CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010334	Shewanella halifaxensis HAW-EB4, complete sequence	8 crisprs	cas3,RT,csa3,cas2,PD-DExK,DEDDh,DinG	1	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010334_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010334_1

237391-237482

Orphan

Consensus_repeat	Method
TTTCCGTCTTAGCTTTCCCTAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010334_1

>merge|NC_010334|1|237391-237482|CRISPRCasFinder
TTTCCGTCTTAGCTTTCCCTAGGACCTATCTGTTGCTTTTCCTAGGACCTCGAACCTATCTTCTAATCCTTTCCGTCTTAGCTTTTCCTAGG

>NC_010334|1|1|237391-237482|CRISPRCasFinder
TTTCCGTCTTAGCTTTCCCTAGG	ACCTATCTGTTGCTTTTCCTAGGACCTCGAACCTATCTTCTAATCC
TTTCCGTCTTAGCTTTTCCTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010334.1\|WP_012275338.1\|246393_247107_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NC_010334.1\|WP_012275324.1\|226460_226937_-\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012275333.1\|238335_239733_+\|permease	unknown	unknown	gnl\|CDD\|281730
NC_010334.1\|WP_012275328.1\|230962_231610_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_010334.1\|WP_012275323.1\|224774_226130_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
NC_010334.1\|WP_012275332.1\|237547_238105_-\|phosphodiesterase	unknown	unknown	gnl\|CDD\|181869
NC_010334.1\|WP_012275336.1\|244720_245290_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NC_010334.1\|WP_190273635.1\|240033_241623_-\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|367668
NC_010334.1\|WP_012275326.1\|228202_230242_+\|oligopeptidase-A	unknown	unknown	gnl\|CDD\|182832
NC_010334.1\|WP_012275329.1\|231804_232494_+\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|225374
NC_010334.1\|WP_012275340.1\|248604_249483_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_010334.1\|WP_012275325.1\|227144_227927_-\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012275339.1\|247115_248498_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|236576
NC_010334.1\|WP_012275335.1\|242228_243848_-\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|367668
NC_010334.1\|WP_012275337.1\|245374_246397_+\|DUF3137-domain-containing-protein	unknown	unknown	gnl\|CDD\|378641
NC_010334.1\|WP_012275327.1\|230393_230966_+\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|372545
NC_010334.1\|WP_012275330.1\|232851_234003_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|184990
NC_010334.1\|WP_012275322.1\|222692_224645_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NC_010334.1\|WP_150102125.1\|249694_249934_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012275331.1\|234012_237171_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335

Protein	Function_ID	Function_description	E-value
NC_010334.1\|WP_012275338.1\|246393_247107_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.12288e-47
NC_010334.1\|WP_012275332.1\|237547_238105_-\|phosphodiesterase	gnl\|CDD\|181869	PRK09453, PRK09453, phosphodiesterase; Provisional.	8.41611e-103
NC_010334.1\|WP_012275333.1\|238335_239733_+\|permease	gnl\|CDD\|281730	pfam03773, ArsP_1, Predicted permease. This family of integral membrane proteins are predicted to be permeases of unknown specificity.	5.13746e-19
NC_010334.1\|WP_012275328.1\|230962_231610_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	1.57633e-20
NC_010334.1\|WP_012275323.1\|224774_226130_-\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NC_010334.1\|WP_012275336.1\|244720_245290_+\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	4.33237e-51
NC_010334.1\|WP_190273635.1\|240033_241623_-\|AbgT-family-transporter	gnl\|CDD\|367668	pfam03806, ABG_transport, AbgT putative transporter family.	0
NC_010334.1\|WP_012275326.1\|228202_230242_+\|oligopeptidase-A	gnl\|CDD\|182832	PRK10911, PRK10911, oligopeptidase A; Provisional.	0
NC_010334.1\|WP_012275329.1\|231804_232494_+\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|225374	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair].	4.23867e-27
NC_010334.1\|WP_012275339.1\|247115_248498_-\|MATE-family-efflux-transporter	gnl\|CDD\|236576	PRK09575, vmrA, MATE family efflux transporter.	0
NC_010334.1\|WP_012275340.1\|248604_249483_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.04849e-35
NC_010334.1\|WP_012275335.1\|242228_243848_-\|AbgT-family-transporter	gnl\|CDD\|367668	pfam03806, ABG_transport, AbgT putative transporter family.	0
NC_010334.1\|WP_012275337.1\|245374_246397_+\|DUF3137-domain-containing-protein	gnl\|CDD\|378641	pfam11335, DUF3137, Protein of unknown function (DUF3137). This bacterial family of proteins has no known function.	1.79542e-37
NC_010334.1\|WP_012275327.1\|230393_230966_+\|thioesterase-family-protein	gnl\|CDD\|372545	pfam13279, 4HBT_2, Thioesterase-like superfamily. This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.	4.30508e-27
NC_010334.1\|WP_012275330.1\|232851_234003_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|184990	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA.	1.03805e-113
NC_010334.1\|WP_012275322.1\|222692_224645_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NC_010334.1\|WP_012275331.1\|234012_237171_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0

>NC_010334.1|WP_012275331.1|234012_237171_+|efflux-RND-transporter-permease-subunit
MARFFIDRPIFAWVIAIIVMLAGVLSIVGLPVSQYPSIAPPSVVISAVYPGASAKTMEDSVTQVIEQRMTGLDNLRYISSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQLAMPLLPQEVQAQGVNVTKSSAGFLMVAAFVSEDGSLDKNDIADYVGSNIQDPLSRVPGVGTIELFGAQYAMRIWLDPLKLTQFNLTSQDVISSIREQNAQVSAGQLGGAPSLPGQELNATVSAQSRLQTAEQFQKIIIKADTSGAKVFLEDVARVELGAESYAVESFYNGKPAAGIGIQLATGANALATAEGVRAKIAELKPFFPEGMEVVYPYDTTPFVEKSIEGVVYTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILAVAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMQEEGLSPIEATKKSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVMVAIILTPALCATMLKPIAKGESHAKTGFFGWFNRKFDALTSRYEANVAAMIKRTGRTMMVYLAITVAVGWIFMRMPTAFLPDEDQGILFTQAILPVNSTQQETKQVLEQVSDYFLNDESANVKSVFSVSGYSFAGMGQNMGLAFVGLKDWSERSNPGQDVQSVANRAMAKFSQMKEAFVFAFVPPAVIELGTANGFDFYLQDKNGQGHEKLVEARNMLLGMAAQNPNLVGVRPNGQEDAPLYQVHIDHGKLRALGIDIESVNSVLGTAWGGNYVNDFIDRGRIKKVYVQGEAEYRMQPEDLDSWYVRNSKGEMVPFSAFASGTWGYGSPRLERFNGLPAMNIQGGTAPGYSTGAAMDDIEAMVKKLPPGFGIEWNGLSYEERLSGNQAPMLYALSIVVVFLVLAALYESWSVPFAVVLVVPLGIIGALIAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEYYEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGGMMSSTFMGIFFIPIFFVIVERMFSKRERDAARAVKAEAKAAKANK
>NC_010334.1|WP_012275330.1|232851_234003_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MRQIVKIASVLSVALWISGCEQKPEQGPQQRGPMEVGVITIAAKPQSIMVELPGRSKSYLEAEVRPQVSGIIMERGFVEGRDVEKGQSLYQIEPSTYEAALVSAKADLKSAQAGLVSAKAKALRFEKLVKLNSISEQDYDEADAAYKEALARVTVAEANINTAQINLEYTKVTAPISGRIGKSDVTAGALVTANQSQTLATIQQLDPMNIDIAQSSTQMLRLKSQLKRGQIEAAANANVELILEDGTPYHHTGVLQFAEVTVNENTGSVIIRAEFPNPDGVLMPGMYVRAVLNTGTDPEAILVPQKAITRNTKGQAVAMVIEDGKVAARIVTTAEVIDNQWRITSGLKVGEQLIVEGLQKIRPGAPVKAGPLAADKKPETQQK
>NC_010334.1|WP_012275329.1|231804_232494_+|DNA-3-methyladenine-glycosylase-I
MSKIESFAAIYARASQRKGGDQSLGSLLPTGLRSEEIEQFSDAVLLSEISKKVFQSGFVWRIVEANWPEYEKAFFGFEPFKVLMLSPEQLQDRASDPKLIRHLKKTMAIYDNAHMVNDLAGEHGSFAKFIADWPSEDITGLWAELKRKGARLGGNTGPYFLRSMGKDTFLLTADVQGYLKSHGLVDYGFSSKAGLKQVQSVFNHWQQESGRSLADISRVLACSVGDNRV
>NC_010334.1|WP_012275328.1|230962_231610_-|glutathione-S-transferase-family-protein
MDLYYHPLARQSQKTLIALYEKQASFNPHIIDLGDAFSRRSFQQLNAASKLPLLHVRAGESFNDASIIIEYIDNYISSGTQLIPIDKTQALYVRLYDRLSDNQLDREIDAWLQAVRSSNNQLYTKRLERAMLTSLEHFDRRLANNHWVCGESFSLADCAFIPCLKTLESRLQLLDYEHIGRYWIQAKLRGSVNQVIEEIELTLATTGQNEQVVHT
>NC_010334.1|WP_012275327.1|230393_230966_+|thioesterase-family-protein
MNLYFRLIWLFLWRKRHCNKIDFLGTSRLAYRALPTDCDINFHLTNSRYPAFMDLARTYMMAEMGFLKRFLTLGWMPIVNAAEFTYIRDIKPFAKFEIETKLVGWDEKYFYIEQRFVSERGLHCIAHVRGVFVCKRKQVAITTMLEEVGFNEPAPQLPPEVIKWKSFLQLKKECNLPSPTGEPIEFRAAS
>NC_010334.1|WP_012275326.1|228202_230242_+|oligopeptidase-A
MSNPLLSSAKLPPFSSIKPEHIQPAVEQGIADCRQKIEEVLKHQGEFTWDNLVAPLEETDDLLGKIWSPISHMNSVVSNEEWRKAHDACLPLLSEYGTFVGQHQGLYQAYKSLAESAEFAHYSQAQKKLIENSLRDFELSGIGLSDSDKLRYGELVKRMSELTSNFSNQLLDATQAWTKLITDEADLKGLPESATAAAKAMAESKELDGWLFTLDIPSYLPVMMYSENRELREECYRAFITRASDQGPNAGEFDNGPLMDEILVLRHELANLLGFDSFSHKSLATKMAESPAQVLDFLTELAARSKSQGETELAELKEFAEKECGVTELEPWDLSFYAEKLKHHRYEISQELLRPYFPEDKVLSGLFYTVSRLFGLKVEEQKEFDSYHKDVRFFHITDSNNEHRGSFYLDLYAREGKRGGAWMDDCRARRMTENGLQDPVAYLTCNFNAPVAGKPALFTHDEVTTLFHEFGHGIHHMLTKIDVGGVSGISGVPWDAVELPSQFMENWCYEEEALAEISGHYETGEPLPKAMLDKMLAAKNFQSGMMMLRQLEFSLFDFKMHLEFDPAKGAEIQQKLDEVRQEVAVIEAAEFNRFQHSFAHIFAGGYAAGYYSYKWAEVLSADAFSLFEEQGIFNAETGQRFLENILEMGGSEEPMELFKRFRGREPQTDALLRHSGING
>NC_010334.1|WP_012275325.1|227144_227927_-|hypothetical-protein
MNKTSLYTALVTLLISPLAFADDAVSIDDSHTIKVIEQLPSDDSGQVQGLIDLGWDSKYISEGRNNLEKGGIYWATAAVQKDNFNIYATVGRGDSQHYTEWNFGIEYGFDLSENLSGSIGYQRLEFYGDERAYDNELFSSLEYTAVDWLVPSVSYTYSTEAAGYFVEVSLHSNWELADGLSVSPYVTQGFDFQYVTEDHDGPNHFQFGVEAEYLLPNNFVVSGHISHTIAQEDIKLEARNDGITGSLDETFAGLHLSWNF
>NC_010334.1|WP_012275324.1|226460_226937_-|hypothetical-protein
MLLLLRLVIGMFVIFYSQSCFSSDPDTSSLVLGSVLNDKGQPIEIPSKPQSDFNYSPPTIEESKRSSTQARVAKKSPPKKDKSRKQQLASRNSVANDPGCRWLNGRMNSLERHLSAGVNSRNRHYQTELNIRQDEWQCMKCGAEGPKQSDHASCQYRR
>NC_010334.1|WP_012275323.1|224774_226130_-|glutathione-disulfide-reductase
MAQHFDYICLGAGSGGIASANRAAMRGAKVLLIEAKELGGTCVNVGCVPKKVMWYGAQVAEAMHLYAKDYGFDVTVNKFDWSTLVASREAYIDRIHGSYDRGLESNGVTLVRGYGRFVDSSTIEVNGEHYSADNILIATGGAATIPNIPGAEHGIDSDGFFALAEQPKRVAVIGAGYIAVEVAGVLQALGSDTHLFVRKHAPLRNFDPMLSEALMESMATDGPTLHTHSVPESVTKNSDGSLTLKIENGESYDIDCLIWAIGRQPSTANIGLENTKVKLDEKGYVITDEQQNTTDTGIYCVGDIMAGGVELTPVAVKAGRLLSERLFNGMTDAKMDYSCIPTVVFSHPAIGTMGLTEPEAKAEYGEDNVTVYTSGFTSMYTAVTAHRQACKMKLICAGDNQKVVGIHGIGYGMDEILQGFGVAMKMGATKADFDAVVAIHPTGSEEFVTMR
>NC_010334.1|WP_012275322.1|222692_224645_+|BCCT-family-transporter
MKKHFELIDKPTFFGALLLLCAVVIPLLLFPAEGAEWIAVAKTFMTDKLGFAYLGLGLAAFFFMIYIVFSDIGQIKLGDPDEKPEFALASWAAMLFCGGIGASILYWGTIEWAYYYQNPPFQLEAGSEEAVRWAATYGLFHWGPIAWCIYMIPAIPIAYFFYVRKQPVLKVSAALMPVIGEANSFGKLGKVIDILFIFGLLGGAATTLGLAAPLINEGISYLFGIPATTGSQILVLMVCTAIFAYSSYMGMDKGIKILSNINFWGALGLLLFVLVCGPTIFMLETGLDSIGRMLSNFFVMATWAEPFGGMGTFEDTHFPQDWTIFYWAWWLVFAPSMGLFVARISRGRTIKQMVSGAVFFGSLGCSMYFIILGNYGLSLQLSGQLDVVSILNAEGATRAIFAILETLPFSTLIIALFTLLCVIFTATTFDSISYILASVVQTNVTEDPMRWNRLFWAFTLSFMPSALMFMGGLATLQTAAIVGGLPLLIIAVMLMISGVKAAMLDLSHQDNYVDPVINISDLPDVDPWSKEGQALARFEALRDKAINAADLEREANDAIWMLKKQLRREALARGESSVELGDAPDEIIEQLRQLTDDSMKAKEAKLAASELAQEARVAFDALMRDKEQEEALLAQEEVKLAIQARLNTPN
>NC_010334.1|WP_012275332.1|237547_238105_-|phosphodiesterase
MKLFIASDLHGSLSATKAMLTRFEQSGARYLILLGDLLNHGPRNAIPEGYDPVALSETLNAYADKIIAVRGNCDSEVDQMLLQFPITETYAQILMPQMRLFLTHGHVYSPDKLPPLQAGDGLLYGHTHIAVAEYRDDILLFNPGSTTIPRNDSRASYGLITDTECQIRALDNDELLLSCPIRHRL
>NC_010334.1|WP_012275333.1|238335_239733_+|permease
MIQSLFELIWHVLSTLSGMVWQIYWPLAFGLMLSSVLRNILPLDVVVKHLGKTNGRSLVLTTLLGMVSSSCSYAAASMSKTLLIKHATLANSMAFLVASTNLILEMFIVLVSLLGWQFLWGEISGGLLLVVIVGFIFRFYPKAQSRALRDKLQSEEKGASTEMKCGAAMPGMAKATTNPAPSSNSHKNDVEMKCGADMAGMAKAPSDPAPNSNSHKNDAEMKCGADMAGMAKAPSDPAPNSNSHKSDAEMKCGAGKCGADMSGSDSAQNKTTESHYMDKVRRSAGYFYMDLGMIGKDIIIGVVISSVLIALVPADWWRELFISSQVNLPAWLHSLLDVLVGIFVAVIAYVCSVGNLLLAAALWHGGISFGGVIGFILADVLTIPMLGVYAKYYGAKPARWIGALLFLSILATGIIIDLIYMNVDWSASKETIRTLHQSGFGWNFTTVMNVIFIPLSIWYYRLGKS
>NC_010334.1|WP_190273635.1|240033_241623_-|AbgT-family-transporter
MSSDASSDPNNQPSGWFVRFLNVVERLGNLLPHPITLFVIFCAAVIVISGIAGYFELSVVDPRPEGASGRSSDGMIHVVSLMNAEGLRMIVSNLVTNFTGFTPLGTVLVALLGVGIADRSGLLSAAMRSLVMGTSKRLVTLTIVFAGIVSNTAAELGYVVLIPMAAMIFHSLGRHPLAGLAAAFAGVSGGYSANLLLGTVDPLLSGITEAAAQMIDPDYTVGPEANWYFMFVSTFLITFLGAFVTEKIVEPKLGKYDPSEAASDLGEQKMDGVSAIEKQGLKAAGLAVLVMSVLLALTVVPEGAPLRNPETGLVSGSPFLKGIVAFIFICFAIPGLVYGRIVGTMKRDVDVINAMSHSMSSMGMYIVLVFFASQFVAFFTWTNLGSVLAVAGADALNAIGLTGPLVFVVFIAMCGFINLMLGSASAQWAVTAPVFVPMLMLVGYAPETIQAAYRIGDSVTNLITPMMSYFGLILAVASQYKKNLGIGTLIATMLPYTIVFFIGWTSFFFIWVFGFGLPVGPGSATYYTP
>NC_010334.1|WP_012275335.1|242228_243848_-|AbgT-family-transporter
MSSNDGDSLPLSSQAPLEPSNKPNGWFVRFLNGVERLGNLLPHPITLFALFCAAVVVISGIAGYFELTVVDPRPEGASGRSSDGLIHVVSLMNAEGLRMIVSNLVTNFTGFTPLGTVLVALLGVGIADRSGLLSAAMRLLVMGASKRLVTLTLVFAGIVSNTASELGYVVLIPMAAMIFHSLGRHPLAGLAAAFAGVSGGYSANLLLGTVDPLLSGITEAAAQMIDPDYLVGPEVNWYFMFVSTFLITFLGALVTEKIVEPKLGKYDVSEAATDLSQQKMDSVSALEKKGLKIAGLTILVMSAVLALTIIPEGAPLRNQETGLVAGSPFLKGIVAFIFICFAIPGLVYGRIVGTMKRDIDVINAMSSSMSSMGMYIVLVFFASQFVAFFKWTNLGAVLAVSGADALNAVGLTGPLVFVLFIMMCGFINLMLGSASAQWAVTAPIFVPMLMLVGYAPETIQAAYRIGDSVTNLITPMMSYFGLILAVASQYKKNLGIGTLVATMLPYSIVFFIGWTCFFFLWVFVIGLPVGPGAATYYTP
>NC_010334.1|WP_012275336.1|244720_245290_+|LemA-family-protein
MEGILLGSGLVVIIAYLWYVSLIKKRNTGREALSGIDVQLKKRSNLVPNILKIAQKYMDHEKSLLTEITELRTLATKGYDSVDPAAVKTHLEVSEKLNQKMSQLMVSVESYPELKSDNTMLQAMQTYNEVEAQLSAARRFYNAAVSELNTAVEIFPGSIIASIANVKVMPFYEADEASKAPVNATDYLR
>NC_010334.1|WP_012275337.1|245374_246397_+|DUF3137-domain-containing-protein
MNIFSFLFGAPIKPIRNSNNLTAAPNELAEFKLYYQQYLEPLTSKFESARVASLKSCRQRLYLCSAIYLGIVALAFMFTPYLNISDPMIIYLIGLVVLALPFAWWVFNPIKHYKADVKQRIYPLIFKYFGHDFIFCREHKMSLATLKASKLLPYYDAANFDDYVQGTYKSIEIAINELHLTKQVKREKNTNTVTVFKGVMIELSNHKDFRGHTVVVKSRGGLVNFLSDSFKGLERVKLEDPIFEKQFDVFSTDQIEARYLLTVTFMERLQELSASFGNKIQCAFYRNKLLIMLGSKDNRFEMTSIFKAATFEYEFSQINKEMKQLFAIVDVLQLERTTGL
>NC_010334.1|WP_012275338.1|246393_247107_+|lytic-transglycosylase-domain-containing-protein
MMKQGVLIGLLLTSVAAIAETDKPHFVAKPSSKSVLGKTVSNNDKHNTSPSTGVTLQQGEKVYHYLSADGGLVFSDHAPQQGHYQVLLFDCYACKPQSNINWNTIPLFTAQYQQQIAMAARAYRLEPALIRAVIHAESAFKSTAVSKTGAQGLMQLMPATAGELGVSDAFHPEQNILAGSRYLALLLKRFDGDIALACAAYNAGASRVEQYNGVPPYPETQAYVERVQILLKRYRRT
>NC_010334.1|WP_012275339.1|247115_248498_-|MATE-family-efflux-transporter
MLAQSIENNSNDSISRTFWRYTLPAIAAMLVNGLYQIVDGIFIGHYIGYEGLAAINMAWPVIYFMVGFGIMIGMGSGSLLSIQRGKGDTSAAPTILTTSLLSMLALAVASSAILSILSTFFLEAQGGAGTTLVMAQDYISVFSWGTAITIIASALPLLIRNDESPNIATGLMVLGAFINIALDYLLIGVFEFGLLGAAIATITAQLTVCILGLVYFCSRISNISWPSKFRYFNASFAKQIVLLGSSSLFMYLYTSFVFALHNRLFIEYGTPLTVGAFAIVGYLMVLYYLVSEGIAEGLQPPVSYYYGAEQHANINKMLKLSIKVTLIAGTSWILLLNAIPETMVKLFNSSDSELIATAVDGIRMHLFAMPLDGFIVLSSVYFMATNQGVKALVIACGNMLIQLPFLMILPKFFGVDGVWMAMPISNIALCLIVVPLVWLDVKARARKFGPTTTEAVIATA
>NC_010334.1|WP_012275340.1|248604_249483_+|LysR-family-transcriptional-regulator
MNWTLDELSAFVNSVKLGSFSAAARKMGKAQSRISTAISNLEAGLGFELFDRSAKLPVLTPLGEEMFIEAQSVLAQCQRLNARAMTVTSGEEVVLTVAMDEAVPVNAFEALFQRISSKFPLLKLTIINGSQEDIAIWVDEGLADIGIMFHATLLLPDSLEFMSIGQFKQSLVVAPSHPLAAVSAPTLEQLMQYRQLAICDRAGHSNTKPLSANYWYIDSYYYIVALVLQGVGWALVPEHVAKSEWYIDDLASLSTEYITEPLLVEMGVVNRRDKQIGPVMHWLFDELHSVLS
>NC_010334.1|WP_150102125.1|249694_249934_+|hypothetical-protein
MLLALLALNSMACSSTTVANAGCDFVSGAHRNEQQREQREQIGQSSVASTQDNKDVEVGILNAILGVFSRQLNDDTECL

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Crispr_ID: NC_010334_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010334_2

393183-393255

Orphan

Consensus_repeat	Method
CTAGTACCTTGTTTATTCAGTCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010334_2

>merge|NC_010334|2|393183-393255|CRISPRCasFinder
CTAGTACCTTGTTTATTCAGTCCGTCCTCGCAGCGCAGCGTCCTAGGATCTAGTACCTTGTTTATTAAGTCCG

>NC_010334|2|2|393183-393255|CRISPRCasFinder
CTAGTACCTTGTTTATTCAGTCCG	TCCTCGCAGCGCAGCGTCCTAGGAT
CTAGTACCTTGTTTATTAAGTCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010334.1\|WP_012275457.1\|387340_388234_-\|YjjW-family-glycine-radical-enzyme-activase	unknown	unknown	gnl\|CDD\|274938
NC_010334.1\|WP_012275461.1\|393274_394207_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NC_010334.1\|WP_012275463.1\|396252_396606_+\|cytochrome-c3-family-protein	unknown	unknown	gnl\|CDD\|373118
NC_010334.1\|WP_012275468.1\|401248_402619_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236532
NC_010334.1\|WP_012275455.1\|384810_385155_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012275467.1\|400586_401234_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NC_010334.1\|WP_012275462.1\|394703_396224_+\|flavocytochrome-c	unknown	unknown	gnl\|CDD\|273816
NC_010334.1\|WP_012275453.1\|382087_383020_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176109
NC_010334.1\|WP_012275470.1\|403531_404014_+\|Spy/CpxP-family-protein-refolding-chaperone	unknown	unknown	gnl\|CDD\|197366
NC_010334.1\|WP_012275464.1\|396868_398113_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380419
NC_010334.1\|WP_012275466.1\|399577_400465_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_010334.1\|WP_012275458.1\|388290_389814_-\|YjjI-family-glycine-radical-enzyme	unknown	unknown	gnl\|CDD\|182879
NC_010334.1\|WP_012275465.1\|398329_399439_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012275469.1\|402619_403303_-\|response-regulator	unknown	unknown	gnl\|CDD\|182864
NC_010334.1\|WP_041415790.1\|384485_384707_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012275460.1\|391884_392865_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|176248
NC_010334.1\|WP_012275456.1\|386671_386920_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012275454.1\|383623_384397_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012275459.1\|390067_391588_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143434
NC_010334.1\|WP_012275452.1\|381410_381872_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	unknown	unknown	gnl\|CDD\|349967

Protein	Function_ID	Function_description	E-value
NC_010334.1\|WP_012275457.1\|387340_388234_-\|YjjW-family-glycine-radical-enzyme-activase	gnl\|CDD\|274938	TIGR04041, glycine_radical_enzyme_activase_YjjW_family, glycine radical enzyme activase, YjjW family. Members of this family are radical SAM enzymes, designated YjjW in E. coli, that are paired with and appear to activate a glycyl radical enzyme of unknown function, designated YjjI. This activase and its target are found in Clostridial species as well as E. coli and cousins. Members of this family may be misannotated as pyruvate formate lyase activating enzyme. [Protein fate, Protein modification and repair].	1.17076e-169
NC_010334.1\|WP_012275461.1\|393274_394207_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.69976e-49
NC_010334.1\|WP_012275466.1\|399577_400465_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.85923e-38
NC_010334.1\|WP_012275468.1\|401248_402619_-\|HAMP-domain-containing-protein	gnl\|CDD\|236532	PRK09470, cpxA, envelope stress sensor histidine kinase CpxA.	3.24351e-108
NC_010334.1\|WP_012275462.1\|394703_396224_+\|flavocytochrome-c	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	1.65958e-163
NC_010334.1\|WP_012275453.1\|382087_383020_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176109	cd08417, PBP2_Nitroaromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of dinitrotoluene and similar compounds, such as DntR, NahR, and LinR. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. Also included are related LysR-type regulators clustered together in phylogenetic trees, including NodD, ToxR, LeuO, SyrM, TdcA, and PnbR. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.67833e-42
NC_010334.1\|WP_012275470.1\|403531_404014_+\|Spy/CpxP-family-protein-refolding-chaperone	gnl\|CDD\|197366	cd09916, CpxP_like, CpxP component of the bacterial Cpx-two-component system and related proteins. This family summarizes bacterial proteins related to CpxP, a periplasmic protein that forms part of a two-component system which acts as a global modulator of cell-envelope stress in gram-negative bacteria. CpxP aids in combating extracytoplasmic protein-mediated toxicity, and may also be involved in the response to alkaline pH. Functioning as a dimer, it inhibits activation of the kinase CpxA, but also plays a vital role in the quality control system of P pili. It has been suggested that CpxP directly interacts with CpxA via its concave polar surface. Another member of this family, Spy, is also a periplasmic protein that may be involved in the response to stress. The homology between CpxP and Spy suggests similar functions. A characteristic 5-residue sequence motif LTXXQ is found repeated twice in many members of this family.	1.24966e-19
NC_010334.1\|WP_012275464.1\|396868_398113_+\|hypothetical-protein	gnl\|CDD\|380419	cd20283, cupin_DddY, dimethylsulfoniopropionate lyase DddY, cupin domain. This family includes dimethylsulfoniopropionate (DMSP) lyase DddY, the only known periplasmic DMSP lyase that is present in certain proteobacteria. DddY cleaves dimethylsulfoniopropionate (DMSP), the organic osmolyte and antioxidant produced in marine environments, and yields acrylate and the climate-active gas dimethyl sulfide (DMS). The catabolism of DMSP by microbial organisms provides a major source of carbon and sulfur in the marine environment. Studies show that DddY binds a zinc ion as cofactor, and uses a key tyrosine as a general base to attack DMSP. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	0
NC_010334.1\|WP_012275458.1\|388290_389814_-\|YjjI-family-glycine-radical-enzyme	gnl\|CDD\|182879	PRK10977, PRK10977, hypothetical protein; Provisional.	0
NC_010334.1\|WP_012275463.1\|396252_396606_+\|cytochrome-c3-family-protein	gnl\|CDD\|373118	pfam14537, Cytochrom_c3_2, Cytochrome c3.	1.98522e-10
NC_010334.1\|WP_012275469.1\|402619_403303_-\|response-regulator	gnl\|CDD\|182864	PRK10955, PRK10955, envelope stress response regulator transcription factor CpxR.	1.79662e-92
NC_010334.1\|WP_012275460.1\|391884_392865_+\|oxidoreductase	gnl\|CDD\|176248	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0
NC_010334.1\|WP_012275467.1\|400586_401234_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	0.00523313
NC_010334.1\|WP_012275459.1\|390067_391588_-\|aldehyde-dehydrogenase	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NC_010334.1\|WP_012275452.1\|381410_381872_-\|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL	gnl\|CDD\|349967	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL. tRNA (Um34/Cm34) methyltransferase TrmL catalyzes the methyl transfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH at position 34 in both tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.47641e-88

>NC_010334.1|WP_012275460.1|391884_392865_+|oxidoreductase
MFNALVLTQEEKLTHANVCQISETDLPEGEVLVDVACSSLNYKDGLAVTGVGRIIRNFPMVPGIDFAGTVLESSDERYKVGDKVILTGWGVGENHWGGLAERARVKADWLVPMPTNCDAAKAMQIGTAGLTAMLCVQALQQAGIKPEDGDVLVTGASGGVGSVAVTLLAQLGYRVVASSGRALQNGALLTKLGASEVIDRSELEVDSRPLEKQRWAGVVDTVGNKVLATALAQMNYGGAAAICGLAGGFALPTTVMPFILRGVNLLGIDSVACPFEKRQAAWEQVLNLLPASYFEDACETIALEQVPEFAQRIIKGQVTGRVLVQL
>NC_010334.1|WP_012275459.1|390067_391588_-|aldehyde-dehydrogenase
MIYSKPGTADALINFKPQYQNFIGGEWVKPVNDLYFDNTSPVDGQVFCQVPRSGSVDIELALDAAHEAKDSWGKTSVTERANILLRIADRIEQNIEPLAIAETWDNGKAVRETLVADLPLVVDHFRYFAGCIRAQEGSAADIDANTVSYHFPEPLGVVGQIIPWNFPLLMAAWKIAPALAAGNCIVLKPAEQTPASILVLLELIEDLLPKGVLNVVNGFGTEAGQALATSSRINKLAFTGSTQVGQHILKCAAESLIPSTVELGGKSPNIYFADVMDHEDEYLDKAVEGMLLAFFNQGEVCTCPSRALIHESIYDKFIAKVIQRAKTIKQSNPLDTDTQVGAQASQEQFDKILSYLDIGKDEGAEVLIGGNICKLEGEQSQGFYITPTILKGTNDMRIFQEEIFGPVISVTTFKDEAEALAIANDTEYGLGAGVWTRDMNTAQRMGRGIQAGRVWINCYHAYPAHAAFGGYKKSGIGRETHKMMLDHYQNTKNLLISYDANPLGFF
>NC_010334.1|WP_012275458.1|388290_389814_-|YjjI-family-glycine-radical-enzyme
MTLQHRITQITRDPNLSPKQKSNFLALEAEASLPYMALSDAVTEAKESGIICDMFEGNAPFKPRYVLPDYAKFLQNGSEYLELSPVQDLDEALNALTIIYHHVPSVTNIPVYLGQLDDILLPFCQGLDPETIYRKLKLFWIMLDRTLPDAFMHVNIGPTDNIVCRTILRVDAELKQIAPNLTFMYDPQITPDELLQIAASNICECSKPHIANYPLHANSFDEKGFGIVSCYNSLPLAGGANTLVRINLKEVALKASSVDDFFNQVLPHYCQLTYELIEARAKFLHEESNFFNSFLVKEGLIEESRFAPMFGIYGMAEAVNILLGTPSNHYGHNAAANELGHKISKALDAIVKSTPVKYGYHGLALLHSQGGMNVDKDVTPGVRIPYGTEPNPIVHIQALAEHHQYYTSGISDILTIDETVKANPLAMMQLCKGALSLGFREFSANVASNDLIRVTGYMIKLSDIASFKQAGSRTNTTWLGAEAAVNTKILERQPRVIAHEQSPTHAK
>NC_010334.1|WP_012275457.1|387340_388234_-|YjjW-family-glycine-radical-enzyme-activase
MVRVATVNQIIPFSCVDGPGSRLVIFLQGCNFNCKNCHNPHTIDMCDSCGDCVATCPVGALSLSLSEVTEAVITKPRVLWDSDKCTQCDTCLSTCPKQSSPKTRQYSVPQMLELIRSQVHFINGITVSGGEATLQLPFIIELFQAIKASPDLKHLSCMIDSNGYLSESGWEQVMPYLDGAMIDLKSWQQHTHHYITGRDNHRVFISLKLLAAEGKLYEIRLLYIPRVSDFDNEINAVAGYLSQLPASVRVKLNAFQHHGVTGEARQWGTCSEQQMQQLAAQLSQRGVRNLVLPNVYL
>NC_010334.1|WP_012275456.1|386671_386920_+|hypothetical-protein
MAKNSKRTTKQLASTAAKFLSDANSSKIKKHLSGSVLAQSRTTKQTGKKMESELSAILKSSKYDKDTKMLAASLLSQSNSSR
>NC_010334.1|WP_012275455.1|384810_385155_+|hypothetical-protein
MSNDDDLMRMRLGALDSIDALNKDIYDDSDWKMGVLWFSALAPTSRTGHAERHGVVYTTEEARLFYSKNDNPKNCLCSLSPTLVNVKTGEVLQTELVEKMLFAKKTFMKSVLIE
>NC_010334.1|WP_041415790.1|384485_384707_+|hypothetical-protein
MKRKQCGRTMELIVLEQYFIKNEIEKLEVECLCSINSRDISQNTLRILKLKRELQEMLDLEIYTSGITTLYDD
>NC_010334.1|WP_012275454.1|383623_384397_+|hypothetical-protein
MDEIVELGLSLVDKYQHAGIFRKSCRIPNNIFGSADYLALVAYPSIRSDEKRSNFKDAMLSALLKESCKTRGIRKADKTMLAQRLGLSKDMIWRDIDRAITGGTKKDGGGTKKLIDRFHSYHVFRAYDSALSDDANLTFEQVLGEISTAYESQQSKVSDSETRIENLKRTFRQSRPVLHLTWGLVESFKLKGWATDTGQLCYGVKPAIHDPSWLPEALDLAKIVLGLQLVEYESAKLNGKRLRSHKFDPQEIIYIHF
>NC_010334.1|WP_012275453.1|382087_383020_+|LysR-family-transcriptional-regulator
MDLAKLSRISMKHLITLHVMLDTLSVTASAERLCLSPSSVSKTLSQLRLSLDDELFYRHGNKLVATPLARRLGPSVHQIINDMNQLMTKEAFNPADYEGRFSLAMRESTFELLAVKFMAHVLTLAPNIRLDIFAKDSVGFEGLVKGSLDFILLPHDRSQPPISLHELVWETLINDEMVCLMKPAHPLATQAQISIEDYLSFSHIGISDADLNTPFFEMQLAQRARNRAVPISVADFGSAALLCYHSDLLFTCSRRWAETALQAQGLVTKALPLDYGEVAYSLVWHKQSMNDPALRWLYQQLVEFTQMEFQ
>NC_010334.1|WP_012275452.1|381410_381872_-|tRNA-(uridine(34)/cytosine(34)/5--carboxymethylaminomethyluridine(34)-2'-O)--methyltransferase-TrmL
MFHIALYEPEIAPNTGNIIRLIANNGCKLHLIEPLGFDLEDKKLRRAGLDYADLANVTHHKNFEAFLEAMDGKRIMACTTKGSRPHSELTFKQDDVLLFGPESRGLPADIIDSIPTEQRLRIPMMSTSRSLNLSNAVAIISYEAWRQLDYAGM
>NC_010334.1|WP_012275461.1|393274_394207_-|LysR-family-transcriptional-regulator
MELEEIYRQDLSLLIALQILVEERSVTQAAKRLHLSQSATSRILARLREMLDDPLFSRVGQQLVPTSFALECYQQLRQPTGQLIELLTPKAFVPEECQQQFSIAVTDYAMQALVPFILPHIYQKAPQIRLEIVPVQQKELQAQLSVKGADMAICRAIGQTGNLQHSFLGKVGVSCLLSPNHPLADSDISLEDYLHYPHATIAISDGVKALLDDAISQYPPRTELLRTPHLDTALALQSINPLIITLPEGMAAIAAERHCLRVKPLPFKLQSLDYNLFWHSRCEQDKAQKWLRNEIIEATQSLLTQTPQNL
>NC_010334.1|WP_012275462.1|394703_396224_+|flavocytochrome-c
MSNNNLLGRRNFIKGMGAAAGVAMAAPALAISEKADGVKWDQQVEVLIIGSGFAGLAAAIEATRKGAKDVHIYEKMSYFGGNSAINGGLFAAPDTPMQKTEGVKDSVDTMVADQLAAGRGIADEALLRHVAEHAVEALQMTLDAGSEYHPYLQQLGGHSVARTYQTTVSCGAGITQPLLQECRKLGVHTHNRAKFEGFLVGDKGEVVGVKMRQNYHFGEDQPGEVINIRAKRGVIMATGGFAQNVNLRMAQDPTLTAEVGCTNAPGATGEGMYEMFRLGAIPVHLAHIQSGPWASPDEGGFGYVSNYSIYNFPHSVAIDRLTGKRFMNEIADRKTRADAELNCRDAQGNALPPILITSYKDSKKHPNTKKVIKYNVGWKFDSVEALAKHFDVPLAPLKAQIAEYNEYVKAQNDPQFGKNMTEAKDKYIEAPFTVVRLWPKVHYCQGGVQINTNAEVKDSFTGQAIPGLYAAGEVCGGIHGVSRLGSCSIPECMVMGMTAARSMMKA
>NC_010334.1|WP_012275463.1|396252_396606_+|cytochrome-c3-family-protein
MINLKAVLALTFGCFLSLSAQAVEIRDHHKEVIGKDCKTCHDNGIKQFPSDQACLQCHDVDDLAEQTARSEEDKWQNPHDNLHYGKELPCQECHSEHDTKKPLCSNCHTFKYDKHKE
>NC_010334.1|WP_012275464.1|396868_398113_+|hypothetical-protein
MKYTMLLGSLLLSNGLVAAELPDFLDKKDINDAQFQCLGESPNYNAQDQKYIDILWDETLTYLRAYAEALTNDQNSGCLNSDMAMVDSTEGGQHMCVMDRRDMKLMVKNIYQVINNADEAKKCFGAREDVSWIYNPGGELTENSPVAQHFKRTTFEEFFDNKVTDKQVKKHGENFTNNFYKMVTGDEVKMPAVFPYDISANSLPNLWAAAGWFPMYAEEGKRNDKNFDNIRGGYAYAEIFGHWGLLRIDEINGEKVGAEVGMTVQSVDTLYPFHNHAISEMYYNMRVPACTNQFKTIAVREDSPLVKTVKEDDTMRRVQFDEGQHNSQTMWLSGSAEQDSLIYFHQNTIHAFDVDGSCETKPEERAIVSVWARSNANDKRNDYGTTLLCESAANPGTPAKRGEVIQCDLTKVKW
>NC_010334.1|WP_012275465.1|398329_399439_+|hypothetical-protein
MKKSIINLAVASILLPVFAAPAVADDLNIGGSVRANYSYSDYSESSKDKGGDFDFNLVSITFADKWNDIGVKAEYRFYDGYDHLKYGYAFWDVNEDLTINGGAISKPFGNKGYASHNWWYSLNYYMGFEDDYGVGVSAQYENGISLSEFAFIKNAIYGGTDHRDFAGTVAKGTVGDTSYNNEETNTLAGRQSFTLTNGELTTIVGASVEYGQLYNSEYGENGDTFNYALHLDMNYAGWGLQAQYLAYDFDQYDDGKIDPDKIGMGMLGGFYEVASKGNIYTANLSKNIATSWGSLTVYNDFSMVQPDVEEFDDSILNTTGVSIAYGPLFIYVDHYMAKNVLWLGGNSLGLVQTDDDWDHRFNINFAYYF
>NC_010334.1|WP_012275466.1|399577_400465_-|LysR-family-transcriptional-regulator
MLKIELLESFIAVVECGNLSKAAEKLCRTQSTISLQIKKLEESVGKPLLLRDNKGVTMTDAGKTLLNYAYKMLQLSSQAIDELKDCQNREVIRLGVPTDYINRYLGSFLLEFIREFTCIELVIDTDVSGNLYKRLHNGEFDVIVATHWQTPAAGHGELLFERRFHWVAAKGGSAHKRETVPMALYPENCPIRAQVFANHQISMRPMSVLLSTPSPTAMCMAVENDLVIAPIAEFRINDKMQIIDPIEHNIPPLPSFNESLYINPETQTAATNQLINLIKANVQGLGEVNKAQMLG
>NC_010334.1|WP_012275467.1|400586_401234_+|TetR/AcrR-family-transcriptional-regulator
MSNWQQRESYLTDIAERCLRGHKSFDLRRSHLVEASQISKGTIYNHFPTEADLVVAVATAHYRKRLERAAIDDDLYQDYLTRFLMHHCWGLRDDLLYDRFIISRVMPNSELLAQVTDDNRETFEQVYGEYVRWNNDLIKAIGVVEGFNRAELVANYLRGALINCDDAGKQYTDASLYYQFSYALAQLMGHSDKRIPKQADYAHWLARLEPAANAA
>NC_010334.1|WP_012275468.1|401248_402619_-|HAMP-domain-containing-protein
MQLRKNPNNIFVKLLLGFWLCSSLIITLVGLLPLLQQNHDQSELPPQLKHLLETVSQKIINNPQVLNNDKMKRWDRFKEFNGRPIRIYLVDENANVLNTHKPSRTLRRFMLIADEAGKPIKQQFRNELMFGPYSFHVEGKEYSLYGRIPEHHSRPWFFFFSDNKILTLSIAILLSGLLCGLFAWHLGKPLRSLKRSADALAGGDLSSRVDMATALRNDEIGQLAQAFNSMADSVEDMVNSQQRLISDISHELRTPLTRLKLSLALSRKKGQETAETERIEYEADQLEQMIAELLELSRVKLNANETKRNLELSETLSQVLDDADFEAQQQQKQLHIDIDESIVAPLYPRPLCRAVENLLRNAIRYANSQVSIQAIATASNIQIEIIDDGPGIADETDLEAIFEPFYRPQSARDRESGGWGLGLAIARAAIQAHQGKITAENNQHSGLKITINLPIQ
>NC_010334.1|WP_012275469.1|402619_403303_-|response-regulator
MSRILLIDDDLGLSELLAQLLELEGFELTLAHDGQSGLDLAIEQQFDLILLDVMLPKLNGFEVLRALRSKKQTPVLMLTARGDEIDRVVGLEIGADDYLPKPFNDRELVARIRAIIRRTHSQANETPLSTRQYGDINLDPARQEVHCQDQLIILTGTEFSLLFELVKSAGELASKEVLSEKVLGKKLMPFDRSLDMHLSNLRKKMPERDDGRPRVKTIRGKGYIWLP
>NC_010334.1|WP_012275470.1|403531_404014_+|Spy/CpxP-family-protein-refolding-chaperone
MMKKNNLKAGLLAIVASTVLLTAGVSAANDYHGSRDGKQGHHQMKGGCGSHHDLRKMFHGLDLSDEQKTEMKALFSAHRDEMKQNRPSKEARAAQKQQMLGFITSPNFNEAEVKQALVAKQEARQQKAVGIIKLQNQAYQLLTPEQQEKFKQRFAKHHKR

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Crispr_ID: NC_010334_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010334_3

1052479-1052592

Unclear

Consensus_repeat	Method
ATAGCGCAGTTGGTGATGGGCTAAAGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010334_3

>merge|NC_010334|3|1052479-1052592|CRISPRCasFinder
ATAGCGCAGTTGGTGATGGGCTAAAGCCCAACCTACGTAATGTATAGCGCAGTTGATGATGGGCTAAAGCCCAACCTACGTAATGTATAGCGCAGCTGGTGATGGGCTAAAGCC

>NC_010334|3|3|1052479-1052592|CRISPRCasFinder
ATAGCGCAGTTGGTGATGGGCTAAAGCC	CAACCTACGTAATGTATAGCGCAGTTGATGATGGGCTAAAGCCCAACCTACGTAATGT
ATAGCGCAGCTGGTGATGGGCTAAAGCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010334.1\|WP_012275982.1\|1065928_1067158_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_010334.1\|WP_012275965.1\|1041379_1042207_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012275971.1\|1049125_1051117_+\|transketolase	unknown	unknown	gnl\|CDD\|183723
NC_010334.1\|WP_012275973.1\|1052724_1053900_+\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NC_010334.1\|WP_150102131.1\|1057451_1057877_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012275979.1\|1059459_1061679_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_010334.1\|WP_012275972.1\|1051214_1052234_+\|erythrose-4-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|184122
NC_010334.1\|WP_012275981.1\|1062776_1065929_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_010334.1\|WP_012275968.1\|1043922_1045572_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|183782
NC_010334.1\|WP_012275974.1\|1054257_1055322_+\|fructose-bisphosphate-aldolase-class-II	unknown	unknown	gnl\|CDD\|181691
NC_010334.1\|WP_012275975.1\|1055532_1056273_+\|DUF481-domain-containing-protein	unknown	unknown	gnl\|CDD\|377313
NC_010334.1\|WP_012275969.1\|1045616_1047347_+\|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl\|CDD\|223107
NC_010334.1\|WP_150102057.1\|1056598_1057342_+\|CadC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226233
NC_010334.1\|WP_012275967.1\|1042899_1043853_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NC_010334.1\|WP_012275966.1\|1042332_1042806_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_010334.1\|WP_012275964.1\|1040246_1041074_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_041415844.1\|1057993_1059427_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012275980.1\|1061974_1062583_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|274936
NC_010334.1\|WP_012275963.1\|1038246_1039533_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
NC_010334.1\|WP_012275970.1\|1047455_1048610_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374

Protein	Function_ID	Function_description	E-value
NC_010334.1\|WP_012275982.1\|1065928_1067158_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.81251e-39
NC_010334.1\|WP_012275971.1\|1049125_1051117_+\|transketolase	gnl\|CDD\|183723	PRK12753, PRK12753, transketolase; Reviewed.	0
NC_010334.1\|WP_012275973.1\|1052724_1053900_+\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NC_010334.1\|WP_012275972.1\|1051214_1052234_+\|erythrose-4-phosphate-dehydrogenase	gnl\|CDD\|184122	PRK13535, PRK13535, erythrose 4-phosphate dehydrogenase; Provisional.	0
NC_010334.1\|WP_012275981.1\|1062776_1065929_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_010334.1\|WP_012275968.1\|1043922_1045572_+\|FAD-binding-protein	gnl\|CDD\|183782	PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.	2.42916e-143
NC_010334.1\|WP_012275974.1\|1054257_1055322_+\|fructose-bisphosphate-aldolase-class-II	gnl\|CDD\|181691	PRK09196, PRK09196, fructose-bisphosphate aldolase class II.	0
NC_010334.1\|WP_012275975.1\|1055532_1056273_+\|DUF481-domain-containing-protein	gnl\|CDD\|377313	pfam04338, DUF481, Protein of unknown function, DUF481. This family includes several proteins of uncharacterized function.	3.40096e-67
NC_010334.1\|WP_012275969.1\|1045616_1047347_+\|thiamine-pyrophosphate-binding-protein	gnl\|CDD\|223107	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism].	3.97338e-128
NC_010334.1\|WP_150102057.1\|1056598_1057342_+\|CadC-family-transcriptional-regulator	gnl\|CDD\|226233	COG3710, CadC, DNA-binding winged-HTH domains [Transcription].	1.78011e-05
NC_010334.1\|WP_012275967.1\|1042899_1043853_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	4.26876e-18
NC_010334.1\|WP_012275966.1\|1042332_1042806_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.20239e-08
NC_010334.1\|WP_012275979.1\|1059459_1061679_-\|PAS-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.09359e-09
NC_010334.1\|WP_012275980.1\|1061974_1062583_-\|radical-SAM-protein	gnl\|CDD\|274936	TIGR04038, hypothetical_protein_MED92_00180, radical SAM protein, TatD family-associated. Members of this family are radical SAM proteins found in about 5 percent of microbial genomes. A portion occur as gene fusions with, or adjacent to, members of the TatD family of hydrolases (pfam01026). The TatD family may have several paralogs per genome, including TatD itself from E. coli (a soluble protein not actually part of the twin-arginine translocation complex), which appears to act in quality control for TAT, directing turnover of misfolded TAT substrates. The functions of TatD family hydrolases in general (other than TatD itself, which may be exceptional within its larger family), and of this radical SAM domain protein modeled here, are unknown.	3.29106e-117
NC_010334.1\|WP_012275963.1\|1038246_1039533_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	9.28134e-12
NC_010334.1\|WP_012275970.1\|1047455_1048610_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0

>NC_010334.1|WP_012275972.1|1051214_1052234_+|erythrose-4-phosphate-dehydrogenase
MIRVAINGYGRIGRSILRALYESAKRDRIQIVAINELAKPEAMLHLTQYDTTHGRFHTQVKLDNQHMIIGDDAIKLLHEPNPANLPWKELDIDIVYEATGVINDRQECEAHLKAGAKQVLISHPSSNDVDATIVYGVNQDLLRAEHTVVSNASCTTNCIVPVIDVLDRHFEVKSGAITTIHSAMNDQQVIDAYHDDLRRTRAAGQSIIPVDTKLARGIERILPHMKNKFEAISVRVPTINVTAIDLSVTLNKRVDIELVNRVLKQATEGSFSGVVGFTNEPLVSCDFNHDPRSSIVDGTQTRVSDGHLVKLLLWCDNEWGFANRMLDTSLEMIKAKRSS
>NC_010334.1|WP_012275971.1|1049125_1051117_+|transketolase
MSSRKELANAIRALTMDAVQKANSGHPGAPMGMADIAEVLWNDFLKHNPNNPDWVDRDRFILSNGHGSMLIYSLLHLTGYALPIEELKNFRQLHSKTPGHPEYGYTPGVETTTGPLGAGISNAVGMAIAEKTLAAQFNKPGHDIVDHFTYCFLGDGCLMEGISHEACSLAGTLGLGKLVAFWDDNGISIDGHVEGWFTDDTPKRFESYGWHVIANVDGHDSDAIRAAIEAAKSVTDKPTMICCKTTIGFGSPNKSGSHDCHGAPLGDAEIAAAREFLGWNHAAFEIPENVYAGWDAKETGAARESSWNDKFAAYEVAFPELAAEYKRRVITGELPAEFEEKAQAFVQECQDKAEGIASRKASQNAIGAFGAILPEMLGGSADLAGSNLTLWSGSKGIQDDPAGNYIYYGVREFGMSGIMNGASLHGGFINYGATFMMFMEYARNAVRMSALMGIQNIFVYTHDSIGQGEDGPTHQPVEQLANLRMTPNMTVWRPCDAAETAVSWKNAIERRNAPTSLIFSRQNLPAQARTAEQLANVVKGGYVLSDCAGTPDLILIATGSEVQLALDSAAALTEQGQKVRVVSMPSTNEFDKQDAAYKESVLPSCVTKRVAIEAAHVDFWHKYVGFGGAVVGMTTFGESAPGGDLLKYFGFTVENVVATVNGL
>NC_010334.1|WP_012275970.1|1047455_1048610_-|methionine-adenosyltransferase
MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACETYVKTGMVMVGGEVTTSAWVDIEEITRKTVRDIGYTHSDMGFDADSCAILNVIGKQSPDINQGVDRADPKEQGAGDQGLMFGYANNETDSLMPAPITYSHMLVKRQSEVRKDKTLPWLRPDAKSQVTFAYNPDGSIAGIDAVVLSTQHCDSVSQSDLIEGVMETIIKPVLPAKWLSKDTKYFINPTGRFVIGGPVGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISIETFGTAKVGEELLIDLVRRHFDLRPYGLTEMLNLARPIYQATAAYGHFGREEFPWEATDKVEVLRADAGI
>NC_010334.1|WP_012275969.1|1045616_1047347_+|thiamine-pyrophosphate-binding-protein
MKRTAAWLTRYALEQLNIKHTFGIPGVHNTEIYDELAQSDSIEPILVTHEGHGAFMADAVTRSSDSMGTLLIVPAAGATHAASGIAEASLDGIAMLVISGGVRTDSKFSYQLHDMDQHKMLEAITKKTFKVTRHQDVVATLFEAYDLANDGEPGPVFVEIPVNLQLDRGEISDLPMYKAPIKSLAHAIDAQLAQAVALLANAKSPAIFVGWGGVEASDCTEQIADLLHSPVATTLQGLSAFSAKHPLHTGMGFGPAAVPAATNAFKECDCLLAIGTRFAEIATGSFGVIVPENLIHIDINPNVFNANYPAKVAIEGDAGAVLAALLQMLQQTKIRDKDAKAIKQAIKRDKQSYIDEWLAHDSGDRVNPAVFFQHLRRSLDDDALVIADDGNHTFLTAELMPCYRAKHFFSPTDFNCMGYAIPAVIGAKLANPEKQVVGIIGDGAFMMTQSELFSASSLGIGAIFTIFNDGELAQISQAQKVPYNAATCTVLPEFKFKALVEATGCRYIRLQNNDEVAEQISKAVLLSEQGIPVVLDVNIDYSKKTRFTKGIISTNLKRMNLPTKVRMISRALWRRI
>NC_010334.1|WP_012275968.1|1043922_1045572_+|FAD-binding-protein
MLTAGNGMRQAENHQCDTVIAGAGVAGLVTALELLKHGQTVYLVDRDTAERIGGLARWAFGGMALCGTRQQRRMKIPDDSALLLRDWHSFADFAKEDLWPKAWAKEYAEHNNEKVYQWLTRLGLKFLPAVNWVERGLFVPGNSVPRYHVLWGTGKTLVETVMAKLTPYVRTGKLNILHRHKVVRPTTDRGTVIGVEVKNEQSQAVFLINAAHVVIACGGINGSSERVKQNWKLPCEQVAEAPFNGANPISDGQLHDEIEAQGGKVTHIDKMWNYAAGIAHPQAEFEGHGLSLIPCKSALWLDHLGKRIGPQPLVTGFDTNYLCQQLAGLSKPWTWQVLNWDVAAKELAVSGSEHNPSIRDKKIFSFLKEIFFGNHRLVEELVQQSADVLCADTLDELTDKMNALAKKNYINGADLAQEIALYDRRAADVRLHNDEQLRRINHTRQWKPDRLRTRKPGPILSSGMAKRDKLIAIRLKLISRKSLGGLQTNLSSQVLDVQGKPIGGLYCVGEAAGFGGGGANGARSLEGTFLSACILTARNAATAIVGSHS
>NC_010334.1|WP_012275967.1|1042899_1043853_-|helix-turn-helix-transcriptional-regulator
MQRVPPDNFISRLYRESPRVSLEEFPVWTLNFLRQVLHFDGAIWGTGHISTKAFHTQTAINISTDIFDQLQANLAINPIFETLFSTQGGAVDMRDVFPDEQFYDSTLYHNCFKPFGIERILSSLHIDERSGIFTLLTLYRYNREEGFSAEEKSIQNRLLYHLLSAASHRQLLALCEQDENPSVHCSAICDCEGIYHCVDSSFLDTLEAHLQTPAVQKFPFPIAAQAHQFTEGELQFDQTRMGDLYRISLRVKNQLDELTARERQIVAEICKGGTFKQIARKLALSPSTVSNHLYRIYAKLGINTRSELVSIANNCKY
>NC_010334.1|WP_012275966.1|1042332_1042806_-|GNAT-family-N-acetyltransferase
MQLTWLAPNERIEVKKFYRQHMPYARLLHKESICVLTQTGSTSANGIEITSSAISCSEIVASARIRPIGQLAILTGMLVHPDYRGQGVGHRLMRELSPVISDGSTYIFALAHLEEFYSQHGVSVIADAPNDIAQLFLKYQSSDKELVLMGLAGAIER
>NC_010334.1|WP_012275965.1|1041379_1042207_+|hypothetical-protein
MLKLIFTLLFLFFSGVVNAYPPCFDEPCISYDKGTVSYHIDDTLADGTPVKISSEIEVSFKVSQYRGEIVNQPTLAKPIDTTITIVCEDDVDCDSMDGLNRHAGERLIFYNDYLREKPFLDLVAANHFVYQAGKTALFTTTNSLSTSRRELLSSLAKNFVDNLITQAGSPIVYIELKGENGLVLHLKLELSNDYWKIVDTVEEGLRNELNQLTIYFNQSEYEAFSNNRAWGEHFLYGGIRVKTCEKTSVTSTIVNPDGSPSRVTRTVTSCWYEYR
>NC_010334.1|WP_012275964.1|1040246_1041074_+|hypothetical-protein
MLKLIFAVLFLFVSGGANAYPPCFDEPCISYDKETVSYQIDDTLADGTPVKISSEIEVSFKVSQYRGEIVNQPTLAKPIDTTITIVCEDDVDCDSMDGLNRHAGERLIFYNDYLREKPFLDLVAANHFVYQAGKTALFTTTNSLSTSRRELLSSLAKNFVDNLITQAGSPIVYIQLKGENGLVLHLKLELSNDYWKIADTAEEGLRNELNQLTIQFNQSEYEAFYANRPWREHFLSGLIRMKRCRETTVTSTVVDSDGIPTRVTRTVTSCWYEYR
>NC_010334.1|WP_012275963.1|1038246_1039533_-|ImmA/IrrE-family-metallo-endopeptidase
MNTVDKGDKLEKTIFDIFSDDIKNDRFWARKDCCKIFTKKGYYSKDREKNITFDVSIEIYQPGQKEYSVLVLIECKNYNHRVPVDDVEEFYAKAQQISGANIKGIIASTNSYQDGAFKFARSKGIGLLRYFNPDKREWILNRSPSLIKGRSESVTERLTVSEGLLEQEYKSKGFDFYCYSSGAYTTSTHQLISNLILQNEPRDHQNIDTRIKTTPPKKHSLVKYLEVDVIEDLCADVLKGIKYFSGPVSVEDLQQYAFEQHTVKVKLGVSLELGVLGCVNFEDGVINIDNKQCETESRTRFTVAHELGHLFLKHSEFMVGENCLDSHLVSVDRTDIILKDVMRMEWQANQFAACLLLPRRAFIKAFLAETEKRGIVDRGFGLLFVDGQSCNVSAMNSISVSLMKRFNVSKTVVIIRMKQLRILRESAA
>NC_010334.1|WP_012275973.1|1052724_1053900_+|phosphoglycerate-kinase
MAILNMQDLELQGKRVLIREDLNVPVKDGVVTSDARLRASLPTIKLALEKGAAVMVMSHLGRPTEGEFNAEFSMQPVVDYLTKALDCPVSLATEYLDGVEVAVGEVVVFENVRFNVGEKKNDEALAKKMAALCDVYVMDAFGTAHRAQASTHGVGLHAPIACAGPLLAGELAALGKALDNPARPMVAIVGGSKVSTKLTVLESLSTKVDQLVVGGGIANTFVAAAGHQVGKSLYEADLIEEAKRLVANAQSRGGDIPVPTDVVVASEFSPTATATLKDVSTVSDTDMIFDIGPDSAEALAEIIKNAGTVVWNGPVGVFEFDQFGEGTKRIAQAIAESNAFSIAGGGDTLAAVDKYGIADKVSYISTGGGAFLEFLEGKELPAVAMLESRGQ
>NC_010334.1|WP_012275974.1|1054257_1055322_+|fructose-bisphosphate-aldolase-class-II
MALISLRQMLDHAAEHGYGVPAFNVNNLEQMRAIMQAAEATDSPVIVQASAGARKYARPQFLKYLMAAALEQYPDIPVCIHQDHGTDPDICQRSIQLGMSSVMMDGSLMADGKTPASYEYNVDVTRRTVAFAHACGVSVEGEIGCLGSLETGMAGEEDGVGAEGILSHDQLLTTPEEAARFVADTHVDALAIAIGTSHGAYKFSRKPTGDVLRIDRIKEIHARIPNTHLVMHGSSSVPQEWLEIINQYGGAIPETYGVPLEEIVEGIKHGVRKVNIDTDLRLASTGAVRKFLAENPSEFDPRKFLKASMEAMADICTTRYEAFGCAGMASKIKPKSLQAMYKAYQSGELDPQIK
>NC_010334.1|WP_012275975.1|1055532_1056273_+|DUF481-domain-containing-protein
MKRILTVMAVVMAAPFAAQAGADFVEGDKTFAGEAELGATLTTGNTETSSVKGRLNMLQELGNWENQYLLEALYKEDTGEVTAKRYYGGIQGDYQFDEKNYIYITGNYEVDPFTGYDYKAVVSSGYGHKFIDSGDMFLSAEVGPGYIYKKLDDEQSALLGFDNEDSVVAHGAVNFTYEFSESSKFTQLFVADYGDSLEGRSESAITANIIGALAMKFAVIVRYNNKPLDDKESTDTETNMTLLYAF
>NC_010334.1|WP_150102057.1|1056598_1057342_+|CadC-family-transcriptional-regulator
MNVYIGPYRFDVELKELIHIDSEKASAFKLSNIEFSVLEQLQACRGQVVSIESIRDKFLPTVVTHHDISRAVQNIKRFLGAEHASWIEAIAKQGYLLHISSQKKPMLNRALHSASLKNYLMCLILGIFLLVFLVVNLATTSDIRLSVPDKIQIKASESILVPIYNSDKDREDYQSRVKEFGLLLGQCEVVKWQRIYLAPSSDGNQLQFVMNNIADDGKACRNLKVTNVAKDWHFIDLAWLKEAGICE
>NC_010334.1|WP_150102131.1|1057451_1057877_+|hypothetical-protein
MNSTLTCYSDTYRVGEGFKNNQQLVLKNTGNGVEVALNFFKGEKLIHKLMAVGTVKKVKDSILSYEVSLASEQHLRGVLQAESESSLQDAIRFSELVLGDGKSDKFLIKVLEMNKASNVVTVQVQPGNGLWACKINKTKFS
>NC_010334.1|WP_041415844.1|1057993_1059427_+|hypothetical-protein
MSKVRVKQEESLSIKFLHQMEVGDSRRLDLYFFLPKEMGINPQSLNEEEYYHSSITGRRSYYSSGLHLPLVQSRFVSQKKRTVEEFRLYLNLFAYQFSVAIETDSKELAQIEDFERFYSSLDELSEQVIHLLKRFRRNEPSDEKWKSYFENADNYLSWLCEQRLLKLLAHAPRTSDFNEINDRVVALCRAEALYRQERSYNSSQTIKDPNRIANKMLLLRRLIQQGVVLKEDLKTLGVGLKKMTTGIATAMVMLVVSALIIKAQGFFSGLTIALVLTLAVIYGFREIFKDDIRNALWRQIQKGRPRWSRTLSDTTSKNTVARQLVWLEFMRKKDLPDAVSQILTKRHSQNKIDAEIFHYGIHTKVSQKDFLAGYSTIQEQVNFSFVPFARNLERGKAKIYKEQDGKISNESVERRYQVNLILALREGKQAPQYARYKITMNRSAIIEITESDLPSGVATMEEAPFKEELKGKSPLVE
>NC_010334.1|WP_012275979.1|1059459_1061679_-|PAS-domain-containing-protein
MLTRKLPLLVSAQGIHWSQQRILAAASQICMLLVSVIILTNIIITLGERRLQEDWATQRYSELQAVGALISDKVSFQQFRTQMVAKSERLKHYLSLPTSENQQKLLSNWDILVDNVPELLGIALFDPQGQHKFATSNDFGEDNLPSALLGGTRNMGGNEIYTSPLEFTPIDGQLEPYLYQFAWLENPDQSIRGYLVTYSSMSKMLKAIKPAYSSKQAPLMMLDTQGLLYAGAQQKPSISRLPETMGGSLKLSYPALWRKMAMSNFGQFHGDIATFVYLKVELTTQYETRREYFLLSYIKNEDIAAKFSQWRNILMIGATLLTLLACLVIFLAHLYRLVQRSREFSIDLTNRLFNSDLGCIIANDSGRVLTANTSASKLLSLPIDELSDRSLQRILNLDDDQYLDFIDTVDKTEHWECELYTDTSPHLWLQILVRIEVSKNKKQRYMLVTFQDISELKHSQEQAMLSHKLNEGPVASVLTDAKGNVVKSNEAFNTLLQIEDSQALNISGLLSEDFSNQWPQIAQKLQIEGGWKGQVFAIDNHGQNSCLQATLKGLLDSSGELEFILFSFEQAVVKQTNREDGSLVPHRSTIFNHKSDLERYFSNLSQHCKDFTSLLMIDISAEDMLSHMSDIGQLESRQKEVEFHLLRDLPHRYQMSHWQLGKLIVVLPDTDSDQAHYFAIETLNRLNDNSLGEGICIGIASYQAGQSLEQLIANAEVALKRAKQTGDQNICQAYTRLLV
>NC_010334.1|WP_012275980.1|1061974_1062583_-|radical-SAM-protein
MTDNQPTLVYDIRDSRYLNITGRCTLRCQFCPKHNGSKQVHQYQLDLNRQPKADELIAQLGEVSKFDEYVFCGYGEPTLNLTSLLDVAKEIKQQGGKVRVNTDGLGNLFHKRNILPELAACVDSLSISLNADTEALYLQHCRPKLAGAYPALLEFIKLAPQFIDDVQVSAINGLEGVDIDACRALVEARGASFKQRELDIVG
>NC_010334.1|WP_012275981.1|1062776_1065929_-|efflux-RND-transporter-permease-subunit
MTTENDTQKGIIAWFARNSVAANLLMWILIIGGLFSTLIINKEVFPSFELNYLQISVAYPGAAPQEIEEGINIKIEEAIQDIIGIKKVTSVASEGVGSVTIEVEDSYDPQDILDEAKLRIDAISTFPVNIEKPNIFRIKPENNVIWISVYGEQSLQEMKELAKTIRDEVAALPAVTRAQVTGVREYEIGIELSEDKLREYGLTFSQVAQAVQNSSIDLPGGSIRAKDGDILLRTKGQAYTGEDFSKIVVSSRPDGSRVMLPQVATINDSFEERLEYTRFNGQPAAIIEVLSVDDQNALDISAQVKDYIEQKRDALPAGAKLDTWGDLTHYLKGRLNMMLSNMFYGALLVFIILALFLEIKLAFWVMMGLPVCFLGAMLFMPLEPFSLSINMLTLFAFILVLGIVVDDAIVIGESAYSEIEKHGHSLENVVKGAKKVAMPATFGVLTTIAAFMPMLMVSGPQGIIWKSIGMIVILCLLFSLVESKLILPAHLAHMKPRKPRAELGRLGRLKAGLNDKVQYFIYNQYRPFLERCIVQRYNTVAVFVGVLMLSIALVLSGQVRWVFFPDIPSDFIQVRLDMDEGSSEENTLKVVQEVEEALYAMNTQMEEELGYPVVKHSFINMSSRTSAFLFAELTKGEDRDIDGEAIASAWRKKIPELLAVKKLNINASTNDAGGDISFRLTSSNLEQLSKASEELKQKLRSYEGVYDISDNFSSGSQEIKLKIRPEAEALGLTLSDLARQVRYGFYGYEAQRILRNKEEVKVMVRYPLEQRRTIGHLENMLIRTPSGAAVPFSTVAELQLGDSYSSITRVDGRRAITIIANADTNKVEPSKVVAEIQEEFLPDLQAKYPNISTALDGGSADEQSALVSLLQGFFFALFTIYALMAIPLKSYSQPLIIMSVIPFGMIGALFGHFVLGLNMSILSLCGIVALAGVVVNDSLILVDFVNRARAEGHSIIKAAVDSGCYRFRAIILTSLTTFVGLVPILLERSLQAQIVIPMAASLAFGILFSTVVTLILVPILYIILDDIRRGFSRFFHWWWQPKPDHEHAQT
>NC_010334.1|WP_012275982.1|1065928_1067158_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MINKIKTILRRMTPLFILLGFIIAAQLLISTKEAPEQKADEVPVPIVDVTQVQVQTVSLNLPSYGIVSPKYKTQLVTEVQGRMLSISNNFVAGGVVKKGDELAVIEPSDYEADLMQAQASLAKAKAALEEERAKGEVAKNDWKGYDGGIPPELGLRLPQLKQEQANVKFQQAALARAQRNLERTVIRAPFDGIIKARNVDLGQYVTLGTNLGELYDTRIAEVRLPLSNSDLAYLESVENPDTDVILSADLAGKTITWQGQIVRSEGVIDAENRMVYLVAEVKDPYLRGNRNEGQLPLKYGTFVTAIIKGRTVEGIVKLPRHLVRDNRVTIVNSDNSIELRQVNVVKSDLDNVYIKDSLVDGERISLTNLTNIEDGQVVKVLGEDANSSQDSDTDNSDTSEEQLASAGVQ

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Crispr_ID: NC_010334_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010334_4

1164546-1164655

Orphan

Consensus_repeat	Method
ATAATGCAGAGCTCCCCTCGAATTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010334_4

>merge|NC_010334|4|1164546-1164655|CRISPRCasFinder
ATAATGCAGAGCTCCCCTCGAATTGTGTGGCAAAGGCGATGATAGAGCTAGTTAAGCTGCAACTAGAACAGACTGCCGTACCCGCATAATGCAGAGCTCCCCCCGAATTG

>NC_010334|4|4|1164546-1164655|CRISPRCasFinder
ATAATGCAGAGCTCCCCTCGAATTG	TGTGGCAAAGGCGATGATAGAGCTAGTTAAGCTGCAACTAGAACAGACTGCCGTACCCGC
ATAATGCAGAGCTCCCCCCGAATTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010334.1\|WP_012276067.1\|1159694_1160297_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182625
NC_010334.1\|WP_012276062.1\|1154657_1155542_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|236871
NC_010334.1\|WP_012276064.1\|1157109_1157718_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NC_010334.1\|WP_012276069.1\|1162366_1163056_-\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|377236
NC_010334.1\|WP_012276074.1\|1165673_1166483_-\|AmmeMemoRadiSam-system-protein-B	unknown	unknown	gnl\|CDD\|275135
NC_010334.1\|WP_012276063.1\|1156598_1157018_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|366361
NC_010334.1\|WP_012276078.1\|1173013_1175929_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NC_010334.1\|WP_012276081.1\|1177995_1179033_-\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NC_010334.1\|WP_012276073.1\|1165102_1165696_-\|AmmeMemoRadiSam-system-protein-A	unknown	unknown	gnl\|CDD\|275134
NC_010334.1\|WP_041415849.1\|1155895_1156093_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012276072.1\|1164777_1164942_-\|YqaE/Pmp3-family-membrane-protein	unknown	unknown	gnl\|CDD\|376592
NC_010334.1\|WP_012276079.1\|1175948_1176452_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|377329
NC_010334.1\|WP_012276070.1\|1163052_1163538_-\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NC_010334.1\|WP_012276076.1\|1167795_1170759_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376076
NC_010334.1\|WP_012276075.1\|1166556_1167666_+\|AmmeMemoRadiSam-system-radical-SAM-enzyme	unknown	unknown	gnl\|CDD\|275136
NC_010334.1\|WP_012276068.1\|1160407_1161940_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NC_010334.1\|WP_012276066.1\|1158491_1159196_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NC_010334.1\|WP_012276077.1\|1171156_1172878_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_010334.1\|WP_012276080.1\|1176680_1177922_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NC_010334.1\|WP_012276065.1\|1157855_1158485_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222

Protein	Function_ID	Function_description	E-value
NC_010334.1\|WP_012276067.1\|1159694_1160297_+\|hypothetical-protein	gnl\|CDD\|182625	PRK10659, PRK10659, acetate uptake transporter.	2.78442e-79
NC_010334.1\|WP_012276062.1\|1154657_1155542_-\|universal-stress-protein	gnl\|CDD\|236871	PRK11175, PRK11175, universal stress protein UspE; Provisional.	3.32319e-42
NC_010334.1\|WP_012276064.1\|1157109_1157718_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.54843e-20
NC_010334.1\|WP_012276069.1\|1162366_1163056_-\|LrgB-family-protein	gnl\|CDD\|377236	pfam04172, LrgB, LrgB-like family. The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control of murein hydrolase activity and penicillin tolerance.	1.05089e-67
NC_010334.1\|WP_012276074.1\|1165673_1166483_-\|AmmeMemoRadiSam-system-protein-B	gnl\|CDD\|275135	TIGR04336, hypothetical_protein, AmmeMemoRadiSam system protein B. Members of this protein family belong to the same domain family as the mammalian protein Memo (Mediator of ErbB2-driven cell MOtility). Members of the present family occur as part of a three gene system with an uncharacterized radical SAM enzyme and a homolog of the mammalian protein AMMECR1, a mammalian protein named for AMME - Alport syndrome, Mental Retardation, Midface hypoplasia, and Elliptocytosis. Memo in humans has protein-protein interaction activity with binding of phosphorylated Try, but members of this family may be active as enzymes, as suggested by homology to a class of nonheme iron dioxygenases.	1.60662e-102
NC_010334.1\|WP_012276063.1\|1156598_1157018_-\|VOC-family-protein	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	6.65991e-12
NC_010334.1\|WP_012276078.1\|1173013_1175929_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NC_010334.1\|WP_012276081.1\|1177995_1179033_-\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	7.72781e-166
NC_010334.1\|WP_012276073.1\|1165102_1165696_-\|AmmeMemoRadiSam-system-protein-A	gnl\|CDD\|275134	TIGR04335, AMMECR1_domain_protein, AmmeMemoRadiSam system protein A. Members of this protein family belong to the same domain family as AMMECR1, a mammalian protein named for AMME - Alport syndrome, Mental Retardation, Midface hypoplasia, and Elliptocytosis. Members of the present family occur as part of a three gene system with a homolog of the mammalian protein Memo (Mediator of ErbB2-driven cell MOtility), and an uncharacterized radical SAM enzyme.	2.52083e-68
NC_010334.1\|WP_012276072.1\|1164777_1164942_-\|YqaE/Pmp3-family-membrane-protein	gnl\|CDD\|376592	pfam01679, Pmp3, Proteolipid membrane potential modulator. Pmp3 is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants.	1.80269e-12
NC_010334.1\|WP_012276079.1\|1175948_1176452_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|377329	pfam04364, DNA_pol3_chi, DNA polymerase III chi subunit, HolC. The DNA polymerase III holoenzyme (EC:2.7.7.7) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either either the tau or gamma product of gene dnax, complexed to delta.delta' and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta' allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi.	1.55711e-46
NC_010334.1\|WP_012276070.1\|1163052_1163538_-\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	1.05123e-25
NC_010334.1\|WP_012276076.1\|1167795_1170759_-\|hypothetical-protein	gnl\|CDD\|376076	pfam18650, IMPa_N_2, Immunomodulating metalloprotease N-terminal domain. PA0572 of P. aeruginosa is an inhibitor of PSGL-1, also known as an immunomodulating metalloprotease of P. aeruginosa (IMPa). IMPa prevents neutrophil extravasation and thereby protects P. aeruginosa from neutrophil attack. It belongs to the peptidase M60 family pfam13402. This entry represents the N-terminal alpha/beta-fold domain.	2.47377e-78
NC_010334.1\|WP_012276075.1\|1166556_1167666_+\|AmmeMemoRadiSam-system-radical-SAM-enzyme	gnl\|CDD\|275136	TIGR04337, Radical_SAM, AmmeMemoRadiSam system radical SAM enzyme. Members of this protein family are uncharacterized radical SAM enzymes that occur in a prokaryotic three-gene system along with homologs of mammalian proteins Memo (Mediator of ErbB2-driven cell MOtility) and AMMERCR1 (Alport syndrome, Mental Retardation, Midface hypoplasia, and Elliptocytosis). Among radical SAM enzymes that have been experimentally characterized, the most closely related in sequence include activases of pyruvate formate-lyase and of benzylsuccinate synthase.	0
NC_010334.1\|WP_012276068.1\|1160407_1161940_-\|MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.24551e-65
NC_010334.1\|WP_012276066.1\|1158491_1159196_+\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	9.22597e-83
NC_010334.1\|WP_012276077.1\|1171156_1172878_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.27596e-66
NC_010334.1\|WP_012276080.1\|1176680_1177922_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	6.25676e-126
NC_010334.1\|WP_012276065.1\|1157855_1158485_+\|transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	2.66159e-54

>NC_010334.1|WP_012276070.1|1163052_1163538_-|CidA/LrgA-family-protein
MASLAKRAQVNLKHQALTGTQIALLCLFAWGCQILADQVNSPIPGGVIGLGILLLLLASKLLPETSVNLGSSWLIGDLLLFFIPPVVAVIKYQDLLEHYGVVLIGSMLIASSCVLLGTAFTVDRLFKYERKKHLRKHLASSKAQIIPLQRVDLPSKERKAA
>NC_010334.1|WP_012276069.1|1162366_1163056_-|LrgB-family-protein
MSHSAIGIFCLVLTLVGYYASKALYRRQRKVWFAPIIVAPVLILLVVINLNITVTDYFTYTHWLAAMLTPATIAFAVPIYRERQLIKQYPLTLTLGVITGLLLGVTSSWGLAHLTNMPAQISHSLMVRSVSTPFAIEATGAFGGVPELTAMLVLLTGIMGMLICEPLFKVAKIRSSVAKGVALGASAHGAGAAKASEIGRQEGVIASLTMIFTGIAMVLSAPLFAAILK
>NC_010334.1|WP_012276068.1|1160407_1161940_-|MFS-transporter
MSDSNDAYADNDLREVKQLGMWASIASLSYIFWIVGGMELVERIAYYGVKASAGLYAKAPVSEGGLGISLSDYGIIIAIWAFMQTFIPVFTGGISDRVGYKETIFASTIIKIAGYLVMAFFPSFYGFLFGAILLAGGTGIFKPGIQGTLVLSTGRQNTSMAWGIFYQVVNIGGFLGPLVAVHMRQLSWDNVFYACAAIISLNFLFLLAYKEPGKEERMERNRKIKAGEIHQEALWRDALHELKKPIVIYYMLVFAGFWFLFNSLFDVLPIHISEWVDTSVIVTSLFGPDGTSNGFFQFWLGLDNTGTKVMPEGMLNLNAGMIMTTCFLVAALTAKYRITTAMLAGCLLSILAFVLIGATNAAWMIVLAIAMFSFGEMMISPKKNEFMGNIAPEGKKAMYLGFVMLPQGIGWTLEGYFGPKLYEMYASKEVFSRELLAERGMSAADISAIPQGEAFTTLVAYTGESAQALTTLLYNTHDIGMAWYIIAAIGSISAIGIYLYGKWLFKLQQR
>NC_010334.1|WP_012276067.1|1159694_1160297_+|hypothetical-protein
MSTQLANPAPLGLMGFGMTTVLLNIHNAGFFPIDSMILAMGIFYGGIAQVIVGIMCFKRGDTFGTTAFTSYGLFWLTLVGLLVMPKMGFAASPAAFMGWYLLLWGLFTAALFVGSLRYPRAKQVVFASLTILFFLLAARDFTGSELIGTIAGYEGIFCGLSAIYFAMAQVLNAEFGRVILPVGPVAVAAFEPVEEKKACC
>NC_010334.1|WP_012276066.1|1158491_1159196_+|pseudouridine-synthase
MESKRARLDRFISVKTGINKKYVRLLLAKGQVLVDGEIARDIDLIIDQFSHVSLDGQVLQANAPSYVMLYKPVGVVSATIDDKHKTVIDLLDREDKHSLHIVGRLDLNTSGLLLLTNDGRWSKKLMSPQHKVDKVYRVTLKNPIDESYIVAFAAGMYFAFEDITTQPAKLEIVDDHTALVTLVEGRYHQIKRMFGRFRNPVIGLHRLSVGTIELGLQLAVGESRDLSESEIQNV
>NC_010334.1|WP_012276065.1|1157855_1158485_+|transcriptional-regulator
MKTSDKILQMLKTQGELSAKVIASELGLTTMGVRQHLQSLEESRDVIFEDRKAIRGRPTRFWALTPQSNSHFSDRHEELTVQLIDSVKTVFGDSGLNQLIAHREGASLALYRNALTATDTLAAKLQVLAQLRTDEGYMATVKYSDGCYWLLENHCPICAAASACVNFCRSELQLFQALLQDEAIVSREEHIIEGARRCAYKVQPHPDEK
>NC_010334.1|WP_012276064.1|1157109_1157718_-|NAD(P)H-dependent-oxidoreductase
MELVIVSASQRSQSQSAKVARYLNERVEGFSKVNHIELYQYNLPFWDGSAETKSAAGSRWPIISQQINKADALVLITPEWGGMASPLMKNFLLMCDKQDTAHKPALLVAVVSGISGAYPIAELRMNALKNNKLVAIPDHLIIRNVEQVLNHDKPDDERELHLRERIDYSLHMLEQYSEALKTIRYQHQNQPFPKQQEYSYGM
>NC_010334.1|WP_012276063.1|1156598_1157018_-|VOC-family-protein
MMRLEHLNLVVRDIPTTLEFYQAIFPHWQIRGGGKSSWHGVERNWVHFGDDYQYLTFNDDGNEDNRDLSGHQVGLAHFAYVTDDLDGVIERLKASGYPVDKAGAEEPYRRNVYFIDPDGYEVEFVEYLTDIPTMRNRYE
>NC_010334.1|WP_041415849.1|1155895_1156093_+|hypothetical-protein
MRLFNAEEGCQKRSRMASFSGSDAVLTSLTVEQLCSSLVANHMDVVNVINAGAINDLASKSLNSR
>NC_010334.1|WP_012276062.1|1154657_1155542_-|universal-stress-protein
MIAYHHTLTVIDNDSPAQFALNKALQLAKKTNSKVTALKIDRPYSNLLSKIGLIPNNALDPMLFVKKLLAKYQRQGVEVEIKSINNLKDHVALLNETQSGDYDLVIINNKHHNAILSEFIPRGEAHLLRDCEQPIMIVGNKSWRPQGHILTALETADSNTEHKELNQCLIDDSQQLASLLDNDIHLLNCYQLENWSMSVTKVSHQSSDEEQKKQHWDRLVNSAKSYHLADDHLHLEQGLPDHVIPTVANQCNANLLVIGAGEHHGVIGELKGHTSSVLVDELKCDILAIKPHLH
>NC_010334.1|WP_012276072.1|1164777_1164942_-|YqaE/Pmp3-family-membrane-protein
MDTNKLLLIIIAILLPPVAVFLKSGVGKDLLINIILCLLFFVPGVLHALWVVTK
>NC_010334.1|WP_012276073.1|1165102_1165696_-|AmmeMemoRadiSam-system-protein-A
MPALPAVKLSQSEKRQLLTIVRDTLIAAFYPDYVVKKQRQLDGGLEQLKLGCFVTLTLDGELKGCIGHIESDRPITELLPALATSSAFNDRRFPPLVESQLNSLRIELSLLSEMQGVEVNEQAELQRYLKGNSLGLVLSEGDRRAVFLPQVWQQLPEPKEFIEALKAKGGWDRDYWSSNMKVEVFSVTHFSEKQQYS
>NC_010334.1|WP_012276074.1|1165673_1166483_-|AmmeMemoRadiSam-system-protein-B
MFTSIRPAAVAGLFYPAAPDELRAMLEGYLARARMSLISQANTQHSQAKVIIVPHAGYIYSGLVAAHAYVLIESMAATVNKVLLIGPAHRVYLQGGALPQSQYFETPLGQISIDKRSVEMLESNPHITVSDLPHQQEHCLEVQLPFLQHCLNQFELIPLLIGESDPQETAKLLEQLWGGEETLVVVSTDLSHFHRYAEATHLDKLTCQKILQGLETIFPEQACGSFCLNALMLQLKRHQLCLTQLSYQNSGDTAGDKNRVVGYASFASR
>NC_010334.1|WP_012276075.1|1166556_1167666_+|AmmeMemoRadiSam-system-radical-SAM-enzyme
MSTNHGVITTDNSDIFTVETQYWHRLDDGRVQCDLCPRHCQLREGKRGVCFIRQNIDNQIKLTSYGRSSGFCIDPIEKKPLNHFYPGSSVLSFGTAGCNLSCKFCQNWDISKSREFDTLGAKAMPEDLASAAKRMGCKSVAFTYNDPVIFHEYAIDVAKACHKLGIKAVAVTAGYICPEPRVEFFKFMDAANVDLKGFTEDFYHNICGGHLSDVLDTLLYLHHETQVWLELTTLLIPGENDSSKELERQCRWISDNLGPDVPLHFSAFHPDFHMMDTPATPASTLTRAREIAINQGLNFVYTGNIHDPSGGSSYCANCKKLLIARDWYELGEYHLDNSGRCDYCGTQLPGCFDGPPEHFGRRRIPVSIS
>NC_010334.1|WP_012276076.1|1167795_1170759_-|hypothetical-protein
MKPWLLSSCILLGLSACGGSDDSDSDDNGGVTPPLAQAPSVELGGGITAWNDKLMSLTATVNIYASGSSTFEWQQVSGPEVSLSSASVDGVTIDARTLMQDSSITLSLTVTDSSNQTASDQVTIQLNDRISTAMATGDASIAADLSPQIAKRALTHIEQYRSDGETLINNIYQTGVVEYDQGRHSQMIQLAGAEHAYPQNKAYAIVTGNKGLTFAATNDKSGQRNAAFGTDIISSMQQGNNASFEPSFKRLLGWMLEQDQATLAEPKQIRLFLMGGSTVNRINSWIGEHYPNWQVETCSDEATLSSCLAEAKLVITGSSELFSIETVEPLIAQIQADKQPLIYLHLHSWNSVPLTQTVLNPMGFSMQGPGGPGNYFAQDKADWRSASTMLESYSALDSEQLWLTLFDNERVDFNLANCASNCDARFNDDYRPALASIRSNIQAIETSKLDIFNQPDYSLYKLLILLGDNYRQAILYPMDVATSDSLHYLKAYYADHSVYNFRDINPVQKDLGNFSRSDFSHITAVDQTVNLTSKKGFRSVGVYALPGQTMSVTRSDSSDVRTWVFINTLRSGSTHEFASNGYNRPKLLQSTHIEVKAGETIKFTSPYGGPLQIRFDQTDLPTQFSFSQVGLHPYWREGMDGNKFMQDLAANQYDWSELATAHFEVHSKLDKMQKTMEHEPLWNTPEKMASAIMTQVHNYPHLLAGFKGPFIDEVAEINDFAVNQGWQIDTLDTVKHMNADQATCGAGCSGNPYDASWSFSPTGHGDIHELGHGLEKGRLRFDGHDGHSSTNPYSYYTKSRAYTELGKLPSCQGLNIDDEFAVLQASMNQADPFAYMQEAKLTSWSNGMATMLQMMVAAQKHGALENGWHLLARLHILLREFERAKGAEELWLEKRAQLGFSQFSLDAAKNISNNDFLMVAMSYATKLDYRELYQMWGLATSQAAKDQVASFNFSVIDRKIYVYNPGDYCLSLDLLAVAVDGQQPWPL
>NC_010334.1|WP_012276077.1|1171156_1172878_+|methyl-accepting-chemotaxis-protein
MSVLIEQLGQDEVRQSHQSQSGFISLFKSVRFQLKFIVFLTVISFLFLGYKGITGMQDAGESIGELHAQGMQHSIRAGKVLNELAIARSELLLAFQHDPSSQFSEMHNHPLTLHISQAQAAIAQLHNIIDNEILGANLDNEERLQVNRLKSLLDKVVALGFTPTIDALQRGEYEAANRVLLTQINPLFKSITAEAQSFLDLQVAGGEETYIGFNQDMRVYILLVAIFSSVCMLVISISSSLIVRRMGKAMTEIEMTANDIANGDLTKRIVISGDDEFTHIADYVNRIAARFQHAVQNTHESTSRLASAAEENSVVSTQTQRNVVEQQQQTQQIAAAIHQFTATVREVAQSAEAAASSSLEANDAAHHGQAVVDESISVIETLSTEMDGATEAMQLLSKSSDEIGSVVDVIQGISQQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAKRTQDSTEEIQQMIQRLQQGARDSMLMMERGTEQAKLSVEKSAQAGAALLQIMTSIEQINALNTQIATASEEQSLVTEEINRNIINISDISDQTAAGAEQTQAATHELAQLAESMQQEIAYYRV
>NC_010334.1|WP_012276078.1|1173013_1175929_-|valine--tRNA-ligase
MEKTYNPQSIEQSLYQNWEEKGYFKPHGDESQGNYCIMIPPPNVTGSLHMGHAFQDTIMDTLTRYQRMKGKNTLWQVGTDHAGIATQMLVERKVAAEEGLSRHDLGRENFIDRIWDWKEQSGGTITKQLRRLGASVDWDRERFTMDEGMSEAVQEVFVRLYEDDLIYRGKRLVNWDPALHTAISDLEVENKEKQGSMWHFRYPLADGALTADGKDYLEVATTRPETMLGDSAVAVHPDDERYQSLIGKFILLPIVNRLIPIVADDYVDIEFGTGCVKITPAHDFNDYEVGKRHALPMYNILTIDAAIRSSAEVVNTDGTANNDLDNSLPERYAGLDRFKARTAIVEEFETLGLLGKIDPHGLKVPYGDRSGVVIEPLLTDQWYVAVAPMAKTAMEAVENGDIKFVPQQYENMYNSWMRDIQDWCISRQLWWGHRIPAWYDEAGKVYVGRDEAEVRAKHKLDDSVVLRQDADVLDTWFSSALWTFSTLGWPEDTAELKAFHPTDVLVTGFDIIFFWVARMIMMTMHFIKDENGKPQVPFKTVYVTGLIRDEAGNKMSKSKGNVLDPLDMIDGIDLESLVTKRTGNMMQPQLAAKIEKSTRKEFSDGIEPHGTDALRFTLASMASTGRDINWDMKRLDGYRSFCNKIWNASRYVLMNTEVQVEGASDDAIGEALDCGQILVDGKPGEMELSIADRWIIGLFNETVKAYDEHMANYRFDLAANTIYEFTWNQFCDWYLELTKPVMQSGTEAQLRGTRHTLVNVLEQMQRLMHPMMPYLTETIWKRVQPLAGVEGDTLMLAAFPEYQADKVDAVAMEDLEWVKQVITAVRNIRAELNIAPSKPLNALLRGVSYKDRARLEANQIFFTTLAKLETITIMSEDDVAPMSTTQLIGDMELLIPMAGLIDVAKEVARIDKLLEKAAAEFARIEGKLSNQGFVAKAPAAVIEKERAKQAEYQRDMDKLTEQKAELAKLEG
>NC_010334.1|WP_012276079.1|1175948_1176452_-|DNA-polymerase-III-subunit-chi
MFTSQSSSQSQAQFYLMPKDVNRASNAPKTALEQVYLLACQLAERAFTAHELVYIHCQDQQQAYAVDELLWQFEPQSFVPHNLKGEGPLGGAPVEIGFDRLGANKKRHLLINLADQVPQFAVNFGQIIDFVANDDSHKAIARDRYRQYRALGIALSTQDIATQPINF
>NC_010334.1|WP_012276080.1|1176680_1177922_+|DEAD/DEAH-box-helicase
MNFTDLKLSATIVDHLPANLTAATEIQGLAIPEVLAGRDLLALAQTGSGKTYAFGLPLLQTIINDAVESREVKALVLVPTRELALQVAEALKLVSASTEITVLCGGVDKAEQLKELEQGPQLIVATPGRLLDLLRQQQLSLKSVKQLVLDEADRLMEMGFWPDIERILEFVPAKRQTLLFSATLAPELNDKALKLLHNPKKIAAQAVNSVVADINESLYIVNKGDKARALIALIKQHKWSQVLVFINGRDDADKLAKRLVKADINAMALHGDKEHQQRQQTLEAFKACELQVLVTTDLLSRGIHIDALPVVINIDLPSSAPVYVHRIGRTARAGDNGIAISLVCHGEADNLKAIQLLTGRELELEALGGFEVTDQPSSGERKRAPRDKKANRRSQNKRSAKDFAAKRTKFPAK
>NC_010334.1|WP_012276081.1|1177995_1179033_-|alkene-reductase
MKYAPLFEPYKLSEQLTLKNRIVMAPMNRSMADEEFLPTAAMMNYYAGRADTGLIISESLMISQNAQGYPNTPAIYLAEHVAGWRKITDKVHENDGKIFAQLWHTGRVSHPIYLAGQQPWAPSAVPLEGRVPRTDNLQYGIPKEMTEQEIKLIITEFANAAANAKEAGFDGVEIHAANGYLLDQFLHWDTNRRTDAWGGSEENMSRILFEVIDAVKQNITHVGVRLSPVAYLNLKHDERDILVSNYLLQRLNDCNLSYVHTGMFEDTYQAHLQGSVTQYIKSLYHGTIIACGGYNAESGSIAINQGDANLVAIGRPLIANPDYVEKIRTKKPLTVYDAEMLNQLI

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Crispr_ID: NC_010334_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010334_5

4228161-4228253

Orphan

Consensus_repeat	Method
CAAACTTGTTTGCTCGGTGGCCATAGGCCTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010334_5

>merge|NC_010334|5|4228161-4228253|CRISPRCasFinder
CAAACTTGTTTGCTCGGTGGCCATAGGCCTAAAGTAAAGGGTCAGCCCAGAACGGGAGGACAAACTTGTTTGCTCGGTGGCCACAGGCCTAAA

>NC_010334|5|5|4228161-4228253|CRISPRCasFinder
CAAACTTGTTTGCTCGGTGGCCATAGGCCTAAA	GTAAAGGGTCAGCCCAGAACGGGAGGA
CAAACTTGTTTGCTCGGTGGCCACAGGCCTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010334.1\|WP_012278536.1\|4226502_4227741_+\|reactive-intermediate/imine-deaminase	unknown	unknown	gnl\|CDD\|129116
NC_010334.1\|WP_012278543.1\|4236395_4236737_+\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225196
NC_010334.1\|WP_012278544.1\|4237643_4241054_+\|TagA-like-protein	unknown	unknown	gnl\|CDD\|287440
NC_010334.1\|WP_012278532.1\|4222533_4224237_+\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|237305
NC_010334.1\|WP_012278547.1\|4243340_4244222_-\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012278533.1\|4224314_4224833_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237322
NC_010334.1\|WP_012278529.1\|4220871_4221789_+\|urease-accessory-protein-UreD	unknown	unknown	gnl\|CDD\|223899
NC_010334.1\|WP_012278541.1\|4234226_4234475_+\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|377305
NC_010334.1\|WP_012278537.1\|4227977_4228124_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236539
NC_010334.1\|WP_012278546.1\|4242325_4243159_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380191
NC_010334.1\|WP_012278531.1\|4222213_4222531_+\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|237303
NC_010334.1\|WP_012278538.1\|4228310_4229051_-\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_086020040.1\|4220453_4220624_+\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012278542.1\|4234831_4235827_+\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
NC_010334.1\|WP_049763934.1\|4230709_4233925_+\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|236892
NC_010334.1\|WP_012278545.1\|4241154_4241829_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NC_010334.1\|WP_012278535.1\|4225635_4226259_+\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NC_010334.1\|WP_012278530.1\|4221884_4222187_+\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|183913
NC_010334.1\|WP_012278539.1\|4229498_4230098_-\|S-(hydroxymethyl)glutathione-synthase	unknown	unknown	gnl\|CDD\|235451
NC_010334.1\|WP_041416100.1\|4224854_4225520_+\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900

Protein	Function_ID	Function_description	E-value
NC_010334.1\|WP_012278536.1\|4226502_4227741_+\|reactive-intermediate/imine-deaminase	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.81231e-29
NC_010334.1\|WP_012278543.1\|4236395_4236737_+\|TM2-domain-containing-protein	gnl\|CDD\|225196	COG2314, XynA, Predicted membrane protein [Function unknown].	2.01277e-10
NC_010334.1\|WP_012278544.1\|4237643_4241054_+\|TagA-like-protein	gnl\|CDD\|287440	pfam10462, Peptidase_M66, Peptidase M66. This family of metallopeptidases contains StcE, a virulence factor found in Shiga toxigenic Escherichia coli organisms. StcE peptidase cleaves C1 esterase inhibitor.	9.09214e-75
NC_010334.1\|WP_012278532.1\|4222533_4224237_+\|urease-subunit-alpha	gnl\|CDD\|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
NC_010334.1\|WP_012278533.1\|4224314_4224833_+\|urease-accessory-protein-UreE	gnl\|CDD\|237322	PRK13261, ureE, urease accessory protein UreE; Provisional.	2.11913e-50
NC_010334.1\|WP_012278529.1\|4220871_4221789_+\|urease-accessory-protein-UreD	gnl\|CDD\|223899	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones].	4.56173e-62
NC_010334.1\|WP_012278541.1\|4234226_4234475_+\|YdcH-family-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	3.22887e-08
NC_010334.1\|WP_012278537.1\|4227977_4228124_+\|hypothetical-protein	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	2.14204e-10
NC_010334.1\|WP_012278546.1\|4242325_4243159_+\|hypothetical-protein	gnl\|CDD\|380191	NF033187, internalin_J, class 1 internalin InlJ. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin J (InlJ).	9.27367e-26
NC_010334.1\|WP_012278531.1\|4222213_4222531_+\|urease-subunit-beta	gnl\|CDD\|237303	PRK13203, ureB, urease subunit beta; Reviewed.	3.45381e-62
NC_010334.1\|WP_012278542.1\|4234831_4235827_+\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	1.01041e-147
NC_010334.1\|WP_049763934.1\|4230709_4233925_+\|mechanosensitive-ion-channel	gnl\|CDD\|236892	PRK11281, PRK11281, mechanosensitive channel MscK.	2.41247e-160
NC_010334.1\|WP_012278545.1\|4241154_4241829_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	5.11066e-15
NC_010334.1\|WP_012278535.1\|4225635_4226259_+\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	3.51196e-128
NC_010334.1\|WP_012278530.1\|4221884_4222187_+\|urease-subunit-gamma	gnl\|CDD\|183913	PRK13241, ureA, urease subunit gamma; Provisional.	7.77533e-71
NC_010334.1\|WP_012278539.1\|4229498_4230098_-\|S-(hydroxymethyl)glutathione-synthase	gnl\|CDD\|235451	PRK05417, PRK05417, glutathione-dependent formaldehyde-activating enzyme; Provisional.	9.37635e-133
NC_010334.1\|WP_041416100.1\|4224854_4225520_+\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	7.84949e-56

>NC_010334.1|WP_012278537.1|4227977_4228124_+|hypothetical-protein
MSDISRDQVEDYAERKRMSIKEIERCLAPMHDYAHNYEHGYEHGYDPE
>NC_010334.1|WP_012278536.1|4226502_4227741_+|reactive-intermediate/imine-deaminase
MSNDIVKVSRNTDNAPQNSVSTQTVAFSHYNNISAQLPLDPKTGNIVVGNVKDQTEQCLANIKAIVESIGHVMDDMVKINIFVMNIEDIDVIDEIYAKFFPNSTPTRTVVAVAALPMSDALVQMDALISNGEGTAPQAPCALIKVSRNTENAPISAISTQTVAFSHYNNLSAQLPIDPITGKLVKGAIKEQAQQCLNNIKAVLESIDHVMGDVVKTTIFVKDIADIEAVNEICSAFFKNDVPARTYVNAAALPMGALVQIDTVVSHGDGTPPQAPEDTRHIVIEASNTENAPQASYSHTVAFSHYNHISGQLPVVPTNGEIVAGGVKEQTEQCLNNIKAIVESVDHVMDDIVKINIQVKHIVDIDAVNQVYSTFFNCDLPARTVVGVSAIPMDALIQIDAVVSNCEGTPPQA
>NC_010334.1|WP_012278535.1|4225635_4226259_+|urease-accessory-protein-UreG
MTELEYKQPLRIGVGGPVGSGKTALLEVLCKALRNKYQIAVVTNDIYTQEDAKILTRAEALDADRIIGVETGGCPHTAIREDASMNLAAVEELAKRHKNLDVVFVESGGDNLSATFSPELADLTIYVIDVAEGEKIPRKGGPGITRSDLLIINKIDLAPYVGASLVVMDQDTKRMRPEKPYIFTNMKTGKGVPEILTFIETAGMLNI
>NC_010334.1|WP_041416100.1|4224854_4225520_+|urease-accessory-protein-UreF
MLPELRLYQLISPSLPVGGFTYSQGLEWAIDKGWVTTATELENWLKSQMLESLTCLELPVLVRIQGYLAANDYAQAQAWCNYLAASRETKELRLEEHQRGIAFVRLLPKLGIALTSELTTMVKTSQLAAFALGINQWQIPLDKALGGYLWSWLENAVVVGIKLVPLGQSAGQQLLMSLAENIPAAVEKALLITDQEVGSFTPAQVMASCRHEHQYTRLFRS
>NC_010334.1|WP_012278533.1|4224314_4224833_+|urease-accessory-protein-UreE
MIKLTQILTEVPSVDAKVCLTMVQRTKSRLRIVLEDGQDAGLLLPRGHILHHGSLLSTDDGFVVEVVAAKEQVSTARSDNPTLFAKGCYHLGNRHVPLQVEAGWCRYQHDYVLDEMLIGLGLQVTVENEAFQPEAGAYGGTTGGHSHGDAYDDSLEKASHEHAHGHPHKHEH
>NC_010334.1|WP_012278532.1|4222533_4224237_+|urease-subunit-alpha
MAKISRQAYADMFGPTVGDRVRLADTALMLEVEQDLTTYGEEVKFGGGKVIRDGMGQSQALSKDCVDAVITNALILDHWGIVKADIGIKHGRIVGIGKAGNPDVQPNVDIVIGAGTEAIAGEGKIITAGAIDTHVHFICPQQVEEALCAGTTTFIGGGTGPVAGSTATTVTPGIWNMHRMLEAADELPINVGLFGKGTVSNPDAIREQIANGAMGLKIHEDWGATPAAIDTCMTVADEMDVQVAIHSDTLNEGGFYEATTKAIGDRVIHVFHTEGAGGGHAPDVIKSVGEPNIIPASTNPTMPYTINTVDEHLDMLMVCHHLDPAIAEDVAFAESRIRRETIAAEDILHDLGAISVMSSDSQAMGRVAEVAMRTWQCAHKMKLQRGPLEGDSELSDNTRLKRYVAKYTINPAITHGISHEVGSIEKGKLADIVLWDPAFFGVKPALVLKGGLAVYAPMGDINGAIPTPQPVHYRPMYAATGKARAATSMTFLPKAAIEAGITEKLKLTHLIGEVKGCRNIRKKDMIHNSYTPVIELDSQTYVVKADGMALVCEPLAELPMAQRYFLF
>NC_010334.1|WP_012278531.1|4222213_4222531_+|urease-subunit-beta
MIPGEIIVNKALGEIELNQGYDKYTLSVANIGDRPIQVGSHYHFYEVNEFLSFDREPTLGFRLDIPAGMAVRFEPGQSRTVELVAYSGKRIIQGFDGKVMGKIKE
>NC_010334.1|WP_012278530.1|4221884_4222187_+|urease-subunit-gamma
MELTPREKDKLMLFTAGLVAERRLNRGLKLNYPEAVALISCAIMEGARDGRTVADLMNYGRTVLTADQVMEGVPEMVHNVQVECTFPDGTKLVSIHEPIV
>NC_010334.1|WP_012278529.1|4220871_4221789_+|urease-accessory-protein-UreD
MNIPESVSYKRPESHFGWRAELSLKYGIKREKTRLLERHQLGPLTVQKTFYPEGAACHTYLLHPPGGVVGGDQLSFNIDVGTQAHALLTTPGATKFYRSNGEQAWQSQELTVAKDGLLEWLPMENIFFPGANCKLLTQVNLATNARFIGWEMQCFGRPMLAETFDNGQVLGQTFIHRDHRVLLAETLRVKSQSHIDQAAALRNFAMSGSLYITPIEPELIDKINQVIDEQQLRFGSEILLGSSEIGSASTSSAMSLTSTAEDSLIVVRALGQQTEPMMASFVQIWRCVRLHWFGELPEVPRIWST
>NC_010334.1|WP_086020040.1|4220453_4220624_+|hypothetical-protein
MKTLLPTLIMLLIPSVSWAHPGHGSVGLFHHLSDVAPLILLVAIIACGAVWLRSKR
>NC_010334.1|WP_012278538.1|4228310_4229051_-|hypothetical-protein
MALHKSKAELFPLLHLLDDFSHFQLQDGFIQTLAEKDLRLRAPSAIELDESSVIPCVSIYDDSQPENTTALQQYFCSKSADDNAAIEQVFNTLSPVSHLSESRHKRHYRLVAFAEEEKRTPVAFVTFNVGLLDSWYSDDNTCHDRQIGGCCYLLYAYVVPKWRHLGVGSCLFHLISNLFWAQLQFIDAQAKSHNLTMVPLIYESEAAKGAEGLLSQVAMNINQYEALSLINDKASTIIKPCMSNIS
>NC_010334.1|WP_012278539.1|4229498_4230098_-|S-(hydroxymethyl)glutathione-synthase
MISKILKLFLRKNSTKVLIHPSVDNNIFPILSGFSGGSLTCHCKSKPVTVRLSGQTAHNHVCGCSKCWKPKGASFSQVAVIGRDNVKITANESKLVVVDAEAAINRYACKDCGVHMYGRIHNEAHPFFGLDFVHTELSKQSGWAPAEFAAFVSSIIETGTNPENMPAIRERLLELGLEPYDCLSPDLMDAIAAHVAKKA
>NC_010334.1|WP_049763934.1|4230709_4233925_+|mechanosensitive-ion-channel
MLFSLPSNGQTLPDVNFLKSEIARLNSESPKNEALISQYETLLSRVNGYKKQKATRDEYRNIISQFPVQRERLLKKINDVEQLDIFNVLHKTKYNDLSQSIATLQAAVTEWRSTSQSNSDKNKQLINASTTLPQSLAQIDREIEKASIIKSDTDGQLDQWLESSNLTTLKLQRQVTSAQLQSLDERTELLGLEQQLLNKKIQTASPILIELQDKLTRVEQASVKTLIEQARKISEDSALKGAENQQQIEQLKAYTVELEQVLAEIDQARISYQKVEAEQRSLMDEQRLIKNNLAWLRNSTAFGASIRAQLQRLPAKVDTQYIPDIIAKAHIRKYEIGQETNKFALQATATGEPASDKAPDKVTTLLNELLVQLAKDYEKLISALSQLKLAKDQYAQAVEKARTFLKQQQLWTRSNVPIWQHLTDFNAEIWFGSKTPFKEMLDKSTQKQSVSFLALFALYTSLLVYMMIRLNRYAARRKDELQKVFGHPLKDRFHFTVSLFSLAILCALILPIWYAITAWGIYWFWPVSTSNEVTTLIFASASALFVVELIHALSYKQGVLPLHLNWPDQICSYLHKGSHQVRWPFVILLLCIFMAELISGTNEAEISRVLFLLLMAAMMTVFISLLKRNNLPSTLPSPLNQGLSLYLLRLVIIGSFIVIITMAVMGLYIASWVLLIYQQLTLYVVLAVLLTYQMGERWLKLEHRQLNYQRLLAHREELIAQQQEQADELPEITELRETIPDVEERSLASEQISEQSLTLLRGLSLIGLVVAVLTLWSSALEMTSWLNNIVVWQVNEVTETGVKLVDVTLQSLLYAMVTLIVTLVGVRNLPGILELLILRRLELAPGTGYAVTTLLRYMILMGGLMGVFSILGFQWSKLQWLVAAFGVGLGFGLQEIFANFISGLILLFERPIRIGDIVTINDLSGTVSKIQTRATTIIDWDNKEIVVPNKTFITEKLINWSLTSPMTRIVIPIGVAYGSDIDRVETLLYQIADEHPLVLPDPQPSVVFLSFGASSLDFELRVHITAIELRLSTVHIINKNIDRLFREHDIEIAFPQMDLHVRDWPPKPTDS
>NC_010334.1|WP_012278541.1|4234226_4234475_+|YdcH-family-protein
MLNENHALIFDFPEFKQDIVYLNYTDEEFDKLSKQYHLLDYDIRQLEIAGSPTDDEHMHQLKLTRANLKDTLFQKLKAHHDE
>NC_010334.1|WP_012278542.1|4234831_4235827_+|adenosine-deaminase
MNYLQLPKIDLHCHLDGSVRPQTVIDLAKIQGIDIPSDNVDDIKSLMVAPESCPNLDEYLTRFALPVSVMQTEAALERVSFELFEDAAKENVKYLEVRFGPQLHRKQGLNFEQIIGSVVKGMHRAEALYDIKGNYILSIIKVLPKDDINEVIDAGATFLNKGVVAFDLAASEEPGFCHEYIPYAKYALDKGYRITIHAGEQGVGQNVYDAISLLGAERIGHGIHINNHKDAYELVRAEAVALEACPSSNVQTKAVENIESHPFGDFYRDGLLVTINTDNRTVSDTTMTKELQLAAEKFNLSEQDYFQIYKISVENAFASDEVKQSLLKFIA
>NC_010334.1|WP_012278543.1|4236395_4236737_+|TM2-domain-containing-protein
MQNIDCPQCNHKIDLNSISCPQCYAAQGLESLAGVDPDMRIKNQKLAIWFSFLLGGLGLHKFYLGQHLKGSLYLAFSWTLVPMVVGWVDAVRTLKMTPFNFEQRYCKRVSQGI
>NC_010334.1|WP_012278544.1|4237643_4241054_+|TagA-like-protein
MLQNKVRSLALLVTSALLPLSAQAQINMQQSAEQTFSIITSMKQRGMSGDGVIEENNKRYIVYNNHRFELHENNYPKFPLPYGGAEALAPYYDTFPFLDEKWDIVMNNDHGFYFIHDEFGSMSSSTDGCFIEYNPNQMFSTEQVMRFENKECISAPTISNVELSGVFDLGATLTWQGHVAGNNYKISLTQTNSKMAPQLFTANEPEFFFSQLMPETQYQVQIQACNTTACIELEAFNFITEKEKVGFHDGTRNLNHLEGNIAAHVSFMQSHSITAPFGNEDLGAPDIVIGREAMLLVSPQQDDINQMWVEIYQDGELVTRQIMLPPANQPKTDQYAVEGRPTVIFGHNLWSLPLKWNWIKPGLSLQFVDNHGRHSELSQQNIEFGGAPELIIQNIDMGMLTQPRGRNTMANNTAEHAADYFQKIPVSKLIVGQYASAYFEKVTMPNGKVYTERSETDGGWHGGDMREAIGKALISTGINNANVGITATAGSSQAYNRHFNHITAHTNVGVYIDAETGQTETVVHGGSGGGGIVTLESTTGNEWSHELGHNYGLGHYPSMASVHDMQSGWGWDAVFKRFIGNINWRGSAKELNLGGEISPPYLDIFSFLRDAQAGGENQKMGLVSNYTYEHPMQARRTQAWLNNGYNQTPDGTSYYVKWDQEQQSYLNVESDALAAQQTGIKVTTLVGIYDPMRLNPSQIYPVLYGNYGNTFQLPNATEYTPIDSGQTLTGGWHHYQSLTEEQLALTTWKTLADNGNYKRLCQFSFTTTTGDNVNLVGHVDSTNNNCRTSDDMHWSINGQSQQMVSATGDYSLLYPLGRGQIVYTPTPEIGEVNLCLLTDINNPSHNGAGFVQGDKCSQIPGIKHSNNRDWTYTIWRNPTEQVQYSHNNVCRLEVLDKQGQFVSYDLPGQRLNSSESNKFHINLPLQELAQVTLYCEDNEGVHQLDQLTPSLDTGLESLPEAVILGQEYGYDVLNTGMGNGWFDHSAQMNYNTLTKRDLNNLATMQVNNLRLPVCRFELDIDGTTQTVHGFVEQLVTNDYRCTGGDEITVVQNGSENRVESKLNQFQWLSMWNPQHTGEQIKAKTGSEQNLCSITRSGFYGAGFINDGGQCVQASGIKWSNGYNWVFSSGHAQYTYK
>NC_010334.1|WP_012278545.1|4241154_4241829_-|RDD-family-protein
MDKIPDYASYSYDELLDVEQHINKKQYPERYAEIIRLINDPRYLKEDKQECERRDQVSKYSTFWPRFWAAMLDGILFSALLIGQCYLFGVEYDQQNHFQQAIHGMQLCFYIILMHGFFGQTIGKMCLKVKVLNHDDETRIGLKQALRRESVNFAINAFWLGLLLYIGVTVGLNGNISDSLINTVIAFGVLAFIWDISEFITMLSNEKRRALHDYIGKTVVVRMQ
>NC_010334.1|WP_012278546.1|4242325_4243159_+|hypothetical-protein
MDYKQPLAMTLLALAVSSSCFAADYQNVNDIPFQDSNFKSCVLAQKLQDPAAITKLVCRQAKVNNADELNHFPALEVLWLSGPQLTQVDLSNNPKLSELSITKSKLSQLDVSKNTQLKEFNISFNQIANIDLSHNPKLTDISVVGNQLTQLNLSQNPELTYLWAKENRLTSMDFSHNPALIQVGLTSNQLTEVNVSKNSVLNSLALMYNPLTQLDVSHNPKLTKLHLTDNRLTTIDVSHNPKLRALWATGNPLTELDISNNPSLSDYEADEGVKVSE
>NC_010334.1|WP_012278547.1|4243340_4244222_-|hypothetical-protein
MKKFLLSTLCVISPFVYSSTEAVYLHYDEVLDGVTDFQKQLKLNIDLSGNTVIGKTEAGALISGNVENTNSQYIGSGEKPRFQFEIHNGETRNWYFGNVNGKYWEGVWFGANGEKGDFSLYTDLLTKEVPQFENIIAYYADEVFQLGGNNTHNSLNSSFLIDSDNLEPHFINDEYFDTSNGLFLQADVRDGNLPLSFYIDYKKPMPMKTFRLGSFNNGEGTRLRTFSFDIWKDGDWQTVENFEFAPIYAPTYQRQEFSLPRTVYAERIRISATATDDYTDGSKLLMWGLSFKR

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Crispr_ID: NC_010334_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010334_6

4385118-4385201

Unclear

Consensus_repeat	Method
CACAAATACCAAGACTAGCCATC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NC_010334_6

>merge|NC_010334|6|4385118-4385201|CRISPRCasFinder
CACAAATACCAAGACTAGCCATCGGTTTTTGTATTAGCGCCCTTGGTATAAATGTTCCAAACACAAATACCAAGACTAGCCATC

>NC_010334|6|6|4385118-4385201|CRISPRCasFinder
CACAAATACCAAGACTAGCCATC	GGTTTTTGTATTAGCGCCCTTGGTATAAATGTTCCAAA
CACAAATACCAAGACTAGCCATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010334.1\|WP_012278649.1\|4378659_4380399_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NC_010334.1\|WP_012278643.1\|4367907_4368588_+\|TIGR00153-family-protein	unknown	unknown	gnl\|CDD\|224310
NC_010334.1\|WP_012278654.1\|4387077_4387773_-\|DUF3313-domain-containing-protein	unknown	unknown	gnl\|CDD\|378712
NC_010334.1\|WP_012278662.1\|4394720_4395608_+\|phosphoribulokinase	unknown	unknown	gnl\|CDD\|237970
NC_010334.1\|WP_012278661.1\|4394313_4394568_+\|YheU-family-protein	unknown	unknown	gnl\|CDD\|377710
NC_010334.1\|WP_012278650.1\|4380395_4382192_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NC_010334.1\|WP_041416116.1\|4376685_4378566_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_010334.1\|WP_012278660.1\|4393339_4394320_+\|hydrolase	unknown	unknown	gnl\|CDD\|182883
NC_010334.1\|WP_012278651.1\|4382560_4382908_-\|DUF3622-domain-containing-protein	unknown	unknown	gnl\|CDD\|315050
NC_010334.1\|WP_012278653.1\|4385281_4386691_-\|ATP-dependent-RNA-helicase-DbpA	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236977
NC_010334.1\|WP_012278652.1\|4383597_4385076_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NC_010334.1\|WP_012278646.1\|4371157_4374352_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	unknown	unknown	gnl\|CDD\|237017
NC_010334.1\|WP_041416580.1\|4390327_4390783_+\|TIGR02444-family-protein	unknown	unknown	gnl\|CDD\|378196
NC_010334.1\|WP_012278647.1\|4374705_4376586_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_010334.1\|WP_086020060.1\|4387936_4388152_-\|YheV-family-putative-metal-binding-protein	unknown	unknown	gnl\|CDD\|131496
NC_010334.1\|WP_012278658.1\|4391009_4392605_-\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NC_010334.1\|WP_012278644.1\|4368612_4369881_+\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NC_010334.1\|WP_041416578.1\|4388308_4390219_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236729
NC_010334.1\|WP_083758346.1\|4370073_4370619_+\|TIGR04211-family-SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|275056
NC_010334.1\|WP_012278659.1\|4392653_4393172_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010334.1\|WP_012278649.1\|4378659_4380399_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_010334.1\|WP_012278643.1\|4367907_4368588_+\|TIGR00153-family-protein	gnl\|CDD\|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	1.54079e-66
NC_010334.1\|WP_012278654.1\|4387077_4387773_-\|DUF3313-domain-containing-protein	gnl\|CDD\|378712	pfam11769, DUF3313, Protein of unknown function (DUF3313). This a bacterial family of proteins which are annotated as putative lipoproteins.	4.22992e-33
NC_010334.1\|WP_012278662.1\|4394720_4395608_+\|phosphoribulokinase	gnl\|CDD\|237970	PRK15453, PRK15453, phosphoribulokinase; Provisional.	0
NC_010334.1\|WP_012278661.1\|4394313_4394568_+\|YheU-family-protein	gnl\|CDD\|377710	pfam06794, UPF0270, Uncharacterized protein family (UPF0270).	2.26956e-14
NC_010334.1\|WP_012278650.1\|4380395_4382192_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NC_010334.1\|WP_041416116.1\|4376685_4378566_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	6.22425e-65
NC_010334.1\|WP_012278660.1\|4393339_4394320_+\|hydrolase	gnl\|CDD\|182883	PRK10985, PRK10985, putative hydrolase; Provisional.	4.94565e-126
NC_010334.1\|WP_012278651.1\|4382560_4382908_-\|DUF3622-domain-containing-protein	gnl\|CDD\|315050	pfam12286, DUF3622, Protein of unknown function (DUF3622). This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.	7.67361e-24
NC_010334.1\|WP_012278653.1\|4385281_4386691_-\|ATP-dependent-RNA-helicase-DbpA	gnl\|CDD\|236977	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.	0
NC_010334.1\|WP_012278652.1\|4383597_4385076_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	0
NC_010334.1\|WP_012278646.1\|4371157_4374352_+\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	0
NC_010334.1\|WP_041416580.1\|4390327_4390783_+\|TIGR02444-family-protein	gnl\|CDD\|378196	pfam09523, DUF2390, Protein of unknown function (DUF2390). Members of this family are bacterial hypothetical proteins, about 160 amino acids in length, found in various proteobacteria, including members of the genera Pseudomonas and Vibrio. The C-terminal region is poorly conserved and is not included in the model.	9.30132e-25
NC_010334.1\|WP_012278647.1\|4374705_4376586_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	6.85629e-65
NC_010334.1\|WP_086020060.1\|4387936_4388152_-\|YheV-family-putative-metal-binding-protein	gnl\|CDD\|131496	TIGR02443, Hypothetical_protein_yheV., conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.	2.03876e-21
NC_010334.1\|WP_012278658.1\|4391009_4392605_-\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	7.76811e-59
NC_010334.1\|WP_012278644.1\|4368612_4369881_+\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	2.02642e-55
NC_010334.1\|WP_041416578.1\|4388308_4390219_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0
NC_010334.1\|WP_083758346.1\|4370073_4370619_+\|TIGR04211-family-SH3-domain-containing-protein	gnl\|CDD\|275056	TIGR04211, hypothetical_protein, SH3 domain protein. Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region.	6.11482e-48

>NC_010334.1|WP_012278652.1|4383597_4385076_+|DEAD/DEAH-box-helicase
MSFASLGLSAQILKAVANKGYDTPSPIQAQAIPAVLEGKDVMAAAQTGTGKTAGFTLPLLELLSKGTKAPAKQVRALVLTPTRELAAQIGESVEVYGQFLPLKSAVIFGGVGIGPQITKLNRGVDILVATPGRLLDLYNQRAVSFSQLEVLVLDEADRMLDMGFIHDIKKILAILPAKRQNLMFSATFSDDIRQLAKGLVNNPVEISVTPRNATANTVKQWICPVDHGQKVAVLIELIKQNDWQQVLVFSRTKHGANRLAKNLEAKGITAAAIHGNKSQGARTKALADFKSGAVRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGHAVSLVSSEEIKLLRDIELLIKQNLERRPVEGFEPTHSLPETDLTGKSHGQNKGPRNSGNQSRGNGRSRSPNSGGAGNKPPQRRQSNGQTNSQNSNDGAKTEHRDGQRSGEMARGHQPSPNSQPSKPRRQRRPNANNSNANRSANKPSQNS
>NC_010334.1|WP_012278651.1|4382560_4382908_-|DUF3622-domain-containing-protein
MTQTKKYDFRVVADGATWTGQITRRQTARKIVVSKSKKGFATEAEAQAWGETELKSFLENLIKRNERKAKAREERNEAADAKELAAEVWRSARDSAESSRDFDEDNSDYESDAER
>NC_010334.1|WP_012278650.1|4380395_4382192_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MDKTVEKKLTQWLKLQKKACGFYLNLSVFFGVLTGLSLMCQAWLIATVLQGIIIDDLPKSDFIEHFWALLLLTVVRGVLAFARERASFQAGARLRVQMRAAVLDKLALLGPAFIKGKPAGSWASIVLEQVEDLQDFYARYLPQVVLAGFIPLIILVAVFPINWAAGLILLATAPLIPMFMILVGMGAADANRKNFSALARLSGHFMDRLKGLSTLKLFNQGDKEAKVIKKASEEFRERTMAVLRMAFLSSAVLEFFAAVSIAVLAVYFGFSYLDHLNFGHYGVSISLFTGLFVLILAPEFYQPLRDMGTHYHAKAQAIGAAEELMALLDHPTEQQVGDKQINDKIEIEAKDLSVYSLDGSLLLGPVSFQIKANEHVAIVGPSGAGKTSLLNALLGFLPYQGQLKISGIELRELARDDWRKHLAWLGQEPQLFHGSLRDNVAMGRELSDEAIYNLLDKAQILDFVQQQPLGLAYPIQEQTAGLSVGQAQRIALARALGQQAKLFILDEPTASLDSLSEQAVQSTLTQAMQGVACVMVTHRLENLSAMDKVLVIDNGLIVQQGKYNELVTQLGTFKQMLDEATSLSEFDVGSAELMGDKS
>NC_010334.1|WP_012278649.1|4378659_4380399_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYIKRFKSQWFMMFIGLFLSVTTLMAGIGLLSLSGWFLSAAAVAGLTVLTAQTFNYFSPAGGVRFLSIVRTASRYGERLATHEATFSLLTDLRCWVWNKLLPLSAKNLQGVRHGDLLNRLVADIDTLDHLYLRLITPLAASLLMMLALYFFVGHFDPELARTLCSVLLAVWLLLPMSFYFLGRKPGIAQLETKRALRVQLLEYLQGQAELTLFGAQKVYRDRLNQAQSLMINSQNVMNRVTALSQACLILCHGFAVVLMLYLAASGVGSSVPPGPKLAMMVFLTMATIEMMMPLAGAFQHLSACTSAATRLNEVVEQTPSVTFKSSQTAEISAGNIEFNDIEFGYADNQAVLDGLNLKIPAGQKVALLGQTGCGKSSLLSLLTREWLPNKGQVCIDGLDASEYTEQQLRQSMSVVSQRIYLFSGSLRDNLALAIEGATRKDDDKLIAVLQKVGLQSLLQAEKPLDTWIGEGGRQLSGGEQRRIGVARALLRDAPILLLDEPTEGLDKRTEREILRLLFEFAEGKTMLMISHRLTAMNKMDAIHLMEQGAIRVSGNHSQLLSSDDYYASLYQRLG
>NC_010334.1|WP_041416116.1|4376685_4378566_+|methyl-accepting-chemotaxis-protein
MNLTIKHKIQLAVLVVIVTITTTLALIASKQLKLQTEQAISTRFALQSEALNNNIFSWLESKKHIIDANEARLRSGSSDDGEFTLSIQAGGFINLYMGLESGLVISGNKSVEIPADFDGRTRPWYQGAYNSHEIITTQPYVDLSGDTVVTLAKRFNGEINGVLAADLSIAYITQQVAAVNIANSGFAFLLDENNKVLAFRDGSYAQQDASRFARSLTHSNISTLQSSGDITTLEWQDGTEKLLRLTKLQGTDWTLGLVEDKALAYEAITEQIQQSLIAVIILAIMILIIASVIVNHMFKPLQQLTSAIETLSNGDGDLTQRFSAHRHDEIGMLERHMNRFLESLQLMIKAISNDTEQLIKQIHESSDIAVKASNGVNGQHQDLDQIATAIHEMSATAAEVANHAEMTANAAQVSTQACIDGNEVISKNSESIEQLSLQLDDASRVVSALEGNATEINKILSTIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSHRTQDSTEEIRAMIATLQQNSQQAVASMSSSTDIANTSVEFANQAKQSLMCITDSITEITDMATQIASAAEEQRAVSDDISRNTQAISDTSHLLSSQTQEVSDNAQQMLQTSSGLSERVSRFKI
>NC_010334.1|WP_012278647.1|4374705_4376586_+|methyl-accepting-chemotaxis-protein
MTLTIKHKIQLAVLVTILAISTTLATLSTRQLTQDTEMAISARFQLQAEAVSNNIFSWLEDKKRIVKANESRIKQGLDSDRELWLSINSGGFIDVYAGFDTGDIISGDKSQPWPDDYEPRSRPWYTQAYNSHEMIITPPYIDITGAAVVTLAQRFNGAMNGVIAADLSIGYITEQINNLQSQNAGFAFLLDENNKVLAFRDSSYAQQDASRLAQTLTPSNIDNIRNNGEINTIEWQDGKEKLIRLTHLKGTNWTLGLVEDKNLAYQMIEQQVINQLMVIAVLAFIILVIASFIVNQMFKPLQQLTDAIETLSKGDGDLTQRFAANKQDEIGLLEAHMNRFLESLQQMIKAISSDAEQLIKQIHESSDIASKASAGVNGQHQDVDQIATAIHEMSATASEVANHAEMTANAAQVSTLACVEGNEVIIKSSDSIELLSEQLGDASKVVSALEQNATEINQILSTIQAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRVLSHRTQDSTEEIRAMIATLQQNSQQAVSSMASSTDIAKSSVTFANQAKDSLERITNSITEISDMATQIASAAEEQRAVTEDISRNTQAISDTSNELSNQTQEVSDNAQMMLQTSGELSDRVSRFKI
>NC_010334.1|WP_012278646.1|4371157_4374352_+|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA
MEAITMFKASEVLAGHYDSANLDELFQVITNNYIVDEDEYLSELIKLVPSSDDEIQRVTKRAHDLVAKVRQYDKKGLMVGIDAFLQQYSLETQEGIILMCLAEALLRIPDAATADALIEDKLSGAKWDEHLSKSDSLLVNASTWGLMLTGKIVKLDQAVDGKPSSLLNRLVNKVGEPVIRQAMLAAMKIMGKQFVLGTCIKDGLKNSEANRKLGYSHSYDMLGEAALTKADADKYFTEYSSAIAALGALNYDETQAPRPTISIKLSALHPRYEVANEDRVLSELYDTLIKLIVQGRSLNVGISIDAEEMDRLELHLKLFKKLYNSEAAKGWGLLGIIVQTYAKRGLPVLCWLTRLAKDQGDEIPVRLVKGAYWDSELKWAQQNGEAGYSLFTRKAGTDVSYLASARYLLSDVTRGAIYPQFATHNAQSVAVIMDMAGDRLYEFQRLHGMGQELYDTLLAECPTTRIRIYAPIGEHKELLPYLVRRLLENGANTSFVHKLVDPKVPIESLVVHPLTTLKKYKTLSNNKIVQPADIFGPSRKNSKGLNMNIISESEPFFAALDKFKDATWNAGPLVNGETLAGETKEVVSPFDTTQVVGKIAFANNQAVEQALASAKAAFPNWCNTPVEVRASALQKLADLLEENREELIVLCTREAGKSIQDGIDEVREAVDFCRYYAIQAKKMMAKPELLPGPTGELNELFLQGRGIFVCISPWNFPLAIFIGQVAAALAAGNTVVAKPAEQTSIVGYRATQLAHEAGIPKEVLQFLPGTGATVGAAITADERIGGVCFTGSTGTAKLINRTLAMREGAIIPLIAETGGQNAMVVDSTSQPEQVVHDIIDSSFTSAGQRCSALRVLFLQEDIADRVLDVMQGAMEELSIGDPGLVKTDVGPVIDATAKANLNAHIDHIKQVGTLLNQLELPAGTENGHFVAPTAVEIDSIKVLDKEHFGPILHVIRYKASELDKVIDEINSTGFGLTLGIHSRNEGHALDLASRVNVGNVYINRNQIGAVVGVQPFGGQGLSGTGPKAGGPHYLTRFVTEKTRTNNITAIGGNATLLSLGDSEE
>NC_010334.1|WP_083758346.1|4370073_4370619_+|TIGR04211-family-SH3-domain-containing-protein
MLLSPSLLAANQTRYISDDVYIYLHGGPGTQFRILGSIEAGQQVTSLNETQGDFTKVVDHKDREGWIQTKMLSAKPSLRVQLPAIQAELKQTKAELETALSSSDSNAQELSQVKSQLATAQKALDSASNERDSAKAKLANIQKNERFEMWQQGGFIAIGGLLLGIILVYLPKPQRKPKNRW
>NC_010334.1|WP_012278644.1|4368612_4369881_+|inorganic-phosphate-transporter
MVDVLVTNGPWLIGIAALFGFLMAWGIGANDVANAMGTSVGSNAITIKQAIIIAMIFEFAGAYLAGGEVTNTIRNGIIDSSYFTQSPELLVYGMISALLAAGIWLIFASALGWPVSTTHSIVGAIVGFAAVGVGSDAVEWGKVGGIVGSWVVTPAISGFIAFIIFQSVQKLIFNTDNPLENAKRYVPFYMALAGFVMSLVTVKKGLKHVGLDFSNVEAYGLSLILAVLVGIGGMIAIKRLKMDSKADRQTQFGNVEKVFAILMVVTACCMAFAHGSNDVANAIGPLAAVVSVVESGGVISSKAPLVWWILPLGAVGIVLGLAIFGQRVMQTIGKNITHLTPSRGFAAELAAASTVVIASGTGLPISTTQTLVGAVLGVGMARGIAAINMGVVRNIVVSWVVTLPAGAALSIIFFFMIKGIFN
>NC_010334.1|WP_012278643.1|4367907_4368588_+|TIGR00153-family-protein
MPVNSILGVFAKSPIKPLQEHIDKVYDCASLLVPFFEATVAGDWDKAVQLRKQISFAEQEADSLKREIRLTLPGGLFMPVERTDLLELLTQQDKIANKAKDISGRVIGRQLELPQVIQEPFIAYLQRCIDAVSLSKEAINELDDLLETGFRGREVDLVAKMIAELDSIEEDTDDLQIKIRRQLFSIESELNPVDVMFLYKIIEWVGDLADLAERVGSRLELMLARV
>NC_010334.1|WP_012278653.1|4385281_4386691_-|ATP-dependent-RNA-helicase-DbpA
MTQSVPNTDGQAPFSSLNLKVELLDNLKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIMERMPIERQTLLFSATFPEQIQSIADKIMFKPVMVKVASSHATSTIEQHFYEVGNNNDRMRALKLLLLQYRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYSDEDGYKIALLEDYLERDIVNEALPPENLLDTFPVQPVMITLQIDGGKKQKLRPGDILGALTGEDGIEGSEVGKIKITDMRSYVAVNRKVAKKALHKITNGKLKGRSYRAWEMR
>NC_010334.1|WP_012278654.1|4387077_4387773_-|DUF3313-domain-containing-protein
MMVTRLFILSMTLLLTGCGVVQDYRNSQMFSSFDDFRPGPEGGSDLVWAQPGIKSLKDLNHILGQYDNVIVDQAWLVLDDKTRYDNLDDQDIVEVSHYLVSKIKNKASKRFNVIEQEQLSSDSAKTLRVSVALTNIETPNPILAVTSSLLPFGLGISSISKVVTGEHTNVGSATIELMISDAQTGKPIVAVIDRKAGSKDFSTMIDSTDDAKDAVDWWVERLGSTLRGEAL
>NC_010334.1|WP_086020060.1|4387936_4388152_-|YheV-family-putative-metal-binding-protein
MITTNTTKKVKKRFVAGAKCPKCQAKESIVLFKENGIETVECVECDYREQQTEKKVTKKATGAVIGVFNPD
>NC_010334.1|WP_041416578.1|4388308_4390219_+|ABC-transporter-ATP-binding-protein
MITITQAQLVRGSKTLLDETSLTVYPGHKVGLVGANGSGKSSLLALILGKISLDKGEFTMPSGWQMATVAQETPALDVAAIEYVIDGDSEYRELEAQLHAAQEADDGHKIALLHGKIDAIGGYAIHSRAASLLAGLGFSEQEQRNPVKSFSGGWRMRLNLAQALLCRSDLLLLDEPTNHLDLDTMYWLEGWIKAYQGTLILISHDRDFIDGIVDEIVHVENTKLNYYKGNYTSFERVRAERMAQQQVAFERQQKERAHMQSFVDRFRYKASKAKQAQSRLKALERMAELLPSQADSPFHMAFREPEALPNPLVTMEQVSIGYGETEILKKVHLNLVPGARIGLLGRNGAGKSTLVKLLSGELSPMKGKYETNPGLNIGYFAQHQLEFLSLDDSPLQHMVRLAPTTKEQELRNFLGGYGFNGDMALAPVRPFSGGEKARLVLALLVWQRPNLLLLDEPTNHLDLEMRHALTMALQTFEGAMIIVSHDRHLLRLSCSDYYLVDQGEVKSFEGDLDDYHQWLLDASKTAGKEEDSDASKPVQDKKQQKRLEAELRQKLSPLKKVQAKLEKEQQKANDRLKELEDMLADISLYDAENKATLTQVLADRTALTQGLEESEMEWLEIQEEIESIEQGVHAEI
>NC_010334.1|WP_041416580.1|4390327_4390783_+|TIGR02444-family-protein
MTSANNLPPNLWHDCDVIYEQHQSLCLQLQDDHQLNVNLLLLAIWLDKQHQRLTLAHWAQLQQDVFVWEQKLLLPYRKLRRLGKTSLNKEEYQQMLSLELMLERKSQAMILNALESMQLEQQTSTDTRDNLSHYLSLFDLDSHDYLSLRGH
>NC_010334.1|WP_012278658.1|4391009_4392605_-|GMC-family-oxidoreductase
MAIEDPIVIGLDSGWAHINASKLTENQSLEADVVIVGSGAGGGVAAEILTEAGLSVIIVEGGALKSSKDFVMEERVAYPDLYQQAAGMKTTDKAIGIFQGRAVGGSTTVNWTTSIRTPEPALEYWAKTKSVTGLSRSELDPWFEKMEQRLNISKWAYEPNRNNQALKQGCEQLGWDYTVIKRNVLGCWNTGYCGMGCPVNAKQSMLVTTIPAALERGATLVSQAQVIKLEYHNDKIFAVKAQAVDKKMKPLPVEVMFKAKHYILAAGAIHTPTIMLRSKLPDPHEVIGKRTFLHPTLLSGAVFSDPINGHSGAPQSIYSDEFVWQNSADGELGYKLEVPPIHPILIASKTIGYGKSHAHLMEKFNQLQVTIALVRDGYHENSQGGQVKLTEYGSTLDYPLTDAFWRAARRAYASMAELQFAAGAQQVLPISEGMPYLSSWKEAKKAIKDMELAPLKTVVASAHVMGGCPMGEDPKLSMVNSFGESHYFENLSVMDGSIFPTSLGANPQLSIYGITARNATRLAEKLKPKPN
>NC_010334.1|WP_012278659.1|4392653_4393172_-|hypothetical-protein
MERRTFITTALAGTACLALGVNYCSSDYVSVNKELDDKHRLLFSVLVPVFLDGALPDVATLKRDAINRTLDSIEHTISILPQESQAELEQLLEMLEGRLGLLILTGSMTPLMLRNQPELIEMLQSWRTSYMDMMVTAYQGLRELVLASYYSSPDHWSRLHYAKPTFLEDMNS
>NC_010334.1|WP_012278660.1|4393339_4394320_+|hydrolase
MSQIFSPPWWAKNPHIQTILPVLTKVDRPQLRRERLELSDGDFIDLDWQGSPRDEQPILVIIHGLEGSAQSHYARRMLAASKALNLCTVVHHHRSCSGELNRLPRGYHSGDTQDLQTSLSHLKTLHPNCRLLAVGYSLGGNVLVKYQGEQQDNSLIDRGVAVSAPLQLGSCANRLEKGFSKLYQSYLIKQLQQKMRGKVARPELAPLMPISQSEINRLTTFYAFDDKITAPLHGFADVHDYYTRASGLPYLSQITNPTLVMHAKDDPFMTHAVIPSQSQLSEQVQYELHENGGHVGFIDGGSPWRPQYYLEKRVLNFLTSLEISLC
>NC_010334.1|WP_012278661.1|4394313_4394568_+|YheU-family-protein
MLVPYESLTQLPSETFDNLIKEYLISQVEDGSFSGDGEHCMDKATIQCKAALKQGILVVEYNEEEESIGIRRKEDVVYQEVDSD
>NC_010334.1|WP_012278662.1|4394720_4395608_+|phosphoribulokinase
MSAKHPIIAVTGSSGAGTTTTTTAFNHIFRQLGINAAIVEGDSFHHFTRPEMAVMIRKEKTENRNISYFGPEANDFNRLEQCFGDYSNTGQGETRAYLHTFDEAVPFNQMPGTFTQWHPLPENTDMLYYEGLHGGVVTDGCDVAQHVDLLIGMVPIVNLEWIQKIIRDTSERGHSREKVMDSIVRSMDDYINHMTPQFSRTHINFQRVPTVDTSNPFSAKSIPTLDESFVVIRFRGIKNVDFPYYLRMIQGSFMSRVNTLVVPGGKMSLAMELILTPLVKDLMDKRLQLIAQEGE

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Crispr_ID: NC_010334_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010334_7

4915502-4915625

Orphan

Consensus_repeat	Method
CCCTTCATCTATAGTTGAAGATTAGAGTTCCTCTCTAACTGACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010334_7

>merge|NC_010334|7|4915502-4915625|CRISPRCasFinder
CCCTTCATCTATAGTTGAAGATTAGAGTTCCTCTCTAACTGACAACTAGTGGCTGCCGAGCATGAATCGATTTAGTAGCCCCTTCATCTATAGTTAAAGATTAGAGTTCCTCTCTAACTGACAA

>NC_010334|7|7|4915502-4915625|CRISPRCasFinder
CCCTTCATCTATAGTTGAAGATTAGAGTTCCTCTCTAACTGACAA	CTAGTGGCTGCCGAGCATGAATCGATTTAGTAGC
CCCTTCATCTATAGTTAAAGATTAGAGTTCCTCTCTAACTGACAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010334.1\|WP_012279088.1\|4912252_4912579_-\|multidrug-efflux-SMR-transporter	unknown	unknown	gnl\|CDD\|224987
NC_010334.1\|WP_012279086.1\|4909936_4911583_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274514
NC_010334.1\|WP_012279096.1\|4921005_4922097_+\|anaerobic-sulfatase-maturase	unknown	unknown	gnl\|CDD\|188457
NC_010334.1\|WP_012279101.1\|4926827_4928102_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226643
NC_010334.1\|WP_012279087.1\|4911708_4912128_-\|hypothetical-protein	unknown	unknown	unknown
NC_010334.1\|WP_012279094.1\|4918176_4919052_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176159
NC_010334.1\|WP_012279095.1\|4919335_4920544_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NC_010334.1\|WP_012279093.1\|4916700_4917852_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NC_010334.1\|WP_190273653.1\|4913812_4914928_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NC_010334.1\|WP_012279089.1\|4912817_4913657_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|178061
NC_010334.1\|WP_041416152.1\|4903762_4904818_+\|porin	unknown	unknown	gnl\|CDD\|238208
NC_010334.1\|WP_083758348.1\|4922253_4922886_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236922
NC_010334.1\|WP_041416634.1\|4916056_4916614_-\|S-(hydroxymethyl)glutathione-synthase	unknown	unknown	gnl\|CDD\|235451
NC_010334.1\|WP_012279083.1\|4905345_4907679_-\|YgiQ-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|234928
NC_010334.1\|WP_012279099.1\|4924846_4925851_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
NC_010334.1\|WP_012279100.1\|4925935_4926835_+\|proline/glycine-betaine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226644
NC_010334.1\|WP_012279091.1\|4915180_4915447_-\|DksA/TraR-family-C4-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|182903
NC_010334.1\|WP_012279085.1\|4908546_4909767_+\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|377697
NC_010334.1\|WP_012279082.1\|4904859_4905201_-\|DUF1232-domain-containing-protein	unknown	unknown	gnl\|CDD\|225876
NC_010334.1\|WP_012279098.1\|4922898_4924377_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293750

Protein	Function_ID	Function_description	E-value
NC_010334.1\|WP_012279088.1\|4912252_4912579_-\|multidrug-efflux-SMR-transporter	gnl\|CDD\|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	1.34262e-22
NC_010334.1\|WP_012279086.1\|4909936_4911583_+\|hypothetical-protein	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	2.42439e-05
NC_010334.1\|WP_012279101.1\|4926827_4928102_+\|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226643	COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism].	3.67511e-178
NC_010334.1\|WP_012279095.1\|4919335_4920544_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	1.312e-98
NC_010334.1\|WP_012279094.1\|4918176_4919052_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176159	cd08470, PBP2_CrgA_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 1. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.96983e-124
NC_010334.1\|WP_012279096.1\|4921005_4922097_+\|anaerobic-sulfatase-maturase	gnl\|CDD\|188457	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme. Members of this protein family are radical SAM family enzymes, maturases that prepare the oxygen-sensitive radical required in the active site of anaerobic sulfatases. This maturase role has led to many misleading legacy annotations suggesting that this enzyme maturase is instead a sulfatase regulatory protein. All members of the seed alignment are radical SAM enzymes encoded next to or near an anaerobic sulfatase. Note that a single genome may encode more than one sulfatase/maturase pair. [Protein fate, Protein modification and repair].	0
NC_010334.1\|WP_012279093.1\|4916700_4917852_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NC_010334.1\|WP_190273653.1\|4913812_4914928_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NC_010334.1\|WP_012279089.1\|4912817_4913657_-\|S-formylglutathione-hydrolase	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	9.49801e-143
NC_010334.1\|WP_041416152.1\|4903762_4904818_+\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	3.73766e-23
NC_010334.1\|WP_083758348.1\|4922253_4922886_+\|hypothetical-protein	gnl\|CDD\|236922	PRK11528, PRK11528, hypothetical protein; Provisional.	4.11313e-27
NC_010334.1\|WP_041416634.1\|4916056_4916614_-\|S-(hydroxymethyl)glutathione-synthase	gnl\|CDD\|235451	PRK05417, PRK05417, glutathione-dependent formaldehyde-activating enzyme; Provisional.	6.83405e-136
NC_010334.1\|WP_012279083.1\|4905345_4907679_-\|YgiQ-family-radical-SAM-protein	gnl\|CDD\|234928	PRK01254, PRK01254, YgiQ family radical SAM protein.	0
NC_010334.1\|WP_012279099.1\|4924846_4925851_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.29614e-112
NC_010334.1\|WP_012279100.1\|4925935_4926835_+\|proline/glycine-betaine-ABC-transporter-permease	gnl\|CDD\|226644	COG4176, ProW, ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism].	1.91638e-124
NC_010334.1\|WP_012279091.1\|4915180_4915447_-\|DksA/TraR-family-C4-type-zinc-finger-protein	gnl\|CDD\|182903	PRK11019, PRK11019, DksA/TraR family C4-type zinc finger protein.	1.66624e-56
NC_010334.1\|WP_012279085.1\|4908546_4909767_+\|threonine/serine-exporter-family-protein	gnl\|CDD\|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	4.08561e-62
NC_010334.1\|WP_012279082.1\|4904859_4905201_-\|DUF1232-domain-containing-protein	gnl\|CDD\|225876	COG3339, COG3339, Uncharacterized conserved protein [Function unknown].	3.06088e-18
NC_010334.1\|WP_012279098.1\|4922898_4924377_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293750	cd16026, GALNS_like, galactosamine-6-sulfatase; also known as N-acetylgalactosamine-6-sulfatase (GALNS). Lysosomal galactosamine-6-sulfatase removes sulfate groups from a terminal N-acetylgalactosamine-6-sulfate (or galactose-6-sulfate) in mucopolysaccharides such as keratan sulfate and chondroitin-6-sulfate. Defects in GALNS lead to accumulation of substrates, resulting in the development of the lysosomal storage disease mucopolysaccharidosis IV A.	2.24453e-109

>NC_010334.1|WP_012279091.1|4915180_4915447_-|DksA/TraR-family-C4-type-zinc-finger-protein
MAGGWSRDGAVQDQIDSSVEDAVATARSRLVGGVSLLHCEECGEEIPEARRIAVPGVRLCIHCQNELDSTQAKQHLFNRRGSKDSQLR
>NC_010334.1|WP_190273653.1|4913812_4914928_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MKSKAAVAWAVGEPLSMEIVDVMPPQKGEVRVKMIATGVCHTDAFTLSGDDPEGIFPCILGHEGGGIVESIGEGVTSVQVGDHVIPLYTPECGECKFCKSGKTNLCQKIRETQGKGLMPDGTSRFSKDGQIIYHYMGTSTFSEYTVLPEISLAKVNPEAPLEEVCLLGCGVTTGMGAVMNTAKVEEGATVAIFGMGGIGLSAVIGAAMAKASRIIAIDINESKFDLARKLGATDCINPKDYDKPIQDVIVELTDGGVDYSFECIGNVHVMRSALECCHKGWGESVVIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSELPDYVERYLAGEFKLSDFITHTMSLEQVNEAFDLMHEGKSIRTVIHFDK
>NC_010334.1|WP_012279089.1|4912817_4913657_-|S-formylglutathione-hydrolase
MTVENISVNKSFGGWHKQYSHHSKTLNCAMRFAIYLPPQASNGEKVPVLYWLSGLTCTDENFMQKAGAQRMAAELGIAIVAPDTSPRGDDVADDTGYDLGKGAGFYVNATQAPWNRHYRMYDYVVNELPRLIESMFPVSDKRSIAGHSMGGHGALVIAMRNPQVYQSVSAFSPITNPVNCPWGKKAFTAYLGRDTTTWTDYDASLLMRQATEFVPALVDQGEADDFLVEQLKPEVLEAAAKLSGYPLTLNMQEGFDHSYYFISSFIESHLRFHAEHLAK
>NC_010334.1|WP_012279088.1|4912252_4912579_-|multidrug-efflux-SMR-transporter
MSWIFLLLGVVAEALSHVALKATDGFSKPLPAALVLLGHLTAFVFLGQAMKGMPVGVVHALWAGLAIVTVTLLSALFYRQHLDMTAWVGMALVAAGVMMINFSQGHAH
>NC_010334.1|WP_012279087.1|4911708_4912128_-|hypothetical-protein
MRLLKLIPLLFIVVLAGCASSEASKEHAAMYTFPDLEQVNSIDNFRMDGWESVDRYSIIVDSRPRQSYLLILSGGLNGLNFAQGLLVTSTLGKVEAGFDSVSTLDDPMMKAQIKRIYKLKDKQQKNEIKAKIEAYDDDK
>NC_010334.1|WP_012279086.1|4909936_4911583_+|hypothetical-protein
MGRVFSLALAIIFSIQVGAASAENKSKTSDNKRPEDYEQKKQTKNIVIKSNDIFDLSDPETFFIHRWANYLHINTRDLVIRDKLSFSEGNKVSQKDLEEAQRILRSQAYIRDARVTFSQPAADADLADEGENILVETWDNWSLLPTFSASHSGGESKFSIGLKEDNLLGYGIRTRIKYQSDTDRTGYKFAVEAPVNFIKHATIAASFYDNSDGQAKYLYFNKPFYSLDGSHMYSAEYLDDLRVDTLKQNGQDINEFEHAEAYNNARFGWLIERDSQSLSRIITGITQDRHEFAHVDNYPSSQLPQDRDFLYPWVAYQYLQDDFKVLNNVHLINYNEDFNLGWQHYFKLGIETRDLNNSSPVGYHLGWKSSRGYQGDEQLILLEMDAKGVFATSQKDFYQVNLVAEYFYHITPKWTAYSKLRLSTSQNNYLDEPFALGDETGIRGYPNDYQYGDHQWAFTAELRNYPNINLYQLAELGWALFTDVGHAFGGSDENNAVSSPIGSVGIGARIYSSKSSYGNVAHIDLSVPYTSGVEVNSWEWRFQVKSHF
>NC_010334.1|WP_012279085.1|4908546_4909767_+|threonine/serine-exporter-family-protein
MDNQEFLEKRRFIIRLGKALHKFGTPAYRLEAHLQGVSHVLGIEGYFLISPTAMTFVLQHDEDQEYNHVARVKPGELDLGSLARTDELVEELMSGQRTLSEALERLEEISNKPNPYGTKLTLLAFGISAGAFAMLMGTSWNDVFWSGMLGLMVYGLVFSAERSKSMAEMLEPLAAILCAIAAFAIARIDPSVNVPVVILSGIIIFIPGLALTLGLAELAARDLISGTARVMDAFMLLFKLYFGVILGMAIGKALFDETTYIPPAVLPQWAVFISVPILSMALVIIFKARMKDSPWGILAGTVAFFSAMLGGLYFGESIGIFFGALAVGIYSNLFARWMKAPASIALLQGIVILVPGSKTYIGLNTLILGETIFNQSHLGIQIFLIFMSIVAGLIFANVAVPPRRTL
>NC_010334.1|WP_012279083.1|4905345_4907679_-|YgiQ-family-radical-SAM-protein
MQVESTLFTFPKYRPELTRPAPFLPMSRKEMAKLGWDSCDIIIVTGDAYVDHPSFGMAVIGRMLEAQGFRVGIISQPDWSNKEDFMKLGKPNLYFGVTAGNMDSMINRYTAERRMRHDDAYTAGNIGGKRPDRAVTVYTQRCKEAFKQVPVVIGGIEASLRRIAHYDYWSDKVRRSVVLDAKADILIYGNAERPLVELSHRLAAGEPMSQLHDIRGTAVIRNEPLPEWKGVDSRKLDQLHKIDPIPNPYGADDVGCKNLSGPTDEKIFDNDAPKAISVQPPRPKPWEKTYVMLPSYEKVLEDKYLYAHASRILHQEQNPGCARALFQKHAERAVWVNPPAWPLNTDEMDGVFDLAYQRVPHPSYGKEKIPAYDMIKASINIMRGCFGGCSFCSITEHEGRIIQSRSQESIVKEIKDIQQKVPGFTGVISDLGGPTANMYHLGCTSEKAESTCRRQSCIYPSICGHMDTDHQPTIDLYRAARDVPGIKKVLIASGVRYDLATEDPRYVKELATHHVGGYLKIAPEHTEEGPLNKMMKPGMGTYDKFKTLFDKYSQEAGKKQYLIPYFISAHPGTTNEDMVNLALWLKAEKFKLDQVQNFYPSPMANATTIYHTELNSLKNVKHDSEQVTVPKKGRQRKLHKALLRYHDSAGWPLIREALIEMGKEKLIGNGPSCLVPVETRQEREANRANSKTSNAKDDGKGKKAFTRFSGDQFDDRKSGQNKSSQNKSGQKKSGGNKAGQGKPDQNRSGQGAKTGAKPTGKRPPKKNAWGTTPKHQR
>NC_010334.1|WP_012279082.1|4904859_4905201_-|DUF1232-domain-containing-protein
MTQETNDTNEYSDESFWQKVKLFAKKAGREVIDNALCLYYAAKRPDTPKWAKTVIFGALAYFIAPIDAIPDLTPILGYTDDLGALAAALAMVSMYVDDNVKNQAAEKSAAWFD
>NC_010334.1|WP_041416152.1|4903762_4904818_+|porin
MKTLKTLIAVTISLCSYNAYADDNGDLETRIAKLENNASPSQFKNSQVSLYGSIRPTLSYLDNGQENSWDVRDALSRVGIMASTEFADGWSAIAHGEWSVDIANSGNFGKARQAYAAIASPYGQVGIGKQRPAQYTLVAEYVDIFNHGNSPYAYDYDNPFFVDNFVTYKLVTGGFTWMAGAQVDGDSGESGTDIVNVGVGYDLQRLHIGLGYISQNTLDSNDIEGDNQTLGGVVAYTFSNDLYLAASYQEKQYNYDAGSMNKDRSGSTLDTALAYPFSDDYTVKLGYFMFKDGIDDNTSADYNGFNTTLEWNPVANVRVHLEYLDKNFDNREDDRAVTIGFKYDFNLTWRD
>NC_010334.1|WP_041416634.1|4916056_4916614_-|S-(hydroxymethyl)glutathione-synthase
MKTLIHPQVDNGFPATAESFAGGSLQCQCANNPIEVTIAAQTAHNHVCGCSKCWKPEGALFAQIAVVSKDKVSVTANADKLQIIDESAAIQRHACKECGTHMYGRIENTGHPFYGLDFVHTELSKQQGWSAPEFAAFVSSIIESGTAPEAMADVRQTLKDLGLPPYDCLSPALMDAIATHVAANK
>NC_010334.1|WP_012279093.1|4916700_4917852_-|iron-containing-alcohol-dehydrogenase
MSTTFYMPPMSMMGPDAIKQLGSELNARNFHKALIVTDKALVDIKLVDRLTEELSAHNIAFAIFDGVKPNPTENNIEQGLKLLSAEDCDLVISFGGGSSHDCAKGIALVATNGGHIRDYSKGVHLSTKPQLPLVTVNTTAGTASEMTIFAIVTNEKDETKYPVVDKNLTPIIAVNDSELMVAMPKFLTAATGMDALTHAVEAYVSTAATPITDASAIKAIELISSNLEAVVDNGENREARDAMQYGEFLAGMAFSNASLGYVHSMAHQLGGVYDLVHGLCNAILLPHVSRFNAALSTERFADIAKAMGVDSTGMNVAEAAEAGILAIEALSESVGTAQKLSDLGVKQDKLEFMAINALNDACSLTNPRKASTEEIINIFNQAM
>NC_010334.1|WP_012279094.1|4918176_4919052_+|LysR-family-transcriptional-regulator
MFNWEGVSEFVAVAEAESFTKASQRLGISTAQVSRQISALETRLASKLFHRTTRKVSVTEVGRIYYQHCRQVLDGLEEAERAITNLQTTPRGLLKITAPVTYGEKTIAPLINDFVVQYPELEVKLNLSNQKVDLIDEGYDLAIRLGHLEDSSMMAKKLSSRTQYVCASPSYISTYGIPHSLSELEQHNCLMGTMDYWRFQENGKTRNVRVRGTLSCNSGHALVDAAIKGIGIVQLPDYYVDPFIEDGQLVTLLEQNRQPEEGIWALYPQNRHLSPKVRMLLEHLSNALKQA
>NC_010334.1|WP_012279095.1|4919335_4920544_+|NAD(P)/FAD-dependent-oxidoreductase
MSRIVIVGGGAAGLEIASLLGRSVNSQDEVILVEGETHHYWKPRFHEIAAGTFDSDLDSLCYFSHGAKNGYMHYQAWMTDINRATKKLAVRKPNGEMDTLDYDYLIIAIGAISNDFATQGAKEHCLFLDTSAQARDSWHQISSLLRSGKDCTINIVGAGATGLELAAELAKVSAELSDNPYAAWLNINLIEAADRVLPNGPVKMSEQALLRLEKYKINVMLNTRIASVEADRMTTSDGQVLNADVQFWAAGIKAPDWLKEIGGLQSNSLNQLVVEQTLATTFDSSIFALGDCAAIPQADGSQVPPKAQAANRAAVHLAKSLVAHLSGKPLKPFVYNDGGMVVAIGHNFAISTMMNDRLILKGRLVRRLYDTIFRLHQKTVSGYLAMSRLIIFKRLKCLFKPA
>NC_010334.1|WP_012279096.1|4921005_4922097_+|anaerobic-sulfatase-maturase
MSIDVFTVMAKPVSDKCNLKCSYCFYLGTADQLNHQPSNLMTDEVLRDFTKKYIEQSNTPSVNFVWQGGEPTLAGLDFFQKAIKFQQEFAGEKEISNSLQTNGIALNRQWMKFLKEHNFLVGISIDGTQTAHDKYRISINGSPTYERVKQAIALLNEFKIEYNALCTINSSNWNKGKTVYSNLKQMGVRYMQFIPIVVFDKKNKVAPFTLPQKGFGTFLVDVFNEWAKQDINYTFIMNFESILSSYVNNHPLICFHNKQCGSPLVIESNGEVYSCDHFVTDQFRIGNIETQNFTEMAQSDKHQKFQELRSITKECQRCEYLSLCNGGCPKHSLPDGSNYLCPSYKLLFKHTKEPVKIIINNLL
>NC_010334.1|WP_083758348.1|4922253_4922886_+|hypothetical-protein
MGLEDVGRGDLLKIFADYGAIHKGYEYYGFLEYNRFDHPDDTRNQVFTANTHIRLFDSNFTAFGKFYAQYENNPKFSDDVSTILGMGYLGYSSKAGFFKPFVGAHIMSGDVKSTSTGESSNGMNGVMVGWVGAYHLSPQFSLTNWNEFEIARNDAYAEQQHGDFGINGGLTLSYKPTKHFVADVTYRYFYNKLAVEGYGDQIIFMAGYKF
>NC_010334.1|WP_012279098.1|4922898_4924377_+|sulfatase-like-hydrolase/transferase
MKKTLLASAIVLASLSTNVSAAQTTVTDKPNVVIFYVDDLGYGDLATYGHNIVKTPNIDKLAAEGIKFTQYYSPAPLCSPSRAGMLTGRTPYRTGIRSWIPDGQNVHIGKEEITLAHMLKDEGYDTAITGKLHLNGGAHMKDHPQASDLGFEHSFIIPGGWAKNAKTEAKNADGSLRHGKIHVDNFWRNGVPVGETDQFSADLVANEAIGWLDDQGGDKPFFLYVPFSEVHTPIASPQKYLDMYGDYLTDFAKENPDLFHWDWVNQPYRGQGEYFANITYMDAQLGRVIDKLKAMGEYDNTIILFSSDNGPVTREARKPYELNMAGETGGLRGRKDNLFEGGIRVPMIMKYHGHVKAETDSDEPIYGLDIVPTLSELIGFDTPSDRTIDGVSFVSTFNGLSVERTKPMIWTIDMPYQDDAINEYAVRIGDFKLIIDRQGNNKYLFNIGQDKYEVYNLLNKPEYKAKVEELTTAYQAYRKDIENDNILNKGKK
>NC_010334.1|WP_012279099.1|4924846_4925851_+|ABC-transporter-substrate-binding-protein
MKRILLIGGLLLSGVTHQALADEQCGKVTIADMNWSSASLIANVDRFILEHGYGCEAELTPGDTMPTSTSMVEKGEPDIAPEIWSNSVKELIEQAVTDKRLVIAGKSLSDGGEEGFWVPQYMVDKDPSLKTIQGVIANVKAFEHPEDPERGAFYGCPAGWGCQLSAENLFRALKLSDAGFDLIDPGSGAGLAGSIARAYERQQPWFGYYWAPTAVLGKYKMVKVDFGSGVDAKEFSDCISQAECADPKVTMYPAALVQTITTAEFAKKSTSAFEYLGKRALTNAQMNSLLAWMEDNQADGTIAAEHFLINHQDIWLEWVPTNVATKVKLAIADL
>NC_010334.1|WP_012279100.1|4925935_4926835_+|proline/glycine-betaine-ABC-transporter-permease
MADFSWLSKFPKMDRSTLLEIRKYLDGAFRDFSREYGELIESFFDPLLDFLIWFEKLLVQSPWWAVLLCITTLVYFASRSWKLSLGVVISFLLIGYFGMWEDTMRTLSIITVCTLLAITLGVPIGILMSRSNRTQALVTPILDVMQTMPAFVYLIPVVMLLGIGKVPGVIAVVIYAIPPVIRLTNLGIRLVDKEVLEAATAYGANRMQRLMGVQLPLASPTIMAGINQTIMMALGMVVIASMIGVKGLGQPVLKSITNQYFTLGLFNGLAIVALAIIFDRTSQAYAKRSQKHMRGGQHD
>NC_010334.1|WP_012279101.1|4926827_4928102_+|glycine-betaine/L-proline-ABC-transporter-ATP-binding-protein
MTNDAQIQPLIQIRDLFKVFGSKPNTVMPLVREGLSKDEILAKTGHTVGLKAINLDIKKGEIFVIMGLSGSGKSTLIRHFNRLIDPTEGQILVEGLDVMKLNTKQLEQFRRSKMAMVFQRFGLMPHRTVLENVGYGLSVQGVDKAARNAKAKQWLETVGLSGYEAQYPSQLSGGQQQRVGLARALCTDAEILLMDEAFSALDPLIRSEMQDQLIELQKELHKTIIFITHDLDEALRIGDRIAILKDGELVQVGEPVDILLNPADDYVEAFVKDVNRPRALTVETVMKPPAFRLTADTIGEALKQMKRIPANYAYYVTDEGFQGLVCQEALEDAVKADEQALMEDFEVEPLTPISQDALLESIIPATMESDYPLPVVDADGDLQGELSRTHLAGVLSDFYSDDADSTDKINSTDLQKSNLTNKDK

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Crispr_ID: NC_010334_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010334_8

5122185-5122291

Orphan

Consensus_repeat	Method
GAATGATTGAGATTGGCAGGCTTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010334_8

>merge|NC_010334|8|5122185-5122291|CRISPRCasFinder
GAATGATTGAGATTGGCAGGCTTCCAAACAGCCGAGCAGCACAGGCTCTCATTAACTACCTCAAACTAGCACGAGGATAATCGAATGATTGAGATTGGCAGGCTTCC

>NC_010334|8|8|5122185-5122291|CRISPRCasFinder
GAATGATTGAGATTGGCAGGCTTCC	AAACAGCCGAGCAGCACAGGCTCTCATTAACTACCTCAAACTAGCACGAGGATAATC
GAATGATTGAGATTGGCAGGCTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010334.1\|WP_012279257.1\|5117090_5118356_-\|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
NC_010334.1\|WP_012279261.1\|5121857_5122166_+\|thiosulfate-sulfurtransferase-GlpE	unknown	unknown	gnl\|CDD\|178908
NC_010334.1\|WP_012279254.1\|5113943_5115029_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223928
NC_010334.1\|WP_012279253.1\|5112861_5113947_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340839
NC_010334.1\|WP_012279272.1\|5135599_5136574_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|182697
NC_010334.1\|WP_012279263.1\|5123193_5123850_-\|isoprenoid-biosynthesis-glyoxalase-ElbB	unknown	unknown	gnl\|CDD\|236980
NC_010334.1\|WP_083758332.1\|5111764_5112775_-\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|224799
NC_010334.1\|WP_012279255.1\|5115087_5116173_-\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|340821
NC_010334.1\|WP_012279264.1\|5124237_5126994_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NC_010334.1\|WP_012279271.1\|5133667_5135455_+\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577
NC_010334.1\|WP_012279260.1\|5120703_5121729_+\|L-threonine-3-dehydrogenase	unknown	unknown	gnl\|CDD\|180054
NC_010334.1\|WP_012279269.1\|5131407_5131875_+\|DUF2489-domain-containing-protein	unknown	unknown	gnl\|CDD\|378470
NC_010334.1\|WP_012279256.1\|5116258_5116990_+\|3-deoxy-D-manno-octulosonic-acid-kinase	unknown	unknown	gnl\|CDD\|234975
NC_010334.1\|WP_012279265.1\|5127765_5128446_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NC_010334.1\|WP_012279259.1\|5119421_5120618_+\|glycine-C-acetyltransferase	unknown	unknown	gnl\|CDD\|235893
NC_010334.1\|WP_083758350.1\|5132128_5133505_+\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|236430
NC_010334.1\|WP_012279266.1\|5128615_5129236_+\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NC_010334.1\|WP_012279258.1\|5118532_5119174_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379407
NC_010334.1\|WP_012279267.1\|5130060_5130729_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|372616
NC_010334.1\|WP_012279268.1\|5130781_5131318_+\|Der-GTPase-activating-protein-YihI	unknown	unknown	gnl\|CDD\|235370

Protein	Function_ID	Function_description	E-value
NC_010334.1\|WP_012279257.1\|5117090_5118356_-\|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0
NC_010334.1\|WP_012279261.1\|5121857_5122166_+\|thiosulfate-sulfurtransferase-GlpE	gnl\|CDD\|178908	PRK00162, glpE, thiosulfate sulfurtransferase GlpE.	2.57444e-39
NC_010334.1\|WP_012279254.1\|5113943_5115029_-\|hypothetical-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	0.00605848
NC_010334.1\|WP_012279253.1\|5112861_5113947_-\|glycosyltransferase	gnl\|CDD\|340839	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.	3.16252e-89
NC_010334.1\|WP_012279272.1\|5135599_5136574_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|182697	PRK10749, PRK10749, lysophospholipase L2; Provisional.	8.72507e-93
NC_010334.1\|WP_012279263.1\|5123193_5123850_-\|isoprenoid-biosynthesis-glyoxalase-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	5.58407e-141
NC_010334.1\|WP_083758332.1\|5111764_5112775_-\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|224799	COG1887, TagB, Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane].	7.63217e-20
NC_010334.1\|WP_012279255.1\|5115087_5116173_-\|glycosyltransferase-family-9-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	2.99899e-70
NC_010334.1\|WP_012279264.1\|5124237_5126994_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NC_010334.1\|WP_012279271.1\|5133667_5135455_+\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0
NC_010334.1\|WP_012279260.1\|5120703_5121729_+\|L-threonine-3-dehydrogenase	gnl\|CDD\|180054	PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.	0
NC_010334.1\|WP_012279269.1\|5131407_5131875_+\|DUF2489-domain-containing-protein	gnl\|CDD\|378470	pfam10675, DUF2489, Protein of unknown function (DUF2489). This is a bacterial family of uncharacterized proteins.	4.95952e-42
NC_010334.1\|WP_012279256.1\|5116258_5116990_+\|3-deoxy-D-manno-octulosonic-acid-kinase	gnl\|CDD\|234975	PRK01723, PRK01723, 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed.	6.73903e-142
NC_010334.1\|WP_012279265.1\|5127765_5128446_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.04646e-104
NC_010334.1\|WP_012279259.1\|5119421_5120618_+\|glycine-C-acetyltransferase	gnl\|CDD\|235893	PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional.	0
NC_010334.1\|WP_083758350.1\|5132128_5133505_+\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|236430	PRK09249, PRK09249, coproporphyrinogen dehydrogenase.	0
NC_010334.1\|WP_012279266.1\|5128615_5129236_+\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	3.58711e-31
NC_010334.1\|WP_012279258.1\|5118532_5119174_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379407	pfam13972, TetR, Bacterial transcriptional repressor. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The regulatory network in which TetR itself is involved is in being released in the presence of tetracycline, binding to the target operator, and repressing tetA transcription.	2.40357e-44
NC_010334.1\|WP_012279267.1\|5130060_5130729_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|372616	pfam13489, Methyltransf_23, Methyltransferase domain. This family appears to be a methyltransferase domain.	7.42454e-11
NC_010334.1\|WP_012279268.1\|5130781_5131318_+\|Der-GTPase-activating-protein-YihI	gnl\|CDD\|235370	PRK05244, PRK05244, Der GTPase-activating protein YihI.	3.16583e-51

>NC_010334.1|WP_012279261.1|5121857_5122166_+|thiosulfate-sulfurtransferase-GlpE
MSAFQHLSVSELIQMQQTSAELQIVDIRDAASYEAGHIDGAFNLNNENLAHYIGDADMDLPIVVVCYHGNSSQSAAAYLNEQGFDDVYSLDGGYSAWHLAHL
>NC_010334.1|WP_012279260.1|5120703_5121729_+|L-threonine-3-dehydrogenase
MKALSKLKPEEGIWMVDAPKPEVGHNDLLIKIRKTAICGTDVHIYNWDEWSQNTIPVPMVVGHEYVGEVVGMGQEVRGFTIGDRVSGEGHITCGHCRNCRGGRTHLCRNTSGVGVNREGAFAEYLVIPAFNAFKIPDDISDDLASIFDPFGNAVHTALSFDLVGEDVLITGAGPIGIMAAAVCRHVGARHVVITDVNEYRLELAQKMGATRAVNVAKEKLEDVMQELGMTEGFDVGLEMSGVPSAFHSMLDTMNHGGKIAMLGIPGGEMAIDWSKVIFKGLIIKGIYGREMFETWYKMASLIQSGLDISPIITHHFSIDEFQQGFDAMRSGQSGKVILNWD
>NC_010334.1|WP_012279259.1|5119421_5120618_+|glycine-C-acetyltransferase
MPKTSFYDQINQQLADVKAEGLYKSERIIVSPQQTAIEVNGDQVINFCANNYLGLANHPELIKAAQAGLNAHGFGMASVRFICGTQDIHKTLEASLSAFLGMEDTILYSSCFDANAGLFETLLSAEDAIISDALNHASIIDGVRLCKAKRFRYANNDMADLEAQLIAAKEAGARNIMIATDGVFSMDGVIANLKGVCDLADKYGALVMVDDSHAVGFVGQEGRGTHEYCEVMDRVDIITGTLGKALGGASGGFTSGKKEVIDWLRQRSRPYLFSNSLAPSIVTASIHVLEMLKSGQALREAVWENSRYFREQMSAAGFTLGGADHAIIPVMIGDAKLAGDFANRLLTENIYVIGFSFPVVPKGQARIRTQMSAAHTKEQIDKAIEAFTRIAKEMGIIG
>NC_010334.1|WP_012279258.1|5118532_5119174_+|TetR/AcrR-family-transcriptional-regulator
MKTRDKIVQASLELFNEHGERAITTNHIAAHLNISPGNLYYHFRNKEDIIRSIFSLYEQHLESGFQPYVDKEVDVDLLVGYFDAMFYTLWQFRFMYANLADILSRDEALKNRYLKAQQDVLARSTGVLEKLNQDGFLAINPEDLKPLADTIKMLVSFWISYKLTQTQSNIGSITKESLYEGLLRVIMLFKSYATPSSQATFLRLEEHYRSQML
>NC_010334.1|WP_012279257.1|5117090_5118356_-|lipid-IV(A)-3-deoxy-D-manno-octulosonic-acid-transferase
MNRSLYSLALYLISPLLLVYLAVRAFKSKDYRGRWNERFGLKSLKQTDLLVHSVSMGETLAAIPLIKQIQLQHPQLSITITTTSPTGSAEVARAFGNSVQHCYLPFDLAWCAKRFVKQVAPKCCIIMETELWPNLIHYLKQAGTQVLLANARLSQKSADSYRKHHKLTTPMLKLLDGIAAQSQQAAERFIALGVAPERVTVCGSLKFDINIDKQRIDTAIKLRAQWLATDKPVWVAGSVHPGEFDALIMAHQQLLAKYPNAMMVMVPRHPEQFDAAAQAIKSAGLTLIRRSMAKPVLPETQVVLGNTMGELLTFYGAADQAFVGGSIIVHGGHNPLEPAAMGLPVMMGPHYRDFNEITQLLESAGALKVVDSAEALAERLIYLFDDKAAYNQASAAARAVVEQNRGSLTKQLEVVESFING
>NC_010334.1|WP_012279256.1|5116258_5116990_+|3-deoxy-D-manno-octulosonic-acid-kinase
MKFKKTAKGSIAYCQHTPSDIEPNWFGADFWRQQSAITGSSKGRYTTWFVDASRVASEQNQWVLRHYYRGGLIEKISRDQYLFTGLEKTRAVAELALLETLFDQGFAVPKPIAANVERSGLFYRADLIIERVEGAEDLVARLSKSSMSELQWQTLGEAIAEFHNHGVYHADLNAKNILICADKFYLIDFDRGELRKPNAQWQQANMSRLLRSFRKELSKLANLAFAEENWQQLHQAYQAKLNQ
>NC_010334.1|WP_012279255.1|5115087_5116173_-|glycosyltransferase-family-9-protein
MSLSTSSDHQNPKSSSIDLSNAESLCLLRLSAIGDVCHAVAMVQAIQRRYPQLKITWILGKVEYQLLKHLEGVEFVIFDKSQGWRSYFNLKRALKGRKFDVLLHMQIALRATIASLAISAKVRIGFDRFRAKEGQWLVTNHAIEPQATPHVLEGFMGFAKAVGVTDLTPSWSIPVPVADTEFAKALIPDGSRVLVICAAASKAERNWLPERYAAVADYAVAKGYRVILCGGPTPLERELAEKIQAAAKSELENQVGKTSLLQLLAVLKQASVVLAPDTGPAHMAVTQGTPVIGLYAHSNPGRTGPYTCLDSVVSVYEQVIAEQKQGDIPWGTRAKGEHLMELIDVDKVITQLDLLLRHPQA
>NC_010334.1|WP_012279254.1|5113943_5115029_-|hypothetical-protein
MTLAAPKFLFVPVSSAEGVGEYMRSLIIADEVKRRWPNATIQFILSRQAPYALTCPYPAALLDDTPTKNIKAVNDFMSFFLPDFVIFDASGRRSQLVHANKLGAKVIFLSQHKRKRSRGMKVLRARVTDSHWVVQPEFVIGPINWLDRLKLKLIDKPEPTVTGPIFVNPNRDSQAALLKQYDLTAGGFILFNAGSGGHTNSHGYIVEEFARAAANIYRATQLPCVVVYGPNYPNAMPVVEGVTAIKELNHCELIDLLDAAKVAILSGGDTLLQAIALKIPTLAVAVAKDQNYRLKVCKENGLTVGSDNDARQMSGGLIELIKAENLGRLEAALAQCECINGLDIGMNIITDLYRKKFGVSQ
>NC_010334.1|WP_012279253.1|5112861_5113947_-|glycosyltransferase
MRIAIAIDSLAGGGAEKVMLTLAKEFTEMGHEPHFLVMTDSVAFDIPNGLPVHVCFASKDRDLKRSWHLAPAVKKLTNKIRSIEQEVGKFDLVLSNLDKTNRLMVKTKVSPLFVVVHASVEEELTRHAKLGPFAYLKKLWAKKALNGQHLVTVSEGIANEILQTKRIEPTSIRCIYNPFEFEDINALSQQESQGIPDSDYLIHIGRYVKQKRHDVLFQSISQMESQIPVVLLCHNPKKALKAAKKFGVGHRVIIPGFQSNPFPWIKNAKALVLSSDFEGLPTVLIESLACGTPVVSTDCPHGPKEIMTGELARFLVPRRDPKALASKLDEVLLSPPSLAEVDILAKVQAARIAQEYLALVK
>NC_010334.1|WP_083758332.1|5111764_5112775_-|CDP-glycerol-glycerophosphotransferase-family-protein
MLRPLQAAIWARGDEARWFLEGNEVDPAFLNAAEKRLLTIEEVKSWQPDAVFVPGNVVPRFIPGIKVGVFHGFNAGKMNHRGREDHFEIRDCFDLYCTQGPATTLPFERLAEKFGTFKVAETGWPTLDPMFQQGLERPYDIEGDDRPVVLFCSTFSRSLSCAPVVYEKIKALSEQGNWRWLVQFHPKMSQDIVDKYKALESENLTFIETDNVLPLLKAADVMLCDTSSILIMFLLQGKPVVTFNNQTNRSHLVNVEALEDIEPALEKVLSHPPELMAEIEHYCDDIHPFRDGQSSERVLAATDKLIENGIDDLKPKPMNLLRHLKMRKKLGYWKFN
>NC_010334.1|WP_012279263.1|5123193_5123850_-|isoprenoid-biosynthesis-glyoxalase-ElbB
MKKIAVLLSGCGVYDGTELHESVLALLEITKSGASYQCFAPNIPQYHVVSHLTGEVQENETRNVLVESARIARGDIKAVDELNIAEFDALVIPGGFGAAKNLCDFAVTEAEYSVEPSVERFISQFASAHKPVGFICISPIMIPKLYGHGVSGTIGSDEATAAAFEQQGGQHHAVSVHDIVVDEKHKVVSTPAYMLANDIVEAHSGISKLVEKVLQMAE
>NC_010334.1|WP_012279264.1|5124237_5126994_+|DNA-polymerase-I
MPKIADNPLILVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVINMLRSLLNQYKPTQMAVVFDAKGKTFRNEMYSEYKAQRPPMPDDLRNQIEPLHRIIKALGLPLVCISGVEADDVIGTIATQASKEGRAVLISTGDKDMAQLVDDNITLINTMTNTIMGPAEVTEKFGVGPERIIDLLALQGDKADNIPGLPGVGEKTALAMLTGVGSVANILAAPEKMPELGFRGSKTMPAKIIEHADMLKLSYELATIKLDVELEQDWHQLSIEPANKDELIKCYGEMEFKRWLAEVLDNKGDKATAAESEDDAPAAKLDIEVEYDIILTLEQLDRWIEKLKSAELIAIDTETTSLNYMEAKLVGISFAVEAGKAAYLPLAHDYIDAPEQLDKAVVFEKLQPLLEDENLKKVGQNLKYDISIFANAGICLLGVQFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQISLETAAPYAAEDADITLRLHQHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQGVLIDSMLLGQQSEELARKIDELEHKAHEIAGQAFNLSSPKQLQELFFEKLGYPVIKKTPKGAPSTAEEVLVELALDYPLPKIILEHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANAATGRLSSSEPNLQNIPIRTEEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRSEAQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINIANWIETETDGEIIMIMQVHDELVFEVDEAKADSLQAKVCELMAAAAKLDVELLAEAGIGDNWEQAH
>NC_010334.1|WP_012279265.1|5127765_5128446_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MSESRIDFRKAEFLISAPDIAHLNEYLPGDVGVEIAFAGRSNAGKSSALNLLTEQKIARTSKTPGRTQLINVFKLDKHRRLVDLPGYGFAQVPLALKLKWQQALGEYLLKRDCLSGVVVLMDIRHPLKDLDMQMIEWAVESHIPVLALLTKADKLGQSDRMKMVNEVRKKLSNFDDAVKVEPFSSLKGIGKSKVLSILDGWCKPEWLMQQIEADAIAAAQAEAGKE
>NC_010334.1|WP_012279266.1|5128615_5129236_+|cytochrome-c4
MKKLALALSVLATISSPAMAEGNAEAGKTKAIVCSACHGIDGNSMIDMYPKLAGQHSTYLEKQLHDFRSAAQTGGKEGRMDPIMGGMSIALSDQDIADISAFYASQAKNDIDVKDIPELGAQLYKNGDATRGITACIACHGPKGDGMELAGFPAIDGQHANYIKIQLNKFHDTNRNNDLNGMMQDVAKKLDSYDIDALSKYISSLK
>NC_010334.1|WP_012279267.1|5130060_5130729_+|methyltransferase-domain-containing-protein
MRRCPLCHSGDTVRFYANKKRCLYHCHHCQLVFADASSHLPPSAELQKYRLANNKQKPLARFMLDLVSQCEDGTNPLLGLNFGRTLDSKTLQKINARGHQLYQYDPSQAPWSSQLKQEYDFICCYQVFEHFRFPYKEWELLSHLLKPGGWMAICTPLLSELNAFDKWHHKNNLTHVSFYQRATFEFLANRVGFKLLFAANDLILVQKPSGSDITRDQTSVVA
>NC_010334.1|WP_012279268.1|5130781_5131318_+|Der-GTPase-activating-protein-YihI
MSRSKKTRKSNENAPKLAPRTKKKDRVLAGKKQVAGNKAGSRHNASMIESQANGGKAKSADPRHGSKKPVQLHINTEVKVEKKPKGPKLTDEQKLLKLEEDPRLNSLLDMLEEGKNLSQDDQTWLNKQLNQIEALMDRLGINDEEDDEPKNKKAVSDDDLFDKFESGADLLKDYFDKD
>NC_010334.1|WP_012279269.1|5131407_5131875_+|DUF2489-domain-containing-protein
MTTAFIVLGVIIIAALSAYATYLLIQVRKQKLLKLKHKQEQADAAKAKANELLDNIRYIANAMVEERCELSEGVMRIVKLSQLVGISELVANHYPATFEHFEVIKEHPIKDQRKALEKQERMKLDFARMRSESELEAKILEEAKRLSELKLGPLH
>NC_010334.1|WP_083758350.1|5132128_5133505_+|oxygen-independent-coproporphyrinogen-III-oxidase
MKQPTPISWDQSMIEKYNYSGPRYTSYPTALEFDDSFTEEKLLTSIKNSKSDKLSLYIHIPFCAKLCYYCGCNKVITRHHHKADQYIEYLAAEIVKRAPLFKDYLVTQIHWGGGTPTFLTPEQILTLSALVKANFNVAEVGEYSIEVDPREIELSMLDTLKEAGFNRISIGVQDFNKKVQVAVNREQDEQFIFDLMARAKELGFVSTNIDLIYGLPHQTPETFAETMQRVLDLNPDRLSVFNYAHLPSRFAAQRKIKDEDLASPQQKLDMLHQTIETLTGAGYQYIGMDHFAKPDDELSILQNEGRLHRNFQGYTTQEECDLLGLGVSSISQIGDCYAQNQKDIRPYFESIDANGHALWKGCSLNRDDEIRRVVIKQLICHFDLDMAQIEEKLNINFEEYFAEDLKLLQTFIDDKLVDITDRKITISPTGRLLIRNICICFDVYYREKARQQQFSRVI
>NC_010334.1|WP_012279271.1|5133667_5135455_+|DUF885-domain-containing-protein
MYKYLLPSVLVLGLSACQTAPTTASQQNVITEQVAANAQLQSLIDAAWQVSLDASPSFAYSLGDKTAAGKLQDLSPAALEALNQRKQQLLKQLQQIDSNSLNKEDAINAQILRDQLQNDVDQYHYKDHYMPISAEGGFHAYIASIAKGRFAKVEDYQNYMKQLQALPEHFNQQTYWLKQGLAAGITPAKATLKGFETSITAFIVPVEESGYFKPFTQYPAHFSDAEKAQLTKQGRALVQDTVLPQYQAFFDFITTEYIPNTRISIATYDLPDGKAFYENRVRYYTTLDMTSDEVHQLGLQEVKRIRAEMQQIIEQVGFEGNFAEFLDFLRTDPQFYPKTAEELLKEAAFIAKKADAMLPKYFGKLPRQPYGIEPVPAEIAPKYTTGRYSGSSRDDEPGYYWVNTYALDKRPLYEMEALTLHEAVPGHHLQISLNQELTDLPNFRRYSYISAFGEGWGLYSEYLGLEAGFYQDPYSNFGRLTYEMWRAARLVVDTGMHAKGWTRQQAIDFMASNTALSMHNVNTEIDRYINWPGQALSYKIGELTIKRLRAQTEAELGGDFDIRAFHDAVLANGSVPMSILEQLINDFIAQQKATI
>NC_010334.1|WP_012279272.1|5135599_5136574_+|alpha/beta-fold-hydrolase
MSIASEAYMPNQTTTRFSSEHHLNSPEQKVFWQQVTQSSFKTHDDITLAYARITHPDSIGTIVISSGRVESYLKYKELMFDLYQRGYSLFALDHRGQGLSARTTANPHQGYIDKFQRYVDDFAEFVTKIVKPHSMENYYLVGHSMGGAIGTLYLSQYPATFKAAVFSAPMYGIKLPLPRGFIRALASLLDNHKQPNYILGGKDYHAEPFDKNDLTHSKLRYDDYRELYRQQPQLQLGSPTNHWLVESIDAAEQAIDAARNSKIPLLILQAEEDSIVDNRAQKRAINGLCKLTKIPYARHEIFMERDTPRNLAINALCDFLKQVR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010334_2	2.1\|393207\|25\|NC_010334\|CRISPRCasFinder	393207-393231	25	NC_010334.1	341880-341904	1	0.96
NC_010334_2	2.1\|393207\|25\|NC_010334\|CRISPRCasFinder	393207-393231	25	NC_010334.1	998608-998632	1	0.96
NC_010334_2	2.1\|393207\|25\|NC_010334\|CRISPRCasFinder	393207-393231	25	NC_010334.1	694373-694397	2	0.92

1. spacer 2.1|393207|25|NC_010334|CRISPRCasFinder matches to position: 341880-341904, mismatch: 1, identity: 0.96

tcctcgcagcgcagcgtcctaggat	CRISPR spacer
tcctcgcagcgaagcgtcctaggat	Protospacer
*********** *************

2. spacer 2.1|393207|25|NC_010334|CRISPRCasFinder matches to position: 998608-998632, mismatch: 1, identity: 0.96

tcctcgcagcgcagcgtcctaggat	CRISPR spacer
tcctcgcagcgaagcgtcctaggat	Protospacer
*********** *************

3. spacer 2.1|393207|25|NC_010334|CRISPRCasFinder matches to position: 694373-694397, mismatch: 2, identity: 0.92

tcctcgcagcgcagcgtcctaggat	CRISPR spacer
tcctcgcagcgaagcgccctaggat	Protospacer
*********** ****.********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010334_5	5.1\|4228194\|27\|NC_010334\|CRISPRCasFinder	4228194-4228220	27	NZ_CP017942	Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence	513011-513037	6	0.778

1. spacer 5.1|4228194|27|NC_010334|CRISPRCasFinder matches to NZ_CP017942 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.778

gtaaagggtcagcccagaacgggagga	CRISPR spacer
ggctagggtcagcccagtacgggagat	Protospacer
*   ************* *******.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1461213 : 1468763

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012276313.1\|1461213_1462881_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	1.7e-39	27.8
WP_012276314.1\|1463159_1464416_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	1.9e-94	52.2
WP_012276315.1\|1464569_1465019_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_012276316.1\|1465087_1466209_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	7.1e-53	37.2
WP_012276317.1\|1466212_1466878_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-25	30.6
WP_012276318.1\|1467037_1468141_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	7.1e-66	39.2
WP_012276319.1\|1468286_1468763_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.5e-28	45.0

DBSCAN-SWA_2

1491194 : 1501925

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012276338.1\|1491194_1491947_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.3e-71	53.5
WP_012276339.1\|1492048_1492684_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	9.9e-36	49.4
WP_012276340.1\|1492748_1493642_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_012276341.1\|1493718_1494684_+	RNA polymerase sigma factor RpoS	M4SMP8	Cyanophage	1.1e-33	32.4
WP_012276342.1\|1494803_1497383_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.5e-34	23.4
WP_012276343.1\|1497703_1498771_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.4e-111	61.9
WP_012276344.1\|1499300_1501925_+\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	4.1e-67	38.5

DBSCAN-SWA_3

1583978 : 1659242

Pseudoalteromonas_phage(42.11%)

integrase,capsid,terminase,plate,head,tRNA,portal,tail

attL 1583315:1583362|attR 1619850:1619897

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1583315:1583362	attL	NA	NA	NA	NA
WP_150102135.1\|1583978_1584137_-\|integrase	integrase	F1BUN9	Cronobacter_phage	3.0e-10	73.3
WP_012276409.1\|1584531_1585779_+	AAA family ATPase	C7BGE8	Burkholderia_phage	2.5e-06	23.2
WP_012276410.1\|1585771_1586353_+	HNH endonuclease	NA	NA	NA	NA
WP_012276411.1\|1586451_1586625_-\|integrase	integrase	F1BUN9	Cronobacter_phage	2.3e-11	71.4
WP_041415883.1\|1587215_1587773_-	hypothetical protein	NA	NA	NA	NA
WP_012276413.1\|1587769_1588795_-\|integrase	tyrosine-type recombinase/integrase	A0A1S6L016	Salmonella_phage	9.5e-105	54.8
WP_012276414.1\|1588795_1589986_-	hypothetical protein	U3PB51	Vibrio_phage	1.1e-51	40.0
WP_012276415.1\|1590005_1590695_-	helix-turn-helix domain containing protein	R9TR74	Vibrio_phage	3.0e-14	24.5
WP_012276416.1\|1590779_1590986_+	hypothetical protein	Q1I116	Pasteurella_virus	5.9e-06	37.3
WP_012276417.1\|1591054_1591597_+	phage regulatory CII family protein	A5X9F7	Aeromonas_virus	1.1e-19	39.3
WP_012276418.1\|1591609_1592056_+	hypothetical protein	NA	NA	NA	NA
WP_012276419.1\|1592135_1592375_+	hypothetical protein	NA	NA	NA	NA
WP_012276420.1\|1592376_1592682_+	hypothetical protein	NA	NA	NA	NA
WP_041415884.1\|1592678_1592879_+	hypothetical protein	NA	NA	NA	NA
WP_012276421.1\|1592875_1593112_+	hypothetical protein	NA	NA	NA	NA
WP_012276422.1\|1593108_1593363_+	hypothetical protein	NA	NA	NA	NA
WP_012276423.1\|1593362_1595663_+	replication endonuclease	A0A2P1CKY6	Pseudoalteromonas_phage	3.9e-82	38.1
WP_150102069.1\|1595963_1596284_+	hypothetical protein	NA	NA	NA	NA
WP_190273656.1\|1596411_1596624_+	hypothetical protein	NA	NA	NA	NA
WP_012276425.1\|1596547_1596799_-	ogr/Delta-like zinc finger family protein	R9TNQ2	Vibrio_phage	3.5e-21	60.2
WP_041416290.1\|1597011_1597353_+	hypothetical protein	NA	NA	NA	NA
WP_150102070.1\|1597509_1598016_+	hypothetical protein	NA	NA	NA	NA
WP_012276428.1\|1598151_1599168_-\|portal	phage portal protein	A0A1L5C2C1	Pseudoalteromonas_phage	9.9e-155	78.7
WP_041415888.1\|1599149_1600940_-\|terminase	terminase	A0A1L5C295	Pseudoalteromonas_phage	1.4e-284	79.2
WP_012276430.1\|1601162_1602059_+\|capsid	GPO family capsid scaffolding protein	A0A2I7RNH1	Vibrio_phage	7.7e-34	44.3
WP_012276431.1\|1602108_1603149_+\|capsid	phage major capsid protein, P2 family	A0A1L5C2B0	Pseudoalteromonas_phage	1.2e-136	71.1
WP_012276432.1\|1603229_1603790_+	hypothetical protein	NA	NA	NA	NA
WP_083758337.1\|1603837_1604503_+	hypothetical protein	A0A1L5C2B7	Pseudoalteromonas_phage	5.6e-66	65.1
WP_012276434.1\|1604624_1605074_+\|head	head completion/stabilization protein	A0A1L5C2A5	Pseudoalteromonas_phage	6.9e-52	73.2
WP_012276435.1\|1605070_1605571_+\|tail	phage tail protein	A0A1L5C2C9	Pseudoalteromonas_phage	5.3e-61	72.4
WP_012276436.1\|1605567_1606221_+	hypothetical protein	A0A1L5C2C4	Pseudoalteromonas_phage	9.4e-66	61.8
WP_012276437.1\|1606234_1607353_+	DUF2586 family protein	A0A1L5C2B3	Pseudoalteromonas_phage	2.3e-152	73.6
WP_012276438.1\|1607377_1607827_+	DUF2597 family protein	A0A1L5C2D0	Pseudoalteromonas_phage	9.6e-70	90.6
WP_012276439.1\|1607840_1608047_+	TraR/DksA C4-type zinc finger protein	C4MZI8	Enterobacteria_phage	6.5e-05	38.1
WP_012276440.1\|1608043_1608592_+	N-acetylmuramidase	A2I317	Vibrio_virus	6.7e-49	51.1
WP_012276441.1\|1608601_1608991_+	hypothetical protein	A0A1B1ITB4	uncultured_Mediterranean_phage	1.4e-19	45.5
WP_012276442.1\|1608987_1609254_+	hypothetical protein	A0A1L5C2D5	Pseudoalteromonas_phage	1.9e-12	46.2
WP_012276443.1\|1609250_1609514_+\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	1.4e-15	47.7
WP_190273657.1\|1609564_1609702_+	hypothetical protein	NA	NA	NA	NA
WP_012276444.1\|1609746_1611501_+\|tail	phage tail tape measure protein	A0A1L5C2B2	Pseudoalteromonas_phage	4.3e-206	66.9
WP_012276445.1\|1611497_1611851_+	DUF2590 family protein	A0A1L5C2D6	Pseudoalteromonas_phage	1.6e-35	69.5
WP_012276446.1\|1611843_1613040_+\|plate	baseplate J/gp47 family protein	A0A1L5C2D1	Pseudoalteromonas_phage	6.4e-169	73.0
WP_041416292.1\|1613043_1613703_+	hypothetical protein	A0A1L5C2C5	Pseudoalteromonas_phage	2.3e-59	67.1
WP_012276448.1\|1616518_1617016_+	hypothetical protein	A0A1L5C2B6	Pseudoalteromonas_phage	6.7e-40	70.2
WP_012276449.1\|1617015_1617705_+	hypothetical protein	A0A2I7RNK1	Vibrio_phage	4.0e-67	48.0
WP_012276450.1\|1617717_1618392_+	hypothetical protein	A0A2I7RNK2	Vibrio_phage	5.3e-72	63.8
WP_012276451.1\|1618415_1618613_+	hypothetical protein	A0A2I7RNJ8	Vibrio_phage	3.6e-13	67.7
WP_012276452.1\|1618760_1619126_+	hypothetical protein	NA	NA	NA	NA
WP_012154535.1\|1620315_1620810_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.7e-23	42.1
1619850:1619897	attR	NA	NA	NA	NA
WP_012276453.1\|1621002_1621434_+	ubiquinone-binding protein	NA	NA	NA	NA
WP_012276454.1\|1621430_1621763_+	RnfH family protein	NA	NA	NA	NA
WP_012276455.1\|1621861_1622356_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_012276456.1\|1622861_1623668_+	hypothetical protein	NA	NA	NA	NA
WP_012276457.1\|1623745_1623958_+	hypothetical protein	NA	NA	NA	NA
WP_041415891.1\|1623965_1625750_+	diguanylate cyclase	NA	NA	NA	NA
WP_012276459.1\|1626594_1628232_+	malate synthase A	NA	NA	NA	NA
WP_012276460.1\|1628610_1630089_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_012276461.1\|1630263_1630755_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012276462.1\|1630814_1631639_-	zinc-dependent peptidase	NA	NA	NA	NA
WP_012276463.1\|1631903_1632350_-	hypothetical protein	NA	NA	NA	NA
WP_012276464.1\|1632309_1633053_-	AAA family ATPase	J9Q7R7	Salmonella_phage	3.2e-38	43.8
WP_012276465.1\|1633660_1633894_+	DUF3820 family protein	NA	NA	NA	NA
WP_012276466.1\|1634072_1634375_+	hypothetical protein	NA	NA	NA	NA
WP_012276467.1\|1634542_1635052_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012276468.1\|1635143_1635683_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012276469.1\|1635785_1637552_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_012276470.1\|1637762_1638833_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_012276471.1\|1638992_1640114_+\|tRNA	bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN	NA	NA	NA	NA
WP_012276472.1\|1640134_1640935_+	type IV pilus biogenesis/stability protein PilW	NA	NA	NA	NA
WP_012276473.1\|1640934_1641918_+	DUF4115 domain-containing protein	NA	NA	NA	NA
WP_012276474.1\|1641940_1643056_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_012276475.1\|1643193_1644468_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_012276476.1\|1644482_1645103_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012276477.1\|1645114_1646302_+	outer membrane protein assembly factor BamB	NA	NA	NA	NA
WP_012276478.1\|1646387_1647860_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
WP_012276479.1\|1648362_1648944_+	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_012276480.1\|1649626_1651075_+	purine permease	H9YQ34	environmental_Halophage	3.9e-19	43.7
WP_190273626.1\|1651425_1653015_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_012276482.1\|1653550_1654888_-	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	3.4e-38	33.0
WP_012276483.1\|1655007_1656480_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	3.8e-91	38.3
WP_012276484.1\|1656604_1658182_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_150102071.1\|1658318_1658513_-	hypothetical protein	NA	NA	NA	NA
WP_083758310.1\|1658720_1659242_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010334

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection