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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_010995 Cellvibrio japonicus Ueda107, complete sequence 4 crisprs cas3,csa3,DEDDh,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,WYL,RT,TnsE_C 2 16 6 0

Results visualization

1. NC_010995
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010995_1 591991-592088 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010995_2 1163267-1163367 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010995_3 1933060-1933146 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010995_4 2797480-2802278 TypeI I-C
72 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_010995_3 3.1|1933087|33|NC_010995|CRISPRCasFinder 1933087-1933119 33 NC_010995.1 2704353-2704385 0 1.0
NC_010995_1 1.1|592014|52|NC_010995|CRISPRCasFinder 592014-592065 52 NC_010995.1 3958609-3958660 2 0.962

1. spacer 3.1|1933087|33|NC_010995|CRISPRCasFinder matches to position: 2704353-2704385, mismatch: 0, identity: 1.0

tcttctttgccgattcaaaagtgacccgtgtca	CRISPR spacer
tcttctttgccgattcaaaagtgacccgtgtca	Protospacer
*********************************

2. spacer 1.1|592014|52|NC_010995|CRISPRCasFinder matches to position: 3958609-3958660, mismatch: 2, identity: 0.962

gtggctgccatccatggcagccacccctgcggggccgccgcttccggcgtca	CRISPR spacer
gtggccgccatccatggcagccacccctgcggggccgccgtttccggcgtca	Protospacer
*****.**********************************.***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_010995_4 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801153-2801186 34 KR537871 Stenotrophomonas phage vB_SmaS-DLP_2, complete genome 30158-30191 0 1.0
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 NC_028879 Pseudomonas phage PaMx42, complete genome 33034-33068 1 0.971
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 NC_017864 Pseudomonas phage vB_Pae-Kakheti25, complete genome 32693-32727 1 0.971
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 DQ163913 Bacteriophage PA73, complete genome 32771-32805 1 0.971
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 NC_007806 Pseudomonas phage 73, complete genome 32771-32805 1 0.971
NC_010995_4 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801153-2801186 34 MG897800 Pseudomonas phage vB_PaeS_C1, complete genome 9302-9335 1 0.971
NC_010995_4 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801153-2801186 34 KM434185 Pseudomonas phage vB_Pae_PS9N, complete genome 35914-35947 1 0.971
NC_010995_4 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801153-2801186 34 NC_017864 Pseudomonas phage vB_Pae-Kakheti25, complete genome 30210-30243 1 0.971
NC_010995_4 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801153-2801186 34 DQ163913 Bacteriophage PA73, complete genome 30288-30321 1 0.971
NC_010995_4 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801153-2801186 34 KR537872 Stenotrophomonas phage vB_SmaS-DLP_1, complete genome 30279-30312 1 0.971
NC_010995_4 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801153-2801186 34 NC_007806 Pseudomonas phage 73, complete genome 30288-30321 1 0.971
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 LC581504 Staphylococcus phage vB_PaeS-Yazdi-M DNA, complete genome 22195-22229 2 0.943
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 LC552830 Pseudomonas phage vB_PaeS-Yazdi-M DNA, complete genome 22195-22229 2 0.943
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 MN062187 Xanthomonas phage Samson, complete genome 33110-33144 2 0.943
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 LZ998060 JP 2017534684-A/7: Phage Therapy 36913-36947 2 0.943
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 JQ067086 UNVERIFIED: Pseudomonas phage PaMx10, partial genome 2050-2084 2 0.943
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 MK165657 Pseudomonas phage vB_PaeS_SCUT-S3, complete genome 31928-31962 2 0.943
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 MK165658 Pseudomonas phage vB_PaeS_SCUT-S4, complete genome 32682-32716 2 0.943
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 KM434185 Pseudomonas phage vB_Pae_PS9N, complete genome 38424-38458 2 0.943
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 LQ277712 Sequence 7 from Patent WO2016071503 36913-36947 2 0.943
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 KR537872 Stenotrophomonas phage vB_SmaS-DLP_1, complete genome 32762-32796 2 0.943
NC_010995_4 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800622-2800656 35 NC_018278 Burkholderia phage KL1, complete genome 33308-33342 5 0.857
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 MK820641 Gordonia phage EnalisNailo, complete genome 45221-45254 6 0.824
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 MK284520 Gordonia phage Lilas, complete genome 46759-46792 6 0.824
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 MT771342 Gordonia phage Matteo, complete genome 38397-38430 6 0.824
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 MK016492 Gordonia phage Bialota, complete genome 45335-45368 6 0.824
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 MK433274 Gordonia phage Bradissa, complete genome 45687-45720 6 0.824
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 NC_031097 Gordonia phage Zirinka, complete genome 45323-45356 6 0.824
NC_010995_4 4.11|2798175|36|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2798175-2798210 36 MK416015 Klebsiella phage ST16-OXA48phi5.4, complete genome 35759-35794 7 0.806
NC_010995_4 4.28|2799303|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2799303-2799336 34 MN617835 Enterobacter phage prasa_myo, complete genome 20596-20629 7 0.794
NC_010995_4 4.28|2799303|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2799303-2799336 34 MG999954 Enterobacter phage myPSH1140, complete genome 20596-20629 7 0.794
NC_010995_4 4.65|2801751|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801751-2801784 34 NZ_CP017294 Pseudomonas aeruginosa strain PA83 plasmid unnamed1, complete sequence 58602-58635 7 0.794
NC_010995_4 4.13|2798309|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2798309-2798342 34 NZ_CP017941 Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence 234622-234655 8 0.765
NC_010995_4 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800163-2800196 34 NZ_CP035025 Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pE 3489-3522 8 0.765
NC_010995_4 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800163-2800196 34 NZ_CP035025 Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pE 19602-19635 8 0.765
NC_010995_4 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800163-2800196 34 NZ_CP012660 Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK06, complete sequence 15725-15758 8 0.765
NC_010995_4 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800163-2800196 34 NC_021520 Lactobacillus plantarum 16 plasmid Lp16L, complete sequence 4651-4684 8 0.765
NC_010995_4 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800163-2800196 34 NZ_CP046667 Lactobacillus plantarum strain 83-18 plasmid p83-18.7, complete sequence 2908-2941 8 0.765
NC_010995_4 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800163-2800196 34 NZ_KT149389 Lactobacillus plantarum strain BM4 plasmid pBM3, complete sequence 3666-3699 8 0.765
NC_010995_4 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800163-2800196 34 NC_021227 Lactobacillus plantarum subsp. plantarum P-8 plasmid LBPp5, complete sequence 1148-1181 8 0.765
NC_010995_4 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800163-2800196 34 NZ_CP028981 Lactobacillus plantarum strain LQ80 plasmid pLQ804, complete sequence 13348-13381 8 0.765
NC_010995_4 4.57|2801219|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801219-2801253 35 MN694020 Marine virus AFVG_250M542, complete genome 803-837 8 0.771
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 NZ_CP010312 Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence 132460-132493 8 0.765
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 MT952844 Gordonia phage Bosnia, complete genome 47627-47660 8 0.765
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 MT723938 Gordonia phage Bunnybear, complete genome 44050-44083 8 0.765
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 MG872834 Gordonia phage Confidence, complete genome 43235-43268 8 0.765
NC_010995_4 4.69|2802015|33|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2802015-2802047 33 KT716399 Pseudomonas phage POR1, complete genome 27820-27852 8 0.758
NC_010995_4 4.21|2798839|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2798839-2798873 35 NZ_CP032678 Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence 304739-304773 9 0.743
NC_010995_4 4.32|2799568|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2799568-2799601 34 NZ_CP023451 Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p2, complete sequence 197783-197816 9 0.735
NC_010995_4 4.32|2799568|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2799568-2799601 34 CP021185 Sphingomonas wittichii DC-6 plasmid pDC04, complete sequence 35504-35537 9 0.735
NC_010995_4 4.32|2799568|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2799568-2799601 34 NZ_AP018666 Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete sequence 57364-57397 9 0.735
NC_010995_4 4.51|2800823|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800823-2800856 34 NZ_CP043059 Dolichospermum sp. UHCC 0315A plasmid pUHCC0315c, complete sequence 69830-69863 9 0.735
NC_010995_4 4.51|2800823|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800823-2800856 34 NC_007410 Trichormus variabilis ATCC 29413 plasmid A, complete sequence 341151-341184 9 0.735
NC_010995_4 4.51|2800823|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800823-2800856 34 NZ_CP047243 Trichormus variabilis 0441 plasmid unnamed1, complete sequence 346876-346909 9 0.735
NC_010995_4 4.55|2801087|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801087-2801120 34 MN657118 Psychrobacter sp. strain ANT_P53 plasmid pA53P4, complete sequence 33378-33411 9 0.735
NC_010995_3 3.1|1933087|33|NC_010995|CRISPRCasFinder 1933087-1933119 33 MK798157 Enterococcus hirae strain fas4 plasmid pfas4-1, complete sequence 11606-11638 10 0.697
NC_010995_3 3.1|1933087|33|NC_010995|CRISPRCasFinder 1933087-1933119 33 NZ_MF807214 Streptococcus thermophilus strain CS17 plasmid CS17-C, complete sequence 2730-2762 10 0.697
NC_010995_4 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800163-2800196 34 KC699836 Bacillus phage SIOphi, partial genome 92560-92593 10 0.706
NC_010995_4 4.53|2800955|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2800955-2800988 34 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 1193765-1193798 10 0.706
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 AP013564 Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C5-MedDCM-OCT-S33-C6, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces 12322-12355 10 0.706
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 AP013528 Uncultured Mediterranean phage uvMED DNA, complete genome, group G3, isolate: uvMED-CGR-C7A-MedDCM-OCT-S41-C23 20684-20717 10 0.706
NC_010995_4 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2801817-2801850 34 AP013982 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S44-C91, *** SEQUENCING IN PROGRESS *** 11170-11203 10 0.706
NC_010995_4 4.32|2799568|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR 2799568-2799601 34 NZ_CP048424 Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence 22593-22626 11 0.676

1. spacer 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to KR537871 (Stenotrophomonas phage vB_SmaS-DLP_2, complete genome) position: , mismatch: 0, identity: 1.0

cgaacaatgcgatacttgttgttctgttaacatt	CRISPR spacer
cgaacaatgcgatacttgttgttctgttaacatt	Protospacer
**********************************

2. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NC_028879 (Pseudomonas phage PaMx42, complete genome) position: , mismatch: 1, identity: 0.971

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgctttgccgatgatcgcat	Protospacer
***************************.*******

3. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NC_017864 (Pseudomonas phage vB_Pae-Kakheti25, complete genome) position: , mismatch: 1, identity: 0.971

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgctttgccgataattgcat	Protospacer
******************************.****

4. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to DQ163913 (Bacteriophage PA73, complete genome) position: , mismatch: 1, identity: 0.971

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgctttgccgataattgcat	Protospacer
******************************.****

5. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NC_007806 (Pseudomonas phage 73, complete genome) position: , mismatch: 1, identity: 0.971

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgctttgccgataattgcat	Protospacer
******************************.****

6. spacer 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MG897800 (Pseudomonas phage vB_PaeS_C1, complete genome) position: , mismatch: 1, identity: 0.971

cgaacaatgcgatacttgttgttctgttaacatt	CRISPR spacer
cgaacaatgcgatacttgttgttctgtcaacatt	Protospacer
***************************.******

7. spacer 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to KM434185 (Pseudomonas phage vB_Pae_PS9N, complete genome) position: , mismatch: 1, identity: 0.971

cgaacaatgcgatacttgttgttctgttaacatt	CRISPR spacer
cgaacaatgcgatacttgttgttccgttaacatt	Protospacer
************************.*********

8. spacer 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NC_017864 (Pseudomonas phage vB_Pae-Kakheti25, complete genome) position: , mismatch: 1, identity: 0.971

cgaacaatgcgatacttgttgttctgttaacatt	CRISPR spacer
cgaacaatgcgatacttgttgttccgttaacatt	Protospacer
************************.*********

9. spacer 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to DQ163913 (Bacteriophage PA73, complete genome) position: , mismatch: 1, identity: 0.971

cgaacaatgcgatacttgttgttctgttaacatt	CRISPR spacer
cgaacaatgcgatacttgttgttccgttaacatt	Protospacer
************************.*********

10. spacer 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to KR537872 (Stenotrophomonas phage vB_SmaS-DLP_1, complete genome) position: , mismatch: 1, identity: 0.971

cgaacaatgcgatacttgttgttctgttaacatt	CRISPR spacer
cgaacaatgcgatacttgttgttccgttaacatt	Protospacer
************************.*********

11. spacer 4.56|2801153|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NC_007806 (Pseudomonas phage 73, complete genome) position: , mismatch: 1, identity: 0.971

cgaacaatgcgatacttgttgttctgttaacatt	CRISPR spacer
cgaacaatgcgatacttgttgttccgttaacatt	Protospacer
************************.*********

12. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to LC581504 (Staphylococcus phage vB_PaeS-Yazdi-M DNA, complete genome) position: , mismatch: 2, identity: 0.943

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgctttgccgatgattgcat	Protospacer
***************************.**.****

13. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to LC552830 (Pseudomonas phage vB_PaeS-Yazdi-M DNA, complete genome) position: , mismatch: 2, identity: 0.943

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgctttgccgatgattgcat	Protospacer
***************************.**.****

14. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MN062187 (Xanthomonas phage Samson, complete genome) position: , mismatch: 2, identity: 0.943

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgctttgccgatgattgcat	Protospacer
***************************.**.****

15. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to LZ998060 (JP 2017534684-A/7: Phage Therapy) position: , mismatch: 2, identity: 0.943

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgctttaccgatgatcgcat	Protospacer
*********************.*****.*******

16. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to JQ067086 (UNVERIFIED: Pseudomonas phage PaMx10, partial genome) position: , mismatch: 2, identity: 0.943

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgccttgccgataattgcat	Protospacer
******************.***********.****

17. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MK165657 (Pseudomonas phage vB_PaeS_SCUT-S3, complete genome) position: , mismatch: 2, identity: 0.943

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgctttgccgatgattgcat	Protospacer
***************************.**.****

18. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MK165658 (Pseudomonas phage vB_PaeS_SCUT-S4, complete genome) position: , mismatch: 2, identity: 0.943

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgccttgccgataattgcat	Protospacer
******************.***********.****

19. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to KM434185 (Pseudomonas phage vB_Pae_PS9N, complete genome) position: , mismatch: 2, identity: 0.943

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgccttgccgataattgcat	Protospacer
******************.***********.****

20. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to LQ277712 (Sequence 7 from Patent WO2016071503) position: , mismatch: 2, identity: 0.943

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgctttaccgatgatcgcat	Protospacer
*********************.*****.*******

21. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to KR537872 (Stenotrophomonas phage vB_SmaS-DLP_1, complete genome) position: , mismatch: 2, identity: 0.943

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggtcgccttgccgataattgcat	Protospacer
******************.***********.****

22. spacer 4.48|2800622|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NC_018278 (Burkholderia phage KL1, complete genome) position: , mismatch: 5, identity: 0.857

ttcgcccgcttcggtcgctttgccgataatcgcat	CRISPR spacer
ttcgcccgcttcggttgccttgccgataataccgt	Protospacer
***************.**.***********  *.*

23. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MK820641 (Gordonia phage EnalisNailo, complete genome) position: , mismatch: 6, identity: 0.824

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
gaacgtctcggcgtagcagtgatcgcatccgggg	Protospacer
 * .* *** ********************.***

24. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MK284520 (Gordonia phage Lilas, complete genome) position: , mismatch: 6, identity: 0.824

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
gaacgtctcggcgtagcagtgatcgcatccgggg	Protospacer
 * .* *** ********************.***

25. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MT771342 (Gordonia phage Matteo, complete genome) position: , mismatch: 6, identity: 0.824

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
gaacgtctcggcgtagcagtgatcgcatccgggg	Protospacer
 * .* *** ********************.***

26. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MK016492 (Gordonia phage Bialota, complete genome) position: , mismatch: 6, identity: 0.824

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
gaacgtctcggcgtagcagtgatcgcatccgggg	Protospacer
 * .* *** ********************.***

27. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MK433274 (Gordonia phage Bradissa, complete genome) position: , mismatch: 6, identity: 0.824

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
gaacgtctcggcgtagcagtgatcgcatccgggg	Protospacer
 * .* *** ********************.***

28. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NC_031097 (Gordonia phage Zirinka, complete genome) position: , mismatch: 6, identity: 0.824

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
gaacgtctcggcgtagcagtgatcgcatccgggg	Protospacer
 * .* *** ********************.***

29. spacer 4.11|2798175|36|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MK416015 (Klebsiella phage ST16-OXA48phi5.4, complete genome) position: , mismatch: 7, identity: 0.806

gtccgcgaggatctgcgctgtacgggtgtagttctc	CRISPR spacer
gtccgccaggatctgcgcggtacgggtaaacacctc	Protospacer
****** *********** ********. *  .***

30. spacer 4.28|2799303|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MN617835 (Enterobacter phage prasa_myo, complete genome) position: , mismatch: 7, identity: 0.794

actttagcgatggcaaccagaacatcaacaacaa	CRISPR spacer
agtctcgttatggcgacaagaacatcaacaacaa	Protospacer
* *.* *. *****.** ****************

31. spacer 4.28|2799303|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MG999954 (Enterobacter phage myPSH1140, complete genome) position: , mismatch: 7, identity: 0.794

actttagcgatggcaaccagaacatcaacaacaa	CRISPR spacer
agtctcgttatggcgacaagaacatcaacaacaa	Protospacer
* *.* *. *****.** ****************

32. spacer 4.65|2801751|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017294 (Pseudomonas aeruginosa strain PA83 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

ccgagattatcagcgcacatgctgaggccagtct	CRISPR spacer
ccgagattatcagcgcacatgcacagggagtcct	Protospacer
**********************  ***  . .**

33. spacer 4.13|2798309|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017941 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ccgccaagcaatccacgtttgtcaccgaatatct	CRISPR spacer
gctgcaagcaatccacgcttgtccccgaaattat	Protospacer
 *  *************.***** *****  * *

34. spacer 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035025 (Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pE) position: , mismatch: 8, identity: 0.765

tttcttatcc---cttggtgtcaatttcaatattaat	CRISPR spacer
---aatatgcaagcttagtgtcaatttcaacattaat	Protospacer
     *** *   ***.*************.******

35. spacer 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035025 (Lactobacillus plantarum strain 13_3 plasmid plsm_LP12_3_pE) position: , mismatch: 8, identity: 0.765

tttcttatcc---cttggtgtcaatttcaatattaat	CRISPR spacer
---aatatgcaagcttagtgtcaatttcaacattaat	Protospacer
     *** *   ***.*************.******

36. spacer 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012660 (Lactobacillus plantarum strain HFC8 isolate Lactobacillus plantarum plasmid pMK06, complete sequence) position: , mismatch: 8, identity: 0.765

tttcttatcc---cttggtgtcaatttcaatattaat	CRISPR spacer
---aatatgcaagcttagtgtcaatttcaacattaat	Protospacer
     *** *   ***.*************.******

37. spacer 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NC_021520 (Lactobacillus plantarum 16 plasmid Lp16L, complete sequence) position: , mismatch: 8, identity: 0.765

tttcttatcc---cttggtgtcaatttcaatattaat	CRISPR spacer
---aatatgcaagcttagtgtcaatttcaacattaat	Protospacer
     *** *   ***.*************.******

38. spacer 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046667 (Lactobacillus plantarum strain 83-18 plasmid p83-18.7, complete sequence) position: , mismatch: 8, identity: 0.765

tttcttatcc---cttggtgtcaatttcaatattaat	CRISPR spacer
---aatatgcaagcttagtgtcaatttcaacattaat	Protospacer
     *** *   ***.*************.******

39. spacer 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT149389 (Lactobacillus plantarum strain BM4 plasmid pBM3, complete sequence) position: , mismatch: 8, identity: 0.765

tttcttatcc---cttggtgtcaatttcaatattaat	CRISPR spacer
---aatatgcaagcttagtgtcaatttcaacattaat	Protospacer
     *** *   ***.*************.******

40. spacer 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NC_021227 (Lactobacillus plantarum subsp. plantarum P-8 plasmid LBPp5, complete sequence) position: , mismatch: 8, identity: 0.765

tttcttatcc---cttggtgtcaatttcaatattaat	CRISPR spacer
---aatatgcaagcttagtgtcaatttcaacattaat	Protospacer
     *** *   ***.*************.******

41. spacer 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028981 (Lactobacillus plantarum strain LQ80 plasmid pLQ804, complete sequence) position: , mismatch: 8, identity: 0.765

tttcttatcc---cttggtgtcaatttcaatattaat	CRISPR spacer
---aatatgcaagcttagtgtcaatttcaacattaat	Protospacer
     *** *   ***.*************.******

42. spacer 4.57|2801219|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MN694020 (Marine virus AFVG_250M542, complete genome) position: , mismatch: 8, identity: 0.771

-taaggcaaacagcagaaattgatggccatagtatt	CRISPR spacer
cttaaatgaa-aggagaaattgatggacatagtatt	Protospacer
 * *....** ** ************ *********

43. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010312 (Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence) position: , mismatch: 8, identity: 0.765

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
caggctctcggcgtagcagtgatcgcagccggcg	Protospacer
**    *** ***************** **.* *

44. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MT952844 (Gordonia phage Bosnia, complete genome) position: , mismatch: 8, identity: 0.765

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
gaacgtctccgcgtagcagtgatcgcacccggcg	Protospacer
 * .* ***.*****************.**.* *

45. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MT723938 (Gordonia phage Bunnybear, complete genome) position: , mismatch: 8, identity: 0.765

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
gaacgtctccgcgtagcagtgatcgcacccggcg	Protospacer
 * .* ***.*****************.**.* *

46. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MG872834 (Gordonia phage Confidence, complete genome) position: , mismatch: 8, identity: 0.765

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
gaacgtctccgcgtagcagtgatcgcacccggcg	Protospacer
 * .* ***.*****************.**.* *

47. spacer 4.69|2802015|33|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to KT716399 (Pseudomonas phage POR1, complete genome) position: , mismatch: 8, identity: 0.758

ttgtagggccatcggctgttggcccggctggca	CRISPR spacer
cggctgcgccatcggcggttgtcccggctggcc	Protospacer
. *. * ********* **** ********** 

48. spacer 4.21|2798839|35|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 9, identity: 0.743

caatcatggcggctgccaataatcaattaacgcct-----	CRISPR spacer
ccttcatggcgcctgccaatactcaatt-----ctatata	Protospacer
*  ******** ********* ******     **     

49. spacer 4.32|2799568|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023451 (Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.735

atctgttcgcggctatcgatctggccaatccctg	CRISPR spacer
atctgtgcgcggctctcgatctggaagacaccca	Protospacer
****** ******* *********  .*. **..

50. spacer 4.32|2799568|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to CP021185 (Sphingomonas wittichii DC-6 plasmid pDC04, complete sequence) position: , mismatch: 9, identity: 0.735

atctgttcgcggctatcgatctggccaatccctg	CRISPR spacer
atctgtgcgcggctctcgatctggaagacaccca	Protospacer
****** ******* *********  .*. **..

51. spacer 4.32|2799568|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018666 (Sphingobium amiense strain DSM 16289 plasmid pSAMIE_3, complete sequence) position: , mismatch: 9, identity: 0.735

atctgttcgcggctatcgatctggccaatccctg	CRISPR spacer
atctgtgcgcggctctcgatctggaagacaccca	Protospacer
****** ******* *********  .*. **..

52. spacer 4.51|2800823|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043059 (Dolichospermum sp. UHCC 0315A plasmid pUHCC0315c, complete sequence) position: , mismatch: 9, identity: 0.735

ctgaaacataccttcgcgccaagcaaatgctttt	CRISPR spacer
tttagccgcaccttctcgccaagctaatgcttta	Protospacer
.* *. *..****** ******** ******** 

53. spacer 4.51|2800823|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NC_007410 (Trichormus variabilis ATCC 29413 plasmid A, complete sequence) position: , mismatch: 9, identity: 0.735

ctgaaacataccttcgcgccaagcaaatgctttt	CRISPR spacer
cttagctgcaccttctcgtcaagcaaatgcttta	Protospacer
** *. ...****** **.************** 

54. spacer 4.51|2800823|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047243 (Trichormus variabilis 0441 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ctgaaacataccttcgcgccaagcaaatgctttt	CRISPR spacer
cttagctgcaccttctcgtcaagcaaatgcttta	Protospacer
** *. ...****** **.************** 

55. spacer 4.55|2801087|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to MN657118 (Psychrobacter sp. strain ANT_P53 plasmid pA53P4, complete sequence) position: , mismatch: 9, identity: 0.735

ttctcttgaagttaaagacgctgctacagatgca	CRISPR spacer
ctatcttgaagttaaggaagctgctactaaagtg	Protospacer
.* ************.** ******** .* *..

56. spacer 3.1|1933087|33|NC_010995|CRISPRCasFinder matches to MK798157 (Enterococcus hirae strain fas4 plasmid pfas4-1, complete sequence) position: , mismatch: 10, identity: 0.697

tcttctttgccgattcaaaagtgacccgtgtca	CRISPR spacer
gattcgttggcgattcaaaagtgaccaaacccc	Protospacer
  *** *** **************** .  .* 

57. spacer 3.1|1933087|33|NC_010995|CRISPRCasFinder matches to NZ_MF807214 (Streptococcus thermophilus strain CS17 plasmid CS17-C, complete sequence) position: , mismatch: 10, identity: 0.697

tcttctttgccgattcaaaagtgacccgtgtca	CRISPR spacer
gattcgttggcgattcaaaagtgaccaaacccc	Protospacer
  *** *** **************** .  .* 

58. spacer 4.41|2800163|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to KC699836 (Bacillus phage SIOphi, partial genome) position: , mismatch: 10, identity: 0.706

tttcttatcccttggtgtcaatttcaatattaat	CRISPR spacer
cgcagcatccctcggtttcaatttcaatattgac	Protospacer
. .  .******.*** **************.*.

59. spacer 4.53|2800955|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 10, identity: 0.706

cttccgtgttacctgtctggttgtagtacccgct	CRISPR spacer
acgatgaattacctgtctggttgtagcatccgca	Protospacer
 .  .* .******************.*.**** 

60. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to AP013564 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C5-MedDCM-OCT-S33-C6, *** SEQUENCING IN PROGRESS ***, 4 ordered pieces) position: , mismatch: 10, identity: 0.706

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
cgctgactctgcctagcagtgatggcaacgccaa	Protospacer
*..********* ********** *** *   ..

61. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to AP013528 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G3, isolate: uvMED-CGR-C7A-MedDCM-OCT-S41-C23) position: , mismatch: 10, identity: 0.706

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
cgctgactctgcctagcagtgatggcaacgccaa	Protospacer
*..********* ********** *** *   ..

62. spacer 4.66|2801817|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to AP013982 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S44-C91, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.706

cattgactctgcgtagcagtgatcgcatccaggg	CRISPR spacer
cgctgactctgcctagcagtgatggcaacgccaa	Protospacer
*..********* ********** *** *   ..

63. spacer 4.32|2799568|34|NC_010995|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048424 (Rhizobium daejeonense strain KACC 13094 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

atctgttcgcggctatcgatctggccaatccctg	CRISPR spacer
tcaccttcgcggctgtcgatctggtcaatgagcg	Protospacer
 . . *********.*********.****   .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 404573 : 412790 10 Leptospira_phage(28.57%) transposase NA
DBSCAN-SWA_2 1461314 : 1497790 37 Leptospira_phage(28.57%) coat,protease,transposase NA
DBSCAN-SWA_3 1919777 : 1926482 11 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 3617768 : 3657556 31 Synechococcus_phage(20.0%) plate,tail,protease NA
DBSCAN-SWA_5 4111698 : 4120894 11 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_6 4474724 : 4550844 59 Shigella_phage(37.5%) holin,integrase,transposase attL 4531189:4531209|attR 4551776:4551796
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage