CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_010338	Caulobacter sp. K31, complete sequence	2 crisprs	csa3,cas3,DinG,DEDDh,WYL	2	4
NC_010335	Caulobacter sp. K31 plasmid pCAUL01, complete sequence	0 crisprs	DEDDh	0	0
NC_010333	Caulobacter sp. K31 plasmid pCAUL02, complete sequence	0 crisprs	PrimPol	0	3

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010338_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010338_1

1704138-1704566

Orphan

Consensus_repeat	Method
GAGATCAACATCGCCGGCTCGGGCG	CRISPRCasFinder
GCCGGCTCGGGCGACGTC	PILER-CR

4 spacers

The CRISPR arrays of NC_010338_1

>merge|NC_010338|1|1704138-1704566|CRISPRCasFinder,PILER-CR
GAGCTGTCCAATGCCGGCTGCGGCGATTGGACAGTGGCCAACGTCAAGGGCAAGCTCGATCTGAGCCAGGCCGGTTCGGGTGACACCAAGGCCGGCAGCGCCGGCTCGGCCGAGATCAACATCGCCGGCTCGGGCGACGTCAGCACCCAGGAGATCGGCGGCGACCTGGAGATCAACATCGCCGGCTCCGGCGGCGTCACCGCCGCCAGCGTCAATGGCAAGCTCGAGGCCAACATCGCCGGCTCGGGCGACGTCACCGTCTCCGGCGGTCATTCGCGGTCGGTCGAGGTCAGCGTCATGGGCTCGGGCGACGTCAATTTCGACGGCGTGGCCGACAATGTCGAAGTGTCGGTGGCCGGTTCGGGCGATGTCCGCGTGGCCAGGGCCACGGGGAATGTCCGCAAGTCGGTGGCCGGCTCGGGCGACGTG

>NC_010338|1|1|1704138-1704447|CRISPRCasFinder
GAGCTGTCCAATGCCGGCTGCGGCG	ATTGGACAGTGGCCAACGTCAAGGGCAAGCTCGATCTGAGCCAGGCCGGTTCGGGTGACACC
AAGGCCGGCAGCGCCGGCTCGGCCG	AGATCAACATCGCCGGCTCGGGCGACGTCAGCACCCAGGAGATCGGCGGCGACCTG
GAGATCAACATCGCCGGCTCCGGCG	GCGTCACCGCCGCCAGCGTCAATGGCAAGCTC
GAGGCCAACATCGCCGGCTCGGGCG	ACGTCACCGTCTCCGGCGGTCATTCGCGGTCGGTC
GAGGTCAGCGTCATGGGCTCGGGCG

>NC_010338|1|1|1704375-1704566|PILER-CR
GCCGGCTCGGGCGACGTC	ACCGTCTCCGGCGGTCATTCGCGGTCGGTCGAGGTCAGCGTC
ATGGGCTCGGGCGACGTC	AATTTCGACGGCGTGGCCGACAATGTCGAAGTGTCGGTG
GCCGGTTCGGGCGATGTC	CGCGTGGCCAGGGCCACGGGGAATGTCCGCAAGTCGGTG
GCCGGCTCGGGCGACGTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010338.1\|WP_012285657.1\|1693245_1693986_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|163429
NC_010338.1\|WP_004616952.1\|1706046_1706355_+\|30S-ribosomal-protein-S10	unknown	unknown	gnl\|CDD\|179076
NC_010338.1\|WP_012285667.1\|1707140_1707779_+\|50S-ribosomal-protein-L4	unknown	unknown	gnl\|CDD\|235404
NC_010338.1\|WP_007662755.1\|1707778_1708075_+\|50S-ribosomal-protein-L23	unknown	unknown	gnl\|CDD\|235586
NC_010338.1\|WP_012285670.1\|1709204_1709585_+\|50S-ribosomal-protein-L22	unknown	unknown	gnl\|CDD\|234793
NC_010338.1\|WP_012285659.1\|1695825_1696662_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|223640
NC_010338.1\|WP_012285668.1\|1708079_1708919_+\|50S-ribosomal-protein-L2	unknown	unknown	gnl\|CDD\|236488
NC_010338.1\|WP_012285665.1\|1704671_1705433_-\|outer-membrane-beta-barrel-protein	unknown	unknown	unknown
NC_010338.1\|WP_012285654.1\|1690404_1691391_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_010338.1\|WP_012285662.1\|1700376_1701192_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
NC_010338.1\|WP_012285672.1\|1710346_1710787_+\|50S-ribosomal-protein-L16	unknown	unknown	gnl\|CDD\|236411
NC_010338.1\|WP_012285669.1\|1708922_1709201_+\|30S-ribosomal-protein-S19	unknown	unknown	gnl\|CDD\|178985
NC_010338.1\|WP_012285661.1\|1698588_1700253_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
NC_010338.1\|WP_012285655.1\|1691509_1692736_+\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NC_010338.1\|WP_012285658.1\|1694027_1695737_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237057
NC_010338.1\|WP_012285666.1\|1706370_1707141_+\|50S-ribosomal-protein-L3	unknown	unknown	gnl\|CDD\|234564
NC_010338.1\|WP_012285660.1\|1697120_1698311_+\|elongation-factor-Tu	unknown	unknown	gnl\|CDD\|234596
NC_010338.1\|WP_012285671.1\|1709584_1710334_+\|30S-ribosomal-protein-S3	unknown	unknown	gnl\|CDD\|234722
NC_010338.1\|WP_041538921.1\|1692868_1693246_-\|DUF423-domain-containing-protein	unknown	unknown	gnl\|CDD\|225238
NC_010338.1\|WP_012285663.1\|1701191_1703483_+\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|273765

Protein	Function_ID	Function_description	E-value
NC_010338.1\|WP_012285660.1\|1697120_1698311_+\|elongation-factor-Tu	gnl\|CDD\|234596	PRK00049, PRK00049, elongation factor Tu; Reviewed.	0
NC_010338.1\|WP_012285668.1\|1708079_1708919_+\|50S-ribosomal-protein-L2	gnl\|CDD\|236488	PRK09374, rplB, 50S ribosomal protein L2; Validated.	0
NC_010338.1\|WP_012285667.1\|1707140_1707779_+\|50S-ribosomal-protein-L4	gnl\|CDD\|235404	PRK05319, rplD, 50S ribosomal protein L4; Provisional.	6.279e-101
NC_010338.1\|WP_007662755.1\|1707778_1708075_+\|50S-ribosomal-protein-L23	gnl\|CDD\|235586	PRK05738, rplW, 50S ribosomal protein L23; Reviewed.	3.47279e-45
NC_010338.1\|WP_012285659.1\|1695825_1696662_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	2.92329e-73
NC_010338.1\|WP_012285670.1\|1709204_1709585_+\|50S-ribosomal-protein-L22	gnl\|CDD\|234793	PRK00565, rplV, 50S ribosomal protein L22; Reviewed.	5.41657e-52
NC_010338.1\|WP_012285657.1\|1693245_1693986_-\|TerC-family-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	2.08997e-67
NC_010338.1\|WP_012285654.1\|1690404_1691391_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.91001e-33
NC_010338.1\|WP_012285662.1\|1700376_1701192_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	3.5195e-91
NC_010338.1\|WP_012285672.1\|1710346_1710787_+\|50S-ribosomal-protein-L16	gnl\|CDD\|236411	PRK09203, rplP, 50S ribosomal protein L16; Reviewed.	1.65587e-90
NC_010338.1\|WP_012285669.1\|1708922_1709201_+\|30S-ribosomal-protein-S19	gnl\|CDD\|178985	PRK00357, rpsS, 30S ribosomal protein S19; Reviewed.	1.92008e-60
NC_010338.1\|WP_012285661.1\|1698588_1700253_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	6.65414e-68
NC_010338.1\|WP_012285655.1\|1691509_1692736_+\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.58585e-102
NC_010338.1\|WP_012285658.1\|1694027_1695737_-\|hypothetical-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	1.75582e-08
NC_010338.1\|WP_012285666.1\|1706370_1707141_+\|50S-ribosomal-protein-L3	gnl\|CDD\|234564	PRK00001, rplC, 50S ribosomal protein L3; Validated.	7.76133e-121
NC_010338.1\|WP_004616952.1\|1706046_1706355_+\|30S-ribosomal-protein-S10	gnl\|CDD\|179076	PRK00596, rpsJ, 30S ribosomal protein S10; Reviewed.	1.41528e-68
NC_010338.1\|WP_012285671.1\|1709584_1710334_+\|30S-ribosomal-protein-S3	gnl\|CDD\|234722	PRK00310, rpsC, 30S ribosomal protein S3; Reviewed.	6.78329e-154
NC_010338.1\|WP_041538921.1\|1692868_1693246_-\|DUF423-domain-containing-protein	gnl\|CDD\|225238	COG2363, COG2363, Uncharacterized small membrane protein [Function unknown].	7.038e-22
NC_010338.1\|WP_012285663.1\|1701191_1703483_+\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|273765	TIGR01701, Hypothetical_protein_Rv2900c/MT2968/Mb2924c., oxidoreductase alpha (molybdopterin) subunit. This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.	0

>NC_010338.1|WP_012285663.1|1701191_1703483_+|FdhF/YdeP-family-oxidoreductase
MADRPNAGIPGIHRYDNAAGGWGALKAVAGALTGQETVIEGGKTLLRANQPEGFDCPGCAWPDPKHTSSFEFCENGAKAVAWEATTKRATPQVFAAHTVAELKTWSDHALEDLGRLTHPMAYDRASDRYLPISWDEAFTRTADALRALDHPNQAEFYASGRASNEAAFLFQLLGRRVGTNNFPDCSNMCHEPSSVGLPDSLGMGKGSVSLEDFDHADLILCFGHNPGTNHPRMMTTLRDASRRGATILAFNPLRERALEKFAAPQDPIEMATLSSTPIASAYYQLTVGGDALAVQGMMKAVLALDAESQGTVVDHAFIAEHTQGFEAVKAVVEALTWDEIEAGSGLSRVQIEEAARAYAGAKATILCYGMGLTQHRSSSSTVQQLVNLLLLKGNIGREGAGICPLRGHSNVQGDRTVGIWEKPSAAFLDAMDQVFAFKSPRAHGHTVVEAIAAMEAGEARVFIGLGGNFAVAAPDPVRTFAAMDKVGLHVHIATKLNRTHLLCGEENLLLPCLGRTEIDIQAGGRQAVTVEDSMSMVHASRGLNAPASDQLKSEPAIIAGIGAALFGPGDIVDWPGLAADYDKIRDLIEAVFPQAFANYNERIRTPGGFRLPLPHAERVWKTPSGKAQFLVHKSDGQDARRGDGEVLLLTTLRSHDQYNTTIYGQDDRYRGVFGRRDVVFAHADDIAARGLKAGDRIDLVAAFDETGRRAVRGFTLVERDIPRGCLAAYYPEANVLVALDDHDRRSGTPAYKSVPVRLAASAG
>NC_010338.1|WP_012285662.1|1700376_1701192_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MSNPAAQSRAATQWRAATGFRTIDRATPREVAVGLSFDGRPHTVLMATPADVEDLARGFTLTEAVARAEDIIAVEITETDLGILADVKLRPGAIQRKARPRTLEGRSSCGLCGVQRLADAVRPLPRVEGGAKISHPAVQRAIGALDEVQLLGRLTRATHAAAFADAEGRLVLVREDVGRHNALDKLAGAMARDGGDASEGFVLVTSRCSFEMVEKTVRMGGAILVAVSAPTDLAIRRAEESGLTLVALARADGHTVFACPERLLDAALEYA
>NC_010338.1|WP_012285661.1|1698588_1700253_-|FAD-dependent-oxidoreductase
MAIMDTRRDQMFPSLKAEEIDRIRRFGEIAHAKAGDALARSGEVSPGLMVLLNGAARVTRRDANNDSHVVVEHGPGNFIGELAQLSGRPSLVDVHALTDLAVLCIKPERLRAVLIAEAELGERIMRALILRRVGLLETGAGGPVIIGRTGDGVVIRLSGFLGRNGHPYQHLDPDKVDCAKVLIERFSIDEAELPIVLCPGGQILRHPSNAELARCIGMVGKLDPDQVFDVAVVGAGPAGLATAVYAASEGLSVLVLDTRAFGGQAGASARIENYLGFPTGVSGMALMARAYNQAQKFGANLAIPDEVAALDCEGDSKAGGLSGYLLKLTSGETTQAKTVVIASGARYRRLEVSNLDQFEGSSVHYWASPLEAKLCAGQEVALVGAGNSAGQAAVYLASQVAKVWLVIRGKSLDASMSRYLIDRIESLPNIEVVTRNEIVELEGEDGQLRAIRHRDLDTGEEDRCEISHLFLFIGAAPNTAWLAQCHVELDNHGFVRTGPDLTPGHPPLQTSRHGVFAIGDVRAGSVKRVAAAVGEGAQVVAAIHAYLSEPVTTA
>NC_010338.1|WP_012285660.1|1697120_1698311_+|elongation-factor-Tu
MAKEKFERNKPHCNIGTIGHVDHGKTTLTAAITIILAKSGGATAKNYADIDAAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPALVVYMNKVDLVDDEELLELVEMEVRELLSSYDFPGDDIPITKGSAKVAIDGGDPVIGEQSILALMTTVDAYIPQPDRPIDLPFLMPVEDVFSISGRGTVVTGRIEKGVVKVGEEVEIVGIRAVQKTTCTGVEMFRKLLDQGQAGDNVGVLLRGTKREDVERGQVLCKPGSITPHTKFVAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIIKLREGVEMIMPGDNAELDVELITPIAMDQGLRFAIREGGRTVGAGVVAKIVE
>NC_010338.1|WP_012285659.1|1695825_1696662_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MSSHSERNDRKKPSSPGRDFRSKPRENNKFSKGQGDAKDWIWGTHAVEAALSNPARPAPKRLLATADRAKRLAPNLAKAPFLTIMEGAEIARQLPTGAVHQGVALKIDEPEALSVYDLGTPAQGLLVMLDQITDPQNIGAIFRSAAAFGARGVILQDRHAPALTGVLAKTAVGAVDKIAYARVVNLSRALEELADLGWRAVALAGEAQQTLDQVLDGRPTVLVLGSEGEGVRRLVSEHCDAMGKIAMPGGFESLNVSAAAAVALYEASKVRSGDETGS
>NC_010338.1|WP_012285658.1|1694027_1695737_-|hypothetical-protein
MGSGDPMLHNKVRLAALAGCAIGVLVMAGCGAREPVEAPPASSAPGYGAAQTPELMGAAPAAEGAPADGLLGGPAAGPAAVPAPVPVFTSNPKLKTWRRADGVLVTAMDPIANPKARRSVRYAPRAVAAPARRTHAAPVAHAVAQASAKPAPVAHAVAQASAKPAPVAKPAPKPVAVAPAPAALKPVAAPTPVPVIAKAPVVAPPVKTETPKPLTKLQKLQAAVAPEATKGAVLASGESLAQGKAGQVTLSLPATLGDMIKKEAAKLGLTKAARKTSAYADLQGEGYEITPNGRQTAVVKSGEAPTFAWQVKPTPAAKGSLKTEFGVELNGAKPAQGFSLGSIAKQVAPIQDAVTEKTKGFKLGMPSLGGFETIDLPGVGKVPGKSLLGGALVLLALAILVAISRSASANKTRAERRRKFRTLTDYGRNEMDYEAPRPVDVGYVNPMVAAAGGAMAATAVSQHDDHGRHVAPAPEEHKPFEMPAPAPRHDDHGHDDHGVYAAPAERHVAPVAGAEALPVSGHDHAAAHAEDHGQEAHGTEAPNEPAKADHADDHGHDAPTERKELEHAH
>NC_010338.1|WP_012285657.1|1693245_1693986_-|TerC-family-protein
MFDALIAQVGGLNGPFAAFLSVLMIDLVLAGDNAVAVGLAAGGLPAKDRRKVILYGLGAAVVLRIGFALITTWLLGVIGLLLAGGVLLLWVCWKMWRELREQITHDQEDARAIMDGDPATEPRARPAKSFKQAFLQVLIADVSMSLDNVLAVAGAAREHPAVLVFGLLLSIILMGVAASAIANLLHRHRWIGFIGLAIVLYVALHMIWEGHRSVVMDLHKTQSYNAAAPSFLDITPGEIAAHEKHK
>NC_010338.1|WP_041538921.1|1692868_1693246_-|DUF423-domain-containing-protein
MRGAGLVVRLAALSGFLAVAFGAFAAHGVKDPHAAELLHTGALYQMTHALAVFGWLAVRKTGAKAGVAIPALFLVGTLLFSGSLYALAFGAPHMMGLVTPFGGLCFLAGWLMLAWRAGLIESERA
>NC_010338.1|WP_012285655.1|1691509_1692736_+|multidrug-effflux-MFS-transporter
MTDAAQPVPAVIPWRLVLMLGALTAFAPMSIDMYLSSMPEIGRRLHAGADDVQATLAAFFAGMAIGQFLYGPASDRFGRRPPLLLGIGIYVAASVVCALAPSIEVLIAARFVQALGGCAGAVVARAVVRDRFNHADTARVLSLMTLIMGLAPVLAPQLGGVIQFFAGWRGVFWSLVVFGLLIGLWIALGLSESRSEATAVQARSENPFKAYGALLSQKRLVGYGLAGALNGATLFTYISTAPDLVMGTYGHTPLVFNLIFAFNAVGIIGASQVNRLLLRRATPDRVLVRASIASIVAAFLLAAAAWTGVGGQFTVLPLLFAALSSYGLMAGNTMAGALSVDPKRAGSISALMGGASFAAGALAAWIGGLLHDGTARPVAAVMFACLIGSSLAIFGLAVPKGLRGKARV
>NC_010338.1|WP_012285654.1|1690404_1691391_-|alpha/beta-hydrolase
MTQLAPPMPEPSFAQINGIRMAFYEAGPRQGVPIVLCHGFPEFSYSWRWQIAALAAAGRWVIVPDQRGYGLTERPEAVEAYDMAHLTGDLVGLLDHLGVEKAVFCGHDWGGLVVWQMPLMHPERVAGVVGVNTPFLPRLSVDPITVFRNAFGDDMYIVHFQTPGVADAQLAADVEKTMRYFMRKPTEEQAAFTSGASERRSLALQDGLARYDVADDASQLLTPEELATFVETFERTGFTGGINWYRNFVRNWERAEHLPTRIDGIPCLMIMAEHDVVLPPSLADHMGDQISDLEKVLVEGSGHWTQQEKPDQVNAILIDWLGRRFPTS
>NC_010338.1|WP_012285665.1|1704671_1705433_-|outer-membrane-beta-barrel-protein
MKTQLFAAAAVLALAVSAPAFAQNVGSVGAAVNYTDLNTNAFDGNGTSVKVDGNVAIPTGAWTVTLNGNVSVNDTDLSDETVASTAVHLTTKVGDTVRVGGFAALSRPSNDTLWAVGAEASKYFTNVTLNGLVAYGQSNDLNADLYAVRGEARYFVSDDFRLDAGAGYSKIDADAANEADIWDVNLGGEYKFANTGWSTFGKYTHTESDDLADLKSDAVKVGFRYTFGGSLKARDAAGADLIDADTLFGFGVR
>NC_010338.1|WP_004616952.1|1706046_1706355_+|30S-ribosomal-protein-S10
MDRQNIRIRLKAFDHRVLDHSTREIVNTAKRTGATVRGPIPLPTLIEKFTVNRSPHVDKKSREQFEIRTHKRVLDIVDPTPQTVDALMKLDLSAGVDVEIKL
>NC_010338.1|WP_012285666.1|1706370_1707141_+|50S-ribosomal-protein-L3
MTLPANRTGVIAKKLGMTRFFDETGQHVPVTVLSLDGCQVTAQRTVEKDGYTALQLGAGAKKPKNTPNAMRGHFAKNSVEPKRIVAEFRVDEAALIEVGAEFTADHYVAGQKVDIQGITVGKGFAGAMKRWNFSGLRATHGVSVSHRSHGSTGQRQDPGRTFKGKKMAGHLGQETVTTLNVTVWKVDVERGLILVKGAVPGSEGSYVKVRDAIKKAAPADLPRPGAFRSAGEAPAQAAAETPAEETSAATTEEGEG
>NC_010338.1|WP_012285667.1|1707140_1707779_+|50S-ribosomal-protein-L4
MKLDVINLDGGKAGSVDLDDAIFGIADIRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRTGKKMYKQKGTGSARHGSRRAAQFVGGAKAHGPVVRSHAFDLPKKIRAMALRHALSSKAKSGSIIVLDTAVLTDPKTAALRANFDKIGLKNALVIAGPEVDGNFKLAARNIPNIDVLPNAGLNVYDVLRRHTLVLTKDAVEAISARFAEKEAA
>NC_010338.1|WP_007662755.1|1707778_1708075_+|50S-ribosomal-protein-L23
MAATARHYDTILSPVITEKATLLSEQNKVVFRVSADASKDEIAAAVEELFKVKVTKVNTLVTKGKTKRFRGIIGRRSDVKKAIVTLAEGQSIDITTGL
>NC_010338.1|WP_012285668.1|1708079_1708919_+|50S-ribosomal-protein-L2
MALKHFNPTSPGQRGLVLIDRSELHKGRPEKKLVEGLTKSGGRGGNGRIAVRFRGGGAKRLYRLVDFKRRKQGVATVVRLEYDPNRTAFIALIKYQADGELAYILAPQRLKAGDEVVTADKVDVKPGNTSPLRTMPIGTIIHNVELKPAKGGQIARSAGAYAQLVGRDAGYAQIRLNSGELRMVLDTCLATVGAVSNPDHSNQNLGKAGRVRHMGRRPHVRGVAMNPVDHPHGGGEGRTSGGRNPVTPAGKPTKGAKTRVNKATDKFIIRSRHKAKKGR
>NC_010338.1|WP_012285669.1|1708922_1709201_+|30S-ribosomal-protein-S19
MTRSVWKGPFVDGYLLKKADAALASGRKDVIKTWSRRSTIMPQFVGLVFGVHNGQKHVPVSVSEDMVGMKFGEFAPTRNFPGHAADKKAKRK
>NC_010338.1|WP_012285670.1|1709204_1709585_+|50S-ribosomal-protein-L22
MSQAKQPRRLPANEAMCKVRTLRTSARKLNLVAQSIRGLNVQRALNELEFSHKRIAQDVRKALYSAISNAENNHNLDIDSLVVAEAYVGKNLVMKRFSPRARGRATRVEKPFSEITIVVRELGEAA
>NC_010338.1|WP_012285671.1|1709584_1710334_+|30S-ribosomal-protein-S3
MGQKVNPVGLRLGINRTWDSRWFADGEQYGKLLHQDLAVRAMLKKRLYQAGVSRIIIERPHKKCRVTIYAARPGVIIGKKGADIDKLRKDLSVMTEGEVHLNIVEIRKPETDAQLVAESIAQQLERRIAFRRAMKRSIQSAVRLGAKGIRINVSGRLGGAEIARMEWYREGRVPLHTLRADIDYGFAEAKTTYGIIGVKTWIFKGEVLEHDPMALDKRLATESGPAGEGGGRERGDRPDRGDRGRRDRG
>NC_010338.1|WP_012285672.1|1710346_1710787_+|50S-ribosomal-protein-L16
MLSPKKTKYRKQFKGRIHGTSKGGTLLNFGSYGLKAVEPERITARQIEAARRAITRQMKRQGRVWIRIFPDVPVTGKPAEVRMGKGKGAVDHWAARVAPGRIMFEIDGVPDDIAREALRLGAAKLPIRTRVVTRIDAGAALEAEAA

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Crispr_ID: NC_010338_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010338_2

5124344-5124414

Orphan

Consensus_repeat	Method
GCCTTGGGGGCGGCGGGCTTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010338_2

>merge|NC_010338|2|5124344-5124414|CRISPRCasFinder
GCCTTGGGGGCGGCGGGCTTCTTGGCGGCGGGGGTCGCGACAGCGGCGGCCTTCGGGGCGGCAGCAGCCTT

>NC_010338|2|2|5124344-5124414|CRISPRCasFinder
GCCTTGGGGGCGGCGGGCTTCTT	GGCGGCGGGGGTCGCGACAGCGGCG
GCCTTCGGGGCGGCAGCAGCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010338.1\|WP_012288737.1\|5132377_5133022_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NC_010338.1\|WP_012288731.1\|5126072_5127605_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NC_010338.1\|WP_012288726.1\|5122349_5122610_-\|ATP-synthase-F1-subunit-epsilon	unknown	unknown	gnl\|CDD\|184058
NC_010338.1\|WP_012288724.1\|5120156_5120897_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NC_010338.1\|WP_012288734.1\|5128837_5129185_-\|hypothetical-protein	unknown	unknown	unknown
NC_010338.1\|WP_012288733.1\|5128419_5128656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239527
NC_010338.1\|WP_012288721.1\|5116050_5117625_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NC_010338.1\|WP_012288736.1\|5130891_5132184_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173838
NC_010338.1\|WP_012288720.1\|5115505_5116018_+\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NC_010338.1\|WP_041539165.1\|5127652_5128207_-\|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl\|CDD\|365949
NC_010338.1\|WP_012288722.1\|5117669_5118419_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_010338.1\|WP_012288727.1\|5122609_5122858_-\|hypothetical-protein	unknown	unknown	unknown
NC_010338.1\|WP_012288723.1\|5119651_5119975_-\|quaternary-ammonium-compound-efflux-SMR-transporter-SugE	unknown	unknown	gnl\|CDD\|171110
NC_010338.1\|WP_012288725.1\|5121054_5122185_-\|HPP-family-protein	unknown	unknown	gnl\|CDD\|225979
NC_010338.1\|WP_012288729.1\|5124543_5125428_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NC_010338.1\|WP_085953680.1\|5118520_5119466_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_010338.1\|WP_012288735.1\|5129481_5130672_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
NC_010338.1\|WP_012288730.1\|5125435_5126065_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|132626
NC_010338.1\|WP_012288719.1\|5114321_5115509_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225416
NC_010338.1\|WP_150108080.1\|5133175_5133943_+\|methanol-dehydrogenase	unknown	unknown	gnl\|CDD\|224429

Protein	Function_ID	Function_description	E-value
NC_010338.1\|WP_012288737.1\|5132377_5133022_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	2.85629e-75
NC_010338.1\|WP_012288731.1\|5126072_5127605_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NC_010338.1\|WP_012288726.1\|5122349_5122610_-\|ATP-synthase-F1-subunit-epsilon	gnl\|CDD\|184058	PRK13449, atpC, ATP synthase F1 subunit epsilon.	1.14682e-44
NC_010338.1\|WP_012288724.1\|5120156_5120897_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	1.41522e-09
NC_010338.1\|WP_012288733.1\|5128419_5128656_-\|hypothetical-protein	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	0.000275338
NC_010338.1\|WP_012288721.1\|5116050_5117625_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.38884e-17
NC_010338.1\|WP_012288736.1\|5130891_5132184_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173838	cd00567, ACAD, Acyl-CoA dehydrogenase. Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC).	6.37038e-86
NC_010338.1\|WP_012288720.1\|5115505_5116018_+\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	4.32834e-76
NC_010338.1\|WP_041539165.1\|5127652_5128207_-\|F0F1-ATP-synthase-subunit-delta	gnl\|CDD\|365949	pfam00213, OSCP, ATP synthase delta (OSCP) subunit. The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401.	6.80639e-54
NC_010338.1\|WP_012288722.1\|5117669_5118419_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.43922e-20
NC_010338.1\|WP_012288723.1\|5119651_5119975_-\|quaternary-ammonium-compound-efflux-SMR-transporter-SugE	gnl\|CDD\|171110	PRK11431, PRK11431, quaternary ammonium compound efflux SMR transporter SugE.	2.48934e-35
NC_010338.1\|WP_012288725.1\|5121054_5122185_-\|HPP-family-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	5.9847e-100
NC_010338.1\|WP_012288729.1\|5124543_5125428_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	2.01177e-140
NC_010338.1\|WP_085953680.1\|5118520_5119466_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	3.30291e-48
NC_010338.1\|WP_012288735.1\|5129481_5130672_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	5.69706e-09
NC_010338.1\|WP_012288730.1\|5125435_5126065_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|132626	TIGR03587, Pse_Me-ase, pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme.	5.74388e-48
NC_010338.1\|WP_012288719.1\|5114321_5115509_+\|hypothetical-protein	gnl\|CDD\|225416	COG2861, COG2861, Uncharacterized protein conserved in bacteria [Function unknown].	2.05365e-80
NC_010338.1\|WP_150108080.1\|5133175_5133943_+\|methanol-dehydrogenase	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.70658e-64

>NC_010338.1|WP_012288727.1|5122609_5122858_-|hypothetical-protein
MTDELELINFCCEELEDAVSSDPEASLIEHDSGLILLNLGHREEEGETGVVLATIRFCPFCGTEIQTDEDIETALGAVEIVE
>NC_010338.1|WP_012288726.1|5122349_5122610_-|ATP-synthase-F1-subunit-epsilon
MAKLHFSLVAPERELFSAEVDQVDAPGAEGDFGVLPGHAPFMTTLREGKVTVRDGSKLRVFDIQGGFADVGPDGFTILAEHAVEAA
>NC_010338.1|WP_012288725.1|5121054_5122185_-|HPP-family-protein
MRQTLTLALRGRNPIRPADILRSGLGALLGVPATGLLAHMVASGHASALPLLVPPIGASAVLAFAVPASPLAQPRAVIGGNMVSALAGVTCALAFHPHPALAAAAAVACAIIAMGLLGCLHPPGGAVALGAALVAGPVGPASYAYVFVPIGLCSGLLVLAAMAYARVAGRSYPHRVPPPANVHATLDAPPSQRVGFTAADIDNALAHYGDLLDVDREDLDALFREVELQAHRRIHAHILCSDIMSRDVLSVDLHQTAESALAYMRTHDLRAAPVVDADRRVVGMVRRAELQTGREGLVEAVLDPFVHKVRPGTAIEALLPILSSGVAHEAMVVDEHRVLLGIITQTDLLGVLYRAHIVEAVALQRAEEAGAIDPTI
>NC_010338.1|WP_012288724.1|5120156_5120897_-|hypothetical-protein
MRLALASLIAPILLVGGAVSTAAVAQETTTPAAAPAAAPAPAAAPAPADPAAQAQTPAAPAPADGMQAVPPVAAPPAGTEPAYVEPTRGPPTTDPVSMQLLSVLDQVCKPAVVGGDFQALVKAAGMKKKKEQWVKDIGKPYLIAIDNPGSNKNVCTVTIQYAQGDAQAQALANALHDWATWENKPQLRLIRNDLTVSDVKRLTVSWDDAWADGHAGLVYMRLKKLDDSSVGKNYEQAQILYSTTSR
>NC_010338.1|WP_012288723.1|5119651_5119975_-|quaternary-ammonium-compound-efflux-SMR-transporter-SugE
MAWLILFIAGLFEIGWAVGLKFTEGFTRPIPTVFTGVSLVASMGLLGWAVKSLPLGTAYAVWTGVGAVGTAIVGILLFKEPATVGRLVCLALIVSGILGLKLFTPAQ
>NC_010338.1|WP_085953680.1|5118520_5119466_+|IS630-family-transposase
MGKPCSLDLRERVVAAVETGGLSRKQAAARFGVAPSSAIKWVARFRATGSAAPAKMGGHKPRTLRDEHADWLIARCQAKDFTISQLVEELRLARGLKVDRRSVWEFLHAQGLSFKKSLFAKEQDRPDVARRREQWRKYQGRIDANRLVFIDETWAKTNMAPLRGWGPCGARLKAKAPFGRWKTLTFIAALRCDRIEAPCLLDGPINGQVFLAWVQTFLVPTLRAGDVVIMDNLGSHRGKLVRQAIRQAGARLIFLPKYSPDLNPIEQVFSKLKHLLRKAQARSYDGLLKATGTLLNVFPPEECANYLRNSGYAA
>NC_010338.1|WP_012288722.1|5117669_5118419_+|alpha/beta-hydrolase
MATPVIMVHGAFCGGWTFDTFRQPFEAAGHPVQTPNLLGHGDGALVAGRSMIDYAKQIAALCEACDEPPILIGHSMGGLVAQMAAARAPVSRLILLAPSPPWGVTGSSLEEAASAVSLYALGPYWLQAVAPDYSVVEGYTLDRLPREERKALYAQMHAESGRALWETLNWFMDPFMTTGASPVGVATLAIAGGKDVIHPPATVRQTAGRLGGVCEVFPHMSHWLPGEPGWEAVAQACLDFIADESRVAA
>NC_010338.1|WP_012288721.1|5116050_5117625_+|alpha/beta-hydrolase
MTKTILMIHGFGAAGESWAPVAARFKSAGYTVEAPTIQAALRTVGAPPAGLAGKTLSDYVGEMSDLAEAIATRDGIKPVVFGHSMGGLIAQKLAEAGLVSGAVLFAPASPADARGKPSLSALFTFLNIVAASKPETKAVKIWRTGFLWGVLNKTPPERREAIFATTVHDSGQVLTDLAYPERDPRRTAHVDASKVTAPVLILGGAQDRTTPIADLRLVAKKYAGSTFKEYPNNGHWLVDEPGSAGILADVAAWLDAKGLGVKAPVVTATPAPAAKAAAPKAEPAKPVVAAAPVPAAKPAPKAKAPASAKTAPASKAPAKTDPAPKAAAPKAAPAPKVVKAAPAPKAATSAPKAPSKPAAKAAPAPKAKTPVKAVPVATPAAAPAKTAAKPPAKAKAVPAPKAAPAAKPAPAPKPEAAKAKPAAAPTAAKAPAKAVSPKPKAAAPAAKDTAVRTPAAKAPAAKAPAKAANPAPKVAPTKVKSAAAKPAAAKAPAATKAAPPAKTPAKAPATKSTAKSSPSAKKSV
>NC_010338.1|WP_012288720.1|5115505_5116018_+|RNA-pyrophosphohydrolase
MSAGNTPPSPLGDPYPDHRPNVGVVLFHPDGRVWLGKRHNQPPPHNWQFPQGGVDPGEDLLDAARRELQEETGVSSALYLGRTEGWLIYDFPADFASSKKARGFKGQKQAWFAFRFTGDEAEIDLEADAHVEFDAWKWGALDETPELIVPFKRAVYERVVSAFSGFARGG
>NC_010338.1|WP_012288719.1|5114321_5115509_+|hypothetical-protein
MAVSFSRKPAYGADAPAPALGRGDHDDLRAKILAAAANPYIGASAAAFLFLLSLALLVLLTGDPNKGSPMVRVELTKIGATRNAPSGWREALVNEGDKEAPLLPGALDLSNLPFISHPDTAAEAEAIAAPPPMASATGPLPAAPLAGFYTPGPGGGVLPVIAPDGRTAAEAYARPFTADGRPKVALVIGGLGLNPQTTRAAIETLPPEITLSFAPYAEGLQGWIDLARSHGHEVLLEAPMEPVDYPANDPGPYTLITANRPEDTVRKLEWLMSRATGYFGLTNYLGSRFVTSDTAMTTFTLALKSRGLAFIDDGQASLRGGPIPRASADRIIDDELAAGSIDGQLKMLETGAAGRGQALGSGFAYPVTITQVRLWAAGLSGRGLQLAPASAMAKR
>NC_010338.1|WP_012288729.1|5124543_5125428_-|F0F1-ATP-synthase-subunit-gamma
MASLKEMRNRIASVKATQKITKAMQMVAAAKLRRSQDAAEAARPYARRLAAVIANLAAGVTGDGAPPMLAGTGRDDRHLIIVAAADRGLAGGFTSSIVRAARERIETLIAQGKDVKIVCIGKKSTAQLRRLYSDRIVEDFDLSAYRQFTLTVAQPIADVVTRLYEAGDVDVVTLFYSRFKSVVIQTPTALQLIPATVDGANAPAAAQGAQAVYEYEPSEEEILETLLPRNLTVQILSALLDNMAGFYASQMTAMDNATRNAGDMIKRYTLEYNRSRQAQITKELIEIISGAEAV
>NC_010338.1|WP_012288730.1|5125435_5126065_-|methyltransferase-domain-containing-protein
MEASPKSLDAWSGEFGDRYTQRSGATAEAVRGRARVWGEVLRRMTGDMPKSVLEVGPNVGLNLLGLQALSDMEQWAIEPNASARKQLVENGVLPAERLFEGFGHSIPLADGAVDMAFTAGVLIHVDPSQLEATMREVHRVASKYVFCSEYFSPKAETITYRGEQDLLFKNDFGSLYMDMFPDLQLVDYGFFWRRTTVMDDSTWWLFRKV
>NC_010338.1|WP_012288731.1|5126072_5127605_-|F0F1-ATP-synthase-subunit-alpha
MDIRAAEISAILKSQIANFGEEAAVSDVGQVLSVGDGIARIYGLDNVQAGEMVEFPKAGVKGMALNLERDNVGAVIFGQDQAIKEGDEVRRLGEIVDVPVGRGLLGRVVNPLGEPIDGKGPIVSTERRRVDVKAPGIIPRKSVHEPVQTGLKSIDTLIPVGRGQRELIIGDRQTGKTAVAIDTILNQKAANAGTDESAKLYCVYVAIGQKRSTVAQIVKTLEEHGALEYTIVVVASASEPAPLQYLAPFSGCAMGEWFRDNGLHGLIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLNEDNGSGSLTALPIIETQANDVSAYIPTNVISITDGQIFLETDLFYQGIRPAVNVGISVSRVGSSAQIKAMKQVAGAIKGELAQYREMAAFAKFGSDLDASTQKLLARGERLTELLKQPQYAPQAVEEQVCVIYAGTRGYLDNIPTSSVRRFESELLARLHSQHKDLLDNIRTKKALDKDLENTLKSVLDNFSATFA
>NC_010338.1|WP_041539165.1|5127652_5128207_-|F0F1-ATP-synthase-subunit-delta
MADETKATDAGQRYAQSLFELTIENNQLTKVEADLKSLRAMVAASTDLRRLLESPAFSAEDKAKGLTAVAAKAGFQLLTAKFLGLVASNGRAGDLMGAITAFVEMSAQHRGVVTAEVVTASALTAAQLKGVSTAVASALGKTPEISTRVDPSILGGIKVRVGSRLFDASLRSKLDSLKFALKRA
>NC_010338.1|WP_012288733.1|5128419_5128656_-|hypothetical-protein
MTTSTAALLEDALREIAGPDAEPTSMTVDYGFIAQPVAAKAWIERSTRSLVFAQAEARTADGAMVAAASAVFRRVIPT
>NC_010338.1|WP_012288734.1|5128837_5129185_-|hypothetical-protein
MKLQSLAAVAALSSAMAVSLFAGSAFADGRIAVALENPLTAKTKVVAGGAVFVCEGAECVSTAAPSRALTATSCKALAKEVGRVAAFGGDSKSLDADDLTRCNASAKAGVQTAAK
>NC_010338.1|WP_012288735.1|5129481_5130672_-|FAD-binding-oxidoreductase
MNQTRTSSRRALLAGLGGLGATSLAGCVTTGGARTLATPSRPRFVVPSLAPLRMSADRITKITVCLRPFRAAGPRLDVENVAGKRVVHNYGHGGSGWSLSWGSSTIAARNALEGGTKEVAVIGCGALGLTSALLLQRAGAKVTIYAKERTPQTRSFRATGTWSPDSRVADADKVAPGFPALWEEMARTSYAAYQTLLGLPGEPVSWSDRYTLSDGAGGGGRPHVDGAVRFAEYGERLHDIVPGFRDLSADEHPFPVSRVRHGVSMQFNVTDLAHMLTNDFLMEGGRIETMTFDTPADLARLKESVVVNCTGYGARALWKDETITPVRGQITWLAPQPEVRYGLYYRHVSVLPRPDGIVVQQVGDSDMWGYGVADERPDRAEAEAAVATIANLYAGA
>NC_010338.1|WP_012288736.1|5130891_5132184_+|acyl-CoA-dehydrogenase-family-protein
MDFNLPPELTAYLATLDAFIAAEIAPLQAEHDNERFFDHRREWARTDWDGGGLPRRDWEDLLAKARGVADAAGHYRFALPKAYGGQDGSNLWMAVIREHLAAKGLGLFNDLQNEHSIVGNNPFVLMIRDFGRPDQQHLIPDMLDRHAFRPTFGLTEPNHGSDATFMETRAVREDHNGVAGWRIDGEKMWTTGMHAATHCALFARTSGEDGSAKGITCFLVPAHAPGVKIEEYLWTFNMPTDHPRVSFTKVWVPEDAMFGPEDGGLALAQHFVHENRIRQAASSLGAATFCIEESIKYARTRKPFGKALAENQAIQFPIVELSTQAEMLRLLIRKTAWEMDQMTKPEVEKRLSDKVSMCNYWANRLVCEAADRAMQIHGGLGYSRHKPFEHIYRHHRRYRITEGSEEIQMRKVAAWLFGYMGPRKAAFAAI
>NC_010338.1|WP_012288737.1|5132377_5133022_+|LemA-family-protein
MRMLKTLTRLAPVLAVSLFLAGCGINTIPTQDEATKTAWAEVQNQYQRRADLIPNLVATVKGYAAQEKDVLTAVTEARASATQVKVDASTITDPAQFQQYAAAQDKLSGVLGRLMMIQESYPELKSNQNFLALQSQLEGTENRISIARRDYNNTAQVYNTTLRTFPSIIWAKTLYGSQKPAQLFQATANAQSAPNVDFSAPPAPAVNTQPAPAN
>NC_010338.1|WP_150108080.1|5133175_5133943_+|methanol-dehydrogenase
MRSYVLAFLALFIFTLPALAAAPAFPTLTGRVVDEANILSPQVEADLTTKLEDLDKATGRQLVVVTLPSLQGYEIEDYGYQLGRTWGIGEKGTNTGALLIVAPTERKVRIEVGYGLEPILTDALSSVIIQATILPKFKAGDLEGGVTAGTDAVIAQLALPDEEAKAKAQQAFEVTAGADRAPRASPIIGLIIFIIIIVLLSSLFGGRRRGGLGSALPWIILNGMLSGGRGGGGGGGGGFSGGGGSFGGGGSSGSW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NZ_LR134461	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence	69047-69071	2	0.92
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NC_030917	Gordonia phage OneUp, complete genome	60623-60647	2	0.92
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NZ_CP020399	Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence	1603-1627	3	0.88
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	98383-98407	3	0.88
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NZ_CP021914	Sagittula sp. P11 plasmid unnamed1, complete sequence	347154-347178	3	0.88
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2394730-2394754	4	0.84
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NZ_LT900339	Gluconobacter oxydans 621H isolate WT-DSMZ plasmid 2	104236-104260	4	0.84
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NC_006672	Gluconobacter oxydans 621H plasmid pGOX1, complete sequence	104233-104257	4	0.84
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NC_022044	Paracoccus aminophilus JCM 7686 plasmid pAMI6, complete sequence	5165-5189	4	0.84
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NZ_CP012918	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence	187814-187838	4	0.84
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NC_009475	Bradyrhizobium sp. BTAi1 plasmid pBBta01, complete sequence	124318-124342	4	0.84
NC_010338_2	2.1\|5124367\|25\|NC_010338\|CRISPRCasFinder	5124367-5124391	25	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	806854-806878	4	0.84
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1496701-1496732	6	0.812
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_CP044073	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence	15994-16025	7	0.781
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	166705-166736	7	0.781
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	166705-166736	7	0.781
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	157183-157214	8	0.75
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	163297-163328	8	0.75
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	158256-158287	8	0.75
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	167162-167193	8	0.75
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	167163-167194	8	0.75
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	157197-157228	8	0.75
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	157195-157226	8	0.75
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	157193-157224	8	0.75
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	986252-986283	8	0.75
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	826873-826904	8	0.75
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	864635-864666	10	0.688
NC_010338_1	1.3\|1704331\|32\|NC_010338\|CRISPRCasFinder	1704331-1704362	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	99-130	11	0.656

1. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NZ_LR134461 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence) position: , mismatch: 2, identity: 0.92

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
ggcggcgggggtcgcgacggtggcg	Protospacer
******************.*.****

2. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NC_030917 (Gordonia phage OneUp, complete genome) position: , mismatch: 2, identity: 0.92

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
ggcggcggcggtggcgacagcggcg	Protospacer
******** *** ************

3. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NZ_CP020399 (Burkholderia multivorans strain FDAARGOS_246 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.88

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
ggcggcgggggtggcgacggcggca	Protospacer
************ *****.*****.

4. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 3, identity: 0.88

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
tgcggcgggggtcgggaccgcggcg	Protospacer
 ************* *** ******

5. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.88

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
tgcggcgggggtcgcggcggcggcg	Protospacer
 ***************.*.******

6. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 4, identity: 0.84

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
ggcggccggggtcgcggcagcggtc	Protospacer
****** *********.******.

7. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NZ_LT900339 (Gluconobacter oxydans 621H isolate WT-DSMZ plasmid 2) position: , mismatch: 4, identity: 0.84

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
aggggcggggctcgcgacagcggcc	Protospacer
.* ******* *************

8. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NC_006672 (Gluconobacter oxydans 621H plasmid pGOX1, complete sequence) position: , mismatch: 4, identity: 0.84

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
aggggcggggctcgcgacagcggcc	Protospacer
.* ******* *************

9. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NC_022044 (Paracoccus aminophilus JCM 7686 plasmid pAMI6, complete sequence) position: , mismatch: 4, identity: 0.84

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
ctcggcgcgggtcgcgacatcggcg	Protospacer
  ***** *********** *****

10. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NZ_CP012918 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence) position: , mismatch: 4, identity: 0.84

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
atcggcgaggttcgcgacagcggcg	Protospacer
. *****.** **************

11. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NC_009475 (Bradyrhizobium sp. BTAi1 plasmid pBBta01, complete sequence) position: , mismatch: 4, identity: 0.84

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
cgcggcggcggtcgcgccagcggcc	Protospacer
 ******* ******* *******

12. spacer 2.1|5124367|25|NC_010338|CRISPRCasFinder matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 4, identity: 0.84

ggcggcgggggtcgcgacagcggcg	CRISPR spacer
atcggcgaggttcgcgacagcggcg	Protospacer
. *****.** **************

13. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
ccgtcaccgccgtcagcgtcaacggcacggcc	Protospacer
 ***********.*********.**** * .*

14. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_CP044073 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtcaccgccgccagcgtcaatgg---caagctc	CRISPR spacer
tggtcaacgccgccaacgtcaatggctccaag---	Protospacer
  **** ********.*********   ****

15. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtcaccgccgccagcgtcaat---ggcaagctc	CRISPR spacer
ccgtcaccgacggcagcgtcaatgcggtcaag---	Protospacer
 ******** ** **********   * ****

16. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 7, identity: 0.781

gcgtcaccgccgccagcgtcaat---ggcaagctc	CRISPR spacer
ccgtcaccgacggcagcgtcaatgcggtcaag---	Protospacer
 ******** ** **********   * ****

17. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
gcggcacggccgccagcgtcaatgtcgacgga	Protospacer
*** *** **************** *.*

18. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
gcggcacggccgccagcgtcaatgtcgacgga	Protospacer
*** *** **************** *.*

19. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
gcggcacggccgccagcgtcaatgtcgacgga	Protospacer
*** *** **************** *.*

20. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
gcggcacggccgccagcgtcaatgtcgacgga	Protospacer
*** *** **************** *.*

21. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
gcggcacggccgccagcgtcaatgtcgacgga	Protospacer
*** *** **************** *.*

22. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
gcggcacggccgccagcgtcaatgtcgacgga	Protospacer
*** *** **************** *.*

23. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
gcggcacggccgccagcgtcaatgtcgacgga	Protospacer
*** *** **************** *.*

24. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
gcggcacggccgccagcgtcaatgtcgacgga	Protospacer
*** *** **************** *.*

25. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
gtaccaccgccgccagcgccaacggcagaccc	Protospacer
*...**************.***.****..*.*

26. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.75

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
gtaccaccgccgccagcgccaacggcagaccc	Protospacer
*...**************.***.****..*.*

27. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 10, identity: 0.688

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
atagcaccgccgccagcgacaatgacaggtcg	Protospacer
... ************** *****.**.*..

28. spacer 1.3|1704331|32|NC_010338|CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 11, identity: 0.656

gcgtcaccgccgccagcgtcaatggcaagctc	CRISPR spacer
cgacttgggccgccagcgtcaacgccaagctg	Protospacer
  ...   **************.* ******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1147450 : 1173597

Wolbachia_phage(33.33%)

tail,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012285146.1\|1147450_1148389_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	8.0e-26	34.2
WP_012285147.1\|1148688_1149057_-	hypothetical protein	NA	NA	NA	NA
WP_041539327.1\|1149487_1150849_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_012285149.1\|1150935_1154115_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_012285150.1\|1154328_1155507_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012285151.1\|1155922_1156561_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012285152.1\|1157076_1157304_+	hypothetical protein	NA	NA	NA	NA
WP_012285153.1\|1157361_1158330_-	magnesium and cobalt transport protein CorA	NA	NA	NA	NA
WP_012285154.1\|1158494_1160171_+	MFS transporter	NA	NA	NA	NA
WP_150108120.1\|1160275_1160758_-	hypothetical protein	NA	NA	NA	NA
WP_012285156.1\|1161118_1162243_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_083779705.1\|1162245_1162830_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012285158.1\|1162865_1163156_+	hypothetical protein	NA	NA	NA	NA
WP_012285159.1\|1163279_1163825_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012285160.1\|1163857_1164409_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012285161.1\|1164446_1164986_-\|tail	phage tail protein	A0A222ZG41	Arthrobacter_phage	8.4e-20	38.7
WP_012285162.1\|1165426_1172464_+	hemolysin-type calcium-binding protein	NA	NA	NA	NA
WP_012285164.1\|1172914_1173301_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	7.4e-18	40.5
WP_049771898.1\|1173189_1173597_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

2083782 : 2155240

Shigella_phage(16.67%)

transposase,integrase

attL 2151162:2151199|attR 2154475:2154512

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085953693.1\|2083782_2084954_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.9e-55	43.6
WP_012285990.1\|2085364_2086042_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012285991.1\|2086195_2086924_+	acetoacetyl-CoA reductase	NA	NA	NA	NA
WP_012285992.1\|2087010_2087433_+	hypothetical protein	NA	NA	NA	NA
WP_150108002.1\|2087456_2088920_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_012285994.1\|2088916_2089987_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012285995.1\|2089983_2092749_+	ribosome-associated ATPase/putative transporter RbbA	A0A2H4PQG7	Staphylococcus_phage	7.9e-21	30.0
WP_012285996.1\|2092750_2093872_+	ABC transporter permease	NA	NA	NA	NA
WP_012285997.1\|2093969_2094410_+	hypothetical protein	NA	NA	NA	NA
WP_012285998.1\|2094464_2095652_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_012285999.1\|2095784_2096987_-	acetate/propionate family kinase	NA	NA	NA	NA
WP_012286000.1\|2096988_2098407_-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase	NA	NA	NA	NA
WP_012286001.1\|2098410_2100171_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_150108134.1\|2100483_2101494_+	AI-2E family transporter	NA	NA	NA	NA
WP_012286003.1\|2101596_2102352_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_041538942.1\|2102427_2102820_-	DUF2059 domain-containing protein	NA	NA	NA	NA
WP_012286005.1\|2103024_2103486_-	hypothetical protein	NA	NA	NA	NA
WP_012286006.1\|2103870_2104467_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_012286007.1\|2104659_2105871_-	patatin	NA	NA	NA	NA
WP_041538943.1\|2106127_2106700_-	membrane protein	NA	NA	NA	NA
WP_160164171.1\|2106906_2107245_-	hypothetical protein	NA	NA	NA	NA
WP_012286011.1\|2108033_2108615_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012286012.1\|2108529_2111319_-	TonB-dependent receptor	NA	NA	NA	NA
WP_012286013.1\|2111345_2112356_-	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_049771776.1\|2112359_2112941_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_049771778.1\|2113180_2116063_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	9.4e-25	23.3
WP_012286016.1\|2116124_2117072_+	glycerophosphodiester phosphodiesterase family protein	NA	NA	NA	NA
WP_012286017.1\|2117114_2117831_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_083779796.1\|2119455_2120775_+	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_012286019.1\|2120817_2121387_+	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA
WP_012286020.1\|2121409_2122723_+	amidohydrolase	NA	NA	NA	NA
WP_049771779.1\|2123018_2124605_+	response regulator	A0A1V0SGX0	Hokovirus	6.1e-42	33.1
WP_012286022.1\|2125050_2126298_+	hypothetical protein	NA	NA	NA	NA
WP_083779719.1\|2126533_2127310_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012286024.1\|2127527_2127800_-	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_012286025.1\|2127985_2128807_+	DUF2285 domain-containing protein	NA	NA	NA	NA
WP_012286026.1\|2129367_2129847_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_150108003.1\|2130151_2130841_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012286029.1\|2131322_2131961_+	lasso peptide biosynthesis B2 protein	NA	NA	NA	NA
WP_041538946.1\|2131957_2133712_+	lasso peptide isopeptide bond-forming cyclase	NA	NA	NA	NA
WP_012286031.1\|2133706_2136148_-	S9 family peptidase	NA	NA	NA	NA
WP_150108004.1\|2136192_2139246_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	3.3e-28	23.7
WP_012286033.1\|2139477_2140512_-	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_012286034.1\|2140525_2141062_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_012286035.1\|2141203_2141413_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012286036.1\|2141504_2141729_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_150108135.1\|2142089_2142827_-	hypothetical protein	NA	NA	NA	NA
WP_012286038.1\|2143014_2143518_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012286039.1\|2143530_2144163_-	hypothetical protein	NA	NA	NA	NA
WP_012286040.1\|2144166_2144382_-	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_012286041.1\|2144537_2144957_+	hypothetical protein	NA	NA	NA	NA
WP_012286042.1\|2144956_2145361_+	hypothetical protein	NA	NA	NA	NA
WP_012286043.1\|2145363_2146776_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_012286045.1\|2147214_2148318_+	thymidylate synthase	G3MA60	Bacillus_virus	8.8e-32	29.8
WP_085953693.1\|2148252_2149424_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.9e-55	43.6
WP_012286046.1\|2149371_2150082_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012286047.1\|2150448_2151225_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	5.2e-31	36.1
2151162:2151199	attL	NA	NA	NA	NA
WP_012275027.1\|2151284_2152496_+\|integrase	tyrosine-type recombinase/integrase	A0A2K9VF00	Mycobacterium_phage	3.6e-10	28.9
WP_012275026.1\|2152492_2153434_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012275025.1\|2153430_2154423_+\|integrase	site-specific integrase	A0A142F1N9	Bacillus_phage	2.2e-21	26.5
WP_012286048.1\|2154425_2154869_+	hypothetical protein	A0A1V0EEV1	Caulobacter_phage	4.2e-17	57.8
2154475:2154512	attR	NA	NA	NA	NA
WP_012286049.1\|2154865_2155240_+	DUF2958 domain-containing protein	A0A1B1INN6	uncultured_Mediterranean_phage	4.3e-07	34.9

DBSCAN-SWA_3

3755092 : 3791240

Gordonia_phage(22.22%)

head,capsid,integrase,tail,portal,protease

attL 3750387:3750402|attR 3794051:3794066

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3750387:3750402	attL	NA	NA	NA	NA
WP_012287500.1\|3755092_3755617_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012287501.1\|3755778_3756288_+	hypothetical protein	NA	NA	NA	NA
WP_041539054.1\|3756302_3756503_+	hypothetical protein	NA	NA	NA	NA
WP_012287502.1\|3756502_3756883_+	hypothetical protein	NA	NA	NA	NA
WP_150108047.1\|3757031_3757487_+	response regulator transcription factor	NA	NA	NA	NA
WP_041539056.1\|3757483_3757762_+	hypothetical protein	NA	NA	NA	NA
WP_012287503.1\|3758376_3758757_-	hypothetical protein	NA	NA	NA	NA
WP_012287504.1\|3759239_3759464_-	hypothetical protein	NA	NA	NA	NA
WP_012287505.1\|3759463_3759961_-	hypothetical protein	NA	NA	NA	NA
WP_012287506.1\|3760052_3760595_+	hypothetical protein	NA	NA	NA	NA
WP_012287507.1\|3760584_3761946_+	DNA-packaging protein	A0A0K0N6T3	Gordonia_phage	2.3e-34	29.7
WP_041539059.1\|3762004_3763381_+\|portal	phage portal protein	A0A2H4P9U1	Gordonia_phage	5.0e-08	25.2
WP_012287509.1\|3763419_3764154_+\|head,protease	HK97 family phage prohead protease	W8EBB3	Geobacillus_phage	1.1e-25	42.1
WP_012287510.1\|3764290_3765475_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_012287511.1\|3765620_3766247_+	hypothetical protein	A0A075E0W9	Dickeya_phage	9.5e-07	53.1
WP_012287512.1\|3766306_3766936_+	hypothetical protein	NA	NA	NA	NA
WP_012287513.1\|3766928_3767243_+	hypothetical protein	NA	NA	NA	NA
WP_012287514.1\|3767239_3767587_+	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_012287515.1\|3767583_3767946_+	hypothetical protein	NA	NA	NA	NA
WP_012287516.1\|3768007_3768463_+	hypothetical protein	NA	NA	NA	NA
WP_012287517.1\|3768464_3768842_+	hypothetical protein	NA	NA	NA	NA
WP_012287518.1\|3769125_3771684_+	hypothetical protein	D6PGV6	uncultured_phage	5.1e-06	66.7
WP_012287519.1\|3771688_3772021_+	hypothetical protein	NA	NA	NA	NA
WP_160164183.1\|3772029_3772548_+	hypothetical protein	NA	NA	NA	NA
WP_012287521.1\|3772544_3773336_+	C40 family peptidase	NA	NA	NA	NA
WP_012287522.1\|3773301_3776184_+\|tail	phage tail protein	A0A0R6PID2	Moraxella_phage	5.9e-43	26.2
WP_012287523.1\|3776191_3778693_+	hypothetical protein	A0A0K1LM66	Caulobacter_phage	4.0e-24	36.4
WP_049771831.1\|3778689_3779100_+	hypothetical protein	M4NK32	Synechococcus_phage	1.3e-07	50.8
WP_012287524.1\|3779148_3781848_+	hypothetical protein	A0A0P0YMK6	Yellowstone_lake_phycodnavirus	6.8e-09	51.6
WP_012287525.1\|3781847_3782384_+	hypothetical protein	NA	NA	NA	NA
WP_012287526.1\|3782408_3782780_+	hypothetical protein	NA	NA	NA	NA
WP_041539067.1\|3782805_3782991_+	hypothetical protein	NA	NA	NA	NA
WP_012287528.1\|3782997_3783264_+	hypothetical protein	NA	NA	NA	NA
WP_041539068.1\|3783546_3784377_+	hypothetical protein	NA	NA	NA	NA
WP_012287530.1\|3784416_3785856_-	hypothetical protein	NA	NA	NA	NA
WP_012287531.1\|3786744_3787437_+	hypothetical protein	NA	NA	NA	NA
WP_012287533.1\|3788135_3788507_-	hypothetical protein	NA	NA	NA	NA
WP_012287534.1\|3788583_3789726_+	serine hydrolase	NA	NA	NA	NA
WP_012287535.1\|3789822_3790161_-	hypothetical protein	NA	NA	NA	NA
WP_012287536.1\|3790310_3791240_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
3794051:3794066	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4202799 : 4233551

Paracoccus_phage(30.0%)

head,capsid,tail,portal,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085953712.1\|4202799_4203551_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012287898.1\|4203709_4204078_+	transcriptional regulator	NA	NA	NA	NA
WP_012287899.1\|4204067_4204967_+	peptidase M56	NA	NA	NA	NA
WP_150108057.1\|4205084_4205633_+	hypothetical protein	NA	NA	NA	NA
WP_012287901.1\|4205647_4207054_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012287902.1\|4207057_4207372_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012287903.1\|4207371_4207593_-	hypothetical protein	NA	NA	NA	NA
WP_012287904.1\|4207649_4208321_-	response regulator transcription factor	NA	NA	NA	NA
WP_012287905.1\|4208453_4210028_-	PDZ domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	2.9e-20	27.8
WP_012287906.1\|4210174_4210630_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_012287907.1\|4210803_4212780_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_012287908.1\|4212928_4213429_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_012287909.1\|4213425_4214550_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_012287910.1\|4214648_4215989_-	hypothetical protein	NA	NA	NA	NA
WP_085953713.1\|4216196_4217585_-	sensor histidine kinase	NA	NA	NA	NA
WP_012287912.1\|4217742_4218423_-	response regulator transcription factor	NA	NA	NA	NA
WP_012287913.1\|4218442_4218760_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_012287914.1\|4218943_4219276_-	endoribonuclease MazF	NA	NA	NA	NA
WP_041539094.1\|4219275_4219518_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_012287916.1\|4219588_4220530_-	J domain-containing protein	E3T4P7	Cafeteria_roenbergensis_virus	2.0e-08	42.4
WP_012287917.1\|4220610_4224450_-	hypothetical protein	A0A0K1LLC1	Rhodobacter_phage	5.0e-223	38.5
WP_049771955.1\|4224461_4224854_-	peptidase P60	F4YXU4	Roseobacter_phage	4.5e-31	51.2
WP_012287919.1\|4225036_4225687_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	1.8e-29	41.9
WP_012287920.1\|4225686_4226319_-	DUF2460 domain-containing protein	A0A0B5A2K3	Paracoccus_phage	9.2e-42	43.8
WP_012287921.1\|4226607_4227066_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_012287923.1\|4227574_4228105_-	hypothetical protein	NA	NA	NA	NA
WP_012287924.1\|4228104_4228314_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_041539096.1\|4228300_4228594_-	gene transfer agent family protein	NA	NA	NA	NA
WP_012287926.1\|4228657_4229074_-\|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	4.6e-18	37.3
WP_012287929.1\|4230065_4231292_-\|capsid	phage major capsid protein	Q3HQT0	Burkholderia_phage	9.7e-80	42.5
WP_012287930.1\|4231458_4231878_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.5e-24	46.9
WP_012287931.1\|4232020_4232263_-	hypothetical protein	NA	NA	NA	NA
WP_012287932.1\|4232396_4233551_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	5.2e-67	42.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_010333

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2708 : 71916

Bacillus_phage(14.29%)

transposase,integrase

attL 57478:57512|attR 60788:60822

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012274972.1\|2708_3515_+\|integrase	tyrosine-type recombinase/integrase	A0A1L4BKH1	Thermus_phage	2.0e-09	31.1
WP_012274973.1\|3495_3990_-	hypothetical protein	NA	NA	NA	NA
WP_012274974.1\|4404_5673_-	cytochrome P450	NA	NA	NA	NA
WP_012274975.1\|5700_7359_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012274976.1\|7363_8974_-	acyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	4.6e-13	24.8
WP_012274977.1\|8985_10074_-	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_012274978.1\|10073_11282_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_012274979.1\|11331_11763_-	hypothetical protein	NA	NA	NA	NA
WP_012274980.1\|11768_12935_-	transporter	NA	NA	NA	NA
WP_041539919.1\|12991_14062_-	alcohol dehydrogenase catalytic domain-containing protein	A0A2L2DIY2	Acanthamoeba_polyphaga_mimivirus	3.6e-06	27.8
WP_012274982.1\|14232_14808_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_012274983.1\|14837_15689_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA
WP_012274984.1\|15697_17734_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012274985.1\|17756_18524_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012274986.1\|18538_18982_-	PaaI family thioesterase	NA	NA	NA	NA
WP_012274987.1\|19000_20143_-	nitronate monooxygenase	NA	NA	NA	NA
WP_012274988.1\|20192_21002_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_012274989.1\|21167_22025_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012274991.1\|22876_23230_-	response regulator	NA	NA	NA	NA
WP_150108225.1\|23375_23732_-	PilZ domain-containing protein	NA	NA	NA	NA
WP_012274993.1\|23832_24267_-	response regulator	W8CYM9	Bacillus_phage	9.5e-14	34.7
WP_012274994.1\|24253_27463_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.2e-43	30.7
WP_085953781.1\|27882_29062_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	7.7e-42	38.6
WP_012274997.1\|29528_29942_-	response regulator	NA	NA	NA	NA
WP_012274998.1\|29931_32643_-	response regulator	A0A1V0SGX0	Hokovirus	1.7e-39	33.6
WP_012274999.1\|32983_33238_-	hypothetical protein	NA	NA	NA	NA
WP_160164206.1\|34452_34599_-	hypothetical protein	NA	NA	NA	NA
WP_012275003.1\|35962_36910_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012275004.1\|37118_37520_+	hypothetical protein	NA	NA	NA	NA
WP_012275005.1\|37509_37761_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_041539897.1\|37894_39124_+	ATP-binding protein	NA	NA	NA	NA
WP_012275007.1\|39120_40083_-	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_012275008.1\|40136_42113_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_012275009.1\|42127_43624_-	MobA/MobL family protein	NA	NA	NA	NA
WP_012275010.1\|43883_44570_+	hypothetical protein	NA	NA	NA	NA
WP_150108238.1\|44566_45421_-	cell wall hydrolase	NA	NA	NA	NA
WP_012275012.1\|45468_46008_-	S26 family signal peptidase	NA	NA	NA	NA
WP_012275013.1\|46317_47349_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_012275014.1\|47361_48567_-	AAA family ATPase	A0A2I6B2X3	Macacine_betaherpesvirus	1.5e-48	32.7
WP_012275015.1\|48875_49841_-	replication initiator protein A	NA	NA	NA	NA
WP_012275016.1\|50087_50456_-	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	1.5e-12	40.4
WP_012275017.1\|51280_51502_-	hypothetical protein	NA	NA	NA	NA
WP_012275018.1\|52159_53092_-	DUF2493 domain-containing protein	NA	NA	NA	NA
WP_012275019.1\|53685_54027_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012275020.1\|54175_54508_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012275021.1\|54500_55748_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_012275022.1\|55854_56109_-	hypothetical protein	NA	NA	NA	NA
WP_150108227.1\|56252_56936_-	DNA repair protein RadC	NA	NA	NA	NA
WP_012275024.1\|57156_57561_-	hypothetical protein	A0A1V0EEV1	Caulobacter_phage	2.6e-18	51.2
57478:57512	attL	NA	NA	NA	NA
WP_012275025.1\|57563_58556_-\|integrase	site-specific integrase	A0A1P8DJ76	Virus_Rctr85	8.2e-13	32.9
WP_012275026.1\|58552_59494_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	3.2e-06	23.3
WP_012275027.1\|59490_60702_-\|integrase	tyrosine-type recombinase/integrase	A0A2K9VF00	Mycobacterium_phage	3.6e-10	28.9
WP_012275028.1\|60761_61424_-	DUF1738 domain-containing protein	NA	NA	NA	NA
60788:60822	attR	NA	NA	NA	NA
WP_012275029.1\|61572_65838_-	methylase	A0A076FMQ0	Aureococcus_anophage	7.6e-31	23.4
WP_012275030.1\|65980_66361_-	hypothetical protein	NA	NA	NA	NA
WP_012275031.1\|66367_66634_-	prevent-host-death protein	NA	NA	NA	NA
WP_012275033.1\|68978_69872_-	hypothetical protein	NA	NA	NA	NA
WP_150108239.1\|70324_70663_+	DUF736 family protein	NA	NA	NA	NA
WP_012275035.1\|70794_71916_+\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

97540 : 136584

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150108241.1\|97540_97870_+\|transposase	transposase	NA	NA	NA	NA
WP_012275062.1\|97866_98214_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.6e-30	57.5
WP_012275063.1\|98284_99973_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.8e-101	47.1
WP_150108232.1\|99988_100702_-	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_012275065.1\|101033_101603_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012275066.1\|101709_102090_+	VOC family protein	NA	NA	NA	NA
WP_012275067.1\|102129_102813_+	cupin	NA	NA	NA	NA
WP_049771998.1\|103515_105123_-	hypothetical protein	NA	NA	NA	NA
WP_083779820.1\|105479_105599_-	hypothetical protein	NA	NA	NA	NA
WP_012275071.1\|106915_109432_-	TonB-dependent receptor	NA	NA	NA	NA
WP_041539904.1\|110427_110928_+	Hsp20 family protein	NA	NA	NA	NA
WP_160164208.1\|110877_112287_-	hypothetical protein	E5EQ95	Micromonas_sp._RCC1109_virus	1.2e-25	28.5
WP_012275074.1\|113107_113836_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	6.9e-33	33.6
WP_041538967.1\|113822_115337_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	3.5e-23	29.9
WP_012275076.1\|115581_116364_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012275077.1\|117213_118074_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_041539906.1\|118539_118743_-	hypothetical protein	NA	NA	NA	NA
WP_012275078.1\|118759_120373_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_012275079.1\|120359_121334_-	HlyD family secretion protein	NA	NA	NA	NA
WP_012275080.1\|121487_121916_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012275081.1\|122145_122724_-	UPF0149 family protein	NA	NA	NA	NA
WP_012275082.1\|124363_124717_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	6.3e-16	43.3
WP_012275083.1\|124713_125055_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012275085.1\|125280_126039_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.5e-70	55.0
WP_012275086.1\|126059_127217_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.1e-72	33.7
WP_012275088.1\|128262_129072_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	8.4e-32	34.0
WP_012275089.1\|129068_129548_-\|transposase	transposase	NA	NA	NA	NA
WP_012275091.1\|129972_131364_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_012275092.1\|131363_132521_-	HlyD family secretion protein	NA	NA	NA	NA
WP_012275093.1\|132548_134270_-	MFS transporter	NA	NA	NA	NA
WP_150108234.1\|134266_134833_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_041539910.1\|135504_136584_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

156091 : 165675

Shigella_phage(28.57%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012275115.1\|156091_157720_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	1.4e-54	31.0
WP_041539912.1\|157831_158494_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_041539913.1\|158540_160184_+	long-chain-fatty-acid--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.5e-27	24.5
WP_012275118.1\|160650_161682_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.0e-45	34.5
WP_012275119.1\|161944_162256_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	5.9e-10	39.3
WP_012275120.1\|162252_162579_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	1.0e-12	44.7
WP_012275121.1\|162667_165115_-	DEAD/DEAH box helicase family protein	A0A2K9R7J3	Dishui_lake_phycodnavirus	4.8e-30	29.9
WP_012275122.1\|165120_165675_-	recombinase family protein	A0A1W5LU24	Ralstonia_phage	8.9e-25	49.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010338

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_010333

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection