	NA
WP_002213446.1\|17395_17695_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_002225538.1\|17694_18036_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000255944.1\|19302_20325_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_012228794.1\|20324_21104_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.9e-138	99.2
WP_000920226.1\|21602_21869_+	hypothetical protein	J9Q7G8	Salmonella_phage	1.6e-40	100.0
WP_002213303.1\|25402_26149_-	hypothetical protein	J9Q6J5	Salmonella_phage	4.1e-134	96.4
WP_012228795.1\|26138_28055_-	AAA family ATPase	J9Q741	Salmonella_phage	0.0e+00	98.4
WP_002213300.1\|28284_29370_-	metallophosphoesterase	J9Q7S9	Salmonella_phage	7.7e-206	98.6
WP_002214160.1\|31168_31813_-	hypothetical protein	J9Q739	Salmonella_phage	1.8e-122	98.1
WP_012228763.1\|32567_33632_+	replication protein RepA	J9Q7H0	Salmonella_phage	5.4e-188	98.3
WP_002222711.1\|34200_34413_-	hypothetical protein	J9Q7S8	Salmonella_phage	6.8e-34	95.7
WP_002227818.1\|34412_34748_-	hypothetical protein	J9Q7Z5	Salmonella_phage	5.2e-52	91.0
WP_002228796.1\|34744_34924_-	hypothetical protein	J9Q6J1	Salmonella_phage	5.8e-18	86.4
WP_002228797.1\|34964_35240_-	hypothetical protein	J9Q738	Salmonella_phage	1.7e-45	95.6
WP_002222869.1\|35307_35718_-	hypothetical protein	J9Q7G9	Salmonella_phage	4.1e-75	97.8
WP_002222868.1\|35701_36073_-	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	4.0e-61	87.8
WP_002222866.1\|36226_37057_-	hypothetical protein	J9Q7Z4	Salmonella_phage	9.3e-127	98.6
WP_002231164.1\|37894_39037_+	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	1.7e-219	100.0
WP_011901832.1\|39235_39991_+	hypothetical protein	J9Q742	Salmonella_phage	3.8e-135	98.4
WP_002213759.1\|40229_40688_+\|transposase	IS200/IS605-like element IS1541A family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.0e-13	35.3
WP_002211802.1\|40887_41169_+	hypothetical protein	J9Q753	Salmonella_phage	6.1e-46	93.5
WP_002211801.1\|41374_41857_+	hypothetical protein	J9Q805	Salmonella_phage	5.1e-85	94.4
WP_002214137.1\|42495_42723_-	hypothetical protein	NA	NA	NA	NA
WP_002211799.1\|42807_43458_-	hypothetical protein	J9Q754	Salmonella_phage	4.1e-114	99.5
WP_002214134.1\|43780_44308_-	transcriptional regulator	J9Q6L0	Salmonella_phage	6.4e-81	98.0
WP_002211796.1\|44312_44735_-	hypothetical protein	J9Q806	Salmonella_phage	4.1e-62	85.0
WP_002214131.1\|44794_45073_-	hypothetical protein	J9Q7T9	Salmonella_phage	4.4e-41	97.8
WP_012228815.1\|45075_46635_-	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	1.4e-293	98.8
WP_002418921.1\|46744_47398_+	ParB/RepB/Spo0J family partition protein	J9Q756	Salmonella_phage	6.9e-117	98.6
WP_002211792.1\|47397_48066_+	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	9.5e-114	98.2
WP_002211791.1\|48062_48701_+	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	4.7e-110	98.1
WP_002211790.1\|48693_48948_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.0e-40	97.6
WP_002211789.1\|48953_49844_+	hypothetical protein	J9Q7I6	Salmonella_phage	6.2e-169	99.7
WP_000176291.1\|49853_50120_+	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_002211788.1\|50315_50957_+	hypothetical protein	J9Q6D4	Salmonella_phage	1.2e-108	98.1
WP_002211787.1\|50959_52216_+\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.8e-251	100.0
WP_012228810.1\|52249_53824_+	hypothetical protein	J9Q7R1	Salmonella_phage	9.2e-301	99.0
WP_002231160.1\|53846_54743_+	hypothetical protein	J9Q7F4	Salmonella_phage	3.9e-147	96.3
WP_012228823.1\|54769_55576_+	hypothetical protein	J9Q710	Salmonella_phage	5.6e-145	91.4
WP_002211783.1\|55650_56313_+	Ig domain-containing protein	J9Q6D6	Salmonella_phage	8.5e-107	97.2
WP_002211782.1\|56356_56791_+	hypothetical protein	J9Q7Y3	Salmonella_phage	3.1e-73	99.3
WP_002211781.1\|56790_57624_+	hypothetical protein	J9Q7R2	Salmonella_phage	2.9e-152	99.6
WP_001027662.1\|57721_58066_+	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_002211780.1\|58056_58530_+	hypothetical protein	J9Q711	Salmonella_phage	8.9e-82	99.4
WP_002211779.1\|58531_58915_+	hypothetical protein	J9Q6D8	Salmonella_phage	1.1e-66	98.4
WP_002211778.1\|58989_59736_+	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	5.2e-129	98.8
WP_000163862.1\|59795_60113_+	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_000952684.1\|60238_60463_+	hypothetical protein	J9Q7F7	Salmonella_phage	4.2e-34	100.0
WP_012228764.1\|60470_65036_+	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	89.9
WP_000440566.1\|65077_65413_+\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-59	97.3
WP_011901831.1\|65502_66201_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	6.4e-137	99.6
WP_002211774.1\|66193_66991_+	C40 family peptidase	J9Q7R4	Salmonella_phage	1.4e-156	96.2
WP_002211773.1\|66978_67566_+\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	5.1e-103	92.8
WP_002214118.1\|67587_72219_+	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	88.6
WP_002211771.1\|72275_72854_+	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	3.4e-27	38.8
WP_012228802.1\|72934_75823_+\|tail	phage tail protein	J9Q6E3	Salmonella_phage	4.5e-11	33.1
WP_002211769.1\|76124_76733_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.8e-64	62.2
WP_012228761.1\|76866_78342_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-181	100.0
WP_002213132.1\|79005_80034_-	hypothetical protein	J9Q7Z3	Salmonella_phage	1.3e-165	98.5
WP_002213135.1\|80153_80585_-	hypothetical protein	J9Q6I8	Salmonella_phage	2.6e-72	98.6
WP_002215095.1\|80805_81057_+	hypothetical protein	NA	NA	NA	NA
WP_012228774.1\|81129_81693_+	DNA-binding protein	J9Q7G7	Salmonella_phage	2.2e-63	64.6
WP_002213759.1\|81866_82325_+\|transposase	IS200/IS605-like element IS1541A family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	5.0e-13	35.3
WP_002213143.1\|82433_82877_-	hypothetical protein	J9Q7S4	Salmonella_phage	7.8e-72	100.0
WP_012228814.1\|82873_86398_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	99.0
WP_002211767.1\|86578_87814_-	AAA family ATPase	J9Q733	Salmonella_phage	3.0e-238	99.3
WP_002211766.1\|87910_90277_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	94.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_010159

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CRISPR-Cas detection and classification

Crispr_ID: NC_010159_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010159_1

1783634-1783898

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR

4 spacers

cas1,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NC_010159_1

>merge|NC_010159|1|1783634-1783898|CRISPRCasFinder,CRT,PILER-CR
TTTGATTATTGCCTGTGCGGCAGTGAACTCAGGGGACTGGCGAACAATGTCTTTCATGATTTTCTAAGCTGCCTGTGCAGCAGTGAACATTATCTGAATGGCATTTTCTTTGGCGCAGATTTTCTAAGCTGCCTGTGCGGCAGTGAACTCGCCATTCCGTGAACCTGAGCGCGTTCGCGATTTCTAAGCTGCCTGTGCGGCAGTGAACTCGTCAATGAATTGCGGGACGTTCCGGCGTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_010159|1|1|1783634-1783898|CRISPRCasFinder
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGTCAATGAATTGCGGGACGTTCCGGCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_010159|1|1|1783634-1783898|CRT
TTTGATTATTGCCTGTGCGGCAGTGAAC	TCAGGGGACTGGCGAACAATGTCTTTCATGAT
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGTCAATGAATTGCGGGACGTTCCGGCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_010159|1|1|1783694-1783898|PILER-CR
TTTCTAAGCTGCCTGTGCAGCAGTGAAC	ATTATCTGAATGGCATTTTCTTTGGCGCAGAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGCCATTCCGTGAACCTGAGCGCGTTCGCGA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TCGTCAATGAATTGCGGGACGTTCCGGCG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010159.1\|WP_002216551.1\|1771372_1771582_-\|hypothetical-protein	unknown	unknown	unknown
NC_010159.1\|WP_002210201.1\|1795143_1796532_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NC_010159.1\|WP_002211865.1\|1773624_1774644_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NC_010159.1\|WP_002210202.1\|1796631_1797711_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NC_010159.1\|WP_002210193.1\|1786044_1787319_-\|hypothetical-protein	unknown	unknown	unknown
NC_010159.1\|WP_002210197.1\|1790762_1791587_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_010159.1\|WP_002210191.1\|1782293_1783274_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_010159.1\|WP_002211866.1\|1774721_1775276_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224
NC_010159.1\|WP_002210192.1\|1784235_1785480_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NC_010159.1\|WP_002211861.1\|1770331_1771258_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NC_010159.1\|WP_002210200.1\|1794086_1795127_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NC_010159.1\|WP_012229482.1\|1777255_1778602_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|274203
NC_010159.1\|WP_012229481.1\|1771705_1773064_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NC_010159.1\|WP_002211864.1\|1773110_1773614_+\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708
NC_010159.1\|WP_002211867.1\|1775286_1776291_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_010159.1\|WP_012229483.1\|1791587_1792463_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_010159.1\|WP_002213840.1\|1788595_1789534_-\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NC_010159.1\|WP_002211868.1\|1776308_1777259_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NC_010159.1\|WP_002230953.1\|1787357_1788473_-\|hypothetical-protein	unknown	unknown	unknown
NC_010159.1\|WP_002210196.1\|1789560_1790616_-\|glycoside-hydrolase-family-130-protein	unknown	unknown	gnl\|CDD\|350124

Protein	Function_ID	Function_description	E-value
NC_010159.1\|WP_002210201.1\|1795143_1796532_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NC_010159.1\|WP_002211865.1\|1773624_1774644_+\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	6.34333e-143
NC_010159.1\|WP_002210202.1\|1796631_1797711_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	2.93026e-166
NC_010159.1\|WP_002210197.1\|1790762_1791587_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NC_010159.1\|WP_002210191.1\|1782293_1783274_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NC_010159.1\|WP_002211866.1\|1774721_1775276_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94
NC_010159.1\|WP_002210192.1\|1784235_1785480_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.65074e-32
NC_010159.1\|WP_002213840.1\|1788595_1789534_-\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	6.29599e-176
NC_010159.1\|WP_002210200.1\|1794086_1795127_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.56156e-83
NC_010159.1\|WP_012229482.1\|1777255_1778602_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|274203	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	0
NC_010159.1\|WP_012229481.1\|1771705_1773064_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.37807e-50
NC_010159.1\|WP_002211864.1\|1773110_1773614_+\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	1.50048e-90
NC_010159.1\|WP_002211867.1\|1775286_1776291_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_010159.1\|WP_012229483.1\|1791587_1792463_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	6.91357e-58
NC_010159.1\|WP_002211861.1\|1770331_1771258_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	3.26573e-51
NC_010159.1\|WP_002211868.1\|1776308_1777259_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	1.12008e-157
NC_010159.1\|WP_002210196.1\|1789560_1790616_-\|glycoside-hydrolase-family-130-protein	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	9.75278e-165

>NC_010159.1|WP_002210191.1|1782293_1783274_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MENAIHSSDLKTILHSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILTRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRAKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NC_010159.1|WP_012229482.1|1777255_1778602_-|type-I-F-CRISPR-associated-protein-Csy1
MSDEGLAAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRQELIARYEVRNWLTDAANRAGQIKLATHAPKYTHSDSKSSGILNIELQSKKKDYFSSVDLAEQASDVIGNAAVFDLVKLLQSECEGGSLIKCLEQGDNSVLKLFSNDDELVEEWTTKFKSILNNEKFTSHKLAKQFYFPVGPDQYHLLSPLFSSSLAQAMHQRIIEARFSDQSKEAKAAHKAGRWHPTVRVLYLDTAVQHIGGTKPQNISYLNSVRGGKVWLLPCGAPSWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQLYLLGVKPLRNTMDIRAARLACCDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPTRAMDDPVFKLEREKEDWKQEVSQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETSS
>NC_010159.1|WP_002211868.1|1776308_1777259_-|type-I-F-CRISPR-associated-protein-Csy2
MSSLIVLHQVRVENANAIAGLTYGFPAITHFLGYSHALSRKLQSSHGLTLRGCAVICHYQQVHAYLSGWDYVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLVIECDGTIANGDDGANALEKHLASLCLTQRLAGGTITNIRRVKVINYPETEVATRRLLCRLLPGFALLDRSELLAEHLNRLRQTNPQAEMLDAWLDFSALKIQAIPPQSDTPVESGAPAPWGYVGKPAAGYLVPIVTGYRAISPLYAPGEVDKTRDPHTPFRFVESLYGIGEWRGLHRITDLRQLLWGYHQEGDNYLCRCALPASVDTYLLNDEE
>NC_010159.1|WP_002211867.1|1775286_1776291_-|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPAKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NC_010159.1|WP_002211866.1|1774721_1775276_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NC_010159.1|WP_002211865.1|1773624_1774644_+|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGRIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGTDCMLVGADTIEQINSAVTALRISLNAEEHFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NC_010159.1|WP_002211864.1|1773110_1773614_+|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHYPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NC_010159.1|WP_012229481.1|1771705_1773064_+|MFS-transporter
MQTLPSEKIRMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYTVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NC_010159.1|WP_002216551.1|1771372_1771582_-|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK
>NC_010159.1|WP_002211861.1|1770331_1771258_-|LysR-family-transcriptional-regulator
MRKLPSLRMLRVFEEACHTLSFSKAAEALFMTQSAASRQIKQLENFLGKSLFIRGHRGLELTQDEMTMLPIVRQSLDLLEEGVKHVQLSNPLQHLRLQVAPTFATRWLAPRLVTLLQRNSQLQIALISEIRQKYCDFDSAIRFGDIRRDLSNGHLLCYEQLCLVASPLVMQQGRFPPLTALPQLHILNGDSRLTNWQQWLDAAQITVAAGHNALEFSTQDQVISACTTGAGYAVLDILMISHELDNGLLRQVLPLTVTSTHGYWLEIPQDKGHSPRVIIFQEWLQRELKRDIAKRYSKGEAKPLPAVL
>NC_010159.1|WP_002210192.1|1784235_1785480_+|mechanosensitive-ion-channel-family-protein
MQQRISQWLERLGMEFSDVMSLTMVIGLILLISVMIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NC_010159.1|WP_002210193.1|1786044_1787319_-|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NC_010159.1|WP_002230953.1|1787357_1788473_-|hypothetical-protein
MKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHAGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NC_010159.1|WP_002213840.1|1788595_1789534_-|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGVGDKDVYNITAPFTSAGQVVIAGRVEARDSEHSTIVFFSEQQGQWAPVENAPTFQLQDPFFTRIEDELILGGVEINPHPDNPRQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITSAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTKNYTPIKIIAARDNFLPGATKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NC_010159.1|WP_002210196.1|1789560_1790616_-|glycoside-hydrolase-family-130-protein
MMRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NC_010159.1|WP_002210197.1|1790762_1791587_-|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NC_010159.1|WP_012229483.1|1791587_1792463_-|sugar-ABC-transporter-permease
MTFLKLKDKQVGSVLAASYLGYTSIFWFYPFILLAVLSLTEWRFVGIPTFNGLNNFILVMQDPLFWKSMLNVMRFLMYYLPIVFISSFLFAFGLQKLKHGRTFVALSFLLANVSSGVAYSIVFSKIFSQNGPLNTFLYDWFGFTLPWLTSPDFAMLSIALVVTWKFVGYYGLILFSGLNSIPKEIYSAAELDNTRTIKRLFHITLPMINPQLIMVLVLAITVSFAIFTEPYLITGGGPLNSTTTPMIVMYETAFMKMQPSWAATMSIFIALISFGIILGVRKLLERKVEIV
>NC_010159.1|WP_002210200.1|1794086_1795127_+|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NC_010159.1|WP_002210201.1|1795143_1796532_+|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK
>NC_010159.1|WP_002210202.1|1796631_1797711_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MASVSLANVVKYYGKIKTIDNVNLEIASREFIVLVGPSGCGKSTLLRMIAGLEDVNSGEIKIEDKDVTQTNAGARGVSMVFQSYALYPHMTVRENLAFGLKNIKIPKQEIADRIANASNILQLDNYLERLPQHLSGGQRQRVAIGRSIVSRSKVFLFDEPLSNLDAALRIQMRQEIGKLHERLGKTTIYVTHDQTEAMTLADRIVILNQGRIEQIGTPEEVYNHPANLFVAGFIGAPKINLFNAVYEQDGYVNINGLRFFIPRLVNLDLAMGAVLTLAIRPEHFSLTNSTELSLAVKTDITEMHGDSTVVLFSSTEHGTLQMKVPYQLKLSVGEDVTIGASCEHILVFDEHGQAIHGES

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Crispr_ID: NC_010159_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010159_2

3128812-3128933

Orphan

Consensus_repeat	Method
CTTAATGCCAATATTAATCGACATAATCAATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010159_2

>merge|NC_010159|2|3128812-3128933|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTGTAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCTCTTAATGCCAATATTAATCGATATAATCAATTG

>NC_010159|2|2|3128812-3128933|CRISPRCasFinder
CTTAATGCCAATATTAATCGACATAATCAATTG	TAGTGGAGGGGGAGGATTGAGTTTTTTCCAAAAAAACATATTGCAGTATTAAATCT
CTTAATGCCAATATTAATCGATATAATCAATTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010159.1\|WP_012229846.1\|3134275_3135028_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235936
NC_010159.1\|WP_002213030.1\|3131569_3132307_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187594
NC_010159.1\|WP_002213017.1\|3136383_3136632_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|180851
NC_010159.1\|WP_002210473.1\|3116670_3117288_-\|DUF3540-domain-containing-protein	unknown	unknown	gnl\|CDD\|371873
NC_010159.1\|WP_002231245.1\|3129872_3130295_+\|beta-hydroxyacyl-ACP-dehydratase	unknown	unknown	gnl\|CDD\|223835
NC_010159.1\|WP_002214737.1\|3116299_3116665_-\|DUF4150-domain-containing-protein	unknown	unknown	gnl\|CDD\|372665
NC_010159.1\|WP_002210471.1\|3115815_3116307_-\|type-VI-secretion-system-lipoprotein-TssJ	unknown	unknown	gnl\|CDD\|226052
NC_010159.1\|WP_002214739.1\|3117280_3118384_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_010159.1\|WP_041854810.1\|3132332_3133562_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	unknown	unknown	gnl\|CDD\|225959
NC_010159.1\|WP_002224087.1\|3118409_3120629_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|370755
NC_010159.1\|WP_012229833.1\|3112746_3114354_-\|DotU-family-type-IV/VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|168775
NC_010159.1\|WP_002213039.1\|3125241_3127659_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366708
NC_010159.1\|WP_012229841.1\|3130284_3131568_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	unknown	unknown	gnl\|CDD\|238430
NC_010159.1\|WP_002213038.1\|3127812_3128559_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180440
NC_010159.1\|WP_002228570.1\|3135905_3136346_+\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372819
NC_010159.1\|WP_002213026.1\|3133554_3134274_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|223955
NC_010159.1\|WP_000255944.1\|3122645_3123668_+\|IS21-like-element-IS100-family-transposase	unknown	unknown	gnl\|CDD\|226950
NC_010159.1\|WP_002213036.1\|3129289_3129508_+\|hypothetical-protein	unknown	unknown	unknown
NC_010159.1\|WP_001297096.1\|3123667_3124447_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181681
NC_010159.1\|WP_002213024.1\|3135030_3135819_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491

Protein	Function_ID	Function_description	E-value
NC_010159.1\|WP_012229846.1\|3134275_3135028_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235936	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated.	8.73637e-133
NC_010159.1\|WP_002213030.1\|3131569_3132307_+\|SDR-family-oxidoreductase	gnl\|CDD\|187594	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs. This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	2.26541e-68
NC_010159.1\|WP_002213017.1\|3136383_3136632_+\|acyl-carrier-protein	gnl\|CDD\|180851	PRK07117, PRK07117, acyl carrier protein; Validated.	4.77778e-09
NC_010159.1\|WP_002210473.1\|3116670_3117288_-\|DUF3540-domain-containing-protein	gnl\|CDD\|371873	pfam12059, DUF3540, Protein of unknown function (DUF3540). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 212 to 238 amino acids in length. This protein has a conserved SCL sequence motif.	8.74607e-21
NC_010159.1\|WP_012229841.1\|3130284_3131568_+\|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	gnl\|CDD\|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	2.55286e-134
NC_010159.1\|WP_002214737.1\|3116299_3116665_-\|DUF4150-domain-containing-protein	gnl\|CDD\|372665	pfam13665, DUF4150, Domain of unknown function (DUF4150).	1.30508e-14
NC_010159.1\|WP_002231245.1\|3129872_3130295_+\|beta-hydroxyacyl-ACP-dehydratase	gnl\|CDD\|223835	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism].	8.01872e-39
NC_010159.1\|WP_002214739.1\|3117280_3118384_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	6.90841e-22
NC_010159.1\|WP_041854810.1\|3132332_3133562_+\|hydroxymethylglutaryl-CoA-synthase-family-protein	gnl\|CDD\|225959	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism].	4.44296e-140
NC_010159.1\|WP_002224087.1\|3118409_3120629_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|370755	pfam09937, DUF2169, Uncharacterized protein conserved in bacteria (DUF2169). This domain, found in various hypothetical prokaryotic proteins, has no known function.	5.8582e-34
NC_010159.1\|WP_012229833.1\|3112746_3114354_-\|DotU-family-type-IV/VI-secretion-system-protein	gnl\|CDD\|168775	PRK07034, PRK07034, hypothetical protein; Provisional.	0
NC_010159.1\|WP_002213039.1\|3125241_3127659_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366708	pfam01565, FAD_binding_4, FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidizes the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan.	1.41205e-31
NC_010159.1\|WP_002213038.1\|3127812_3128559_-\|SDR-family-oxidoreductase	gnl\|CDD\|180440	PRK06172, PRK06172, SDR family oxidoreductase.	1.01866e-70
NC_010159.1\|WP_002228570.1\|3135905_3136346_+\|lipocalin-like-domain-containing-protein	gnl\|CDD\|372819	pfam13924, Lipocalin_5, Lipocalin-like domain. This family includes domains distantly related to lipocalins. However, they do contain the important GXW motif in the first strand. The protein in this family include aln5, which is involved in biosynthesis of alnumycin. The family also includes the ZFK protein from Trypanosoma brucei which is a protein kinase. This domain is at the C-terminus of that protein. The domain is also found as the C-terminal domain in StiJ a protein involved in producing stigmatellin. This domain has been assumed to catalyze a final cyclisation reaction.	5.67247e-46
NC_010159.1\|WP_002213026.1\|3133554_3134274_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|223955	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism].	1.17502e-35
NC_010159.1\|WP_002210471.1\|3115815_3116307_-\|type-VI-secretion-system-lipoprotein-TssJ	gnl\|CDD\|226052	COG3521, COG3521, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	8.63501e-49
NC_010159.1\|WP_000255944.1\|3122645_3123668_+\|IS21-like-element-IS100-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.49492e-79
NC_010159.1\|WP_001297096.1\|3123667_3124447_+\|AAA-family-ATPase	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	5.26232e-178
NC_010159.1\|WP_002213024.1\|3135030_3135819_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.49415e-40

>NC_010159.1|WP_002213038.1|3127812_3128559_-|SDR-family-oxidoreductase
MKKTILITGALSGIGNTATKLFSEMGYNVVFSGRRPEEGRVILDDLKRINKDVLYVNADMNSESDIKHLIEMTLERFGSLDVAVNCAGTVGETAEIQAVTQDNFHLVFNTNVLGTLLAMKYQIPVMVERGKGSIINISSIAGLVGLPSTGIYVASKHAIEGLTKTAALEVATTGVRINSISPGPVEGKMFDRFLGHDENNKKAFIEMMPNKRFTTQEEVAHTIVFLAEDNVTAITGQTITIDGGYTAQ
>NC_010159.1|WP_002213039.1|3125241_3127659_-|GNAT-family-N-acetyltransferase
MTTTLDIINSAKDLDPAEYRAFFLQSKAPLFYDLRFLIAAEQSPLLNVSKIFYLLARDEGRLIALVPLYLQEFRSADPLGLLISSAKLSIESEERGLFSHIIHCTDTTIPTLSHDPSLYARIFDAITAIAQAELARYFCFLNVQDGVLLREAQRNGLNINYMVDKFSIELDAFPDFDSFAQALPKYRRYEMVRQLRIFNRSDAKVRILAPPFDNEIEKLARLYYLTTQRLGTPYYWPESQLAVFCRLCGDLVRLIVVEQNGQIVSGFICFEEDGALHFWSAGMDDESSDFSPYTLGVSAVYRYAFEKGINLIECGRLNSHIKTRLGFKPKRLYSIVSQDLGIPAATQTSLSQLKLASQLDGEVRLASHPAFDEWYLTSVWNGRGPTRRPAGIVRAATEADVIRTIVFAKERGMEVSVRGSGHNYVGCFLRVDTLMLDISGLKGLDIDSRHKRAIVESGVSSGQLCHALAAKGLAFPTGHVKEVGISGFLLGGGLGINCSQWGGMSVFNVQALDIVTADGHLRHVSETQEPDLFWAARGAGPCSFFVVTRFYLSCYSLPRVITNSLYTLPFTYLHDLLARLEDASPPTNLQVMVSVSPPTSGDTPAVLLNILAFTDSPQEAQALCESFETRLELPLTALAINQPSNFETIYEQFSSMVVSKRFYADNILTDNTQELVSILSRYLSDAPSRGALTTIFWRGVTTYPQAAFSAHGKFFVSTYAQWDDAKDDSVNKYWLKRMYDELQEIARSRYINEYDLETRAGETSKCFAAENWERLQRLRLEYDPDGVFVDVQQLEEHGDQPGANN
>NC_010159.1|WP_001297096.1|3123667_3124447_+|AAA-family-ATPase
MMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE
>NC_010159.1|WP_000255944.1|3122645_3123668_+|IS21-like-element-IS100-family-transposase
MVTFETVMEIKILHKQGMSSRAIARELGISRNTVKRYLQAKSEPPKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIRSLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVLGYSRMLYIEFTDNMRYDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFSPRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGITVDVETANRHGLRWLHDVANQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHLDENLVNFDKHPLHHPLSIYDSFCRGVA
>NC_010159.1|WP_002224087.1|3118409_3120629_-|pentapeptide-repeat-containing-protein
MRIIRPQQLVVLKSSYQIGHESHMGISVVAGCYLSKPEHMVTESQIWQAWKAAPLSFRMLDSAEPKPFAEFLLAGHAGIGEEVTSLSAEVSVGSLTRRWCIEGESNKTGLVIKPFLRMSMDHTQSWGGKGCKENPLGRGYNDERKPTIMSLGLDGSAIVRSPLASPSPVPHDFQLRKVHINEVASTMTDPQYLETFYPGLPPQIDRRYFQMAPPGQWLKKSAWPDSVPFKLIGFRPDNEEISGAFPAVSARAFVWDNPSAPPSEVTLLRKTLWLLPDNDMGLMVFTGSVPLTHLFDEPIDTLLVGLDDSHSLRELEYYQQVYKSRSVEGAASFEFLKDPELMPEGMPLNVIRDLADHPDSLRYSASAMSEAESERFYQDVQDAIDRQEQQKSEEQETLGDLNVPAAGKEEAGTQWLESKEDTATNVTFLGTDFSGMTLDNKQFRYCMFTGCHFDKATFKDCTFEHCQFTQSDFENSRWNNVHLSGCLFKQAEWQKAAFTHCKWEKSTFEYGVFKHAQFTDNALDNCLINHSDFSLGTFDHCTLNGCFFSETHCDQTQFNQVIITSCIFEKCDGPKACFTESTIEKTSFISSSWVGGRLSHCYLNSLTTGLNTNLSESHFEQCSLNKMGFLKVNLQSSTFINCSMLESCCDKADFSQATLIACDMTAVRLKDANLVHSHWQNTSLQQSMFYNADLRDATFQRCNLAGANLAMISQNMDTRFEHCLTEKTHWIPRRYTVPA
>NC_010159.1|WP_002214739.1|3117280_3118384_-|pentapeptide-repeat-containing-protein
MTPSDTPIMPPDSPRRIIGRHFTQRQLQQLTLSEVYFIQCTFTDISFAEIAVRNIHFESCHFTHLRLDGGRVENCSFRFCKFNDVSAQGVSILNTSCIEVQWQGCYLTGCLIERWLLTSCQLDDAQLQDIQLNYWTVQDTPMTHLTMSDSKMQDSSWHGCTIQQSVWKNSELIRQVMGSCVLKECQYQAIQSDTVVWSQCQLEQVDFRHQPLENSNFHKSTLTQCGFSDANLAAALFSEATLEGCDFNMAQLAAAQFVDATLRDCNFDTADLQNASLLRANLTRCHLTQVNLTKADLRSCMLSESSLQASKLSKTRIHGAQIPTLDTPLQMPDPLLSQIDNWYGHHQPGPKNNPKFPSIPSGASRYV
>NC_010159.1|WP_002210473.1|3116670_3117288_-|DUF3540-domain-containing-protein
MSRLTTLLKPKNSLPGYLSYSPRTPLPAVSAPPQVITAKVIRPGNASVSLLGYETLPVTTASSCLFQPENGDLVSAVIDQQQIYITAILYRTSPDAPLVMNSGEVPLHLVTTALEIHSPDRVEIHTRHFSLLTRTTLWVAKTMHQVADSLFVRAKQASREVENTDDVHARHISQLADQSLMINSRIGSLNASAVLKIDGGQVHMG
>NC_010159.1|WP_002214737.1|3116299_3116665_-|DUF4150-domain-containing-protein
MTAANTRAGGISFIGSDPMIPISAPNTAPNANGIPNVSNYFCCGGNEQNLNTIRPATIDGGSVMGAASGTHSAKMDPMQGSGKYFIQGSPATRLGDMSMTNNYNAPSTQIAPSQTKYFVNA
>NC_010159.1|WP_002210471.1|3115815_3116307_-|type-VI-secretion-system-lipoprotein-TssJ
MRSLFRVLPIFILTGCVLLSGCSWFSSSSEAALQKRRIDLQVVAAPLINPGPNGQAQPLKVCIIELNKEGWSPPGLYQGTLCSGISVGGEVVSVTEYILAPTEVRQYSRDVPFEQERWWAIAAEFQEMSNGKSLLTLKSDARADFNRVVLVDGKALSLKASTK
>NC_010159.1|WP_012229833.1|3112746_3114354_-|DotU-family-type-IV/VI-secretion-system-protein
MNEFERQIRAAISAARNGAKHAEQSLTTPMWQAKSTVASLGGIVPRSGSSSTSQAENYKEGLADQAASGNNMARTSAPPVTLYQQQPNANDSYPNGNNNNPNGDNNNPNGSNNNIARVQRMPHGISRGLYERPGMLLGAWDNAYIAAAMPLLLVENIRSWPTRNAAEVRPPIVRELQYFQQHLQKKNYPQEDINHLSYLLCTYIDGIFNGLQTPDSYNQSLLVEFHRDAWGGEDCFEHLRVYMNSPKQYREVLEFYDLIMCLGFDGKYQMIEHGAVLLMDLRSRLHTQLYGQDATQSLAIAQAVKGSPRRQYIKALKIFTYGFALCLCAYGVTAWYLHQQSQQIRSNILTWVLPEPRKINIMETLPNPLSNILNEGWLEVRKDPRGWLLIFTSDGAFRTGEATLSEEFINKKNIERLGLALAPWPGDIEVIGHTDNKPFRSTSGNNNLKLSAARASVVADKLRESTQINETHQREISAIGRGESDPLADNATEEGRKRNRRVDILWKIGQRDADKAMKQFLENPTPEVQGTNTQQ
>NC_010159.1|WP_002213036.1|3129289_3129508_+|hypothetical-protein
MYLLQQIELCPDQILHAWKISQNPQVSEVFEIEVVSSEEDAEEAVLFWKAYFSSLGETVIDGRHVGDTFSRF
>NC_010159.1|WP_002231245.1|3129872_3130295_+|beta-hydroxyacyl-ACP-dehydratase
MIPHREPFLMVDNVELINIECRLIKAIRRVDEKDPVFGGHFPNDPIYPGVLQQESMFQTALILMYFLLNETAIPPAEENIIHAVGTRVYDVFHLSAVRPGELMTIRCCITEYDTFLATAIVQITVNDQIVTVGKGEFHVF
>NC_010159.1|WP_012229841.1|3130284_3131568_+|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein
MSSDRIVITGVAINTPIGDTLDLVGNNLLSGKSAIGYWRNFDTSNIYSKIGGQIPEYDIEGKLHAFSNRIPDIVLSRAEKVFKQTTKGVQLSVLMAMEAWLDAGLFEHIIDPFDCGIICGGHNLSDKYLLDQQKIFSDEPEFIDAFSGLNSLDTDHSSSVAQVLNTKGFAYLVGGTCATGNIAIQTAINAIKVDKKQVVAVVCPMASFHPMMLHSLTILEAICYSQYQDTPTKASRPYDINRSGFLPSEGGAVLIFEQAEHAKNRGAKIYAELLGASVNSDANYLGDPSHEGQVRVIQDVLKKCNISPEQVDYVSAHATSTKLGDIVELKSIKRVFGSHAEKLIINAPKSLLGHTMWASGVVEAAIAIWQMRQGEFHQSHNIETLDPAVELNVCASGNVKKEVNIFLNNSFGMGGINSASLFSRYHG
>NC_010159.1|WP_002213030.1|3131569_3132307_+|SDR-family-oxidoreductase
MNLFISGGASGIGRSVVIAALSKGWNVGFSYHNNKEGAQQLLDIAVAEFPRQLCRAYQLDVIDSGAVEYVGDRLLVDFSNIDAVVCNAGIDLPGNLVSMTDEDWALVLNTNLTGTFYLIRYFLPLFLANKYGRIVTLSSLAKDGSSGQAAYAASKAGLVGLTKTTAKEYGHFGITANVVVPGLINTEIIGDDIKGIKNFFAQYAPVGRLGSPSEVAEAILFLVAKESSYVNGAVFNVTGGIDWVY
>NC_010159.1|WP_041854810.1|3132332_3133562_+|hydroxymethylglutaryl-CoA-synthase-family-protein
MGIEKISIYPSSLALKLSELAQARGGDNKYIQESLMVIKRSLVPQWEDAVTLAVNSAKDMLNDQDRSDIGLFIIATESGLDQEKAISTWAHRYLGLPATCRVFELKSACHAGAAALKMAESWISSGLNRGKKVLLINVDISNNMICHGKMEYSLGAGAIALLISDNPVFAVIETGKSGIHTHEVTDVIRPLPWKEVAFDVEASLFSYMDGLENAFEEYCHQTPEARESTYFNYNLYHVPFPGISKEAHKVLLELQGLFGKEALATSFKQKVMPSLYYAQKIGATYCGSIFLSLFSLMVKAPEIKSGDRIGVYSYGSGSCAEYFSMQVGDQAVEIAQQQGAALDILLTQRKILDVAAYEQLENARSAQMQGKDYRLDGDNLQDWYTHHYSGSGLLILERIDNHLRRYRYA
>NC_010159.1|WP_002213026.1|3133554_3134274_+|enoyl-CoA-hydratase/isomerase-family-protein
MHEYVTVPIKFSPDSLADFENRFISALNDERYKVIVLIGGPTYFSMGMDLTYISTHYDADFVSQFCHILKMVRNSHKPVLAKVEGNVIAGGLALLSVVDFILSSDSASFSLPEVTFGITPTIAMSCLLERIRPHHLKYFVWSSSVISAKQALKWGLIDQINTLENLDQDIQVISNKLSRIPKSAIRESKLLLAEQYSFEESLDLGSHLLVERLNDAQTIEKIRHYLEDIKLFNDEYADD
>NC_010159.1|WP_012229846.1|3134275_3135028_+|enoyl-CoA-hydratase/isomerase-family-protein
MKKIYLRKSDEGIAFMHINDPVNKNAIDDEFCLQLHGIVDTIKQDKTIKVLILVGLPDIFCTGGTEAFLQSLITHYKTNIEHEYANHLKHFLNIPIPVIAAMEGSATGGGLVLGLYADILVAAEESRYGMSFMNMGFTPGMGSTAMSKEAFGYYTGFEMMVTGNYIRGSELKGKCCFNYILPRAMVMEKAIELATSIAEKPRHSLDLLKKYMSIDRRKMLEETSTIEAFMHHIAFNQSNIEQQIQDNYTG
>NC_010159.1|WP_002213024.1|3135030_3135819_+|SDR-family-oxidoreductase
MLNNLSEMTVLVTGGTKGIGRATVESFVKAGAKVYGTYFWGDNLDELENHFSQYLNRPVFLQADISDEEITTQLIEKIAQENKKIDILILNAAFAPQFKDTYKFRGLLDSIEHNSWPLITYIDCIKQHFGQYPGYVVAITSEGHRSCHITGYDYVAASKAVLETLTKYIGARENIIINCISPGVVDTEAFELVFGKKAQAFIRKFDPDFIVSPEAVGNVSVALCSGLMDAVRGQVITVDNGRMFTDNFTKWIDMIETNFIEK
>NC_010159.1|WP_002228570.1|3135905_3136346_+|lipocalin-like-domain-containing-protein
MSNPNRNLFLGRWKLESCIGNSGGIHIYPIGREPFGMLIYTEQYMMVFISSVERTQFSTEDIRAIPSEQIVADFPKFETYCGHYIVNHDEKIVTHFIDNSKIPNQIGTQFRRYFSFEHEKLVLKSIDSLLLNDESWLFELVWNKQE
>NC_010159.1|WP_002213017.1|3136383_3136632_+|acyl-carrier-protein
MDRDHIASIVKKHIVNSIDGAKEHEIDLQKSMADYGASSLDIVSVVSGVMRELKIKIPRTELKNIKSINGLIDLFVTSSSES

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Crispr_ID: NC_010159_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010159_3

3684298-3684400

Orphan

Consensus_repeat	Method
TTACAACGCGCAATTTCTGTGTTTCGCGCACAGCAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010159_3

>merge|NC_010159|3|3684298-3684400|CRISPRCasFinder
TTACAACGCGCAATTTCTGTGTTTCGCGCACAGCAAAACCCCACGTTTTTGGCATGGGGTCATCATTACAACGCACAATTTCTGTGTTTCGCGCACAGCAAAA

>NC_010159|3|3|3684298-3684400|CRISPRCasFinder
TTACAACGCGCAATTTCTGTGTTTCGCGCACAGCAAAA	CCCCACGTTTTTGGCATGGGGTCATCA
TTACAACGCACAATTTCTGTGTTTCGCGCACAGCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010159.1\|WP_002209471.1\|3692797_3693529_-\|polyphenol-oxidase	unknown	unknown	gnl\|CDD\|182677
NC_010159.1\|WP_041854827.1\|3696423_3696882_-\|IS200/IS605-like-element-IS1541A-family-transposase	unknown	unknown	gnl\|CDD\|224854
NC_010159.1\|WP_002208745.1\|3673921_3675094_+\|multidrug-efflux-MFS-transporter-periplasmic-adaptor-subunit-EmrA	unknown	unknown	gnl\|CDD\|185090
NC_010159.1\|WP_002208744.1\|3673025_3673538_+\|transcriptional-repressor-MprA	unknown	unknown	gnl\|CDD\|182795
NC_010159.1\|WP_002231132.1\|3693530_3694508_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NC_010159.1\|WP_002228330.1\|3697164_3698322_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	unknown	unknown	gnl\|CDD\|182594
NC_010159.1\|WP_002209465.1\|3698426_3699548_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|183035
NC_010159.1\|WP_002216643.1\|3678208_3678646_+\|thioredoxin-TrxC	unknown	unknown	gnl\|CDD\|182889
NC_010159.1\|WP_002208751.1\|3682425_3683781_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|236510
NC_010159.1\|WP_002217405.1\|3690094_3692668_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|182791
NC_010159.1\|WP_012229947.1\|3676790_3677957_-\|tRNA/rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|236779
NC_010159.1\|WP_002208752.1\|3683842_3684184_+\|YfiM-family-lipoprotein	unknown	unknown	gnl\|CDD\|182705
NC_010159.1\|WP_002209468.1\|3695729_3696092_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|182378
NC_010159.1\|WP_002208743.1\|3672512_3672854_+\|L-valine-transporter-subunit-YgaH	unknown	unknown	gnl\|CDD\|182434
NC_010159.1\|WP_002208746.1\|3675132_3676668_+\|multidrug-efflux-MFS-transporter-permease-subunit-EmrB	unknown	unknown	gnl\|CDD\|129794
NC_010159.1\|WP_002223245.1\|3700863_3701580_+\|two-component-system-response-regulator-BtsR	unknown	unknown	gnl\|CDD\|236956
NC_010159.1\|WP_002208749.1\|3678815_3679565_+\|DTW-domain-containing-protein	unknown	unknown	gnl\|CDD\|225690
NC_010159.1\|WP_002223249.1\|3679607_3682250_+\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223972
NC_010159.1\|WP_002209469.1\|3694643_3695375_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|182792
NC_010159.1\|WP_002228238.1\|3699560_3700631_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237190

Protein	Function_ID	Function_description	E-value
NC_010159.1\|WP_002209471.1\|3692797_3693529_-\|polyphenol-oxidase	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	3.316e-179
NC_010159.1\|WP_041854827.1\|3696423_3696882_-\|IS200/IS605-like-element-IS1541A-family-transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.36021e-44
NC_010159.1\|WP_002208745.1\|3673921_3675094_+\|multidrug-efflux-MFS-transporter-periplasmic-adaptor-subunit-EmrA	gnl\|CDD\|185090	PRK15136, PRK15136, multidrug efflux MFS transporter periplasmic adaptor subunit EmrA.	0
NC_010159.1\|WP_002208744.1\|3673025_3673538_+\|transcriptional-repressor-MprA	gnl\|CDD\|182795	PRK10870, PRK10870, transcriptional repressor MprA; Provisional.	2.15273e-109
NC_010159.1\|WP_002231132.1\|3693530_3694508_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	0
NC_010159.1\|WP_002228330.1\|3697164_3698322_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	gnl\|CDD\|182594	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional.	0
NC_010159.1\|WP_002209465.1\|3698426_3699548_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	gnl\|CDD\|183035	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional.	0
NC_010159.1\|WP_002216643.1\|3678208_3678646_+\|thioredoxin-TrxC	gnl\|CDD\|182889	PRK10996, PRK10996, thioredoxin 2; Provisional.	1.74338e-103
NC_010159.1\|WP_002208751.1\|3682425_3683781_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|236510	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase.	0
NC_010159.1\|WP_002217405.1\|3690094_3692668_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|182791	PRK10865, PRK10865, ATP-dependent chaperone ClpB.	0
NC_010159.1\|WP_012229947.1\|3676790_3677957_-\|tRNA/rRNA-methyltransferase	gnl\|CDD\|236779	PRK10864, PRK10864, putative methyltransferase; Provisional.	0
NC_010159.1\|WP_002208752.1\|3683842_3684184_+\|YfiM-family-lipoprotein	gnl\|CDD\|182705	PRK10759, PRK10759, YfiM family lipoprotein.	3.48862e-55
NC_010159.1\|WP_002209468.1\|3695729_3696092_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|182378	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA.	2.10049e-56
NC_010159.1\|WP_002208743.1\|3672512_3672854_+\|L-valine-transporter-subunit-YgaH	gnl\|CDD\|182434	PRK10408, PRK10408, L-valine transporter subunit YgaH.	1.37511e-59
NC_010159.1\|WP_002208746.1\|3675132_3676668_+\|multidrug-efflux-MFS-transporter-permease-subunit-EmrB	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	0
NC_010159.1\|WP_002223245.1\|3700863_3701580_+\|two-component-system-response-regulator-BtsR	gnl\|CDD\|236956	PRK11697, PRK11697, two-component system response regulator BtsR.	1.49411e-161
NC_010159.1\|WP_002208749.1\|3678815_3679565_+\|DTW-domain-containing-protein	gnl\|CDD\|225690	COG3148, COG3148, Uncharacterized conserved protein [Function unknown].	1.34889e-124
NC_010159.1\|WP_002223249.1\|3679607_3682250_+\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	0
NC_010159.1\|WP_002209469.1\|3694643_3695375_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|182792	PRK10866, PRK10866, outer membrane protein assembly factor BamD.	3.4139e-180
NC_010159.1\|WP_002228238.1\|3699560_3700631_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237190	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional.	0

>NC_010159.1|WP_002208752.1|3683842_3684184_+|YfiM-family-lipoprotein
MRLHIYLRRLLIAPLLLLTSACTHVANDSWTGKDKAQHFFASAALAAAGTAYGEHQNWSDAKSRNFGLLFSIGIGAGKEWYDSRQAGTGWSWKDFTWDIAGAITGYSLYRAAN
>NC_010159.1|WP_002208751.1|3682425_3683781_+|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MLSKFKRSKHQQHLAQLPKLPQSVDDVQTLYCPKVFRSTLLELIAQATKRIFLVALYLEQDDAGRDVMNALYQAKQSHPELEIYVLVDWHRAQRGRIGAAAVNTNADWYCDMAAKHPNISVPVYGVPVNTREALGVLHLKGFIIDDTVIYSGASINDVYLYQNDKYRYDRYQLITNPSLATIMVDYVKQRILSAGAVQRLDRNDRPTTPEIKNETRQFRSSLRDASYQFSAQAHNDELAVTPLVGLGKKSLLNKTIHHLMASADERLTICTPYFNLPALLVRNIIYLLREGKQVEIIVGDKTANDFYIPEDQPFKIIGALPYLYEINLRRFLSRLQPYVDNGQLIVRLWKDGDNTYHLKGMWVDNNWQLITGNNLNPRAWRLDLENAILIHDPKHEMHEQRAKELECIRTHTKVVSHYLELENIQQYPVKVRKLIRRLRRIRIDRLISRIL
>NC_010159.1|WP_002223249.1|3679607_3682250_+|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase
MSQRGLEALLRPKSIAVIGASEKPERAGFLMMRNLLDGGFNGPILPVTPNHKAVCGVLAYANIASLPITPDLAILCTHDCRNLTLLEDLGNRGCKAAIILSAAPEQFPELKACAQRHHMRLLGPNSLGLLAPWQGLNASFSPVPIKKGRLAFISQSAAVANTILDWAQQREVGFSYFIALGDSLDIDVDDLLDFLARDSKTSAIMLYIEHISDARRFLSASRSASRNKPVLVVKSGRSQRAQQLLNGQQGLDAAYDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGERLLIVSNGSAPAAMALDELIRRNGKLATLSDATQSALSEALPPFVALRNPIDLRDDASAERYLAALKPLLDSSDYDTLLLIHSPSAAAPGGKTAELLISAIRQHPRGKRITLLTNWCGEYSSQDARRLFTEAGIPTYRTPEGAITAFMHMVEYRRNQKQLKETPALPIGLTANTAHVHQLIRQALAEGATQLDTHEVQPILEAYGLRTLPTWIASDSVEAVHIAERLGYPVAIKLRSPDIPHKSEVQGVMLYLRTAIEVQRAADDILDRVKRTYPQARIHGLLVQSMANRAGAQELRIAVEQDAIFGPLIMLGEGGIEWHHETQAAVALPPLNMVLARYLIIQAVKGGKIRSRGSLQPLDIPGLSRLLVQVSNLILDCPEITRLDIHPVLASGSEFTLLDVSMQLAPVTGDPQARLAIRPYPHELEEKVTLRDNSQCLFRPILPEDEPLLKLFIDQVTKEDLYYRYFSEINEFSHDDLANMTQIDYDREMAFVAVRQNSEGPEIIGVTRAFSDPDNIDAEFAVLVRSDLKGLGLGRALLEKMIRYARSHGLSRLTAVTMPNNRGMIGLAQKLGFTIDVQIEDGIVNLELTL
>NC_010159.1|WP_002208749.1|3678815_3679565_+|DTW-domain-containing-protein
MTDTFTTGHTLPTAITTENAVLRLRQQRLAAATRAYRARGCRAIRCQSCLLAERFCLCDTIKPQQANSRFCLIMFDTEPLKPSNTGRLIADILPDTHAFLWARTEVDPELLAAISDPLRQPYVVFPEAYAEPERQVINQLPISDKPPLFILLDGTWTEAKKMFRKSPYLAGLPLLSLQVSHLSDYQLREAQRPEQHCTVEVATALLHQAGDIQAAEGLRDHFHYFRQQYLAGKPHHPVGRVTASHEENA
>NC_010159.1|WP_002216643.1|3678208_3678646_+|thioredoxin-TrxC
MNTVCTACMATNRLPEERIDDGAKCGRCGHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMIDMLNGAVPKAPFDNWLDEQLSRDPNS
>NC_010159.1|WP_012229947.1|3676790_3677957_-|tRNA/rRNA-methyltransferase
MNDSFSGKNGKVKVMYVRSDESSDDRNSSNHDNRNNSSRDNSNRDNNGRGRSQRPAGNGRPGDNARQGDNTRQGNAPRNNDSRRPDSGRNERDRPSRPARSEGSSPYDSPWKTVSRAPSEEPEFDHGGISGKSHIDPAQLRRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEEDELAKASGTEHHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSAQG
>NC_010159.1|WP_002208746.1|3675132_3676668_+|multidrug-efflux-MFS-transporter-permease-subunit-EmrB
MAQKPLEGAPLAWMTVALSLATFMQVLDSTIANVAIPTIAGDLGSSNSQGTWVITSFGVANAISIPVTGWLAKRVGEVRLFLWSTGLFVLASWLCGMSNSLGMLIFFRVIQGLVAGPLIPLSQSLLLNNYPPAKRSMALALWSMTIVVAPIFGPILGGYISDNYHWGWIFFINIPIGLVVVLLAGSTLKGRETKTEIRPIDTIGLVLLVVGIGALQIMLDQGKELDWFNSTEIIVLTVVAVVAITFLIVWELTDDHPVIDLSLFKSRNFTIGCLCLSLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGILPVLLSPLIGRFAHRIDMRQLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFFQGFAIACFFMPLTTITLSGLPPERMAAASSLSNFMRTLAGSIGTSITTTLWTQRESLHHAQLTEFVNPYNPNATQAYQELEKLGMSQQQASAYLAREITNQGLIISANEIFWLSAGVFLMLLALIWFARPPFTSGGGGGGAH
>NC_010159.1|WP_002208745.1|3673921_3675094_+|multidrug-efflux-MFS-transporter-periplasmic-adaptor-subunit-EmrA
MSESAGAQAPQRPQNKKQQRKRVLLLLTAIFIMIGVAYLIYWFLVLRHHQETDNAYISGNQVQIMSQVPGSVVSVHFENTDFVKSGDVLVTLDPTDAEQAFEQAKTALANSVRQTHQLIINSKQYQANIALKKTELSQAQNDLKRRVVLGAAAVIGREELQHARDAVEAAQASLDMAVQQYNANQALVLNTPLEKQPAIEQAAAKMRDAWLTLQRTKVVSPISGYVSRRSVQVGAEISSGTPLMAVVPADQLWIDANFKETQLANMRIGQPATIVTDFYGDDVVYQGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIALDEKQLKEHPLRIGLSSLVKVDTANTDGHVLAQNVRKEPAFMTNALSLDFAPVNQIISDIIHANAD
>NC_010159.1|WP_002208744.1|3673025_3673538_+|transcriptional-repressor-MprA
MESSFSPIEQMLNSRAKRQKDFPYQEILLTRLSMHMHSKLLENRNKMLKAQGINETLFMALITLDAQESRSIQPSELSAALGSSRTNATRIADELEKKGWIERRESHNDRRCLHLHLTEAGIEFLHQLLPPQHKCLHFLWSTLTEQEQQQLEMLTRKLLTRLDQMEISEQ
>NC_010159.1|WP_002208743.1|3672512_3672854_+|L-valine-transporter-subunit-YgaH
MNTDILMIGLVVGTVNYLFRYLPLRFGPARKQTGLLRGKMSLLLDSIGIASICALLVVSSTPEIIHHPQKLLPTLIGFLVICGCFYKTNSIIFATLLGALCYGLTFKLLTILG
>NC_010159.1|WP_002217405.1|3690094_3692668_-|ATP-dependent-chaperone-ClpB
MRLDRLTSKFQLALADAQSLALGRDNQFIEPLHLMSALLNQDGGTVRPLLTSAGINVARLRSDIEQALGRLPQVEGTGGDVQPSNELVRVLNLCDKLAQKRSDKFISSELFVLAVLEDRGTLTDMLKAAGATVAIIDKAIETMRGGDKVDDQGAEDQRQALKKFTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKHKRVLSLDMGSLIAGAKYRGEFEERLKGVLNDLSKQEGSVILFIDELHTMVGAGKGDGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVYVAEPTVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAGSSIRMQMDSKPESLDRLERRIIQLKLEQQALKKESDDASKKRLEMLNTELEQKEREYSELEEEWKAEKASLTGTQNIKTELEQAKITLEQARRVGDLARMSELQYGTIPELEKQLAAATALEGKTMKLLRNRVTEIEVAEVLARWTGIPVSRMLESERDKLLRMEQDLHQRVIGQDEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALATFLFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQEHFGQMNYSEMKTVVMDVVSHHFRPEFINRIDEVVVFHPLGRAHLASIANIQLERLYKRLEERGYEVKITQPALEFLGEAGFDPVYGARPLKRAIQQEIENPLAQQILSGKLIPGIPVTLDVENGHIIAKQ
>NC_010159.1|WP_002209471.1|3692797_3693529_-|polyphenol-oxidase
MSTLILPDWPMPARVRACSTTRHGGVSVSPYDSLNLGTHVGDVATHVDANRQLLREQACLPQMPVWLDQVHGTRVLTLEGRSVSNTQADAVYSRVVGQVCAVMTADCLPVLFCSLAGDEVAAAHAGWRGLCSGVLEHTVAQFNAAPSSLMAWLGPAIGPQQFEVGEDVKQAFISIDAKSALAFTPFGSKYLADIYLLARLRLQAAGIQAIYGGNRCTVTEKQQFFSYRRDGITGRMASLIWLI
>NC_010159.1|WP_002231132.1|3693530_3694508_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MAQQVQLSATVAESQLGQRLDQALAELFPDYSRSRIKEWILDSRVTVNGKKINKPKEKVLGGELVAIDAQIEEDARWAPQEIPLDIVYEDNDILVINKPRGLVVHPGAGNPDGTVLNALLHYYPEIMDVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGNMTAGGRVDEPISRHSTKRTHMAVHPMGKPATTHYRIMEHFRAHTRLRLRLETGRTHQIRVHMSHINHPLVGDQLYGGRPRPPKGASDSFIAILRGFDRQALHATMLRLYHPISGIQMEWHAALPEDMVELINALKADTEEFKDQMDW
>NC_010159.1|WP_002209469.1|3694643_3695375_+|outer-membrane-protein-assembly-factor-BamD
MTRMKYLVAAATLSLVLTGCSSNKDVVPDNPPSELYATAQQKLQDGNFKGAITQLEALDNRYPFGPYSQQVQLDLIYAYYKSADLPMAQASIDRFMRLNPTHPNIDYVLYMRGLTDMALDDSALQGFFGIDRSDRDPQHARAAFRDFNQLIQNYPNSQYATDAQKRLVFLKDRLAKYELAVAQYYTKRGAYVAVVNRVDQMMRDYPDTQATRDALPLMENAYKQLQLNAQADKVAKIIAANPA
>NC_010159.1|WP_002209468.1|3695729_3696092_+|ribosome-associated-translation-inhibitor-RaiA
MTVNITSKQMDITPAIRKHVEDRLTKLDKWQAQLINPHIVLSKEPQGFVADASISTPMGPLVASAKHDDMYAAINELITKLERQLNKVQHKGEARRAASSVKDANLESVDEEETESEPEQ
>NC_010159.1|WP_041854827.1|3696423_3696882_-|IS200/IS605-like-element-IS1541A-family-transposase
MRDEKSLAHTRWNCKYHIVFAPKYRRQVFYREKRRAIGSILRKLCEWKNVNILEAEYCVDHIHMLLEIPLKMSVSGFMGYLKGKSSLMLYEQFGDLKFKYRNREFWCRGYYVDTVGKNTARIQEYIKHQLEEDKMGEQLSIPYPGSPFTGRK
>NC_010159.1|WP_002228330.1|3697164_3698322_+|bifunctional-chorismate-mutase/prephenate-dehydratase
MTDNPLLVLRERISALDLKLLALLAERRELAVDVAKAKQLHHRPIRDKERERDLLDALIDAAKPYNLDGFYVTRLFQLIIEDSVLTQQALLQHQLNQTALLSARIAFLGPKGSYSHLAARQYAARHFEQLIECGCLKFQDIFTQVETGQADYAVLPIENTSSGSINDVYDLLQHTSLSIVGEITNPIEHCVLIATETDLNKIETVYSHPQPFQQCSQFINRFPHWKIEYCESTAAAMEKVAGMKSPTAAALGSEAGGALYNLQVLEHNLANQQQNITRFIVLARKPIDVSEQIPAKTTLIMATGQQSGALVEALLVLREHGIIMTKLESRPINGNPWEEMFYIDVQANIRSEAMQKALADLTPITRSLKVLGCYPSENVVPVEPR
>NC_010159.1|WP_002209465.1|3698426_3699548_-|bifunctional-chorismate-mutase/prephenate-dehydrogenase
MVAELTALRDQIDEVDKALLDLLAKRLHLVAEVGEVKSRYGLPIYVPDREAAMLASRRQEAGALGVPPDLIEDVLRRVMRESYTSENDKGFKTLCPELRPVVIIGGQGQMGRLFSRMLNLSGYQVRTLEQEDWSQAESILADAGMVIVSVPIHITEEVINRLPKLPADCILLDLASVKNKPLQAMLAAHEGPVLGLHPMFGPDVGSLAKQVVVYCDGRDPQAYQWLLEQLQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSEDNLALIKRYYKRFGEALTLLEHHDKQAFVQSFEKVEHWFGDYAERFLVESRSLLRQANDNRQ
>NC_010159.1|WP_002228238.1|3699560_3700631_-|3-deoxy-7-phosphoheptulonate-synthase
MQKDSLNNVHISAEQILITPEELKNQFPLSENDQYSIERARKTIADIIQGRDPRLLVVCGPCSIHDVDAALDYARRLKKLSVELDDSLYIVMRVYFEKPRTTVGWKGLINDPAMDGSFDVEAGLHIARRLLLDLVGMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVGFKNGTDGSLGTAINAMRAAAMPHRFMGINQSGQVCLLQTQGNPHGHVILRGGKTPNYSAQDVAQCEKQMQDAGLIPSLMIDCSHGNSNKDYRRQVAVAESVVEQIKAGNRSITGVMLESHIHEGNQSSEQPRADMRYGVSVTDACINWESTETLLRGMRQELLAALTARTA
>NC_010159.1|WP_002223245.1|3700863_3701580_+|two-component-system-response-regulator-BtsR
MLRVIIVDDEQPAREDLRERLNEEHGIEIVAECSNALEAIPAIQRLQPDVVFLDIQMPRINGLELASMLNPESMPHIVFVTAYDEYAIRAFEEHAFDYLLKPLDHQRLAKTLTRLSRDLIVKNNLHKVIEPILRHIPCSGHNRIFLLKIEEVEYLSSELSGVHVVGTVQSGYTQLSLKTLEEKTPFIRCHRQYMVNTEQLGEIQLMDNGAAEVITRSGKHIPVSRRYLKSLKEKLGIA

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Crispr_ID: NC_010159_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010159_4

4143946-4144057

Orphan

Consensus_repeat	Method
AAAGCACATTTGAGCAGCGAGTGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010159_4

>merge|NC_010159|4|4143946-4144057|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAGCCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCCAAAGCACATTTGAGCAGCCGAGTGAA

>NC_010159|4|4|4143946-4144057|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAG	CCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCC
AAAGCACATTTGAGCAGCCGAGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010159.1\|WP_002223919.1\|4139352_4140516_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NC_010159.1\|WP_002209481.1\|4127453_4128257_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NC_010159.1\|WP_002212093.1\|4151172_4152084_-\|maltose-operon-protein-MalM	unknown	unknown	gnl\|CDD\|236716
NC_010159.1\|WP_002215335.1\|4137169_4137946_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239782
NC_010159.1\|WP_002209487.1\|4135629_4137003_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
NC_010159.1\|WP_002209489.1\|4138097_4139102_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NC_010159.1\|WP_002209484.1\|4131699_4132317_-\|heme-acquisition-protein-HasA	unknown	unknown	gnl\|CDD\|368907
NC_010159.1\|WP_002212097.1\|4149753_4150272_+\|Hcp-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
NC_010159.1\|WP_002212098.1\|4148732_4149230_-\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|226047
NC_010159.1\|WP_002221973.1\|4154779_4155016_-\|hypothetical-protein	unknown	unknown	unknown
NC_010159.1\|WP_002212092.1\|4152324_4153596_-\|maltoporin	unknown	unknown	gnl\|CDD\|236481
NC_010159.1\|WP_100067904.1\|4144266_4145621_+\|IS3-like-element-IS1661-family-transposase	unknown	unknown	gnl\|CDD\|222853
NC_010159.1\|WP_002209491.1\|4140889_4143526_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NC_010159.1\|WP_002230616.1\|4147183_4148665_-\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|226048
NC_010159.1\|WP_002212095.1\|4150423_4150702_-\|hypothetical-protein	unknown	unknown	unknown
NC_010159.1\|WP_002212100.1\|4146736_4147177_-\|type-VI-secretion-system-baseplate-subunit-TssE	unknown	unknown	gnl\|CDD\|226049
NC_010159.1\|WP_002209485.1\|4132538_4135031_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273807
NC_010159.1\|WP_002212091.1\|4153666_4154776_-\|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK	unknown	unknown	gnl\|CDD\|182893
NC_010159.1\|WP_012230143.1\|4129725_4131534_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NC_010159.1\|WP_002209482.1\|4128321_4129650_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902

Protein	Function_ID	Function_description	E-value
NC_010159.1\|WP_002223919.1\|4139352_4140516_+\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NC_010159.1\|WP_002209481.1\|4127453_4128257_-\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	1.51188e-39
NC_010159.1\|WP_002212093.1\|4151172_4152084_-\|maltose-operon-protein-MalM	gnl\|CDD\|236716	PRK10564, PRK10564, maltose operon protein MalM.	5.256e-172
NC_010159.1\|WP_002215335.1\|4137169_4137946_-\|acetylglutamate-kinase	gnl\|CDD\|239782	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).	2.52737e-136
NC_010159.1\|WP_002209487.1\|4135629_4137003_-\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
NC_010159.1\|WP_002209489.1\|4138097_4139102_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NC_010159.1\|WP_002209484.1\|4131699_4132317_-\|heme-acquisition-protein-HasA	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	9.51098e-102
NC_010159.1\|WP_002212097.1\|4149753_4150272_+\|Hcp-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	1.15477e-84
NC_010159.1\|WP_002212098.1\|4148732_4149230_-\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|226047	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	6.35023e-71
NC_010159.1\|WP_002212092.1\|4152324_4153596_-\|maltoporin	gnl\|CDD\|236481	PRK09360, lamB, maltoporin LamB.	0
NC_010159.1\|WP_100067904.1\|4144266_4145621_+\|IS3-like-element-IS1661-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.01643e-48
NC_010159.1\|WP_002209491.1\|4140889_4143526_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NC_010159.1\|WP_002230616.1\|4147183_4148665_-\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|226048	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NC_010159.1\|WP_002212100.1\|4146736_4147177_-\|type-VI-secretion-system-baseplate-subunit-TssE	gnl\|CDD\|226049	COG3518, COG3518, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	6.737e-48
NC_010159.1\|WP_002209485.1\|4132538_4135031_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	8.20794e-132
NC_010159.1\|WP_002212091.1\|4153666_4154776_-\|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK	gnl\|CDD\|182893	PRK11000, PRK11000, maltose/maltodextrin ABC transporter ATP-binding protein MalK.	0
NC_010159.1\|WP_012230143.1\|4129725_4131534_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NC_010159.1\|WP_002209482.1\|4128321_4129650_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.16318e-105

>NC_010159.1|WP_002209491.1|4140889_4143526_+|phosphoenolpyruvate-carboxylase
MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKSSRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPEALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPAFLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATDLFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLKGERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAETQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKQDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPDACVEQALMVTIAGVAAGMRNTG
>NC_010159.1|WP_002223919.1|4139352_4140516_+|acetylornithine-deacetylase
MKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADLGFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLTEHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAANTQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQLMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSDLNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYCTEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK
>NC_010159.1|WP_002209489.1|4138097_4139102_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKLLSDLHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQLALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEIVTHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQGVPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
>NC_010159.1|WP_002215335.1|4137169_4137946_-|acetylglutamate-kinase
MMNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAQKAEQLIAQGIITDGMVVKVNAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV
>NC_010159.1|WP_002209487.1|4135629_4137003_-|argininosuccinate-lyase
MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMTMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIAEAKARLF
>NC_010159.1|WP_002209485.1|4132538_4135031_-|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MDNIIRDKKTIISVNKITTCILFALVTQGYSGQLAANTAETPTNNNDMALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRCEQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
>NC_010159.1|WP_002209484.1|4131699_4132317_-|heme-acquisition-protein-HasA
MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQYPDSGYMSDAPMVDTVGVVDCHDMLLAA
>NC_010159.1|WP_012230143.1|4129725_4131534_-|type-I-secretion-system-permease/ATPase
MESCKTPGASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAPAIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQPVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHPWLGMLAAAGAGILVVLAWLNQWICKKPLHDASIITSHATQQANANLRNADVIEAMGMLKALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITAGVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQGKLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPTFSGTVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGAIDTAKVVAAAQLADVHDLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGEQALLASIIQLKQQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAVLQNIQGKDKPAVQPETKILNSRSGWSNGVSYGIGPARTTSSPKP
>NC_010159.1|WP_002209482.1|4128321_4129650_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLPESVCYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGHIAKNKLLEMESQSTSLQARVEQSTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPSGQPLFVEAQLPVELIDKVAVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYPLTVAIDLDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE
>NC_010159.1|WP_002209481.1|4127453_4128257_-|energy-transducer-TonB
MNRLQQSSDKLIFWLVGALLACGIHIYALWWLSTASIPAIPTSYPAAIMMELSAEPEFMQNLPQNSVVGITQNIIEPAVEQRVNQPDDIVDLPTLPEQPEGQREITRKEPIKVKRPAENRATSRKPVNKETQESDSKQSSPAAAASAMLSGTSQQVAAAVNSDSSHRQQAQVSWKSRLQGHLMGFKRYPSSARKQQQQGTAMIRFVVDKNGYVSSVQLSHSSGTSALDREALAIIKRAQPLPKPPAELLSQGQITLSLPVDFNLKRK
>NC_010159.1|WP_100067904.1|4144266_4145621_+|IS3-like-element-IS1661-family-transposase
MKHPFSTRLAAVQHYLSGKATLRETARQFSVGKSPLTRWIRAFRRQGEAGLEHHLSRTYTPEFRLCVVRYMMANRCSAADASAHFNIPNETIIQNWMKRYREGGKEALNPSKTGPTMPKDKYEHDSKPFSEMTHAELEKELEYLRAENAYPKKAESPERRKGTQGAAEKTRIVQALTAEHRLSCLLCAAKLARSTYYYHASKPDGVIDDYADAVKAIGALSRRHAQRYGYRRMTVALRKEGFTLNHKTVRKLMNQHGLLSLIRRKKYRSYRADGGRASDNLLARNFTSEISGLKWCTDVTEFRVGAQKLYLSVIQDLFNNEIISWHMSERAALILTCKTLEKALKVKGRKEGLMLHSDQGWHYRTPMWRSMLVEAGIRQSMSRKGNCLDNAVMENFFSHLKAEMYHRKKYDSATVLKRDIVEYIHYYNTERISLKTGGMSPAEYRTQVEKQ
>NC_010159.1|WP_002212100.1|4146736_4147177_-|type-VI-secretion-system-baseplate-subunit-TssE
MAALLNWDRGSSASLFDRIQGKGASSSSDGRLRELLNSIQKHLNEVLNSRPGACQSAVDLGVIDLNDATATSSDFRKSIEKAIKDCIENYEPRISAVTVQSLLNHGDPLQLSFHISARVNFDDMGDVVEFNIQLDNNRRYCFNQET
>NC_010159.1|WP_002230616.1|4147183_4148665_-|type-VI-secretion-system-contractile-sheath-large-subunit
MPLHEENTVLAAEPASATFLLDEIMSQTRMAPGNDGYDIAKQGVAAFISSILDTGTNEEPINKLLVDRMIIELDKKLSAQMDEILHANEFREIESSWRSLKLLVDRTDFRENIKINIMHATKEELLEDFEFSPEIIQSGFYKHVYSSGYGQFGGEPTAAIIGNYAFNNSSPDMKLLQYVSAVGAMAHAPFLSSVAPDFFGISSFTELPAIKDLKSVFEGPAHTKWRALRESEDSRYLGLTTPRFLLRLPYSTVENPIKNFNYYEDVSRNHEHFLWGNTAFLLASCLTDSFAKYRWCPNIIGPQSGGTVHDLPVHLYEAMGQIQAKIPTEVLITDRREFELAEEGFITLTMRKGSDNAAFFSANSVQKPKVFPNTREGKMAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDLERELNIWLKQYIADQENPPTDVRSRRPLRSAQIQVLDVEGDPGWYQVAMQVRPHFKYMGASFELSLVGRLDKE
>NC_010159.1|WP_002212098.1|4148732_4149230_-|type-VI-secretion-system-contractile-sheath-small-subunit
MSKNKQSSVAPKERINIKYVPNTGDQVAEIELPLNLLVVGDLKGVREETSIEERQVVSVNKNNFNSVMNEANISLSFNVPNRLEGDGEEDMPVALSIKGLDDFSPDNVAKKVPELKKILELREALVALKGPLGNIPAFRSRLQDLLGNEDMREQLLKELDILNQK
>NC_010159.1|WP_002212097.1|4149753_4150272_+|Hcp-family-type-VI-secretion-system-effector
MPTPAYISITGKTQGNITAGAFTAESVGNIYVQGHEDEMLVQEFEHIVTVPTDPQSGQPSGQRAHKPLRFTVAYNKAVPLLYNALASGEMLPTVELKWYRTSIEGKQEHFFTTKLEDATIIDIDCKMPHCQDSTKAEFTQLVRVSLAYRKINWDHTTAGTSGADDWRAPIEA
>NC_010159.1|WP_002212095.1|4150423_4150702_-|hypothetical-protein
MNFPNLLLLFSDGTLIKQVERELKTHLICNEFVKNKSKIVTVYITLGNDALLLIYYSNRVFYKKSYIKCGDIACMNYTVNEGYLTTEIILWR
>NC_010159.1|WP_002212093.1|4151172_4152084_-|maltose-operon-protein-MalM
MKKNLLSLCLVLALGGTAPLAVQAASTISPANVSIAPTISTTTLQQLPWQPLVPPVTQDIQLTAGSPHISQGEVEGAVAAFALPADRGSLEVTLSSLLTDKQLFTPSVLVLDEQMRPAAYYPSSYFTYEKAGIMINDRLQGVMKLTPALGQKQIYLLVYTTRDDLKKTTQLLDPAKAYAQGVGNAVPDIPDPIVNHSPTGTLRIKVTSEQGMGNIMIGLIQSAPTSAPVVVGSSIQPVAAPQSEPAKPAAPMLGETENYFNQAIKDAVKAGDVDKALKLLNEAEHLGSTSARKTFIGSVKGKG
>NC_010159.1|WP_002212092.1|4152324_4153596_-|maltoporin
MITLRKLPIALAVAAGVLSTQAMAVDFHGYARSGIGWTASGGEQQCFQTTGAQSKYRLGNECETYAELKLGQELWKEGDKSFYLDTNVAYSVSQRDDWESTDPAFREANVQGKNLIESLPGSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGLETIDLGFGKLSVAATRNSESGGSSAWIDNQRENAKYTINNVYDVRLAGLETNPGGSLELGVDYGRADTQEGYSLAPNASKDGVMLTAEHTQSLMGGFNKFVVQYATDSMTSYNTGHSQGTSVNNNGHLLRVIDHGAINLAEKWDMMYVALYQDIDLDNNNGNTWYSVGVRPMYKWTPIMSTLLEAGYDNVKSQHTGERNGQYKLTLAQQWQAGDSIWSRPAIRVFATYANWDEKWGYSDTTGVAQDGTIGTNSRGKNNEVTFGAQFEAWW
>NC_010159.1|WP_002212091.1|4153666_4154776_-|maltose/maltodextrin-ABC-transporter-ATP-binding-protein-MalK
MANVTLSSVYKAFGEAVISRDINLEIDDGEFVVFVGPSGCGKSTLLRMIAGLEDITSGELLIGGKRMNEVPPSERGIGMVFQSYALYPHLSVAENMSFGLKLAGVKKAEIYQRVNQVAEVLQLAHLLDRRPKALSGGQRQRVAIGRTLVSEPDVFLLDEPLSNLDAALRVQMRIEISRLHKRLERTMIYVTHDQVEAMTLADKIVVLDAGNIAQVGKPLELYHYPANRFVAGFIGSPKMNFLPVKVTAAEPRQVQIELPNHQRVWLPVEGDQVQVGANMSLGIRPEHLLPSSASEVTLEGEIQVVEQLGNETQIHIQIPAIRQNLVYRQNDVVLVEEGATFSIGLPPHRCHLFREDGTACKRLYQELGV
>NC_010159.1|WP_002221973.1|4154779_4155016_-|hypothetical-protein
MRLIITLLDQYVEALFNVQPYTQAATPSGATLPLAWRHGAQRESHQGTGGNQWVMPGFASTVFLHSDSYEKLFAQAKE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010159_1	1.4\|1783842\|29\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783842-1783870	29	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1847921-1847949	5	0.828
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	MK820641	Gordonia phage EnalisNailo, complete genome	34088-34119	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	MK878898	Gordonia phage Zameen, complete genome	34513-34544	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	MK919483	Gordonia phage Suscepit, complete genome	34514-34545	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	MK284520	Gordonia phage Lilas, complete genome	35799-35830	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	MK016492	Gordonia phage Bialota, complete genome	35265-35296	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	MK820642	Gordonia phage Polly, complete genome	33956-33987	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	NC_041883	Gordonia phage Attis, complete genome	31646-31677	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	MK814755	Gordonia phage Antonio, complete genome	34513-34544	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	MK875796	Gordonia phage Tayonia, complete genome	34513-34544	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	MK801734	Gordonia phage LordFarquaad, complete genome	31627-31658	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	MK433274	Gordonia phage Bradissa, complete genome	34554-34585	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	KU963257	Gordonia phage Kita, complete genome	34522-34553	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	NC_031251	Gordonia phage SoilAssassin, complete genome	31645-31676	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	NC_031097	Gordonia phage Zirinka, complete genome	35253-35284	6	0.812
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	NZ_CP005086	Sphingobium sp. TKS plasmid pTK2, complete sequence	138555-138586	6	0.812
NC_010159_1	1.4\|1783842\|29\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783842-1783870	29	NZ_CP050095	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence	167948-167976	6	0.793
NC_010159_1	1.4\|1783842\|29\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783842-1783870	29	NC_008381	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence	378214-378242	6	0.793
NC_010159_1	1.4\|1783842\|29\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783842-1783870	29	NZ_CP048284	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence	176172-176200	6	0.793
NC_010159_3	3.1\|3684336\|27\|NC_010159\|CRISPRCasFinder	3684336-3684362	27	NZ_CP026684	Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence	54795-54821	6	0.778
NC_010159_1	1.1\|1783662\|32\|NC_010159\|CRISPRCasFinder,CRT	1783662-1783693	32	CP049262	Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence	69636-69667	7	0.781
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	JF974294	Aeromonas phage pIS4-A genomic sequence	21965-21996	7	0.781
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NC_021534	Vibrio phage pYD38-A genomic sequence	3299-3330	7	0.781
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	440819-440850	7	0.781
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	282870-282901	7	0.781
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	KJ433975	Mycobacterium phage 40BC, complete genome	23231-23262	7	0.781
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	KJ433973	Mycobacterium phage 39HC, complete genome	23231-23262	7	0.781
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	NC_024145	Mycobacterium phage Hosp, complete genome	21427-21458	7	0.781
NC_010159_1	1.4\|1783842\|29\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783842-1783870	29	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	175906-175934	8	0.724
NC_010159_1	1.4\|1783842\|29\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783842-1783870	29	NC_012529	Deinococcus deserti VCD115 plasmid 2, complete sequence	307040-307068	8	0.724
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	MF679145	Escherichia coli plasmid pBJ114-96, complete sequence	37586-37617	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	60831-60862	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_CP021340	Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence	67671-67702	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_CP021336	Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence	67672-67703	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_CP040920	Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence	33435-33466	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_CP024832	Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence	33830-33861	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_CP024817	Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence	62769-62800	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	15616-15647	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_CP029117	Escherichia coli strain AR435 plasmid unnamed4	112580-112611	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_CP023961	Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence	16858-16889	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	AP023222	Escherichia coli M505 plasmid pM505-b DNA, complete genome	93734-93765	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	AP023233	Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome	47570-47601	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_CP019075	Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence	16520-16551	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_CP015837	Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence	3287-3318	9	0.719
NC_010159_1	1.2\|1783722\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783722-1783753	32	NZ_CP011063	Escherichia coli str. Sanji plasmid pSJ_98, complete sequence	37637-37668	9	0.719
NC_010159_1	1.3\|1783782\|32\|NC_010159\|CRISPRCasFinder,CRT,PILER-CR	1783782-1783813	32	NZ_JX627581	Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence	30496-30527	10	0.688

1. spacer 1.4|1783842|29|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 5, identity: 0.828

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
tcgtcaatgagttgcgcgacgttccctgg	Protospacer
**********.***** ********   *

2. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to MK820641 (Gordonia phage EnalisNailo, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

3. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to MK878898 (Gordonia phage Zameen, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

4. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to MK919483 (Gordonia phage Suscepit, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

5. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to MK284520 (Gordonia phage Lilas, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

6. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

7. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to MK820642 (Gordonia phage Polly, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

8. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

9. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to MK814755 (Gordonia phage Antonio, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

10. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to MK875796 (Gordonia phage Tayonia, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

11. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

12. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to MK433274 (Gordonia phage Bradissa, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

13. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to KU963257 (Gordonia phage Kita, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

14. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

15. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 6, identity: 0.812

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
gtcgtc-cgccgtgatcctgagcgcgctcgcga	Protospacer
 ***.* . ****** **********.******

16. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP005086 (Sphingobium sp. TKS plasmid pTK2, complete sequence) position: , mismatch: 6, identity: 0.812

tcgccattccgtgaacctgagcgcgttcgcga--	CRISPR spacer
tcgcctttccctgaacctga--gcgatcgtgacc	Protospacer
***** **** *********  *** ***.**

17. spacer 1.4|1783842|29|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050095 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence) position: , mismatch: 6, identity: 0.793

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
tcaagaatgaattgcgggaagttctggcc	Protospacer
**.  ************** ****.***

18. spacer 1.4|1783842|29|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NC_008381 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence) position: , mismatch: 6, identity: 0.793

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
tcaagaatgaattgcgggaagttctggcc	Protospacer
**.  ************** ****.***

19. spacer 1.4|1783842|29|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048284 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence) position: , mismatch: 6, identity: 0.793

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
tcaagaatgaattgcgggaagttctggcc	Protospacer
**.  ************** ****.***

20. spacer 3.1|3684336|27|NC_010159|CRISPRCasFinder matches to NZ_CP026684 (Nostoc sp. 'Peltigera membranacea cyanobiont' N6 plasmid pNPM2, complete sequence) position: , mismatch: 6, identity: 0.778

ccccacgtttttggcatggggtcatca	CRISPR spacer
gcaatcacttttggcatggggtcatca	Protospacer
 *   *..*******************

21. spacer 1.1|1783662|32|NC_010159|CRISPRCasFinder,CRT matches to CP049262 (Cronobacter sakazakii strain CS-09 plasmid pCsaCS09b, complete sequence) position: , mismatch: 7, identity: 0.781

tcaggggactggcgaacaatgtctttcatgat	CRISPR spacer
acgtcgcgctggcgaacaatctctttcatgat	Protospacer
 *.  * .************ ***********

22. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to JF974294 (Aeromonas phage pIS4-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

23. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NC_021534 (Vibrio phage pYD38-A genomic sequence) position: , mismatch: 7, identity: 0.781

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attacctgaatggcatttgctttatgcctgat	Protospacer
****.************* ****.   * ***

24. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

25. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.781

----tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cacctcgc----tcgggaacctgggcgcgttcgcga	Protospacer
    ****    .** *******.************

26. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to KJ433975 (Mycobacterium phage 40BC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

27. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to KJ433973 (Mycobacterium phage 39HC, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

28. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 7, identity: 0.781

-tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
cccgccg-cccgtgtacccgagcgcgttcgcgc	Protospacer
 .****. .***** ***.*************

29. spacer 1.4|1783842|29|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 8, identity: 0.724

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
tcgtcaatgaatggcgggatgtttttatt	Protospacer
************ ******.***.. ..

30. spacer 1.4|1783842|29|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NC_012529 (Deinococcus deserti VCD115 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.724

tcgtcaatgaattgcgggacgttccggcg	CRISPR spacer
gcgtcaaggaattgcgcgacgttcaaaac	Protospacer
 ****** ******** ******* ..

31. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to MF679145 (Escherichia coli plasmid pBJ114-96, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

32. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

33. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021340 (Escherichia coli strain 95NR1 plasmid p95NR1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

34. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021336 (Escherichia coli strain 95JB1 plasmid p95JB1A, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

35. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040920 (Escherichia coli strain FC853_EC plasmid p853EC1, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

36. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024832 (Escherichia coli strain CREC-532 plasmid pCREC-532_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

37. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024817 (Escherichia coli strain CREC-629 plasmid pCREC-629_2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

38. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

39. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029117 (Escherichia coli strain AR435 plasmid unnamed4) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat-----	CRISPR spacer
attatctgattggcagtttctttaac-----tgttta	Protospacer
********* ***** *******..*     *

40. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023961 (Escherichia coli strain FDAARGOS_448 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

41. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to AP023222 (Escherichia coli M505 plasmid pM505-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

42. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to AP023233 (Escherichia coli YJ4 plasmid pYJ4-b DNA, complete genome) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

43. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019075 (Escherichia coli strain CRE1493 plasmid p1493-4, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

44. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

45. spacer 1.2|1783722|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011063 (Escherichia coli str. Sanji plasmid pSJ_98, complete sequence) position: , mismatch: 9, identity: 0.719

attatctgaatggcattttctttggcgcagat	CRISPR spacer
attatctgattggcagtttctttaactgtttt	Protospacer
********* ***** *******..*     *

46. spacer 1.3|1783782|32|NC_010159|CRISPRCasFinder,CRT,PILER-CR matches to NZ_JX627581 (Methylobacterium oryzae CBMB20 plasmid pMOC2, complete sequence) position: , mismatch: 10, identity: 0.688

tcgccattccgtgaacctgagcgcgttcgcga	CRISPR spacer
ctaacgagccgtgaacctcagcgcattcgcgt	Protospacer
... *.  ********** *****.******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

58144 : 118754

Bacillus_phage(17.65%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|58144_58603_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002208996.1\|58845_59493_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_002208995.1\|59627_60224_-	nucleoid occlusion factor SlmA	NA	NA	NA	NA
WP_011566231.1\|60345_60804_-	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	6.0e-51	61.5
WP_002208993.1\|60781_61999_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	9.1e-46	34.8
WP_002208992.1\|62192_62861_+	DNA repair protein RadC	NA	NA	NA	NA
WP_002208991.1\|63123_63360_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_002208990.1\|63371_63539_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_002208989.1\|63621_64431_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	A0A127AWE5	Bacillus_phage	6.7e-21	32.7
WP_002208988.1\|64436_64916_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.0e-29	45.7
WP_002208987.1\|64912_65695_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_172601538.1\|65695_66970_-	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_002208985.1\|67392_68358_-	lipopolysaccharide heptosyltransferase RfaC	NA	NA	NA	NA
WP_002208984.1\|68357_69422_-	ADP-heptose--LPS heptosyltransferase RfaF	NA	NA	NA	NA
WP_002208983.1\|69452_70385_-	ADP-glyceromanno-heptose 6-epimerase	E3SL51	Synechococcus_phage	1.3e-31	36.6
WP_002208982.1\|70630_71842_+	glycine C-acetyltransferase	V5LQ39	Emiliania_huxleyi_virus	4.6e-34	27.6
WP_002208981.1\|71851_72877_+	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	8.0e-19	80.8
WP_002208980.1\|73972_75343_-	murein hydrolase activator EnvC	G9BW84	Planktothrix_phage	2.4e-10	35.7
WP_002208979.1\|75352_76900_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_002208978.1\|77296_77731_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_002208977.1\|77849_78098_+	glutaredoxin 3	V9QKN6	Rhizobium_phage	5.4e-14	50.0
WP_002208976.1\|78185_78662_+	protein-export chaperone SecB	NA	NA	NA	NA
WP_002208975.1\|78661_79681_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002208974.1\|79946_80768_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_002208973.1\|80890_81379_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_000255944.1\|82470_83493_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_012228794.1\|83492_84272_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.9e-138	99.2
WP_002208971.1\|84639_86016_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	1.5e-17	25.4
WP_002208970.1\|86012_86711_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	1.8e-06	29.5
WP_002208969.1\|86884_87373_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
WP_002353252.1\|88089_89010_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	8.6e-73	54.3
WP_002208967.1\|89571_90474_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
WP_002208966.1\|90691_91675_+	6-phosphofructokinase	NA	NA	NA	NA
WP_002208965.1\|91895_92885_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002218867.1\|93134_93911_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002208963.1\|94028_95456_-	anion permease	NA	NA	NA	NA
WP_002208962.1\|95521_96235_-	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase	NA	NA	NA	NA
WP_002208961.1\|96231_96969_-	PIG-L family deacetylase	NA	NA	NA	NA
WP_002208960.1\|97105_98341_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002208959.1\|98572_99340_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_002208958.1\|99468_100083_-	DUF1454 family protein	NA	NA	NA	NA
WP_002208957.1\|100251_100686_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_002208956.1\|101007_101754_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_041854751.1\|101908_102919_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_002218876.1\|103155_104679_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_002208954.1\|104855_105704_-	aquaporin family protein	M1HWZ0	Paramecium_bursaria_Chlorella_virus	3.2e-13	27.5
WP_002208953.1\|106331_106571_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_002213759.1\|106778_107237_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002230357.1\|107607_109722_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	2.8e-34	26.5
WP_002208949.1\|109714_111007_-	HlyD family secretion protein	NA	NA	NA	NA
WP_002215873.1\|111219_111459_+	hypothetical protein	NA	NA	NA	NA
WP_002228141.1\|112088_112673_+	DUF4232 domain-containing protein	NA	NA	NA	NA
WP_002208945.1\|112789_113275_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_002208944.1\|113416_114334_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_002208943.1\|114569_115901_-	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.2e-43	29.8
WP_002208942.1\|115971_116496_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_002208941.1\|116595_117441_-	cell division protein FtsN	NA	NA	NA	NA
WP_002213775.1\|118295_118754_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

123561 : 211826

Escherichia_phage(25.0%)

transposase,plate,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209474.1\|123561_124665_-\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_002228170.1\|125144_127022_+	TonB-dependent vitamin B12 receptor BtuB	A0A0P0I887	Acinetobacter_phage	1.3e-11	24.8
WP_002228171.1\|126966_127830_+	glutamate racemase	NA	NA	NA	NA
WP_086016626.1\|133819_134918_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	2.2e-46	39.2
WP_001297096.1\|135583_136363_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|136362_137385_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002215609.1\|138047_138746_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_002209983.1\|138878_139700_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_002209984.1\|139987_140542_+	YggT family protein	NA	NA	NA	NA
WP_002215612.1\|140538_140829_+	YggU family protein	NA	NA	NA	NA
WP_002215614.1\|140928_141522_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_002209987.1\|141514_142645_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_002209743.1\|142813_144022_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_041854754.1\|144157_153490_-	pore forming RTX toxin family protein	NA	NA	NA	NA
WP_011566213.1\|153985_154231_-	DUF2884 family protein	NA	NA	NA	NA
WP_002228656.1\|154188_154719_-	DUF2884 family protein	NA	NA	NA	NA
WP_002209989.1\|154830_155757_-	glutaminase B	NA	NA	NA	NA
WP_002209990.1\|155867_156194_-	YggL family protein	NA	NA	NA	NA
WP_002209991.1\|156193_156913_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_041854841.1\|157250_158366_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_002230648.1\|158543_158816_+	oxidative damage protection protein	NA	NA	NA	NA
WP_002209995.1\|158998_160075_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_002209997.1\|160356_161457_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002209998.1\|161545_163579_+	TonB-dependent siderophore receptor	A0A0P0I887	Acinetobacter_phage	4.5e-05	26.1
WP_012228890.1\|163661_164642_-	ABC transporter permease	NA	NA	NA	NA
WP_002210000.1\|164674_166174_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.2e-19	31.7
WP_002210001.1\|166219_167179_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_002210002.1\|167734_169897_-	ornithine decarboxylase SpeF	NA	NA	NA	NA
WP_002210005.1\|171225_171861_-	DUF2345 domain-containing protein	NA	NA	NA	NA
WP_086016632.1\|172468_173166_-\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	1.3e-60	48.5
WP_002210008.1\|173261_174029_-	hypothetical protein	NA	NA	NA	NA
WP_002210009.1\|174015_176313_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_012228901.1\|176328_178677_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.1e-18	33.3
WP_012228902.1\|178673_181322_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	4.8e-92	29.5
WP_012228903.1\|181739_182231_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_041854755.1\|182234_183971_-	OmpA family protein	NA	NA	NA	NA
WP_002210015.1\|183970_184657_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002213011.1\|184653_186006_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_041854756.1\|186017_187562_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_012228906.1\|187604_188105_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002215900.1\|190379_190775_-	lipoprotein	NA	NA	NA	NA
WP_002215902.1\|191225_191876_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002215903.1\|193050_193701_+	acyl-homoserine-lactone synthase	NA	NA	NA	NA
WP_002211655.1\|193681_194425_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_002209743.1\|194704_195913_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_012228910.1\|196309_197650_+	peptidase	NA	NA	NA	NA
WP_002211652.1\|198026_198860_+	intradiol ring-cleavage dioxygenase	NA	NA	NA	NA
WP_002228661.1\|199007_199202_-	hypothetical protein	NA	NA	NA	NA
WP_002211651.1\|199149_200373_-	MFS transporter	NA	NA	NA	NA
WP_002211649.1\|202267_203218_+	acetyltransferase	NA	NA	NA	NA
WP_002211648.1\|203214_204963_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_012228914.1\|206360_208541_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_002211645.1\|208799_210224_-	MFS transporter	NA	NA	NA	NA
WP_100067904.1\|210471_211826_-\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7

DBSCAN-SWA_3

619793 : 689269

Escherichia_phage(25.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209743.1\|619793_621002_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002209017.1\|621095_621509_-	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_002209018.1\|621647_623024_-	Trk system potassium transporter TrkA	NA	NA	NA	NA
WP_041854762.1\|623079_624369_-	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_002209020.1\|624462_625410_-\|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	1.2e-05	29.8
WP_002209021.1\|625434_625947_-	peptide deformylase	NA	NA	NA	NA
WP_002213759.1\|626929_627388_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209023.1\|627885_628359_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_002228134.1\|628399_628939_+	DNA-binding protein	NA	NA	NA	NA
WP_002209025.1\|628940_629513_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	A0A291ATS8	Pandoravirus	4.9e-10	30.2
WP_002209026.1\|629521_630343_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002230372.1\|630397_630940_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_000255944.1\|637320_638343_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|638342_639122_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002212076.1\|639635_640565_+	homoserine O-succinyltransferase	NA	NA	NA	NA
WP_002212077.1\|640985_642584_+	malate synthase A	NA	NA	NA	NA
WP_002212078.1\|642630_643938_+	isocitrate lyase	NA	NA	NA	NA
WP_002209054.1\|644246_645461_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
WP_002209055.1\|645457_645727_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_002209056.1\|645804_646788_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002209057.1\|646957_648244_+	transporter	NA	NA	NA	NA
WP_002215044.1\|648289_649471_+	cystathionine beta-lyase	NA	NA	NA	NA
WP_002209058.1\|649611_650412_-	heme ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.9e-15	27.5
WP_002209059.1\|650404_651409_-	iron ABC transporter permease	NA	NA	NA	NA
WP_002209060.1\|651405_652245_-	hemin ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002209061.1\|652241_653279_-	hemin-degrading factor	NA	NA	NA	NA
WP_002209062.1\|653397_655428_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_002230445.1\|655557_655749_-	hemin uptake protein HemP	NA	NA	NA	NA
WP_002209064.1\|655834_656485_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_002209065.1\|656518_657028_-	heme utilization cystosolic carrier protein HutX	NA	NA	NA	NA
WP_041854763.1\|657060_658359_-	heme anaerobic degradation radical SAM methyltransferase ChuW/HutW	NA	NA	NA	NA
WP_002209067.1\|658709_659510_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_002209068.1\|659824_660313_-	tellurium resistance protein TerW	NA	NA	NA	NA
WP_002209069.1\|660710_661670_-	citrate lyase subunit beta	NA	NA	NA	NA
WP_002209070.1\|661669_662749_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	3.7e-43	36.1
WP_002209071.1\|662741_663554_-	hypothetical protein	NA	NA	NA	NA
WP_002209072.1\|663546_664683_-	phosphoribosyltransferase domain-containing protein	A0A172Q0Y1	Acinetobacter_phage	4.8e-33	28.3
WP_012229088.1\|664694_665753_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_002228131.1\|666028_666622_+	TerD family protein	A0A2L1IWC0	Streptomyces_phage	1.2e-11	34.5
WP_002209075.1\|666621_667806_+	tellurite resistance protein	NA	NA	NA	NA
WP_002209076.1\|667838_668294_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_002209077.1\|668315_669353_+	TerC/Alx family metal homeostasis membrane protein	K7QKE8	Escherichia_phage	2.9e-77	48.8
WP_002209078.1\|669416_669995_+	TerD family protein	K4JRX3	Caulobacter_phage	4.9e-34	40.5
WP_002209079.1\|670178_670754_+	TerD family protein	K4JRX3	Caulobacter_phage	1.6e-29	40.0
WP_002213759.1\|670945_671404_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209080.1\|672176_672815_+	DUF1120 domain-containing protein	NA	NA	NA	NA
WP_012229089.1\|673065_675444_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002209082.1\|675515_676259_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_002214631.1\|676269_676524_+	hypothetical protein	NA	NA	NA	NA
WP_041854764.1\|677714_679034_+	hypothetical protein	NA	NA	NA	NA
WP_002209085.1\|680042_682100_+	FAD-binding protein	NA	NA	NA	NA
WP_002209087.1\|687060_687585_+	chorismate lyase	NA	NA	NA	NA
WP_002209088.1\|687750_688617_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_002213775.1\|688810_689269_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

870936 : 931145

uncultured_virus(16.67%)

transposase,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213759.1\|870936_871395_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209200.1\|871608_874695_-	efflux RND transporter permease subunit	S5VL66	Leptospira_phage	3.5e-17	18.9
WP_002209199.1\|874694_875777_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_002209198.1\|875828_876062_-	LapA family protein	NA	NA	NA	NA
WP_002209197.1\|876871_878104_-	O-antigen ligase family protein	NA	NA	NA	NA
WP_002209196.1\|878151_879315_-	putative lipopolysaccharide heptosyltransferase III	NA	NA	NA	NA
WP_012229133.1\|879660_881253_-	autoinducer-2 kinase	NA	NA	NA	NA
WP_002221620.1\|882448_882655_+	hypothetical protein	NA	NA	NA	NA
WP_002209192.1\|882764_884348_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	2.3e-25	33.7
WP_002209191.1\|884341_885397_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_002209190.1\|885393_886395_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_002209189.1\|886453_887473_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_002209188.1\|887528_888404_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_002209186.1\|888467_888758_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_002209184.1\|889080_889572_+	DUF2501 domain-containing protein	NA	NA	NA	NA
WP_002228120.1\|889633_892192_-	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	5.2e-11	26.3
WP_012229134.1\|892556_893651_+	PTS fructose transporter subunit EIIC	NA	NA	NA	NA
WP_002209181.1\|893789_894110_+	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA
WP_002209180.1\|894202_894547_+	PTS fructose-like transporter subunit IIB	NA	NA	NA	NA
WP_002209179.1\|894539_895415_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002209178.1\|895416_895953_-	hypothetical protein	NA	NA	NA	NA
WP_002209177.1\|896658_897855_+	DUF898 domain-containing protein	NA	NA	NA	NA
WP_002209176.1\|897865_898912_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_002209174.1\|899057_900212_-	hypothetical protein	NA	NA	NA	NA
WP_002209173.1\|900208_901597_-	ATPase involved in DNA repair	NA	NA	NA	NA
WP_002209172.1\|901661_901859_+	hypothetical protein	NA	NA	NA	NA
WP_071525507.1\|902009_902348_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002209743.1\|902780_903989_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002209461.1\|904395_904743_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_002222284.1\|904823_905564_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_002209459.1\|905602_906151_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002209458.1\|906172_906421_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_002209456.1\|906648_908010_-	signal recognition particle protein	NA	NA	NA	NA
WP_002209455.1\|908175_908967_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_001297096.1\|909810_910590_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|910589_911612_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002209453.1\|912366_912882_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_002209452.1\|913049_914648_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_002209451.1\|914691_915120_-	DedA family protein	NA	NA	NA	NA
WP_002209450.1\|915116_915683_-	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_002209449.1\|916935_917121_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	3.8e-12	66.7
WP_002209448.1\|917370_919998_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.8e-78	36.3
WP_002209743.1\|920328_921537_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002209446.1\|922154_923225_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	4.1e-111	61.3
WP_002209445.1\|923339_923828_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.6e-28	48.0
WP_002209444.1\|924143_925484_+	MFS transporter	NA	NA	NA	NA
WP_002209443.1\|925731_926676_+	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_002209441.1\|926897_928322_-	L-fucose/L-arabinose isomerase family protein	NA	NA	NA	NA
WP_100067904.1\|929790_931145_-\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7

DBSCAN-SWA_5

1173134 : 1228611

uncultured_Mediterranean_phage(18.18%)

transposase,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002216203.1\|1173134_1173650_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	3.6e-28	55.6
WP_012229216.1\|1173655_1174297_-	stringent starvation protein A	NA	NA	NA	NA
WP_002230558.1\|1174476_1174674_+	hypothetical protein	NA	NA	NA	NA
WP_002210133.1\|1174670_1175063_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_002210132.1\|1175077_1175506_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_002210131.1\|1175819_1176947_-	cell division protein ZapE	NA	NA	NA	NA
WP_002210130.1\|1177170_1177575_+	DUF1043 family protein	NA	NA	NA	NA
WP_002218066.1\|1177845_1179219_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	7.4e-20	28.2
WP_002213775.1\|1179335_1179794_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210128.1\|1180019_1181108_+	outer membrane-stress sensor serine endopeptidase DegS	A0A1B1IRD3	uncultured_Mediterranean_phage	2.1e-09	31.8
WP_002210127.1\|1181288_1182551_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002210126.1\|1182691_1182946_-	BolA family iron metabolism protein IbaG	NA	NA	NA	NA
WP_002210125.1\|1183092_1183395_-	lipid asymmetry maintenance protein MlaB	NA	NA	NA	NA
WP_002210124.1\|1183430_1184054_-	phospholipid-binding protein MlaC	NA	NA	NA	NA
WP_002210123.1\|1184066_1184624_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_002210122.1\|1184628_1185411_-	lipid asymmetry maintenance ABC transporter permease subunit MlaE	NA	NA	NA	NA
WP_002210121.1\|1185628_1186447_-	phospholipid ABC transporter ATP-binding protein MlaF	G3M9Y6	Bacillus_virus	2.2e-19	31.7
WP_002210120.1\|1186711_1187686_+	calcium/sodium antiporter	NA	NA	NA	NA
WP_002210119.1\|1187796_1188783_+	arabinose-5-phosphate isomerase KdsD	A0A2P0VNK5	Tetraselmis_virus	6.0e-40	30.8
WP_002228203.1\|1189031_1189595_+	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	9.6e-59	83.0
WP_002218352.1\|1189591_1190155_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_002210117.1\|1190138_1190684_+	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA
WP_002210116.1\|1190690_1191416_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-22	28.4
WP_012229232.1\|1191477_1192911_+	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_002213952.1\|1193339_1193822_+	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_002210113.1\|1194127_1194982_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-05	30.0
WP_002210112.1\|1194978_1195251_+	PTS phosphocarrier protein NPr	NA	NA	NA	NA
WP_002210111.1\|1195588_1196524_+	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	1.5e-48	38.5
WP_002210110.1\|1196535_1197000_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_002210109.1\|1197137_1197524_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_002210107.1\|1197822_1198299_+	PliI family lysozyme inhibitor of I-type lysozyme	NA	NA	NA	NA
WP_002210106.1\|1198532_1199486_+	HTH-type transcriptional regulator TreR	NA	NA	NA	NA
WP_002215779.1\|1199896_1201312_+	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_002210104.1\|1201406_1203074_+	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_002210103.1\|1203426_1203837_+	nucleoside diphosphate kinase regulator	NA	NA	NA	NA
WP_002210102.1\|1204076_1204463_-	cytochrome b562	NA	NA	NA	NA
WP_011055205.1\|1204670_1205315_-	hypothetical protein	A0A1B0VBK8	Salmonella_phage	3.4e-52	49.0
WP_012229239.1\|1205563_1206904_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_002210099.1\|1207084_1207633_+	ribosome-associated protein	NA	NA	NA	NA
WP_002210098.1\|1207744_1208026_-	ribonuclease inhibitor	NA	NA	NA	NA
WP_002214288.1\|1208030_1208504_-	ribonuclease Ba	NA	NA	NA	NA
WP_002210095.1\|1210439_1212395_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_002210094.1\|1212396_1213332_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_002210093.1\|1213339_1213543_-	AaeX family protein	NA	NA	NA	NA
WP_002210092.1\|1213845_1214757_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_002214297.1\|1215017_1215884_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002210090.1\|1216119_1218621_+	toxin	NA	NA	NA	NA
WP_012229241.1\|1218661_1222255_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_002210089.1\|1222311_1226802_+	toxin	NA	NA	NA	NA
WP_012229243.1\|1227141_1228611_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	3.7e-179	99.4

DBSCAN-SWA_6

1269002 : 1342913

Bacillus_virus(12.5%)

transposase,tRNA,integrase,protease

attL 1275438:1275454|attR 1346774:1346790

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042666681.1\|1269002_1269461_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210051.1\|1269865_1271041_+	DNA repair ATPase	NA	NA	NA	NA
WP_002210050.1\|1271147_1272494_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_002228699.1\|1272747_1273599_+	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
WP_012229272.1\|1273788_1274394_-	SIS domain-containing protein	NA	NA	NA	NA
WP_012229273.1\|1274390_1276028_-	FGGY-family carbohydrate kinase	NA	NA	NA	NA
1275438:1275454	attL	NA	NA	NA	NA
WP_002210046.1\|1276046_1277000_-	ABC transporter permease	NA	NA	NA	NA
WP_012229276.1\|1277001_1277946_-	ABC transporter permease	NA	NA	NA	NA
WP_002210044.1\|1277938_1279435_-	sugar ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.1e-13	26.7
WP_012229279.1\|1279638_1280628_-	autoinducer 2 ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210042.1\|1281421_1282342_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	6.8e-78	53.5
WP_002210041.1\|1282493_1283681_+	hypothetical protein	NA	NA	NA	NA
WP_002215816.1\|1283898_1285548_-	Na+/H+ antiporter	NA	NA	NA	NA
WP_002210039.1\|1285896_1287252_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	4.1e-164	74.0
WP_002210038.1\|1287705_1287909_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_012229280.1\|1288516_1289332_-	aliphatic sulfonates ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.6e-28	34.2
WP_012229282.1\|1289471_1290947_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-181	100.0
WP_002209166.1\|1291080_1293144_+	McrB family protein	K4I1H4	Acidithiobacillus_phage	5.3e-30	33.2
WP_002209167.1\|1293140_1294457_+	McrC family protein	NA	NA	NA	NA
WP_002209169.1\|1295480_1296806_+	site-specific DNA-methyltransferase	NA	NA	NA	NA
WP_002230553.1\|1296855_1297578_+	ATP-binding protein	NA	NA	NA	NA
WP_002209743.1\|1298948_1300157_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002215988.1\|1301580_1302294_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002208592.1\|1302673_1303816_+	glycosyltransferase	NA	NA	NA	NA
WP_002208591.1\|1305282_1306296_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_012229288.1\|1307439_1308405_+	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	4.8e-82	47.6
WP_002208590.1\|1308584_1309991_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.4e-50	30.3
WP_002208589.1\|1309993_1310737_+	glycosyltransferase	A0A1V0SAH6	Catovirus	8.6e-07	34.8
WP_002208588.1\|1310741_1312115_+	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	8.1e-35	29.1
WP_002208587.1\|1312162_1313314_+	LPS O-antigen length regulator	NA	NA	NA	NA
WP_002208586.1\|1313517_1314822_+	inosine/guanosine kinase	NA	NA	NA	NA
WP_012229292.1\|1314918_1316607_-	Kef family K(+) transporter	NA	NA	NA	NA
WP_002208584.1\|1316841_1318056_-	MFS transporter	NA	NA	NA	NA
WP_002208583.1\|1320077_1320317_-	hypothetical protein	NA	NA	NA	NA
WP_002208581.1\|1320653_1321133_-\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA	NA	NA	NA
WP_002208580.1\|1321397_1322207_-	TraB/GumN family protein	NA	NA	NA	NA
WP_012229295.1\|1322727_1325595_-	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	8.5e-111	36.7
WP_002208578.1\|1325801_1326221_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_002208577.1\|1326329_1326779_-	NfeD family protein	NA	NA	NA	NA
WP_002208576.1\|1326781_1327696_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_002208575.1\|1327890_1328760_-	co-chaperone YbbN	NA	NA	NA	NA
WP_002208574.1\|1328836_1329613_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_041854772.1\|1329999_1330635_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_012229298.1\|1330605_1331292_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-30	33.8
WP_002208571.1\|1331288_1333718_+	ABC transporter permease	NA	NA	NA	NA
WP_002208570.1\|1333761_1334826_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002208569.1\|1334822_1335347_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_002208568.1\|1335622_1336345_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_002208567.1\|1336355_1336850_-	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_002222677.1\|1337060_1338446_+\|tRNA	cysteine--tRNA ligase	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	2.2e-40	28.5
WP_002213759.1\|1338772_1339231_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209775.1\|1339377_1339590_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_002209774.1\|1339604_1340471_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.2e-30	34.1
WP_041854773.1\|1340826_1341009_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_002215268.1\|1341267_1341468_-	hypothetical protein	NA	NA	NA	NA
WP_012229308.1\|1341581_1342229_-	hypothetical protein	NA	NA	NA	NA
WP_002215266.1\|1342213_1342552_-	hypothetical protein	NA	NA	NA	NA
WP_079866998.1\|1342634_1342913_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y6Q1	Salmonella_phage	4.2e-31	73.5
1346774:1346790	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1358126 : 1429472

Escherichia_phage(10.53%)

transposase,tRNA,integrase,protease

attL 1364758:1364772|attR 1434732:1434746

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209092.1\|1358126_1359164_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_002209093.1\|1359679_1359898_+	envelope stress response protein PspG	NA	NA	NA	NA
WP_012228761.1\|1360551_1362027_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-181	100.0
WP_071588557.1\|1362120_1362729_+	Hpt domain-containing protein	NA	NA	NA	NA
WP_002210824.1\|1362731_1363385_+	transcriptional regulator RcsB	NA	NA	NA	NA
WP_011171779.1\|1363452_1366326_-	two-component system sensor histidine kinase RcsC	A0A1V0SGX0	Hokovirus	3.8e-42	28.3
1364758:1364772	attL	NA	NA	NA	NA
WP_012229320.1\|1366513_1369171_-	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	3.9e-102	34.4
WP_002210820.1\|1369432_1370161_+	bifunctional 3-demethylubiquinone 3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol methylase	NA	NA	NA	NA
WP_002210818.1\|1370654_1372943_+	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.1e-286	64.9
WP_002210817.1\|1373105_1374236_+	ribonucleotide-diphosphate reductase subunit beta	G9IAA3	Pseudomonas_phage	7.6e-172	78.6
WP_002210816.1\|1374239_1374497_+	2Fe-2S ferredoxin-like protein	G9IAA2	Pseudomonas_phage	4.0e-20	54.9
WP_002210815.1\|1374531_1375041_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_002210814.1\|1375098_1376292_-	nicotinamide mononucleotide deamidase-related protein YfaY	NA	NA	NA	NA
WP_002221775.1\|1376906_1378115_+	tyrosine transporter TyrP	NA	NA	NA	NA
WP_002210812.1\|1378371_1378914_-	YfaZ family protein	NA	NA	NA	NA
WP_012229321.1\|1379274_1380714_+	catalase	A0A2K9L0T1	Tupanvirus	8.4e-99	38.8
WP_002210810.1\|1380781_1382962_-	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	1.1e-44	26.3
WP_002210809.1\|1383231_1384347_+	porin OmpF2	Q1MVN1	Enterobacteria_phage	2.1e-110	54.5
WP_002210807.1\|1384758_1385649_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_002210806.1\|1385773_1385977_+	hypothetical protein	NA	NA	NA	NA
WP_002210805.1\|1386077_1388384_-	arginine decarboxylase	NA	NA	NA	NA
WP_002210804.1\|1388453_1389788_-	arginine/agmatine antiporter	NA	NA	NA	NA
WP_002210802.1\|1391074_1392013_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.4e-23	33.5
WP_002210801.1\|1392009_1393164_-	ABC transporter permease	NA	NA	NA	NA
WP_002210799.1\|1395092_1395947_+	3-mercaptopyruvate sulfurtransferase	NA	NA	NA	NA
WP_002210798.1\|1396073_1397489_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_002210797.1\|1397512_1398370_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_016604820.1\|1398484_1399180_-	urea ABC transporter ATP-binding subunit UrtE	A0A2H4PQG7	Staphylococcus_phage	4.1e-11	24.3
WP_002210795.1\|1399273_1400110_-	urea ABC transporter ATP-binding protein UrtD	A0A285PWH2	Cedratvirus	4.2e-10	28.2
WP_002210794.1\|1400106_1401183_-	urea ABC transporter permease subunit UrtC	NA	NA	NA	NA
WP_012229331.1\|1401182_1402784_-	urea ABC transporter permease subunit UrtB	NA	NA	NA	NA
WP_002210792.1\|1402907_1404176_-	urea ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210791.1\|1404617_1405091_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.7e-37	50.7
WP_002210790.1\|1405336_1406218_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_002210789.1\|1406220_1407081_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_002210788.1\|1407183_1408113_-	phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210787.1\|1408149_1408986_-	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.1e-17	30.1
WP_002210786.1\|1409193_1409442_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_002210785.1\|1409626_1410730_-	suppressor of fused domain protein	NA	NA	NA	NA
WP_002214185.1\|1411042_1411384_+	HNH nuclease family protein	NA	NA	NA	NA
WP_002210782.1\|1411409_1411949_-	class IV adenylate cyclase	NA	NA	NA	NA
WP_012229332.1\|1412158_1413871_+	D-lactate dehydrogenase	NA	NA	NA	NA
WP_002210780.1\|1413991_1414927_-	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_002210778.1\|1415265_1415445_+	hypothetical protein	NA	NA	NA	NA
WP_002228612.1\|1415518_1416457_-\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_002210776.1\|1416648_1417578_-	DUF4097 domain-containing protein	NA	NA	NA	NA
WP_002213759.1\|1417992_1418451_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002215951.1\|1418905_1419223_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	2.0e-13	48.1
WP_002210705.1\|1419228_1419543_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_002210707.1\|1419891_1420980_-	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.4e-114	60.4
WP_002215950.1\|1420976_1421936_-	toprim domain-containing protein	A0A1W6JPG0	Morganella_phage	1.6e-50	41.0
WP_002215949.1\|1421928_1422471_-	ash family protein	NA	NA	NA	NA
WP_002210709.1\|1422470_1422671_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	1.6e-08	51.7
WP_002210710.1\|1422663_1423551_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_041854778.1\|1423572_1423896_-	hypothetical protein	NA	NA	NA	NA
WP_002215946.1\|1424358_1424586_+	hypothetical protein	NA	NA	NA	NA
WP_041854779.1\|1424747_1426418_-	hypothetical protein	NA	NA	NA	NA
WP_002210712.1\|1426468_1427557_-	DUF4297 domain-containing protein	NA	NA	NA	NA
WP_002210713.1\|1427635_1428835_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.2e-108	50.2
WP_041854780.1\|1429058_1429472_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
1434732:1434746	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1469654 : 1537671

Escherichia_phage(13.04%)

coat,plate,tail,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210751.1\|1469654_1470473_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002210753.1\|1470689_1472180_-	molybdate ABC transporter ATP-binding protein ModF	A0A1M7XV31	Cedratvirus	2.8e-12	26.8
WP_002210754.1\|1472289_1473081_-	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA
WP_002217291.1\|1473329_1473482_+	multidrug efflux pump-associated protein, AcrZ family	NA	NA	NA	NA
WP_002210756.1\|1473716_1474496_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012229365.1\|1474495_1475191_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA
WP_002210758.1\|1475184_1476264_+	molybdenum ABC transporter ATP-binding protein ModC	G9BWD6	Planktothrix_phage	1.4e-21	35.1
WP_002210759.1\|1476319_1477141_-	pyridoxal phosphatase	NA	NA	NA	NA
WP_002220188.1\|1478616_1479897_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	2.4e-17	32.1
WP_002210762.1\|1479995_1481033_+	biotin synthase BioB	NA	NA	NA	NA
WP_002210763.1\|1481032_1482184_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_002210764.1\|1482167_1482971_+	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_002216554.1\|1482963_1483686_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_002210766.1\|1483818_1484529_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-13	25.3
WP_002210767.1\|1485623_1487639_+	excinuclease ABC subunit B	NA	NA	NA	NA
WP_002210768.1\|1487930_1488176_+	VF530 family DNA-binding protein	NA	NA	NA	NA
WP_002210769.1\|1488306_1489230_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	3.7e-23	27.8
WP_002210771.1\|1489761_1490742_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_002210772.1\|1490842_1491322_+	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_002210773.1\|1491318_1491564_+	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_002210774.1\|1491566_1492019_+	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_002210775.1\|1492161_1492872_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_002213759.1\|1493106_1493565_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_012229373.1\|1493966_1495442_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	4.0e-181	99.7
WP_002210825.1\|1497613_1498768_-	MFS transporter	NA	NA	NA	NA
WP_002210826.1\|1499878_1500994_+	porin OmpC	Q1MVN1	Enterobacteria_phage	9.6e-111	57.6
WP_002228026.1\|1501733_1502900_-	D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH	NA	NA	NA	NA
WP_002208870.1\|1503174_1504701_-	MFS transporter	NA	NA	NA	NA
WP_002230695.1\|1505077_1506106_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_002208868.1\|1506179_1507967_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.0e-10	63.5
WP_002208867.1\|1508403_1509339_-	omptin family outer membrane beta-barrel protein YcoA	NA	NA	NA	NA
WP_002208866.1\|1509510_1509753_-	DinI family protein	K7PKR6	Enterobacteria_phage	6.9e-22	65.0
WP_002208864.1\|1509958_1510681_-	LexA family transcriptional regulator	F1C599	Cronobacter_phage	2.2e-63	51.9
WP_002215470.1\|1510954_1511434_+	antitermination protein Q	S5M7R9	Escherichia_phage	2.3e-37	61.0
WP_002208862.1\|1511644_1512949_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-90	46.0
WP_002208861.1\|1513657_1514470_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002208860.1\|1514445_1515240_+	hydroxypyruvate isomerase family protein	NA	NA	NA	NA
WP_002208859.1\|1515871_1516162_+	hypothetical protein	H6WRZ3	Salmonella_phage	7.7e-12	46.3
WP_002208858.1\|1516207_1516825_+	ATP-binding protein	NA	NA	NA	NA
WP_002208857.1\|1516829_1517024_+	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	3.5e-08	60.4
WP_002208856.1\|1517020_1518529_+\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	2.4e-104	44.2
WP_002208855.1\|1518550_1518919_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_002208854.1\|1518920_1519220_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002208853.1\|1519340_1520834_+\|coat	coat protein	NA	NA	NA	NA
WP_012229392.1\|1521100_1522507_+	DNA circularization protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
WP_002208850.1\|1522503_1523559_+\|tail	tail protein	M1PVV2	Vibrio_phage	1.3e-37	27.2
WP_012229395.1\|1523574_1524171_+\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_002208848.1\|1524167_1524623_+	phage GP46 family protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_002208847.1\|1524626_1525763_+\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	4.5e-31	30.5
WP_002215458.1\|1525759_1526020_+	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_002208846.1\|1526016_1526364_+	DUF2313 domain-containing protein	A0A2P9JZK7	Alteromonadaceae_phage	6.4e-21	41.3
WP_012229397.1\|1526460_1527240_+\|tail	tail fiber protein	Q9MCR6	Enterobacteria_phage	1.0e-50	51.9
WP_002208843.1\|1527537_1528278_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_012229399.1\|1528568_1530005_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002208841.1\|1530130_1530493_-	hypothetical protein	NA	NA	NA	NA
WP_002208840.1\|1531192_1531681_-	hypothetical protein	NA	NA	NA	NA
WP_002208839.1\|1531693_1532842_-	HNH endonuclease	NA	NA	NA	NA
WP_002230704.1\|1533198_1533582_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	7.8e-36	66.7
WP_002208837.1\|1533812_1535609_-	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_002208836.1\|1535636_1535864_-	YejL family protein	NA	NA	NA	NA
WP_002208835.1\|1536041_1537046_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	3.1e-84	47.7
WP_002213759.1\|1537212_1537671_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1649736 : 1681376

uncultured_Mediterranean_phage(18.18%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002211349.1\|1649736_1650057_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	8.2e-15	42.7
WP_002213759.1\|1652635_1653094_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211347.1\|1653465_1653684_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_002211346.1\|1653849_1654560_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_002211344.1\|1654778_1656503_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	3.3e-17	31.8
WP_041854782.1\|1656505_1658272_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	6.8e-26	24.9
WP_002213759.1\|1658752_1659211_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002213759.1\|1659463_1659922_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211341.1\|1660152_1661115_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	4.9e-63	45.7
WP_002211340.1\|1661881_1662376_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_012229446.1\|1662498_1666398_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.5e-89	48.8
WP_002211338.1\|1666590_1667199_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_002228009.1\|1667209_1668553_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	5.4e-76	39.4
WP_002211336.1\|1668794_1670087_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.0e-92	43.5
WP_002211334.1\|1671642_1672377_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	3.6e-21	27.4
WP_002211333.1\|1673363_1674038_+	glycosyltransferase family 25 protein	A0A2H4UUT1	Bodo_saltans_virus	7.8e-31	40.5
WP_002213759.1\|1674204_1674663_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211095.1\|1675067_1675409_-	YebY family protein	NA	NA	NA	NA
WP_002211094.1\|1675505_1676390_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_002211093.1\|1676392_1676779_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_042666694.1\|1676992_1677223_+	hypothetical protein	NA	NA	NA	NA
WP_002211092.1\|1677255_1677765_-	non-heme ferritin	NA	NA	NA	NA
WP_002211091.1\|1678165_1678396_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.0e-14	61.8
WP_002211090.1\|1678455_1679406_-	prolyl aminopeptidase	NA	NA	NA	NA
WP_012229373.1\|1679900_1681376_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	4.0e-181	99.7

DBSCAN-SWA_10

1965413 : 2081782

Escherichia_phage(20.0%)

transposase,plate,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209743.1\|1965413_1966622_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002209757.1\|1969272_1969803_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA
WP_002209759.1\|1972423_1974052_-	hypothetical protein	NA	NA	NA	NA
WP_012229524.1\|1974524_1975394_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.3e-49	41.1
WP_002209763.1\|1975409_1976399_+	aldo/keto reductase	NA	NA	NA	NA
WP_002209764.1\|1976453_1977347_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000255944.1\|1977440_1978463_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|1978462_1979242_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002211540.1\|1979280_1979616_+	TatD family hydrolase	NA	NA	NA	NA
WP_002211541.1\|1979630_1980653_+	porphobilinogen synthase	NA	NA	NA	NA
WP_002211542.1\|1980762_1981251_-	transcription/translation regulatory transformer protein RfaH	NA	NA	NA	NA
WP_002215917.1\|1981498_1982995_+	4-hydroxy-3-polyprenylbenzoate decarboxylase	NA	NA	NA	NA
WP_002215918.1\|1983049_1983751_+	NAD(P)H-flavin reductase	NA	NA	NA	NA
WP_002211545.1\|1983910_1985074_-	acetyl-CoA C-acyltransferase FadA	NA	NA	NA	NA
WP_002211546.1\|1985085_1987275_-	fatty acid oxidation complex subunit alpha FadB	NA	NA	NA	NA
WP_002211547.1\|1987601_1988933_+	Xaa-Pro dipeptidase	NA	NA	NA	NA
WP_002231137.1\|1988932_1989544_+	IMPACT family protein	A0A1X9I5T8	Streptococcus_phage	1.7e-24	44.4
WP_002211550.1\|1989583_1991035_+	Trk system potassium transporter TrkH	NA	NA	NA	NA
WP_002215920.1\|1991056_1991590_+	menaquinone-dependent protoporphyrinogen IX dehydrogenase	NA	NA	NA	NA
WP_002209743.1\|1997515_1998724_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002209688.1\|1999903_2000245_+	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_002209687.1\|2000319_2000667_-	hypothetical protein	NA	NA	NA	NA
WP_002209686.1\|2000691_2001171_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012104872.1\|2001235_2002042_-	ImpE family protein	NA	NA	NA	NA
WP_002354537.1\|2002061_2002904_-	TagK domain-containing protein	NA	NA	NA	NA
WP_002209684.1\|2002909_2003170_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_012229527.1\|2003268_2005893_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	3.4e-29	23.1
WP_002209743.1\|2006697_2007906_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_012228761.1\|2012230_2013706_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-181	100.0
WP_002211286.1\|2014339_2014528_+	hypothetical protein	NA	NA	NA	NA
WP_002220006.1\|2014793_2015312_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_002224683.1\|2015380_2017132_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_002226586.1\|2017342_2017798_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_042666681.1\|2017966_2018425_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211332.1\|2018628_2020911_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.6e-157	41.2
WP_002211331.1\|2020966_2021824_-	formate transporter FocA	NA	NA	NA	NA
WP_002211330.1\|2022519_2024286_-	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_002211329.1\|2024434_2025472_+	L-asparaginase 2	NA	NA	NA	NA
WP_002211328.1\|2025740_2026835_+	YadA-like family protein	B0FIT1	Escherichia_phage	3.7e-06	32.7
WP_012229530.1\|2026855_2028703_+	YadA-like family protein	NA	NA	NA	NA
WP_002211326.1\|2029069_2030155_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	4.4e-84	46.1
WP_002211325.1\|2030317_2031604_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_002211324.1\|2031916_2032609_+	(d)CMP kinase	NA	NA	NA	NA
WP_012229531.1\|2032782_2034456_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_002211322.1\|2034516_2034801_+	integration host factor subunit beta	A7KV42	Bacillus_phage	2.4e-10	40.2
WP_012229532.1\|2036044_2038336_+	ComEC family protein	NA	NA	NA	NA
WP_002211320.1\|2038371_2040120_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	8.7e-66	31.5
WP_002211319.1\|2040116_2041103_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_002226050.1\|2041110_2042538_-	VOC family protein	NA	NA	NA	NA
WP_002211317.1\|2043256_2043466_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.0e-10	50.0
WP_002211315.1\|2044013_2044196_+	hypothetical protein	NA	NA	NA	NA
WP_002211314.1\|2044192_2044945_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_002211313.1\|2045307_2046201_+	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_012229535.1\|2046973_2047759_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_002211310.1\|2047755_2049078_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_002211309.1\|2049058_2049787_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_002211308.1\|2049783_2054241_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_002213759.1\|2054456_2054915_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002217987.1\|2055198_2057055_+	L,D-transpeptidase	NA	NA	NA	NA
WP_002211305.1\|2057278_2057827_+	YcbK family protein	A0A0K1LLY2	Rhodobacter_phage	7.8e-05	34.7
WP_002211304.1\|2057887_2058535_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	2.2e-22	32.3
WP_002211303.1\|2058769_2059960_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_002213759.1\|2060251_2060710_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_054104532.1\|2060927_2062007_-	porin OmpF	Q1MVN1	Enterobacteria_phage	1.1e-111	56.8
WP_002211301.1\|2062307_2063708_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	6.5e-80	35.2
WP_041854876.1\|2064182_2065388_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_002220013.1\|2066085_2068701_+	aminopeptidase N	NA	NA	NA	NA
WP_002211296.1\|2069327_2070338_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_002211295.1\|2070520_2071072_+	cell division protein ZapC	NA	NA	NA	NA
WP_002211294.1\|2071097_2072210_-	MOSC N-terminal beta barrel domain-containing protein	NA	NA	NA	NA
WP_002211293.1\|2072309_2074430_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_002211292.1\|2074435_2076349_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	1.5e-47	28.9
WP_002211291.1\|2076477_2077764_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_002211290.1\|2077750_2079403_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_002211289.1\|2079399_2079978_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_002228015.1\|2080247_2080415_+	ribosome modulation factor	NA	NA	NA	NA
WP_002213759.1\|2080612_2081071_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002213775.1\|2081323_2081782_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

2246703 : 2329326

Escherichia_phage(15.0%)

tail,holin,transposase,tRNA,lysis,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209743.1\|2246703_2247912_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210642.1\|2247947_2248706_-	TonB system transport protein TonB	NA	NA	NA	NA
WP_002210643.1\|2249006_2249303_+	YciI family protein	NA	NA	NA	NA
WP_002217646.1\|2249525_2249771_+	zf-TFIIB domain-containing protein	NA	NA	NA	NA
WP_002210644.1\|2249886_2250150_-	hypothetical protein	NA	NA	NA	NA
WP_012229564.1\|2250370_2250910_-	Ail/Lom family outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.3e-25	41.8
WP_002388651.1\|2251338_2251515_-	YciY family protein	NA	NA	NA	NA
WP_001297096.1\|2251600_2252380_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|2252379_2253402_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_190947803.1\|2253705_2253816_+	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002210648.1\|2253915_2255376_+	cardiolipin synthase	NA	NA	NA	NA
WP_002210649.1\|2255540_2255864_+	YciU family protein	NA	NA	NA	NA
WP_002210650.1\|2256162_2256378_-	hypothetical protein	NA	NA	NA	NA
WP_002210651.1\|2256938_2257940_-	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF	G9BWD6	Planktothrix_phage	4.7e-24	34.7
WP_002210652.1\|2257936_2258938_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-14	29.2
WP_025470761.1\|2258949_2259858_-	oligopeptide ABC transporter permease OppC	NA	NA	NA	NA
WP_002210654.1\|2259873_2260794_-	oligopeptide ABC transporter permease OppB	NA	NA	NA	NA
WP_002218177.1\|2260880_2262518_-	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA
WP_002210656.1\|2263317_2263962_-	YchE family NAAT transporter	NA	NA	NA	NA
WP_002210657.1\|2264788_2267464_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_002210659.1\|2268214_2268805_-	thymidine kinase	A0A1Z1LYD5	Serratia_phage	1.5e-54	55.8
WP_002223593.1\|2269554_2269962_+	DNA-binding transcriptional regulator H-NS	NA	NA	NA	NA
WP_002213759.1\|2270169_2270628_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002209743.1\|2270708_2271917_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_000255944.1\|2272206_2273229_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|2273228_2274008_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002215632.1\|2274175_2274436_-	excisionase family protein	Q859D3	Escherichia_coli_phage	1.7e-10	42.9
WP_002211736.1\|2275460_2275907_+	recombination protein NinB	A0A2H4J8D9	uncultured_Caudovirales_phage	3.9e-47	62.5
WP_002211735.1\|2275980_2276586_+	recombination protein NinG	A0A1P8DTE0	Proteus_phage	2.8e-56	56.9
WP_002215636.1\|2276586_2276976_+	antitermination protein	A0A1W6JNX1	Morganella_phage	1.4e-45	68.8
WP_041854794.1\|2276979_2277198_+	ash family protein	NA	NA	NA	NA
WP_002211732.1\|2277246_2277810_+	Bro-N domain-containing protein	B6SD63	Bacteriophage	9.4e-30	58.0
WP_002211731.1\|2278233_2278443_+	hypothetical protein	NA	NA	NA	NA
WP_002430108.1\|2278789_2278987_+\|holin	phage holin family protein	B6SD15	Bacteriophage	4.9e-18	64.4
WP_002211730.1\|2279017_2279530_+	lysozyme	I6PBN2	Cronobacter_phage	9.7e-50	61.6
WP_002211729.1\|2279514_2279973_+\|lysis	lysis protein	A0A2H4JHL8	uncultured_Caudovirales_phage	4.9e-21	45.3
WP_002211727.1\|2280518_2281232_+	phage antirepressor KilAC domain-containing protein	Q5MBW0	Stx1-converting_phage	7.6e-69	60.2
WP_002211724.1\|2282184_2282634_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.0e-47	72.9
WP_002211723.1\|2282637_2283222_+	hypothetical protein	A0A0R6PHH0	Moraxella_phage	4.8e-69	70.7
WP_002209743.1\|2283269_2284478_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211722.1\|2284482_2285457_+	hypothetical protein	A0A1W6JNY3	Morganella_phage	2.3e-153	81.1
WP_002228445.1\|2285456_2286185_+	hypothetical protein	A0A1B0VMH0	Pseudomonas_phage	4.6e-61	51.4
WP_002228446.1\|2286203_2286845_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	3.8e-59	54.1
WP_012229589.1\|2286845_2287958_+	hypothetical protein	I6PD76	Cronobacter_phage	3.9e-120	58.0
WP_002211720.1\|2288079_2288853_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.8e-69	62.3
WP_002211717.1\|2289727_2289982_+	hypothetical protein	J9Q7U0	Salmonella_phage	2.2e-18	53.1
WP_002211716.1\|2289983_2290334_+	hypothetical protein	I6PD77	Cronobacter_phage	6.9e-31	56.0
WP_002211715.1\|2290335_2290920_+	hypothetical protein	G8C7Q1	Escherichia_phage	3.6e-48	52.1
WP_002211714.1\|2290916_2291324_+	DUF4128 domain-containing protein	NA	NA	NA	NA
WP_002211713.1\|2291389_2292310_+	Ig-like domain-containing protein	I6PBN6	Cronobacter_phage	4.4e-61	49.1
WP_002211712.1\|2292322_2292634_+	hypothetical protein	I6PDG2	Cronobacter_phage	1.4e-30	58.3
WP_071525538.1\|2292681_2292942_+	DUF1799 domain-containing protein	A0A0S2SY90	Pseudomonas_phage	3.7e-13	50.0
WP_012229598.1\|2292942_2296446_+\|tail	phage tail tape measure protein	K7PMB9	Enterobacterial_phage	1.1e-117	33.2
WP_002211710.1\|2296448_2296790_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.7e-21	50.0
WP_002213759.1\|2297095_2297554_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210990.1\|2297809_2298649_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002222427.1\|2298960_2299929_-	alpha/beta hydrolase	A0A2P1EM31	Moumouvirus	7.3e-14	28.7
WP_002210992.1\|2300235_2301177_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.1e-130	88.3
WP_002210994.1\|2305463_2305796_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_002210995.1\|2305855_2306515_-	MgtC/SapB family protein	G3MA03	Bacillus_virus	6.0e-20	44.6
WP_079993208.1\|2306799_2307123_+	DUF333 domain-containing protein	NA	NA	NA	NA
WP_002214605.1\|2307180_2307633_-	heat shock protein HslJ	NA	NA	NA	NA
WP_002210998.1\|2307702_2308695_-	2-hydroxyacid dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	7.6e-67	44.2
WP_002210999.1\|2308960_2311657_+	YdbH family protein	NA	NA	NA	NA
WP_002211000.1\|2311653_2311848_+	YnbE family lipoprotein	NA	NA	NA	NA
WP_002211001.1\|2311857_2312229_+	YdbL family protein	NA	NA	NA	NA
WP_002211002.1\|2312428_2313820_-	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	2.7e-46	30.0
WP_002211003.1\|2314029_2314986_+	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_002211004.1\|2315106_2315712_-	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_002214609.1\|2320360_2320690_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_002211007.1\|2320686_2321010_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002224556.1\|2321065_2321902_-\|protease	serine protease	NA	NA	NA	NA
WP_002229907.1\|2322235_2322514_-	acid resistance repetitive basic protein Asr	NA	NA	NA	NA
WP_012229608.1\|2323113_2323668_+	cytochrome b	NA	NA	NA	NA
WP_002211011.1\|2323693_2324272_+	YceI family protein	NA	NA	NA	NA
WP_002214618.1\|2324652_2324811_+	invertase	NA	NA	NA	NA
WP_002213759.1\|2328867_2329326_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

DBSCAN-SWA_12

2391814 : 2511174

101

Escherichia_phage(13.33%)

transposase,protease,tail,integrase

attL 2487602:2487632|attR 2511200:2511230

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|2391814_2392273_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_012229644.1\|2392362_2394387_+	putative virulence factor	NA	NA	NA	NA
WP_012229646.1\|2394555_2395350_-	DUF1460 domain-containing protein	NA	NA	NA	NA
WP_002232808.1\|2395711_2395807_+	ilvB operon leader peptide IvbL	NA	NA	NA	NA
WP_041854760.1\|2396013_2396472_+\|transposase	IS200/IS605-like element IS1541A family transposase	A0A1S5REW8	Helicobacter_phage	1.7e-08	24.1
WP_002230908.1\|2398291_2398639_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_002211025.1\|2398705_2399380_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_002223598.1\|2399510_2401907_-	TerB N-terminal domain-containing protein	NA	NA	NA	NA
WP_002211024.1\|2402452_2403898_-	alkaline phosphatase	NA	NA	NA	NA
WP_002211023.1\|2404138_2404657_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.6e-23	50.5
WP_002211022.1\|2404729_2405482_+	FNR family transcription factor	NA	NA	NA	NA
WP_002211020.1\|2406846_2408241_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_002211019.1\|2408313_2409840_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_002211018.1\|2410369_2411323_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_002211017.1\|2411592_2412984_+	amino acid permease	NA	NA	NA	NA
WP_012229654.1\|2413007_2413424_-	hypothetical protein	NA	NA	NA	NA
WP_002211015.1\|2413720_2414467_+	two-component system response regulator RstA	NA	NA	NA	NA
WP_012229656.1\|2415871_2417371_+	carboxypeptidase M32	NA	NA	NA	NA
WP_002213759.1\|2417492_2417951_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210622.1\|2418180_2420796_-	type I DNA topoisomerase	A0A1V0SB35	Catovirus	1.4e-88	34.1
WP_002228458.1\|2420822_2421122_-	hypothetical protein	NA	NA	NA	NA
WP_002210623.1\|2421214_2421466_+	YciN family protein	NA	NA	NA	NA
WP_002210624.1\|2421584_2422631_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.6e-22	32.0
WP_002210625.1\|2422802_2423564_+	YciK family oxidoreductase	NA	NA	NA	NA
WP_002210626.1\|2423580_2424171_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_012229663.1\|2424293_2425328_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_041854882.1\|2425657_2426257_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_079993239.1\|2426213_2427119_-	PHP domain-containing protein	NA	NA	NA	NA
WP_002227930.1\|2427392_2427455_+	trp operon leader peptide	NA	NA	NA	NA
WP_002228454.1\|2427573_2429136_+	anthranilate synthase component 1	NA	NA	NA	NA
WP_002215981.1\|2429135_2429714_+	glutamine amidotransferase	A0A0P0IKJ1	Acinetobacter_phage	7.4e-30	37.3
WP_041854798.1\|2429728_2430727_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.0e-50	37.8
WP_012229668.1\|2430730_2432158_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	2.9e-35	39.0
WP_002210633.1\|2432314_2433505_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_012229670.1\|2433504_2434320_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_002210636.1\|2434662_2434977_+	BON domain-containing protein	NA	NA	NA	NA
WP_041854799.1\|2435534_2435714_-	hypothetical protein	NA	NA	NA	NA
WP_012229672.1\|2435713_2436904_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_002230897.1\|2437023_2437659_-	outer membrane protein OmpW	NA	NA	NA	NA
WP_002210638.1\|2437767_2437983_-	hypothetical protein	NA	NA	NA	NA
WP_002210639.1\|2438144_2438915_+	UPF0259 family protein	NA	NA	NA	NA
WP_002215979.1\|2439035_2439656_-	SulP family inorganic anion transporter	NA	NA	NA	NA
WP_041854800.1\|2439687_2440716_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	1.1e-07	25.2
WP_002210640.1\|2440946_2441489_+	septation protein A	NA	NA	NA	NA
WP_002210641.1\|2441568_2442018_+	acyl-CoA thioester hydrolase YciA	NA	NA	NA	NA
WP_002209743.1\|2442165_2443374_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210664.1\|2443887_2445234_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.9e-81	38.3
WP_002210665.1\|2445540_2446557_-	two-component system response regulator RssB	NA	NA	NA	NA
WP_002213759.1\|2447442_2447901_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210666.1\|2448601_2449066_+	YchJ family protein	NA	NA	NA	NA
WP_002230891.1\|2449149_2449998_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	7.0e-13	37.3
WP_002209743.1\|2450598_2451807_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211667.1\|2453732_2454539_+	exodeoxyribonuclease III	NA	NA	NA	NA
WP_002211668.1\|2454636_2455023_+	pyrimidine (deoxy)nucleoside triphosphate diphosphatase	NA	NA	NA	NA
WP_002211669.1\|2455035_2455326_-	DUF1496 domain-containing protein	NA	NA	NA	NA
WP_002211670.1\|2455322_2457248_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	4.2e-37	30.4
WP_002211671.1\|2457309_2458356_-	selenide, water dikinase SelD	NA	NA	NA	NA
WP_002211673.1\|2458580_2459132_-	NAD(P)H nitroreductase	NA	NA	NA	NA
WP_002230886.1\|2459294_2461145_+	signal peptide peptidase SppA	NA	NA	NA	NA
WP_002211675.1\|2461261_2462278_+	asparaginase	NA	NA	NA	NA
WP_002211676.1\|2462292_2462940_+	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L6K4	Tupanvirus	1.8e-21	33.0
WP_002217933.1\|2463073_2463346_-	YeaC family protein	NA	NA	NA	NA
WP_002211677.1\|2463416_2463830_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_002224141.1\|2464177_2465173_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_002211679.1\|2465486_2466362_+	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_002430110.1\|2466434_2467184_-	MipA/OmpV family protein	NA	NA	NA	NA
WP_002211681.1\|2467627_2469562_+	protein kinase YeaG	NA	NA	NA	NA
WP_002211683.1\|2471093_2472212_+	DMT family transporter	NA	NA	NA	NA
WP_002211684.1\|2472246_2473152_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002211685.1\|2473349_2474219_+	pirin family protein	NA	NA	NA	NA
WP_002216508.1\|2474483_2475686_+	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	7.6e-29	29.1
WP_002211686.1\|2475701_2477006_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_012229676.1\|2477470_2479006_+	SpoVR family protein	NA	NA	NA	NA
WP_002211688.1\|2479223_2479943_-	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA
WP_012229677.1\|2480186_2481755_+	sodium/proton antiporter NhaB	NA	NA	NA	NA
WP_002227934.1\|2481990_2482521_+	disulfide bond formation protein DsbB	NA	NA	NA	NA
WP_002214494.1\|2482937_2483294_-	hypothetical protein	NA	NA	NA	NA
WP_002211692.1\|2484385_2485126_+	hypothetical protein	NA	NA	NA	NA
WP_002211693.1\|2485142_2486342_+	cysteine desulfurase	A0A1X7QGF3	Faustovirus	2.4e-38	29.6
WP_002214492.1\|2486345_2487518_+	MFS transporter	NA	NA	NA	NA
2487602:2487632	attL	NA	NA	NA	NA
WP_002209743.1\|2487822_2489031_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211695.1\|2489251_2489671_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	5.7e-08	42.0
WP_002211696.1\|2489681_2490599_-	hypothetical protein	NA	NA	NA	NA
WP_002211697.1\|2490615_2491614_-	hypothetical protein	NA	NA	NA	NA
WP_002211698.1\|2491613_2494817_-	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	60.5
WP_002211699.1\|2495182_2495347_-	hypothetical protein	NA	NA	NA	NA
WP_002211700.1\|2495388_2496009_-\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	3.2e-55	57.0
WP_002211701.1\|2496064_2496280_-	hypothetical protein	NA	NA	NA	NA
WP_002214482.1\|2496422_2496974_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	9.5e-27	58.0
WP_002211704.1\|2497072_2498080_-	Bro-N domain-containing protein	A0A2H4J0P1	uncultured_Caudovirales_phage	4.1e-36	33.0
WP_002211705.1\|2498153_2498321_-	hypothetical protein	G9L6D7	Escherichia_phage	5.2e-13	61.8
WP_002211706.1\|2498444_2498876_+	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	2.5e-30	58.4
WP_002211708.1\|2499833_2500544_-	C40 family peptidase	K7P6F5	Enterobacteria_phage	1.3e-108	76.8
WP_002211709.1\|2500546_2501299_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	9.4e-102	67.7
WP_041854760.1\|2501418_2501877_-\|transposase	IS200/IS605-like element IS1541A family transposase	A0A1S5REW8	Helicobacter_phage	1.7e-08	24.1
WP_002210985.1\|2502794_2503769_+	L-Ala-D/L-Glu epimerase	NA	NA	NA	NA
WP_002210987.1\|2504960_2506577_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002227906.1\|2506819_2507803_+	zinc transporter ZntB	NA	NA	NA	NA
WP_001297096.1\|2508064_2508844_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|2508843_2509866_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002211738.1\|2509935_2511174_+\|integrase	site-specific integrase	Q20GI2	Phage_258-320	2.3e-121	53.3
2511200:2511230	attR	NA	NA	NA	NA

DBSCAN-SWA_13

2646238 : 2697194

Planktothrix_phage(20.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000255944.1\|2646238_2647261_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002213759.1\|2647510_2647969_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210983.1\|2648115_2649693_-	transcriptional regulator TyrR	NA	NA	NA	NA
WP_012229742.1\|2650028_2650475_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_002210981.1\|2650553_2651012_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_002210980.1\|2651021_2652083_-	TIGR01620 family protein	NA	NA	NA	NA
WP_002210979.1\|2652079_2653477_-	YcjX family protein	NA	NA	NA	NA
WP_002216375.1\|2653457_2653700_-	phage shock protein PspD	NA	NA	NA	NA
WP_002210977.1\|2653784_2654144_-	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_002210976.1\|2654143_2654371_-	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_002210975.1\|2654532_2655198_-	phage shock protein PspA	NA	NA	NA	NA
WP_002210974.1\|2655442_2656471_+	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_002213775.1\|2656635_2657094_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_012229746.1\|2657759_2659406_+	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_002210972.1\|2659402_2660368_+	peptide ABC transporter permease SapB	NA	NA	NA	NA
WP_002210971.1\|2660354_2661245_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_002210970.1\|2661244_2662237_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	8.8e-07	25.3
WP_012229750.1\|2662236_2663052_+	peptide ABC transporter ATP-binding protein SapF	G9BWD6	Planktothrix_phage	6.5e-16	30.9
WP_012229752.1\|2663441_2664722_+	CMD domain-containing protein	NA	NA	NA	NA
WP_002215910.1\|2665364_2666870_+	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA
WP_002210965.1\|2667124_2667715_+	YIP1 family protein	NA	NA	NA	NA
WP_012229762.1\|2667960_2668209_+	DUF3811 domain-containing protein	NA	NA	NA	NA
WP_002209743.1\|2668270_2669479_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210962.1\|2669791_2670397_+	glutathione transferase GstA	NA	NA	NA	NA
WP_002210960.1\|2671470_2672745_-\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	3.0e-84	42.4
WP_002210959.1\|2672926_2673580_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_002218323.1\|2673670_2673985_-	lipoprotein	NA	NA	NA	NA
WP_002218322.1\|2674042_2675155_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_002210956.1\|2675710_2676178_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_002213759.1\|2676405_2676864_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210955.1\|2677031_2677463_-	virulence master transcriptional regulator RovA	NA	NA	NA	NA
WP_002210954.1\|2678260_2679157_-	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA
WP_002210953.1\|2679288_2679528_-	DUF1289 domain-containing protein	NA	NA	NA	NA
WP_002210952.1\|2679701_2681339_+	phosphoethanolamine transferase EptA	NA	NA	NA	NA
WP_002210951.1\|2681561_2682161_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_002210950.1\|2682248_2683346_+	alkene reductase	NA	NA	NA	NA
WP_012229765.1\|2683566_2686509_-	RHS repeat protein	NA	NA	NA	NA
WP_002210948.1\|2686781_2687189_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_002227904.1\|2687300_2687948_+	ribonuclease T	NA	NA	NA	NA
WP_087768161.1\|2687962_2688058_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002210946.1\|2688256_2688607_-	Grx4 family monothiol glutaredoxin	NA	NA	NA	NA
WP_002210945.1\|2689046_2689898_+	C40 family peptidase	A0A2H4PI41	Streptomyces_phage	2.8e-17	43.9
WP_002210944.1\|2690275_2690854_+	superoxide dismutase [Fe]	Q56AR7	Bacillus_thuringiensis_phage	4.4e-43	45.6
WP_002216285.1\|2690957_2691047_-	YnhF family membrane protein	NA	NA	NA	NA
WP_002210943.1\|2691380_2692406_+	HTH-type transcriptional repressor PurR	C6ZCU4	Enterobacteria_phage	5.9e-30	31.4
WP_002210942.1\|2692494_2693427_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012229766.1\|2693716_2694919_+	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	4.1e-14	23.2
WP_012229767.1\|2695398_2696550_+	cyclopropane fatty acyl phospholipid synthase	A0A2K9L4K8	Tupanvirus	9.4e-85	46.0
WP_002213775.1\|2696735_2697194_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_14

2702780 : 2761298

Tupanvirus(20.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213759.1\|2702780_2703239_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_012229768.1\|2703383_2704592_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_000255944.1\|2705143_2706166_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|2706165_2706945_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002211803.1\|2706988_2708008_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_002211804.1\|2708278_2708701_-	cysteine desulfuration protein SufE	NA	NA	NA	NA
WP_012229769.1\|2708789_2710010_-	cysteine desulfurase SufS	Q2XUY6	environmental_halophage	4.8e-87	40.9
WP_002211806.1\|2710006_2711332_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_002211807.1\|2711306_2712053_-	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	1.9e-09	28.3
WP_002211808.1\|2712238_2713750_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_002211809.1\|2713764_2714136_-	Fe-S cluster assembly scaffold SufA	A0A218MM00	uncultured_virus	1.1e-15	35.6
WP_002211810.1\|2714751_2715168_-	hotdog fold thioesterase	NA	NA	NA	NA
WP_002211811.1\|2715289_2718346_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_012229770.1\|2718966_2720064_+	AI-2E family transporter YdiK	NA	NA	NA	NA
WP_002213759.1\|2720577_2721036_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211813.1\|2721374_2723759_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	4.1e-175	36.6
WP_002211815.1\|2725086_2726133_+	3-deoxy-7-phosphoheptulonate synthase	A0A0B5IW14	Pandoravirus	3.2e-84	49.0
WP_002211816.1\|2727816_2728833_-	lipoate--protein ligase A	NA	NA	NA	NA
WP_002216102.1\|2728957_2729422_-	lipoprotein	A0A217EQL1	Bacillus_phage	8.9e-10	37.0
WP_002211818.1\|2729362_2729545_+	hypothetical protein	NA	NA	NA	NA
WP_002211819.1\|2729701_2730088_-	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF	NA	NA	NA	NA
WP_002211820.1\|2730084_2730429_-	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE	NA	NA	NA	NA
WP_002211821.1\|2730425_2732090_-	lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase	NA	NA	NA	NA
WP_002211822.1\|2732086_2732992_-	4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase	NA	NA	NA	NA
WP_002211823.1\|2732988_2734992_-	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	A0A2K9KZK0	Tupanvirus	1.7e-17	24.6
WP_002211824.1\|2734988_2735972_-	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	A8CG95	Salmonella_phage	6.9e-36	33.2
WP_002211825.1\|2735958_2737113_-	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	A0A2K9L470	Tupanvirus	8.3e-33	28.8
WP_002213775.1\|2737641_2738100_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_012229772.1\|2738187_2738931_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A1M7XV31	Cedratvirus	9.2e-09	28.5
WP_002211827.1\|2738955_2739510_-	glutathione peroxidase	NA	NA	NA	NA
WP_002220283.1\|2739579_2740587_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
WP_002211829.1\|2740813_2741272_-	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_002213759.1\|2741671_2742130_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002211830.1\|2742318_2742615_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	4.2e-13	40.0
WP_002211831.1\|2742619_2745007_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_002211832.1\|2745020_2746004_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	7.6e-35	38.5
WP_152328947.1\|2746360_2746408_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_002211833.1\|2746502_2746859_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_002211834.1\|2746896_2747094_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_002227898.1\|2747190_2747742_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.6e-16	33.7
WP_002211836.1\|2747745_2749674_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	1.1e-127	37.1
WP_002216696.1\|2750064_2750277_+	KTSC domain-containing protein	A0A0K1LMB5	Caulobacter_phage	9.9e-09	42.0
WP_002211839.1\|2751035_2751287_-	hypothetical protein	NA	NA	NA	NA
WP_002211840.1\|2751605_2752289_+	MarC family NAAT transporter	NA	NA	NA	NA
WP_002216686.1\|2752410_2753073_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_002211842.1\|2753284_2754253_+	iron/manganese ABC transporter substrate-binding protein YfeA	NA	NA	NA	NA
WP_002211843.1\|2754249_2755140_+	iron/manganese ABC transporter ATP-binding protein YfeB	A0A1V0SKJ1	Klosneuvirus	2.9e-09	27.5
WP_002211844.1\|2755139_2756024_+	iron/manganese ABC transporter permease subunit YfeC	NA	NA	NA	NA
WP_002211845.1\|2756020_2756914_+	iron/manganese ABC transporter permease subunit YfeD	NA	NA	NA	NA
WP_002216683.1\|2756981_2757194_+	hypothetical protein	NA	NA	NA	NA
WP_002211846.1\|2757218_2758094_+	fructosamine kinase family protein	NA	NA	NA	NA
WP_002211847.1\|2758222_2758777_-	YniB family protein	NA	NA	NA	NA
WP_002209743.1\|2760089_2761298_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8

DBSCAN-SWA_15

2785661 : 2826896

Escherichia_phage(20.0%)

transposase,plate,protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213759.1\|2785661_2786120_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210847.1\|2786375_2787257_-\|protease	protease HtpX	NA	NA	NA	NA
WP_012229781.1\|2787730_2789800_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	3.8e-84	34.7
WP_002210849.1\|2789819_2790533_-	RNA chaperone ProQ	NA	NA	NA	NA
WP_002210850.1\|2790628_2791126_-	GAF domain-containing protein	NA	NA	NA	NA
WP_002367629.1\|2791357_2792605_+	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_012229782.1\|2792573_2795225_+	PqiB family protein	NA	NA	NA	NA
WP_002216613.1\|2796264_2796795_+\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002210856.1\|2797404_2798157_+	molecular chaperone	NA	NA	NA	NA
WP_012229783.1\|2798242_2800690_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002230846.1\|2800879_2801869_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_002210859.1\|2802076_2802316_+	YebV family protein	NA	NA	NA	NA
WP_002215943.1\|2802425_2802815_-	ASCH domain-containing protein	NA	NA	NA	NA
WP_000255944.1\|2803221_2804244_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|2804243_2805023_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002210703.1\|2805073_2805307_-	hypothetical protein	NA	NA	NA	NA
WP_002210701.1\|2805627_2807112_+	NCS1 family nucleobase:cation symporter-1	NA	NA	NA	NA
WP_002210700.1\|2807357_2808122_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.9e-41	39.8
WP_002210699.1\|2808191_2808656_+	ribonuclease HI	J9Q745	Salmonella_phage	9.1e-47	53.9
WP_002210698.1\|2808710_2809430_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_002210697.1\|2809474_2810230_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_002228041.1\|2810301_2811690_+	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	4.5e-09	36.8
WP_002220059.1\|2811732_2812515_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_144405495.1\|2813374_2814190_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SKP9	Klosneuvirus	2.1e-22	28.1
WP_002209743.1\|2814637_2815846_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002209743.1\|2816332_2817541_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211579.1\|2818868_2819630_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_002211580.1\|2819786_2820332_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_012229788.1\|2820532_2823208_-	type VI secretion system ATPase TssH	A0A223W0B1	Agrobacterium_phage	1.0e-81	32.3
WP_002211582.1\|2823990_2825871_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012229789.1\|2825870_2826896_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_16

2946964 : 3021385

uncultured_virus(15.38%)

transposase,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213775.1\|2946964_2947423_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002213087.1\|2948813_2949167_+	purine nucleoside phosphoramidase	NA	NA	NA	NA
WP_002213088.1\|2949201_2949591_+	YcfL family protein	NA	NA	NA	NA
WP_002213089.1\|2949631_2950207_+	penicillin-binding protein activator LpoB	NA	NA	NA	NA
WP_042666702.1\|2950187_2951054_+	thiamine kinase	NA	NA	NA	NA
WP_002215854.1\|2951136_2952156_+	beta-N-acetylhexosaminidase	NA	NA	NA	NA
WP_002213095.1\|2952283_2952826_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_002213097.1\|2953200_2954505_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002209743.1\|2955561_2956770_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002210885.1\|2957733_2958231_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_012229814.1\|2958393_2960547_-	chemotaxis protein CheA	NA	NA	NA	NA
WP_012229815.1\|2960563_2961829_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_002210888.1\|2961825_2962713_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_002210889.1\|2962917_2963499_-	flagellar transcriptional regulator FlhC	NA	NA	NA	NA
WP_012229816.1\|2965041_2967741_-	magnesium-translocating P-type ATPase	M1HM40	Paramecium_bursaria_Chlorella_virus	1.1e-43	25.6
WP_002210891.1\|2968141_2968840_-	MgtC family protein	G3MA03	Bacillus_virus	2.1e-15	40.0
WP_002210892.1\|2971882_2972074_-	protein DsrB	NA	NA	NA	NA
WP_002210893.1\|2972288_2972501_-	transcription antiterminator/RNA stability regulator CspE	A0A1W6JNX5	Morganella_phage	2.0e-25	80.0
WP_002214048.1\|2973041_2976224_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	62.3
WP_002210897.1\|2976630_2977641_+	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
WP_002214045.1\|2977923_2978457_+	YlaC family protein	NA	NA	NA	NA
WP_002210900.1\|2978962_2979412_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_002210901.1\|2979503_2980403_+	Kdo hydroxylase family protein	NA	NA	NA	NA
WP_002210902.1\|2980705_2980909_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	9.8e-06	44.6
WP_002210903.1\|2981210_2982536_-	AppA family phytase/histidine-type acid phosphatase	NA	NA	NA	NA
WP_002210904.1\|2982836_2983010_-	hypothetical protein	NA	NA	NA	NA
WP_002227977.1\|2983067_2983451_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002210906.1\|2983610_2984468_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002210907.1\|2985387_2986968_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	2.5e-35	50.7
WP_002210908.1\|2987087_2987348_+	hypothetical protein	NA	NA	NA	NA
WP_002210909.1\|2987607_2988651_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002210910.1\|2988797_2990051_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.8e-20	90.7
WP_002218214.1\|2990181_2990808_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_002210912.1\|2990800_2991247_+	NUDIX hydrolase	NA	NA	NA	NA
WP_002210913.1\|2991433_2992549_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_002210914.1\|2992606_2993233_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_002230790.1\|2993293_2994664_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	3.4e-110	45.8
WP_002210916.1\|2994851_2995475_+	porin family protein	NA	NA	NA	NA
WP_002230788.1\|2995685_2996357_+	two-component system response regulator PhoP	NA	NA	NA	NA
WP_002210918.1\|2996362_2997817_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_002210919.1\|2997900_2999022_+	cupin domain-containing protein	NA	NA	NA	NA
WP_002210920.1\|2999254_3000490_-	peptidase T	NA	NA	NA	NA
WP_002210921.1\|3000819_3001656_-	NAD-dependent protein deacylase	A0A2I7S9Y2	Vibrio_phage	2.6e-20	34.0
WP_002216178.1\|3001704_3001857_-	hypothetical protein	NA	NA	NA	NA
WP_002216175.1\|3001849_3002620_-	N-acetylglucosamine kinase	NA	NA	NA	NA
WP_002210922.1\|3002638_3003886_-	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA
WP_002210923.1\|3003885_3004590_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	1.4e-35	43.3
WP_002222341.1\|3004582_3005785_-	lipoprotein-releasing ABC transporter permease subunit LolC	NA	NA	NA	NA
WP_002210924.1\|3006054_3009501_+	transcription-repair coupling factor	NA	NA	NA	NA
WP_012229817.1\|3009739_3010279_-	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_002209743.1\|3010608_3011817_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002211577.1\|3011841_3013032_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002211576.1\|3013016_3013625_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_002211575.1\|3013729_3014254_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002211574.1\|3014277_3015780_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_002211573.1\|3016105_3016591_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_002211572.1\|3016843_3017383_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002211571.1\|3017386_3018736_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_012228761.1\|3019414_3020890_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-181	100.0
WP_041854807.1\|3020899_3021385_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA

DBSCAN-SWA_17

3048072 : 3123668

Escherichia_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002209743.1\|3048072_3049281_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_000255944.1\|3052118_3053141_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|3053140_3053920_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_002210424.1\|3054259_3054646_-	8-oxo-dGTP diphosphatase MutT	A0A0B5CYJ3	Rhizoctonia_fumigata_mycovirus	8.4e-06	30.4
WP_002210426.1\|3054755_3057470_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_002210427.1\|3057547_3058081_-	secA regulator SecM	NA	NA	NA	NA
WP_002210428.1\|3058109_3058634_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_002228285.1\|3058800_3059721_-	UDP-3-O-acyl-N-acetylglucosamine deacetylase	NA	NA	NA	NA
WP_002210430.1\|3059820_3060972_-	cell division protein FtsZ	NA	NA	NA	NA
WP_002210431.1\|3061044_3062301_-	cell division protein FtsA	NA	NA	NA	NA
WP_002228100.1\|3062327_3063155_-	cell division protein FtsQ	NA	NA	NA	NA
WP_002210432.1\|3063156_3064077_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_002216457.1\|3064069_3065545_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_002210434.1\|3065682_3066753_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA
WP_012229821.1\|3066749_3067952_-	cell division protein FtsW	NA	NA	NA	NA
WP_002210436.1\|3067951_3069268_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA
WP_012229822.1\|3069270_3070353_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_002210438.1\|3070346_3071723_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_002210439.1\|3071719_3073207_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA
WP_002210440.1\|3073193_3074957_-	peptidoglycan glycosyltransferase FtsI	NA	NA	NA	NA
WP_002210441.1\|3075022_3075340_-	cell division protein FtsL	NA	NA	NA	NA
WP_002210442.1\|3075336_3076299_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_002210443.1\|3076301_3076760_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_087768171.1\|3077314_3077404_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002210446.1\|3077862_3078303_+	L-alanine exporter AlaE	NA	NA	NA	NA
WP_002210447.1\|3078433_3079444_-	catabolite repressor/activator	NA	NA	NA	NA
WP_002213775.1\|3079949_3080408_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002210448.1\|3080606_3081101_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_002228103.1\|3081103_3082831_-	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	7.8e-59	29.4
WP_002216437.1\|3083290_3085096_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	3.5e-38	23.2
WP_002216434.1\|3085622_3086579_-	transcriptional regulator LeuO	NA	NA	NA	NA
WP_002210452.1\|3087256_3087472_+	hypothetical protein	NA	NA	NA	NA
WP_002213759.1\|3087900_3088359_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210453.1\|3088505_3090068_+	2-isopropylmalate synthase	NA	NA	NA	NA
WP_002210454.1\|3090070_3091162_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_002210455.1\|3091163_3092594_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_002210456.1\|3092608_3093211_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_002224086.1\|3093451_3094633_-	MFS transporter	NA	NA	NA	NA
WP_002210461.1\|3095296_3096958_+	HTH-type transcriptional regulator SgrR	NA	NA	NA	NA
WP_002214274.1\|3097897_3098890_+	thiamine ABC transporter substrate binding subunit	NA	NA	NA	NA
WP_002214276.1\|3098865_3100473_+	thiamine/thiamine pyrophosphate ABC transporter permease ThiP	NA	NA	NA	NA
WP_002210464.1\|3100459_3101170_+	thiamine ABC transporter ATP-binding protein ThiQ	G3M9Y6	Bacillus_virus	1.0e-20	34.1
WP_002210465.1\|3101238_3102006_-	DedA family protein	NA	NA	NA	NA
WP_002210466.1\|3102201_3104571_+	DNA polymerase II	A0A0P0YM26	Yellowstone_lake_phycodnavirus	1.5e-31	25.5
WP_002220588.1\|3104995_3107902_+	RNA polymerase-associated protein RapA	A0A1B1IUI1	uncultured_Mediterranean_phage	3.0e-23	37.6
WP_002213759.1\|3108283_3108742_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002210468.1\|3108868_3109222_-	hypothetical protein	NA	NA	NA	NA
WP_012229833.1\|3112746_3114354_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002210471.1\|3115815_3116307_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002214737.1\|3116299_3116665_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_002210473.1\|3116670_3117288_-	DUF3540 domain-containing protein	NA	NA	NA	NA
WP_002214739.1\|3117280_3118384_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_002224087.1\|3118409_3120629_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_000255944.1\|3122645_3123668_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0

DBSCAN-SWA_18

3160712 : 3203453

Tupanvirus(16.67%)

transposase,plate,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012229860.1\|3160712_3162476_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_002211941.1\|3162439_3163525_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002214552.1\|3163499_3164081_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_002211943.1\|3164080_3164533_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012229861.1\|3164557_3165925_+	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_041854811.1\|3166136_3166760_-	hypothetical protein	NA	NA	NA	NA
WP_002227996.1\|3167442_3169038_+	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	6.1e-58	28.5
WP_002211947.1\|3169265_3169919_+	hypothetical protein	NA	NA	NA	NA
WP_002211948.1\|3169983_3170754_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_012229863.1\|3170755_3172030_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_002211950.1\|3172564_3173875_-	darobactin maturation radical SAM/SPASM protein DarE	NA	NA	NA	NA
WP_002211951.1\|3173884_3174553_-	darobactin export ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-35	40.0
WP_012229864.1\|3174554_3175817_-	darobactin export ABC transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_002209743.1\|3176276_3177485_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_002227980.1\|3179585_3179798_-	peptide antibiotic darobactin C	NA	NA	NA	NA
WP_002211956.1\|3180054_3180897_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_002224699.1\|3180917_3182057_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	6.1e-36	30.2
WP_002211958.1\|3182330_3183200_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002211960.1\|3184440_3185103_+	GTP cyclohydrolase I FolE	R9TJA5	Vibrio_phage	5.8e-55	53.5
WP_012229866.1\|3185157_3186324_+	DUF418 family protein	NA	NA	NA	NA
WP_002211963.1\|3187071_3188064_+	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_002211964.1\|3188293_3189814_+	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	2.6e-10	29.9
WP_012229868.1\|3189834_3190845_+	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_002213775.1\|3191066_3191525_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002211966.1\|3191965_3192703_-	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_002211969.1\|3195023_3195908_-	cytidine deaminase	NA	NA	NA	NA
WP_002211970.1\|3196233_3196929_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_002211971.1\|3196925_3197333_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_002211973.1\|3197574_3198756_-	MFS transporter	NA	NA	NA	NA
WP_002211974.1\|3199069_3200323_-	LVIVD repeat-containing protein	NA	NA	NA	NA
WP_002211975.1\|3200340_3201417_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002228565.1\|3202114_3202777_+	hypothetical protein	NA	NA	NA	NA
WP_002213775.1\|3202994_3203453_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA

DBSCAN-SWA_19

3310167 : 3353980

Escherichia_phage(22.22%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_100067904.1\|3310167_3311522_-\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7
WP_002213775.1\|3311672_3312131_+\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_002228401.1\|3312318_3313026_+	DnaA inactivator Hda	NA	NA	NA	NA
WP_002208565.1\|3313237_3313594_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	6.1e-19	45.3
WP_002217569.1\|3313700_3315185_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_002208563.1\|3315515_3316580_+	AI-2E family transporter	NA	NA	NA	NA
WP_012229890.1\|3317162_3317858_+	hypothetical protein	NA	NA	NA	NA
WP_002224836.1\|3318524_3318995_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_002227068.1\|3318997_3319567_-	glycine cleavage system transcriptional repressor	NA	NA	NA	NA
WP_002227834.1\|3319731_3320613_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_002208557.1\|3320630_3321689_+	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_002213759.1\|3321863_3322322_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002208555.1\|3322469_3323183_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	2.9e-36	34.8
WP_002208554.1\|3323401_3324268_+	zinc metallopeptidase	NA	NA	NA	NA
WP_002208553.1\|3324361_3324814_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_002231050.1\|3324815_3326867_+\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_002208551.1\|3327120_3327315_-	YpfN family protein	NA	NA	NA	NA
WP_002208550.1\|3327382_3328060_-	M15 family metallopeptidase	NA	NA	NA	NA
WP_002208549.1\|3328056_3329184_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_002208548.1\|3329185_3329584_-	ArsC family reductase	NA	NA	NA	NA
WP_002208547.1\|3329743_3330217_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_002208546.1\|3330527_3331616_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002231049.1\|3331710_3333480_+	iron ABC transporter permease	NA	NA	NA	NA
WP_012229891.1\|3333472_3334543_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.5e-31	37.1
WP_002214539.1\|3334556_3334763_+	hypothetical protein	NA	NA	NA	NA
WP_041854899.1\|3335023_3336694_+	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_002208542.1\|3336751_3337927_+	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_002208541.1\|3338686_3339235_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_002208540.1\|3339523_3340108_-	hypothetical protein	NA	NA	NA	NA
WP_001297096.1\|3340221_3341001_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|3341000_3342023_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002212121.1\|3342965_3344330_-	LOG family protein	NA	NA	NA	NA
WP_002212122.1\|3344482_3345328_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	1.2e-41	37.9
WP_002212123.1\|3345459_3346011_+	SecY-interacting protein	NA	NA	NA	NA
WP_002213759.1\|3346700_3347159_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002217139.1\|3347456_3348152_+	hypothetical protein	NA	NA	NA	NA
WP_002217141.1\|3348184_3348778_+	hypothetical protein	NA	NA	NA	NA
WP_002208668.1\|3348848_3349298_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_002208667.1\|3349447_3350557_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.5e-50	34.2
WP_002208666.1\|3350692_3351163_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.5e-30	47.7
WP_002208665.1\|3351183_3351600_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_002208664.1\|3351840_3352830_+	thiamine-phosphate kinase	NA	NA	NA	NA
WP_002208663.1\|3352822_3353308_+	phosphatidylglycerophosphatase A	NA	NA	NA	NA
WP_002213759.1\|3353521_3353980_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

DBSCAN-SWA_20

3550922 : 3606341

uncultured_Mediterranean_phage(25.0%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012228761.1\|3550922_3552398_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-181	100.0
WP_002209980.1\|3553145_3554261_-	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	3.0e-96	50.7
WP_002209979.1\|3554264_3555149_-	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	3.1e-80	51.0
WP_002209978.1\|3555328_3555751_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_002209977.1\|3555750_3556314_-	YqgE/AlgH family protein	NA	NA	NA	NA
WP_002209976.1\|3556429_3557389_-	glutathione synthase	NA	NA	NA	NA
WP_002209975.1\|3557414_3558146_-	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_012229925.1\|3558254_3558437_-	hypothetical protein	NA	NA	NA	NA
WP_002209973.1\|3558415_3559123_-	deoxyribonuclease I	NA	NA	NA	NA
WP_002228653.1\|3559220_3559733_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_002209971.1\|3559925_3561080_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-126	62.1
WP_002209969.1\|3562268_3564248_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_002209968.1\|3564407_3564728_+	non-heme iron oxygenase ferredoxin subunit	NA	NA	NA	NA
WP_071525520.1\|3564761_3564872_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_002209967.1\|3565017_3565770_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_002209965.1\|3566260_3568255_+	transketolase	NA	NA	NA	NA
WP_002213759.1\|3568562_3569021_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_012229926.1\|3569110_3569275_+	Beta-galactosidase C-terminal domain	NA	NA	NA	NA
WP_002209896.1\|3569386_3569698_+	PTS transporter subunit EIIB	A0A2I7SAJ6	Vibrio_phage	3.3e-08	39.2
WP_002215759.1\|3570054_3571314_-	maltoporin	NA	NA	NA	NA
WP_002209894.1\|3571585_3572659_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.9e-72	43.6
WP_002213775.1\|3572839_3573298_-\|transposase	IS200/IS605-like element IS1541B family transposase	NA	NA	NA	NA
WP_012229927.1\|3573681_3576051_-	glycoside hydrolase family 31 protein	NA	NA	NA	NA
WP_002209891.1\|3576201_3577509_-	MFS transporter	NA	NA	NA	NA
WP_002209890.1\|3577902_3578985_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002209889.1\|3579207_3579786_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_002209888.1\|3579809_3580664_-	tagatose bisphosphate family class II aldolase	NA	NA	NA	NA
WP_002209887.1\|3580773_3582261_-	DUF2264 domain-containing protein	NA	NA	NA	NA
WP_002209886.1\|3582383_3583991_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_012229928.1\|3584011_3585238_-	anaerobic sulfatase maturase	A0A1B2IC15	Erwinia_phage	5.4e-06	33.1
WP_002209884.1\|3585668_3586727_-	glycoside hydrolase family 105 protein	NA	NA	NA	NA
WP_002230627.1\|3586742_3587498_-	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	6.7e-15	29.7
WP_002209882.1\|3587693_3588860_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_002209881.1\|3588862_3589303_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_002209880.1\|3589388_3590279_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
WP_012229929.1\|3590268_3591057_-	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA
WP_002209878.1\|3591103_3591601_-	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA
WP_012229932.1\|3591618_3592785_-	SIS domain-containing protein	NA	NA	NA	NA
WP_002209876.1\|3592781_3594080_-	tagatose-bisphosphate aldolase subunit KbaZ	NA	NA	NA	NA
WP_002209875.1\|3594129_3594906_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002209873.1\|3595745_3597299_+	sulfatase	A0A1V0SA98	Catovirus	5.4e-19	26.1
WP_002213759.1\|3597750_3598209_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002208669.1\|3598415_3599384_-	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.9e-46	39.7
WP_002208670.1\|3599394_3601242_-	protein translocase subunit SecD	NA	NA	NA	NA
WP_002208671.1\|3601269_3601605_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	6.4e-10	35.6
WP_002208672.1\|3601716_3602841_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.2e-90	45.8
WP_002208673.1\|3602933_3604004_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002216927.1\|3604206_3604788_+	ACP phosphodiesterase	NA	NA	NA	NA
WP_002208675.1\|3605066_3605669_+	peroxiredoxin C	NA	NA	NA	NA
WP_041854826.1\|3605882_3606341_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

DBSCAN-SWA_21

3645324 : 3705009

Escherichia_phage(44.44%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012229943.1\|3645324_3646680_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_002212137.1\|3646708_3647557_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_002212136.1\|3647566_3648325_-	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	1.4e-23	40.7
WP_002212135.1\|3648548_3649745_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_002212134.1\|3649958_3650516_-	ribosome recycling factor	NA	NA	NA	NA
WP_012229944.1\|3650651_3651377_-	UMP kinase	NA	NA	NA	NA
WP_002212132.1\|3651585_3652443_-	elongation factor Ts	NA	NA	NA	NA
WP_002221800.1\|3652570_3653296_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_002212129.1\|3654504_3657186_+	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_002212128.1\|3657360_3658185_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_002212127.1\|3658308_3658698_+	DUF3461 family protein	NA	NA	NA	NA
WP_002212126.1\|3658787_3659237_-	flavodoxin	NA	NA	NA	NA
WP_002212125.1\|3659264_3660038_-\|tRNA	tRNA pseudouridine(65) synthase TruC	NA	NA	NA	NA
WP_002212124.1\|3660037_3660370_-	YqcC family protein	NA	NA	NA	NA
WP_002209872.1\|3660619_3661054_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_000255944.1\|3661110_3662133_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|3662132_3662912_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_012229945.1\|3662962_3664483_-	aminotransferase class V-fold PLP-dependent enzyme	G9BWD6	Planktothrix_phage	5.3e-35	41.1
WP_002208733.1\|3664463_3665117_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_002208734.1\|3665113_3665782_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_012229946.1\|3665794_3666583_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_002208736.1\|3666910_3667744_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_002208738.1\|3668053_3668257_+	oxalurate catabolism protein HpxX	NA	NA	NA	NA
WP_002208739.1\|3668253_3669651_+	AtzE family amidohydrolase	NA	NA	NA	NA
WP_002264506.1\|3669760_3670147_+	oxalurate catabolism protein HpxZ	NA	NA	NA	NA
WP_002208741.1\|3670383_3671583_+	MFS transporter	NA	NA	NA	NA
WP_002208742.1\|3671742_3672516_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_002208743.1\|3672512_3672854_+	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_002208744.1\|3673025_3673538_+	transcriptional repressor MprA	NA	NA	NA	NA
WP_002208745.1\|3673921_3675094_+	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_002208746.1\|3675132_3676668_+	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_012229947.1\|3676790_3677957_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_002216643.1\|3678208_3678646_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	2.6e-11	36.6
WP_002208749.1\|3678815_3679565_+	DTW domain-containing protein	NA	NA	NA	NA
WP_002223249.1\|3679607_3682250_+	bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002208751.1\|3682425_3683781_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_002208752.1\|3683842_3684184_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_002217405.1\|3690094_3692668_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.4e-128	34.9
WP_002209471.1\|3692797_3693529_-	polyphenol oxidase	NA	NA	NA	NA
WP_002231132.1\|3693530_3694508_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_002209469.1\|3694643_3695375_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_002209468.1\|3695729_3696092_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_041854827.1\|3696423_3696882_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002228330.1\|3697164_3698322_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_002209465.1\|3698426_3699548_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_002228238.1\|3699560_3700631_-	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.5e-89	51.4
WP_002223245.1\|3700863_3701580_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001297096.1\|3701733_3702513_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_000255944.1\|3702512_3703535_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_002213759.1\|3704550_3705009_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

DBSCAN-SWA_22

3984779 : 4048024

Bacillus_phage(22.22%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002216348.1\|3984779_3985616_+\|protease	rhomboid family intramembrane serine protease GlpG	NA	NA	NA	NA
WP_002208930.1\|3985650_3986409_+	DeoR/GlpR family transcriptional regulator	NA	NA	NA	NA
WP_100067904.1\|3986601_3987955_+\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7
WP_002215753.1\|3988317_3989547_+	MFS transporter	NA	NA	NA	NA
WP_002209605.1\|3989695_3989899_-	hypothetical protein	NA	NA	NA	NA
WP_002215752.1\|3990019_3990178_+	hypothetical protein	NA	NA	NA	NA
WP_002215751.1\|3990256_3990838_+	DUF4225 domain-containing protein	NA	NA	NA	NA
WP_002215750.1\|3990851_3991184_-	hypothetical protein	NA	NA	NA	NA
WP_012230118.1\|3993892_3995281_-\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
WP_002209609.1\|3995464_3996394_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_002209610.1\|3996393_3997068_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_002209611.1\|3997064_3998036_-	formate dehydrogenase subunit beta	NA	NA	NA	NA
WP_002228725.1\|3998048_4001096_-	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA
WP_002209612.1\|4001292_4002117_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_002209614.1\|4002552_4003176_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	57.4
WP_002209615.1\|4003519_4005469_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_002217114.1\|4005658_4005991_+	hypothetical protein	NA	NA	NA	NA
WP_002209617.1\|4006522_4006999_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_002209618.1\|4007167_4007524_-	YibL family ribosome-associated protein	NA	NA	NA	NA
WP_002209619.1\|4007772_4008327_-	mannitol operon repressor	NA	NA	NA	NA
WP_002209620.1\|4008533_4009697_-	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_002209621.1\|4009833_4011765_-	PTS mannitol transporter subunit IICBA	NA	NA	NA	NA
WP_002209622.1\|4012414_4013134_-	DUF3053 domain-containing protein	NA	NA	NA	NA
WP_012303322.1\|4013228_4013459_-	hypothetical protein	NA	NA	NA	NA
WP_002209623.1\|4013606_4015676_-\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_002209624.1\|4015685_4016600_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
WP_002209626.1\|4016927_4017500_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_002209627.1\|4017496_4017952_+	N-acetyltransferase	A0A1X9I6I8	Streptococcus_phage	1.4e-15	32.2
WP_002209628.1\|4018309_4018969_+	OmpA family lipoprotein	NA	NA	NA	NA
WP_002209629.1\|4019099_4019744_-	transcriptional regulator	NA	NA	NA	NA
WP_002209630.1\|4020243_4021224_+	glyoxylate/hydroxypyruvate reductase GhrB	A0A1J0F959	Only_Syngen_Nebraska_virus	9.3e-25	29.3
WP_012230123.1\|4021493_4023557_+	alpha-amylase	NA	NA	NA	NA
WP_002209632.1\|4023971_4024415_+	hypothetical protein	NA	NA	NA	NA
WP_002228155.1\|4024869_4026135_+	valine--pyruvate transaminase	NA	NA	NA	NA
WP_002209634.1\|4026247_4027906_-	putative transporter	NA	NA	NA	NA
WP_002209635.1\|4028278_4028743_-	heat shock chaperone IbpB	A0A0E3FB97	Synechococcus_phage	3.3e-12	32.2
WP_002209636.1\|4029023_4029437_-	heat shock chaperone IbpA	A0A127KM93	Cyanophage	7.1e-19	36.8
WP_002209637.1\|4029804_4030143_+	YceK/YidQ family lipoprotein	NA	NA	NA	NA
WP_002209638.1\|4031005_4031968_+	threonine/serine dehydratase	NA	NA	NA	NA
WP_000255944.1\|4032731_4033754_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001297096.1\|4033753_4034533_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_100067904.1\|4035072_4036426_+\|transposase	IS3-like element IS1661 family transposase	A0A1B1P773	Bacillus_phage	1.1e-55	44.7
WP_002208933.1\|4036588_4037473_-	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_002208934.1\|4037705_4040141_-	bifunctional aspartate kinase/homoserine dehydrogenase II	NA	NA	NA	NA
WP_012230127.1\|4040143_4041304_-	cystathionine gamma-synthase	NA	NA	NA	NA
WP_002208935.1\|4041681_4041999_+	met regulon transcriptional regulator MetJ	NA	NA	NA	NA
WP_002208936.1\|4042347_4042803_+	hypothetical protein	NA	NA	NA	NA
WP_042666681.1\|4043408_4043867_-\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA
WP_002216737.1\|4044055_4044271_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_012230129.1\|4044523_4046722_+	primosomal protein N'	NA	NA	NA	NA
WP_042666681.1\|4047565_4048024_+\|transposase	IS200/IS605-like element IS1541A family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_010157

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10375 : 62775

Wolbachia_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002213006.1\|10375_11344_+\|protease	T3SS effector cysteine protease YopT	NA	NA	NA	NA
WP_002213004.1\|11343_11742_+	type III secretion system chaperone SycT	NA	NA	NA	NA
WP_002222515.1\|12446_12866_+	hypothetical protein	NA	NA	NA	NA
WP_116442925.1\|13614_13860_+\|transposase	transposase	NA	NA	NA	NA
WP_002353322.1\|14101_15205_-	type III secretion system effector YopM	NA	NA	NA	NA
WP_002229781.1\|15598_15808_-	hypothetical protein	NA	NA	NA	NA
WP_002212987.1\|16933_17854_-	type III secretion system translocon subunit YopD	NA	NA	NA	NA
WP_002212985.1\|17872_19078_-	type III secretion system translocon subunit YopB	NA	NA	NA	NA
WP_002222758.1\|19055_19562_-	type III secretion system chaperone SycD/LcrH	NA	NA	NA	NA
WP_012228705.1\|19574_20555_-	type III secretion system needle tip protein LcrV	NA	NA	NA	NA
WP_012228713.1\|20556_20844_-	type III secretion system chaperone LcrG	NA	NA	NA	NA
WP_002220918.1\|20885_21326_-	type III secretion system chaperone LcrR	NA	NA	NA	NA
WP_002212971.1\|21322_23437_-	SctV family type III secretion system export apparatus subunit LcrD	NA	NA	NA	NA
WP_002229791.1\|23423_23768_-	type III secretion system chaperone YscY	NA	NA	NA	NA
WP_002212969.1\|23764_24133_-	type III secretion system protein YscX	NA	NA	NA	NA
WP_002229794.1\|24129_24501_-	type III secretion chaperone SycN	NA	NA	NA	NA
WP_002212965.1\|24487_24766_-	type III secretion system gatekeeper subunit TyeA	NA	NA	NA	NA
WP_002212958.1\|24746_25628_-	SctW family type III secretion system gatekeeper subunit YopN	NA	NA	NA	NA
WP_002212955.1\|25825_27145_+	SctN family type III secretion system ATPase YscN	NA	NA	NA	NA
WP_002212952.1\|27141_27606_+	type III secretion system central stalk protein YscO	NA	NA	NA	NA
WP_002212950.1\|27605_28973_+	type III secretion system needle length determinant YscP	NA	NA	NA	NA
WP_002212948.1\|28969_29893_+	SctQ family type III secretion system cytoplasmic ring protein YscQ	NA	NA	NA	NA
WP_002212947.1\|29889_30543_+	SctR family type III secretion system export apparatus subunit YscR	NA	NA	NA	NA
WP_002212945.1\|30544_30811_+	SctS family type III secretion system export apparatus subunit YscS	NA	NA	NA	NA
WP_002212938.1\|30807_31593_+	SctT family type III secretion system export apparatus subunit YscT	NA	NA	NA	NA
WP_012228726.1\|31592_32657_+	type III secretion system export apparatus switch protein YscU	NA	NA	NA	NA
WP_002222527.1\|33231_33627_+	type III secretion system pilotin YscW	NA	NA	NA	NA
WP_002212931.1\|33750_34566_+	virulence regulon transcriptional activator VirF	NA	NA	NA	NA
WP_002229797.1\|34644_34743_+	type III secretion system protein YscA	NA	NA	NA	NA
WP_002212925.1\|34968_35382_+	type III secretion system chaperone YscB	NA	NA	NA	NA
WP_002212923.1\|35387_37211_+	SctC family type III secretion system outer membrane ring subunit YscC	NA	NA	NA	NA
WP_002212919.1\|37207_38467_+	SctD family type III secretion system inner membrane ring subunit YscD	NA	NA	NA	NA
WP_002212917.1\|38463_38664_+	type III secretion system co-chaperone YscE	NA	NA	NA	NA
WP_002212916.1\|38664_38928_+	type III secretion system needle filament protein YscF	NA	NA	NA	NA
WP_002229801.1\|38929_39277_+	type III secretion system chaperone YscG	NA	NA	NA	NA
WP_002212915.1\|39273_39771_+	T3SS polymerization control protein YopR	NA	NA	NA	NA
WP_002212914.1\|39771_40119_+	SctI family type III secretion system inner rod subunit LcrO	NA	NA	NA	NA
WP_002212912.1\|40125_40860_+	SctJ family type III secretion inner membrane ring lipoprotein YscJ	NA	NA	NA	NA
WP_002361471.1\|40859_41489_+	type III secretion system sorting platform protein YscK	NA	NA	NA	NA
WP_010981371.1\|41434_42100_+	SctL family type III secretion system stator protein YscL	NA	NA	NA	NA
WP_002212907.1\|42324_42672_+	type III secretion system exported negative regulator LcrQ/YscM1	NA	NA	NA	NA
WP_002213278.1\|44760_46167_-	T3SS effector protein-tyrosine-phosphatase YopH	NA	NA	NA	NA
WP_002213287.1\|47849_48716_-	type III secretion system effector acetyltransferase YopJ	NA	NA	NA	NA
WP_002397022.1\|49111_51301_-	type III secretion system effector protein kinase YopO/YpkA	NA	NA	NA	NA
WP_002229809.1\|51308_51758_-	hypothetical protein	NA	NA	NA	NA
WP_002213291.1\|52488_52728_-	hypothetical protein	NA	NA	NA	NA
WP_002213292.1\|53899_54778_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_002233140.1\|54758_54833_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_002229817.1\|55074_55329_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_002233137.1\|55466_55715_-	phospholipase	A0A1B2LRT6	Wolbachia_phage	9.2e-06	47.1
WP_002213294.1\|56131_56539_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	4.7e-07	29.2
WP_002213008.1\|56562_56880_-\|transposase	transposase	NA	NA	NA	NA
WP_002213246.1\|57051_57510_-	hypothetical protein	NA	NA	NA	NA
WP_042469136.1\|57578_57848_+\|transposase	transposase	NA	NA	NA	NA
WP_002213256.1\|60459_62775_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	1.0e-279	51.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010158

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_010159

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_010157

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection