CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_012040	Campylobacter lari RM2100 plasmid pCL2100, complete sequence	0 crisprs	NA	0	0	0	0
NC_012039	Campylobacter lari RM2100, complete sequence	0 crisprs	csa3,DEDDh,WYL	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

273452 : 279473

Synechococcus_phage(57.14%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039662809.1\|273452_273848_+	HAD hydrolase family protein	M4QRS4	Synechococcus_phage	2.1e-12	45.0
WP_012661046.1\|273844_275383_+	capsular polysaccharide biosynthesis protein	B2ZYD9	Ralstonia_phage	8.0e-39	27.0
WP_012661047.1\|275379_276111_+	glycosyltransferase family 2 protein	A0A222YY90	Synechococcus_phage	1.8e-17	28.1
WP_012661048.1\|276091_276727_+	hypothetical protein	A0A2H4UUJ1	Bodo_saltans_virus	1.9e-15	33.1
WP_012661049.1\|276719_277355_+	HAD family phosphatase	M1I080	Acanthocystis_turfacea_Chlorella_virus	1.2e-36	42.6
WP_012661050.1\|277351_278092_+	NTP transferase domain-containing protein	A0A1D8KNV9	Synechococcus_phage	2.7e-29	31.6
WP_012661051.1\|278072_278408_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012661052.1\|278410_278743_+	hypothetical protein	NA	NA	NA	NA
WP_041570326.1\|278738_279473_+	glycosyltransferase family 2 protein	A0A1D8KNV9	Synechococcus_phage	8.7e-52	48.1

DBSCAN-SWA_2

512794 : 523066

environmental_Halophage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012661255.1\|512794_514156_+	uracil-xanthine permease	H9YQ34	environmental_Halophage	3.2e-39	66.7
WP_041570271.1\|514176_514980_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.3e-45	41.4
WP_012661257.1\|514992_515463_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.2e-31	45.4
WP_012661258.1\|515464_515863_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_012661259.1\|515859_516543_+	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_012661260.1\|516553_516967_-	META domain-containing protein	NA	NA	NA	NA
WP_012661261.1\|516978_518571_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.5e-05	50.9
WP_012661262.1\|518586_520119_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	1.4e-40	47.1
WP_012661263.1\|520115_520886_-	TerB family tellurite resistance protein	NA	NA	NA	NA
WP_012661264.1\|520888_523066_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.7e-140	38.8

DBSCAN-SWA_3

789966 : 829066

Campylobacter_phage(92.5%)

integrase,tail,head,terminase,capsid,protease,portal

attL 782935:782952|attR 804816:804833

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
782935:782952	attL	NA	NA	NA	NA
WP_012661533.1\|789966_791145_+\|integrase	site-specific integrase	X2KXI6	Campylobacter_phage	5.1e-171	76.6
WP_012661534.1\|791137_791323_-	helix-turn-helix domain-containing protein	X2KXB9	Campylobacter_phage	6.2e-15	64.4
WP_012661535.1\|791324_791681_-	hypothetical protein	X2KR94	Campylobacter_phage	4.7e-11	35.7
WP_012661536.1\|791696_791903_-	hypothetical protein	NA	NA	NA	NA
WP_012661537.1\|791886_792261_-	hypothetical protein	X2KQ09	Campylobacter_phage	2.0e-28	54.6
WP_049752007.1\|792257_792974_-	hypothetical protein	X2KQ81	Campylobacter_phage	6.3e-63	57.6
WP_012661539.1\|793144_793303_-	hypothetical protein	X2KR17	Campylobacter_phage	1.7e-05	53.1
WP_012661540.1\|793305_793485_-	hypothetical protein	NA	NA	NA	NA
WP_012661541.1\|793833_794133_-	hypothetical protein	X2KRM3	Campylobacter_phage	4.1e-08	45.7
WP_041570280.1\|794133_794340_-	hypothetical protein	NA	NA	NA	NA
WP_012661543.1\|794601_794985_+	helix-turn-helix domain-containing protein	X2KPM6	Campylobacter_phage	1.2e-33	62.2
WP_012661544.1\|794987_795293_+	hypothetical protein	X2KX12	Campylobacter_phage	9.2e-24	57.1
WP_012661545.1\|795293_796673_+	3'-5' exonuclease	A0A1D9C9N8	Salinivibrio_phage	4.2e-07	38.1
WP_012661546.1\|796827_797871_+	type I restriction enzyme HsdR N-terminal domain-containing protein	A0A1S5SAB0	Streptococcus_phage	2.9e-48	34.2
WP_153801295.1\|797961_799719_+	NTPase KAP	X2KLG0	Campylobacter_phage	4.7e-104	40.6
WP_041570281.1\|799699_799915_-	hypothetical protein	X2KQ22	Campylobacter_phage	2.1e-14	70.0
WP_012661549.1\|799835_800225_-	hypothetical protein	X2KX19	Campylobacter_phage	2.7e-12	42.5
WP_012661550.1\|800454_800922_-	hypothetical protein	X2KRD2	Campylobacter_phage	8.8e-50	62.2
WP_012661551.1\|800922_802221_-	hypothetical protein	X2KRN1	Campylobacter_phage	2.6e-67	38.8
WP_012661552.1\|802221_802593_-	DUF1353 domain-containing protein	A7YGF6	Campylobacter_phage	1.0e-40	59.0
WP_012661553.1\|802573_803071_-	hypothetical protein	X2KM25	Campylobacter_phage	1.2e-31	49.3
WP_012661554.1\|803072_803708_-	DUF4376 domain-containing protein	A0A1D8EXA4	Campylobacter_phage	4.6e-41	63.7
WP_012661555.1\|803717_804167_-	hypothetical protein	X2KQT3	Campylobacter_phage	4.8e-37	54.0
WP_012661557.1\|805760_806372_-	hypothetical protein	X2KQ29	Campylobacter_phage	2.5e-20	34.7
804816:804833	attR	NA	NA	NA	NA
WP_012661558.1\|806358_806685_-	hypothetical protein	X2KXD7	Campylobacter_phage	1.1e-22	54.4
WP_012661559.1\|806694_807132_-\|head,tail	phage gp6-like head-tail connector protein	X2KR38	Campylobacter_phage	3.1e-49	66.9
WP_012661560.1\|807128_807371_-	hypothetical protein	X2KLU2	Campylobacter_phage	8.1e-07	58.7
WP_012661561.1\|807381_808542_-\|capsid	phage major capsid protein	X2KQ31	Campylobacter_phage	3.5e-148	68.3
WP_012661562.1\|808553_809105_-\|head,protease	HK97 family phage prohead protease	X2KXE1	Campylobacter_phage	5.3e-70	71.6
WP_012661563.1\|809174_810044_-	hypothetical protein	X2KRE5	Campylobacter_phage	3.4e-111	67.1
WP_012661564.1\|810040_815530_-	hypothetical protein	X2KR41	Campylobacter_phage	0.0e+00	56.2
WP_041570282.1\|815586_815910_+	hypothetical protein	X2KLU6	Campylobacter_phage	1.6e-13	41.8
WP_012661566.1\|815901_816120_-	hypothetical protein	X2KXE3	Campylobacter_phage	1.3e-16	66.7
WP_012661567.1\|816200_816563_-	hypothetical protein	X2KRE9	Campylobacter_phage	4.8e-27	55.0
WP_012661568.1\|816559_817534_-	hypothetical protein	X2KRA7	Campylobacter_phage	3.0e-132	74.9
WP_012661569.1\|817597_817948_-	hypothetical protein	NA	NA	NA	NA
WP_041570369.1\|817948_818437_-	hypothetical protein	X2KRF4	Campylobacter_phage	5.4e-42	57.6
WP_012661571.1\|818460_819630_-\|portal	phage portal protein	X2KR48	Campylobacter_phage	2.1e-169	78.0
WP_012661573.1\|820830_821631_+	hypothetical protein	NA	NA	NA	NA
WP_012661574.1\|821816_821993_+	hypothetical protein	NA	NA	NA	NA
WP_041570283.1\|821961_822408_+	hypothetical protein	NA	NA	NA	NA
WP_012661576.1\|822479_824111_-\|terminase	terminase large subunit	X2KXM1	Campylobacter_phage	2.1e-271	84.8
WP_012661577.1\|824103_824739_-\|terminase	P27 family phage terminase small subunit	X2KXE9	Campylobacter_phage	2.7e-73	70.1
WP_012661578.1\|824982_825333_-	HNH endonuclease	X2KQ74	Campylobacter_phage	7.3e-41	64.3
WP_012661579.1\|825329_825608_-	hypothetical protein	X2KM44	Campylobacter_phage	2.2e-08	74.3
WP_012661580.1\|827359_827611_-	hypothetical protein	X2KX19	Campylobacter_phage	3.5e-05	41.5
WP_012661581.1\|828145_829066_+	transcriptional regulator	A0A0R6PH67	Moraxella_phage	1.3e-09	24.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage