CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010167	Brucella suis ATCC 23445 chromosome II, complete sequence	1 crisprs	csa3,cas3,DEDDh,WYL	0	0	0	0
NC_010169	Brucella suis ATCC 23445 chromosome I, complete sequence	1 crisprs	csa3,DEDDh	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010167_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010167_1

179768-179864

Orphan

Consensus_repeat	Method
ATGGACTTCTTGGAAGTCCATGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010167_1

>merge|NC_010167|1|179768-179864|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCACCCCCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTTATGGACTTCTTAGAAGTCCATGCC

>NC_010167|1|1|179768-179864|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCC	ACCCCCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTT
ATGGACTTCTTAGAAGTCCATGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010167.1\|WP_002966393.1\|174504_175200_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237438
NC_010167.1\|WP_006073322.1\|182377_183226_+\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
NC_010167.1\|WP_006073325.1\|189386_189860_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_010167.1\|WP_006199006.1\|177300_178692_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NC_010167.1\|WP_004692532.1\|168280_169108_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381357
NC_010167.1\|WP_006073323.1\|184646_187565_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
NC_010167.1\|WP_006015192.1\|178842_179097_-\|hypothetical-protein	unknown	unknown	unknown
NC_010167.1\|WP_006073324.1\|188772_189333_+\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NC_010167.1\|WP_002971287.1\|187756_188428_+\|hypothetical-protein	unknown	unknown	unknown
NC_010167.1\|WP_006018995.1\|192375_193920_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NC_010167.1\|WP_002967189.1\|170357_171014_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NC_010167.1\|WP_004688847.1\|171860_173369_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
NC_010167.1\|WP_002966383.1\|183313_184303_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NC_010167.1\|WP_002966391.1\|176796_177198_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_010167.1\|WP_006073331.1\|191726_192290_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NC_010167.1\|WP_002966398.1\|169383_170118_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|224294
NC_010167.1\|WP_005971898.1\|173377_174508_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413
NC_010167.1\|WP_006073328.1\|190000_191746_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NC_010167.1\|WP_006073313.1\|171132_171750_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NC_010167.1\|WP_002966386.1\|181580_181877_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988

Protein	Function_ID	Function_description	E-value
NC_010167.1\|WP_002966393.1\|174504_175200_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	1.16784e-135
NC_010167.1\|WP_006073322.1\|182377_183226_+\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.96029e-90
NC_010167.1\|WP_006199006.1\|177300_178692_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NC_010167.1\|WP_004692532.1\|168280_169108_-\|aldo/keto-reductase	gnl\|CDD\|381357	cd19131, AKR_AKR5C2, Escherichia coli 2,5-diketo-D-gluconic acid reductase A (DkgA/YqhE) and similar proteins. Escherichia coli DkgA/YqhE is a founding member of aldo-keto reductase family 5 member C2 (AKR5C2). DkgA/YqhE (EC 1.1.1.274), also called 2,5-DKG reductase A, or 2,5-DKGR A, or 25DKGR-A, or AKR5C, catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG). It is also capable of stereoselective -keto ester reductions on ethyl acetoacetate and other 2-substituted derivatives.	8.73712e-178
NC_010167.1\|WP_006073323.1\|184646_187565_+\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
NC_010167.1\|WP_006073325.1\|189386_189860_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	4.41506e-65
NC_010167.1\|WP_006073324.1\|188772_189333_+\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	2.65864e-52
NC_010167.1\|WP_006018995.1\|192375_193920_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	4.24585e-118
NC_010167.1\|WP_002967189.1\|170357_171014_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	3.88001e-109
NC_010167.1\|WP_004688847.1\|171860_173369_+\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	5.61254e-159
NC_010167.1\|WP_002966383.1\|183313_184303_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.77791e-157
NC_010167.1\|WP_002966391.1\|176796_177198_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.4232e-20
NC_010167.1\|WP_006073331.1\|191726_192290_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.26747e-78
NC_010167.1\|WP_002966398.1\|169383_170118_-\|L,D-transpeptidase	gnl\|CDD\|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	1.69228e-59
NC_010167.1\|WP_005971898.1\|173377_174508_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	1.01993e-156
NC_010167.1\|WP_006073328.1\|190000_191746_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	4.93605e-81
NC_010167.1\|WP_006073313.1\|171132_171750_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	7.89221e-46
NC_010167.1\|WP_002966386.1\|181580_181877_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.80408e-54

>NC_010167.1|WP_006015192.1|178842_179097_-|hypothetical-protein
MRKELPIETAPKDGRKITVIWIDDDDQRNESIAQYRTLEQLRAGGGQWDEADTGWWTFTDSKTQRKIEPTAWIRETDDDESQED
>NC_010167.1|WP_006199006.1|177300_178692_-|class-II-fumarate-hydratase
MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIAMAVETVNRLYPALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPVGFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ
>NC_010167.1|WP_002966391.1|176796_177198_-|DoxX-family-protein
MSSITPKANGAATLIIRVFLSVLFIIAGYNKLTALDGTADYFASIGLPMPIVTAVVVGLIEFVGGLAILFGFKTRIAAVIVGLFTLGATLVAHMDFAEGMNLLIAQKNLAIAGGLFLLFLHGAGSLSIDARRG
>NC_010167.1|WP_002966393.1|174504_175200_+|ATP-phosphoribosyltransferase
MSVTLALPSKGRLKEKTLAVLEKAGYKVVLPDDDRNYRARVEGEDDLDILFLSASEIARELGYGSVDLGVTGEDLVRETLAHADERVAIEAQLGFGHADVVVAVPEVWRDVTTMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLRANRLKVLEDGIILRSQACLVSARRSHTSRRVEEIAARIRAGLEI
>NC_010167.1|WP_005971898.1|173377_174508_+|ATP-phosphoribosyltransferase-regulatory-subunit
MVGSRTSPIFNALRVELNAREAELVEIPLIQPADPFLDMAGEDLRRRIFLTENENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQRRDGAAEFLQAGIEDLGAADEAASDARSLADALSCVKAIAPDAPLEIVLGDQSVFAGMLKALGLPQGWRKKLLRSFGDAHSMDLALAELTGTQRRDPLPESLAVLVAEGDEIGLARMLEAEMLEAGISPGAGRTPVEIARRLIEKEDLAATHFPAAALDLLRQFLAIRVSLDTAAVTLRAFAADNALDLGAVLQKFEARADAIAQAGIEMKDIIYDASFGRPLDYYTGLVYEIRDASNRQDGVLAGGGRYDRLLTMLGACEAIPGVGFSIWLDRLQALAGEKQ
>NC_010167.1|WP_004688847.1|171860_173369_+|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYDLYGFEPVETPLVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARYVAENFETLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADTLERLGIQRGDYAIRVNNRKVLDGVLDAIGLEGEGNAAKRLNVLRAIDKLDKFGPEGVRLLLGKGRLDESGDFTKGAQLPEAAIEKVLAFTAAGGADGAQTIANLQAVVAGNAKGEEGVQELADMQALFFAGGYEGRVKIDPSVVRGLEYYTGPVFEAELLFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLMTALKNLGKLDVSDTVGPVVVLVMDKDTQNLGRYQKMVSDLRKAGIRAEMYVGGSGMKAQMKYADRRAAPCVVIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWRESRPAQITVREDGLVDAVREILDAQARDRAEQSK
>NC_010167.1|WP_006073313.1|171132_171750_+|LysE-family-translocator
MDLMSLVAFAGILVVAAGTPGPNVGALVARVISRGHKGVFPFMFGLWLGDAVWLSLAVWGLSALAHTFQTAFLVLKYAGVAYLIYLSWKMWFAPVDEEADENTIPRQGEGKRLFLSALGVTLGNPKIMVFYLAILPTVVDITHISLTGWVELLLVMFMVLAAVDTAWVVLAAQARKFLRSPRMMRLANRTSAGMMAGAAVAIAAH
>NC_010167.1|WP_002967189.1|170357_171014_+|DNA-3-methyladenine-glycosylase-I
MSDMAEARAGLVVGADGRTRCFWPGELPDYLAYHDNEWGVPVADDFRLFEKICLEGFQSGLSWLTILRKRENFRAAFDGFNFHRIATYDESDVERLLADKGIVRHRGKIVSVINNAGRAIELIEEKGSLAAYFWSFEPGAENRPAVVDYPTLVANPITATSTRISKDLKKRGWSFVGPTTVYAFMQAMGLVNDHIEGCHCRATIEKLRQNFKRPGKKL
>NC_010167.1|WP_002966398.1|169383_170118_-|L,D-transpeptidase
MKPRHLLLIGSLTAIAVSIVSTGMAFADDRYSDLPPVRVSQAISAPWVAQLQDAPARPRIARQETRKTKTHYNKVSYQRPATNPATTARKKQFDPIYLPQIVSYSGKEKPGTIVIDTASRFLYLVQADGKARRYGVGVGKQGFSWKGTQRISRKAEWPTWTPPSEMIARERKKGRFLPARMDGGINNPLGARALYLGSTLYRIHGTNQPWTIGKAMSSGCIRMRNEDVTDLYERTPVGTRVVVR
>NC_010167.1|WP_004692532.1|168280_169108_-|aldo/keto-reductase
MTVPTVKLNDGNHIPQLGYGVWQISNDEAVSAVSEALKAGYRHIDTATIYGNEKGVGKAINGSGIARADIFLTTKLWNSDQGYESTLKAFDTSLKKLGTDYVDLYLIHWPMPSKDLFMETWRAFIKLKEEGRVKSIGVSNFRTADLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHDIATEAWSPLGQGKLLEDPTLKSIAEKHAKSVAQIILRWHIETGNIVIPKSITPARIKENFDIFDFTLNGTDHDAITKLDMADGRIGPNPSVFSA
>NC_010167.1|WP_002966386.1|181580_181877_-|co-chaperone-GroES
MADIKFRPLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>NC_010167.1|WP_006073322.1|182377_183226_+|TIGR01459-family-HAD-type-hydrolase
MILPERLDDLTDRYDAIFCDVWGVVHNGETSFAPAIAALQRARAKGVTIILVTNSPRPHPGVVAQMSLLGVPENAYDRVVTSGDVTRDLIAEGPRRIFHIGCERELAIYDGLDVELVEEFEAAGVVCTGLYDDEVETPEDYRELLQRLRSRNLPFICANPDIMVERGPRLIWCAGALAREYGQLGGRTLIAGKPHRPIYEAALRAVESIRGGSVDKSRILGIGDGVLTDVKGAADFGLDVLYISGGVHAADYAVNGDLDMAKMEAFLEKHGHRPIASLHALV
>NC_010167.1|WP_002966383.1|183313_184303_+|bifunctional-riboflavin-kinase/FAD-synthetase
MKKSSFQRLTGTEGLPPALHDCVVAIGNFDGVHRGHQAVLERALELAERESRPAVVLTFEPHPRSFFKQDQPVDRLTDAAEKAEILRLMGFDAVMEQPFTAEFSQRSAEDFVQHILVEKLRASRVVTGYDFHFGKGRRGTPEFLCEAGKKAGFSVTLVDAFTDEGGMLVSSTRIRNLLSEGEVAEAAGLLGYRYRICGEVIHGKKLGRTLGFPTANMALAPQTSLKHGIYAVRFRLDDAMLYDGVASFGRRPTVDDEGAPLLETFLFDFSGDLYGKTAAVSFFGFLRGEVKFDGLDPLIDQMKQDEAQARALLADVRPISGLDRMLSFN
>NC_010167.1|WP_006073323.1|184646_187565_+|isoleucine--tRNA-ligase
MTDTTKIDYSKTLYLPQTEFPIRAGLPQREPLFVQRWEEMNLYKKLREQAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYNSNYVPGWDCHGLPIEWKIEEKYRAAGKNKDEVPINEFRKECREFASNWIKVQTEEFKRLAILGDFENPYTTMNFHAEARIAGELLKFAASGQLYRGSKPVMWSVVERTALAEAEVEYHDIESDMIWVKFPVAGEVTTENDLSGSAVVIWTTTPWTIPGNRAVSYSSRIEYGLFEITEAENDFGPRPGERLVFADKLVEECCAKAKLQFKRLRSVSAEELGKIVLDHPLKGFGGGYEFVVPMLDGDHVTDDAGTGFVHTAPSHGREDFEAWMDNARQLEARGIDPNIPFPVGDDGFYTKDAPGFGPDREGGPARVIDDNGKKGDANKVVIEQLIAADKLFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKNLGDGTTLRSRALKAIDETRFVPAAGQTRLRSMIEGRPDWVLSRQRAWGVPICVFVDEEGNILQDDAVNKRIMDAFEKEGADAWFADGARERFLGARAGEGWTQVRDILDVWFDSGSTHTFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYNAVVTHGFTMDEHGKKMSKSLGNTVTPQDVIKESGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDEGENVAYADLPELERLMLHRLTELDELVRSGYDTFDFKRIARALVDFMNVELSAFYFDIRKDALYCDAPSSIRRKAALQTVREIFVRLTTWLAPMLPFTMEEAWLDRYPQSVSIHAEQFRPTPAEWRDDVLAEKWRKVRAVRRVVTGALELERADKRIGSSLEAAPVVYIADKSLSDSLEGLDFAEICITSGISVSDAAAPEGAFTLGDVKGVAVVPERAKGEKCARSWRYTTDVGADPEFPEVSARDAAALRELQALGKL
>NC_010167.1|WP_002971287.1|187756_188428_+|hypothetical-protein
MKIEGRVLVLMTALAGLSLSGCVSSPTYGTDKSAGAQLLDDVSNMASFGQGKKKERIDYKPRPDLVRPAPGDKGYLPAPQQSLASSSDPNWPESPEQRRKRVRDEITAHRDDPNYVSPVLQDAPVADNIRTALPRGNSRREDYASRTPTSDPAKVAALKAARAQQNQGSATTRRYLSEPPLAYRQPASTAAVGELGPDEAQKERERKKAASGSRGWRDYLPWN
>NC_010167.1|WP_006073324.1|188772_189333_+|cytochrome-b
MSSKTYIWDDRSGYGLVSRGFHWLMALLFLWQFASAILRVFAKDTPIYSFFWSAHFQLGFALLVRALLRGVWGLMNIHRRPHKDGAIGKLAVLGHLAIYVLMITIPSLALLRAYGSGRGFSFLGMPIFAKTDIQNAMLTAPANALHGPLGWVLLAAIVGHVAMALVHHFALRDDTLRYMTGHGTPN
>NC_010167.1|WP_006073325.1|189386_189860_-|nucleoside-deaminase
MRKAASITKANSATPMDIALEEAHAAGERGEVPIGAIIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEMLGSERLIDCDLYVTLEPCAMCAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQPTCHHTPEIYPGFCEADARKILKDFFREKR
>NC_010167.1|WP_006073328.1|190000_191746_+|pseudouridine-synthase
MMAQGDAVTLLKGLYQMTTEDDNKGGKPPHGRKGHSDRPGRPDRDSRPRREGGDRDKPRKFGSRGAPVEEETSERIAKRLARAGIASRREAETMIAAGRIAVNGKVLESPAVNVKRTDIITVDGKPLRQTERTRLWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGHLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQDANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLGDKLIEESGADFDAPVLNEFSNAAVQGRTRREMEEGELPQEGERRRAPREREWISSTGERRRGREEKTEKVEPRRRGNANVWMAPGARPKGEKEAAKPARVEHQQPHRSAKFSGDLQMRPRRFSEEERGGEESGERRYKRPEGRFEREGGRPDNREKYEKHEGAGKERRPGKRERAELRNAEGQTTERGKGGFEGRKPGKPGGPRSEGRFGGADRDTRSGPRGSGPRGAGDGPRRGHDGKPGGKPGGKPTGRPGGKPGTKPGGGGRSGGGGADRRR
>NC_010167.1|WP_006073331.1|191726_192290_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNILAHSFPDKVEGVRVLDLFAGTGALGLEALSRGARYATFVEESAEGRGILRQNIEALGLQGHTKILRRDACQLGIVGTMEPFDLVFADPPYGRRMGEKAFLSALQGGWLNPDALLVLEEDAQAALELDDRFAVREERNYGGTVIRLIELKAAT
>NC_010167.1|WP_006018995.1|192375_193920_+|insulinase-family-protein
MNNPSLRRLLLSTVLGFALALPLAGGAVRAEMQPAAPAETQPAPAAPAAPVAQAALPEISRLDGVSNFTLPNGMQVVVIPDHRAPVVTQMVWYHVGAADEAPGVSGIAHFLEHLMFKGTKNHPAGEFSARIASIGGQENAFTSYDYTAYFQRVSPEALEMVMDFESDRMENLVLDEEAVKTEREVILEERRMRIDSNPGAMLMENTDAVLFYNHPYRKPVIGWQQEMEKLSLKNAIDFYNQYYTPNNATLVIAGDVTPERVRELAMKTWANVHKRAEVLLRERPQEPAKHAARVVTLHDERVSTPSFRISWLVPSYANEKRFANVKPGDAPALDLLSEILGGSQLSRLYQQLIVKQGIAAETGASYDGDALDDGTFSVYGVPRNGASLGDVEKAVAAQVDRIIRDGVTQAELDQARNRFLKAVIFARDSQTGMARIYGSALSVGQTVDDIQKWPDLIKSVTVDQIKDVARRYLVKDQAVTSYLLPPDTEAESARKKPNAPANDASASGAGGAIQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NC_010169_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010169_1

1356022-1356159

Orphan

Consensus_repeat	Method
ATCGAACTAATCAGTTGCGGGCTTTATCGACCAGTTTGTTCTTTTCGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010169_1

>merge|NC_010169|1|1356022-1356159|CRISPRCasFinder
ATCGAACTAATCAGTTGCGGGCTTTATCGACCAGTTTGTTCTTTTCGATCACCCGTCCGGCAACGCCGGACAAGAAAAAGAAAAGTGGATCGAACTAATTAGTTGCGGGCTTTATCGACCAGTTTGTTCTTTTCGATC

>NC_010169|1|1|1356022-1356159|CRISPRCasFinder
ATCGAACTAATCAGTTGCGGGCTTTATCGACCAGTTTGTTCTTTTCGATC	ACCCGTCCGGCAACGCCGGACAAGAAAAAGAAAAGTGG
ATCGAACTAATTAGTTGCGGGCTTTATCGACCAGTTTGTTCTTTTCGATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010169.1\|WP_006071101.1\|1366727_1367627_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NC_010169.1\|WP_006071082.1\|1351865_1352597_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
NC_010169.1\|WP_006071074.1\|1346867_1347587_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NC_010169.1\|WP_004688528.1\|1349090_1350116_+\|hypothetical-protein	unknown	unknown	unknown
NC_010169.1\|WP_006071077.1\|1347607_1348420_-\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|179312
NC_010169.1\|WP_006071094.1\|1358046_1360002_-\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NC_010169.1\|WP_006071099.1\|1361810_1362932_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223581
NC_010169.1\|WP_002964498.1\|1363115_1363688_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NC_010169.1\|WP_006071079.1\|1348432_1348822_-\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|223317
NC_010169.1\|WP_006071090.1\|1353910_1354318_+\|BA14K-family-protein	unknown	unknown	gnl\|CDD\|369573
NC_010169.1\|WP_004688534.1\|1365777_1366710_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	unknown	unknown	gnl\|CDD\|234626
NC_010169.1\|WP_006642931.1\|1355728_1355953_-\|hypothetical-protein	unknown	unknown	unknown
NC_010169.1\|WP_002964492.1\|1357194_1357836_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_010169.1\|WP_004686378.1\|1361408_1361810_+\|STAS/SEC14-domain-containing-protein	unknown	unknown	gnl\|CDD\|378774
NC_010169.1\|WP_002969568.1\|1350248_1350683_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|225998
NC_010169.1\|WP_004690970.1\|1354363_1355596_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_010169.1\|WP_006071104.1\|1367667_1368849_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224992
NC_010169.1\|WP_006071081.1\|1350834_1351761_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NC_010169.1\|WP_004690972.1\|1360371_1361112_-\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|223923
NC_010169.1\|WP_002964499.1\|1363706_1365530_-\|acetolactate-synthase-3-large-subunit	unknown	unknown	gnl\|CDD\|236380

Protein	Function_ID	Function_description	E-value
NC_010169.1\|WP_006071101.1\|1366727_1367627_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.51569e-87
NC_010169.1\|WP_006071082.1\|1351865_1352597_-\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	2.83198e-05
NC_010169.1\|WP_006071077.1\|1347607_1348420_-\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|179312	PRK01636, ccrB, fluoride efflux transporter CrcB.	8.21343e-53
NC_010169.1\|WP_006071094.1\|1358046_1360002_-\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NC_010169.1\|WP_006071099.1\|1361810_1362932_-\|AAA-family-ATPase	gnl\|CDD\|223581	COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair].	1.80979e-69
NC_010169.1\|WP_002964498.1\|1363115_1363688_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	1.96537e-87
NC_010169.1\|WP_006071079.1\|1348432_1348822_-\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	4.79283e-32
NC_010169.1\|WP_006071090.1\|1353910_1354318_+\|BA14K-family-protein	gnl\|CDD\|369573	pfam07886, BA14K, BA14K-like protein. The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus and by Brucella suis. BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process.	2.35112e-12
NC_010169.1\|WP_004688534.1\|1365777_1366710_-\|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.23914e-131
NC_010169.1\|WP_006071074.1\|1346867_1347587_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	7.75051e-76
NC_010169.1\|WP_002964492.1\|1357194_1357836_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.94015e-09
NC_010169.1\|WP_004686378.1\|1361408_1361810_+\|STAS/SEC14-domain-containing-protein	gnl\|CDD\|378774	pfam11964, SpoIIAA-like, SpoIIAA-like. These proteins adopt an alpha/beta SpoIIAA-like fold, similar to that found in STAT (pfam01740). They adopt open and closed conformations arising from different arrangements of their alpha-2 and alpha-3 helices. They may be membrane associated and may function as carriers of non-polar compounds.	6.21408e-19
NC_010169.1\|WP_002969568.1\|1350248_1350683_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|225998	COG3467, COG3467, Predicted flavin-nucleotide-binding protein [General function prediction only].	7.65476e-38
NC_010169.1\|WP_004690970.1\|1354363_1355596_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	8.07132e-135
NC_010169.1\|WP_006071104.1\|1367667_1368849_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224992	COG2081, COG2081, Predicted flavoproteins [General function prediction only].	0
NC_010169.1\|WP_006071081.1\|1350834_1351761_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.09472e-107
NC_010169.1\|WP_004690972.1\|1360371_1361112_-\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|223923	COG0854, PdxJ, Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism].	4.58967e-120
NC_010169.1\|WP_002964499.1\|1363706_1365530_-\|acetolactate-synthase-3-large-subunit	gnl\|CDD\|236380	PRK09107, PRK09107, acetolactate synthase 3 catalytic subunit; Validated.	0

>NC_010169.1|WP_006642931.1|1355728_1355953_-|hypothetical-protein
MFRLQGLMKQEADPMVGFQLNRKEGALLASPFILGVLCWVWSPIYSEQKEPKFYVMFFVSCASGTKTIANIFIP
>NC_010169.1|WP_004690970.1|1354363_1355596_-|PLP-dependent-aminotransferase-family-protein
MLDWENVFATRSKRMRASEIRELLKLLERPDIISFAGGIPDPALFPHDEFQAAYKDILGGPEANAALQYSISEGYKPLRTWLVGELAKIGIPCTEDNVFITSGSQQALDYLGKLFLSPGDTALVTAPTYLGALQAFNAYEPNYDTLALKGNRTPQSYAQTAQKAGGQVKFAYLSADFSNPTGETVDRAGREKLLAHADELDIPVIEDAAYQYLRYNGDAIPPILALDIARNGGDIEKTRTIYCGSFSKTLAPGLRVGYVVASKTVIRKLVLMKQAADLHSSTINQIAIQHVAVHGFDAQVAKLHGVYKHRRDRMLEALAKYMPEGVHWTKPEGGMFVWVTLPEGMDGASLLAVSIDSEKVAFVPGKAFFADGTGANTLRLSYSCANDEMIDEGIKRLGRLIRAHTKSAAA
>NC_010169.1|WP_006071090.1|1353910_1354318_+|BA14K-family-protein
MRLATITSLLAISLTGASLAVELRNTPYLPSLKPSTPPILGSNNSLNRPAPGTSRCYGSTICRDSGNYISGNGILIYKNGEPLEVHPSMRPPIQGAMPSSNHIQWCSNHYRSYRSSDDTYQPFAGPRQSCNSPFQ
>NC_010169.1|WP_006071082.1|1351865_1352597_-|NUDIX-hydrolase
MEQVEENRVHVISRADVRVLPGPLPYAEGNRASIAENWARECAANPTLFDGEVYLAPEATLKDGVLQAGFKRTRFATLMHWRRDPSPIRPWHIFSVGVIVSGEGHLIAVRMGQQNVVAGKVYFPAGSIDDNDIFDARVDYDANCRREVREETGIDLADARAETQINLVTGNRSIALFRRYYFHVPSCDLVARIEGYLSREAAPELAEIIPDKAAGMMNEATPSYVRAFADWYFGNPGLAGTDR
>NC_010169.1|WP_006071081.1|1350834_1351761_-|PhzF-family-phenazine-biosynthesis-protein
MKKAAVSGRLYEVFDVFADKALAGNPLAIVHDCEGLTDACMQAIAREFNLSETVFIHAPANPAHEASVRIFTPAYELPFAGHPTLGAAVSLARRQKTGDETDRLVTLEEKVGIVRCGVILGENSAFAEFDLPRLPEQVDVKIEREEAAAAIGLGTHEIGFENHVPGVWSAGTPCLLVPVHNLIAAAKVSIDPVYVSESLPHVGGRPLPIYVYCRETILFDSHFHARMFVIGANVYEDPATGSAVAAFAGMIQQNDKPVDGSSQWWIEQGMEMGRPSRIRLELDVSKQKLVSARIGGTAVKIAEGRLFV
>NC_010169.1|WP_002969568.1|1350248_1350683_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MLITEMSDYDIREMIQHKHVGRLGYVVDDRPIIVPMTFRFSGGSFYSFTTDGQKTNAMRKNDAICILFDQIESQTKWRTVLVQGRYREIAREDEEEAIVRIMANEPTWWEPAYTKTITKEGTARALKPVFFRVDIEKLSGHQAE
>NC_010169.1|WP_004688528.1|1349090_1350116_+|hypothetical-protein
MDTLLHLIAILIGIFGLLVYFRSVIRVMLLNWRERDLISYFAAVAAVVLIRRFTDSGAGYERIQRSQAWVFPVFVILSVAFWFLLVQLCFTLILWGTRAETSFIYSFTASGSALSTLGFKTPSSWLGEFLAIVEGAMGLAIVVLLFSFVPGYLAAVQARERKVGWLYDRTEGHPTYQTVLEGMNTSEQDINDTGIWEDWEAWFRGIYETHTTAPILTFVPSIYHGANWLRTSASILDTASLLMSVLDEKKTYAAHMCRDIGARTIQLLAKELHITAPSLGRAIPHSPDLPANTFDLVYDQLVANGVPVNPDKEKCRETFTQLRAEYAADLNQISRITSMPL
>NC_010169.1|WP_006071079.1|1348432_1348822_-|fluoride-efflux-transporter-CrcB
MTPLDVMWVGLGGGVGSLGRWWIGRIVGEYHHGAFPLGTFLINISGAFVIGYLSVLFGVDRHDRYGTMLNAGVLTGILGGYTTFSSMQLDAVKLSHKGQGGLAVFYLVASVLSGLFAAWLGAMLAHLQG
>NC_010169.1|WP_006071077.1|1347607_1348420_-|fluoride-efflux-transporter-CrcB
MLDIIILVVIGGAFGAMTREFIMLMVPPLTDGFPLDILVANVVACFLLGTVTALYARKIHSRDVHTIIGMGMMGGVSTFSSFAYGSVVLASASMSAFLIAAAYVTVSVVAGYVAVLAGMKFGEKSADILHRYPPMASIIDSGLVTVESRHSVAETIERVAAKAKSMGMNVFTRVDHGAGAKEAGLGLPPTELIIFGNPQNGTVLMQDKRTIGLDLPIRAVAWEDGSGKVWLTVNDPAWLAQRHSLGLSSDVAIKAMVTGTGTVTKYAAGD
>NC_010169.1|WP_006071074.1|1346867_1347587_+|ABC-transporter-ATP-binding-protein
MKPLLSLDRVSVSRDGRNVLDKLSLSLAAGERLALIGDNGVGKTTLLRTIVGLEPASGEITAFGINCRNESDFRKIRAKAAYLFQDPDDQLFCPTVIDDVAFGPLNLGLSRQEAMELSNGLLHDLGLGHLAGRITHHLSGGEKRLVSLAAVLAMQPQVLLLDEPTNALDEKHLERMLAILSAQKIAMIIVSHDWEILERLTDRAVVLRNGKLLPAMLHRRSQWSEQVHLHYVEAEGSAL
>NC_010169.1|WP_002964492.1|1357194_1357836_-|TetR/AcrR-family-transcriptional-regulator
MTDTGDELQAHKQQVLSPRQNDVLEQALRLLVEGGDRALTTASIARAANCSKESLYKWFGDRDGLLTAMVRWQASKVRVVPLAREKLDAESLFSSLEHFARDWLLVLSGRTSIALNRLAVSHAASGRSALGEIVLSNGPVAMAERLKPILTMGKEAGLLIFDDIDEAFRTFFGLVVRDMQIRLLLGDRLKLTDEVVIRDARRATKRFFALYGA
>NC_010169.1|WP_006071094.1|1358046_1360002_-|potassium-transporter-Kup
MSGELNGNDTSAQAAVSAGSVLEGAAFADEGEQHNESMKTLVLGALGVVYGDIGTSPIYAFREALHAAATNGILARSDILGVVSLIFWALTLVVTVKYVLFVLRADNNGEGGILSLMALVRAALKGRPDLILGVGICGAALFFGDAVITPAISVLSAMEGLEIVAPNLTPFVVPATVVILVTLFSVQKLGTGRVAIVFGPIMALWFVALGASGLWHIFDDPTVMAALNPYYAVRFLTVSPAVAFVTVGAVFLAMTGAEALYADLGHFGRKPIVRAWLWIVFPCLLLNYFGQAAFILSHGEAAALPFFQMIPSFALWPMVLLATAATVIASQAVITGAYSVARQAVQLNILPRLEIQHTSEKLHGQIYIPRVNLLLGLAVVILVLGFEKSSNLAAAYGIAVTGNMLVTTVLLYIVMTRIWNWRVSRALPIILGFLVIDMLFFSANIIKVHEGGWASIGIATVLVLIMWTWVRGTRHLFQKTRKAEVPLDLIVEQMAKRPPTIVPGTAVFLTGDPKSAPTALMHSLKHYKVLHENNVILTVVTASKPWVASADRARLSQYNERFMLVTLTFGYMQQPNILRALGLCRRLGWKFDIMTTSFFLSRRSLKASVHSGMPLWQDKLFILLARTASDATEYFQIPTGRVVEIGTQVNI
>NC_010169.1|WP_004690972.1|1360371_1361112_-|pyridoxine-5'-phosphate-synthase
MPAKLSVNLNAIAMLRNRRDLPWPSVTGLGRAALAAGAAGLTVHPRPDQRHIRFSDLGDIRALIDDEYPQAEFNIEGFPSEAFLDLVEKHEPEQVTLVPDDPMQATSDHGWDFMSKADFLAPIVARLKGRGMRVSLFADPDSLGYERAKAIGADHVELYTGPYGATHDDPAAAARELDRLEKAARAATALGLAVNAGHDLTVDNLPALVKRIPQLAEVSIGHGLTADALMYGIPVTVSRYITALAG
>NC_010169.1|WP_004686378.1|1361408_1361810_+|STAS/SEC14-domain-containing-protein
MMRNESIPVIRRIPTSRDDVFAFAIEGHLDDASLENLYGLLDAAYETHEKIDLLIRLTGYEGVDWVSAFSESMLSIRSKSLKHLRRYAIIGGPLWIQASITLVQPFLSIEVRAFDPDEEQDAWEWLDAKPVEE
>NC_010169.1|WP_006071099.1|1361810_1362932_-|AAA-family-ATPase
MQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAEHVDGEVQFAAFTGKAAQVLRSKGASNARTLHSLIYRPRGEEAIEDETTGKTSIAPTFSLNRQSPVAKAAMIMVDECSMVDEALGRDLMSFGTPILVLGDPGQLPPISGGGFFTEHEPDYLLTEIHRQARDNPIIRMALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRTRRRYNQRLRELKGFTADYPQAGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLVSPEDEDRGVAKIKLLKAQFEDPDTEIPWQTKKRFDDFDYGYALTVHKAQGSQWDQVVLFDESFAFRDTRERWLYTAITRAAERLIIVK
>NC_010169.1|WP_002964498.1|1363115_1363688_-|acetolactate-synthase-small-subunit
MNAQNLASGSAYFIAAETQTPETHTLAVLVDNEPGVLARVIGLFSGRGYNIESLTVSETEHERHLSRITIVTRGTPHVLDQIRHQLARIVPVHRVVDLSHRAATLGHERPIERELALVKVAGKGEARAETLRLADAFKAKVVDATTDHFILEITGKSAKIDQFISIMKPLGLVEICRTGVAAMNRGAEGM
>NC_010169.1|WP_002964499.1|1363706_1365530_-|acetolactate-synthase-3-large-subunit
MNAGKHEAEANAGQAQDAGHPREMTGAEMVIQALIDQGVESIFGYPGGAVLPIYDELFQQDQIQHVLVRHEQGAGHAAEGYARSTGKVGVMLVTSGPGATNAVTPLQDALMDSIPLVCISGQVPTTLIGSDAFQECDTIGITRPCTKHNWLVKDVNDLSRVLHEAFHVASTGRPGPVVVDIPKDIQFAKGIYTPPETAPRTSYRPVLDGNAEAISEAVRLLANARKPVIYSGGGVINSGPAASRLLRELVEISNFPITSTLMGLGAYPASGKNWLGMLGMHGTYEANMTMHDCDVMLCVGARFDDRITGRLNAFSPNSKKIHIDIDPSSINKNVRVDVPIIGDVAHVLEDIVRQFRAFDRKPDRQALTEWWGQIDRWRARNSLAYTPNKDVIMPQYAIERLYELTRNRNTYITTEVGQHQMWAAQFFGFEQPNRWLTSGGLGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCIQEMSAAIQHNAPIKIFILNNQYMGMVRQWQQLLHGNRLSHSYTEAMPDFVKLAEAYGAHGIRCEKPGDLDAAIQEMIDIDKPVIFDCRVANLANCFPMIPSGKAHNEMLLPDEATDEAVANAIDAKGRALV
>NC_010169.1|WP_004688534.1|1365777_1366710_-|tRNA-(adenosine(37)-N6)-dimethylallyltransferase-MiaA
MSEDAVKNAILIAGPTASGKSALAIRMAKATGGFIVNTDSMQVYGVLDLLTARPSRADLAEAEHFLYGHVPPSSTYSTGKWFEDVEALLGRCELQGRVPIFVGGTGLYFRALLGGLSQMPEVSAQVRDHWRGRMEAEGAKALHAVLCVRDPAIAAALQPSDSQRIVRALEVLESTGKSLLEWQKVKGRALVDDQSAQKIVLRPDRAWLGERIARRFSAMWAEGAIDEVRALLALDLDPALPAMKAIGVREVSAFLAETMSREEAIERSVIATRQYAKRQSTWFRNQLGEDWRVYASGEEVFQGGSFRDPQ
>NC_010169.1|WP_006071101.1|1366727_1367627_+|phosphoserine-phosphatase-SerB
MSQQVSLVATLIANPAKAALAPSLGIKASAAVNATGLYWLADDIACDIPLPLGMEASEADASLRATLDGAPIDVVVQEQERRRKKILIADMDSTMIGQECIDELAEEAGLRDHVAAITARAMNGEIAFEPALRKRVALLKGLPLSVIDKVISTRITLTPGGPQLVRTMRKHGAYTALVSGGFTSFTRRIAEMIGFNEERANRLIDDGTRLTGTVAEPILGREAKVEKLVEIAERLGLTPEDAIAVGDGANDLSMIQLAGTGVALHAKPAVAAQAKMRIDHGDLTALLYIQGYRKADFVQ
>NC_010169.1|WP_006071104.1|1367667_1368849_-|NAD(P)/FAD-dependent-oxidoreductase
METVDVVVIGAGAAGMMCAIEAGKRGRSVLVVDHARAAGEKIRISGGGRCNFTNLHASPKNYLSQNPHFCISALSRYTQRDFIALVERRGISYHEKTLGQLFCDGSAVQIIDMLLGEMKRHRVRLKLGCGVKAIEKTANGFSLQLADGLAVSCQSLVVACGGKSIPKMGATGFGYDIAGQFGLRVVETRPALVPLTFEPNMLERLKPLAGIAVDAVVACGKVTFSEAMLFTHRGISGPAILQISSYWREGDEIRITMLPGTDSFEALREQRRQNGKQALQTALALYLPRKLAQAIAEETGAGSHLADLSDKVFRRVEAAVNDWRIKPAGSEGYRTAEVTLGGVDTRDLDSRTMQARSVPGLFFIGEVVDVTGWLSGYNFQWAWSSGWVAGQAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

455505 : 465528

Erysipelothrix_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006072245.1\|455505_456753_+	class I SAM-dependent RNA methyltransferase	A0A2K5B251	Erysipelothrix_phage	1.8e-17	34.3
WP_004688041.1\|456912_457515_-	TIGR00730 family Rossman fold protein	A0A1V0S9E9	Catovirus	1.5e-09	29.7
WP_002963597.1\|457644_458010_+	hypothetical protein	NA	NA	NA	NA
WP_006072248.1\|458196_459411_+	LysM peptidoglycan-binding domain-containing protein	G3MBQ1	Bacillus_virus	1.4e-06	45.8
WP_002967449.1\|459613_461500_+	ABC transporter ATP-binding protein/permease	W8CYL7	Bacillus_phage	5.2e-40	25.4
WP_006642661.1\|461547_462303_+	phosphatidylserine decarboxylase	A0A1V0SDU9	Indivirus	5.3e-12	27.8
WP_002963601.1\|462307_463144_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_002966703.1\|463228_463969_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002967450.1\|464037_465528_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.2e-49	34.5

DBSCAN-SWA_2

872932 : 885952

uncultured_Mediterranean_phage(90.91%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006072606.1\|872932_873952_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	6.3e-16	36.4
WP_006072607.1\|874024_874876_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-31	33.5
WP_002964011.1\|874868_875594_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-43	45.7
WP_002964012.1\|875739_875958_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.5e-07	65.1
WP_004686803.1\|876068_876650_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_006072608.1\|876646_877471_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.7e-43	41.1
WP_004690784.1\|877547_878831_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.5e-104	47.0
WP_006072613.1\|878979_879747_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.0e-39	39.8
WP_004683704.1\|879743_880412_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.6e-14	38.5
WP_006072616.1\|880791_882090_+	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	1.0e-18	41.1
WP_002964020.1\|882138_883005_-	ATP-binding protein	NA	NA	NA	NA
WP_002964021.1\|883164_883506_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.1e-12	40.2
WP_012246956.1\|883624_885952_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.2e-51	43.5

DBSCAN-SWA_3

959247 : 967599

Brucella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006072696.1\|959247_959967_+	hypothetical protein	A0A076GD06	Sinorhizobium_phage	4.6e-05	46.8
WP_002964091.1\|959963_960194_+	hypothetical protein	NA	NA	NA	NA
WP_002964092.1\|960190_960466_+	hypothetical protein	NA	NA	NA	NA
WP_004683738.1\|960488_961076_+	hypothetical protein	NA	NA	NA	NA
WP_004683739.1\|961310_962021_+	porin family protein	O11861	Bartonella_henselae_phage	5.1e-41	36.8
WP_002964095.1\|962368_962539_-	DUF1508 domain-containing protein	A0A2P1N580	Mycobacterium_phage	3.1e-05	45.1
WP_002964097.1\|962886_963201_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	6.9e-06	43.4
WP_004688321.1\|963200_963446_-	hypothetical protein	NA	NA	NA	NA
WP_144313581.1\|964286_965043_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_006072701.1\|965044_965818_+	hypothetical protein	A0A141GEY5	Brucella_phage	1.6e-120	96.9
WP_006072703.1\|965952_967599_+	hypothetical protein	A0A141GEY6	Brucella_phage	3.7e-175	61.8

DBSCAN-SWA_4

971059 : 979583

Brucella_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004685627.1\|971059_971818_+	glycoside hydrolase family 108 protein	H2EI67	Brucella_phage	2.8e-45	44.4
WP_002967636.1\|972177_972438_+	hypothetical protein	NA	NA	NA	NA
WP_002964107.1\|972777_973125_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.2e-30	59.3
WP_006072710.1\|973495_974761_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	7.8e-16	52.4
WP_002964109.1\|974871_976062_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	8.9e-46	35.3
WP_006072714.1\|976143_976788_+	dTMP kinase	M1PSC7	Streptococcus_phage	1.6e-33	41.9
WP_002964111.1\|976784_977867_+	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	2.1e-14	26.8
WP_006072716.1\|978035_979583_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	2.8e-100	39.5

DBSCAN-SWA_5

1485511 : 1495473

Acidianus_filamentous_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006071196.1\|1485511_1488334_+	excinuclease ABC subunit UvrB	B2CRJ8	Acidianus_filamentous_virus	3.6e-05	37.8
WP_002964620.1\|1488465_1489269_+	lytic transglycosylase domain-containing protein	E5RV25	Ralstonia_phage	1.5e-12	42.1
WP_002964621.1\|1489763_1489979_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.6e-09	48.4
WP_002964622.1\|1490395_1490908_+	BA14K family protein	NA	NA	NA	NA
WP_004691021.1\|1490966_1491623_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	1.3e-17	31.9
WP_005967803.1\|1491836_1492118_-	hypothetical protein	NA	NA	NA	NA
WP_004684063.1\|1492292_1492589_+	hypothetical protein	NA	NA	NA	NA
WP_002964625.1\|1492639_1493179_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_002971389.1\|1493278_1493986_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.2e-36	36.1
WP_006071200.1\|1494129_1495473_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	9.8e-09	26.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010167

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_010169

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection