CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	4 crisprs	c2c10_CAS-V-U3,cas14j,cas6,cas8b1,cas7b,cas5	0	39	1	0
NC_010516	Clostridium botulinum B1 str. Okra, complete sequence	7 crisprs	DEDDh,csa3,DinG,c2c9_V-U4,WYL,cas3,cas14j,csm3gr7,csx19,cas10,cas6,casR	0	10	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010516_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010516_1

469235-469330

Orphan

Consensus_repeat	Method
GTAGCAACAACTGCATTTAATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010516_1

>merge|NC_010516|1|469235-469330|CRISPRCasFinder
GTAGCAACAACTGCATTTAATAAAGCAGATGCAACTGTTGAATCATTAACTGATGCAAAAACTACTTTAACTGAAGCAACAACTGCATTTAATAAA

>NC_010516|1|1|469235-469330|CRISPRCasFinder
GTAGCAACAACTGCATTTAATAAA	GCAGATGCAACTGTTGAATCATTAACTGATGCAAAAACTACTTTAACT
GAAGCAACAACTGCATTTAATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010516.1\|WP_015957674.1\|486473_487346_+\|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl\|CDD\|223646
NC_010516.1\|WP_079991824.1\|481991_483023_-\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NC_010516.1\|WP_003399381.1\|469843_471913_+\|cell-wall-binding-repeat-containing-protein	unknown	unknown	gnl\|CDD\|380277
NC_010516.1\|WP_004451370.1\|457254_458187_+\|RnfABCDGE-type-electron-transport-complex-subunit-D	unknown	unknown	gnl\|CDD\|376991
NC_010516.1\|WP_003399376.1\|463097_463490_-\|NusG-domain-II-containing-protein	unknown	unknown	gnl\|CDD\|377759
NC_010516.1\|WP_003399385.1\|478498_481906_+\|cell-wall-binding-repeat-containing-protein	unknown	unknown	gnl\|CDD\|227604
NC_010516.1\|WP_015957680.1\|463603_464638_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NC_010516.1\|WP_015957874.1\|487381_488212_+\|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl\|CDD\|223654
NC_010516.1\|WP_003399387.1\|483460_484972_+\|DUF5050-domain-containing-protein	unknown	unknown	gnl\|CDD\|227604
NC_010516.1\|WP_003399388.1\|485367_486279_+\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270371
NC_010516.1\|WP_003399384.1\|477522_477957_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_015958027.1\|488213_488960_+\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224042
NC_010516.1\|WP_004451372.1\|458186_458858_+\|RnfABCDGE-type-electron-transport-complex-subunit-G	unknown	unknown	gnl\|CDD\|273889
NC_010516.1\|WP_003399383.1\|472547_477452_+\|leucine-rich-repeat-protein	unknown	unknown	gnl\|CDD\|372554
NC_010516.1\|WP_004451376.1\|459523_460102_+\|electron-transport-complex-subunit-RsxA	unknown	unknown	gnl\|CDD\|130998
NC_010516.1\|WP_004451374.1\|458868_459471_+\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
NC_010516.1\|WP_015957547.1\|461296_462385_+\|cell-wall-binding-repeat-containing-protein	unknown	unknown	gnl\|CDD\|367829
NC_010516.1\|WP_015957655.1\|455912_457232_+\|electron-transport-complex-subunit-RsxC	unknown	unknown	gnl\|CDD\|273888
NC_010516.1\|WP_003399375.1\|462543_463080_-\|Gx-transporter-family-protein	unknown	unknown	gnl\|CDD\|377839
NC_010516.1\|WP_004451377.1\|460115_460949_+\|Fe-S-cluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|235941

Protein	Function_ID	Function_description	E-value
NC_010516.1\|WP_015957674.1\|486473_487346_+\|phosphate-ABC-transporter-permease-subunit-PstC	gnl\|CDD\|223646	COG0573, PstC, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	2.83487e-67
NC_010516.1\|WP_079991824.1\|481991_483023_-\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	2.59988e-18
NC_010516.1\|WP_003399381.1\|469843_471913_+\|cell-wall-binding-repeat-containing-protein	gnl\|CDD\|380277	NF033435, S-layer_Clost, S-layer protein SlpA. In Clostridiodes difficile, the S-layer protein precursor, SlpA, is one member of a large paralogous family of protein that share several cell wall-binding repeats. SlpA is cleaved into a larger and smaller protein. The S-layer protein itself is important to adhesion, and portions of it are highly variable, and then N-terminal and C-terminal are well-conserved.	7.77933e-29
NC_010516.1\|WP_004451370.1\|457254_458187_+\|RnfABCDGE-type-electron-transport-complex-subunit-D	gnl\|CDD\|376991	pfam03116, NQR2_RnfD_RnfE, NQR2, RnfD, RnfE family. This family of bacterial proteins includes a sodium-translocating NADH-ubiquinone oxidoreductase (i.e. a respiration linked sodium pump). In Vibrio cholerae, it negatively regulates the expression of virulence factors through inhibiting (by an unknown mechanism) the transcription of the transcriptional activator ToxT. The family also includes proteins involved in nitrogen fixation, RnfD and RnfE. The similarity of these proteins to NADH-ubiquinone oxidoreductases was previously noted.	1.77221e-156
NC_010516.1\|WP_003399376.1\|463097_463490_-\|NusG-domain-II-containing-protein	gnl\|CDD\|377759	pfam07009, NusG_II, NusG domain II. This domain is found in some NusG proteins where it forms domain II. However most NusG proteins are missing this domain. In other cases this domain is found in isolation. The function of this domain is unknown.	2.6932e-34
NC_010516.1\|WP_003399385.1\|478498_481906_+\|cell-wall-binding-repeat-containing-protein	gnl\|CDD\|227604	COG5279, CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain [Cell division and chromosome partitioning].	9.37232e-21
NC_010516.1\|WP_015957680.1\|463603_464638_-\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	4.78706e-130
NC_010516.1\|WP_015957874.1\|487381_488212_+\|phosphate-ABC-transporter-permease-PstA	gnl\|CDD\|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	1.64639e-60
NC_010516.1\|WP_003399388.1\|485367_486279_+\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.77171e-86
NC_010516.1\|WP_003399387.1\|483460_484972_+\|DUF5050-domain-containing-protein	gnl\|CDD\|227604	COG5279, CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain [Cell division and chromosome partitioning].	7.28383e-20
NC_010516.1\|WP_015958027.1\|488213_488960_+\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224042	COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism].	1.08144e-125
NC_010516.1\|WP_004451372.1\|458186_458858_+\|RnfABCDGE-type-electron-transport-complex-subunit-G	gnl\|CDD\|273889	TIGR01947, Electron_transport_complex_subunit_G, electron transport complex, RnfABCDGE type, G subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit. [Energy metabolism, Electron transport].	3.0911e-39
NC_010516.1\|WP_003399383.1\|472547_477452_+\|leucine-rich-repeat-protein	gnl\|CDD\|372554	pfam13306, LRR_5, Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.	2.42307e-32
NC_010516.1\|WP_004451376.1\|459523_460102_+\|electron-transport-complex-subunit-RsxA	gnl\|CDD\|130998	TIGR01943, Electron_transport_complex_protein_rnfA., electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit. [Energy metabolism, Electron transport].	3.30327e-76
NC_010516.1\|WP_004451374.1\|458868_459471_+\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	5.07092e-101
NC_010516.1\|WP_015957547.1\|461296_462385_+\|cell-wall-binding-repeat-containing-protein	gnl\|CDD\|367829	pfam04122, CW_binding_2, Putative cell wall binding repeat 2. This repeat is found in multiple tandem copies in proteins including amidase enhancers and adhesins.	3.40913e-14
NC_010516.1\|WP_015957655.1\|455912_457232_+\|electron-transport-complex-subunit-RsxC	gnl\|CDD\|273888	TIGR01945, Electron_transport_complex_subunit_C, electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport].	0
NC_010516.1\|WP_003399375.1\|462543_463080_-\|Gx-transporter-family-protein	gnl\|CDD\|377839	pfam07456, Hpre_diP_synt_I, Heptaprenyl diphosphate synthase component I. This family contains component I of bacterial heptaprenyl diphosphate synthase (EC:2.5.1.30) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7.	5.15968e-48
NC_010516.1\|WP_004451377.1\|460115_460949_+\|Fe-S-cluster-domain-containing-protein	gnl\|CDD\|235941	PRK07118, PRK07118, Fe-S cluster domain-containing protein.	3.5046e-126

>NC_010516.1|WP_015957680.1|463603_464638_-|FAD:protein-FMN-transferase
MKIKYVTILILCICLPLVFVGCNSKPEEPVSRETYLMGTIINIKAYGKNADKAVQSSVDKISDIENKMSINISTSEVNKINKNAGIAPVKVSKNTFDVVKASLIYSEKTKGSFDITVEPLVSIWGIGTDKARIPSKDEINNALKLINYKDVVINEKESTVMLKRKGQAIDLGAIAKGYTADELKKVLLNYNVSSAFLSLGGNVYVLGNKPDKTPWKIGVQNPLEPRGDYLGIVSVSDKSVVTSGNYERFFERNGKRYHHIFDTKTGYPAEKGLISVSIISDKSIDGDALSTSVYTLGLDEGKKLIESLKGVEAIFVTNDKKVYVTSGLKDIFKLTNTDFKLQNK
>NC_010516.1|WP_003399376.1|463097_463490_-|NusG-domain-II-containing-protein
MKKGDKIVIYIISILLALSVISIIFFKFFVKSENAVAVIKQNGKIIEKVDLSKVKEKRQLKINYNDRDHKGYNVIEIDKGSIRFIDADCPDKVCIKSGVLKKPGETAACLPHKLIITIEKNDKEVDEVSY
>NC_010516.1|WP_003399375.1|462543_463080_-|Gx-transporter-family-protein
MKNKNYNTRKMIFLSLMVGIALIIYIIEAQIPVLFPGIKLGLANVISLVTLIMLGGYEALLVMFLRTLLGSMFAGNMSSFMFSLAGGFLSNIIMIILYYKFKENLSLSSISICGAIFHNIGQLFIAAFVVKDFRIYVYLPVLMISGIITGYFIGLCTKYLNKNLGNVKLFNELKNNEK
>NC_010516.1|WP_015957547.1|461296_462385_+|cell-wall-binding-repeat-containing-protein
MLKKNKKILSVITATLVMAIGISFTNVQAASIKRMNGSNRIDTANKTAKEIFQKSEAVILVNGTGYADAVSSAPLSKLLNAPILLTENKGALESDVLKTINDLQNVKKIYIVGGTGVVSTTMENSLKSKGFQVIRYDGQKYGDKTRYGTNARVAEEILKLSPKSKTGILVNGQDGYADALSVASVAATNGYPVLFGNTQNVPNVIKNNIISKNKLQILAVGGSGVLPSSVVSSVSGKKITSDAQSKNRFQTNLAVLEYFKGKGGLDFSNVYIAAGGQAGKAGQSQFADALVASAAAAKTGSPLVLSGLGAGTTEIANAEKFVETNIEDEGNLVIVGGKASVSESVEQKLDEKVGDFRILDVF
>NC_010516.1|WP_004451377.1|460115_460949_+|Fe-S-cluster-domain-containing-protein
MNELLFPILSLGALGLLFGVLLGYASKKFAVEVDPKVPLIRDSLPGANCGGCGYAGCDAYAQAVAEGAAPPNACTVGGAGVASKVAEIMGVSVDESEPLKAYVKCNGTCDKAKQRGEYYGTIDCQQASVVPGGASKSCQAGCLGLGSCVKACAFDAIHVTEGGTAEVDPEKCVGCGACVKACPRAVIDLKPLSAVIRVACNSKDTLKAVKDVCQVGCMTCRLCEKTCPVKAITMENNLPVVDKEKCVKCMACVKKCPTNALIAYGKDIVVKEEKPAN
>NC_010516.1|WP_004451376.1|459523_460102_+|electron-transport-complex-subunit-RsxA
MKIFALIISALFVNNFVLSRFLGICSFLGVSKKVETATGMGLAVTFVMALASLISYIVYNAILVPLNITYLYTIAFILVIAALVQFVEMVIKKKSPGLYKALGIFLPLITTNCAILGVVIINMNDKLNLIESLIFGTFSGVGYMLAIVLLAGLRERMEACDKMPKAMEGLPISLITAGLMAIAFLGFQGLLH
>NC_010516.1|WP_004451374.1|458868_459471_+|electron-transport-complex-subunit-E
MMSVLGERLKNGIIDENVTFVQVLAMCPTLAVTSSAQNGIGMGLASTVVLMGSNLVISLLRKAIPEKIRIPSFIVVIAGFVTLLQFLMQGFVPALYQSLGIFIPLIVVNCVILGRAEAYASKNGPVASIFDGLGQGLGFTLSLTVIGMIRELLGAGQLFGHQIMPSSFQPALIMILAPGAFFTLGILMAIINNRKLKKAK
>NC_010516.1|WP_004451372.1|458186_458858_+|RnfABCDGE-type-electron-transport-complex-subunit-G
MEKNETLKLGLKLFIITAIAGLILGGAFVITKKPIEAQVEKTNTEAMKEILPKADKFEKVEGKAKDAVTEVNEGKKGNDVAGYAIKVLTKGYGGQIEMMVGVSKEGKVEGIKILSHSETPGLGANAPQPKFSGQFKGKSTEKDLEVVKTAPGKDNEIEAMTGATITSKAVTKGVNDAVKFYKDELLKTPSNNKEVDGKSGATTSFNTEDPKVNNYVVNYEKMN
>NC_010516.1|WP_004451370.1|457254_458187_+|RnfABCDGE-type-electron-transport-complex-subunit-D
MSESMYTLSSSPHIRSKDSVQSIMRDVVIALLPATAAGIYFFKLKALLVILTAVISCVAAEYIWEKATGRDISIGDLSAVVTGMLLAFNVPPTLPLWMVVIGSFFSIIVVKQFFGGIGQNIVNPALAGRAFLLASWPVAMTTWTVDGVTTATPLAILKGAPGELPNLASAFVGHIGGCIGETSALALLIGFAYLLYRRIITWHIPVAYVGTVFVLTTIIGRHGAMSGNAIYEIFVGGLMLGAIFMATDYTTSPMTKKGQVIFAIGCGVITTVIRIFGGYPEGVSYSIILMNLFVPLIDKFLAPRVFGEVK
>NC_010516.1|WP_015957655.1|455912_457232_+|electron-transport-complex-subunit-RsxC
MELLTFKKGVHPPHGKYLTEKKPIEEYLPKGDLVFPMSQHIGAPCNPIVKKGDRVLVGQVIGEATGFVSAPIHSSVSGTVKNLAPVLTAAGTKVMAVIVENDGQYEEIEMPKPKDYNEMTKEEIIKLIQQAGIVGMGGACFPTHVKLSPPPDKKIDSIIVNAAECEPYLTCDHRLMLEESDKIVEGLKIILKIFPEAKGYIGIENNKPDAIEAMKKASEGIANIEVKALKTKYPQGAEKQLIYAIKGREVQSGKLPADAGCVVQNTATVREIYNAVVLGRPLTERIITVTGEAVKEPKNIRMKLGTNLRELVEFCGGYKEDPVKVISGGPMMGMTIPTLDIPTVKGSSGLLSLTAAQAVLPQASSCIRCGRCVEACPMNLIPSTLDSLSNRGELASFEELHGIDCIECGCCTFVCPAKRHLIQSIRTAKRTVIASKRKK
>NC_010516.1|WP_003399381.1|469843_471913_+|cell-wall-binding-repeat-containing-protein
MVKSKEKNKIFFTLLAITLIFIVNSNKVKANDEINFRRLDGKERYETSASICSGGWDTSEYAVLASGEGFADALSAAPLAKKYDAPIILTGKNKLNDNAKDQLKKLDTKEVIIVGGPGSISEDIVTELKDLGIKVNRIYGEDRYKTSLKIAKEIGVKNGIVVTNGLGFADALGMAPIAASKQMPILLTPSDKLTSDTMEFLKKSSYNKSYVLGGTATVSDYIKNSLKNPTRLSGADRYKTNIAILNHFKGDLNLDEVYIASGDGYADALSGSVLASKNKSPIILINDNLNKSTKDFVSTNKYNFKNVTIFGGEAVVKEPTISSLFGAFRSGETRSDTKEVVAEKWDRSYLKDYHIDLPEGGKLDIEYDINNFTRFDLIVLDIKNNEIIKKSYNYLKNNKSIHDNYNDIRLPKGKYIVRVHAFNMDGTYTIKAKYTQEGEGFEKESNNDIKTANVIEPNKSIIGSIHSYNDVDYYKFTLNEKGSLKINLKHNQYGRYGFKVSLVDENNKSIAEFISGGEDINSYSNKLRLSKGTYFVRIECEKWNDEPLQYELNLVYDIEGENYESEPNDYIQDANYIKCDKEYIGNIQSISDRDYYKINLNSDSKITINFKHDEGYGKWTIYLCDKDNKPIKRFKSYGYEISKDFDPVELEAGEYYVSVEGIDSIDYTINVKREAPDKSNNENKKVKRR
>NC_010516.1|WP_003399383.1|472547_477452_+|leucine-rich-repeat-protein
MNKKGTRALASAAAIGIVLTMLPSGNVKAAPGDVNKMPGKDRYETAANVATANWKEGAENVIIASGDGYADSLSASVLAKKLNAPIILTKSQELHKSAKEALKTLKAKNLYVIGGNASVSQSIRDDLKKEGYALTELGGKTRFETNLAIANYLVEKHNVKADEILVVNGKDGFSDALSAAPVAAAKGQILLIVGKDPSTADLAAKFIEEHNSKVIVIGTEKVIPKTVYDKLGAKERVIGGANRFETNLNIMKHFKLNTDKLYVANATGDGYADALVASALAGRTGSQLILTHTKDSQETKNAIEYIKSIRNDKTEVGLVGGDSVIPKEVVDKIKEVVKEESTKNPGKPSRPSKPSKPTEPEKNKFEIIWSFADVDEDLDVNTTNGKDDAKHDYVYIKFNKPISVSGDSKSVLNTSNYKLNKMPLPKGTEIKPNIKGLDDADKVTDSITIVLPNEYLNGKNEPHIITISSYLESSTTGDVLTNGGDKILTWSSDGREIFNVSFSAEKQIYLAEVTAKKDLTLKDNLINAEKALETAKAAIKSLNNKTSGKSALEERVNDVEKTVKDARIKFDEKTDFEFSNGKITKYMGNEIDIVIPEAIRGEKVTAIEDSAFKNKNLTSVKIPKTVESIGMQAFAKNNLTSIELPESLKYMGNIVFMDNKLTSVRIPKNLTIIPTGAFSKNEISSVVISEGVIEIALSAFAENKLESVVIPSTVEFIRNKAFSGNQLKVVNIPSNVKDIGKDAFANNKNIKLAYYKLIEAIKRAESIKTEGEDADKVKVLKEAIEEGNKLNDKPNATLEEVNKVVESINNAIEALNKESSKTTIKQIKPLGIKNIDVDFGTTEANVKAKLPQKVRIVDSKDKEHNVDINWSILKYDGNVAADYTATGTFKLPEGVLQSNPETDLEVVLKITVIPKGVESREWELKDFTFKGTAITGFSESGKEKFKKSKDLSLPNTNESGEKINEIADKAFCSKFEIKGDSNESFKDKDKAKQDSKIGINSVIIPNTVKIIGKEAFRNNCLTDINIPKSVTTIKDLAFNNNKLKTLSIPDSVTELGNGAFTLNDIADLKLSKELKTIPAAFGYNNLVSVTIPEGVTRIEDMAFSDNKLDQVTLPTTLEYLSGFNNNNLKSINIPTSVTELGKKAFARNKISSVKVPGNVKKIGVSAFQNTWHDTFLTSIIIEDGVEKIDEYAFSLNHLKDVNIPKSVKELAPNAFHKNLGYDGVVHLFTDNYNNPNNLKESKYQVIDPAKLTIKYISEDKTLKEEEICKIGKKEGKEKYLHIGDKDIEITPKYEDNKYELEDTDVKKVDLNYKENKLIVKCKKKDSVDKLTIKSIGEVAPVVVDFGTEQNVVMDKLSKNTYIVDSNGENHEVELNWTIKNYNGNVPGEYTAVGIFKLPQGISQSEPEITLEVQGRIIVKEDFENIQDSKWGVEDFNFEGTILAGFSGKGEEKLKANKDLILPKANDKGEVITKVKNYAFAKNGLTSLAIPKGLNGLVIGTNAFEENQINTLYIPEGVKEIDAYAFSKNKLKYVDFPGTLKKIGNHAFADNQLVSAIFSEETNMIAIDRFSFANNKITSIILLNDVTKVNGEAFTGNQSCNSDGKVHIFTKSFDPNNCNQWFPDSQYHKIIPLNK
>NC_010516.1|WP_003399384.1|477522_477957_-|hypothetical-protein
MNKGKNKFIILGIVIVVLLGVFSYNQYQKKAKFIGTPLEPIYKIVKIQNFKEGTYEEYKELFANPNKAITKEQFEAYRNSNKSNDMFKYDGDSIKGIMKHMKSEEKGTDLYKVYYLKNVKDDNEKKDANYWMVVKENNKWVIKN
>NC_010516.1|WP_003399385.1|478498_481906_+|cell-wall-binding-repeat-containing-protein
MKKFKRALASSTILALVLQTNIIGGNVQAYDGQVKRFEGNNRYETAAKLAAFNWTKSDNIVLVSGEGYADALSASVLAKRLNAPIILTNSNNLNDNARKTIEKLKAKNIYVIGGEASVSSKIRSELKNNYKLIELKGKDRFETNLNVAEQLVKLGVDASEVMVVNGRDGFSDALSAAPIAAANGQILLIVSKDDGNTATEFIQKHNSKSIVIGTKNVVSDKIYNNIGASRRVDGGANRFETNLKILKEFNVKVDTHLYIANSTGKGYADALVASVLAGKFSAPLILTDTKDSKDTEKALKYIKDNIKGMTEVNAVGGKVVIPQSITEDINKYIKKKPELKPDKPEPKPDKPEPKPDKPEPKPNKPEPKPDKPEPRPDKPEPKPDKPEPKPENKAPIATRTLNKSTYNITKSKSEITVNLKDLNNDGDQSDIAFKDPDGDKLTYTATIDGENKDKAEVTVKDSNITIKTKQEFKGQVKITVIASDGKKSVSDFFKVNVDNIDNKEKIKTINANLVEKEKAKLNLGDLNNIIGDLNLPVKGENGVEIAWKSTNVNIINNAGKVTRPKATEGDAVITLTAILSKGEAKDTKDFVVTVKAKEFTDEELVDISLKDLKLEGNLNSVIDNIKLPIRDEKNKVSIEWKSSNNNILSNTGVVKRTNKDENITLTAVLKRGTIKKNKEFNIIVKANEAKTEDNLKLISDSLKIDNINSIEKDINLETSLDGANIIWKSSNEAIIDNTGKVKRPIVGRPDANVVLTATISKDEKSVTKEFNVIVKAEKQLVANNKQEFDEIIKKAVIDCEPTINISLPSFNSNNNEYNFDNYQNLMVEIGGMDFGKPGISGSYKNDGTGWKIEINFKYKKDISEIKRQKEATMAEVKRIVKSIIKPDMTDFEKELALHDYIVRTADYNTVNYKNGINALEDHTAYGVLVDHIGVCESYAKAMSLLLEEVGIECKYVTGVSVHDGKAGGGHAWNMVKLDNEWYNLDATWDDPVSDRNGAESVNKNTNSMATVNHTYFNIPDSIFNKDHKRGNFEQNYPACTATKYSYNNMDVDEYTADGKLIKKVTTKDELDAEILKALKEKNSALSLRIKGFKMTQKELSAELEKVANNNSVGALKWITSSPDEYHVNYTIQWTN
>NC_010516.1|WP_079991824.1|481991_483023_-|acyltransferase
MREVIKIKNKRIASMDLLRALSTIAVILIHVTGTILYNSNSKSLTYNSSLVLNQLTRFSVPAFIFLSGFGLALSYKKESKYLTYLGHRLKKVVPDYFAWYIVYIFLLEDINLSYHDKIISIFHGTLYYHFYFVPIIIILYLIFPIFYNFFRTKLALFITFFLNMGVYILLRYPNIPKSISENLTRESVISWIFYFVLGVYFCSNYDKVHIFIKKHRNKLLFLLLLSTYILLKDTFLCLRANNDLDYGTTFIRPSVMLFSIFFILYIMSFNFNNLSFKKIFYMISKHSYTIYLSHPLLLYWLKKYYIENKYIIGSYKFFIIVFFTCFIGGLSISILINKFKKLL
>NC_010516.1|WP_003399387.1|483460_484972_+|DUF5050-domain-containing-protein
MKKARQILYLIILIFSLNVSNVLAADNIKKYPAPDVEKRSYSTTVTYNKYLYDNILNGLINLKDKVDTSAYSKNADEVFKVLEKVLDDHPEIFYFDYENCSFWSNGILELGYRGNKETINTMRQQLDTKVQSIINNVITKDMSELEKEMAIHDYIVLNTKYDEEALNGNISSELIFTSYGCLVNNFAVCDGYAKAMQLLLNKVGVYTIRVTGDGNGVSHAWNIVRINGKNYQVDATWNDPVPDSGYVRYKYFNMSDADIAKDHHWVKSDFPACNDNSFKYLHKADYVVKDLDYIYYSNNEDDYNLYKIKIDGSNNQMLTEDRAVNLVYYNDYIYFSNYSDGGTLYKVKNDGTELEQILDNHVENLHYSNGYLTYHNEDLSKDDRMKLEQIVYEVENKEKFNEFFSSYKDWGQAKEVPRNKIWKISFNRAVNSENLKDQVYVMNSSFNKVTDVDVNINEGKNIIITKKTPYKRGGLYYLVISKPIKDIKGKEIKEPVVMKFKIY
>NC_010516.1|WP_003399388.1|485367_486279_+|phosphate-ABC-transporter-substrate-binding-protein
MKKKLSVVLSVLLTSALLFTACGGKQTSNSNEESSKKESGKIMCIGSSTLAPVVSKAGDTLKSKHGTWKKMNDKLPDENIELAVSSGGSGAGVKAALEKTANFGLISREVSKDEKAKMKEYNEIKIGYDALTLSVNPQNPILKNKKGLTSEEIQKIFSGEAKTWKDVDPSLPANKIVLVVRDAGGGAAEVFQKAVMGDKKVSKDAVQAPSMGALTQKVIENKDAIGYASVGLVDQNKGKLTPMEVDGIAPTKENITSGKYKIARPLLLIKDGKLTGVEQTFVDFLKSEEGLKIIDESGFVSIK
>NC_010516.1|WP_015957674.1|486473_487346_+|phosphate-ABC-transporter-permease-subunit-PstC
MKILYKFWDKVFYYIIKFFTFLSIVILSLILIFILKESLGIFKNISFIDFITKSTWEPLGKSPKLSILSFIMSTIYVTFLAVIIALPIAIGTSIFLANIASERLRNILKPIIDMLSGIPSVIYGFIGLSVVVKFFERRLGVSSGECILSAAIVLAIMILPFIISNCTDTMIKVYDKYFIYSKSLGISKWYMMNNLIIPASKKAILASVILAVGRGMGETMAVMMVIGNSTLMPKLLGKGETIPSLIALEMGSAQVGSMHYNGLFASGLILMIMLFIINFIFYMLKKNMQQ
>NC_010516.1|WP_015957874.1|487381_488212_+|phosphate-ABC-transporter-permease-PstA
MKRSLKDILLLLWYFLSTFLVVFIVFFIIAYVFKNGIHTINKDFLLDNPKGMPLGKEGGIFPAIVGSLLLMFISSITASILGIATAVYLTLYNKNKKIDSIIHIIIHSISGIPSIVLGLFGYSFLVFFLDLGVSLLAGAITLSIMIFPYIEVVTEKAIEEVDKKLIVSSYSLGIDKTYTFLKIILPQCIEEIVSGIMLSGGFAMGATAPIMLTSAVISAPTPDSIMSPVMALSYHLYILISQGISMENAYGTAFVLMSILIILNFLSMLIVRRRRV
>NC_010516.1|WP_015958027.1|488213_488960_+|phosphate-ABC-transporter-ATP-binding-protein
MNILETNNLNVYLDKNHILKNLNLNIEKNKVTAIIGPSGCGKSTLLKTLNGIIKEEINFSIEGDIYFNGENTESISLELLRRKIGCVFQSPAPFPFSIYKNFNYVLKYYGIKDKSKVNKIIEEKLKLVGLYDEVQDNLNMSALKLSGGQQQRLCIGRALLPEPEILLMDEPCSALDIKNTAIIEKLLLELKKKYTILIVTHNLAQAKRISDSTIFMLNGEVIEMGETEKVFNSPQNEETKNYIRGIYG

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Crispr_ID: NC_010516_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010516_2

1031265-1031361

Orphan

III-B

Consensus_repeat	Method
GCTGAACATTAACATGAGATGTATTTAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010516_2

>merge|NC_010516|2|1031265-1031361|CRISPRCasFinder
ATTGAACATTAACATGAGATGTATTTAAATCTTATTTTCGCTGTATTATCCAACATTATTTTTCACGTTGAACATTGACATGAGATGTATTTAAGCA

>NC_010516|2|2|1031265-1031361|CRISPRCasFinder
ATTGAACATTAACATGAGATGTATTTAAAT	CTTATTTTCGCTGTATTATCCAACATTATTTTTCAC
GTTGAACATTGACATGAGATGTATTTAAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010516.1\|WP_003404066.1\|1040335_1041208_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_010516.1\|WP_003401787.1\|1028612_1030208_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|234688
NC_010516.1\|WP_003401409.1\|1018628_1020236_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372624
NC_010516.1\|WP_003401799.1\|1034962_1035934_+\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|234919
NC_010516.1\|WP_003401783.1\|1023790_1024819_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_010516.1\|WP_003401786.1\|1027988_1028534_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_010516.1\|WP_003401782.1\|1023119_1023791_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_010516.1\|WP_015957862.1\|1020599_1022960_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|213222
NC_010516.1\|WP_003401785.1\|1025939_1027646_+\|SEL1-like-repeat-protein	unknown	unknown	gnl\|CDD\|276807
NC_010516.1\|WP_079991833.1\|1039704_1040367_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235504
NC_010516.1\|WP_011987828.1\|1017320_1018091_+\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_041173284.1\|1038591_1039275_+\|cobalt-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274139
NC_010516.1\|WP_003399487.1\|1038314_1038614_+\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|179494
NC_010516.1\|WP_015957698.1\|1041343_1042804_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|273643
NC_010516.1\|WP_003401784.1\|1025170_1025719_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NC_010516.1\|WP_003401791.1\|1032012_1032777_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NC_010516.1\|WP_015958091.1\|1037591_1038311_+\|energy-coupling-factor-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181384
NC_010516.1\|WP_015958067.1\|1033479_1034961_+\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838
NC_010516.1\|WP_015957928.1\|1036318_1037407_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|180542
NC_010516.1\|WP_003401789.1\|1030486_1031044_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|235612

Protein	Function_ID	Function_description	E-value
NC_010516.1\|WP_003404066.1\|1040335_1041208_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	3.39557e-147
NC_010516.1\|WP_003401787.1\|1028612_1030208_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	4.87939e-34
NC_010516.1\|WP_003401409.1\|1018628_1020236_+\|hypothetical-protein	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	0.00326498
NC_010516.1\|WP_015958091.1\|1037591_1038311_+\|energy-coupling-factor-ABC-transporter-permease	gnl\|CDD\|181384	PRK08319, PRK08319, energy-coupling factor ABC transporter permease.	1.78661e-119
NC_010516.1\|WP_003401783.1\|1023790_1024819_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.59931e-60
NC_010516.1\|WP_003401786.1\|1027988_1028534_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.4603e-18
NC_010516.1\|WP_003401782.1\|1023119_1023791_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.23531e-64
NC_010516.1\|WP_015957862.1\|1020599_1022960_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.96201e-111
NC_010516.1\|WP_003401785.1\|1025939_1027646_+\|SEL1-like-repeat-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.61879e-42
NC_010516.1\|WP_079991833.1\|1039704_1040367_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235504	PRK05562, PRK05562, NAD(P)-dependent oxidoreductase.	7.03089e-104
NC_010516.1\|WP_003401799.1\|1034962_1035934_+\|cobalamin-biosynthesis-protein	gnl\|CDD\|234919	PRK01209, cobD, cobalamin biosynthesis protein.	1.78901e-154
NC_010516.1\|WP_041173284.1\|1038591_1039275_+\|cobalt-ABC-transporter-permease	gnl\|CDD\|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	7.05853e-28
NC_010516.1\|WP_003399487.1\|1038314_1038614_+\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	gnl\|CDD\|179494	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein.	6.91474e-40
NC_010516.1\|WP_015957698.1\|1041343_1042804_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|273643	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	3.50555e-119
NC_010516.1\|WP_003401784.1\|1025170_1025719_+\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	9.85562e-39
NC_010516.1\|WP_003401791.1\|1032012_1032777_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	8.43623e-51
NC_010516.1\|WP_015958067.1\|1033479_1034961_+\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NC_010516.1\|WP_015957928.1\|1036318_1037407_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|180542	PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.	2.29892e-91
NC_010516.1\|WP_003401789.1\|1030486_1031044_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl\|CDD\|235612	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated.	2.20709e-84

>NC_010516.1|WP_003401789.1|1030486_1031044_+|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MSDKNKVALITGGVRSGKSEFAESLLQNEKSVLYIATAKITDKEMEHRVEKHKERRNSTWKTYEGYKDLGKIIKYYDEKNILLDCVTVMTTNLMFHKKIDYENIKEEQLDEILEGIKKEFYDLIISVKEENKNIILVTNEVGYSIVPAYKLGRIFRDFQGIINKFIASLSDEVYLVTCGIPLKIK
>NC_010516.1|WP_003401787.1|1028612_1030208_+|UvrD-helicase-domain-containing-protein
MKLESGQNRIAKSKHLGYGLLRGSEGTGKTTAAIYRGIYLRNQYCMYDKDKVLILSKNEENLNYIKNIYDEAEKTGGQYITLFSYIEDKLYFSVIYKIINKYFWEYIENNNLQCKIASEEEKLAIVEECISNVKDEYKNLKYIDIKYSKFFLEEIQWTKDCMYYELEEYKKADRIGRKAKKGEGPQRIIKNSKIREAVFKIMLLYNEKLKDKNLVDYSDVVSMSLKEASKNKENKFNHIIVDEAQNFTKLELKFIEALGRKNIYSSILFIADKEESSNPKGWITKGRKLNNLQLGFEFKRFNLNKKISINLKENIDDCNLKRKVSNIDTKNEDVSNIGNANSEDKVLDKNIKNEWHKDKVNYNMDKFEYVDMKHRRSYEFSRGLGSNEEIIVEDQGSKEEYKEDELTKLPVFNDIAAGEPILMNPCVEGEFNIPKYWVRGMKNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIVAVNLEGSATLKRLLIKKSGAVLIPENKKYKPIEIREEGASIIGIAVGIIKGK
>NC_010516.1|WP_003401786.1|1027988_1028534_+|GNAT-family-N-acetyltransferase
MGKIKQAKYNINGKTIIIRHAEVEDAEQLINVIKKVNQETDFLLKDPEEVCLTIKEEKEFIQSQIDSQVDLLIVPEVDGRIVGVCSLNGNTNKKIRHSAQFGLAVEKEYCGMGIGKNLMKSGIEWAKENGIFRITLEVDINNYRAISLYLKLGFEIEGTLRNDKMLSDGSYTSGYAMALLL
>NC_010516.1|WP_003401785.1|1025939_1027646_+|SEL1-like-repeat-protein
MDRFSFLKIEWPEIYQIICNVEEKSKEDSNITLIKLAQIAELITKYILKENHIEKNIELLDEINLLKDCHNLNADIVDSFYKIIIVSNKAIYEEYSDSIIAKSFLDKMFEILVWFAIEYGKTDYRKVDLSNMTSEDKDIFNKYIKSKSYNDTERNIENETMIQPFTIDNEEFFKEENNDDINRYEQDIFETKEEFHKRIKDHEIFTLGRIFIKKSNINETDEVVAFPFSIYKSIQIKIPIIDILYIERAEFENLSIEEEKYILFSKLDIINDKICIDINNIYIEVNNNKCKVHAIVLDISYYESYEKYRNIIYSKRSIPIGMIKLNKNKYDINKDEMPVTINYYDWIQKYILNTKAYIEIHRYEAKTLCKENLYYILNGKLDIFDKKLLIREYYIQSKSLDKNFKIKLCDSDPMNKLRCLADREEIFAMNIIGEMYYKEQNYKEAMYWYKEASEKGNSTSMNNIGLMYYEGKGVEQDYKKAMYWYKKSSQEGNFTAMSNIGFMYYNGQGVTQDYKKAMYWYKKSYKEGNSGVMRDIGSMYYEGKGVIKDYKKAMQCYKKASQMDNFIK
>NC_010516.1|WP_003401784.1|1025170_1025719_+|biotin-transporter-BioY
MDKKLKVRDMIYSALFATIIGVSSYIIIPLPISPVPITAQSLAVMLAGCVLTPIQVVLSMITFLLMGIIGIPVFSGGTAGFGIIVGKTGGYLIGFLVGAIIISLLVRKNKSLVNMMIACFIGGIVVVHILGSAWLGQVTSIGIKKAFLLGSAPFIPGDLIKAVIAVLIGGKLSKEMKRSGIQ
>NC_010516.1|WP_003401783.1|1023790_1024819_+|HAMP-domain-containing-histidine-kinase
MNNKISVKMVVAFSLIVFFIVTSAVVISALVVVFLSRFNVFTQPNPLILLGWLGIISIMVSTAIAQIIGKKVLSPISDLNKATKEVAKGNFNTRLSENSWTDEIREMAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERKEYIHKILISTKRLSSLSGNILQITELENQKILPLKQKYYLDEQIRQTILLFEYQWTKKNITLDINLDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEILITIKDNGIGMSEEVKNRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICEGTIKISSHEEVGTEFTVKLPK
>NC_010516.1|WP_003401782.1|1023119_1023791_+|response-regulator-transcription-factor
MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYREYIDLIISDIMMPNMDGYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQIINERKIVISETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGIESETDPRTVDVHINRLRDRFKDNKDFNIITIRGLGYKVVKQ
>NC_010516.1|WP_015957862.1|1020599_1022960_-|ABC-transporter-ATP-binding-protein/permease
MLQIKDLKKVYTTGEFKQTALDGVSIDFRQSEFVAILGPSGSGKTTLLNMLGGLDQYDSGNMIINGLSTKKFGESDWDTYRNNSVGFIFQSYNLIPHLSIVDNVEMGMTLSGVPKSEKRQKATYVLEKVGLGNHIHKKPNQLSGGQMQRVAIARALANDPEIILADEPTGALDTQTSEQIMDLIKEIAKDKLVIMVTHNPELAEEYADRIVSFSDGKIISDTNPFVSENNSNDYKPKKTSMNFLTALKLSGNNIVTKKWRTALTAFASSIGIIGVALVLSLSNGFNKQINEFEKDSLSNYPISIEQNSMSLGMSPSSKSKDKEKTEFPNKSMIYPYDSSKNAAVHANAISTEYVDYIKKIDSSLINGISYTRNVNMNILKKQDGKVVSMNTSAAAFSTYPSKGDSFETDYLKSYYDVLKGSYPKNEKELVLVVDKYNQVDTNILEALGFSADSKNINFDSMIGTEYKLIYNDDYYTQSGKYFTVNGDTTNLENLYNNKNAVTLKISGIIRIKEDANVSNLSTGIVYSDQLAQDFIENAKNSKIVLVQKEAKYNVMNGNLLTEKTSTTTAAVHGAPSMTTNITSNVETKDDVLASLGATSSPTSISIYPVNFEAKDNITNYLDDWNKKLKEEDQIVYTDMASMITSLTGNIMDGITIVLVAFAGISLVVSMIMIGIIIYISVLERTKEIGVLRALGARKKDITRVFNAETFIIGFCSGGLGIAITYLLTIPVNSILYKFTDLNNVAQLNPLHAIALVITSIVLTMIGGAIPSKMAAKKDPVIALRSE
>NC_010516.1|WP_003401409.1|1018628_1020236_+|hypothetical-protein
MKKKIYSSFIVLSLIISMALIYFLMPVFSVKFYSFYIVFIIIALLLSVNVSLNKGKESSKIYGIPVILIGLFIVMFIISLPIFRASSYKKLLPTPKYEEFSKNITPIDIKEIPTVNQKYAELLADKKLGEETSLGSKVELGTLTLQNVNGKLYYVAPLVHSGFMKWLLNDSTPGYITVSATNDKDVKLVTKLNGKDIKIRYQPKGFLNDDLKRHIYLKGTMNKGITDLTFELDDKGNPYYTATIYENKVGMSGQKAVGTAIVNPETGEVKKYTVENTPKWVDRIQPQSFVENNLKKWGKYIKGFFNFSGQDKLKTTEGTGVIYNNGKCYYYTGLTSVGKDESSIGFALVDTRTQQTRIFKIAGATETASMKSAEGKVQNLGYTSTFPILINVDNIPTYFTTLNDKNDLTKMFAMISVTDYNIIGTGENITECKSNYIKNLASKGNLINVGSTGKEENITDTIERINSYVVGNSTIYTFILKDHKDKIFNAGISISNELPITKEGDKVNIRYVDTKQDTINITSFDNIEFKQQSIK
>NC_010516.1|WP_011987828.1|1017320_1018091_+|hypothetical-protein
MRLNNYMKNYADLLLKSNRSLYSSGYNNLNNTRNSNIYGETSGFIKNDIDFDRAKEFLSNRELLSRLKSINGKEIKPVKAVDNVLNFEKGVYNKMKTKSGITAIFTAGDGGNVYMPYDDIKDNFSLCPSDSGEVARAGRLFTYLASDKTGYCAQSSFSKEEIKETLESVGIKPGWFEVKSGNYSNKFYMSDDGIISGEYDIEATRNGINDRDWFGDGYTKDSKFILDGKEYKLDDEGHLHIPKGEVCIMERLTRIK
>NC_010516.1|WP_003401791.1|1032012_1032777_-|MerR-family-transcriptional-regulator
MHYKIKEVADMAGISVRMLHHYDKIGLLKPESVNAAGYRLYSDENLNRLQQILFFKELNFPLQEIKAILDSPNFDKKEALKVHRQLLLEKKIRLEKIIQSVDKTISSIEGGIKMNKKEVLGAFDMTEIEEHQKKYSEEVKNKYENTSAYKESNEKTSKYTKEDWNNIMKDWDIIYKKLANLMDKNPDDEEVQEYIHQFREHISKNFYDCTPEIFRGLGELYVNDERFTNNIDKYTVGLSKFLREAINVYCDNIK
>NC_010516.1|WP_015958067.1|1033479_1034961_+|cobyric-acid-synthase
MAKIMIQGTASSVGKSLIVAALCRIFKQDGYSVCPFKSQNMSLNSYITLDGKEMGRAQVLQAYATGLEPEVYMNPILLKPTSDRKCQIIVNGKVYGNSTAMGYHNLKLKFKDMLKEHFNKLEEEFDIVVMEGAGSPAEINLRDRDIVNMGMAELVDAPVLLVGDIDKGGVFASLAGTMLLLKDGEKERVKGTIINKFRGDVEILKPGLDMLEDIVHIPCLGVVPYTRLQLEDEDGAVEFNKKAYAPIDIAVIKMPHISNFTDLDALKSEEDVSIRFITSKEEFKEPDLLIIPGSKNTIEDLLYLRQCGLEESIKEYSKDGKIIGICGGYQVLGSKIKDPHNVETDLGEIDGLNLLDMKTIFEKEKITTRVSAKLLNEEIENTVYGYEIHMGISEYSENVKPLFKIYNKNGEKVGYFDGAINEKGNVMGTYIHGVFDGVVFREKIINELRVKKGLKKKKSQIYEHMREKELDKLADIVRQSLDMEKIYSIIGMK
>NC_010516.1|WP_003401799.1|1034962_1035934_+|cobalamin-biosynthesis-protein
MYLNITTNFIDIIIAVFIDWIIGDPYWFPHPVIYIGRLISFLEKKFRTKVKNEENLKIYGGIIVLIVCLASFLIPFMLLQAFKFNFYIYHGLNILIIWTTLAAKCLHEEAIKIYHALYKENIDDARLKLSYIVGRETKDLIENEIIRADIETVAENASDGVIAPLFYAIIGGVPLAMMYKGINTMDSMLGYLNDEYRYIGFFPAKVDDIFNFVPARLTGILMCISAPIVGGNPFKSFKIMIRDRKNHKSPNCAYPEGATAAALKIQLGGTNVYFGQVVEKPTIGDKIKELAPIHIKESIKLMYASEGLMLVMVGVLLKLLFEI
>NC_010516.1|WP_015957928.1|1036318_1037407_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MHGGDIYTEGILKGKELIDFSSNINPLGLPDSFKDNLEEALSWVQVYPDIQYRNLKRNLIDYLSFSLGYFYKEKVENPNIKEENLVLGNGAIEIIDLAISNLKSISILVPSFVEYELCAKKWNVQIDYCNLNEDMTYNYENIKKSLEKTEGIILGNPNNPNGSVIDKEEFIYILDYCEKNNKIVILDEAFIEFTGKNSFSFLNLCERYKCIFIIRALTKFFSMPGIRFGYGISFNNEFLNKIREKQNPWNINCFAEIAVKYVLKDEEFIEKSINYIEKERTFMYENLKRCHLFHDVYSTYSNFILCKLKRITGEELKEKLLDKGFVLRVCKDFKALNNDYVRLAIKTRELNENLIHVLKEIN
>NC_010516.1|WP_015958091.1|1037591_1038311_+|energy-coupling-factor-ABC-transporter-permease
MKKRYLFLLTTALVLALSQSAYAMHIAEGFLPPKWAALYFVLSAPFIVIGVKHIRQKTKKNKDLKMLLAVVAAYAFILSAMKIPSVTGSCSHPTGTGLAAIIFGPFVASVVGVIVLLFQAILLAHGGITTLGANTFSMGIVGPIVSYLIYKGLKNKNQKLAVFLAASLGDLATYTVTSLQLALSFPAKTGGVMAAFAKFATIFSLTQIPLAIIEGLITIMIFEFMMKYSKEELKTLSEV
>NC_010516.1|WP_003399487.1|1038314_1038614_+|energy-coupling-factor-ABC-transporter-substrate-binding-protein
MKKQNIIITIVSVVVILASLFIGGARGGEFAGADNQAEGIIEEMNKDYEPWFESLWKPPSGEIESLLFASQAALGAGVIGYYIGKKKNAKNNNASIKNQ
>NC_010516.1|WP_041173284.1|1038591_1039275_+|cobalt-ABC-transporter-permease
MLLSKTSKLSNIHPLEKAILSIIPIVILGFTQNYIIVFCNILFFLFMNIISKNNKKIFTKITLEVTAFAAISSITFVFDYGIVYTLTLIFKSVSAGLCLSFFSLTTPIDDMLYCLGKKEYLKDMCDIAKGMERFLVVINDEYNILYSSIKSRGGFDTFKLKIRNTGKMAALLFINTLSRWKIIKEGLDSRGYVGYVPYLDRDFDFSYIRFLSILSYIILMLLLVIFF
>NC_010516.1|WP_079991833.1|1039704_1040367_+|NAD(P)-dependent-oxidoreductase
MEWINLQEKYNFIALKSKRIRILIVGGGRAAFIKGKAFLDRGCSLYILAPKFSKDILNLKTYDNVEFIKNNYDEKHILDKHLVVIATENEEVNNEIRNNCDALSKLYIDCSDKDKSLCFNSFQRESKTMVLALNNKIGCPKATSFIGEKIKRDLEKYDNYIEYVTYIRSITKNNTMKDEIIDFICSNDFHFFFEKGYGNLILSMFYGGMDFEFCNSYKKK
>NC_010516.1|WP_003404066.1|1040335_1041208_+|hydroxymethylbilane-synthase
MNFVIATRRSKLAQVQTEIIIDLLNKKHDIECEKLLIETVGDKILEVSLDKIGGKGLFVKDIEVAMLEQRADAAVHSMKDVPYEMPKGFEIIAIPEREDVRDAFISLDNIKFKDLRKGAKIGTSSRRRAAQLKLLRPDLDIVPIRGNVQTRIEKIKKENLDGIILAVAGLKRVNLDHLITDYFDTKEMVPAIGQGALGIEVMEEHPKKELFKDLDHYNSKICVLAERAFMRELDGDCHSTIGAYASIKDNIMHIIGIFERKNKIIKKEITGTKDQYEKLGIALAEHILKD
>NC_010516.1|WP_015957698.1|1041343_1042804_+|uroporphyrinogen-III-C-methyltransferase
MSKVYLIGAGPGDEELITLKAIGALKKCTAVMYDRLANGELLKYLAPNCEIYYCGKEPGCHYKSQDEINKMLVKLAKQGHIVGRIKGGDPYVFGRGGEEALDILEENIEFEVIPGVTSPVSVLNYAGIPITHRGISRGFHIFTAMTKDKLDIDWKSVVNIGGTLVFLMGLGRLELITKGLIENGMDKESKVAVVMKGTTSKQKKVIGNLENIVEKVKEAKLESPVIIVVGEVVSFSDKLNWYEKKPLFGRNICITRTKEQAKELKVQLLDLGAEVTEINSIEIKNAEENLKPYLNRLKEYDYIALTSVNAVKIFFDYLIKENIDIRNINAKFAAIGPATSEAIKVRGIMPSIKSKHFVAESLFEEMKKHVQSGDKVLVPRSKDARSFLVDALKKEGCIVDEVHIYETLCGQSSHTERFEDADTVLFTSPSTVKNMISMVGIDSIKEKSIIAIGPITAAELYKNNIECSICDEYSINGIIDKLLDLN

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Crispr_ID: NC_010516_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010516_3

1031477-1031901

Orphan

III-B

Consensus_repeat	Method
GCTGAACATTAACATGAGATGTATTTAAAT	CRISPRCasFinder
TGAACATTAACATNAGATGTATTTAAAT	CRT
TGAACATTAACATGAGATGTATTTAAAT	PILER-CR

6 spacers

The CRISPR arrays of NC_010516_3

>merge|NC_010516|3|1031477-1031901|CRISPRCasFinder,CRT,PILER-CR
ACTGAATATTAATATAATATGTATTTAAATTTTGTTTTCTTTATATTCGGATATTAAATATTCTATTGAACACTAACATGAGATGTATTTAAATGACTTAACTAAAGCTATGTGCTTTTGTTGGGAGAGACGTTGAACATTAACATAAGATGTATTTAAATGAATTATCCATTTATAGGTAATTAATTTAATTAAATACGCTGAACATTAACATGAGATGTATTTAAATGTATGTTTACATTTGTATAGTTGCTTTTCATCAAAGCTGAACATTAACATGAGATGTATTTAAATTTTATTTTTGTTGCTTCTTTTATAGTTTTATTTAATGCTGAACATTAACATGAGATGTATTTAAATGTATCTTCTGGGAATAAATTAGGTATTTACAACCAATTGAACATTAACATAAGATGTATTTAAAT

>NC_010516|3|3|1031477-1031901|CRISPRCasFinder
ACTGAATATTAATATAATATGTATTTAAAT	TTTGTTTTCTTTATATTCGGATATTAAATATTCT
ATTGAACACTAACATGAGATGTATTTAAAT	GACTTAACTAAAGCTATGTGCTTTTGTTGGGAGAGAC
GTTGAACATTAACATAAGATGTATTTAAAT	GAATTATCCATTTATAGGTAATTAATTTAATTAAATAC
GCTGAACATTAACATGAGATGTATTTAAAT	GTATGTTTACATTTGTATAGTTGCTTTTCATCAAA
GCTGAACATTAACATGAGATGTATTTAAAT	TTTATTTTTGTTGCTTCTTTTATAGTTTTATTTAAT
GCTGAACATTAACATGAGATGTATTTAAAT	GTATCTTCTGGGAATAAATTAGGTATTTACAACCA
ATTGAACATTAACATAAGATGTATTTAAAT

>NC_010516|3|1|1031479-1031901|CRT
TGAATATTAATATAATATGTATTTAAAT	TTTGTTTTCTTTATATTCGGATATTAAATATTCTAT
TGAACACTAACATGAGATGTATTTAAAT	GACTTAACTAAAGCTATGTGCTTTTGTTGGGAGAGACGT
TGAACATTAACATAAGATGTATTTAAAT	GAATTATCCATTTATAGGTAATTAATTTAATTAAATACGC
TGAACATTAACATGAGATGTATTTAAAT	GTATGTTTACATTTGTATAGTTGCTTTTCATCAAAGC
TGAACATTAACATGAGATGTATTTAAAT	TTTATTTTTGTTGCTTCTTTTATAGTTTTATTTAATGC
TGAACATTAACATGAGATGTATTTAAAT	GTATCTTCTGGGAATAAATTAGGTATTTACAACCAAT
TGAACATTAACATAAGATGTATTTAAAT

>NC_010516|3|1|1031543-1031901|PILER-CR
TGAACACTAACATGAGATGTATTTAAAT	GACTTAACTAAAGCTATGTGCTTTTGTTGGGAGAGACGT
TGAACATTAACATAAGATGTATTTAAAT	GAATTATCCATTTATAGGTAATTAATTTAATTAAATACGC
TGAACATTAACATGAGATGTATTTAAAT	GTATGTTTACATTTGTATAGTTGCTTTTCATCAAAGC
TGAACATTAACATGAGATGTATTTAAAT	TTTATTTTTGTTGCTTCTTTTATAGTTTTATTTAATGC
TGAACATTAACATGAGATGTATTTAAAT	GTATCTTCTGGGAATAAATTAGGTATTTACAACCAAT
TGAACATTAACATAAGATGTATTTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010516.1\|WP_003404066.1\|1040335_1041208_+\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NC_010516.1\|WP_003401787.1\|1028612_1030208_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|234688
NC_010516.1\|WP_003401409.1\|1018628_1020236_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372624
NC_010516.1\|WP_003401799.1\|1034962_1035934_+\|cobalamin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|234919
NC_010516.1\|WP_003401783.1\|1023790_1024819_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_010516.1\|WP_003401786.1\|1027988_1028534_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_010516.1\|WP_003401782.1\|1023119_1023791_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_010516.1\|WP_015957862.1\|1020599_1022960_-\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|213222
NC_010516.1\|WP_003401785.1\|1025939_1027646_+\|SEL1-like-repeat-protein	unknown	unknown	gnl\|CDD\|276807
NC_010516.1\|WP_079991833.1\|1039704_1040367_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235504
NC_010516.1\|WP_011987828.1\|1017320_1018091_+\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_041173284.1\|1038591_1039275_+\|cobalt-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274139
NC_010516.1\|WP_003399487.1\|1038314_1038614_+\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|179494
NC_010516.1\|WP_015957698.1\|1041343_1042804_+\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|273643
NC_010516.1\|WP_003401784.1\|1025170_1025719_+\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NC_010516.1\|WP_003401791.1\|1032012_1032777_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NC_010516.1\|WP_015958091.1\|1037591_1038311_+\|energy-coupling-factor-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|181384
NC_010516.1\|WP_015958067.1\|1033479_1034961_+\|cobyric-acid-synthase	unknown	unknown	gnl\|CDD\|234838
NC_010516.1\|WP_015957928.1\|1036318_1037407_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|180542
NC_010516.1\|WP_003401789.1\|1030486_1031044_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl\|CDD\|235612

Protein	Function_ID	Function_description	E-value
NC_010516.1\|WP_003404066.1\|1040335_1041208_+\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	3.39557e-147
NC_010516.1\|WP_003401787.1\|1028612_1030208_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	4.87939e-34
NC_010516.1\|WP_003401409.1\|1018628_1020236_+\|hypothetical-protein	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	0.00326498
NC_010516.1\|WP_015958091.1\|1037591_1038311_+\|energy-coupling-factor-ABC-transporter-permease	gnl\|CDD\|181384	PRK08319, PRK08319, energy-coupling factor ABC transporter permease.	1.78661e-119
NC_010516.1\|WP_003401783.1\|1023790_1024819_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.59931e-60
NC_010516.1\|WP_003401786.1\|1027988_1028534_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.4603e-18
NC_010516.1\|WP_003401782.1\|1023119_1023791_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.23531e-64
NC_010516.1\|WP_015957862.1\|1020599_1022960_-\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.96201e-111
NC_010516.1\|WP_003401785.1\|1025939_1027646_+\|SEL1-like-repeat-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.61879e-42
NC_010516.1\|WP_079991833.1\|1039704_1040367_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235504	PRK05562, PRK05562, NAD(P)-dependent oxidoreductase.	7.03089e-104
NC_010516.1\|WP_003401799.1\|1034962_1035934_+\|cobalamin-biosynthesis-protein	gnl\|CDD\|234919	PRK01209, cobD, cobalamin biosynthesis protein.	1.78901e-154
NC_010516.1\|WP_041173284.1\|1038591_1039275_+\|cobalt-ABC-transporter-permease	gnl\|CDD\|274139	TIGR02454, Uncharacterized_protein_MJ1089, cobalt ECF transporter T component CbiQ. This model represents the CbiQ component of the cobalt-specific ECF-type. CbiQ is now recognized as the T component of energy-coupling factor (ECF)-type transporters. The S component confers specificity (CbiM-N for cobalt systems), which CbiO is the ABC-family ATPase. In general, proteins found by this model reside next to the other putative subunits of the complex, identified as CbiN, CbiO, or CbiM. Note that the designation of cobalt transporter has been spread excessively among ECF system transporters with many other specificities. [Transport and binding proteins, Cations and iron carrying compounds].	7.05853e-28
NC_010516.1\|WP_003399487.1\|1038314_1038614_+\|energy-coupling-factor-ABC-transporter-substrate-binding-protein	gnl\|CDD\|179494	PRK02898, PRK02898, energy-coupling factor ABC transporter substrate-binding protein.	6.91474e-40
NC_010516.1\|WP_015957698.1\|1041343_1042804_+\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|273643	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	3.50555e-119
NC_010516.1\|WP_003401784.1\|1025170_1025719_+\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	9.85562e-39
NC_010516.1\|WP_003401791.1\|1032012_1032777_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	8.43623e-51
NC_010516.1\|WP_015958067.1\|1033479_1034961_+\|cobyric-acid-synthase	gnl\|CDD\|234838	PRK00784, PRK00784, cobyric acid synthase.	0
NC_010516.1\|WP_015957928.1\|1036318_1037407_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|180542	PRK06358, PRK06358, threonine-phosphate decarboxylase; Provisional.	2.29892e-91
NC_010516.1\|WP_003401789.1\|1030486_1031044_+\|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl\|CDD\|235612	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated.	2.20709e-84

>NC_010516.1|WP_003401789.1|1030486_1031044_+|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MSDKNKVALITGGVRSGKSEFAESLLQNEKSVLYIATAKITDKEMEHRVEKHKERRNSTWKTYEGYKDLGKIIKYYDEKNILLDCVTVMTTNLMFHKKIDYENIKEEQLDEILEGIKKEFYDLIISVKEENKNIILVTNEVGYSIVPAYKLGRIFRDFQGIINKFIASLSDEVYLVTCGIPLKIK
>NC_010516.1|WP_003401787.1|1028612_1030208_+|UvrD-helicase-domain-containing-protein
MKLESGQNRIAKSKHLGYGLLRGSEGTGKTTAAIYRGIYLRNQYCMYDKDKVLILSKNEENLNYIKNIYDEAEKTGGQYITLFSYIEDKLYFSVIYKIINKYFWEYIENNNLQCKIASEEEKLAIVEECISNVKDEYKNLKYIDIKYSKFFLEEIQWTKDCMYYELEEYKKADRIGRKAKKGEGPQRIIKNSKIREAVFKIMLLYNEKLKDKNLVDYSDVVSMSLKEASKNKENKFNHIIVDEAQNFTKLELKFIEALGRKNIYSSILFIADKEESSNPKGWITKGRKLNNLQLGFEFKRFNLNKKISINLKENIDDCNLKRKVSNIDTKNEDVSNIGNANSEDKVLDKNIKNEWHKDKVNYNMDKFEYVDMKHRRSYEFSRGLGSNEEIIVEDQGSKEEYKEDELTKLPVFNDIAAGEPILMNPCVEGEFNIPKYWVRGMKNCFILKVKGDSMIGANIEDGDHVVIKRQQMAENKDIVAVNLEGSATLKRLLIKKSGAVLIPENKKYKPIEIREEGASIIGIAVGIIKGK
>NC_010516.1|WP_003401786.1|1027988_1028534_+|GNAT-family-N-acetyltransferase
MGKIKQAKYNINGKTIIIRHAEVEDAEQLINVIKKVNQETDFLLKDPEEVCLTIKEEKEFIQSQIDSQVDLLIVPEVDGRIVGVCSLNGNTNKKIRHSAQFGLAVEKEYCGMGIGKNLMKSGIEWAKENGIFRITLEVDINNYRAISLYLKLGFEIEGTLRNDKMLSDGSYTSGYAMALLL
>NC_010516.1|WP_003401785.1|1025939_1027646_+|SEL1-like-repeat-protein
MDRFSFLKIEWPEIYQIICNVEEKSKEDSNITLIKLAQIAELITKYILKENHIEKNIELLDEINLLKDCHNLNADIVDSFYKIIIVSNKAIYEEYSDSIIAKSFLDKMFEILVWFAIEYGKTDYRKVDLSNMTSEDKDIFNKYIKSKSYNDTERNIENETMIQPFTIDNEEFFKEENNDDINRYEQDIFETKEEFHKRIKDHEIFTLGRIFIKKSNINETDEVVAFPFSIYKSIQIKIPIIDILYIERAEFENLSIEEEKYILFSKLDIINDKICIDINNIYIEVNNNKCKVHAIVLDISYYESYEKYRNIIYSKRSIPIGMIKLNKNKYDINKDEMPVTINYYDWIQKYILNTKAYIEIHRYEAKTLCKENLYYILNGKLDIFDKKLLIREYYIQSKSLDKNFKIKLCDSDPMNKLRCLADREEIFAMNIIGEMYYKEQNYKEAMYWYKEASEKGNSTSMNNIGLMYYEGKGVEQDYKKAMYWYKKSSQEGNFTAMSNIGFMYYNGQGVTQDYKKAMYWYKKSYKEGNSGVMRDIGSMYYEGKGVIKDYKKAMQCYKKASQMDNFIK
>NC_010516.1|WP_003401784.1|1025170_1025719_+|biotin-transporter-BioY
MDKKLKVRDMIYSALFATIIGVSSYIIIPLPISPVPITAQSLAVMLAGCVLTPIQVVLSMITFLLMGIIGIPVFSGGTAGFGIIVGKTGGYLIGFLVGAIIISLLVRKNKSLVNMMIACFIGGIVVVHILGSAWLGQVTSIGIKKAFLLGSAPFIPGDLIKAVIAVLIGGKLSKEMKRSGIQ
>NC_010516.1|WP_003401783.1|1023790_1024819_+|HAMP-domain-containing-histidine-kinase
MNNKISVKMVVAFSLIVFFIVTSAVVISALVVVFLSRFNVFTQPNPLILLGWLGIISIMVSTAIAQIIGKKVLSPISDLNKATKEVAKGNFNTRLSENSWTDEIREMAHSFNIMTHELGNIETLRDDFISNVSHEFKTPISAIEGYATLLQDDELSDEERKEYIHKILISTKRLSSLSGNILQITELENQKILPLKQKYYLDEQIRQTILLFEYQWTKKNITLDINLDNITYIGSKELLAQVWQNILGNAIKFSHQNGTIQVTLTQTNEEILITIKDNGIGMSEEVKNRVFEKFYQGDSSHYSDGNGLGLALVKRIIDICEGTIKISSHEEVGTEFTVKLPK
>NC_010516.1|WP_003401782.1|1023119_1023791_+|response-regulator-transcription-factor
MFKVLVVEDDPALRKLFCTVLNKNGYKSIEAKDGDSALDILYREYIDLIISDIMMPNMDGYTLTKLIRESNNNVPILMITAKETFSDKQEGFRVGTDDYMVKPIDVNEMILRVGALLRRSQIINERKIVISETTFLYDFLSVKYNNKELVLPQKEFYLIYKLVSTPNKIFTRQQLMDEIWGIESETDPRTVDVHINRLRDRFKDNKDFNIITIRGLGYKVVKQ
>NC_010516.1|WP_015957862.1|1020599_1022960_-|ABC-transporter-ATP-binding-protein/permease
MLQIKDLKKVYTTGEFKQTALDGVSIDFRQSEFVAILGPSGSGKTTLLNMLGGLDQYDSGNMIINGLSTKKFGESDWDTYRNNSVGFIFQSYNLIPHLSIVDNVEMGMTLSGVPKSEKRQKATYVLEKVGLGNHIHKKPNQLSGGQMQRVAIARALANDPEIILADEPTGALDTQTSEQIMDLIKEIAKDKLVIMVTHNPELAEEYADRIVSFSDGKIISDTNPFVSENNSNDYKPKKTSMNFLTALKLSGNNIVTKKWRTALTAFASSIGIIGVALVLSLSNGFNKQINEFEKDSLSNYPISIEQNSMSLGMSPSSKSKDKEKTEFPNKSMIYPYDSSKNAAVHANAISTEYVDYIKKIDSSLINGISYTRNVNMNILKKQDGKVVSMNTSAAAFSTYPSKGDSFETDYLKSYYDVLKGSYPKNEKELVLVVDKYNQVDTNILEALGFSADSKNINFDSMIGTEYKLIYNDDYYTQSGKYFTVNGDTTNLENLYNNKNAVTLKISGIIRIKEDANVSNLSTGIVYSDQLAQDFIENAKNSKIVLVQKEAKYNVMNGNLLTEKTSTTTAAVHGAPSMTTNITSNVETKDDVLASLGATSSPTSISIYPVNFEAKDNITNYLDDWNKKLKEEDQIVYTDMASMITSLTGNIMDGITIVLVAFAGISLVVSMIMIGIIIYISVLERTKEIGVLRALGARKKDITRVFNAETFIIGFCSGGLGIAITYLLTIPVNSILYKFTDLNNVAQLNPLHAIALVITSIVLTMIGGAIPSKMAAKKDPVIALRSE
>NC_010516.1|WP_003401409.1|1018628_1020236_+|hypothetical-protein
MKKKIYSSFIVLSLIISMALIYFLMPVFSVKFYSFYIVFIIIALLLSVNVSLNKGKESSKIYGIPVILIGLFIVMFIISLPIFRASSYKKLLPTPKYEEFSKNITPIDIKEIPTVNQKYAELLADKKLGEETSLGSKVELGTLTLQNVNGKLYYVAPLVHSGFMKWLLNDSTPGYITVSATNDKDVKLVTKLNGKDIKIRYQPKGFLNDDLKRHIYLKGTMNKGITDLTFELDDKGNPYYTATIYENKVGMSGQKAVGTAIVNPETGEVKKYTVENTPKWVDRIQPQSFVENNLKKWGKYIKGFFNFSGQDKLKTTEGTGVIYNNGKCYYYTGLTSVGKDESSIGFALVDTRTQQTRIFKIAGATETASMKSAEGKVQNLGYTSTFPILINVDNIPTYFTTLNDKNDLTKMFAMISVTDYNIIGTGENITECKSNYIKNLASKGNLINVGSTGKEENITDTIERINSYVVGNSTIYTFILKDHKDKIFNAGISISNELPITKEGDKVNIRYVDTKQDTINITSFDNIEFKQQSIK
>NC_010516.1|WP_011987828.1|1017320_1018091_+|hypothetical-protein
MRLNNYMKNYADLLLKSNRSLYSSGYNNLNNTRNSNIYGETSGFIKNDIDFDRAKEFLSNRELLSRLKSINGKEIKPVKAVDNVLNFEKGVYNKMKTKSGITAIFTAGDGGNVYMPYDDIKDNFSLCPSDSGEVARAGRLFTYLASDKTGYCAQSSFSKEEIKETLESVGIKPGWFEVKSGNYSNKFYMSDDGIISGEYDIEATRNGINDRDWFGDGYTKDSKFILDGKEYKLDDEGHLHIPKGEVCIMERLTRIK
>NC_010516.1|WP_003401791.1|1032012_1032777_-|MerR-family-transcriptional-regulator
MHYKIKEVADMAGISVRMLHHYDKIGLLKPESVNAAGYRLYSDENLNRLQQILFFKELNFPLQEIKAILDSPNFDKKEALKVHRQLLLEKKIRLEKIIQSVDKTISSIEGGIKMNKKEVLGAFDMTEIEEHQKKYSEEVKNKYENTSAYKESNEKTSKYTKEDWNNIMKDWDIIYKKLANLMDKNPDDEEVQEYIHQFREHISKNFYDCTPEIFRGLGELYVNDERFTNNIDKYTVGLSKFLREAINVYCDNIK
>NC_010516.1|WP_015958067.1|1033479_1034961_+|cobyric-acid-synthase
MAKIMIQGTASSVGKSLIVAALCRIFKQDGYSVCPFKSQNMSLNSYITLDGKEMGRAQVLQAYATGLEPEVYMNPILLKPTSDRKCQIIVNGKVYGNSTAMGYHNLKLKFKDMLKEHFNKLEEEFDIVVMEGAGSPAEINLRDRDIVNMGMAELVDAPVLLVGDIDKGGVFASLAGTMLLLKDGEKERVKGTIINKFRGDVEILKPGLDMLEDIVHIPCLGVVPYTRLQLEDEDGAVEFNKKAYAPIDIAVIKMPHISNFTDLDALKSEEDVSIRFITSKEEFKEPDLLIIPGSKNTIEDLLYLRQCGLEESIKEYSKDGKIIGICGGYQVLGSKIKDPHNVETDLGEIDGLNLLDMKTIFEKEKITTRVSAKLLNEEIENTVYGYEIHMGISEYSENVKPLFKIYNKNGEKVGYFDGAINEKGNVMGTYIHGVFDGVVFREKIINELRVKKGLKKKKSQIYEHMREKELDKLADIVRQSLDMEKIYSIIGMK
>NC_010516.1|WP_003401799.1|1034962_1035934_+|cobalamin-biosynthesis-protein
MYLNITTNFIDIIIAVFIDWIIGDPYWFPHPVIYIGRLISFLEKKFRTKVKNEENLKIYGGIIVLIVCLASFLIPFMLLQAFKFNFYIYHGLNILIIWTTLAAKCLHEEAIKIYHALYKENIDDARLKLSYIVGRETKDLIENEIIRADIETVAENASDGVIAPLFYAIIGGVPLAMMYKGINTMDSMLGYLNDEYRYIGFFPAKVDDIFNFVPARLTGILMCISAPIVGGNPFKSFKIMIRDRKNHKSPNCAYPEGATAAALKIQLGGTNVYFGQVVEKPTIGDKIKELAPIHIKESIKLMYASEGLMLVMVGVLLKLLFEI
>NC_010516.1|WP_015957928.1|1036318_1037407_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MHGGDIYTEGILKGKELIDFSSNINPLGLPDSFKDNLEEALSWVQVYPDIQYRNLKRNLIDYLSFSLGYFYKEKVENPNIKEENLVLGNGAIEIIDLAISNLKSISILVPSFVEYELCAKKWNVQIDYCNLNEDMTYNYENIKKSLEKTEGIILGNPNNPNGSVIDKEEFIYILDYCEKNNKIVILDEAFIEFTGKNSFSFLNLCERYKCIFIIRALTKFFSMPGIRFGYGISFNNEFLNKIREKQNPWNINCFAEIAVKYVLKDEEFIEKSINYIEKERTFMYENLKRCHLFHDVYSTYSNFILCKLKRITGEELKEKLLDKGFVLRVCKDFKALNNDYVRLAIKTRELNENLIHVLKEIN
>NC_010516.1|WP_015958091.1|1037591_1038311_+|energy-coupling-factor-ABC-transporter-permease
MKKRYLFLLTTALVLALSQSAYAMHIAEGFLPPKWAALYFVLSAPFIVIGVKHIRQKTKKNKDLKMLLAVVAAYAFILSAMKIPSVTGSCSHPTGTGLAAIIFGPFVASVVGVIVLLFQAILLAHGGITTLGANTFSMGIVGPIVSYLIYKGLKNKNQKLAVFLAASLGDLATYTVTSLQLALSFPAKTGGVMAAFAKFATIFSLTQIPLAIIEGLITIMIFEFMMKYSKEELKTLSEV
>NC_010516.1|WP_003399487.1|1038314_1038614_+|energy-coupling-factor-ABC-transporter-substrate-binding-protein
MKKQNIIITIVSVVVILASLFIGGARGGEFAGADNQAEGIIEEMNKDYEPWFESLWKPPSGEIESLLFASQAALGAGVIGYYIGKKKNAKNNNASIKNQ
>NC_010516.1|WP_041173284.1|1038591_1039275_+|cobalt-ABC-transporter-permease
MLLSKTSKLSNIHPLEKAILSIIPIVILGFTQNYIIVFCNILFFLFMNIISKNNKKIFTKITLEVTAFAAISSITFVFDYGIVYTLTLIFKSVSAGLCLSFFSLTTPIDDMLYCLGKKEYLKDMCDIAKGMERFLVVINDEYNILYSSIKSRGGFDTFKLKIRNTGKMAALLFINTLSRWKIIKEGLDSRGYVGYVPYLDRDFDFSYIRFLSILSYIILMLLLVIFF
>NC_010516.1|WP_079991833.1|1039704_1040367_+|NAD(P)-dependent-oxidoreductase
MEWINLQEKYNFIALKSKRIRILIVGGGRAAFIKGKAFLDRGCSLYILAPKFSKDILNLKTYDNVEFIKNNYDEKHILDKHLVVIATENEEVNNEIRNNCDALSKLYIDCSDKDKSLCFNSFQRESKTMVLALNNKIGCPKATSFIGEKIKRDLEKYDNYIEYVTYIRSITKNNTMKDEIIDFICSNDFHFFFEKGYGNLILSMFYGGMDFEFCNSYKKK
>NC_010516.1|WP_003404066.1|1040335_1041208_+|hydroxymethylbilane-synthase
MNFVIATRRSKLAQVQTEIIIDLLNKKHDIECEKLLIETVGDKILEVSLDKIGGKGLFVKDIEVAMLEQRADAAVHSMKDVPYEMPKGFEIIAIPEREDVRDAFISLDNIKFKDLRKGAKIGTSSRRRAAQLKLLRPDLDIVPIRGNVQTRIEKIKKENLDGIILAVAGLKRVNLDHLITDYFDTKEMVPAIGQGALGIEVMEEHPKKELFKDLDHYNSKICVLAERAFMRELDGDCHSTIGAYASIKDNIMHIIGIFERKNKIIKKEITGTKDQYEKLGIALAEHILKD
>NC_010516.1|WP_015957698.1|1041343_1042804_+|uroporphyrinogen-III-C-methyltransferase
MSKVYLIGAGPGDEELITLKAIGALKKCTAVMYDRLANGELLKYLAPNCEIYYCGKEPGCHYKSQDEINKMLVKLAKQGHIVGRIKGGDPYVFGRGGEEALDILEENIEFEVIPGVTSPVSVLNYAGIPITHRGISRGFHIFTAMTKDKLDIDWKSVVNIGGTLVFLMGLGRLELITKGLIENGMDKESKVAVVMKGTTSKQKKVIGNLENIVEKVKEAKLESPVIIVVGEVVSFSDKLNWYEKKPLFGRNICITRTKEQAKELKVQLLDLGAEVTEINSIEIKNAEENLKPYLNRLKEYDYIALTSVNAVKIFFDYLIKENIDIRNINAKFAAIGPATSEAIKVRGIMPSIKSKHFVAESLFEEMKKHVQSGDKVLVPRSKDARSFLVDALKKEGCIVDEVHIYETLCGQSSHTERFEDADTVLFTSPSTVKNMISMVGIDSIKEKSIIAIGPITAAELYKNNIECSICDEYSINGIIDKLLDLN

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Crispr_ID: NC_010516_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010516_4

1897877-1898094

Unclear

Consensus_repeat	Method
ATAATAATATAAAAGATATATCT	CRISPRCasFinder

3 spacers

cas3

The CRISPR arrays of NC_010516_4

>merge|NC_010516|4|1897877-1898094|CRISPRCasFinder
ATAATAATATAGAAGATATATCTCCTATTAATAATATGAAAAAACTAAAGGATATAAATTTATCTAAAAATAAAGTAAAAGACATATCTTATTTAAAGGATTTAAACTTACATCATTTAGATTTAAGAGATAATAAAATAGAAAATATAGAAGTCTTAAAAGATAAAACATCCTTGCAACATTTGTATTTAGCTAATAATAGTATTAAGGATTTTTTA

>NC_010516|4|4|1897877-1898094|CRISPRCasFinder
ATAATAATATAGAAGATATATCT	CCTATTAATAATATGAAAAAACTAAAGGATATAAATTTATCTA
AAAATAAAGTAAAAGACATATCT	TATTTAAAGGATTTAAACTTACATCATTTAGATTTAAGAG
ATAATAAAATAGAAAATATAGAA	GTCTTAAAAGATAAAACATCCTTGCAACATTTGTATTTAGCTA
ATAATAGTATTAAGGATTTTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010516.1\|WP_012340095.1\|1905197_1906556_-\|YjiH-family-protein	unknown	unknown	gnl\|CDD\|225851
NC_010516.1\|WP_003403172.1\|1886924_1887818_-\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|223905
NC_010516.1\|WP_003403083.1\|1910460_1910934_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_003403082.1\|1909159_1910140_+\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NC_010516.1\|WP_003403080.1\|1907294_1907498_+\|alpha/beta-type-small-acid-soluble-spore-protein	unknown	unknown	gnl\|CDD\|365990
NC_010516.1\|WP_003403165.1\|1884831_1885290_+\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239825
NC_010516.1\|WP_015957657.1\|1890789_1892235_+\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NC_010516.1\|WP_003403168.1\|1885860_1886715_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|225131
NC_010516.1\|WP_172645488.1\|1880026_1880230_+\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|278729
NC_010516.1\|WP_003403077.1\|1903699_1904554_+\|response-regulator	unknown	unknown	gnl\|CDD\|381097
NC_010516.1\|WP_003403076.1\|1902779_1903295_-\|ferritin	unknown	unknown	gnl\|CDD\|153113
NC_010516.1\|WP_015957999.1\|1888186_1889452_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NC_010516.1\|WP_015957746.1\|1901724_1902654_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224619
NC_010516.1\|WP_003363259.1\|1907558_1907759_+\|alpha/beta-type-small-acid-soluble-spore-protein	unknown	unknown	gnl\|CDD\|365990
NC_010516.1\|WP_003403078.1\|1904553_1905015_+\|chemotaxis-protein-CheX	unknown	unknown	gnl\|CDD\|224324
NC_010516.1\|WP_003403162.1\|1882912_1884493_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237894
NC_010516.1\|WP_003403175.1\|1889774_1890611_+\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225543
NC_010516.1\|WP_011986325.1\|1880605_1882609_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_010516.1\|WP_003403178.1\|1892388_1896846_+\|DUF5050-domain-containing-protein	unknown	unknown	gnl\|CDD\|379846
NC_010516.1\|WP_079007280.1\|1907913_1908243_-\|HesB-like-protein	unknown	unknown	gnl\|CDD\|188182

Protein	Function_ID	Function_description	E-value
NC_010516.1\|WP_012340095.1\|1905197_1906556_-\|YjiH-family-protein	gnl\|CDD\|225851	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown].	2.71709e-117
NC_010516.1\|WP_003403172.1\|1886924_1887818_-\|chemotaxis-protein-CheV	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	4.95044e-31
NC_010516.1\|WP_003403082.1\|1909159_1910140_+\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	2.43282e-139
NC_010516.1\|WP_003403080.1\|1907294_1907498_+\|alpha/beta-type-small-acid-soluble-spore-protein	gnl\|CDD\|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	1.88902e-25
NC_010516.1\|WP_003403165.1\|1884831_1885290_+\|YbaK/EbsC-family-protein	gnl\|CDD\|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	1.74732e-74
NC_010516.1\|WP_015957657.1\|1890789_1892235_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	1.93526e-150
NC_010516.1\|WP_003403168.1\|1885860_1886715_+\|4Fe-4S-binding-protein	gnl\|CDD\|225131	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion].	3.54569e-71
NC_010516.1\|WP_172645488.1\|1880026_1880230_+\|cold-shock-domain-containing-protein	gnl\|CDD\|278729	pfam00313, CSD, 'Cold-shock' DNA-binding domain.	1.31146e-20
NC_010516.1\|WP_003403077.1\|1903699_1904554_+\|response-regulator	gnl\|CDD\|381097	cd17542, REC_CheY, phosphoacceptor receiver (REC) domain of chemotaxis protein CheY. The chemotaxis response regulator CheY contains a stand-alone REC domain. Chemotaxis is a behavior known for motile bacteria that directs their movement in response to chemical gradients. CheY is involved in transmitting sensory signals from chemoreceptors to the flagellar motors. Phosphorylated CheY interacts with the flagella switch components FliM and FliY, which causes counterclockwise rotation of the flagella, resulting in smooth swimming. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.12795e-51
NC_010516.1\|WP_003403076.1\|1902779_1903295_-\|ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	1.58716e-79
NC_010516.1\|WP_015957999.1\|1888186_1889452_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	4.40137e-113
NC_010516.1\|WP_015957746.1\|1901724_1902654_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|224619	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion].	7.44512e-49
NC_010516.1\|WP_003363259.1\|1907558_1907759_+\|alpha/beta-type-small-acid-soluble-spore-protein	gnl\|CDD\|365990	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type.	6.55884e-25
NC_010516.1\|WP_003403078.1\|1904553_1905015_+\|chemotaxis-protein-CheX	gnl\|CDD\|224324	COG1406, COG1406, Predicted inhibitor of MCP methylation, homolog of CheC [Cell motility and secretion].	3.27573e-41
NC_010516.1\|WP_003403162.1\|1882912_1884493_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NC_010516.1\|WP_003403175.1\|1889774_1890611_+\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|225543	COG2996, COG2996, Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only].	1.38389e-82
NC_010516.1\|WP_011986325.1\|1880605_1882609_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	9.04356e-54
NC_010516.1\|WP_003403178.1\|1892388_1896846_+\|DUF5050-domain-containing-protein	gnl\|CDD\|379846	pfam16472, DUF5050, Domain of unknown function (DUF5050).	4.83848e-50
NC_010516.1\|WP_079007280.1\|1907913_1908243_-\|HesB-like-protein	gnl\|CDD\|188182	TIGR01911, conserved_protein, HesB-like selenoprotein. This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model. [Unknown function, General].	7.66367e-23

>NC_010516.1|WP_003403178.1|1892388_1896846_+|DUF5050-domain-containing-protein
MIRGVFAIFSKKFVAKLLLYSSIAIIPMFNHNYVQAASSKQYETKYNVSLDKVWKIRFSREVDKATLNPENIKILDNQGKEMPIDLSLDVDKHYVKIALKSGTYNGVHYSGKYEKDKKYSLIVKEGLMSEPSKNKKSKNLAYETMMDFNTIGDNEYPGLPIEDGLIVIGDKAYSVGYLSKHSSIANEITSNGNYYIAYISKEYGEKIKQVLGNNTTKGNQERANKILYYAPNGNQYEYEWNEAFGEYKIVLPKAYVDVTPGVINGVVNLAVKQVKAVPGAKYFKLAHSNTIKPIGESISYSMTYPTEKLTILSADETPLATALVDVYLPKTGYVSLSSVNETLGNTAGNISNNGSAAMDLDFYVYYVNSADKNSLYRKTLTGRMDTQISLDKAQYINVIGDWIYYSNYNDNGKIYKMKKDGTKKQILCDDTATYITVSGGVVYYANQSDKGRLYKINTDGTIDGGTSNRDPAGKVHGMPVMDDYDNYNKATDQANFINVVGDWIYYSNFSDGHKIYTVNKDGNIRRKVNDEWADGIQIVGAWAYYCSGSGAISKVRVDGTGSVIPLRGTTRKVDKGYHLNIVDGWLYYSNAEDGGKLYRIKEDGSGEKKKLADLATDYINIVGDTMYLISAGKTYTLPLNTDGTIKPTLVTKDNNGNTVVDVKDLNITVAYEDANKTIGELEAKYLPQKVAVFMKDDTVQQLPVDWDIKNRKYNGQGIYTYTGTVLGHGKQIKCTLTIPSEMLNATSIIEVYNNGPKNGSIMIKERSFGPSKQDQELKEKLKLAKRVEIGDVIKVYDNPNSEKPLGNIKVDANNANGPLVKSLDLDMYGRSFWITITRKNKAESKPTEVRQLGAAVLSGDVLDEDGEALGVDGRDFTVKGWNNPSIRDDGFISDTTEIAAQGTKSIYVIPGTGKLNMENQGVIPAGITSANYWNGGNARALLTNYDLLTNDSLKNKLKEGNYSIYVVVGYDGKAEEDVNGFGSPLVIGKTASIPKAMKATEEKIPKAPSVTKQYVKAGDTIKISGVTNEDEIYLAPEGASYIAKDITNKPYKSHDNLFFEDQSKSKEEREKEYEKSGKPSIEDGYQCKLVDGKIPQGVRSGKYKVYMVNAIGSSSPASGEIAIDNEDPVVRLDSAKQEDVIKTVTQNGTTTQETTGQKFKVNFAAFDNSFDNSIKEGITVSMARLDSPKSAIKAQEIKDKGNKTFEVIINDPHANLNDYAIYAEDKAGNIGQVNLKVQDPPANINNISLVIRTSNEGVDLVKSRLVGRTKYMTKDLTRVSDNYEVIVDGVKYVLQEEALRNLGTSPSIDAFMNALMQAKQWDIANNKPMEDKPKLSSKVSIYKVNDIIYIEGNDNTPIQIEDKTKIDADTAIVSNMIGLNSNENSTGENSKNQQYIINVTGTAQKNGKLKVCLAGKCFDIDILSTDDTTKIARKIKDAINDNTILDSYQYPGTNVESSGSEVKLTRKSPGAVVPTFTVEYFNYDN
>NC_010516.1|WP_015957657.1|1890789_1892235_+|DEAD/DEAH-box-helicase
MNKLTFENYKLSDEILKSLGKLGYKNPSEVQKQVIPLILKDKDIIVKSETGSGKTAAFSIPVCEKLELEEKDPQVLVLTPTRELALQIKEEISSIALYKRLRCTAIFGKQPMSLQKRELKQRVHLVVGTPGRTLDHIERENLDLKKIKYFVLDEADEMLNMGFIDQVEAVIKRLPKNRVTMLFSATIPEKIENLCKKYMNNPQNININPENITTDTINQCYYEVEDKDKFSLLQKIIYKEVVDNSIIFCNTREKVDEVLKNMKKKGLNAVGLHGGMEQKDRLETMKKFKEGEFQFLVCTDVAARGIHIENISHVINYEMPYEKESYVHRIGRTGRAGKEGVAITFIEPNKVIFLEDIEDYIEKEIPKRKEPSSEEVDKGKKIFEENIKNRIKTKVPKNNKKQKDITKIYISAGRKKKIRPGDIVGAITSIEGINVDNIGIIDIQDNHSYVDILEGKGNIVLKASEDMKIKGKKVRIQRAVK
>NC_010516.1|WP_003403175.1|1889774_1890611_+|S1-RNA-binding-domain-containing-protein
MIKLGEIQKLEIIREAPMGVYLNSKEDKSENDILLPGKQVPKDAKIGDEVEVFVYRDSEDRMIATINRPKITIGEIAPLKVIEKTKMGAFLDWGLERDLFLPFKEQTYGIQEGKECLVYLYIDKSDRLCASMNVYRVLSTESPYKEDDEVKGFIYDIKREIGAFVAVDDEYHGLIPKNELYEKFRYGDIVEARVTKVKEDGKLDLSIRKKAYKQMDEDADTILEKLNSNGGKLYLNDNSDPIAIKELLSMSKNAFKRAVGRLLKEGKIEFIEKGIKLK
>NC_010516.1|WP_015957999.1|1888186_1889452_+|DEAD/DEAH-box-helicase
MNNSFDTLNLNPKLVQGLKKLNINIPTEIQAKAIPLAMENKDIIGQSETGTGKTLAYLLPILEKITTEKREMQAIILAPTHELAMQINNEIKNISSNSNMDVKSMAIIGEANIKRQIEKLKEKPHIIVGSPGRILELIKKKKITAHTVKTIVIDEGDKLLDKNNLKVVKEVIKTTLRERQLMLFSATITESTLNIAKDLMKDSEVVKVKEKNTVNENIKHLYITGEHRERIEILRKLIAATNPKRAIVFINRNEEIELTTLKLQYHKIKAYGIYGAAEKEQRKKALEDFRSGKVQILVSSDLSARGLDVKDITHIFNLDLPENPKEYLHRVGRTGRASKEGIAISIITEKEKALIRKYEKEFNINIEEKKIYKGTLISSKGERSSQPKSKNRSTSVHRDNNKKKRSSSIDKSKSNHKKKKY
>NC_010516.1|WP_003403172.1|1886924_1887818_-|chemotaxis-protein-CheV
METNILLESGTGEVEIIEFLVNNKHYAINVIKVKEVIEVDNVTKVPQSDPAIEGLILCREKIFPLIDLSYILGQKNTSKKKFKTIICEFNRVSVAFKIDEIVAVHRIGWDKILKPDDIAANPLVIGNILLKDKIILLLDFEKIVTDINPSTGISEERIVNVDYKDRSHIKVFLADDSSLIRKLLKDTLTKAGFKKLTIFDDGKQVLDKLLELVEKKGEDFTEDVQILITDIEMPQMDGHTLTRKVKEHPILKRLPVIIFSSLITKDLKHKGTSVGADEQLSKPDIGELVNIIDNYIE
>NC_010516.1|WP_003403168.1|1885860_1886715_+|4Fe-4S-binding-protein
MKMISKNEIAKLKGEGFLAQKQEGYFSVRILSRAGNFTSKQIIKLAEIADNYGKGYLGVTTRLATEIPWIRYEDIEAVKKEIVSSGMAHGGTGKRVRPLVSCKGTVCVHGLYDTQKLCGELHDKYFGYELPSKFKITLVGCPNNCAKASINDIGIMGQAYVEFNEEKCKACGICTKSCRQKAVTVENNKIVYKKDLCVNCGKCATVCPFEAMTIKEQGLQVHLGGRFGREYRIGNRLKGLYKEEEIPALVQKIFDVYCEMGNPGERLAKMIERVGFDKVEEAIL
>NC_010516.1|WP_003403165.1|1884831_1885290_+|YbaK/EbsC-family-protein
MSLEGVKKQFTDENLNLKILEFDESTATVELAAKALEVEPGQIAKTLAFHVKGENMLIVAKGDARIDNKKFKAYFNGKGKMMAPEVVLEVTGHAIGGVCPFGLENPIDIYLDQSLKEFEKVYPAAGNANTAVEVTLDELEGITKGLWIDVCK
>NC_010516.1|WP_003403162.1|1882912_1884493_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MITVTNLSLRYGDKKLFEDVNLKFTPGNCYGVIGANGAGKSTFLKILSGEIEANTGDVSIQPGVRMSILKQDHFKYDEFPVLETVIMGNERLYQIMKEKDAIYAKTPFTDEDGIKASELEGEFADLNGWEAEAEASSLLQGLGIGTELHEKDMKDLSGSEKVKVLLAQALFGNPGVLILDEPTNHLDIKSVNWLEEFLINFEGTVIVVSHDRHFLNKVCTHMADVDFGKIKLYVGNYDFWYESSQLALQMAKDQNKKKEEKIKELQEFIARFSANASKSKQATSRKKLLDKIDLDNIQPSSRKYPYIAFKPEREVGNDILRVEGLTKTIDGTKVLDNISFIIGKDDKIAFVGDELSITTLFKIISGELEPDSGEYKWGITITNAYFPKDNSEYFNDVDLNLVDWLRQYSEEKSESYLRGFLGRMLFSGEEALKEVKVLSGGEKVRCMLSKMMLNNANVIILDQPTNHLDLESITALNNGLMDYKSNILFTSHDHQFIQTIANRIIEVSEAKFVDKKVTYDEYLESK
>NC_010516.1|WP_011986325.1|1880605_1882609_+|methyl-accepting-chemotaxis-protein
MKFKTMKGKMLTYFLSLFLIICIAISFMAYFMSKRMIERKASSLMSEVSRQAVQNIEARLNGTLDSIETVANMPTIKDPKLGWDKKKTILDEEIKLHGHVKMGIVGKDGQSIQTDGTTVNIKDRNYFKETMEGKRTISEPIVSKVDGKVVIIYTVPIKNGNTIMGALTAVREGNDISNISNSIKVGESGGAYLIDSTGTVIAHKNKESVIKRENSIKDAQSNEELKPIAAIEKSMIEGKEGIGQYKYKGAEKYISYSPMKSTGWSLAIYAPKNEILKEVSEITRNIIIVSILGIGIALVCIWFISTQISNNLISMRDSLNIVATGDLTTNVDSKIEKEKDEIGHMARALSKTVLSIGNMINSLKGSSFNIDDKANNLAAISEEFTATTENVSTAIQEVATGATNQAQALTEIVSMLNDFSDKINSTVNNIEEIDGMSKEIDEKANVSNKDMKELLNSIENLTKVFENFETKIWTMESNVQKINEITNLINDIAEKTNLLALNAAIEAARAGESGKGFAVVAEEIRKLAEMSRKSSEDIYTIVNGVLEDTKDMVKSSNEVNEKLNGQRSTADEAMNSFMEISKSVTNMIPKIRNINNSANIIEKNKNEILNKSETIASISQEISASAEEISASSEEMSASSEEVANTAQSLNDMTQDMLDEMNKFKTE
>NC_010516.1|WP_172645488.1|1880026_1880230_+|cold-shock-domain-containing-protein
MHTGTVKWFDNERGYGFIAGNNGKDVYVHYMQIKEKTHNKDLHEGEEVLFDIVEKEKGPIAINVQKL
>NC_010516.1|WP_015957746.1|1901724_1902654_+|glucosaminidase-domain-containing-protein
MKKATGLILKLMILVLLAFTIFIMFNSLILNKKNERFLPENAMNIYIKAADEVSENKLQVNWKYIAALDGVKNKEDFSKANIEDSKVLGKKILEISKSTKFKNTNYRLLTLDEVISKMSFTEEEKKNVHKYLDKLNNIYPITPDEYKRQFIDELIPISKELYDEYGILPSITIGQAILESDWGRSELSKKGNNLFGIKATPSWQGKVLNMETSENYNDKIKDNFRYYSSKEDSIKDYANFLVKNKRYRENKVFRATEYKTQAKAIEKAGYSTKKDKDGNLLYSSLLGKIIREYNLQLIDSKTQEEISKK
>NC_010516.1|WP_003403076.1|1902779_1903295_-|ferritin
MLSEKLLEALNNQINFEFYSSYIYLAMASYAESEDLAGFANFFRVQAQEEIFHAMKFYDYVNQMGGRVILEKIDQPKAEYKNILECFEDGFNHEKIVTSRIYNLTDIATEEKEHATISLLKWFIDEQVEEENNFNTIIRKLRRAESNPAVLYMLDDELSARVFTPPTNTGA
>NC_010516.1|WP_003403077.1|1903699_1904554_+|response-regulator
MKNTKVVIVDDSPFSISIIKDILEENGLTVVGEAGNLEEVINVVKDKRPDIVTMDMTLPGTDGIECIKAINKINKNVKVIVISSMMDEEIVKKANKNKVCGYIQKPIDPEELIATIEKVVMKEELFLQLENDYFEIFKESFKDALNKFTKTTGEFSEDTKCTISETSRGMVVVIGIIGNFSGRMILDLSQETANSMVNFMLKREPKDMNEVLNVIGEFSNIVAGNACSMLNRKSKVFGLRIAPPSIFYGKSLNISQSLIESLSVESNTEFGQIYMNVGFKRGES
>NC_010516.1|WP_003403078.1|1904553_1905015_+|chemotaxis-protein-CheX
MDAKYINPFIDSFYNVLPQIGFSNVTREDVTIKNNVESLGILINLGIVGDIKGNIVYNIQGENGKKIASKMMMGLPVEELNEMAQSALSELSNMLTANASINFSNIGVNVNISTPTLMYGQDIKIKLNTDKILNIKIVADDIPIDVNVAFEKI
>NC_010516.1|WP_012340095.1|1905197_1906556_-|YjiH-family-protein
METQKNNKYSFSELFKFICPSLIGFILFIIPISYDGEITIPIAVLSKIVLAGLGSILPQLMGIIICITFICTAITKIFKPKAILENKFFNNLFNVSPVWVLARILGFIFIVSTFFKIGPEWMWSKNTGGLLLYDLLPILFSVFIFAGMLLPLLLDFGLLEFVGALLTKVMRPIFNLPGRSSIDCMASWLGDGTIGVLLTSKQYEEGYYSEREAAVIGTTFSAVSITFSLVVISQVKLAHMFVPFYLTVCLSGIIAAILIPRIPPLSRKPDTYLNGGESKNSEALPEGYTPFTWGLEKAVAKAGSNDDPLNFIRQGLQNVLDMLLGVTPVVMAMGTSALILAEYTPLFKWLGLPFIPLLNLLKIPEAALASQTIVVGFADMFLPSVIAATIQSEMTRFIIACLSVTQLIYMSEVGGLLLGSKIPVSLKDLVIIFLERTLVTLPIITLVAHILF
>NC_010516.1|WP_003403080.1|1907294_1907498_+|alpha/beta-type-small-acid-soluble-spore-protein
MPSNKNSNNLVVPEAQQGLNQLKMEVANEVGIANYDSMDKGNLTSRQNGYVGGNMVKKMVEAYERNL
>NC_010516.1|WP_003363259.1|1907558_1907759_+|alpha/beta-type-small-acid-soluble-spore-protein
MANRNSNNLVVPEAKHGLNQLKMEVANEVGIANYDAVDKGNLTSRQNGYVGGNMVRKMVEAYERNL
>NC_010516.1|WP_079007280.1|1907913_1908243_-|HesB-like-protein
MIPVNMSDLAYKEFKNFIKENNVNSNIFRIFLAGNGUGGPVFNIVLDEQTSEDLLSPIGELSFLVHKDLFSEFGGFIIKCAEENGKGGFTIDPIIQSENISCSTCSSCS
>NC_010516.1|WP_003403082.1|1909159_1910140_+|tyrosine-recombinase-XerC
MKYNIQQLYDANFPQRLNDFLNYLRTIKGKSENTIESYKLDLIMFFRFLKLYKGMVPGEAEFNDIEIKDISDEDIKNISLTDLFAFVSFVENYRNNGSYAKARKVATLKSFFRFLQGKVKIIKENPALELESPKISKRNPVYLTLDESKRLLSSIDGKFKERDLCIVTMFLNCGLRLSELCGINISNIKNDILTVVGKGNKERTVYLNKACIKTLNDYLSVRKEMGEKIVDKDALFLSKNYTRINKRSVEMLVKKYVKKAGLDGEKYSPHKLRHTAATLMYKHGGVDIRSLQMILGHENISTTQIYTHVDSDRLREAVKSNPLSDE
>NC_010516.1|WP_003403083.1|1910460_1910934_-|hypothetical-protein
MNRETCIFNYTKKCTDCGECEICDLDQNKKCDNCGECLQREGIDTQAIKIYEIKEDKNFVDKEDLKKVLKEDEKELESLKEFEEDLENEILQETQLLKDYDENFKEQGLYAIENVEGVQIEYIEDVDGLSELMEDESRLKKVAYEEFPGLIKIRENK

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Crispr_ID: NC_010516_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010516_5

2308515-2308939

Orphan

III-B

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAATGTTCAAC	CRISPRCasFinder
ATTTAAATACATCTNATGTTAATGTTCAAC	CRT

6 spacers

The CRISPR arrays of NC_010516_5

>merge|NC_010516|5|2308515-2308939|CRISPRCasFinder,CRT
GCTTAAGCGCATCTCATGTTAATGTTCAACATTTATGCACATGGTTGAGTATCAAAGTTATAAATTATTTAAATACATCCTATGTTAATGTTCAACGAATTGTAGAAAATATACTGTTAGTTGTAGAGTTCTATTTAAATACATCTCATGTTATTGTTCAACTGCATTTCTTAATATTGTTGCTTTTGGGAAAACTGCATTTAAATACATCCTATGTTATTGTTCAACGATAGTAACAAAGCTATGGCTTTGGCATTAAAAGCAAATTTAAATACATCTCATGTTAATGTTCAACTGGACAAATGGTAACTGTTTATGAGCAAACTACAACATTTAAATACATCTTATGTTAATGTTCAACACATAGAAGATACTATAAATAATCTTTCTGTATGATTTAAATACATCTTATGTATATATTTATA

>NC_010516|5|5|2308515-2308939|CRISPRCasFinder
GCTTAAGCGCATCTCATGTTAATGTTCAAC	ATTTATGCACATGGTTGAGTATCAAAGTTATAAATT
ATTTAAATACATCCTATGTTAATGTTCAAC	GAATTGTAGAAAATATACTGTTAGTTGTAGAGTTCT
ATTTAAATACATCTCATGTTATTGTTCAAC	TGCATTTCTTAATATTGTTGCTTTTGGGAAAACTGC
ATTTAAATACATCCTATGTTATTGTTCAAC	GATAGTAACAAAGCTATGGCTTTGGCATTAAAAGCAA
ATTTAAATACATCTCATGTTAATGTTCAAC	TGGACAAATGGTAACTGTTTATGAGCAAACTACAAC
ATTTAAATACATCTTATGTTAATGTTCAAC	ACATAGAAGATACTATAAATAATCTTTCTGTATG
ATTTAAATACATCTTATGTATATATTTATA

>NC_010516|5|2|2308515-2308939|CRT
GCTTAAGCGCATCTCATGTTAATGTTCAAC	ATTTATGCACATGGTTGAGTATCAAAGTTATAAATT
ATTTAAATACATCCTATGTTAATGTTCAAC	GAATTGTAGAAAATATACTGTTAGTTGTAGAGTTCT
ATTTAAATACATCTCATGTTATTGTTCAAC	TGCATTTCTTAATATTGTTGCTTTTGGGAAAACTGC
ATTTAAATACATCCTATGTTATTGTTCAAC	GATAGTAACAAAGCTATGGCTTTGGCATTAAAAGCAA
ATTTAAATACATCTCATGTTAATGTTCAAC	TGGACAAATGGTAACTGTTTATGAGCAAACTACAAC
ATTTAAATACATCTTATGTTAATGTTCAAC	ACATAGAAGATACTATAAATAATCTTTCTGTATG
ATTTAAATACATCTTATGTATATATTTATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010516.1\|WP_003400221.1\|2310831_2311026_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_015958048.1\|2314372_2315530_-\|siphovirus-ReqiPepy6-Gp37-like-family-protein	unknown	unknown	gnl\|CDD\|379657
NC_010516.1\|WP_003400196.1\|2297606_2298323_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
NC_010516.1\|WP_003400214.1\|2305109_2306000_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_010516.1\|WP_003400216.1\|2306300_2306822_+\|DUF4825-domain-containing-protein	unknown	unknown	gnl\|CDD\|379767
NC_010516.1\|WP_003400203.1\|2300708_2301203_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_003400200.1\|2299297_2300032_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236545
NC_010516.1\|WP_003400205.1\|2301245_2301860_-\|sugar-O-acetyltransferase	unknown	unknown	gnl\|CDD\|100047
NC_010516.1\|WP_003400225.1\|2311463_2311931_+\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_003400218.1\|2309383_2309605_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_003400220.1\|2310014_2310788_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NC_010516.1\|WP_003400194.1\|2297145_2297583_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NC_010516.1\|WP_003400235.1\|2315725_2316589_-\|phage-tail-family-protein	unknown	unknown	gnl\|CDD\|368574
NC_010516.1\|WP_003400223.1\|2311042_2311297_-\|hemolysin-XhlA-family-protein	unknown	unknown	gnl\|CDD\|371241
NC_010516.1\|WP_003400231.1\|2312560_2314366_-\|PQQ-binding-like-beta-propeller-repeat-protein	unknown	unknown	gnl\|CDD\|199834
NC_010516.1\|WP_003400198.1\|2298556_2298961_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_003400229.1\|2312182_2312548_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_003400213.1\|2302852_2304259_+\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NC_010516.1\|WP_015957905.1\|2312067_2312190_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_003361919.1\|2296832_2297117_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905

Protein	Function_ID	Function_description	E-value
NC_010516.1\|WP_015958048.1\|2314372_2315530_-\|siphovirus-ReqiPepy6-Gp37-like-family-protein	gnl\|CDD\|379657	pfam14594, Sipho_Gp37, Siphovirus ReqiPepy6 Gp37-like protein. This family includes numerous phage proteins from Siphoviruses. The function of this protein is uncertain, but it is related to pfam06605. In Rhodococcus phage ReqiPepy6 this protein is called Gp37.	4.49576e-114
NC_010516.1\|WP_003400196.1\|2297606_2298323_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	2.51106e-157
NC_010516.1\|WP_003400214.1\|2305109_2306000_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.33574e-28
NC_010516.1\|WP_003400216.1\|2306300_2306822_+\|DUF4825-domain-containing-protein	gnl\|CDD\|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	5.77175e-25
NC_010516.1\|WP_003400231.1\|2312560_2314366_-\|PQQ-binding-like-beta-propeller-repeat-protein	gnl\|CDD\|199834	cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins. BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization.	2.90574e-14
NC_010516.1\|WP_003400200.1\|2299297_2300032_-\|hypothetical-protein	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.4613e-11
NC_010516.1\|WP_003400205.1\|2301245_2301860_-\|sugar-O-acetyltransferase	gnl\|CDD\|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	2.54947e-98
NC_010516.1\|WP_003400220.1\|2310014_2310788_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	9.80785e-34
NC_010516.1\|WP_003400194.1\|2297145_2297583_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	1.86288e-38
NC_010516.1\|WP_003400223.1\|2311042_2311297_-\|hemolysin-XhlA-family-protein	gnl\|CDD\|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	4.05874e-18
NC_010516.1\|WP_003400235.1\|2315725_2316589_-\|phage-tail-family-protein	gnl\|CDD\|368574	pfam05709, Sipho_tail, Phage tail protein. This family consists of several Siphovirus and other phage tail component proteins as well as some bacterial proteins of unknown function.	1.75172e-38
NC_010516.1\|WP_003400213.1\|2302852_2304259_+\|peptide-MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.90694e-120
NC_010516.1\|WP_003361919.1\|2296832_2297117_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	2.52704e-28

>NC_010516.1|WP_003400216.1|2306300_2306822_+|DUF4825-domain-containing-protein
MKNKFKVLVPLVLILSLNLIGCEVNSEKKSKENIKNSSKVETYDLIKYKGTYVGDNSSVGSIIKNLPANKYSAGFSLQTSKEPYEITINYKTNENLGEENYNKFWSDKKADKLLEKNGVVLLSLIPNAEIIKFNVDNIGEESYKYDRKNLEQKYGNLKNLFKDNDSLNKFLNN
>NC_010516.1|WP_003400214.1|2305109_2306000_-|AraC-family-transcriptional-regulator
MNYRKDIENCIDYIEEHIKEPLTLKEITQEIGYSSYHFCRVFSFLKGMPLMEYVRKRRLSLSTIDLLEGKKIIDVAFKWGFETPSSFARAFRKEFECSPSQYIKKMKSYYKSENNLILSKFMNDPYIVKKHGFKVAGYGIKTNVADSKYTKDVASFWSNYNGENLESKLYKILSPLKHGEVGLCIPCSDSGDVTYLLGVIVEDFSKVTSDMITVEVPKAQYAVFATNPVNTVDSKDQREFAKIIKESWKYIFDEWFKNNDYEYDEEKLDFEFYDERCHLRPDTVMDIYVPIKKLER
>NC_010516.1|WP_003400213.1|2302852_2304259_+|peptide-MFS-transporter
MSEKKQKHPIGLWLVNISIALQSYAAYAVVSILILFLTADVSKNGLGLSVPKAAAIIGLYQGINYMGSLVGGYITDKWLGIQKSLILGCFLTACGYLALFFAKPNIGSVWLGLIILIVAGAFFKAQISSLVGELYSKNELSKKDAAYSIFYMFINIGAFFGPIIAGLISDKWFAKVAADGEIAAYGYKYIFLMCTLIMIFIGIFIWIVCPKWLGEIGKYPVSKDKKTSTESVSTKSTEKAKAQPLTQLEKNRIKAMIVMFVFVIIFWSAWDQTATSFSLLANKLVNRTIGGFTMPVPWLTSINAIFCVVLSPIIANIWLKLGNSKKGDLSVPTKMGLGMILTGIAFLTLILGISTLGGVLDGSKQMNILFIIVAYFLLTVGELCLSPIGMAMFNKLAPAKYGSLAMGAWYLSFFFSSIISGKLAGFTDTLGYTQIFGLISGIVIVFGIILILLRNGLLKLMSLDELDK
>NC_010516.1|WP_003400205.1|2301245_2301860_-|sugar-O-acetyltransferase
MNQKDRMLAGLPYKACLDGLPEERMANKKKIYEYNHCFPDEHEKIHKLIRDILGKAGADVHIEAPFYCDYGKNIQVGDNFFANYNCTILDVGKVIIGNNVQFAPNVSLYTAGHPIHPDSRNSGYEYGIGITIGDNVWLGGNVVVNPGVHIGNNVVIGSGSVVTKDIPDNVIAIGNPCKVIREITEEDRKYYYKNYEFDVDDYKE
>NC_010516.1|WP_003400203.1|2300708_2301203_-|hypothetical-protein
MILAIECFIACVLFTLMILPSLYKEPIKHIMSYPTEIRKRVESLPQYKDVIQKKEKKHLIVKIIAVFMFAIILAVVAYFSGAKSFSKAYIHVFTLFFAVNIYDMIVLDIGLFCHSKKTRIPGTEDMDKEYRSPWHHIKGAGIGTIIGAVVALLSGGMVHFISII
>NC_010516.1|WP_003400200.1|2299297_2300032_-|hypothetical-protein
MDKFRNMKKSHIALLAVMYIVLMGSLPRFTGWATIFSAIAVGGYFLKNKKDLKELTRKKKNFIFTGIIILFLIGSSSIVAGNNKYEQKLMAEKAEQQQEIKQEEQKKIEEKKLAEEQKRIQEEEAKKKAAEEKRKQEEEAKKKAAEEQKKQEELKRKQEEENKIKAENEQAQAAFAQSTGKGNSNDQSNESENVDNNQNYTVYKTRTGSKYHSSGCRYLKKSCYETTVSQARNEGLSPCSVCNP
>NC_010516.1|WP_003400198.1|2298556_2298961_-|hypothetical-protein
MNILMLTCNIAIPVLMIFIGILYKCNLYKKIDRTLDLIVPIATFFTGFSERDREHLYKNTNNLASVNRKCSLIWSISGVCTLLLTIISLILNKSDIYNTSVILLEPELLILFIVFITVEYILKRNFNKKISEQY
>NC_010516.1|WP_003400196.1|2297606_2298323_-|transaldolase
MKYNDLKIKIFADGADLNGMLDAYNKGIVKGFTTNPSLMKKAGITDYKEFAKEVLAKIKDMPVSFEVFSDDLETMEKEAEVLGNLGENVYIKIPVTNTKGESTAPLIKKLSEKGYHLNVTAIFTIDQVKEVVEALKSGVDSIVSVFAGRIADTGEDPVKIMKEASKICKTKEGVELLWASCREFYSIVEADKCGCEIITVTNDILKKMPNMGKDLKEYSIETVRGFYKDASSLGFSIL
>NC_010516.1|WP_003400194.1|2297145_2297583_-|PTS-sugar-transporter-subunit-IIA
MLKNYINDQVVEVNVEVTNWEEAVRLGGKLLEEDGAVEHSYIDAMVDTVKNMGPYIVIAPGIAMPHARPEAGAKNIRIGLLKLKNPVNFGNEEHDPVDIVIFLCAVDNKAHIEVLGELVQLIEDDDFLKIIRNASTKKEILDYIK
>NC_010516.1|WP_003361919.1|2296832_2297117_-|PTS-sugar-transporter-subunit-IIB
MNILTVCGNGIGSSLMLAMKIEEICKENGIAANVESTDFNSAQGKKADLIVTVKELAEQFEGRDVAVVRSYINKKKITEDVLEIIKQKDEELKK
>NC_010516.1|WP_003400218.1|2309383_2309605_-|hypothetical-protein
MKKIAIGLLTALIIGVNVSTAHAAFICNVCDARVMPGQSHSCCDYLGHVEAVHSRDDGTGWVDCLRCRKILRA
>NC_010516.1|WP_003400220.1|2310014_2310788_-|N-acetylmuramoyl-L-alanine-amidase
MLFNLNPGHTLSGGDVGTRGINGLKEEVLTRQLVVEIDKELRGRGHGTNICRVDYASTLQESLNKQVALCNSVNADLNICIHFNTTVGGYGSEVYTYSGKYLVEADGVLKQLNNLGLRNRGIKDQPLALTKRIKAKTIYIEVCFIDSSGDVAILNKYGMNGIAKAIVNGVLGVSSNVAPTPSQPSKNNNSWINLDGKTGTINTPSGVNVRAGKSTSSKILGALPNGAKVRLYRKEGDWIHIYYPPHGGYIYGKYIRY
>NC_010516.1|WP_003400221.1|2310831_2311026_-|hypothetical-protein
MKFLEQFLQIKKIIALLTTIVFCILAIKGSISSTEFLSVFTLIIGFYFGQSSARQAVKESKEQE
>NC_010516.1|WP_003400223.1|2311042_2311297_-|hemolysin-XhlA-family-protein
MELKVCEEKHKRIEEKINVHDIRLNDHSKRIDKIEQSQSRTDAKIENLCDQLKQLVGIMKWYVGLTVGGLVSFFLYAIQHNIFK
>NC_010516.1|WP_003400225.1|2311463_2311931_+|hypothetical-protein
MDDKSKETIIPNCVKNNLSVKFIDIQLFNGMITYFNTQHENNDFQILLHTTYGFIKCDVCNADPSNNFITPKNPMDPNCSNVNVDFSYIVKMKNERLLKFEEENPNLNVCDNGAILNLKNVSVYKDNLNDPVLITEQMLVFADQIIGFSAIPRNN
>NC_010516.1|WP_015957905.1|2312067_2312190_-|hypothetical-protein
MLSYIKEYFLMGLYNEEDLDIFVTAKWMSVEGKEDIIKTQ
>NC_010516.1|WP_003400229.1|2312182_2312548_-|hypothetical-protein
MKLLWIEKITQNKARVYSIHNFPEIVEDKTGGIVVDDILPKPQLKESEYAVHYINPQTKEQSYEICIREKTQEEISQKQQTELNAKLLKDNAEIQIELNKQKELNSSLLLKIAQLGGNANA
>NC_010516.1|WP_003400231.1|2312560_2314366_-|PQQ-binding-like-beta-propeller-repeat-protein
MIKSFPFNAVYDANGVPDRAYLAEDFARYFAKFIGTGVYPNPATGLQVVAIDSDMRIRIKKGDGYILGRDFENTDDYIIQLDVADGILSRIDRVVLRLDYLDRKIKPILKKGNYASSPVAKSLQRDADAYEIGLADVYVKNGVISIMQSNITDLRLNKELCGIVHGVIQQADTTEIFRQFQAWFNEQKNVHEGDFEKWVNEFKIATGKKFTDWVDDLKNSLDPNSDVVAQLQMQISENKLQLDNIDLSADKVTLNSSNIKSKNVKGALEELFTSASNGKNKIVTAITGKGIVANNTDSFDTLSNKIKQIPTYAPANLLIEVKRSTPITLSNDYYTIDKIALDIYGKIYCISTKILSKIDEDGYIYWQYKYDEIIQSVAVKNGYVYIGTYNNHIIKMDSSSGNIIWNNYYSSRYGILSIVIDDDNIIYAGTDNREVIKIDSTGKIIWKYDKHKNSVNTIAIDKNGYIYSGGGSRLVKLCSNGGEEWIQDFSYSIASMAIDNNGYVYIGYVYNGIAKINPDNGEQIWHVDLGLNISANSIFVDDYVYVASSDKMIRKINLDGLEIWKYYCDYNLKSIIKRYSYIYIGHDKIVRKLTDEIYVKK
>NC_010516.1|WP_015958048.1|2314372_2315530_-|siphovirus-ReqiPepy6-Gp37-like-family-protein
MELYIFNRDLELIGILDTFTSLRWIRRYFKSGEFELHCALDSNTLELLKRDNVVYKKNDVEAGYIETRQLKIGEDGQEYLEVKGKFLTNYLDRRISWDRVNFSGKTEELMRKLVNDNAINPVNINRKIPNLILGNLKGFTEDIKYPNSFGNILEQLENISNTNNLGYRNILDIKSRLIKFDVYKGVDRTLNNGTIAPCIFSRDFENILEQEYTDSLNNYRNTTLIAGAGEGKDRKITSIEEGAGLDRYELYVDARDIQDTETVTVTVTDYDEEGNVTGEHEEDQEVEIPWERYEPQLLQRGNEKLEECSEIQTFDSKINTLGNNKYKKDYDLGDIVTVVDKNWRIRIDTRITEIEEAYEEKGFEVNVTFGNNIPTIIDKIKQTVR
>NC_010516.1|WP_003400235.1|2315725_2316589_-|phage-tail-family-protein
MDIKLTLKSNNKILEIAKDYKLFDIEGIETAEFELNIVNNANLDGSSVISKRIQKRPISISVDYKGENKEIERQKLISFFNPKNIGVLIVEYGDVKRSIEYEIENFKSKLTNVYDDLSFTVDLICPNPFWTNVELNKKQIALWKGDFHFPLVIPINKGITMGHREPSLIVNVLNNGQVKTGMIIEFFARGTLSNPSLFNVNTREFIKINKGMVAGEKFIINTNYSKKKILQDLNGVTTDILNYLDIVGGGDTFLQLDIGDNLFRYNADSNLDNLEVNIYFSPQYLGV

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Crispr_ID: NC_010516_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010516_6

2364410-2364630

TypeIII

III-B

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAATGTTCAA	CRISPRCasFinder
ATTTAAATACATCTCATGTTAATGTTCAAC	CRT

3 spacers

cas6,cas10,csm3gr7,csx19

The CRISPR arrays of NC_010516_6

>merge|NC_010516|6|2364410-2364630|CRISPRCasFinder,CRT
ATTTAAATACATCTCATGTTAATGTTCAACTAAATAGTCTGGAACAACAATATAATGAATTAAATTTAAATACATCTCATGTTAATGTTCAATTCCTTATTGATTCAAAGATGCTTCTTTGTTTCTGATTTGAATACATCTCATGTTAATGTTCAACAAACAAAAACATTTAAGGAATGTTTTCTAACAAAATTTAAATACATCTTATGTTAATGTTCAAC

>NC_010516|6|6|2364410-2364629|CRISPRCasFinder
ATTTAAATACATCTCATGTTAATGTTCAA	CTAAATAGTCTGGAACAACAATATAATGAATTAA
ATTTAAATACATCTCATGTTAATGTTCAA	TTCCTTATTGATTCAAAGATGCTTCTTTGTTTCTG
ATTTGAATACATCTCATGTTAATGTTCAA	CAAACAAAAACATTTAAGGAATGTTTTCTAACAAA
ATTTAAATACATCTTATGTTAATGTTCAA

>NC_010516|6|3|2364410-2364630|CRT
ATTTAAATACATCTCATGTTAATGTTCAAC	TAAATAGTCTGGAACAACAATATAATGAATTAA
ATTTAAATACATCTCATGTTAATGTTCAAT	TCCTTATTGATTCAAAGATGCTTCTTTGTTTCTG
ATTTGAATACATCTCATGTTAATGTTCAAC	AAACAAAAACATTTAAGGAATGTTTTCTAACAAA
ATTTAAATACATCTTATGTTAATGTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010516.1\|WP_003401763.1\|2362966_2363464_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_003401765.1\|2363483_2364173_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_010516.1\|WP_004451535.1\|2370908_2371415_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NC_010516.1\|WP_004451543.1\|2375381_2376704_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NC_010516.1\|WP_015957904.1\|2353999_2354920_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_004451529.1\|2367361_2368855_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_010516.1\|WP_003401750.1\|2355006_2357127_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NC_010516.1\|WP_003401746.1\|2353192_2353486_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_003401748.1\|2353732_2353990_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_004451539.1\|2372677_2373709_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NC_010516.1\|WP_004451541.1\|2374141_2375041_+\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_004451528.1\|2366116_2367037_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NC_010516.1\|WP_003401759.1\|2358937_2361253_-\|CRISPR-associated-RAMP-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NC_010516.1\|WP_003401761.1\|2361254_2362931_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|274208
NC_010516.1\|WP_004451533.1\|2370025_2370886_-\|NmrA-family-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|187561
NC_010516.1\|WP_003401752.1\|2357104_2357527_-\|hypothetical-protein	csx19	mkCas0132_csx19_CAS-III-D	unknown
NC_010516.1\|WP_004451526.1\|2364977_2365826_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NC_010516.1\|WP_004451531.1\|2369587_2369953_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319898
NC_010516.1\|WP_003401757.1\|2357544_2358945_-\|CRISPR-associated-RAMP-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|187857
NC_010516.1\|WP_004451537.1\|2371971_2372433_+\|staygreen-family-protein	unknown	unknown	gnl\|CDD\|378897

Protein	Function_ID	Function_description	E-value
NC_010516.1\|WP_003401765.1\|2363483_2364173_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.74354e-19
NC_010516.1\|WP_004451535.1\|2370908_2371415_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.78122e-18
NC_010516.1\|WP_004451543.1\|2375381_2376704_+\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	4.33632e-27
NC_010516.1\|WP_004451529.1\|2367361_2368855_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	7.11377e-120
NC_010516.1\|WP_003401750.1\|2355006_2357127_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	6.06406e-76
NC_010516.1\|WP_004451539.1\|2372677_2373709_-\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.76846e-92
NC_010516.1\|WP_004451528.1\|2366116_2367037_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.6249e-89
NC_010516.1\|WP_003401759.1\|2358937_2361253_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	0.000207189
NC_010516.1\|WP_003401761.1\|2361254_2362931_-\|hypothetical-protein	gnl\|CDD\|274208	TIGR02577, thermophile-specific_DNA_repair_system, CRISPR-associated protein Cas10/Cmr2, subtype III-B. This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.	3.86115e-05
NC_010516.1\|WP_004451533.1\|2370025_2370886_-\|NmrA-family-NAD(P)-binding-protein	gnl\|CDD\|187561	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs. NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	6.34699e-51
NC_010516.1\|WP_004451526.1\|2364977_2365826_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.39603e-61
NC_010516.1\|WP_004451531.1\|2369587_2369953_-\|VOC-family-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	2.21718e-16
NC_010516.1\|WP_003401757.1\|2357544_2358945_-\|CRISPR-associated-RAMP-protein	gnl\|CDD\|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	4.60851e-08
NC_010516.1\|WP_004451537.1\|2371971_2372433_+\|staygreen-family-protein	gnl\|CDD\|378897	pfam12638, Staygreen, Staygreen protein. This family of proteins have been implicated in chlorophyll degradation. Intriguingly members of this family are also found in non-photosynthetic bacteria.	2.91263e-78

>NC_010516.1|WP_003401765.1|2363483_2364173_-|CRISPR-associated-endoribonuclease-Cas6
MEFWELIATVMLKKDIYFEDCGYIIGKNINKSMLLDNDLKKIHPKKQYKNYVFNSFYPIERDKFYKKDRLYIFNIRGLSKEFIDKIETCLCNLESNDFNVISTSKKEIKRRYIKELYTQTPLIITVDDKPWLQKDGDLDLFKQRLEDNLEKKYKSFFNEDIDVKDKFINSIEFKNRKPMHYNYKNGIKLLANKVSVQIEDNEEAQKVAFLAKATGLGEKNSSIGAGFCK
>NC_010516.1|WP_003401763.1|2362966_2363464_-|hypothetical-protein
MFNWDSINKVSCLVTIGAPIVTFITGLKFYKIKRWFEYKRIKNNVLKEDSGVLIVSLGKNDIENQVRLWLKQKKGYKNIPDERIFKIQRIGNIISKDIDNIIKCLRDRKFKFQRKGIFNIHLFVAAPIVMCEIIGAEFKNDFTVFVYQYNPNSKNKYELWGKLQR
>NC_010516.1|WP_003401761.1|2361254_2362931_-|hypothetical-protein
MFVVKIDIGSKQKYIFSSNRLKQIIGASEIIRYVTEGLAKEVLQSMNKEYKNYQDSNGGNVLFEAGGNSMYIFNNEDDAKEFNKIFSRFVIEYFDGVELIIVIKEFDIKKKNIVGLYEEIEQALTKKKGERKYQFKRLSYGLTMICPNTRKPAGYEYKEKDKNDKKKIKYISKESEDKLRFYNFLYGNSSYYDEQAKIKYMIDSKEINHEQMKKELEERYSLKNGFEFTNELDDIAGSKNEGSYIGITCIDGNGMGKKIDSFNDEYKKVPEEEIFTYNQKYIKEFRNLTKNIDTNYKRVFNRLLEDLIDNYNNYYEKIGYGKQKKILPIRPIILAGDDITFISNGKIAIDITRLFTEEITEQKEQFGKNKYNLTTSAGIAIVKRNHPFSRAVKLAGALEKSSKKKLRTMKLACEKQNLEKLEDASFIDWEINRGDTLDDISIIRNKNLVARPYVILDSESKKNKNKIDIHNEDLNKIINYNFYNFHKAFKQINKSGAKSNIKSFFRSMNSSEIDSDLFYLKYNLKGKFEGDVDLKVIKKVIYDVVDAMDLYTYVKGEK
>NC_010516.1|WP_003401759.1|2358937_2361253_-|CRISPR-associated-RAMP-protein
MYKYPITIELLSETILGNGQSKNGIVNTDVLLDEEGFPYYLGKSFKGCLKKSMDTILKPFYTSNKSDFYGIVTKLFGSAKGSNTNEQNEGILKFTNFYLDKQIVDIFNEYNLKEGENKDLILSSLTDIRFGIKVGDNGVSESKSLRASRVLKKGLMFNGTILCSRKLEDTELKVLQNGVKSLKNLGINKSRGKGLVQVKIGDVIKEDSKSVDSVKGDFNYLLYEIDLKQPIKIGDSQSQYDYEQTKSYVSGSIVRGAVIGKYLKSKNINSDKIEKDVNFNNLLKRVRFYDAYPTCDGHYSFPTPNVFRTTKDIDKEEKKKSYKRNIDFSIVFDNEKIKEHEEEQPTVIKLKKGEFSYYENNILYQFNVKKDYRFHHSQELEGENIFRYESISKGQKFYGIVDVSNIENEDLKKDIYNMLKEKETLYLGGSRTSGYGETKVSKIERIKDFKKLKEKLPYFQQDTDKNKLNIYFLSDSILRNEYHQITPCFSEEYLNKNLEINISKKNINSEIYPVILTGYNSTWKSYLPHVYGIEKGSVIRVDLNNSKNQINKNSIDEFIKNQKGDRKQDGLGRLIINPKFLNVDIIKYEGTNKSCEYEHENSFLSLDKELIYYIKESRNKAIVDKCIKNNTVKNLKNKKDKNISNSQINNIIGIIDDSLLSKEKPMDEFIYRIERLKEITQNGERNERNQSILDYSILSDKKLKDLLKLSREKKKKIVEFIISNGLEPSNLKDRFIKEIQEDEFKNDEIILKAIRDILYYSLKSKGGENIE
>NC_010516.1|WP_003401757.1|2357544_2358945_-|CRISPR-associated-RAMP-protein
MSSINKIKQYILQVKNISPLRIGNGEEERNGLLISDKHAIINGTTFSGLFRDFLKKDKVKVNDEEYKLIFPESSNENNKKETSKIYFYDSISYEEIDKKDLCCRNHVRIDEEMGSSVENHLFNEYHISEGKTFQLFFEIRGLDLEEDKYNCLCKHLENFITKLSSGQIAIGSKSSFGFGKFKAIKDNNKSGIYYREYNLLTENGLNNYLDFNFDIKNLSMKGFKNLNVDINNKDSKLKIKLEAYCDEGFIIKGDSIIEKKDKKKYTVDFPYKECINGKGQFIIPSSTIKGVVRGYCNKIFRTLDETGETVINEMFGMKADESEKIEGKKGNLIFEDCKIDGEKLQRYNRIKIDRFTGGVMSGAIFKDQVATVSKDNPIEFNVALNKEDKKMLALIILAFRDIGLGYLTIGSGNNVGYGRFKGKSITISGAGYNSKLEFENFQSESNMDKFQLKGDIDKFNEIISIL
>NC_010516.1|WP_003401752.1|2357104_2357527_-|hypothetical-protein
MENLTKLEVLSKIENSGYKFAWINTFSDLKLIELRENNKFKDSYLENLIEAKIFNENKELSIIPYEDDEKFSVVEFDGTDKDYIEEKQVLYKNKSPLKGENDKLVIRNYLDYDNEGQAFVDYTKLCGIEGGKGNEKQQSK
>NC_010516.1|WP_003401750.1|2355006_2357127_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MRNNSQNKERYAKAPYNFIPFPEKIFYRHTILPKYEEKEGKGITILPKHNVFKKDLKTGYIDYSINVETPLFISDGEKESDFFKVNGEYTIPGSTVRGKVRSNAEVLSCSYPEFIENKKLWFRGSFSKDVLKDMYKEDVLPEKTGQISDNVKAGYLTRKGDKWFITPAKQVNNKFFKEIHESKLENQDINMDKDIRNNIFMYEFIDKRSNKSLWKLIGNNKNEKKEINKRIKEKGKKLSKEEKQELEKEIDNLKSDIKRLLKNNERKAFKPYYYKALYHLKDNNEIKITRVSESIKDENCGILMNSSRLNCKQNHYLIFEKDTEKLAKEISKELIAQYKTSVQYRQKKAEVENFEISNNDKFQNEKEKPILYITDKNDEEKIIAFGFTPYLKIPYKKSVLDGIKTKKYNVEETKKGKIDYAKAIFGFTNFNYKDSKQDNNLEITKSYKGRVSFTNAKPVQECYKQVEKPVYKHLMNPKISSFQLYLKQEVNNPKKLKTYSSDDFELRGKKFYWLRNKHDDGDDYEKDKRKGTPNKDQYARLYAVDKGGKFKGRIYFENLYKDELGLLLMSIKPFEDAKENLGQGKPYGYGKVNFQIEDIVEIDSDKRFTSLNPSLSEKSILEDKDKCIKDFIECMKKQNINVDFKNEVMYKCFAKSKIDEKDIRSPKFNYMGINEFRNRNILKSMESYIDDEKISKNEVAVTKEES
>NC_010516.1|WP_015957904.1|2353999_2354920_-|hypothetical-protein
MRNMCKKLILISVFFNIFCILISGINNQAVYAAPNSINETMSKEEIMNKYYELKKDNQELIEEYNKLSHEWSDEKIEIEKKKENVDSSIVKIVTFGSLFLILSSMGIFVYVKKHMQNKIKELYENKINHIVENEINKKLPKEVSKQVSKKTGEEIEYIEKTAKECKREQTLMKEKNILVISNDNEEEKLLKDSNLLNQFEKAEMVVLGNEIDNLGEYDVILFNDINGYLEDGEMNKIIDDNIDNKKNAVYFYFTRNYKRTFKSNKPNNTNFAKSNSTFVGNLIDLMKYQDDVLKNKKYNNECVGCT
>NC_010516.1|WP_003401748.1|2353732_2353990_-|hypothetical-protein
METLLKHEGEKFFQKIGQAFTYEVKGNYIVPSTTNYNIPISDILKGLKRGVVTKTTELQDLRGPSYIYAFVNDDRFEFYLEDGEK
>NC_010516.1|WP_003401746.1|2353192_2353486_-|hypothetical-protein
MNFFTLNILIGAMAFIINKINNMSQDIDTFEAFNDIQENLEEIDNEKVTNFVNGLINASMSNPSIGYFFMFLVYMTPILNLLLLIKGIVNYFNRAVG
>NC_010516.1|WP_004451526.1|2364977_2365826_-|PhzF-family-phenazine-biosynthesis-protein
MEYFHVDVFSNEILYGNGLTVVFCNEELEDNLMLKLTQEFKQFETIFVRRIDNSIFNARIFTVDEELDFAGHPILGAAATIHSNIFRNEEDIAITFQLNQKTIIVNSKKIEEYYEVQMNQGKAEFLCEVSKEKRNKYVHALNLSEENLSEEFPMEVVSTGLPYLLVPLTSGIENAKIISSKFEEMLKEVGAKFAYIFDVNYIEGRTWDNQGNVEDVATGSAAGPLGAYLYKHNIFNVGHEIIINQGRFVGRPSKIKVSMSISEKEILVSGEVAILAKGTILL
>NC_010516.1|WP_004451528.1|2366116_2367037_-|PhzF-family-phenazine-biosynthesis-protein
MRKFEYTLVDVFTNQVFGGNQLAVFKDAEKLSSEEMQSIARELNFSETTFVTDIGPNHKKLRIFTPKTELPMAGHPTIGTAFVLADEGAVETREGINKLIFEEGVGEIAVSIHVEGGRIKSIEMEQPMPVFGQVFGDIRTAAELLSLDIADIDTTSPIQTVSTGVPFLYIPLKSLDVISKIKLRLDTWEKFFSSSEDTKHIFAFTRETLHAGSTIHSRMFAPAMGIAEDPATGGASGPLGAYLVEHGLVAHGYDGKYMIINEQGIEMGRPSFINITVSKTYNNFSEIKIGGTCVKFGAGLIELPTL
>NC_010516.1|WP_004451529.1|2367361_2368855_+|PLP-dependent-aminotransferase-family-protein
MNIKIDKNSLITITQQLVHYFSDRIMSGFIKAGQKLPSIRSLAKELGISPMTIIKAYNNLEQNGLVTTIQGKGTYVNERNSTVKSNNITEKDSFQWQMSVPDYLSRSQFRYNPNLSYSNDYYNLSVASLNHKLLPTKTILKDSLGLIQNDIKLLSEYPPVQGDYEFRNIMSQYLRSKEIATSPENILVTSGSQQGISLIASTFIGPGDIVVMETPTYPGAIDLFKCRGAVILTVPVDSEGMRTDILMNLCDKHSPKLIYTIPNFHNPTGYSMSSKRKAELLDIARYNDILIVEDDPWNEISYKKEKIKSIKSMDTDGHVVYIKSLSKILGPSYRLAVIISESSILSRLIAAKANHDLGTSVLIQKTIINFIQSNKITYYIESLNKQLVKRRDKVISLLKSHAPSGMKWAIPEGGINIWVTLPKNFNVEKLLSYSITTKNISFLPGTICYPNEVEFNNLRICFTYLDEEFIEDTIIELCNLIKLLYTTKNITDYRPII
>NC_010516.1|WP_004451531.1|2369587_2369953_-|VOC-family-protein
MNFCWITLNVSNMEESLNFYHEIIGLKISERFNVGEDIEIAMLGETDGTKVELIYNKKQNVLSRSEGLSIGFEVKSLDEAMELLKNKNIPIKRGPISPLPSSRFFFIDDPNGIEIQIVQHN
>NC_010516.1|WP_004451533.1|2370025_2370886_-|NmrA-family-NAD(P)-binding-protein
MILITGANGQTGRAIIKALLSKGERIRAFVHTTEQIQEIKSLGEMEVVAGDMMNQRDVEEAFIGVSAVYHICSAVNPNEVEIEQMAINAARKAKVEHFVYHSVLHSVLQDMLHHQKKLKVEELLVNSAIPYTIIQPAVFMQNILESWNSLSEKGIFQQKFFTTQETRMCMVDLEDLAEAVSIILTSPGHTGATYELCGPEDLSLFDMIATMEQHIGLKIKVETPQDEMFAAQLKKLGVGDYQVNTLLKMFQHYNEHGFIGNPNVLTWILGRRPNDFSSFILRTLRS
>NC_010516.1|WP_004451535.1|2370908_2371415_-|MarR-family-transcriptional-regulator
MESFKFSLRDIPKREILNEYSSRFTGINVDAVESCIALLRTASDISKILDEHFSKYGISEGKFTILMLLYRQSDYQLSPISLSKKAEVTKGTMTGLIAGLENQGFIEKISNPCDKRGYLVRLSSKGLRILEEILPVHYTLIAKLMAGLEDGQLKELTTLLNLLSKNLL
>NC_010516.1|WP_004451537.1|2371971_2372433_+|staygreen-family-protein
MSKLNTDKLSVEFRNGVTSTEPILGRRYTLTHSDITAELFLTIGSAYAYDKINATRDEVLGEWIGKQKNYLFHVYLHIDGNNPIVTGVRNHIFRLELPLALKAIRYVDRKFFISHPKLDNSPIIVHLMSSYPNFNRIEKWGTFSDYSLKNYKT
>NC_010516.1|WP_004451539.1|2372677_2373709_-|alpha/beta-hydrolase
MKKVIKVVSVILVILVISGFFIIKNLTETKDGKLNMYVAANLQLYKILNLKSINSKSIEEIRGNLNKQSTKWSNKPILFSNIKNLDIKMNNEKIPVRIYTPENGSNFPIIIYSHGGFWIGGNVDTSDRVCRKLSQNTKAIVISVNYRLAPENSFPAGLNDVYNVLQWTYKNAKSINGDEKHIAVVGDSAGGNLSAAVSSMSRDKNGPPITCQVLIYPSTNIFELNSKSWSYFSNSVNVSREDMEKYISIYAPKKEDRKNPYASPLLSKDFSKLPDTLVVTAEIDPLRDEGEAYANKLKESGVKVDVARYKGITHGFITMDKITNKADEALNQISLYIQKEFQK
>NC_010516.1|WP_004451541.1|2374141_2375041_+|hypothetical-protein
MSNKRNLQSLRSFYICILIFNMVSNSIFHLNNNGFNIELFKNFTIRSVILLDLNILLFLIIVIAFEKKINIDEEVTTQLNTRIRPLYLVNIFFIAYILVCIFLLKDIDVILSSFIMEIIYIGIIILSKKIITLELTNRQLQWQKACGYIDEDCEESSFLWRFKLWWSPHVNVPFKNRWKGPSRLLYDLALVYGIIISKGNLFSLILLILLLPDAISWLEGLLGLQTSLTGICTGITEHHSKNSHVLYHKVYVTDYKNKREITFYVDGPLFIHENSHMTVVHGTFSKRVLYVEGLNLDIR
>NC_010516.1|WP_004451543.1|2375381_2376704_+|APC-family-permease
MLEKKYGLWTTVSMVIGIVIGSGVFFKADNILMASGGNVKTALLAWLVGAISMIFGALVFAECANRFERSNGIVDYAEGMLSEKFAYLIGWFNGIIYYPAIAAVLAWAAGNYTAILFNKDGNFVWIMAAIYMIGIYILNYISPILSGKFQIASTAIKLVPLMIIAIFGIFQGLHNGILIENFSKVSIISDSGSGFAAAVLGAAFAYEGWIIATTINGEIKDAKNTLPKALVFGSLVIVIIYILYFLGIVGMIPTETILKQGDNTVNVAARTVFGNFGASILTIFIIVSCLGTLNGLILGGSRSFYSLAIRGQGIKPEAFSKLNSKTNIPTNSTIANFILICIYLVVWYMNFKGLFPNKLFIDISELPIALIYGIYIIIYIAYMMKMKDLSFIKRFVIPSLALMGALIVVYGGLSKTSVIIDLGISVFVFLSGLLFYNKKK

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Crispr_ID: NC_010516_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010516_7

2903490-2903616

Orphan

Consensus_repeat	Method
ATTTATCTTACATTAACTATATCGAATTTCTTTTTTTATACTTTATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010516_7

>merge|NC_010516|7|2903490-2903616|CRISPRCasFinder
ATTTATCTTACATTAACTATATCGAATTTCTTTTTTTATACTTTATACCTTTTTTATATTTTTATAACTTATTTATTTGCATTTATCTTACATTAATTATATCGAATTTCTTTTTTTATACTTTATA

>NC_010516|7|7|2903490-2903616|CRISPRCasFinder
ATTTATCTTACATTAACTATATCGAATTTCTTTTTTTATACTTTATA	CCTTTTTTATATTTTTATAACTTATTTATTTGC
ATTTATCTTACATTAATTATATCGAATTTCTTTTTTTATACTTTATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010516.1\|WP_004451386.1\|2911452_2911857_-\|flagellar-protein-FlgN	unknown	unknown	gnl\|CDD\|377465
NC_010516.1\|WP_015958106.1\|2890140_2890806_-\|PIG-L-family-deacetylase	unknown	unknown	gnl\|CDD\|376836
NC_010516.1\|WP_003399242.1\|2900056_2902162_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NC_010516.1\|WP_015957652.1\|2909305_2911171_-\|flagellar-hook-associated-protein-FlgK	unknown	unknown	gnl\|CDD\|236084
NC_010516.1\|WP_004451384.1\|2907826_2908258_-\|flagellar-assembly-protein-FliW	unknown	unknown	gnl\|CDD\|237334
NC_010516.1\|WP_015957899.1\|2903622_2903964_-\|flagellar-protein-FliT	unknown	unknown	unknown
NC_010516.1\|WP_015957604.1\|2902493_2903324_-\|flagellin	unknown	unknown	gnl\|CDD\|183759
NC_010516.1\|WP_015957982.1\|2907608_2907827_-\|carbon-storage-regulator-CsrA	unknown	unknown	gnl\|CDD\|234973
NC_010516.1\|WP_015957558.1\|2907236_2907593_-\|flagellar-protein-FlaG	unknown	unknown	gnl\|CDD\|377090
NC_010516.1\|WP_003399239.1\|2898481_2898844_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_003399249.1\|2906879_2907179_-\|hypothetical-protein	unknown	unknown	unknown
NC_010516.1\|WP_003399238.1\|2896314_2898453_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|224137
NC_010516.1\|WP_003399247.1\|2906456_2906843_-\|flagellar-export-chaperone-FliS	unknown	unknown	gnl\|CDD\|376819
NC_010516.1\|WP_015957926.1\|2898930_2900016_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133005
NC_010516.1\|WP_041173297.1\|2903972_2906429_-\|flagellar-filament-capping-protein-FliD	unknown	unknown	gnl\|CDD\|236082
NC_010516.1\|WP_003399235.1\|2890805_2891693_-\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|187720
NC_010516.1\|WP_191590055.1\|2892389_2893472_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|133048
NC_010516.1\|WP_015957554.1\|2893490_2896322_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|379345
NC_010516.1\|WP_004451385.1\|2908325_2909288_-\|flagellar-hook-associated-protein-FlgL	unknown	unknown	gnl\|CDD\|181087
NC_010516.1\|WP_003399236.1\|2891689_2892406_-\|acylneuraminate-cytidylyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133006

Protein	Function_ID	Function_description	E-value
NC_010516.1\|WP_004451386.1\|2911452_2911857_-\|flagellar-protein-FlgN	gnl\|CDD\|377465	pfam05130, FlgN, FlgN protein. This family includes the FlgN protein and export chaperone involved in flagellar synthesis.	4.97961e-17
NC_010516.1\|WP_015958106.1\|2890140_2890806_-\|PIG-L-family-deacetylase	gnl\|CDD\|376836	pfam02585, PIG-L, GlcNAc-PI de-N-acetylase. Members of this family are related to PIG-L an N-acetylglucosaminylphosphatidylinositol de-N-acetylase (EC:3.5.1.89) that catalyzes the second step in GPI biosynthesis.	8.96168e-21
NC_010516.1\|WP_003399242.1\|2900056_2902162_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	2.84843e-39
NC_010516.1\|WP_015957652.1\|2909305_2911171_-\|flagellar-hook-associated-protein-FlgK	gnl\|CDD\|236084	PRK07739, flgK, flagellar hook-associated protein FlgK; Validated.	9.04869e-126
NC_010516.1\|WP_004451384.1\|2907826_2908258_-\|flagellar-assembly-protein-FliW	gnl\|CDD\|237334	PRK13285, PRK13285, flagellar assembly protein FliW; Provisional.	1.3262e-65
NC_010516.1\|WP_015957604.1\|2902493_2903324_-\|flagellin	gnl\|CDD\|183759	PRK12804, PRK12804, flagellin; Provisional.	7.65329e-93
NC_010516.1\|WP_015957982.1\|2907608_2907827_-\|carbon-storage-regulator-CsrA	gnl\|CDD\|234973	PRK01712, PRK01712, carbon storage regulator CsrA.	3.32215e-24
NC_010516.1\|WP_015957558.1\|2907236_2907593_-\|flagellar-protein-FlaG	gnl\|CDD\|377090	pfam03646, FlaG, FlaG protein. Although important for flagella the exact function of this protein is unknown.	6.31836e-16
NC_010516.1\|WP_003399238.1\|2896314_2898453_-\|glycosyltransferase	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	1.41498e-46
NC_010516.1\|WP_003399247.1\|2906456_2906843_-\|flagellar-export-chaperone-FliS	gnl\|CDD\|376819	pfam02561, FliS, Flagellar protein FliS. FliS is coded for by the FliD operon and is transcribed in conjunction with FliD and FliT, however this protein has no known function.	1.38254e-48
NC_010516.1\|WP_015957926.1\|2898930_2900016_-\|glycosyltransferase	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	2.1858e-43
NC_010516.1\|WP_041173297.1\|2903972_2906429_-\|flagellar-filament-capping-protein-FliD	gnl\|CDD\|236082	PRK07737, fliD, flagellar hook-associated protein 2.	1.07203e-61
NC_010516.1\|WP_003399235.1\|2890805_2891693_-\|methionyl-tRNA-formyltransferase	gnl\|CDD\|187720	cd08651, FMT_core_like_4, Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.	1.60459e-93
NC_010516.1\|WP_191590055.1\|2892389_2893472_-\|CBS-domain-containing-protein	gnl\|CDD\|133048	cd06426, NTP_transferase_like_2, NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	7.19631e-124
NC_010516.1\|WP_015957554.1\|2893490_2896322_-\|glycosyltransferase	gnl\|CDD\|379345	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family. Members of this family of prokaryotic proteins include putative glucosyltransferases, which are involved in bacterial capsule biosynthesis.	1.44897e-94
NC_010516.1\|WP_004451385.1\|2908325_2909288_-\|flagellar-hook-associated-protein-FlgL	gnl\|CDD\|181087	PRK07701, flgL, flagellar hook-associated protein FlgL; Validated.	1.28581e-78
NC_010516.1\|WP_003399236.1\|2891689_2892406_-\|acylneuraminate-cytidylyltransferase-family-protein	gnl\|CDD\|133006	cd02513, CMP-NeuAc_Synthase, CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.	2.64438e-94

>NC_010516.1|WP_015957604.1|2902493_2903324_-|flagellin
MIINHNLNAMNAHRNMGINTGNSAKAMEKLSSGLRINRAGDDAAGLSISEKMRAQIRGLNQASRNAQDGISLIQTAEGALNETHSILQRMRELTVQAANDTNVTVDRTAIQEELTSLTSEIDRIASTTQFNEKKLLNGDLATSGAKLQIGANNEADLTLDIKIGSMSSGALQITSTSVSVADNGTAKASIDSINSAIKSVSTERSKLGAFQNRLEHTIANLDNASENLQAAESRVRDVDMAKEMMNFSKNNILQQAAQAMLAQANQAPQGVLQLLR
>NC_010516.1|WP_003399242.1|2900056_2902162_-|glycosyltransferase-family-2-protein
MKLSIAMIVKNEEKNLERTLIPLKKLKEYIDVEIVIVDTGSTDNTIKIAKKYTDKVYLHIWNNDFAAMRNISIDYCTGDWILVLDADEALYDIKDLGELFNRNIIHKYNSAFIKIVNFNKNIENSINNENIAPLLRIFKRNTVKYEGIVHEQPDFKAPVLNTNIRFIHYGYDNDDYELMECKFKRNIELLFKQLRDNPEDIYVNFQIATSYAMHKDLKEALKYITKAYELCKSELTKYIYVVDKYCYILYSLKKYELLREKAIEGINNYKDFLDFYFYLGEACFNLKQYDQSIDAYCNYLNIYTKLQKNEIEFTNILSESTRGFKDNILYNLAMGYYNLKKYNCAIDAIENINDKNIIKDKIYGVFKIIDKGDLWGKLYIIDGIIDKHNFEDALVYVHEELSLNKLQNIEVEQLKQLKVIINIVSYFKINNNINEEIFNEIKEIILRNKVPYIVFVYYTLKYNINEIKNFICFGKDKIESILIHLCKNYYEFNEVLYKGLNVLKSSTFSDLLMRTTVLKSFILGGKIPKELREKIFLSYIAEKYYTIIKCYDNEIIKHNLWILSSEERFIIQLKETLSYKYNDTLKCIQCMKNLLNLDNGYIGYIKLLVGKFEEVTINKKVKAFLPELVQNIRTLINNKKYQDAYNTIEKGLDLVYFDFDLMVLKYNLLLNFNYTEEAMECLNNIILYGDIDRVNNFIYNH
>NC_010516.1|WP_015957926.1|2898930_2900016_-|glycosyltransferase
MKITLCMIVKNEEKNIKRCLESALKIVDDAIIVDTGSTDRTLDIIKTFDKKIQIINYNWEDDFSKARNLSIKNANGDWILVLDADEELICDKEKLISKLKDTNLNSFNVTWINVLDNKGELDSFAYNRVFRNKGYRYYRAIHEQLDVNEKESGILEEEIFKIIHYGYTKESMEKNNKISRNLKILLDCYNNDSEDPFVCYHLGATYASSRDYKNALNYFVRSYELGLNKGFGAYYYELIKRMSECIYLLHDYKLCIDLITELLSKEDVRNFTDLYYIVGSCFYKMKDHENAKKMFNKCIELGERQDFPTFAGRGSFLSELMLARIYVDKNDYKNAKMFYLKVLQSKERLSKDIIEEIYCYI
>NC_010516.1|WP_003399239.1|2898481_2898844_-|hypothetical-protein
MEKSLQEQQFEALQTANEYIVKLINGINMYINKIKENKYDEALDLLSYILEGIDWLNEVARLTKDIQKKNMDEELMKEQLEKISEYLNIEDYEKILNIIKDEILPLMKEWQLIIGSSIVA
>NC_010516.1|WP_003399238.1|2896314_2898453_-|glycosyltransferase
MEYINGYKIQATNNIQKLINEGKIKEAKSLIRKFEDSTKDDIDIISMKAVILIMDNKLEEAKQILKYAINLEKTNPDVLFNLAYIYEISGEYEKAYEYYSNAKNNSKDNEFISNTENIMNKLKENLNLQNNDEKIKTSIVILTYNKLEYTKLCIDSIRKYTKSGTYEIVVVDNNSTDDTREWLKEQKDIKVILNDENLGFPGGCNVGINAAEKENDILLLNNDTIVTPRWLENLKKCLYSDEHIGAVGAITNNCSNYQAIKTKYESIDEMIDFADRYNISDLSKWEQKVRLIGYCMLIKRKVIDKIGLLDERFFPGNFEDDDLGYRIQSEGYKLILCNDTFIHHFGSASFKENPEKFSKLLTENSKRFINKWGFDSEKNSFINFNIIEKINKVESNINVLHIGCGTGALLYKIKHVFKDAKLYGMDNSEITTKILKNFVNVKVSSIDDELYYPEDFFDYIIVTNSIEDSKAPRTALKNLLKFLKETGKIIITIKNSNFYAEFIKILMGSTDFKDKNLYNYNEIKEIFSSKEFLNANIQSQTVDITTENEMIMDHICKLTGENMKSQYITKEYLITFNKNSIDKKEIKYILRRIENYIDIKDNLKILNNYLNKIDYKVLNEIIMKDIIRKEEVFNNIAINFYDNHKYERALEILELSYKYNPSYKDTVYNIAYIIYQLGDKKTALNYLELFSKNSYDEDILKLKKEILGDINE
>NC_010516.1|WP_015957554.1|2893490_2896322_-|glycosyltransferase
MNDKKICFITCINDDRQYEECLLYINNLNIPKGYEIDTISVKEAKSMAAGYNAAMQDTDAKYKVYLHQDTYVINKNFIYDMLDVFNSDKKIGMIGVIGAKTIPTNGVWLESIHKYGQVYESRTGNMKLLALNEPKNDYEEVKAINGLIMVTQYDILWREDIFGGWSLYDLAQSVEFTLAGYKVVIPKQNDTWCVHECGNSKNDYDKYKNKFLEQYSKNIFPLVSVLIPTYNRPEYFKEALESVINQTYRNIEIIIGDDSTNDETENLIKENYLNNYDNIKYYHNKKNLGQFDNDLKLYDIAEGQFINFLMDDDLFRTTKIEKMMNYFIQDINDEISIITSHRAVIDSNGIVGDVFGNTNDIFKNSIIISGIELGNFILKNNFNCIGEPTTALFRKNKLNEPFGVYNNRKYGCNVDQASWFNLLSNGKAVFINEVLSYFRMHGGQQLASDKMKLLGALDYAHEVVTAKEKGFLMENEDFNAALSSSLKYCKSVSDYFNEIDEKQEFIEKIHELKEKCEILKVKLKEINYIQNIVEKGSLASSCEKKLKKLAHIKDRNIKNAIMKRKIMFSCITTYHMFVAYILSKTVYKNDYKIILVASGHNDYEKICKNMGDLNIWEEVVLINEKNGDFNFVKNQLESVNFNDVDILHYFSWGSIANYVLLEFVMPHTTVNLTDEGVMTYIIKESVQQWAADTKSSKMPLDFNKISEIWLFDKRLFISDIDIPLREIEFKKYIDTDLKYVLRDELNYIFDYEHKRDKFDIVFFDQYLTLSGQTNLSQEKYLLMNIARLARGLNLIVKKHPTDSVDKYKGIEISNILMDMVPWEVICLNYYIDNELDNRIFMTYASTAILTNIFLFDNSSKNNIFIFLYDILSNLTGENAGYENFNIFLNRIKDVYDVSFIVPESFYEVKRYFSANIMKEKKNEKLSYEEFINEQEHIIKALLK
>NC_010516.1|WP_191590055.1|2892389_2893472_-|CBS-domain-containing-protein
MNMKNLGNILVCESTTLLETLNAINLNQKGTAIVVDKENKLLGTITDGDIRRAILENISLNSSIKNIYNKNCICFNESYDLTKAMQYFTKSIKLIPIINKNQKVTSYLELTDVLLLESKNNYVIIMAGGLGTRLKELTKSTPKPMLKVGEHPMLQHIINNFKQYGYDKMLISVNYKADIIENYFQDGGAYGVKIDYIREKKRMGTCGGIKLAKEYLNAPFFVTNGDIFTNLNVEDMMNFHIKNAFDITVGVRKHSFQIPYGVINSENDVIRSIEEKPTMDYLINGGIYCVNPHVIDYIPDDEYYEITDLINRCIQEGKKVGSYEIRDYWMDIGRIEDYYKANEDVYDLIACEKLGDESDK
>NC_010516.1|WP_003399236.1|2891689_2892406_-|acylneuraminate-cytidylyltransferase-family-protein
MKVINNKSVLSIIPARGGSKEVPRKNIKNLNGKPLIAYSIEEARKSKYIDRTVVSTEDVEIAKVSQKFGAEVPCLRPLELSRDDSPTIDCVIHMLNWLREEQNYIPDYVCLLQCTSPLRTYEDIDGTIEKALTSNFDGAVSVCEAEVNPYWTNVFDEDKLKYFLEEGKQITRRQDLPRVYRINGSVYVIKTEILLDEEVLEPSNITGFIMRNKKSLDIDDNEDFMLADLLIKNKGDAK
>NC_010516.1|WP_003399235.1|2890805_2891693_-|methionyl-tRNA-formyltransferase
MRIVYIGVVEFSHICLEEIIKNKGEVVGVLTKKRSKYNSDFCDLTPISEKNNIDIKYFDNINDNENIEWIKAKKPDIIFCFGLSQLIKDEILNIAPMGVIGCHDTMLPQNRGRHPIIWALALGLKETGQTFFVMNKDADTGLILSQRSLKIEDNDNAKTLYNKINQLACEQIRDFLPKLINKTYDLIEQDKKLANSWRKRTRKDGIIDWRMSTEAILNLIKALTKPYPGAEFEYNGQFITIWEATKYECDKCYNNIEPGKVVKVIGDCPIVKCYDSLIKLVEYEPRITLKEGEYL
>NC_010516.1|WP_015958106.1|2890140_2890806_-|PIG-L-family-deacetylase
MKVLVIAVHPDDETLGCGGTILKHVDNNDEVHWLILTDVLEEYGYSKEHINREYKIVESVKDAYGFKDVMNVGFPAGNIHLISFEKIIDGISEFINKIKPEIIYMPNRSDIHTDHQIAVKAIWSCTKAFRYPFIKKILMYECVSETDAAPALPENVFIPNVFSDITEYIDKKIEILKLYDSEIGLPPFPRSIDNIMALARYRGSSVSRQFAEAFMLVRDIC
>NC_010516.1|WP_015957899.1|2903622_2903964_-|flagellar-protein-FliT
MNELRNKLIKFREITLNIIDSLEKEDYDTPEKLLGQRDNIIKEINNLNYKKEEFKKIDEELELLLIEKKLQNLMVEKKAKIKQKLKKTSENKEANKNYSTKQFSTQNILNTKI
>NC_010516.1|WP_041173297.1|2903972_2906429_-|flagellar-filament-capping-protein-FliD
MRLPGLATGMDTDAMIKTMMKPYTMRVDQMKQKSQILLWQQDAYRNVMDGVSNITKKYFDVLNGDNYMLSSKNFSSLKPSGIPDTSNIKISAGSGAISGNYSLKVTELAAKAEAMGNNAVNIKTLSEGDYGIKIDASNNKIVIEGKEITLSKSRYNNVSDIAAEINSKINEDGSGLKDTVKAVVKKDGSIKIENLFKIDDTNKELKITVDGKEYTAELAAGNFTLEELTNAINSKLEVAKDADGNVLPEDKGVKASLSADGKNIEFAGATAHPNYSVAGVNLGGTVGGSGITGTDVTIAGNSITYAKEIIAGFNDTFNVQIGTDASKTVKLAAGTINSLADLETKLNDAFDAAGLKSTLTATVKDEKIVLSSNSDKQVIITGETGKSATSLLGLPDRYEMNTSLSEKMSNIVDGEVKFTINGVEFNYDFTKDYDSTTAPNGAKNKTISQILSDISDKAKVDINYSEINKKFTIRSKAEGSSEKIVASDSTGDFLQNLFGDSSISVQGRDSEFNLTTPNGISTITKPTNNFTIDGVNYNIEGAKQGEEISFSLSGDTDNSFNKIKGFIDDYNKLVDELQNKLSEKKYRKFEPLTEEQKKDMKENDIKLWEEKAQSGILRNDSDIQNMLYSLRSAFFDSVEGAGLSLKEMGLTTSSDYTQGGKIIFDPNIDKDGNSGEERLKKLLKEDPDKVFKIFSKQSDSYPRYTPDLTSTERKQRYNEEGILQRINDIFKDYTRTTKNVNGKMGIFVEKAGIKGTASEINNTLYKELEKKEKSIKEMEDRLVERENRYYYQFAQLEKYMSQMNSQSAWLAQQLGGGQ
>NC_010516.1|WP_003399247.1|2906456_2906843_-|flagellar-export-chaperone-FliS
MYTANAYNTYKNNSVNFASKDQLLLMLMDGAVKFSKIGKQSILDKDIVKAHENLVKTQDIFYELMATLDVNQAGSWGKQLMSIYEFIVRRLGEANIKKDTEIMDEVIPLIEDIRDIWYEAEKLSKQTK
>NC_010516.1|WP_003399249.1|2906879_2907179_-|hypothetical-protein
MEFRLNKIDLEVRDRIKEQTKEGKVHSKQSITINKQDRDNNSKDRGFYEQLKKQKKNKNKNIKVKAVKYVKGKNLDIEATKEEMEGKTIIVGTIIDTKK
>NC_010516.1|WP_015957558.1|2907236_2907593_-|flagellar-protein-FlaG
MEVKAMSQGRHQAYNSEIVNSGTDLDKNIEKTKLNEKHTTLDKENTREVKDSVDKLNKLLEGQDIRLEYEIYGKFRDLTIRLIDTKTKEVIKEIPPRKIIDMVAKLCEMAGVLIDEKA
>NC_010516.1|WP_015957982.1|2907608_2907827_-|carbon-storage-regulator-CsrA
MLVITRKKGESLLIGDDIEVTVVKLDDGSVKLAIDAPKKLTILRKELYNEVQEENKKATNFNPSILKNIKSK
>NC_010516.1|WP_004451384.1|2907826_2908258_-|flagellar-assembly-protein-FliW
MNLNTKYHGCIEYEEKDVIYFEKGIPGFEELKKFIIFPVEDNDVFSVFHSIEKEDMGIIVISPFNIEKDYEIQLEEEQRKKLELQNEKDALVLNTVTLNSDIDKITVNLRAPIIINIKEKIGEQIIINSDKYKVKHPLFKEEA
>NC_010516.1|WP_004451385.1|2908325_2909288_-|flagellar-hook-associated-protein-FlgL
MRITNNMMANSFMTDMNNNLENLDRIRQQLTSGKNFSKPSHDPAGVIRSMQLYSGIDANKQYNKNISNVINWLDVTDTALDQIGKQLGKIRDKLEEAGNPGFGETERKALKDEVNGIIASMSQSLNTTFDGKYIFSGTRVTGKPTGVQKDGTTKNNSIDYVNRDGSMPLDPAGDEYKQMEGKLKAEISEGVVMEYNVTATEVLEGGGDLRKLLEDIVKHLDSDDQSEISKLYGEDLGNIDKALDNVLRIRAEVGAKQNRMEAAKEMNKETNFNLHEILSNIEDIDLVEKNMEYAILQSVYISSLQTSAKILQPTLMDYLR
>NC_010516.1|WP_015957652.1|2909305_2911171_-|flagellar-hook-associated-protein-FlgK
MSGLFGTLNIGKSGMFAQQGALNTTSHNIANANTEGYSRQRVELQTTRPYCKPSMNSAAGPGQVGTGVQIVAINRVRDSFLDYQTRVELGVQGQFASRHKFLSQIENILNEPTDVGISKLFGKFFDAWYDLSTAADTSNAKSVVMQQASALADELNHTFNELSKLKENTQMEIQQTVFEVNSMLNQINQLNQEIIQVKVAGQQPNDLMDRRDLLLDKLSAKFGLEIDRENFEGIKLSTSNHAKNYQDKTSPFGGEPPQIQDKDGNYQDANLVQRIDPEDVYRFSYIKDIKPPAGKKPGEAGEYTVTYYVGGDTKTEDNKRTLTINIGSEEDFKRLDECRVLWTDKDGNAVQIKDNSGKLESDNNAIGVLGDNGKSDFKNLKLFEPPSGELRGQMSVQQDIDKYEEQLNKLAKALAFSVNAVHTQSLDPASPKDGALDFFINGENPNNEMEITAGNIALNKAIKEDPMKIIAGVTPNSGEGDGKRALAIAQIKDVFMSIQGIDKNTDRKTFLEKFFKPNDEFEFNGTTLSTIGKDTNGMTMNTYFNDIIGGLGVDEAEAQRMVKNQATSLAGFQQARDSVSGVSMDEEFANLVQFNHCYQANAKIISTVDQLLDVVINGLKK
>NC_010516.1|WP_004451386.1|2911452_2911857_-|flagellar-protein-FlgN
MEEKIKQSLKEEIEVLKELLSLLDDQHKFISFKKTFELDKIAIDIEEKCKELAQKEMARRNLIGDSSMKEFVANAKDEELKAIYKEVTNLLEEIKLQKDSNDMLIKQAISLTTNMLNILNPDRTPKTYGPYGRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010516_3	3.4\|1031706\|35\|NC_010516\|CRISPRCasFinder	1031706-1031740	35	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	221348-221382	0	1.0
NC_010516_3	3.5\|1031771\|36\|NC_010516\|CRISPRCasFinder	1031771-1031806	36	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	109134-109169	2	0.944
NC_010516_3	3.5\|1031771\|36\|NC_010516\|CRISPRCasFinder	1031771-1031806	36	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	154571-154606	2	0.944
NC_010516_3	3.10\|1031706\|37\|NC_010516\|CRT,PILER-CR	1031706-1031742	37	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	221346-221382	2	0.946
NC_010516_3	3.6\|1031837\|35\|NC_010516\|CRISPRCasFinder	1031837-1031871	35	MF417875	Uncultured Caudovirales phage clone 10S_11, partial genome	26988-27022	3	0.914
NC_010516_3	3.11\|1031771\|38\|NC_010516\|CRT,PILER-CR	1031771-1031808	38	NZ_CP013709	Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence	109134-109171	4	0.895
NC_010516_3	3.11\|1031771\|38\|NC_010516\|CRT,PILER-CR	1031771-1031808	38	NZ_CP013844	Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence	154571-154608	4	0.895
NC_010516_3	3.12\|1031837\|37\|NC_010516\|CRT,PILER-CR	1031837-1031873	37	MF417875	Uncultured Caudovirales phage clone 10S_11, partial genome	26986-27022	5	0.865
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	78236-78268	5	0.848
NC_010516_6	6.6\|2364567\|34\|NC_010516\|CRT	2364567-2364600	34	NC_048677	Lactobacillus phage LpeD, complete genome	128927-128960	7	0.794
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_AP014830	Geminocystis sp. NIES-3709 plasmid pGM3709_09, complete sequence	1177-1209	7	0.788
NC_010516_6	6.3\|2364566\|35\|NC_010516\|CRISPRCasFinder	2364566-2364600	35	NC_048677	Lactobacillus phage LpeD, complete genome	128927-128961	8	0.771
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	542148-542180	8	0.758
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_CP013238	Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence	350196-350228	8	0.758
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	228325-228357	8	0.758
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	265940-265972	9	0.727
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	463092-463124	9	0.727
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	LR595862	Escherichia virus Lambda_2H10 genome assembly, chromosome: 1	41901-41933	9	0.727
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_CP040905	Enterococcus faecium strain N56454 plasmid unnamed, complete sequence	28865-28897	9	0.727
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NC_013392	Staphylococcus epidermidis plasmid SAP108D, complete sequence	1578-1610	9	0.727
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	1018257-1018289	9	0.727
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_CP034948	Enterococcus faecium strain NM213 plasmid unnamed5, complete sequence	107636-107668	9	0.727
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NC_029073	Geobacillus virus E3, complete genome	17231-17263	9	0.727
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NC_029073	Geobacillus virus E3, complete genome	52290-52322	9	0.727
NC_010516_4	4.2\|1897966\|40\|NC_010516\|CRISPRCasFinder	1897966-1898005	40	NC_018689	Bacillus thuringiensis MC28 plasmid pMC429, complete sequence	417214-417253	10	0.75
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_CP037749	Campylobacter helveticus strain 2013D-9613 plasmid unnamed1	48195-48227	10	0.697
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_CP020479	Campylobacter helveticus strain ATCC 51209 plasmid pHELV-1, complete sequence	18810-18842	10	0.697
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NC_008014	Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence	57699-57731	10	0.697
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NC_008014	Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence	76012-76044	10	0.697
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NC_020130	Lawsonia intracellularis N343 plasmid 3, complete sequence	57730-57762	10	0.697
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NC_020130	Lawsonia intracellularis N343 plasmid 3, complete sequence	76039-76071	10	0.697
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_MK275622	Clostridium perfringens strain JXJA17 plasmid p4, complete sequence	29835-29867	10	0.697
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	MN862347	Sedum sarmentosum microvirus strain pt150-mic-1, complete genome	1326-1358	10	0.697
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NC_029073	Geobacillus virus E3, complete genome	17711-17743	10	0.697
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	MK250029	Prevotella phage Lak-C1, complete genome	460734-460766	11	0.667
NC_010516_7	7.1\|2903537\|33\|NC_010516\|CRISPRCasFinder	2903537-2903569	33	NZ_CP014236	Moraxella osloensis strain CCUG 350 plasmid unnamed3, complete sequence	16297-16329	11	0.667

1. spacer 3.4|1031706|35|NC_010516|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

gtatgtttacatttgtatagttgcttttcatcaaa	CRISPR spacer
gtatgtttacatttgtatagttgcttttcatcaaa	Protospacer
***********************************

2. spacer 3.5|1031771|36|NC_010516|CRISPRCasFinder matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 2, identity: 0.944

tttatttttgttgcttcttttatagttttatttaat	CRISPR spacer
tttatttttcttgcttcttctatagttttatttaat	Protospacer
********* *********.****************

3. spacer 3.5|1031771|36|NC_010516|CRISPRCasFinder matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 2, identity: 0.944

tttatttttgttgcttcttttatagttttatttaat	CRISPR spacer
tttatttttcttgcttcttctatagttttatttaat	Protospacer
********* *********.****************

4. spacer 3.10|1031706|37|NC_010516|CRT,PILER-CR matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 2, identity: 0.946

gtatgtttacatttgtatagttgcttttcatcaaagc	CRISPR spacer
gtatgtttacatttgtatagttgcttttcatcaaata	Protospacer
***********************************

5. spacer 3.6|1031837|35|NC_010516|CRISPRCasFinder matches to MF417875 (Uncultured Caudovirales phage clone 10S_11, partial genome) position: , mismatch: 3, identity: 0.914

gtatcttctgggaataaattaggtatttacaacca	CRISPR spacer
gtatcctctgggaataaattaggcatttacaaccc	Protospacer
*****.*****************.**********

6. spacer 3.11|1031771|38|NC_010516|CRT,PILER-CR matches to NZ_CP013709 (Clostridium botulinum strain F634 plasmid pRSJ2_2, complete sequence) position: , mismatch: 4, identity: 0.895

tttatttttgttgcttcttttatagttttatttaatgc	CRISPR spacer
tttatttttcttgcttcttctatagttttatttaatat	Protospacer
********* *********.****************..

7. spacer 3.11|1031771|38|NC_010516|CRT,PILER-CR matches to NZ_CP013844 (Clostridium botulinum strain A634 plasmid pRSJ19_2, complete sequence) position: , mismatch: 4, identity: 0.895

tttatttttgttgcttcttttatagttttatttaatgc	CRISPR spacer
tttatttttcttgcttcttctatagttttatttaatat	Protospacer
********* *********.****************..

8. spacer 3.12|1031837|37|NC_010516|CRT,PILER-CR matches to MF417875 (Uncultured Caudovirales phage clone 10S_11, partial genome) position: , mismatch: 5, identity: 0.865

gtatcttctgggaataaattaggtatttacaaccaat	CRISPR spacer
gtatcctctgggaataaattaggcatttacaaccctc	Protospacer
*****.*****************.**********  .

9. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 5, identity: 0.848

ccttttttatatttttataacttatttatttgc-	CRISPR spacer
gcttttttatattttattaactta-ttatttaca	Protospacer
 **************  ******* ******.*

10. spacer 6.6|2364567|34|NC_010516|CRT matches to NC_048677 (Lactobacillus phage LpeD, complete genome) position: , mismatch: 7, identity: 0.794

aaacaaaaacatttaaggaatgttttctaacaaa	CRISPR spacer
aaacaaaaccatttaaggaatattttattaatag	Protospacer
******** ************.**** * *  *.

11. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_AP014830 (Geminocystis sp. NIES-3709 plasmid pGM3709_09, complete sequence) position: , mismatch: 7, identity: 0.788

ccttttttatatttttataacttatttatttgc	CRISPR spacer
tttagtatatatttgtataacttatttattagc	Protospacer
..*  * ******* *************** **

12. spacer 6.3|2364566|35|NC_010516|CRISPRCasFinder matches to NC_048677 (Lactobacillus phage LpeD, complete genome) position: , mismatch: 8, identity: 0.771

caaacaaaaacatttaaggaatgttttctaacaaa	CRISPR spacer
gaaacaaaaccatttaaggaatattttattaatag	Protospacer
 ******** ************.**** * *  *.

13. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.758

ccttttttatatttttataacttatttatttgc	CRISPR spacer
atccttttatatttttataacgtaattattttt	Protospacer
 ...***************** ** ****** .

14. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_CP013238 (Clostridium butyricum strain CDC_51208 plasmid pNPD4_2, complete sequence) position: , mismatch: 8, identity: 0.758

ccttttttatatttttataacttatttatttgc	CRISPR spacer
atatttttatctttttataaattatttataatc	Protospacer
 . ******* ********* ********   *

15. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 8, identity: 0.758

ccttttttatatttttataacttatttatttgc	CRISPR spacer
cactttgtatatttttttaacttatttaacttt	Protospacer
* .*** ********* *********** .* .

16. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 9, identity: 0.727

ccttttttatatttttataacttatttatttgc	CRISPR spacer
atatttttatctttttataaattatttataatt	Protospacer
 . ******* ********* ********   .

17. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 9, identity: 0.727

ccttttttatatttttataacttatttatttgc	CRISPR spacer
atatttttatctttttataaattatttataatt	Protospacer
 . ******* ********* ********   .

18. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to LR595862 (Escherichia virus Lambda_2H10 genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.727

ccttttttatatttttataacttatttatttgc	CRISPR spacer
tattttttatattttaataacatatttaaagca	Protospacer
. ************* ***** ******

19. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_CP040905 (Enterococcus faecium strain N56454 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

ccttttttatatttttataacttatttatttgc	CRISPR spacer
gattttttatttttttttaacttattaacgcga	Protospacer
  ******** ***** ********* *. .*

20. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NC_013392 (Staphylococcus epidermidis plasmid SAP108D, complete sequence) position: , mismatch: 9, identity: 0.727

ccttttttatatttttataacttatttatttgc	CRISPR spacer
acttttttatatttaaataacttatgaaaagcc	Protospacer
 *************  *********  *    *

21. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.727

ccttttttatatttttataacttatttatttgc	CRISPR spacer
tttctattttatttttataagttatttattatg	Protospacer
..*.* ** *********** *********

22. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_CP034948 (Enterococcus faecium strain NM213 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.727

ccttttttatatttttataacttatttatttgc	CRISPR spacer
gattttttatttttttttaacttattaacgcga	Protospacer
  ******** ***** ********* *. .*

23. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 9, identity: 0.727

ccttttttatatttttataacttatttatttgc	CRISPR spacer
aatattttttatttttataaattatttaaataa	Protospacer
  * **** *********** *******  *.

24. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 9, identity: 0.727

ccttttttatatttttataacttatttatttgc	CRISPR spacer
caacctttatatttttataatttgtttataagg	Protospacer
*  ..***************.**.*****  *

25. spacer 4.2|1897966|40|NC_010516|CRISPRCasFinder matches to NC_018689 (Bacillus thuringiensis MC28 plasmid pMC429, complete sequence) position: , mismatch: 10, identity: 0.75

tatttaaaggatttaaactta---catcatttagatttaagag	CRISPR spacer
tatttaaaggatttaaacttagttcattacataggttatc---	Protospacer
*********************   ***.*. ***.**

26. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_CP037749 (Campylobacter helveticus strain 2013D-9613 plasmid unnamed1) position: , mismatch: 10, identity: 0.697

ccttttttatatttttataacttatttatttgc	CRISPR spacer
gcaattttagattttgataacttatttaaagaa	Protospacer
 *  ***** ***** ************   .

27. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_CP020479 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-1, complete sequence) position: , mismatch: 10, identity: 0.697

ccttttttatatttttataacttatttatttgc	CRISPR spacer
gcaattttagattttgataacttatttaaagaa	Protospacer
 *  ***** ***** ************   .

28. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NC_008014 (Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.697

ccttttttatatttttataacttatttatttgc	CRISPR spacer
ttctttttatatttttatatattattttctaaa	Protospacer
...****************  ****** .* .

29. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NC_008014 (Lawsonia intracellularis PHE/MN1-00 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.697

ccttttttatatttttataacttatttatttgc	CRISPR spacer
ttatttttatacttttataacgtatttttactt	Protospacer
.. ********.********* ***** * . .

30. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NC_020130 (Lawsonia intracellularis N343 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.697

ccttttttatatttttataacttatttatttgc	CRISPR spacer
ttctttttatatttttatatattattttctaaa	Protospacer
...****************  ****** .* .

31. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NC_020130 (Lawsonia intracellularis N343 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.697

ccttttttatatttttataacttatttatttgc	CRISPR spacer
ttatttttatacttttataacgtatttttactt	Protospacer
.. ********.********* ***** * . .

32. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_MK275622 (Clostridium perfringens strain JXJA17 plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.697

ccttttttatatttttataacttatttatttgc	CRISPR spacer
tcttttttatttttttataactaataatataaa	Protospacer
.********* *********** **    * .

33. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to MN862347 (Sedum sarmentosum microvirus strain pt150-mic-1, complete genome) position: , mismatch: 10, identity: 0.697

ccttttttatatttttataacttatttatttgc	CRISPR spacer
tacgataaatgttttcataacttatttatttgt	Protospacer
. .  *  **.****.****************.

34. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NC_029073 (Geobacillus virus E3, complete genome) position: , mismatch: 10, identity: 0.697

ccttttttatatttttataacttatttatttgc	CRISPR spacer
tacctcctatatttttataatttatttaattag	Protospacer
. ..*..*************.******* **.

35. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 11, identity: 0.667

ccttttttatatttttataacttatttatttgc	CRISPR spacer
atagtttaatatttttataaattatttaaaaaa	Protospacer
 .  *** ************ *******   .

36. spacer 7.1|2903537|33|NC_010516|CRISPRCasFinder matches to NZ_CP014236 (Moraxella osloensis strain CCUG 350 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.667

ccttttttatatttttataacttatttatttgc	CRISPR spacer
ttgcaaaaatatttttataacttacatatttgg	Protospacer
.. .    ****************. ******

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1723542 : 1731742

uncultured_phage(33.33%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004451701.1\|1723542_1724487_-	YafY family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	1.9e-14	31.6
WP_004451703.1\|1725111_1726107_+	2-hydroxyacyl-CoA dehydratase	NA	NA	NA	NA
WP_003358645.1\|1726223_1726985_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA
WP_004451706.1\|1727002_1727434_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	3.0e-12	32.4
WP_004451707.1\|1727435_1728101_+	putative 7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	1.0e-38	44.1
WP_004451708.1\|1728104_1728695_+	GTP cyclohydrolase I FolE	S4U0J3	uncultured_phage	7.0e-44	52.8
WP_004451709.1\|1728878_1729538_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.0e-59	51.2
WP_015957528.1\|1729831_1730650_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_015957755.1\|1730797_1731742_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-15	34.0

DBSCAN-SWA_2

2310014 : 2349516

uncultured_Caudovirales_phage(39.39%)

tail,portal,capsid,integrase

attL 2307018:2307045|attR 2349584:2349611

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2307018:2307045	attL	NA	NA	NA	NA
WP_003400220.1\|2310014_2310788_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4J8A3	uncultured_Caudovirales_phage	1.4e-87	65.0
WP_003400221.1\|2310831_2311026_-	hypothetical protein	NA	NA	NA	NA
WP_003400223.1\|2311042_2311297_-	hemolysin XhlA family protein	A0A0A7RTX0	Clostridium_phage	4.1e-25	68.4
WP_003400225.1\|2311463_2311931_+	hypothetical protein	NA	NA	NA	NA
WP_015957905.1\|2312067_2312190_-	hypothetical protein	A0A0A7S0E7	Clostridium_phage	1.7e-05	52.5
WP_003400229.1\|2312182_2312548_-	hypothetical protein	NA	NA	NA	NA
WP_003400231.1\|2312560_2314366_-	PQQ-binding-like beta-propeller repeat protein	E2ELJ8	Clostridium_phage	1.6e-54	59.4
WP_015958048.1\|2314372_2315530_-	siphovirus ReqiPepy6 Gp37-like family protein	A0A0C5AEV9	Paenibacillus_phage	7.0e-64	35.4
WP_003400235.1\|2315725_2316589_-\|tail	phage tail family protein	E2ELJ6	Clostridium_phage	5.4e-45	39.7
WP_015957621.1\|2316578_2319194_-\|tail	phage tail tape measure protein	A0A0A7RU22	Clostridium_phage	1.6e-84	62.9
WP_003400239.1\|2319244_2319406_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003400241.1\|2319438_2319933_-	hypothetical protein	A0A0K2CP90	Brevibacillus_phage	1.2e-12	38.0
WP_003400243.1\|2319979_2320573_-	bacteriophage Gp15 family protein	A0A1J1J8Y5	Escherichia_phage	6.1e-64	60.9
WP_003400245.1\|2320572_2320917_-	hypothetical protein	A0A1J1JCF3	Escherichia_phage	8.0e-16	45.9
WP_003400246.1\|2320980_2321187_+	hypothetical protein	NA	NA	NA	NA
WP_003400248.1\|2321203_2321428_-	hypothetical protein	NA	NA	NA	NA
WP_003400260.1\|2321431_2321926_-	hypothetical protein	NA	NA	NA	NA
WP_003400262.1\|2321926_2322361_-	hypothetical protein	A0A0A8WJ92	Clostridium_phage	2.0e-40	55.2
WP_003400263.1\|2322357_2322702_-	hypothetical protein	F6K8R4	Clostridium_phage	2.1e-16	43.4
WP_003400265.1\|2322701_2323112_-	hypothetical protein	NA	NA	NA	NA
WP_003400267.1\|2323113_2323380_-	hypothetical protein	NA	NA	NA	NA
WP_003400269.1\|2323369_2323555_-	Rho termination factor N-terminal domain-containing protein	NA	NA	NA	NA
WP_003400272.1\|2323604_2324552_-	hypothetical protein	D2J006	Enterococcus_phage	5.3e-102	59.5
WP_003400276.1\|2324575_2325214_-	DUF4355 domain-containing protein	A0A2H4J4P4	uncultured_Caudovirales_phage	2.5e-18	31.4
WP_003400279.1\|2325482_2326076_-	hypothetical protein	NA	NA	NA	NA
WP_003400280.1\|2326284_2327007_-\|capsid	minor capsid protein	NA	NA	NA	NA
WP_003400282.1\|2327006_2328284_-\|portal	phage portal protein	A0A1V0DZW8	Clostridioides_phage	1.9e-115	51.9
WP_003400283.1\|2328287_2330021_-	hypothetical protein	A0A1V0DZW7	Clostridioides_phage	1.9e-243	70.3
WP_003400284.1\|2330043_2330688_-	hypothetical protein	NA	NA	NA	NA
WP_003400285.1\|2330740_2330932_-	hypothetical protein	NA	NA	NA	NA
WP_003400287.1\|2331194_2331611_-	helix-turn-helix domain-containing protein	A0A2H4J863	uncultured_Caudovirales_phage	4.2e-43	69.6
WP_003400288.1\|2331730_2332162_-	sigma-70 family RNA polymerase sigma factor	A0A2H4J015	uncultured_Caudovirales_phage	2.1e-45	67.1
WP_003400289.1\|2332516_2332696_-	hypothetical protein	NA	NA	NA	NA
WP_015957894.1\|2332725_2334591_-	primase	A0A2H4J1M0	uncultured_Caudovirales_phage	0.0e+00	88.4
WP_015958155.1\|2334617_2336303_-	DNA (cytosine-5-)-methyltransferase	A0A1X9I6Y5	Streptococcus_phage	7.8e-64	39.7
WP_003400296.1\|2336407_2338102_-	hypothetical protein	A0A2H4J041	uncultured_Caudovirales_phage	6.4e-292	84.4
WP_003400298.1\|2338323_2338782_-	DUF669 domain-containing protein	A0A2H4J1S8	uncultured_Caudovirales_phage	5.1e-58	68.0
WP_003400309.1\|2338784_2339066_-	hypothetical protein	NA	NA	NA	NA
WP_003400311.1\|2339065_2340772_-	AAA family ATPase	A0A2H4J7Q2	uncultured_Caudovirales_phage	1.1e-217	74.3
WP_003400312.1\|2340783_2340957_-	hypothetical protein	NA	NA	NA	NA
WP_003400314.1\|2340962_2341766_-	hypothetical protein	A0A2H4J786	uncultured_Caudovirales_phage	4.9e-133	83.9
WP_003400317.1\|2341758_2342088_-	hypothetical protein	NA	NA	NA	NA
WP_003400318.1\|2342092_2342389_-	VRR-NUC domain-containing protein	A0A2H4J095	uncultured_Caudovirales_phage	1.1e-37	75.3
WP_015957922.1\|2342388_2343216_-	DUF1351 domain-containing protein	A0A2H4J082	uncultured_Caudovirales_phage	1.7e-120	82.2
WP_003400320.1\|2343208_2343655_-	hypothetical protein	A0A2H4J7N9	uncultured_Caudovirales_phage	4.0e-07	32.7
WP_012340089.1\|2343658_2344756_-	DEAD/DEAH box helicase	A0A2H4J064	uncultured_Caudovirales_phage	3.7e-171	78.9
WP_003355976.1\|2344915_2345086_-	hypothetical protein	NA	NA	NA	NA
WP_003400326.1\|2345100_2345394_-	hypothetical protein	NA	NA	NA	NA
WP_003400328.1\|2345413_2346163_-	hypothetical protein	Q332L4	Clostridium_botulinum_C_phage	1.0e-15	36.6
WP_003400331.1\|2346179_2346509_-	hypothetical protein	NA	NA	NA	NA
WP_015957767.1\|2346531_2346756_-	transcriptional regulator	A0A0A7RTI3	Clostridium_phage	3.7e-22	70.4
WP_003400335.1\|2346977_2347427_+	helix-turn-helix transcriptional regulator	A0A0A7RTK4	Clostridium_phage	1.9e-33	56.5
WP_003400337.1\|2347476_2347893_+	ImmA/IrrE family metallo-endopeptidase	I3VYZ2	Thermoanaerobacterium_phage	1.8e-06	30.1
WP_003400341.1\|2348451_2349516_+\|integrase	site-specific integrase	B3GVW7	Streptococcus_phage	1.1e-31	33.1
2349584:2349611	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2681277 : 2735211

Clostridium_phage(39.29%)

portal,terminase,tail,capsid,protease,tRNA,head,integrase

attL 2699405:2699424|attR 2713343:2713362

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_191590059.1\|2681277_2682348_-	siphovirus ReqiPepy6 Gp37-like family protein	E2ELJ7	Clostridium_phage	4.9e-120	58.5
WP_015957549.1\|2682348_2683215_-\|tail	phage tail family protein	E2ELJ6	Clostridium_phage	5.7e-111	70.2
WP_015957775.1\|2683231_2688592_-\|tail	phage tail tape measure protein	Q0SPL2	Clostridium_phage	6.1e-62	36.6
WP_015957938.1\|2688853_2689180_-	hypothetical protein	A0A0K2CZI8	Paenibacillus_phage	1.2e-05	34.8
WP_003399875.1\|2689215_2689797_-\|tail	tail protein	E2ELJ1	Clostridium_phage	3.8e-58	59.4
WP_003399877.1\|2689799_2690144_-	hypothetical protein	A0A0S2SY15	Bacillus_phage	1.4e-20	44.3
WP_003399880.1\|2690140_2690530_-	HK97 gp10 family phage protein	E2ELI9	Clostridium_phage	4.9e-30	54.2
WP_003399882.1\|2690522_2690849_-\|head	phage head closure protein	NA	NA	NA	NA
WP_015958020.1\|2690829_2691156_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J6E5	uncultured_Caudovirales_phage	1.9e-14	51.6
WP_003399886.1\|2691172_2691274_-	Rho termination factor N-terminal domain-containing protein	NA	NA	NA	NA
WP_003399888.1\|2691368_2692496_-\|capsid	phage major capsid protein	A0A1B1P7R4	Bacillus_phage	7.9e-129	65.3
WP_015957668.1\|2692488_2693247_-\|protease	Clp protease ClpP	A0A2I7SCY8	Paenibacillus_phage	1.9e-73	63.4
WP_015957484.1\|2693236_2694421_-\|portal	phage portal protein	A0A2K9VBP0	Staphylococcus_phage	2.3e-70	38.8
WP_015957709.1\|2694436_2696137_-\|terminase	terminase large subunit	A6M948	Geobacillus_virus	9.0e-185	56.0
WP_003399893.1\|2696133_2696598_-\|terminase	phage terminase small subunit P27 family	Q9ZXG2	Bacillus_phage	1.5e-49	61.3
WP_003399895.1\|2696869_2697106_-	hypothetical protein	NA	NA	NA	NA
WP_003399897.1\|2697196_2697670_-	hypothetical protein	A0A0A7RUV1	Clostridium_phage	1.8e-10	35.5
WP_003399899.1\|2697669_2698092_-	hypothetical protein	NA	NA	NA	NA
WP_003399901.1\|2698136_2698439_-	hypothetical protein	NA	NA	NA	NA
WP_003399902.1\|2698599_2699145_-\|integrase	site-specific integrase	D2XR58	Bacillus_phage	1.4e-51	52.5
WP_003399905.1\|2699141_2699357_-	hypothetical protein	NA	NA	NA	NA
2699405:2699424	attL	NA	NA	NA	NA
WP_003399907.1\|2699539_2699968_-	hypothetical protein	NA	NA	NA	NA
WP_003399909.1\|2699951_2700122_-	hypothetical protein	NA	NA	NA	NA
WP_003399911.1\|2700123_2700414_-	hypothetical protein	NA	NA	NA	NA
WP_003399915.1\|2700570_2701566_-\|integrase	tyrosine-type recombinase/integrase	B6SCW8	Bacteriophage	7.5e-06	25.0
WP_003399919.1\|2701930_2702980_-	nucleoid-associated protein	J9QE81	Clostridium_phage	5.4e-39	29.6
WP_003399921.1\|2703006_2703210_-	hypothetical protein	NA	NA	NA	NA
WP_003385222.1\|2703223_2703418_-	hypothetical protein	NA	NA	NA	NA
WP_012100915.1\|2703455_2703641_-	hypothetical protein	NA	NA	NA	NA
WP_012340082.1\|2703678_2704002_-	hypothetical protein	NA	NA	NA	NA
WP_015958011.1\|2704035_2704197_-	hypothetical protein	NA	NA	NA	NA
WP_015957902.1\|2704246_2704543_-	hypothetical protein	NA	NA	NA	NA
WP_003399929.1\|2704583_2705303_-	hypothetical protein	A0A2H4J6H9	uncultured_Caudovirales_phage	1.0e-49	43.0
WP_015957532.1\|2705367_2705556_-	hypothetical protein	NA	NA	NA	NA
WP_003399933.1\|2705581_2705881_-	hypothetical protein	NA	NA	NA	NA
WP_015957613.1\|2705893_2706202_-	hypothetical protein	NA	NA	NA	NA
WP_003399939.1\|2706224_2706938_-	ATP-binding protein	M9Q1J4	Clostridium_phage	2.9e-52	45.1
WP_015958059.1\|2706927_2707794_-	phage replisome organizer N-terminal domain-containing protein	C5J987	Streptococcus_phage	2.2e-33	51.8
WP_003399944.1\|2707831_2708104_-	hypothetical protein	NA	NA	NA	NA
WP_003399945.1\|2708120_2708303_-	hypothetical protein	NA	NA	NA	NA
WP_003399947.1\|2708304_2708565_-	hypothetical protein	NA	NA	NA	NA
WP_003399949.1\|2708576_2709377_-	ORF6C domain-containing protein	A0A0A7RUE5	Clostridium_phage	5.8e-41	51.0
WP_003399954.1\|2709730_2709934_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003399955.1\|2710139_2710505_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_015957900.1\|2710516_2712031_+	recombinase family protein	A0A0A7S0M8	Clostridium_phage	1.3e-227	76.6
WP_003386384.1\|2712896_2713076_-	Spo0E family sporulation regulatory protein-aspartic acid phosphatase	NA	NA	NA	NA
WP_004452043.1\|2713520_2713658_-	hypothetical protein	NA	NA	NA	NA
2713343:2713362	attR	NA	NA	NA	NA
WP_003386388.1\|2714048_2714303_+	hypothetical protein	NA	NA	NA	NA
WP_004452045.1\|2715037_2715346_+	hypothetical protein	NA	NA	NA	NA
WP_004452046.1\|2715673_2716342_-	YsnF/AvaK domain-containing protein	NA	NA	NA	NA
WP_004452048.1\|2716420_2716897_-	YsnF/AvaK domain-containing protein	NA	NA	NA	NA
WP_004452050.1\|2717023_2717224_-	hypothetical protein	NA	NA	NA	NA
WP_079007496.1\|2717342_2717456_-	DnaD domain protein	NA	NA	NA	NA
WP_004452051.1\|2717951_2718236_-	hypothetical protein	NA	NA	NA	NA
WP_004452053.1\|2718246_2719050_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A0A7RUC1	Clostridium_phage	5.0e-77	53.6
WP_004452056.1\|2719030_2719834_-	recombinase RecT	H7BUU1	unidentified_phage	1.6e-59	54.3
WP_004452057.1\|2720150_2720354_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003397157.1\|2720560_2720713_+	hypothetical protein	NA	NA	NA	NA
WP_015957707.1\|2720930_2722601_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_015957949.1\|2722686_2723307_-	uridine kinase	A0A1V0SAA3	Catovirus	3.7e-35	39.6
WP_015958170.1\|2723452_2724679_-	U32 family peptidase	Q6DW11	Phage_TP	1.5e-51	37.0
WP_004452060.1\|2724671_2725328_-	O-methyltransferase	NA	NA	NA	NA
WP_004452061.1\|2725410_2726442_-	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_012100455.1\|2726519_2728346_-	translational GTPase TypA	A0A1B0RXH7	Streptococcus_phage	7.8e-17	38.5
WP_004452066.1\|2728986_2730696_-	ribonuclease J	NA	NA	NA	NA
WP_003385810.1\|2730743_2731196_-	transcriptional repressor	NA	NA	NA	NA
WP_004452069.1\|2731317_2731572_-	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_004440635.1\|2731585_2731999_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_003385813.1\|2732205_2732457_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_004452073.1\|2732571_2735211_-\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	3.2e-64	33.0

DBSCAN-SWA_4

2877406 : 2883455

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003399225.1\|2877406_2877976_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-50	57.3
WP_003399226.1\|2877987_2879043_-	dTDP-glucose 4,6-dehydratase	K7QJG5	Escherichia_phage	9.2e-79	46.4
WP_003399227.1\|2879061_2879955_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.6e-39	36.2
WP_003399228.1\|2879959_2880880_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.3e-101	62.5
WP_003399229.1\|2881330_2882437_-	LegC family aminotransferase	A0A2K9L470	Tupanvirus	1.5e-39	29.1
WP_003399230.1\|2882462_2883455_-	GDP-mannose 4,6-dehydratase	A0A2K9L0I7	Tupanvirus	6.1e-32	31.8

DBSCAN-SWA_5

3110470 : 3120005

Synechococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003403046.1\|3110470_3111970_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.1e-68	46.3
WP_015958132.1\|3112183_3112801_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.1e-26	39.8
WP_003403054.1\|3112927_3113923_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	7.6e-67	43.4
WP_003403058.1\|3114094_3115543_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.4e-58	35.1
WP_015957931.1\|3115634_3116339_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SLB8	Cyanophage	6.0e-42	41.9
WP_003403061.1\|3116338_3116818_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.4e-26	48.1
WP_015957582.1\|3117449_3120005_-	selenium-dependent xanthine dehydrogenase	A0A0P0IVM8	Acinetobacter_phage	1.7e-09	32.4

DBSCAN-SWA_6

3271339 : 3279971

Clostridium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003403517.1\|3271339_3272425_-	hypothetical protein	A0A0A7RU66	Clostridium_phage	3.5e-142	70.4
WP_003403518.1\|3272436_3273435_-	hypothetical protein	A0A0A7RW91	Clostridium_phage	2.7e-141	73.2
WP_003403519.1\|3273446_3273722_-	hypothetical protein	NA	NA	NA	NA
WP_003403520.1\|3273724_3275746_-	hypothetical protein	A0A0A7RU09	Clostridium_phage	1.3e-57	48.5
WP_003403521.1\|3275757_3277266_-	hypothetical protein	A0A0A7RU28	Clostridium_phage	1.4e-93	37.9
WP_003403522.1\|3277277_3278264_-	hypothetical protein	A0A0A7RU61	Clostridium_phage	6.5e-111	60.4
WP_003403525.1\|3278265_3279615_-	caspase family protein	A0A0A7RW86	Clostridium_phage	2.1e-75	75.1
WP_003403527.1\|3279629_3279971_-	hypothetical protein	A0A0A7S0S4	Clostridium_phage	1.0e-15	54.3

DBSCAN-SWA_7

3283251 : 3293610

Clostridium_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003403534.1\|3283251_3283476_-	hypothetical protein	A0A0A7RW80	Clostridium_phage	3.1e-21	67.6
WP_003403536.1\|3283453_3283870_-	hypothetical protein	A0A0A7S0S0	Clostridium_phage	6.0e-42	64.5
WP_003403549.1\|3283884_3284772_-	hypothetical protein	A0A0A7RTZ9	Clostridium_phage	4.5e-119	74.7
WP_003403551.1\|3284776_3285196_-	hypothetical protein	A0A0A7RU17	Clostridium_phage	6.0e-58	72.7
WP_003403554.1\|3285201_3285549_-	hypothetical protein	A0A0A7RU51	Clostridium_phage	5.6e-33	59.8
WP_003403564.1\|3285553_3285919_-	hypothetical protein	A0A0A7RW73	Clostridium_phage	5.9e-33	57.0
WP_003403567.1\|3285918_3286203_-	hypothetical protein	A0A0A7S0R4	Clostridium_phage	1.0e-24	60.2
WP_003403570.1\|3286707_3287229_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	1.4e-35	49.4
WP_003403572.1\|3287341_3287662_-	hypothetical protein	NA	NA	NA	NA
WP_003403574.1\|3287718_3288519_-	ATP-binding protein	A0A2K9V3L7	Faecalibacterium_phage	9.9e-33	34.8
WP_003403575.1\|3288508_3289414_-	phage replisome organizer N-terminal domain-containing protein	A8ASN4	Listeria_phage	4.2e-40	40.2
WP_003403576.1\|3289507_3289720_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003403577.1\|3289781_3289991_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003360073.1\|3290182_3290593_+	helix-turn-helix domain-containing protein	A0A0A7RUJ5	Clostridium_phage	1.0e-09	56.2
WP_003403583.1\|3290892_3291042_+	hypothetical protein	NA	NA	NA	NA
WP_003403585.1\|3292122_3293610_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	8.2e-65	37.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_010379

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_010379_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010379_1

28-866

TypeV-U3

II-B:NA

Consensus_repeat	Method
GTTTAACTTCTACATTATATGTATTTAAA	CRISPRCasFinder
TACATTAGATGTATTTAAA	CRT
TTTAACTTCTACATTANATGTATTTAAA	CRT

12 spacers

c2c10_CAS-V-U3

The CRISPR arrays of NC_010379_1

>merge|NC_010379|1|28-866|CRISPRCasFinder,CRT,CRT
GTTTAACTTCTACATTATATGTATTTAAAGCATTGAAAGCATAAAAAATAAACTAGAAAAATATAAGTTTAACTTGTACATTAGATGTATTTAAAGTTTAAAGATTATAAGTTAAGGATATGTTTTTAATGCTTAACTTTTGCATTAGATGTATTTAAACTATTGATTGACAAAAATTTTTAGTTTTATTTAAGCTTAACTTTTACATTAGGTGTATTTAAACGGAGGTTTTTGTAATGCTAAATCCTATAAAAAACAAGTTTAATTTGTACATTAGATGTATTTAAACTAAATAAGGAACCTACTAATTTTTTATTGTTATTAAAGTTTAACTTATATATTAGATGTATTTAAGCCCTCCATTTCTAAACTATAATTAATTATGCTTAACTTTTGCATACGATGCATTTAAACCTTTATGTGAGTTCTTTTTTATTATATTGTTATTGAGCAAGAACTCCAATTTTACTGTTTTATAAATTAGTTTAACTTCTACATTAGATGTATTTAAAATTCCGTTTTTTTAAAATAGGAAATTTTTAATAAAAAAAGACTTTTAACTTCTACATTAAATGTATTTAAACACGCATATTTGAAATATGGAAAATGGAGTAAGATGGATTTAACTTATATATTAGATATATTTAAACTACCGATTTATAAAAATTTTTAGTTTTATTTAAGTTTAACTTCTGCATTGGATGTATTTAAAAACTTTCAGAAGGCATATTTTCTTAAATATTTGGTTTAACTTCTACATTATATGTATTTAAACGTTGTAAAATATGTAGGTGGAGCTAAGGAGTGTAAGTTTAACTTCTACATTAGATGTATTTAAA

>NC_010379|1|1|28-866|CRISPRCasFinder
GTTTAACTTCTACATTATATGTATTTAAA	GCATTGAAAGCATAAAAAATAAACTAGAAAAATATAA
GTTTAACTTGTACATTAGATGTATTTAAA	GTTTAAAGATTATAAGTTAAGGATATGTTTTTAAT
GCTTAACTTTTGCATTAGATGTATTTAAA	CTATTGATTGACAAAAATTTTTAGTTTTATTTAA
GCTTAACTTTTACATTAGGTGTATTTAAA	CGGAGGTTTTTGTAATGCTAAATCCTATAAAAAACAA
GTTTAATTTGTACATTAGATGTATTTAAA	CTAAATAAGGAACCTACTAATTTTTTATTGTTATTAAA
GTTTAACTTATATATTAGATGTATTTAAG	CCCTCCATTTCTAAACTATAATTAATTAT
GCTTAACTTTTGCATACGATGCATTTAAA	CCTTTATGTGAGTTCTTTTTTATTATATTGTTATTGAGCAAGAACTCCAATTTTACTGTTTTATAAATTA
GTTTAACTTCTACATTAGATGTATTTAAA	ATTCCGTTTTTTTAAAATAGGAAATTTTTAATAAAAAAAGAC
TTTTAACTTCTACATTAAATGTATTTAAA	CACGCATATTTGAAATATGGAAAATGGAGTAAGATGG
ATTTAACTTATATATTAGATATATTTAAA	CTACCGATTTATAAAAATTTTTAGTTTTATTTAA
GTTTAACTTCTGCATTGGATGTATTTAAA	AACTTTCAGAAGGCATATTTTCTTAAATATTTG
GTTTAACTTCTACATTATATGTATTTAAA	CGTTGTAAAATATGTAGGTGGAGCTAAGGAGTGTAA
GTTTAACTTCTACATTAGATGTATTTAAA

>NC_010379|1|1|38-440|CRT
TACATTATATGTATTTAAA	GCATTGAAAGCATAAAAAATAAACTAGAAAAATATAAGTTTAACTTG
TACATTAGATGTATTTAAA	GTTTAAAGATTATAAGTTAAGGATATGTTTTTAATGCTTAACTTT
TGCATTAGATGTATTTAAA	CTATTGATTGACAAAAATTTTTAGTTTTATTTAAGCTTAACTTT
TACATTAGGTGTATTTAAA	CGGAGGTTTTTGTAATGCTAAATCCTATAAAAAACAAGTTTAATTTG
TACATTAGATGTATTTAAA	CTAAATAAGGAACCTACTAATTTTTTATTGTTATTAAAGTTTAACTTA
TATATTAGATGTATTTAAG	CCCTCCATTTCTAAACTATAATTAATTATGCTTAACTTT
TGCATACGATGCATTTAAACCTTTATGTGAGTTCTTTTTTATTATATTGTTATTGAGCAAGAACTCCAATTTTACTGTTTTATAAATTAGTTTAACTTCTACATTAGATGTATTTAAA	ATTCCGTTTTTTTAAAATAGGAAATTTTTAATAAAAAAAGACT
TTTAACTTCTACATTAAATGTATTTAAA	CACGCATATTTGAAATATGGAAAATGGAGTAAGATGGA
TTTAACTTATATATTAGATATATTTAAA	CTACCGATTTATAAAAATTTTTAGTTTTATTTAAG
TTTAACTTCTGCATTGGATGTATTTAAA	AACTTTCAGAAGGCATATTTTCTTAAATATTTGG
TTTAACTTCTACATTATATGTATTTAAA	CGTTGTAAAATATGTAGGTGGAGCTAAGGAGTGTAAG


>NC_010379|1|2|512-866|CRT
	GCATTGAAAGCATAAAAAATAAACTAGAAAAATATAAGTTTAACTTG
TACATTAGATGTATTTAAA	GTTTAAAGATTATAAGTTAAGGATATGTTTTTAATGCTTAACTTT
TGCATTAGATGTATTTAAA	CTATTGATTGACAAAAATTTTTAGTTTTATTTAAGCTTAACTTT
TACATTAGGTGTATTTAAA	CGGAGGTTTTTGTAATGCTAAATCCTATAAAAAACAAGTTTAATTTG
TACATTAGATGTATTTAAA	CTAAATAAGGAACCTACTAATTTTTTATTGTTATTAAAGTTTAACTTA
TATATTAGATGTATTTAAG	CCCTCCATTTCTAAACTATAATTAATTATGCTTAACTTT
TGCATACGATGCATTTAAACCTTTATGTGAGTTCTTTTTTATTATATTGTTATTGAGCAAGAACTCCAATTTTACTGTTTTATAAATTAGTTTAACTTCTACATTAGATGTATTTAAA	ATTCCGTTTTTTTAAAATAGGAAATTTTTAATAAAAAAAGACT
TTTAACTTCTACATTAAATGTATTTAAA	CACGCATATTTGAAATATGGAAAATGGAGTAAGATGGA
TTTAACTTATATATTAGATATATTTAAA	CTACCGATTTATAAAAATTTTTAGTTTTATTTAAG
TTTAACTTCTGCATTGGATGTATTTAAA	AACTTTCAGAAGGCATATTTTCTTAAATATTTGG
TTTAACTTCTACATTATATGTATTTAAA	CGTTGTAAAATATGTAGGTGGAGCTAAGGAGTGTAAG
TTTAACTTCTACATTAGATGTATTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010379.1\|WP_012291514.1\|1648_2119_+\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_012291539.1\|2172_2817_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_003401892.1\|5145_6174_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353
NC_010379.1\|WP_003401884.1\|6465_6858_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NC_010379.1\|WP_003401904.1\|1062_1290_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_003401898.1\|3204_3651_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|366099
NC_010379.1\|WP_012291550.1\|2835_3069_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_003362366.1\|3844_4987_-\|transposase	c2c10_CAS-V-U3	-	gnl\|CDD\|223747
NC_010379.1\|WP_003401907.1\|892_1033_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_012291557.1\|6254_6440_+\|hypothetical-protein	unknown	unknown	unknown

>NC_010379.1|WP_003401907.1|892_1033_-|hypothetical-protein
MLERIAMKLATKIGLNLEDLLKVIYKKANSLIIQIAICFFIYYMCK
>NC_010379.1|WP_003401904.1|1062_1290_-|hypothetical-protein
MSNMSYCRFQNTVEDLEECLNVLTDREELSTRENNAAKRMLKNIAEWVRAECIVDGDGEIDYEEIESIINQCKEK
>NC_010379.1|WP_012291514.1|1648_2119_+|hypothetical-protein
MKNYLKNYVNHIIFICIAVEILSLVILISRKCSIENIILLYILPFILVLFITILNNFKDSNKSNIDDKYELIDTLDLYRSKNQFIQKKEINNDTIYCFSCIDREQNISTEIIKENTENHVIVKKINHYKAYVEIYKNIYDKKNVYIIYLPKRLALT
>NC_010379.1|WP_012291539.1|2172_2817_-|hypothetical-protein
MMLNINKKLMNLPDDKKEKVKKIINNNSYTKQIFNLINIMLEKELTQEQMRKFAKLNLLILKRQSKLCIEEYKMYFSIKKQFPVKFNEDNTGYENNIRSSIDLNMYISDTVKTICIVGTALSSQIDEIQEKNIISEHELCQILSLNYILWTKNKKKVERKMENPKWSDIMYIYDCETVYNRKTATDKGFWNTSPIYTALTECKFKNDLCCSKKQ
>NC_010379.1|WP_012291550.1|2835_3069_-|hypothetical-protein
MNLNKQITKHLIEMDYNNINNFKKDIIGNKEIDIIKKIDIISTLNAAIAVINESKGINNIDNDNLINIKDDFKFAFI
>NC_010379.1|WP_003401898.1|3204_3651_-|single-stranded-DNA-binding-protein
MNKVVLIGRLTKDPELKFTPGNGTAVANFTLAVDRRFSKDGQREADFIPIVVWGKQAESTANYMSKGKLMGVSGRIQTRSYEAKDGTKRYITEVIAEEVKFLEWGDKATTDSSYNNGSESSYQSGQDFGNGNSFDDDIIPVDDGDIPF
>NC_010379.1|WP_003362366.1|3844_4987_-|transposase
MKGVDIIEITITSKIQIYPTNEQIDILNNTMFQIRKALNYISKYIFNNNCLNQKKINEDTYYYLRETYGLKSQMAQSCIKTTIAKYKTNKSNGHDFTLVHFKNLEYDIVWNRDYSIKSDIFSINSLQGRLKIPYETKGMEKYFDGSYSFGTAKLVFKFNKYFLYIPMTKDYPQTTPFEINKIVGIDLGINFLATIYDSYGKTTFYNGRHIKAKRGHYKILRKQLQQCGSKSARRKIKSIGSRENRYVNDINHTITKALVDKYGANTLFVLEDLTNVRNTTEKVNINNRYVSVSWTFYQFRQLLEYKAKMNNSIVISVNPKYTSQTCPKCGHIEKANRDKKKHIFKCKNCNYQSNDDRIGSINLWRKGLEYIEQFSKEHSE
>NC_010379.1|WP_003401892.1|5145_6174_-|C40-family-peptidase
MIKNKLKIILCSAIIGGSIIGFYHPIVNAAPAEKDLTIEIQKLDNDLSNLTIKLNDNKDKNSKLINEIKQNEKFIQNKKEEIKETENMLNAQMRDYYIENDNNSNNALVLLLSSENMSDFLNKAKIMKIVLEEGNTTIKTLEKDKQDIIKTNEKLSKDKKEIEKNTSSIKNDIKTIDDKKKELKVKLEELNKAKINNASNTNSIIAQQNHAEYNDFLKIGSVVNSKNDIGNSVVNLATKFLGVPYVWGGTTPQGFDCSGLVLYCYNAYGISLPRISQEQQQVGIDVPLSQAKAGDLVFFHGYPATHVGIYMGNGYYIHAPHTGDVVKISPLGDYTNIKRIMP
>NC_010379.1|WP_012291557.1|6254_6440_+|hypothetical-protein
MEEIFKIDYLLPCDSSSSEGYSKSTTVEDATDKLKLYLSNKYNIDFADIAILSCTPIEIIQ
>NC_010379.1|WP_003401884.1|6465_6858_-|LemA-family-protein
MYSVLLMIIFSLYIIYTLLQYLENHKCKKQKQLENIYQKRNAIIPILISIAESTIYDNKVIQSELNHLKENLNDLRINDNDLMVVNYNISTSLDNFIICSSNTPELKENIEFMKLVLEIEEAEVDIKRLK

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Crispr_ID: NC_010379_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010379_2

57130-57256

Orphan

Consensus_repeat	Method
AAAAAGTGTTTCACTTTTGTCGTGCACTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010379_2

>merge|NC_010379|2|57130-57256|CRISPRCasFinder
AAAAAGTGTTTCATTTCTATCGTTCACTTTTTAAAAAATGTTTTATTTTTATCGTGTACTTTTTAAATACATTTAGTATTTTTTATAAGGGAACCAAAAAGTGTTTCACTTTTGTCGTGCACTTTTT

>NC_010379|2|2|57130-57256|CRISPRCasFinder
AAAAAGTGTTTCATTTCTATCGTTCACTTTT	TAAAAAATGTTTTATTTTTATCGTGTACTTTTTAAATACATTTAGTATTTTTTATAAGGGAACC
AAAAAGTGTTTCACTTTTGTCGTGCACTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010379.1\|WP_012291501.1\|61481_62549_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NC_010379.1\|WP_003404202.1\|59257_59569_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_041173299.1\|63048_63612_+\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_003404208.1\|60160_60499_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372047
NC_010379.1\|WP_003362436.1\|59801_60050_-\|sporulation-transcriptional-regulator-SpoIIID	unknown	unknown	gnl\|CDD\|378813
NC_010379.1\|WP_003404193.1\|49972_50509_-\|botulinum-neurotoxin-transcription-activating-sigma-factor-BotR	unknown	unknown	gnl\|CDD\|132253
NC_010379.1\|WP_012291513.1\|64181_64847_-\|DUF1292-domain-containing-protein	unknown	unknown	gnl\|CDD\|212067
NC_010379.1\|WP_003362424.1\|40430_40643_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_012291520.1\|50735_51620_+\|ricin-type-beta-trefoil-lectin-domain-protein	unknown	unknown	gnl\|CDD\|214672
NC_010379.1\|WP_003404192.1\|46217_49811_-\|non-toxic-nonhemagglutinin-NTNH	unknown	unknown	gnl\|CDD\|366783
NC_010379.1\|WP_012291542.1\|59571_59781_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|273934
NC_010379.1\|WP_003362431.1\|54840_55098_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_003404211.1\|60914_61145_+\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_012291519.1\|42316_46192_-\|botulinum-neurotoxin-type-B	unknown	unknown	gnl\|CDD\|366783
NC_010379.1\|WP_012291512.1\|52136_54017_+\|botulinum-neurotoxin-hemagglutinin-HA70-subunit	unknown	unknown	gnl\|CDD\|308877
NC_010379.1\|WP_012291548.1\|61186_61504_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_012291526.1\|55570_57058_+\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_012291566.1\|51682_52123_+\|hemagglutinin	unknown	unknown	gnl\|CDD\|283282
NC_010379.1\|WP_012291496.1\|57730_58768_+\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_003404190.1\|40227_40395_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010379.1\|WP_012291513.1\|64181_64847_-\|DUF1292-domain-containing-protein	gnl\|CDD\|212067	cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain. GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.	0.00335171
NC_010379.1\|WP_003404192.1\|46217_49811_-\|non-toxic-nonhemagglutinin-NTNH	gnl\|CDD\|366783	pfam01742, Peptidase_M27, Clostridial neurotoxin zinc protease. These toxins are zinc proteases that block neurotransmitter release by proteolytic cleavage of synaptic proteins such as synaptobrevins, syntaxin and SNAP-25.	1.37679e-139
NC_010379.1\|WP_003404208.1\|60160_60499_-\|hypothetical-protein	gnl\|CDD\|372047	pfam12327, FtsZ_C, FtsZ family, C-terminal domain. This family includes the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea.	0.00461533
NC_010379.1\|WP_012291501.1\|61481_62549_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	6.43047e-30
NC_010379.1\|WP_012291519.1\|42316_46192_-\|botulinum-neurotoxin-type-B	gnl\|CDD\|366783	pfam01742, Peptidase_M27, Clostridial neurotoxin zinc protease. These toxins are zinc proteases that block neurotransmitter release by proteolytic cleavage of synaptic proteins such as synaptobrevins, syntaxin and SNAP-25.	0
NC_010379.1\|WP_003362436.1\|59801_60050_-\|sporulation-transcriptional-regulator-SpoIIID	gnl\|CDD\|378813	pfam12116, SpoIIID, Stage III sporulation protein D. This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.	2.01583e-38
NC_010379.1\|WP_003404193.1\|49972_50509_-\|botulinum-neurotoxin-transcription-activating-sigma-factor-BotR	gnl\|CDD\|132253	TIGR03209, P-21_partial, clostridium toxin-associated regulator BotR. Clostridium botulinum neurotoxin production is regulated by a regulatory sigma-70 protein, BotR transcription regulator. Similarly, tetanus toxin production of Clostridium tetani is regulated by TetR which is a very close relative of BotR. Both BotR and TetR are members of the TIGR02937 subfamily of sigma-70 RNA polymerase sigma factors. Functional complementation experiments have been done for botR and tetR in highly transformable strain of Clostridium perfringens host cells to assess functional interchangeability of sigma factors and it has been confirmed that they are interchangeable in vivo.	7.62906e-65
NC_010379.1\|WP_012291542.1\|59571_59781_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|273934	TIGR02027, DNA-directed_RNA_polymerase_subunit_alpha, DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type. This family consists of the bacterial (and chloroplast) DNA-directed RNA polymerase alpha subunit, encoded by the rpoA gene. The RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The amino terminal domain is involved in dimerizing and assembling the other RNA polymerase subunits into a transcriptionally active enzyme. The carboxy-terminal domain contains determinants for interaction with DNA and with transcriptional activator proteins. [Transcription, DNA-dependent RNA polymerase].	3.91921e-08
NC_010379.1\|WP_012291566.1\|51682_52123_+\|hemagglutinin	gnl\|CDD\|283282	pfam05588, Botulinum_HA-17, Clostridium botulinum HA-17 domain. This family consists of several Clostridium botulinum hemagglutinin (HA) subcomponents. Clostridium botulinum type D strain 4947 produces two different sizes of progenitor toxins (M and L) as intact forms without proteolytic processing. The M toxin is composed of neurotoxin (NT) and nontoxic-nonhemagglutinin (NTNHA), whereas the L toxin is composed of the M toxin and hemagglutinin (HA) subcomponents (HA-70, HA-17, and HA-33).	1.4093e-78
NC_010379.1\|WP_012291512.1\|52136_54017_+\|botulinum-neurotoxin-hemagglutinin-HA70-subunit	gnl\|CDD\|308877	pfam03505, Clenterotox, Clostridium enterotoxin.	2.9643e-100
NC_010379.1\|WP_012291520.1\|50735_51620_+\|ricin-type-beta-trefoil-lectin-domain-protein	gnl\|CDD\|214672	smart00458, RICIN, Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.	1.65184e-09

>NC_010379.1|WP_012291526.1|55570_57058_+|hypothetical-protein
MDIPDIPEYLIETIFENIDQRLKQNFYNFYENLFNMNNKEENLKLLIKDIIQKEFMVAELTKISDMDLHKTKHTFIAPDKINKLKRYNLQQIKQTKKRWYNSLFKKKKTNPFNIEIETANNNITLYGPEVFFNLYKVRSIEELKDIRAAQFKDWLDNSIFITDFFYLKSKTNKQINTAFNLDFIYNICTIIYDKWNNNLNFIYMEYPKLLLDHPLVADGSGKIKVHKQTIIQQNQSNKDVKYKYNDYVSKDGITRILVPESNIDTKQSRLIDNKDLNILSNILKYKKADFLTNKTIVFNLIDIINNIYCSKTVRSYEDLRNRIAKMTLLKFNFFRTDNTSGIPDAVYGIFSSYEYLDKSQNRVKVYVDSILYDKILKNQVYTIYNDKINQLNDDFAKTLVIYLQQEKLVLYTQGKNTTFLSYDYFSNLVRFRYKKEERNYKIIAQALENMKCNNIIIRDFKKHMNGFIITFLDTNQFEISDLFSNKNTSDIIPMI
>NC_010379.1|WP_003362431.1|54840_55098_-|hypothetical-protein
MKIKHPKVNEYYNYLKESFANVNLSEEHRMDIYKRIEIIEALVGLYEQKYEFDDEIIEDLKLKYRPVFPEELKNIQKNLEKTIIK
>NC_010379.1|WP_012291512.1|52136_54017_+|botulinum-neurotoxin-hemagglutinin-HA70-subunit
MNSSIKKIYNHIQEKVINYSDTIDLADGNYVVSRGDGWILSRQNQILGGSVISNGSTGIVGDLRVNDNAIPYYYPTPSFNEEYIKNNIQTVFANFTEANQIPIGFEFSKTAPSNKNLYMYLQYTYIRYEIIKVLQHEIIERAVLYVPSLGYVKSIEFNPGEKINKDFYFLTNDKCILNEQFLYKKILETTKNIPTNNIFNSKVSSTQRVLPYSNGLYVINKGDGYIRTNDKDLIGTLLIEAGSSGSIIQPRLRNTTRPLFTTSNDAKFSQQYTEERLKDAFNVQLFNTSTSLFKFVEEAPSNKNICIKAYNTYEKYELIDYQNGSIVNKAEYYLPSLGYCEVTNAPSPESEVVKTQVAEDGFIQNGPEEEIVVGVIDPSENIQEINTAISDNYTYNIPGIVNNNPFYILFTVNTTGIYKINAQNNLPSLKIYEAIGSGNRNFQSGNLCDDDIKAINYITGFDSPNAKSYLVVLLNKDKNYYIRVPQTSSNIENQIKFKREEGDLRNLMNSSVNIIDNLNSTGAHYYTRQSPDVHDYISYEFTIPGNFNNKDTSNIRLYTSYNQGIGTLFRVTETIDGYNLINIQQNLNLLNSTKSIRLLNGAIYILKVEVTELNNYNIKLHIDITN
>NC_010379.1|WP_012291566.1|51682_52123_+|hemagglutinin
MSAERTFLPNGNYNIKSIFSGSLYLSPVSGSLTFSNESSANNQKWNVEYMAENRCFKISNVAEPNKYLSYDNFGFISLDSLSNRCYWFPIKIAVNTYIMLSLNKVNELDYAWDIYDTNENILSQPLLLLPNFDIYNSNQMFKLEKI
>NC_010379.1|WP_012291520.1|50735_51620_+|ricin-type-beta-trefoil-lectin-domain-protein
MEHYSTIQNSLNDKIVTISCKANTDLFFYQVPGNGNVSLFQQTRNYLERWRIIYDSNKAAYKIKSMNIYNTNLVLTWNAPTHNISAQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSSYIKFIIEDYVISDFKNFTCRISPILAGGKVVQQVSMTNLAVNLYIWNNDLNQKWTIIYNEEKAAYQFFNKILSNGVLTWIFSDGNTVRVSSSAQNNDAQYWLINPVSDNYDRYTITNLRDKTKVLDLYGGQTADGTTIQVFNSNGGDNQIWTMSNP
>NC_010379.1|WP_003404193.1|49972_50509_-|botulinum-neurotoxin-transcription-activating-sigma-factor-BotR
MNKLFLQIEMLKNDNEEFQEIFKHFEKTINIFTRKYNIYDNYNDILYHLWYTLKKVDLSNFNTQNDLERYISRTLKRYCLDICNKRKIDKKIIYNSEIADKKLSLIANSYSSYSEFEFNDLISILPDDQKKIIYMKFVEDIKEIDIAKKLNISRQSVYKNKIMALERLEPILKKLINM
>NC_010379.1|WP_003404192.1|46217_49811_-|non-toxic-nonhemagglutinin-NTNH
MNINDNLSINSPVDNKNVVVVRARKTDTVFKAFKVAPNIWVAPERYYGESLSIDEEYKVDGGIYDSNFLSQDSEKDKFLQAIITLLKRINSTNAGEKLLSLISTAIPFPYGYIGGGYYAPNMITFGSAPKSNKKLNSLISSTIPFPYAGYRETNYLSSEDNKSFYASNIVIFGPGANIVENNTVFYKKEDAENGMGTMTEIWFQPFLTYKYDEFYIDPAIELIKCLIKSLYFLYGIKPSDDLVIPYRLRSELENIEYSQLNIVDLLVSGGIDPKFINTDPYWFTDNYFSNAKKVFEDHRNIYETQIEGNNAIGNDIKLRLKQKFRININDIWELNLNYFSKEFSIMMPDRFNNALKHFYRKQYYKIDYPENYSINGFVNGQINVQLSLSDRNQDIINKPEEIINLLNGNNVSLMRSNIYGDGLKSTVDDFYSNYKIPYNRAYEYHFNNSNDSSLDNVNIGVIDNIPEIIDVNPYKENCDKFSPVQKITSTREINTNIPWPINYLQAQNTNNEKFSLSSDFVEVVSSKDKSLVYSFLSNVMFYLDSIKDNSPIDTDKKYYLWLREIFRNYSFDITATQEINTDCGINKVVTWFGKALNILNTSDSFVEEFQNLGPISLINKKENLSMPIIEIYGIPNDMLGLPLNDLNEKLFNIYLKNILYFKKVYFNFLDQWWTEYYSQYFDLICMAKQSILAQEKLIKQIIQNKLQDLFKADISMDKLNLMNLATEKTFIDLSNESQIAINNINDFLNKSAICVFDTNIYPKFISFMEQCINSVNSNVTAFIQKCTNITEDEKLQLIKLNTFMNIDFEFFDIQSIKDLITSETDLIKEEKESDYNLFLFTLQEDNNKVIEDISGKNTLVKYSDSISLVYGVNGDALYLKEPDESVSFSNKAFENGLTNSFSICFWLRNLGEDIITSKLIENKADNCGWEIYFENNGLVFSIVDCNGNEENIYLSDVISKNWYYISISIDRLRNQLLIFINDKLIANQSIEQILNIYSSNTISLVNENNPIYIEGLSILNRSITSEEVVNNYFSYLNNSYIRDISGERLEYNKTYELYNYVFPENSLYEVTENNNIYLSIKDTNNLNIQGAKFKLINIDANKQYVQKWDEGVVCLLGDEEKYVDISSENNRIQLVNSKDTAKRIIFNNDIFMPNCLTFAYNNKYLSLSLRDRNYNWMICNNNDNIPKAAHLWALKGI
>NC_010379.1|WP_012291519.1|42316_46192_-|botulinum-neurotoxin-type-B
MPVTINNFNYNDPIDNNNIIMMEPPFARGTGRYYKAFKITDRIWIIPERYTFGYKPEDFNKSSGIFNRDVCEYYDPDYLNTNDKKNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISNPGEVERKKGIFANLIIFGPGPVLNENETIDIGIQNHFASREGFGGIMQMKFCPEYVSVFNNVQENKGASIFNRRGYFSDPALILMHELIHVLHGLYGIKVDDLPIVPNEKKFFMQSTDAIQAEELYTFGGQDPSIITPSTDKSIYDKVLQNFRGIVDRLNKVLVCISDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLMFGFTETNIAENYKIKTRASYFSDSLPPVKIKNLLDNEIYTIEEGFNISDKDMEKEYRGQNKAINKQAYEEISKEHLAVYKIQMCKSVKAPGICIDVDNEDLFFIADKNSFSDDLSKNERIEYNTQSNYIENDFPINELILDTDLISKIELPSENTESLTDFNVDVPVYEKQPAIKKIFTDENTIFQYLYSQTFPLDIRDISLTSSFDDALLFSNKVYSFFSMDYIKTANKVVEAGLFAGWVKQIVNDFVIEANKSNTMDKIADISLIVPYIGLALNVGNETAKGNFENAFEIAGASILLEFIPELLIPVVGAFLLESYIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTIKEGMYKALNYQAQALEEIIKYRYNIYSEKEKSNINIDFNDINSKLNEGINQAIDNINNFINGCSVSYLMKKMIPLAVEKLLDFDNTLKKNLLNYIDENKLYLIGSAEYEKSKVNKYLKTIMPFDLSIYTNDTILIEMFNKYNSEILNNIILNLRYKDNNLIDLSGYGAKVEVYDGVELNDKNQFKLTSSANSKIRVTQNQNIIFNSVFLDFSVSFWIRIPKYKNDGIQNYIHNEYTIINCMKNNSGWKISIRGNRIIWTLIDINGKTKSVFFEYNIREDISEYINRWFFVTITNNLNNAKIYINGKLESNTDIKDIREVIANGEIIFKLDGDIDRTQFIWMKYFSIFNTELSQSNIEERYKIQSYSEYLKDFWGNPLMYNKEYYMFNAGNKNSYIKLKKDSPVGEILTRSKYNQNSKYINYRDLYIGEKFIIRRKSNSQSINDDIVRKEDYIYLDFFNLNQEWRVYTYKYFKKEEEKLFLAPISDSDEFYNTIQIKEYDEQPTYSCQLLFKKDEESTDEIGLIGIHRFYESGIVFEEYKDYFCISKWYLKEVKRKPYNLKLGCNWQFIPKDEGWTE
>NC_010379.1|WP_003362424.1|40430_40643_-|hypothetical-protein
MISIKRKDEIWNAIYAEPCLLDFNTLNTEELSFAIGIIISAGSRNSFKEDHFNKEQLKFLKKVFKELLKL
>NC_010379.1|WP_003404190.1|40227_40395_-|hypothetical-protein
MIKTKLFTGVTVLEAVYDYQDFIKRNQNLEIISVNILKDNFVLLTYKMFKEDIKG
>NC_010379.1|WP_012291496.1|57730_58768_+|hypothetical-protein
MALAIEKLFFNVSKNLIHFITEPIPLYHYKTISFNKCCYCPFYKKMNDKNIHNYCSNYCNNKYKKVIKKYNIYSNINIDKTHIQFSLTQIKQMLIYYYYANSKGFVSLISKKRIAKMIGCCEKTVDINNKLFSDLGLILISGTINNKFSLIIKDYSEHYSKNNAGYLNLATNVFKDLLHINNVNALRIALQGILKHDINTILDRETYFSINSMKAFLPEYINCKSAIEKIICKLNSNTITMLFNSSEKLIFVISKNLHGKLLKKEMYYKYKNNFLNYITENNIKLNNLSHSINNIVKLSFEYGYDIVQLMLGEIKDIAPTIFNVGGYIRDKIKRYIYMNEPFFAI
>NC_010379.1|WP_003404202.1|59257_59569_-|hypothetical-protein
MEILYYVNNETNSLLVTTEEKDHMHYIKTNKKDFLKYKKAGYAIITSAEMDFDLCLKMFSPTFKEKIINIIKKAIQNEYIIAEKRTDNKYTISVIDSNFKLVL
>NC_010379.1|WP_012291542.1|59571_59781_-|DNA-directed-RNA-polymerase-subunit-alpha
MRKNKRDELRELNLSIRAYNSLRNMGINTLEDLSMYSKKQLYQFKGIGIVSLRKIEKGLDKKNMKMEAV
>NC_010379.1|WP_003362436.1|59801_60050_-|sporulation-transcriptional-regulator-SpoIIID
MKDYIKERALDVSNYVINTKSTVRKTAKVFGVAKSTIHRDITERLPKINPEVAKEVQKVLDYNKSERHLRGGLATKIKYKII
>NC_010379.1|WP_003404208.1|60160_60499_-|hypothetical-protein
MEKIFINKLNSNQKILVTEEYIELLEYKTNLSSISDIYYFKQTGFIEKCECSKGIKRNEDLNGGGMNSCISIWNLRKGWKPVLKNIMTLNEFNEVVKVIAERIDDNNLFTKK
>NC_010379.1|WP_003404211.1|60914_61145_+|hypothetical-protein
MYENLDIFQFGEYIINIFSEKKYKEIDVFFNDMHMKIDKESTVNNIVQSYTNEIVDSFQNTSNCNKIYSIFKRKDY
>NC_010379.1|WP_012291548.1|61186_61504_-|hypothetical-protein
MTSKSLNRSVIAFYEDEVLDMTILEILNDITTKRNRSNKIKDILIEYFNEKYPEEFNEVKNRLSENMEQKTTPKKVSINKNNQSSKEDDALINLVENNKDKWGSL
>NC_010379.1|WP_012291501.1|61481_62549_-|ParM/StbA-family-protein
MKNIIAGVDTGFGYGIGMTNDTEVKMKNYINNITEKEALNIADTIKELNDENTLIKYNGKYFICGDACIERYPDTMQRLNRDRIKDEYHLIELLSIVGQLTKESEFNLYLCVGLPNRSKGDSKKFEDWLKGSAFEFSYLCNFGEVKKKVYIKDVTCLPQAYSPIFTLPRNDMNKTIFSVDIGHSTLDLMLVKNMQTVMASDTLLDGEGCIRIYNNLKQALIRQNEDKKITYYSYSQLQEILENGNYSLYGEEQQIENILNRCLEEYAEYVFFTIENNMYKYMPTVDTFIFSGGLLNNNTFKTILSDKFKQAYKIPLLVQNNRSQYTIAEGLKEYSNIKYADKLEVVKENDIKVAK
>NC_010379.1|WP_041173299.1|63048_63612_+|hypothetical-protein
MAESVPALLLLLITTGTNVLLFLVDFSYFESLVLLVFGVDLFLLIVSSFLDLEKEFDLKLLFVFDLFEFSFIEELLGVLTELLELGLILSLDFPLFPEEKELDLKLLFVLLVVEELLDLGLIAVLDGLDELLVEKEFDLKPLLELDRLELDLKLLELLLLPEEKELEEGLEEKELDLKLLLCDPPLA
>NC_010379.1|WP_012291513.1|64181_64847_-|DUF1292-domain-containing-protein
MNKIIEFTTKEKEKYSKQYTDILFNIDNLKDLLEEDKLKLRKFYSSSKILKEYLDLIDEANIKADGKGLFEYFKNDSKYKEELEKFKQKHIKNFIQIEECLKCSCFNCVKDCTFNSCLGCKEGSCISNCDHNTFNITIFRDDKIIKLTNDATGEDTNFKILAIIQLLESNKQYILLENILDSEDKYILYYFTTIHGEEFEQIEDGSEIDKIAEIFYSQKSN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_010379_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010379_3

57457-57652

Orphan

Consensus_repeat	Method
AAAAAGTGTTTCACTTTTGTCGTGCACTTTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_010379_3

>merge|NC_010379|3|57457-57652|CRISPRCasFinder
AAAAAGTGTTTCATTTTTGTCGTGTACTTTTATGATTTATTCTTTAGTTATTTTATTATATTTAATCTCAACACTAGTGATTATATAGTGTTCTAAAAAAGTGTTTCACTTTTGTCGTGCACTTTTTTTATAATATTAGGTTGTTGTATTTACTTTATTTGTTCAAAAAGTTGTTTCACTTTTGTCGTGCACTTTT

>NC_010379|3|3|57457-57652|CRISPRCasFinder
AAAAAGTGTTTCATTTTTGTCGTGTACTTTT	ATGATTTATTCTTTAGTTATTTTATTATATTTAATCTCAACACTAGTGATTATATAGTGTTCTA
AAAAAGTGTTTCACTTTTGTCGTGCACTTTT	TTTATAATATTAGGTTGTTGTATTTACTTTATTTGTTCA
AAAAGTTGTTTCACTTTTGTCGTGCACTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010379.1\|WP_012291501.1\|61481_62549_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NC_010379.1\|WP_003404202.1\|59257_59569_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_041173299.1\|63048_63612_+\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_003404208.1\|60160_60499_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372047
NC_010379.1\|WP_003362436.1\|59801_60050_-\|sporulation-transcriptional-regulator-SpoIIID	unknown	unknown	gnl\|CDD\|378813
NC_010379.1\|WP_003404193.1\|49972_50509_-\|botulinum-neurotoxin-transcription-activating-sigma-factor-BotR	unknown	unknown	gnl\|CDD\|132253
NC_010379.1\|WP_012291513.1\|64181_64847_-\|DUF1292-domain-containing-protein	unknown	unknown	gnl\|CDD\|212067
NC_010379.1\|WP_003362424.1\|40430_40643_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_012291520.1\|50735_51620_+\|ricin-type-beta-trefoil-lectin-domain-protein	unknown	unknown	gnl\|CDD\|214672
NC_010379.1\|WP_003404192.1\|46217_49811_-\|non-toxic-nonhemagglutinin-NTNH	unknown	unknown	gnl\|CDD\|366783
NC_010379.1\|WP_012291542.1\|59571_59781_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|273934
NC_010379.1\|WP_003362431.1\|54840_55098_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_003404211.1\|60914_61145_+\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_012291519.1\|42316_46192_-\|botulinum-neurotoxin-type-B	unknown	unknown	gnl\|CDD\|366783
NC_010379.1\|WP_012291512.1\|52136_54017_+\|botulinum-neurotoxin-hemagglutinin-HA70-subunit	unknown	unknown	gnl\|CDD\|308877
NC_010379.1\|WP_012291548.1\|61186_61504_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_012291526.1\|55570_57058_+\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_012291566.1\|51682_52123_+\|hemagglutinin	unknown	unknown	gnl\|CDD\|283282
NC_010379.1\|WP_012291496.1\|57730_58768_+\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_003404190.1\|40227_40395_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010379.1\|WP_012291513.1\|64181_64847_-\|DUF1292-domain-containing-protein	gnl\|CDD\|212067	cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain. GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.	0.00335171
NC_010379.1\|WP_003404192.1\|46217_49811_-\|non-toxic-nonhemagglutinin-NTNH	gnl\|CDD\|366783	pfam01742, Peptidase_M27, Clostridial neurotoxin zinc protease. These toxins are zinc proteases that block neurotransmitter release by proteolytic cleavage of synaptic proteins such as synaptobrevins, syntaxin and SNAP-25.	1.37679e-139
NC_010379.1\|WP_003404208.1\|60160_60499_-\|hypothetical-protein	gnl\|CDD\|372047	pfam12327, FtsZ_C, FtsZ family, C-terminal domain. This family includes the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea.	0.00461533
NC_010379.1\|WP_012291501.1\|61481_62549_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	6.43047e-30
NC_010379.1\|WP_012291519.1\|42316_46192_-\|botulinum-neurotoxin-type-B	gnl\|CDD\|366783	pfam01742, Peptidase_M27, Clostridial neurotoxin zinc protease. These toxins are zinc proteases that block neurotransmitter release by proteolytic cleavage of synaptic proteins such as synaptobrevins, syntaxin and SNAP-25.	0
NC_010379.1\|WP_003362436.1\|59801_60050_-\|sporulation-transcriptional-regulator-SpoIIID	gnl\|CDD\|378813	pfam12116, SpoIIID, Stage III sporulation protein D. This stage III sporulation protein is a small DNA-binding family that is essential for gene expression of the mother-cell compartment during sporulation. The domain is found in bacteria and viruses, and is about 40 amino acids in length. It has a conserved RGG sequence motif.	2.01583e-38
NC_010379.1\|WP_003404193.1\|49972_50509_-\|botulinum-neurotoxin-transcription-activating-sigma-factor-BotR	gnl\|CDD\|132253	TIGR03209, P-21_partial, clostridium toxin-associated regulator BotR. Clostridium botulinum neurotoxin production is regulated by a regulatory sigma-70 protein, BotR transcription regulator. Similarly, tetanus toxin production of Clostridium tetani is regulated by TetR which is a very close relative of BotR. Both BotR and TetR are members of the TIGR02937 subfamily of sigma-70 RNA polymerase sigma factors. Functional complementation experiments have been done for botR and tetR in highly transformable strain of Clostridium perfringens host cells to assess functional interchangeability of sigma factors and it has been confirmed that they are interchangeable in vivo.	7.62906e-65
NC_010379.1\|WP_012291542.1\|59571_59781_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|273934	TIGR02027, DNA-directed_RNA_polymerase_subunit_alpha, DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type. This family consists of the bacterial (and chloroplast) DNA-directed RNA polymerase alpha subunit, encoded by the rpoA gene. The RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The amino terminal domain is involved in dimerizing and assembling the other RNA polymerase subunits into a transcriptionally active enzyme. The carboxy-terminal domain contains determinants for interaction with DNA and with transcriptional activator proteins. [Transcription, DNA-dependent RNA polymerase].	3.91921e-08
NC_010379.1\|WP_012291566.1\|51682_52123_+\|hemagglutinin	gnl\|CDD\|283282	pfam05588, Botulinum_HA-17, Clostridium botulinum HA-17 domain. This family consists of several Clostridium botulinum hemagglutinin (HA) subcomponents. Clostridium botulinum type D strain 4947 produces two different sizes of progenitor toxins (M and L) as intact forms without proteolytic processing. The M toxin is composed of neurotoxin (NT) and nontoxic-nonhemagglutinin (NTNHA), whereas the L toxin is composed of the M toxin and hemagglutinin (HA) subcomponents (HA-70, HA-17, and HA-33).	1.4093e-78
NC_010379.1\|WP_012291512.1\|52136_54017_+\|botulinum-neurotoxin-hemagglutinin-HA70-subunit	gnl\|CDD\|308877	pfam03505, Clenterotox, Clostridium enterotoxin.	2.9643e-100
NC_010379.1\|WP_012291520.1\|50735_51620_+\|ricin-type-beta-trefoil-lectin-domain-protein	gnl\|CDD\|214672	smart00458, RICIN, Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.	1.65184e-09

>NC_010379.1|WP_012291526.1|55570_57058_+|hypothetical-protein
MDIPDIPEYLIETIFENIDQRLKQNFYNFYENLFNMNNKEENLKLLIKDIIQKEFMVAELTKISDMDLHKTKHTFIAPDKINKLKRYNLQQIKQTKKRWYNSLFKKKKTNPFNIEIETANNNITLYGPEVFFNLYKVRSIEELKDIRAAQFKDWLDNSIFITDFFYLKSKTNKQINTAFNLDFIYNICTIIYDKWNNNLNFIYMEYPKLLLDHPLVADGSGKIKVHKQTIIQQNQSNKDVKYKYNDYVSKDGITRILVPESNIDTKQSRLIDNKDLNILSNILKYKKADFLTNKTIVFNLIDIINNIYCSKTVRSYEDLRNRIAKMTLLKFNFFRTDNTSGIPDAVYGIFSSYEYLDKSQNRVKVYVDSILYDKILKNQVYTIYNDKINQLNDDFAKTLVIYLQQEKLVLYTQGKNTTFLSYDYFSNLVRFRYKKEERNYKIIAQALENMKCNNIIIRDFKKHMNGFIITFLDTNQFEISDLFSNKNTSDIIPMI
>NC_010379.1|WP_003362431.1|54840_55098_-|hypothetical-protein
MKIKHPKVNEYYNYLKESFANVNLSEEHRMDIYKRIEIIEALVGLYEQKYEFDDEIIEDLKLKYRPVFPEELKNIQKNLEKTIIK
>NC_010379.1|WP_012291512.1|52136_54017_+|botulinum-neurotoxin-hemagglutinin-HA70-subunit
MNSSIKKIYNHIQEKVINYSDTIDLADGNYVVSRGDGWILSRQNQILGGSVISNGSTGIVGDLRVNDNAIPYYYPTPSFNEEYIKNNIQTVFANFTEANQIPIGFEFSKTAPSNKNLYMYLQYTYIRYEIIKVLQHEIIERAVLYVPSLGYVKSIEFNPGEKINKDFYFLTNDKCILNEQFLYKKILETTKNIPTNNIFNSKVSSTQRVLPYSNGLYVINKGDGYIRTNDKDLIGTLLIEAGSSGSIIQPRLRNTTRPLFTTSNDAKFSQQYTEERLKDAFNVQLFNTSTSLFKFVEEAPSNKNICIKAYNTYEKYELIDYQNGSIVNKAEYYLPSLGYCEVTNAPSPESEVVKTQVAEDGFIQNGPEEEIVVGVIDPSENIQEINTAISDNYTYNIPGIVNNNPFYILFTVNTTGIYKINAQNNLPSLKIYEAIGSGNRNFQSGNLCDDDIKAINYITGFDSPNAKSYLVVLLNKDKNYYIRVPQTSSNIENQIKFKREEGDLRNLMNSSVNIIDNLNSTGAHYYTRQSPDVHDYISYEFTIPGNFNNKDTSNIRLYTSYNQGIGTLFRVTETIDGYNLINIQQNLNLLNSTKSIRLLNGAIYILKVEVTELNNYNIKLHIDITN
>NC_010379.1|WP_012291566.1|51682_52123_+|hemagglutinin
MSAERTFLPNGNYNIKSIFSGSLYLSPVSGSLTFSNESSANNQKWNVEYMAENRCFKISNVAEPNKYLSYDNFGFISLDSLSNRCYWFPIKIAVNTYIMLSLNKVNELDYAWDIYDTNENILSQPLLLLPNFDIYNSNQMFKLEKI
>NC_010379.1|WP_012291520.1|50735_51620_+|ricin-type-beta-trefoil-lectin-domain-protein
MEHYSTIQNSLNDKIVTISCKANTDLFFYQVPGNGNVSLFQQTRNYLERWRIIYDSNKAAYKIKSMNIYNTNLVLTWNAPTHNISAQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTVARNLKLSTLNNSSYIKFIIEDYVISDFKNFTCRISPILAGGKVVQQVSMTNLAVNLYIWNNDLNQKWTIIYNEEKAAYQFFNKILSNGVLTWIFSDGNTVRVSSSAQNNDAQYWLINPVSDNYDRYTITNLRDKTKVLDLYGGQTADGTTIQVFNSNGGDNQIWTMSNP
>NC_010379.1|WP_003404193.1|49972_50509_-|botulinum-neurotoxin-transcription-activating-sigma-factor-BotR
MNKLFLQIEMLKNDNEEFQEIFKHFEKTINIFTRKYNIYDNYNDILYHLWYTLKKVDLSNFNTQNDLERYISRTLKRYCLDICNKRKIDKKIIYNSEIADKKLSLIANSYSSYSEFEFNDLISILPDDQKKIIYMKFVEDIKEIDIAKKLNISRQSVYKNKIMALERLEPILKKLINM
>NC_010379.1|WP_003404192.1|46217_49811_-|non-toxic-nonhemagglutinin-NTNH
MNINDNLSINSPVDNKNVVVVRARKTDTVFKAFKVAPNIWVAPERYYGESLSIDEEYKVDGGIYDSNFLSQDSEKDKFLQAIITLLKRINSTNAGEKLLSLISTAIPFPYGYIGGGYYAPNMITFGSAPKSNKKLNSLISSTIPFPYAGYRETNYLSSEDNKSFYASNIVIFGPGANIVENNTVFYKKEDAENGMGTMTEIWFQPFLTYKYDEFYIDPAIELIKCLIKSLYFLYGIKPSDDLVIPYRLRSELENIEYSQLNIVDLLVSGGIDPKFINTDPYWFTDNYFSNAKKVFEDHRNIYETQIEGNNAIGNDIKLRLKQKFRININDIWELNLNYFSKEFSIMMPDRFNNALKHFYRKQYYKIDYPENYSINGFVNGQINVQLSLSDRNQDIINKPEEIINLLNGNNVSLMRSNIYGDGLKSTVDDFYSNYKIPYNRAYEYHFNNSNDSSLDNVNIGVIDNIPEIIDVNPYKENCDKFSPVQKITSTREINTNIPWPINYLQAQNTNNEKFSLSSDFVEVVSSKDKSLVYSFLSNVMFYLDSIKDNSPIDTDKKYYLWLREIFRNYSFDITATQEINTDCGINKVVTWFGKALNILNTSDSFVEEFQNLGPISLINKKENLSMPIIEIYGIPNDMLGLPLNDLNEKLFNIYLKNILYFKKVYFNFLDQWWTEYYSQYFDLICMAKQSILAQEKLIKQIIQNKLQDLFKADISMDKLNLMNLATEKTFIDLSNESQIAINNINDFLNKSAICVFDTNIYPKFISFMEQCINSVNSNVTAFIQKCTNITEDEKLQLIKLNTFMNIDFEFFDIQSIKDLITSETDLIKEEKESDYNLFLFTLQEDNNKVIEDISGKNTLVKYSDSISLVYGVNGDALYLKEPDESVSFSNKAFENGLTNSFSICFWLRNLGEDIITSKLIENKADNCGWEIYFENNGLVFSIVDCNGNEENIYLSDVISKNWYYISISIDRLRNQLLIFINDKLIANQSIEQILNIYSSNTISLVNENNPIYIEGLSILNRSITSEEVVNNYFSYLNNSYIRDISGERLEYNKTYELYNYVFPENSLYEVTENNNIYLSIKDTNNLNIQGAKFKLINIDANKQYVQKWDEGVVCLLGDEEKYVDISSENNRIQLVNSKDTAKRIIFNNDIFMPNCLTFAYNNKYLSLSLRDRNYNWMICNNNDNIPKAAHLWALKGI
>NC_010379.1|WP_012291519.1|42316_46192_-|botulinum-neurotoxin-type-B
MPVTINNFNYNDPIDNNNIIMMEPPFARGTGRYYKAFKITDRIWIIPERYTFGYKPEDFNKSSGIFNRDVCEYYDPDYLNTNDKKNIFLQTMIKLFNRIKSKPLGEKLLEMIINGIPYLGDRRVPLEEFNTNIASVTVNKLISNPGEVERKKGIFANLIIFGPGPVLNENETIDIGIQNHFASREGFGGIMQMKFCPEYVSVFNNVQENKGASIFNRRGYFSDPALILMHELIHVLHGLYGIKVDDLPIVPNEKKFFMQSTDAIQAEELYTFGGQDPSIITPSTDKSIYDKVLQNFRGIVDRLNKVLVCISDPNININIYKNKFKDKYKFVEDSEGKYSIDVESFDKLYKSLMFGFTETNIAENYKIKTRASYFSDSLPPVKIKNLLDNEIYTIEEGFNISDKDMEKEYRGQNKAINKQAYEEISKEHLAVYKIQMCKSVKAPGICIDVDNEDLFFIADKNSFSDDLSKNERIEYNTQSNYIENDFPINELILDTDLISKIELPSENTESLTDFNVDVPVYEKQPAIKKIFTDENTIFQYLYSQTFPLDIRDISLTSSFDDALLFSNKVYSFFSMDYIKTANKVVEAGLFAGWVKQIVNDFVIEANKSNTMDKIADISLIVPYIGLALNVGNETAKGNFENAFEIAGASILLEFIPELLIPVVGAFLLESYIDNKNKIIKTIDNALTKRNEKWSDMYGLIVAQWLSTVNTQFYTIKEGMYKALNYQAQALEEIIKYRYNIYSEKEKSNINIDFNDINSKLNEGINQAIDNINNFINGCSVSYLMKKMIPLAVEKLLDFDNTLKKNLLNYIDENKLYLIGSAEYEKSKVNKYLKTIMPFDLSIYTNDTILIEMFNKYNSEILNNIILNLRYKDNNLIDLSGYGAKVEVYDGVELNDKNQFKLTSSANSKIRVTQNQNIIFNSVFLDFSVSFWIRIPKYKNDGIQNYIHNEYTIINCMKNNSGWKISIRGNRIIWTLIDINGKTKSVFFEYNIREDISEYINRWFFVTITNNLNNAKIYINGKLESNTDIKDIREVIANGEIIFKLDGDIDRTQFIWMKYFSIFNTELSQSNIEERYKIQSYSEYLKDFWGNPLMYNKEYYMFNAGNKNSYIKLKKDSPVGEILTRSKYNQNSKYINYRDLYIGEKFIIRRKSNSQSINDDIVRKEDYIYLDFFNLNQEWRVYTYKYFKKEEEKLFLAPISDSDEFYNTIQIKEYDEQPTYSCQLLFKKDEESTDEIGLIGIHRFYESGIVFEEYKDYFCISKWYLKEVKRKPYNLKLGCNWQFIPKDEGWTE
>NC_010379.1|WP_003362424.1|40430_40643_-|hypothetical-protein
MISIKRKDEIWNAIYAEPCLLDFNTLNTEELSFAIGIIISAGSRNSFKEDHFNKEQLKFLKKVFKELLKL
>NC_010379.1|WP_003404190.1|40227_40395_-|hypothetical-protein
MIKTKLFTGVTVLEAVYDYQDFIKRNQNLEIISVNILKDNFVLLTYKMFKEDIKG
>NC_010379.1|WP_012291496.1|57730_58768_+|hypothetical-protein
MALAIEKLFFNVSKNLIHFITEPIPLYHYKTISFNKCCYCPFYKKMNDKNIHNYCSNYCNNKYKKVIKKYNIYSNINIDKTHIQFSLTQIKQMLIYYYYANSKGFVSLISKKRIAKMIGCCEKTVDINNKLFSDLGLILISGTINNKFSLIIKDYSEHYSKNNAGYLNLATNVFKDLLHINNVNALRIALQGILKHDINTILDRETYFSINSMKAFLPEYINCKSAIEKIICKLNSNTITMLFNSSEKLIFVISKNLHGKLLKKEMYYKYKNNFLNYITENNIKLNNLSHSINNIVKLSFEYGYDIVQLMLGEIKDIAPTIFNVGGYIRDKIKRYIYMNEPFFAI
>NC_010379.1|WP_003404202.1|59257_59569_-|hypothetical-protein
MEILYYVNNETNSLLVTTEEKDHMHYIKTNKKDFLKYKKAGYAIITSAEMDFDLCLKMFSPTFKEKIINIIKKAIQNEYIIAEKRTDNKYTISVIDSNFKLVL
>NC_010379.1|WP_012291542.1|59571_59781_-|DNA-directed-RNA-polymerase-subunit-alpha
MRKNKRDELRELNLSIRAYNSLRNMGINTLEDLSMYSKKQLYQFKGIGIVSLRKIEKGLDKKNMKMEAV
>NC_010379.1|WP_003362436.1|59801_60050_-|sporulation-transcriptional-regulator-SpoIIID
MKDYIKERALDVSNYVINTKSTVRKTAKVFGVAKSTIHRDITERLPKINPEVAKEVQKVLDYNKSERHLRGGLATKIKYKII
>NC_010379.1|WP_003404208.1|60160_60499_-|hypothetical-protein
MEKIFINKLNSNQKILVTEEYIELLEYKTNLSSISDIYYFKQTGFIEKCECSKGIKRNEDLNGGGMNSCISIWNLRKGWKPVLKNIMTLNEFNEVVKVIAERIDDNNLFTKK
>NC_010379.1|WP_003404211.1|60914_61145_+|hypothetical-protein
MYENLDIFQFGEYIINIFSEKKYKEIDVFFNDMHMKIDKESTVNNIVQSYTNEIVDSFQNTSNCNKIYSIFKRKDY
>NC_010379.1|WP_012291548.1|61186_61504_-|hypothetical-protein
MTSKSLNRSVIAFYEDEVLDMTILEILNDITTKRNRSNKIKDILIEYFNEKYPEEFNEVKNRLSENMEQKTTPKKVSINKNNQSSKEDDALINLVENNKDKWGSL
>NC_010379.1|WP_012291501.1|61481_62549_-|ParM/StbA-family-protein
MKNIIAGVDTGFGYGIGMTNDTEVKMKNYINNITEKEALNIADTIKELNDENTLIKYNGKYFICGDACIERYPDTMQRLNRDRIKDEYHLIELLSIVGQLTKESEFNLYLCVGLPNRSKGDSKKFEDWLKGSAFEFSYLCNFGEVKKKVYIKDVTCLPQAYSPIFTLPRNDMNKTIFSVDIGHSTLDLMLVKNMQTVMASDTLLDGEGCIRIYNNLKQALIRQNEDKKITYYSYSQLQEILENGNYSLYGEEQQIENILNRCLEEYAEYVFFTIENNMYKYMPTVDTFIFSGGLLNNNTFKTILSDKFKQAYKIPLLVQNNRSQYTIAEGLKEYSNIKYADKLEVVKENDIKVAK
>NC_010379.1|WP_041173299.1|63048_63612_+|hypothetical-protein
MAESVPALLLLLITTGTNVLLFLVDFSYFESLVLLVFGVDLFLLIVSSFLDLEKEFDLKLLFVFDLFEFSFIEELLGVLTELLELGLILSLDFPLFPEEKELDLKLLFVLLVVEELLDLGLIAVLDGLDELLVEKEFDLKPLLELDRLELDLKLLELLLLPEEKELEEGLEEKELDLKLLLCDPPLA
>NC_010379.1|WP_012291513.1|64181_64847_-|DUF1292-domain-containing-protein
MNKIIEFTTKEKEKYSKQYTDILFNIDNLKDLLEEDKLKLRKFYSSSKILKEYLDLIDEANIKADGKGLFEYFKNDSKYKEELEKFKQKHIKNFIQIEECLKCSCFNCVKDCTFNSCLGCKEGSCISNCDHNTFNITIFRDDKIIKLTNDATGEDTNFKILAIIQLLESNKQYILLENILDSEDKYILYYFTTIHGEEFEQIEDGSEIDKIAEIFYSQKSN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_010379_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010379_4

147909-148770

TypeI-B

II-B

Consensus_repeat	Method
GTTTAACTTCTACATTATATGTATTTAAA	CRISPRCasFinder

13 spacers

cas5,cas7b,cas8b1,cas6

The CRISPR arrays of NC_010379_4

>merge|NC_010379|4|147909-148770|CRISPRCasFinder
GTTTAACTTCTACATTATATGTATTTAAATGTAAAGAACAGAAAAAGGTAATTAAAAAATTAAATGTTTAACTTCTACATTAGATGTATTTAAACATAATAATCTTTATAAAAAGAAATAAAAAGGAATAGTTTAACTTATATATTATATGTATTTAAACAATTAATTTGTTCTCTCATTTGTAAATATACATATATTTAACTTCTACATTAGATGTATTTAAACAAAATCGGAGGCTTTTTAATAATATTTTTAATAAGTTTAATTGCTACATTAGATGTATTTAAAGTTTTAAAATTATAAGTTAAGGATATGGTTTTAATGTTTAACTTCTGCATTGGATGTATTTAAACATTATATATATATCTTTAAAAATATTTTTCTCATTATTTAACTTCTACATTATATGTATTTAAACTACCGAAAAACACAAAAAAGATATAAGAATTTTTCCTATATGTTTAACTTGTACATTAGATGTATTTAAACAACAGGAAATGGAGGTTTTGCAAATGCATAGATATAAGTTTAACTTTTACATTAGATGTATTTAAACCAAACATTAAATTTATAATCTGAAAAGGGGAAGTTTAACTTTTACATTACATGTATTTAAAAAACCTCCAATTTTTAGTTTTGCTAAATTAATTTAACTTTTACATTAGATGTATTTAAAGTACAACTATGTACTATTATTTGTTTAACTTCTACATTAGATGTATTTAAACAAAGGGGCACACAGGAGGTTTTACAAATGCATAAATATAAGTTTAACTTTTATATTAGATGTATTTAAACTATAATTTTACCTCTGACTTTGGTATTTTATAAATGTTTAACTTCTACATTAGATGTATTTAAA

>NC_010379|4|4|147909-148770|CRISPRCasFinder
GTTTAACTTCTACATTATATGTATTTAAA	TGTAAAGAACAGAAAAAGGTAATTAAAAAATTAAAT
GTTTAACTTCTACATTAGATGTATTTAAA	CATAATAATCTTTATAAAAAGAAATAAAAAGGAATA
GTTTAACTTATATATTATATGTATTTAAA	CAATTAATTTGTTCTCTCATTTGTAAATATACATAT
ATTTAACTTCTACATTAGATGTATTTAAA	CAAAATCGGAGGCTTTTTAATAATATTTTTAATAA
GTTTAATTGCTACATTAGATGTATTTAAA	GTTTTAAAATTATAAGTTAAGGATATGGTTTTAAT
GTTTAACTTCTGCATTGGATGTATTTAAA	CATTATATATATATCTTTAAAAATATTTTTCTCATT
ATTTAACTTCTACATTATATGTATTTAAA	CTACCGAAAAACACAAAAAAGATATAAGAATTTTTCCTATAT
GTTTAACTTGTACATTAGATGTATTTAAA	CAACAGGAAATGGAGGTTTTGCAAATGCATAGATATAA
GTTTAACTTTTACATTAGATGTATTTAAA	CCAAACATTAAATTTATAATCTGAAAAGGGGAA
GTTTAACTTTTACATTACATGTATTTAAA	AAACCTCCAATTTTTAGTTTTGCTAAATTA
ATTTAACTTTTACATTAGATGTATTTAAA	GTACAACTATGTACTATTATTT
GTTTAACTTCTACATTAGATGTATTTAAA	CAAAGGGGCACACAGGAGGTTTTACAAATGCATAAATATAA
GTTTAACTTTTATATTAGATGTATTTAAA	CTATAATTTTACCTCTGACTTTGGTATTTTATAAAT
GTTTAACTTCTACATTAGATGTATTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010379.1\|WP_012291540.1\|139092_140565_-\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348
NC_010379.1\|WP_004451751.1\|141003_141948_-\|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl\|CDD\|223407
NC_010379.1\|WP_004451748.1\|142374_142959_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_003401908.1\|147065_147827_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
NC_010379.1\|WP_004451745.1\|144121_145987_+\|hypothetical-protein	cas8b1	mkCas0106_cas8b1_CAS-I-B	unknown
NC_010379.1\|WP_004451747.1\|143363_144095_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|187783
NC_010379.1\|WP_004451750.1\|142065_142299_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_004451758.1\|138457_139039_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223498
NC_010379.1\|WP_004451755.1\|140701_140890_-\|hypothetical-protein	unknown	unknown	unknown
NC_010379.1\|WP_012291552.1\|146036_146975_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458

Protein	Function_ID	Function_description	E-value
NC_010379.1\|WP_012291552.1\|146036_146975_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.21801e-20
NC_010379.1\|WP_003401908.1\|147065_147827_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	3.32009e-35
NC_010379.1\|WP_004451747.1\|143363_144095_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	4.42053e-10
NC_010379.1\|WP_004451751.1\|141003_141948_-\|SPFH/Band-7/PHB-domain-protein	gnl\|CDD\|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	3.32762e-64
NC_010379.1\|WP_004451758.1\|138457_139039_-\|hypothetical-protein	gnl\|CDD\|223498	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism].	9.88681e-08
NC_010379.1\|WP_012291540.1\|139092_140565_-\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	1.15011e-57

>NC_010379.1|WP_003401908.1|147065_147827_+|type-I-B-CRISPR-associated-protein-Cas5
MEAIKFNLSGPTTFFKKPDVNSYAYFTYNNIHKIALLGILGSIIGLKGYNQQKSIDTYPEFYDKLKTLKISIVPKSKTGYFTKKFQTFTNNTGFYNIDINKRPCTLVYREQWLENVSWDIYILLDENSVDKKILNKLKDYLLNKKCHFIPYLGKNDHTADITNVELINLKAIQAHEKLIRIQSLFLTDNFNITGEKHSPNERLIILKEMLPTELDEFDNSYRFSNLSFTNLIVQPNTSKTLIYQDSLSNLYFF
>NC_010379.1|WP_012291552.1|146036_146975_+|type-I-CRISPR-associated-protein-Cas7
MNKKVYGLLGVTAVRSNYNADFSSHPRTSATGEFIATDKTFKYACRKYWTLDKEKVLAFSNLNDNLNPMTLQEKYEYLFNTTIDKKTTKPIDVLSNLFSCLDVLNFGATFAISKLNFSINGAVQIQQGKNVYEYTKAEKLSLLTPYRNPKDKDDGSEKGRTTTAEQHILDRAEFIYPFSINPENYDEYVGLVPNFNGYTEEAYIKFKEAARVGVTSLNTCSKAGCENNFALFIELKDSSKAYLPNLSSYLKYDFDSINIFDLTNIFTELLEEIKEEVEKVEVYYNKYLSDIVIPNTDIKVERRNILTGKEMI
>NC_010379.1|WP_004451745.1|144121_145987_+|hypothetical-protein
MIIDMMHNFKHLYDENGDNLIVDNYPLKQGVYIIVNDRGIRDFMVIKDKEAIPKDKEELFKYLRHRDYLSILKQYDTNKAVSGRAKSIHSNNFLSLFIRENKSSHILEGSSLNPSLEQQVGWYFDQFKKWQEEERQAHNNNDPSNPQEFILTTLEDFDEQLFNKSKKAILNSLSNLPELLSEYTLADKDYIRIFYEMPIEYYNKEYKRYMIRKIFNKNVYHIFKDNNVYGISDIDLTTNNNKPSLLLYSMKTRVPLRLDFDTLLIAQKLFDFLYFYKVPKYNKESKALEYVNSIYKTLYIPMDFNIDNLDLNKYTNTGQPVYYITTGNGQSFNVINYDIIYPFDSNIDFSFNDYLSLDEDVYENDEDNISDTSNISNIKTLLDLERIVDKYFFNFNLVSNYHSDKFINNKKYTLPNNISCMLFSSKHLFHDWFRKGIDLDIIDPITNVMDNLISLWANDPDISLIKIKNMLNLRWSILDYLYEREGYAPMEVKEHFEAIHYNLKEKIHDKSLEEKYINNTEEFYYACGQLIYYLLTQNKKTLKKQQSTSKFLQCRNSSTLKIEILKLYEEVANNISAYNYRFNNLYSMVSTYNDSNDTKDYIDYLLGGLYQKSIIYEKKKQ
>NC_010379.1|WP_004451747.1|143363_144095_+|CRISPR-associated-endoribonuclease-Cas6
MRTIVFFSTVIDMLSYYELLLEIKLNKDIHFSKSYEMLSKFFNRVMLTDNYLKTLHERKGVKLYSFSGLYPAATNQIYKRNALYKIRIRSFDPEFICAMQFSLSQIQDNDINIISIKFIKNQQQFITELVSINPVIFSIWEKQNYWQIGDNIDLLGKQLTNNLLHKYNTISCNKLTTQDTIFHCLNITNNKTIYIPYKKGLLLGNKLKIQVKEDDISQTLATVALGAGIGEKNSIGMGFCYGH
>NC_010379.1|WP_004451748.1|142374_142959_-|hypothetical-protein
MINMELVNMVNKKNSLYTEDYLKLDPAIEPLVNYINNYFPTVASCSSHKNRKGKYIGNAYVLFYLTKEDIKQYFHLKQKLEHKGCLYNVVLNLYCVENGNVTEKYSFIKNQQTKYLGCVLEIKPKFSFLNREKLFMAYYKECNIPFLEEKINITLERENYRNTINPSFSVYKYIEKEPKIVKEYKKQKFNALMH
>NC_010379.1|WP_004451750.1|142065_142299_-|hypothetical-protein
MKNRDFCKHCGEKLAVRSKEDKSSNKIIFSKVCPICGYSIRADISEVSAMESFNSEKEYYNTINSIALIRNTTNFKL
>NC_010379.1|WP_004451751.1|141003_141948_-|SPFH/Band-7/PHB-domain-protein
MKVLFIIFILFLLITTIIASIKIVNTGYVYVVERLGKYHRTLEPGWHIIIPYVDFVRQRISTKQQILDIEPQSVITKDNVNISIDNVIFYKILDPKAAVYNIENYQAGIVYSSITNMRNIVGNMTLDEILSTGREEINKKLLAIIDEVTDAYGIKVFSVEVKGIVPPRDILASMEKQLKAERDKRAMILQSEGEKQAAIYKAEGLKESAILNAEAEKEANIRRAEGLRESQLLEAEGKAKAIAQIAKAEADAIRNVNASIIESGTNETVIALKQVEALKEMAKGPANKLILPNETLSSLGNIAAIGDIIKNKDM
>NC_010379.1|WP_004451755.1|140701_140890_-|hypothetical-protein
MDNNLLEEENTMGVGCENCRCHSCLRAIIHEGSPNDCYSCNVCSDEWNNSKYSSKCERYIEY
>NC_010379.1|WP_012291540.1|139092_140565_-|DNA-cytosine-methyltransferase
MIKRRIMKKSQRGIYIQDKELINTLFNAGKNFKYLIDIENHKLVIVPSNTKTNNTISRRKYKDTIKPVIDIRSKEAIAIFKSNYLELKIDKNKITIEEYAKEKQLYCSKEEIIKKTNRIIQLSKKTILDNLNLAAGNDQLSFLDSIGSINITASTNSSNINTTMFNNALSSSILPLTVCSIFSGAGLMDKSFLDDFDIIFALDNDRAACETYGKNLGSHILHEDISKVSNNIPHATVLIGGSPCQGFSNSNRVSNYLDNPKNLLVREYIKAVKSSQPYIFVLENVPQIISAGKGKFLEEIKNELYDYEITSTILNAVHFGVAQERRRAVIIGSKIGKINIFNPIKRFTNTVKNAFKGLTNKIANQLDYSKSKDIVKRRMSYIPMGGNVFDIPDQLRPRSTHSNSYVRLDLNRPSVTIVNPRKSVILHPTEDRIISVRECARLQGIDDDFIFYGNLAEKQQQVCNSIPLPMFRYIAKIIKKHINQYNVALR
>NC_010379.1|WP_004451758.1|138457_139039_-|hypothetical-protein
MYFENLSNILKEGIKEDYAINKFTISKNNIRAMLEGIPQGEYVTLTCKGEVVMSNTPMEKRTNAYFVQHAHGDILIAGLGIGLIVLAIQNKKEVKSITVIEKSSDVIDLIAKQLPLNSKVKIINADIFKWKSENDKYDVIYLDIWNYINSDVYEKEMKPLKEGFKDYLKNKIQSPNRFIKCWAEYEAKNNIRL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010379_1	1.1\|57\|37\|NC_010379\|CRISPRCasFinder	57-93	37	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71181-71217	0	1.0
NC_010379_1	1.1\|57\|37\|NC_010379\|CRISPRCasFinder	57-93	37	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208168-208204	0	1.0
NC_010379_1	1.1\|57\|37\|NC_010379\|CRISPRCasFinder	57-93	37	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	57-93	0	1.0
NC_010379_1	1.2\|123\|35\|NC_010379\|CRISPRCasFinder	123-157	35	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	123-157	0	1.0
NC_010379_1	1.3\|187\|34\|NC_010379\|CRISPRCasFinder	187-220	34	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71118-71151	0	1.0
NC_010379_1	1.3\|187\|34\|NC_010379\|CRISPRCasFinder	187-220	34	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208234-208267	0	1.0
NC_010379_1	1.3\|187\|34\|NC_010379\|CRISPRCasFinder	187-220	34	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	187-220	0	1.0
NC_010379_1	1.4\|250\|37\|NC_010379\|CRISPRCasFinder	250-286	37	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208485-208521	0	1.0
NC_010379_1	1.4\|250\|37\|NC_010379\|CRISPRCasFinder	250-286	37	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	250-286	0	1.0
NC_010379_1	1.4\|250\|37\|NC_010379\|CRISPRCasFinder	250-286	37	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	70864-70900	0	1.0
NC_010379_1	1.4\|250\|37\|NC_010379\|CRISPRCasFinder	250-286	37	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28390-28426	0	1.0
NC_010379_1	1.5\|316\|38\|NC_010379\|CRISPRCasFinder	316-353	38	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	316-353	0	1.0
NC_010379_1	1.6\|383\|29\|NC_010379\|CRISPRCasFinder	383-411	29	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	70739-70767	0	1.0
NC_010379_1	1.6\|383\|29\|NC_010379\|CRISPRCasFinder	383-411	29	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28198-28226	0	1.0
NC_010379_1	1.6\|383\|29\|NC_010379\|CRISPRCasFinder	383-411	29	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208618-208646	0	1.0
NC_010379_1	1.6\|383\|29\|NC_010379\|CRISPRCasFinder	383-411	29	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	383-411	0	1.0
NC_010379_1	1.6\|383\|29\|NC_010379\|CRISPRCasFinder	383-411	29	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	129898-129926	0	1.0
NC_010379_1	1.8\|540\|42\|NC_010379\|CRISPRCasFinder	540-581	42	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	43755-43796	0	1.0
NC_010379_1	1.8\|540\|42\|NC_010379\|CRISPRCasFinder	540-581	42	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28028-28069	0	1.0
NC_010379_1	1.8\|540\|42\|NC_010379\|CRISPRCasFinder	540-581	42	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	540-581	0	1.0
NC_010379_1	1.9\|611\|37\|NC_010379\|CRISPRCasFinder	611-647	37	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	611-647	0	1.0
NC_010379_1	1.9\|611\|37\|NC_010379\|CRISPRCasFinder	611-647	37	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	44185-44221	0	1.0
NC_010379_1	1.9\|611\|37\|NC_010379\|CRISPRCasFinder	611-647	37	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	27962-27998	0	1.0
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	153772-153805	0	1.0
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	677-710	0	1.0
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	27899-27932	0	1.0
NC_010379_1	1.11\|740\|33\|NC_010379\|CRISPRCasFinder	740-772	33	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	70401-70433	0	1.0
NC_010379_1	1.11\|740\|33\|NC_010379\|CRISPRCasFinder	740-772	33	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	44251-44283	0	1.0
NC_010379_1	1.11\|740\|33\|NC_010379\|CRISPRCasFinder	740-772	33	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208952-208984	0	1.0
NC_010379_1	1.11\|740\|33\|NC_010379\|CRISPRCasFinder	740-772	33	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	740-772	0	1.0
NC_010379_1	1.11\|740\|33\|NC_010379\|CRISPRCasFinder	740-772	33	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	132124-132156	0	1.0
NC_010379_1	1.11\|740\|33\|NC_010379\|CRISPRCasFinder	740-772	33	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	131970-132002	0	1.0
NC_010379_1	1.12\|802\|36\|NC_010379\|CRISPRCasFinder	802-837	36	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	70336-70371	0	1.0
NC_010379_1	1.12\|802\|36\|NC_010379\|CRISPRCasFinder	802-837	36	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	209014-209049	0	1.0
NC_010379_1	1.12\|802\|36\|NC_010379\|CRISPRCasFinder	802-837	36	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	802-837	0	1.0
NC_010379_1	1.13\|57\|47\|NC_010379\|CRT	57-103	47	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71171-71217	0	1.0
NC_010379_1	1.13\|57\|47\|NC_010379\|CRT	57-103	47	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208168-208214	0	1.0
NC_010379_1	1.13\|57\|47\|NC_010379\|CRT	57-103	47	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	57-103	0	1.0
NC_010379_1	1.14\|123\|45\|NC_010379\|CRT	123-167	45	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	123-167	0	1.0
NC_010379_1	1.15\|187\|44\|NC_010379\|CRT	187-230	44	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71108-71151	0	1.0
NC_010379_1	1.15\|187\|44\|NC_010379\|CRT	187-230	44	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208234-208277	0	1.0
NC_010379_1	1.15\|187\|44\|NC_010379\|CRT	187-230	44	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	187-230	0	1.0
NC_010379_1	1.16\|250\|47\|NC_010379\|CRT	250-296	47	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	70854-70900	0	1.0
NC_010379_1	1.16\|250\|47\|NC_010379\|CRT	250-296	47	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208485-208531	0	1.0
NC_010379_1	1.16\|250\|47\|NC_010379\|CRT	250-296	47	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	250-296	0	1.0
NC_010379_1	1.16\|250\|47\|NC_010379\|CRT	250-296	47	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28380-28426	0	1.0
NC_010379_1	1.17\|316\|48\|NC_010379\|CRT	316-363	48	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	316-363	0	1.0
NC_010379_1	1.18\|383\|39\|NC_010379\|CRT	383-421	39	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208618-208656	0	1.0
NC_010379_1	1.18\|383\|39\|NC_010379\|CRT	383-421	39	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	383-421	0	1.0
NC_010379_1	1.18\|383\|39\|NC_010379\|CRT	383-421	39	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	129898-129936	0	1.0
NC_010379_1	1.18\|383\|39\|NC_010379\|CRT	383-421	39	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	70729-70767	0	1.0
NC_010379_1	1.18\|383\|39\|NC_010379\|CRT	383-421	39	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28188-28226	0	1.0
NC_010379_1	1.19\|540\|43\|NC_010379\|CRT	540-582	43	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	43754-43796	0	1.0
NC_010379_1	1.19\|540\|43\|NC_010379\|CRT	540-582	43	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	540-582	0	1.0
NC_010379_1	1.19\|540\|43\|NC_010379\|CRT	540-582	43	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28027-28069	0	1.0
NC_010379_1	1.20\|611\|38\|NC_010379\|CRT	611-648	38	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	611-648	0	1.0
NC_010379_1	1.20\|611\|38\|NC_010379\|CRT	611-648	38	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	44184-44221	0	1.0
NC_010379_1	1.20\|611\|38\|NC_010379\|CRT	611-648	38	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	27961-27998	0	1.0
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	153771-153805	0	1.0
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	677-711	0	1.0
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	27898-27932	0	1.0
NC_010379_1	1.22\|740\|34\|NC_010379\|CRT	740-773	34	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	70400-70433	0	1.0
NC_010379_1	1.22\|740\|34\|NC_010379\|CRT	740-773	34	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	44250-44283	0	1.0
NC_010379_1	1.22\|740\|34\|NC_010379\|CRT	740-773	34	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208952-208985	0	1.0
NC_010379_1	1.22\|740\|34\|NC_010379\|CRT	740-773	34	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	740-773	0	1.0
NC_010379_1	1.22\|740\|34\|NC_010379\|CRT	740-773	34	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	132124-132157	0	1.0
NC_010379_1	1.22\|740\|34\|NC_010379\|CRT	740-773	34	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	131970-132003	0	1.0
NC_010379_1	1.23\|802\|37\|NC_010379\|CRT	802-838	37	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	70335-70371	0	1.0
NC_010379_1	1.23\|802\|37\|NC_010379\|CRT	802-838	37	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	209014-209050	0	1.0
NC_010379_1	1.23\|802\|37\|NC_010379\|CRT	802-838	37	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	802-838	0	1.0
NC_010379_3	3.2\|57583\|39\|NC_010379\|CRISPRCasFinder	57583-57621	39	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	57583-57621	0	1.0
NC_010379_3	3.2\|57583\|39\|NC_010379\|CRISPRCasFinder	57583-57621	39	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	178142-178180	0	1.0
NC_010379_4	4.1\|147938\|36\|NC_010379\|CRISPRCasFinder	147938-147973	36	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	147938-147973	0	1.0
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71947-71982	0	1.0
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	207403-207438	0	1.0
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148003-148038	0	1.0
NC_010379_4	4.3\|148068\|36\|NC_010379\|CRISPRCasFinder	148068-148103	36	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71882-71917	0	1.0
NC_010379_4	4.3\|148068\|36\|NC_010379\|CRISPRCasFinder	148068-148103	36	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	44809-44844	0	1.0
NC_010379_4	4.3\|148068\|36\|NC_010379\|CRISPRCasFinder	148068-148103	36	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	207468-207503	0	1.0
NC_010379_4	4.3\|148068\|36\|NC_010379\|CRISPRCasFinder	148068-148103	36	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148068-148103	0	1.0
NC_010379_4	4.3\|148068\|36\|NC_010379\|CRISPRCasFinder	148068-148103	36	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	130641-130676	0	1.0
NC_010379_4	4.4\|148133\|35\|NC_010379\|CRISPRCasFinder	148133-148167	35	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71752-71786	0	1.0
NC_010379_4	4.4\|148133\|35\|NC_010379\|CRISPRCasFinder	148133-148167	35	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	207599-207633	0	1.0
NC_010379_4	4.4\|148133\|35\|NC_010379\|CRISPRCasFinder	148133-148167	35	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148133-148167	0	1.0
NC_010379_4	4.4\|148133\|35\|NC_010379\|CRISPRCasFinder	148133-148167	35	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	130384-130418	0	1.0
NC_010379_4	4.5\|148197\|35\|NC_010379\|CRISPRCasFinder	148197-148231	35	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	207663-207697	0	1.0
NC_010379_4	4.5\|148197\|35\|NC_010379\|CRISPRCasFinder	148197-148231	35	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148197-148231	0	1.0
NC_010379_4	4.5\|148197\|35\|NC_010379\|CRISPRCasFinder	148197-148231	35	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71688-71722	0	1.0
NC_010379_4	4.6\|148261\|36\|NC_010379\|CRISPRCasFinder	148261-148296	36	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148261-148296	0	1.0
NC_010379_4	4.7\|148326\|42\|NC_010379\|CRISPRCasFinder	148326-148367	42	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	207792-207833	0	1.0
NC_010379_4	4.7\|148326\|42\|NC_010379\|CRISPRCasFinder	148326-148367	42	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148326-148367	0	1.0
NC_010379_4	4.7\|148326\|42\|NC_010379\|CRISPRCasFinder	148326-148367	42	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	130570-130611	0	1.0
NC_010379_4	4.7\|148326\|42\|NC_010379\|CRISPRCasFinder	148326-148367	42	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71552-71593	0	1.0
NC_010379_4	4.7\|148326\|42\|NC_010379\|CRISPRCasFinder	148326-148367	42	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	29122-29163	0	1.0
NC_010379_4	4.8\|148397\|38\|NC_010379\|CRISPRCasFinder	148397-148434	38	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	207863-207900	0	1.0
NC_010379_4	4.8\|148397\|38\|NC_010379\|CRISPRCasFinder	148397-148434	38	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148397-148434	0	1.0
NC_010379_4	4.8\|148397\|38\|NC_010379\|CRISPRCasFinder	148397-148434	38	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71485-71522	0	1.0
NC_010379_4	4.8\|148397\|38\|NC_010379\|CRISPRCasFinder	148397-148434	38	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	155545-155582	0	1.0
NC_010379_4	4.8\|148397\|38\|NC_010379\|CRISPRCasFinder	148397-148434	38	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	29392-29429	0	1.0
NC_010379_4	4.9\|148464\|33\|NC_010379\|CRISPRCasFinder	148464-148496	33	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71423-71455	0	1.0
NC_010379_4	4.9\|148464\|33\|NC_010379\|CRISPRCasFinder	148464-148496	33	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	207930-207962	0	1.0
NC_010379_4	4.9\|148464\|33\|NC_010379\|CRISPRCasFinder	148464-148496	33	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148464-148496	0	1.0
NC_010379_4	4.10\|148526\|30\|NC_010379\|CRISPRCasFinder	148526-148555	30	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	207992-208021	0	1.0
NC_010379_4	4.10\|148526\|30\|NC_010379\|CRISPRCasFinder	148526-148555	30	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148526-148555	0	1.0
NC_010379_4	4.10\|148526\|30\|NC_010379\|CRISPRCasFinder	148526-148555	30	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71364-71393	0	1.0
NC_010379_4	4.11\|148585\|22\|NC_010379\|CRISPRCasFinder	148585-148606	22	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71313-71334	0	1.0
NC_010379_4	4.11\|148585\|22\|NC_010379\|CRISPRCasFinder	148585-148606	22	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	44077-44098	0	1.0
NC_010379_4	4.11\|148585\|22\|NC_010379\|CRISPRCasFinder	148585-148606	22	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	44939-44960	0	1.0
NC_010379_4	4.11\|148585\|22\|NC_010379\|CRISPRCasFinder	148585-148606	22	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	29071-29092	0	1.0
NC_010379_4	4.11\|148585\|22\|NC_010379\|CRISPRCasFinder	148585-148606	22	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208051-208072	0	1.0
NC_010379_4	4.11\|148585\|22\|NC_010379\|CRISPRCasFinder	148585-148606	22	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148585-148606	0	1.0
NC_010379_4	4.11\|148585\|22\|NC_010379\|CRISPRCasFinder	148585-148606	22	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	131702-131723	0	1.0
NC_010379_4	4.11\|148585\|22\|NC_010379\|CRISPRCasFinder	148585-148606	22	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	131555-131576	0	1.0
NC_010379_4	4.12\|148636\|41\|NC_010379\|CRISPRCasFinder	148636-148676	41	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148636-148676	0	1.0
NC_010379_4	4.13\|148706\|36\|NC_010379\|CRISPRCasFinder	148706-148741	36	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148706-148741	0	1.0
NC_010379_1	1.2\|123\|35\|NC_010379\|CRISPRCasFinder	123-157	35	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	132352-132386	1	0.971
NC_010379_1	1.3\|187\|34\|NC_010379\|CRISPRCasFinder	187-220	34	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28637-28670	1	0.971
NC_010379_1	1.4\|250\|37\|NC_010379\|CRISPRCasFinder	250-286	37	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	43892-43928	1	0.973
NC_010379_1	1.4\|250\|37\|NC_010379\|CRISPRCasFinder	250-286	37	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	154951-154987	1	0.973
NC_010379_1	1.5\|316\|38\|NC_010379\|CRISPRCasFinder	316-353	38	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	70797-70834	1	0.974
NC_010379_1	1.5\|316\|38\|NC_010379\|CRISPRCasFinder	316-353	38	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28256-28293	1	0.974
NC_010379_1	1.5\|316\|38\|NC_010379\|CRISPRCasFinder	316-353	38	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208551-208588	1	0.974
NC_010379_1	1.8\|540\|42\|NC_010379\|CRISPRCasFinder	540-581	42	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	130054-130095	1	0.976
NC_010379_1	1.9\|611\|37\|NC_010379\|CRISPRCasFinder	611-647	37	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	153835-153871	1	0.973
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	45054-45087	1	0.971
NC_010379_1	1.12\|802\|36\|NC_010379\|CRISPRCasFinder	802-837	36	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	131232-131267	1	0.972
NC_010379_1	1.15\|187\|44\|NC_010379\|CRT	187-230	44	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28627-28670	1	0.977
NC_010379_1	1.17\|316\|48\|NC_010379\|CRT	316-363	48	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	70787-70834	1	0.979
NC_010379_1	1.17\|316\|48\|NC_010379\|CRT	316-363	48	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208551-208598	1	0.979
NC_010379_1	1.17\|316\|48\|NC_010379\|CRT	316-363	48	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28246-28293	1	0.979
NC_010379_1	1.20\|611\|38\|NC_010379\|CRT	611-648	38	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	153834-153871	1	0.974
NC_010379_1	1.23\|802\|37\|NC_010379\|CRT	802-838	37	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	131232-131268	1	0.973
NC_010379_3	3.2\|57583\|39\|NC_010379\|CRISPRCasFinder	57583-57621	39	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	2139-2177	1	0.974
NC_010379_3	3.2\|57583\|39\|NC_010379\|CRISPRCasFinder	57583-57621	39	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	193851-193889	1	0.974
NC_010379_3	3.2\|57583\|39\|NC_010379\|CRISPRCasFinder	57583-57621	39	NC_012654	Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence	135045-135083	1	0.974
NC_010379_3	3.2\|57583\|39\|NC_010379\|CRISPRCasFinder	57583-57621	39	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	32424-32462	1	0.974
NC_010379_3	3.2\|57583\|39\|NC_010379\|CRISPRCasFinder	57583-57621	39	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	106601-106639	1	0.974
NC_010379_3	3.2\|57583\|39\|NC_010379\|CRISPRCasFinder	57583-57621	39	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	247631-247669	1	0.974
NC_010379_3	3.2\|57583\|39\|NC_010379\|CRISPRCasFinder	57583-57621	39	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	228353-228391	1	0.974
NC_010379_3	3.2\|57583\|39\|NC_010379\|CRISPRCasFinder	57583-57621	39	NZ_CP031095	Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence	247100-247138	1	0.974
NC_010379_4	4.1\|147938\|36\|NC_010379\|CRISPRCasFinder	147938-147973	36	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	155678-155713	1	0.972
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	155612-155647	1	0.972
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	29459-29494	1	0.972
NC_010379_4	4.6\|148261\|36\|NC_010379\|CRISPRCasFinder	148261-148296	36	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	71623-71658	1	0.972
NC_010379_4	4.6\|148261\|36\|NC_010379\|CRISPRCasFinder	148261-148296	36	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	207727-207762	1	0.972
NC_010379_4	4.9\|148464\|33\|NC_010379\|CRISPRCasFinder	148464-148496	33	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	155077-155109	1	0.97
NC_010379_4	4.9\|148464\|33\|NC_010379\|CRISPRCasFinder	148464-148496	33	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	43572-43604	1	0.97
NC_010379_4	4.9\|148464\|33\|NC_010379\|CRISPRCasFinder	148464-148496	33	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	130448-130480	1	0.97
NC_010379_4	4.11\|148585\|22\|NC_010379\|CRISPRCasFinder	148585-148606	22	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	130266-130287	1	0.955
NC_010379_4	4.11\|148585\|22\|NC_010379\|CRISPRCasFinder	148585-148606	22	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	154462-154483	1	0.955
NC_010379_4	4.13\|148706\|36\|NC_010379\|CRISPRCasFinder	148706-148741	36	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	43507-43542	1	0.972
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	130139-130172	2	0.941
NC_010379_1	1.11\|740\|33\|NC_010379\|CRISPRCasFinder	740-772	33	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	27463-27495	2	0.939
NC_010379_1	1.19\|540\|43\|NC_010379\|CRT	540-582	43	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	130054-130096	2	0.953
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	45053-45087	2	0.943
NC_010379_1	1.22\|740\|34\|NC_010379\|CRT	740-773	34	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	27462-27495	2	0.941
NC_010379_4	4.5\|148197\|35\|NC_010379\|CRISPRCasFinder	148197-148231	35	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	132352-132386	2	0.943
NC_010379_4	4.6\|148261\|36\|NC_010379\|CRISPRCasFinder	148261-148296	36	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	133046-133081	2	0.944
NC_010379_4	4.8\|148397\|38\|NC_010379\|CRISPRCasFinder	148397-148434	38	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	43634-43671	2	0.947
NC_010379_1	1.14\|123\|45\|NC_010379\|CRT	123-167	45	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	132352-132396	3	0.933
NC_010379_1	1.16\|250\|47\|NC_010379\|CRT	250-296	47	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	43882-43928	3	0.936
NC_010379_1	1.16\|250\|47\|NC_010379\|CRT	250-296	47	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	154941-154987	3	0.936
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	130139-130173	3	0.914
NC_010379_4	4.9\|148464\|33\|NC_010379\|CRISPRCasFinder	148464-148496	33	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	131752-131784	3	0.909
NC_010379_2	2.1\|57161\|64\|NC_010379\|CRISPRCasFinder	57161-57224	64	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	57161-57224	4	0.938
NC_010379_2	2.1\|57161\|64\|NC_010379\|CRISPRCasFinder	57161-57224	64	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	177720-177783	4	0.938
NC_010379_3	3.1\|57488\|64\|NC_010379\|CRISPRCasFinder	57488-57551	64	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	57488-57551	4	0.938
NC_010379_3	3.1\|57488\|64\|NC_010379\|CRISPRCasFinder	57488-57551	64	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	178047-178110	4	0.938
NC_010379_4	4.7\|148326\|42\|NC_010379\|CRISPRCasFinder	148326-148367	42	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	27204-27245	4	0.905
NC_010379_3	3.1\|57488\|64\|NC_010379\|CRISPRCasFinder	57488-57551	64	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	32494-32557	5	0.922
NC_010379_3	3.1\|57488\|64\|NC_010379\|CRISPRCasFinder	57488-57551	64	NZ_CP006909	Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence	106671-106734	5	0.922
NC_010379_3	3.1\|57488\|64\|NC_010379\|CRISPRCasFinder	57488-57551	64	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	2044-2107	5	0.922
NC_010379_3	3.1\|57488\|64\|NC_010379\|CRISPRCasFinder	57488-57551	64	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	193756-193819	5	0.922
NC_010379_3	3.1\|57488\|64\|NC_010379\|CRISPRCasFinder	57488-57551	64	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	228423-228486	5	0.922
NC_010379_3	3.1\|57488\|64\|NC_010379\|CRISPRCasFinder	57488-57551	64	NC_012654	Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence	134950-135013	5	0.922
NC_010379_3	3.1\|57488\|64\|NC_010379\|CRISPRCasFinder	57488-57551	64	NZ_CP031095	Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence	247170-247233	5	0.922
NC_010379_1	1.3\|187\|34\|NC_010379\|CRISPRCasFinder	187-220	34	NZ_CP043485	Enterococcus faecium strain DMEA02 plasmid pDMEA1, complete sequence	42470-42503	6	0.824
NC_010379_1	1.5\|316\|38\|NC_010379\|CRISPRCasFinder	316-353	38	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	131843-131880	6	0.842
NC_010379_1	1.6\|383\|29\|NC_010379\|CRISPRCasFinder	383-411	29	NZ_CP042825	Rhizobium sp. WL3 plasmid unnamed2, complete sequence	132974-133002	6	0.793
NC_010379_3	3.1\|57488\|64\|NC_010379\|CRISPRCasFinder	57488-57551	64	NZ_CP013684	Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence	247701-247764	6	0.906
NC_010379_1	1.6\|383\|29\|NC_010379\|CRISPRCasFinder	383-411	29	NC_014502	Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence	72110-72138	7	0.759
NC_010379_1	1.1\|57\|37\|NC_010379\|CRISPRCasFinder	57-93	37	NC_018265	Melissococcus plutonius DAT561 plasmid 1, complete sequence	22862-22898	8	0.784
NC_010379_1	1.6\|383\|29\|NC_010379\|CRISPRCasFinder	383-411	29	MK448509	Streptococcus satellite phage Javan468, complete genome	8964-8992	8	0.724
NC_010379_1	1.6\|383\|29\|NC_010379\|CRISPRCasFinder	383-411	29	NZ_CP023967	Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence	7967-7995	8	0.724
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_CP018750	Borreliella garinii strain CIP 103362 isolate 20047 plasmid cp26, complete sequence	12757-12790	8	0.765
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NC_018983	Borrelia burgdorferi 297 plasmid 297_cp26, complete sequence	9160-9193	8	0.765
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NC_017395	Borreliella burgdorferi JD1 plasmid JD1 cp26, complete sequence	9165-9198	8	0.765
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_CP028867	Borreliella garinii strain 20047 plasmid cp26, complete sequence	13019-13052	8	0.765
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_CP015797	Borrelia mayonii strain MN14-1539 plasmid cp26, complete sequence	9103-9136	8	0.765
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_CP015781	Borrelia mayonii strain MN14-1420 plasmid cp26, complete sequence	9103-9136	8	0.765
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NC_017725	Borreliella garinii BgVir plasmid cp26, complete sequence	9030-9063	8	0.765
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_CP025502	Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence	61523-61556	8	0.765
NC_010379_1	1.11\|740\|33\|NC_010379\|CRISPRCasFinder	740-772	33	MN693772	Marine virus AFVG_250M408, complete genome	37927-37959	8	0.758
NC_010379_4	4.7\|148326\|42\|NC_010379\|CRISPRCasFinder	148326-148367	42	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28319-28360	8	0.81
NC_010379_4	4.10\|148526\|30\|NC_010379\|CRISPRCasFinder	148526-148555	30	NZ_AP019719	Clostridium butyricum strain NBRC 13949 plasmid pCBU3, complete sequence	897-926	8	0.733
NC_010379_1	1.6\|383\|29\|NC_010379\|CRISPRCasFinder	383-411	29	MK295204	Shigella phage vB_SdyM_006, complete genome	66089-66117	9	0.69
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_CP020479	Campylobacter helveticus strain ATCC 51209 plasmid pHELV-1, complete sequence	415-448	9	0.735
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_CP020479	Campylobacter helveticus strain ATCC 51209 plasmid pHELV-1, complete sequence	71572-71605	9	0.735
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NC_015386	Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence	82968-83001	9	0.735
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	MN694510	Marine virus AFVG_250M493, complete genome	28238-28271	9	0.735
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_CP018750	Borreliella garinii strain CIP 103362 isolate 20047 plasmid cp26, complete sequence	12756-12790	9	0.743
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NC_018983	Borrelia burgdorferi 297 plasmid 297_cp26, complete sequence	9159-9193	9	0.743
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NC_017395	Borreliella burgdorferi JD1 plasmid JD1 cp26, complete sequence	9164-9198	9	0.743
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_CP028867	Borreliella garinii strain 20047 plasmid cp26, complete sequence	13019-13053	9	0.743
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_CP015797	Borrelia mayonii strain MN14-1539 plasmid cp26, complete sequence	9102-9136	9	0.743
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_CP015781	Borrelia mayonii strain MN14-1420 plasmid cp26, complete sequence	9102-9136	9	0.743
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NC_017725	Borreliella garinii BgVir plasmid cp26, complete sequence	9029-9063	9	0.743
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_CP025502	Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence	61523-61557	9	0.743
NC_010379_1	1.22\|740\|34\|NC_010379\|CRT	740-773	34	MN693772	Marine virus AFVG_250M408, complete genome	37927-37960	9	0.735
NC_010379_4	4.6\|148261\|36\|NC_010379\|CRISPRCasFinder	148261-148296	36	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	632879-632914	9	0.75
NC_010379_4	4.6\|148261\|36\|NC_010379\|CRISPRCasFinder	148261-148296	36	NZ_AP019717	Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence	671295-671330	9	0.75
NC_010379_4	4.8\|148397\|38\|NC_010379\|CRISPRCasFinder	148397-148434	38	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	148639-148676	9	0.763
NC_010379_1	1.1\|57\|37\|NC_010379\|CRISPRCasFinder	57-93	37	NZ_CP014173	Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence	33621-33657	10	0.73
NC_010379_1	1.7\|441\|70\|NC_010379\|CRISPRCasFinder	441-510	70	NZ_CP014152	Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence	70640-70709	10	0.857
NC_010379_1	1.7\|441\|70\|NC_010379\|CRISPRCasFinder	441-510	70	NZ_CP013710	Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence	208676-208745	10	0.857
NC_010379_1	1.7\|441\|70\|NC_010379\|CRISPRCasFinder	441-510	70	NC_010379	Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence	441-510	10	0.857
NC_010379_1	1.7\|441\|70\|NC_010379\|CRISPRCasFinder	441-510	70	NC_025146	Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111	28099-28168	10	0.857
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_KY595969	Enterococcus faecium strain VREfm87 plasmid pMIS005, complete sequence	1466-1499	10	0.706
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_LR135249	Enterococcus faecium isolate E6988 plasmid 7	8817-8850	10	0.706
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_LR135240	Enterococcus faecium isolate E7067 plasmid 6	8817-8850	10	0.706
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_CP013332	Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence	36921-36954	10	0.706
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_LR135224	Enterococcus faecium isolate E7040 plasmid 6	10708-10741	10	0.706
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_LR135349	Enterococcus faecium isolate E8202 plasmid 6	2599-2632	10	0.706
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_LR135361	Enterococcus faecium isolate E7948 plasmid 5	3226-3259	10	0.706
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	NZ_CP044278	Enterococcus faecium strain V2937 plasmid pHVH-V2937-4, complete sequence	4153-4186	10	0.706
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	MN694586	Marine virus AFVG_250M370, complete genome	13304-13337	10	0.706
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_CP013332	Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence	36920-36954	10	0.714
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	NZ_CP004876	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence	200621-200656	10	0.722
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	NC_017203	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence	232890-232925	10	0.722
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	NC_020384	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence	237118-237153	10	0.722
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	647667-647702	10	0.722
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	NZ_CP004861	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence	198057-198092	10	0.722
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	NZ_CP010091	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence	212250-212285	10	0.722
NC_010379_4	4.2\|148003\|36\|NC_010379\|CRISPRCasFinder	148003-148038	36	JN638751	Bacillus phage G, complete genome	45881-45916	10	0.722
NC_010379_4	4.4\|148133\|35\|NC_010379\|CRISPRCasFinder	148133-148167	35	AP012536	Stx2-converting phage Stx2a_1447 proviral DNA, complete genome	55736-55770	10	0.714
NC_010379_4	4.4\|148133\|35\|NC_010379\|CRISPRCasFinder	148133-148167	35	NC_049941	Stx2-converting phage Stx2a_WGPS2 proviral DNA, complete genome	57049-57083	10	0.714
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_KY595969	Enterococcus faecium strain VREfm87 plasmid pMIS005, complete sequence	1466-1500	11	0.686
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_LR135249	Enterococcus faecium isolate E6988 plasmid 7	8816-8850	11	0.686
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_LR135240	Enterococcus faecium isolate E7067 plasmid 6	8816-8850	11	0.686
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_LR135224	Enterococcus faecium isolate E7040 plasmid 6	10707-10741	11	0.686
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_LR135349	Enterococcus faecium isolate E8202 plasmid 6	2598-2632	11	0.686
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_LR135361	Enterococcus faecium isolate E7948 plasmid 5	3225-3259	11	0.686
NC_010379_1	1.21\|677\|35\|NC_010379\|CRT	677-711	35	NZ_CP044278	Enterococcus faecium strain V2937 plasmid pHVH-V2937-4, complete sequence	4152-4186	11	0.686
NC_010379_1	1.10\|677\|34\|NC_010379\|CRISPRCasFinder	677-710	34	MH598806	Pelagibacter phage HTVC119P, complete genome	2546-2579	14	0.588
NC_010379_4	4.6\|148261\|36\|NC_010379\|CRISPRCasFinder	148261-148296	36	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	59694-59729	15	0.583

1. spacer 1.1|57|37|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcattgaaagcataaaaaataaactagaaaaatataa	CRISPR spacer
gcattgaaagcataaaaaataaactagaaaaatataa	Protospacer
*************************************

2. spacer 1.1|57|37|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

gcattgaaagcataaaaaataaactagaaaaatataa	CRISPR spacer
gcattgaaagcataaaaaataaactagaaaaatataa	Protospacer
*************************************

3. spacer 1.1|57|37|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

gcattgaaagcataaaaaataaactagaaaaatataa	CRISPR spacer
gcattgaaagcataaaaaataaactagaaaaatataa	Protospacer
*************************************

4. spacer 1.2|123|35|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

gtttaaagattataagttaaggatatgtttttaat	CRISPR spacer
gtttaaagattataagttaaggatatgtttttaat	Protospacer
***********************************

5. spacer 1.3|187|34|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

ctattgattgacaaaaatttttagttttatttaa	CRISPR spacer
ctattgattgacaaaaatttttagttttatttaa	Protospacer
**********************************

6. spacer 1.3|187|34|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

ctattgattgacaaaaatttttagttttatttaa	CRISPR spacer
ctattgattgacaaaaatttttagttttatttaa	Protospacer
**********************************

7. spacer 1.3|187|34|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

ctattgattgacaaaaatttttagttttatttaa	CRISPR spacer
ctattgattgacaaaaatttttagttttatttaa	Protospacer
**********************************

8. spacer 1.4|250|37|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

cggaggtttttgtaatgctaaatcctataaaaaacaa	CRISPR spacer
cggaggtttttgtaatgctaaatcctataaaaaacaa	Protospacer
*************************************

9. spacer 1.4|250|37|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

cggaggtttttgtaatgctaaatcctataaaaaacaa	CRISPR spacer
cggaggtttttgtaatgctaaatcctataaaaaacaa	Protospacer
*************************************

10. spacer 1.4|250|37|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

cggaggtttttgtaatgctaaatcctataaaaaacaa	CRISPR spacer
cggaggtttttgtaatgctaaatcctataaaaaacaa	Protospacer
*************************************

11. spacer 1.4|250|37|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

cggaggtttttgtaatgctaaatcctataaaaaacaa	CRISPR spacer
cggaggtttttgtaatgctaaatcctataaaaaacaa	Protospacer
*************************************

12. spacer 1.5|316|38|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaataaggaacctactaattttttattgttattaaa	CRISPR spacer
ctaaataaggaacctactaattttttattgttattaaa	Protospacer
**************************************

13. spacer 1.6|383|29|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

ccctccatttctaaactataattaattat	CRISPR spacer
ccctccatttctaaactataattaattat	Protospacer
*****************************

14. spacer 1.6|383|29|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

ccctccatttctaaactataattaattat	CRISPR spacer
ccctccatttctaaactataattaattat	Protospacer
*****************************

15. spacer 1.6|383|29|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

ccctccatttctaaactataattaattat	CRISPR spacer
ccctccatttctaaactataattaattat	Protospacer
*****************************

16. spacer 1.6|383|29|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

ccctccatttctaaactataattaattat	CRISPR spacer
ccctccatttctaaactataattaattat	Protospacer
*****************************

17. spacer 1.6|383|29|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 0, identity: 1.0

ccctccatttctaaactataattaattat	CRISPR spacer
ccctccatttctaaactataattaattat	Protospacer
*****************************

18. spacer 1.8|540|42|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

attccgtttttttaaaataggaaatttttaataaaaaaagac	CRISPR spacer
attccgtttttttaaaataggaaatttttaataaaaaaagac	Protospacer
******************************************

19. spacer 1.8|540|42|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

attccgtttttttaaaataggaaatttttaataaaaaaagac	CRISPR spacer
attccgtttttttaaaataggaaatttttaataaaaaaagac	Protospacer
******************************************

20. spacer 1.8|540|42|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

attccgtttttttaaaataggaaatttttaataaaaaaagac	CRISPR spacer
attccgtttttttaaaataggaaatttttaataaaaaaagac	Protospacer
******************************************

21. spacer 1.9|611|37|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

cacgcatatttgaaatatggaaaatggagtaagatgg	CRISPR spacer
cacgcatatttgaaatatggaaaatggagtaagatgg	Protospacer
*************************************

22. spacer 1.9|611|37|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

cacgcatatttgaaatatggaaaatggagtaagatgg	CRISPR spacer
cacgcatatttgaaatatggaaaatggagtaagatgg	Protospacer
*************************************

23. spacer 1.9|611|37|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

cacgcatatttgaaatatggaaaatggagtaagatgg	CRISPR spacer
cacgcatatttgaaatatggaaaatggagtaagatgg	Protospacer
*************************************

24. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 0, identity: 1.0

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
ctaccgatttataaaaatttttagttttatttaa	Protospacer
**********************************

25. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
ctaccgatttataaaaatttttagttttatttaa	Protospacer
**********************************

26. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
ctaccgatttataaaaatttttagttttatttaa	Protospacer
**********************************

27. spacer 1.11|740|33|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttg	Protospacer
*********************************

28. spacer 1.11|740|33|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttg	Protospacer
*********************************

29. spacer 1.11|740|33|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttg	Protospacer
*********************************

30. spacer 1.11|740|33|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttg	Protospacer
*********************************

31. spacer 1.11|740|33|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttg	Protospacer
*********************************

32. spacer 1.11|740|33|NC_010379|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttg	Protospacer
*********************************

33. spacer 1.12|802|36|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

cgttgtaaaatatgtaggtggagctaaggagtgtaa	CRISPR spacer
cgttgtaaaatatgtaggtggagctaaggagtgtaa	Protospacer
************************************

34. spacer 1.12|802|36|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

cgttgtaaaatatgtaggtggagctaaggagtgtaa	CRISPR spacer
cgttgtaaaatatgtaggtggagctaaggagtgtaa	Protospacer
************************************

35. spacer 1.12|802|36|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

cgttgtaaaatatgtaggtggagctaaggagtgtaa	CRISPR spacer
cgttgtaaaatatgtaggtggagctaaggagtgtaa	Protospacer
************************************

36. spacer 1.13|57|47|NC_010379|CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcattgaaagcataaaaaataaactagaaaaatataagtttaacttg	CRISPR spacer
gcattgaaagcataaaaaataaactagaaaaatataagtttaacttg	Protospacer
***********************************************

37. spacer 1.13|57|47|NC_010379|CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

gcattgaaagcataaaaaataaactagaaaaatataagtttaacttg	CRISPR spacer
gcattgaaagcataaaaaataaactagaaaaatataagtttaacttg	Protospacer
***********************************************

38. spacer 1.13|57|47|NC_010379|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

gcattgaaagcataaaaaataaactagaaaaatataagtttaacttg	CRISPR spacer
gcattgaaagcataaaaaataaactagaaaaatataagtttaacttg	Protospacer
***********************************************

39. spacer 1.14|123|45|NC_010379|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

gtttaaagattataagttaaggatatgtttttaatgcttaacttt	CRISPR spacer
gtttaaagattataagttaaggatatgtttttaatgcttaacttt	Protospacer
*********************************************

40. spacer 1.15|187|44|NC_010379|CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

ctattgattgacaaaaatttttagttttatttaagcttaacttt	CRISPR spacer
ctattgattgacaaaaatttttagttttatttaagcttaacttt	Protospacer
********************************************

41. spacer 1.15|187|44|NC_010379|CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

ctattgattgacaaaaatttttagttttatttaagcttaacttt	CRISPR spacer
ctattgattgacaaaaatttttagttttatttaagcttaacttt	Protospacer
********************************************

42. spacer 1.15|187|44|NC_010379|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

ctattgattgacaaaaatttttagttttatttaagcttaacttt	CRISPR spacer
ctattgattgacaaaaatttttagttttatttaagcttaacttt	Protospacer
********************************************

43. spacer 1.16|250|47|NC_010379|CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

cggaggtttttgtaatgctaaatcctataaaaaacaagtttaatttg	CRISPR spacer
cggaggtttttgtaatgctaaatcctataaaaaacaagtttaatttg	Protospacer
***********************************************

44. spacer 1.16|250|47|NC_010379|CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

cggaggtttttgtaatgctaaatcctataaaaaacaagtttaatttg	CRISPR spacer
cggaggtttttgtaatgctaaatcctataaaaaacaagtttaatttg	Protospacer
***********************************************

45. spacer 1.16|250|47|NC_010379|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

cggaggtttttgtaatgctaaatcctataaaaaacaagtttaatttg	CRISPR spacer
cggaggtttttgtaatgctaaatcctataaaaaacaagtttaatttg	Protospacer
***********************************************

46. spacer 1.16|250|47|NC_010379|CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

cggaggtttttgtaatgctaaatcctataaaaaacaagtttaatttg	CRISPR spacer
cggaggtttttgtaatgctaaatcctataaaaaacaagtttaatttg	Protospacer
***********************************************

47. spacer 1.17|316|48|NC_010379|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

ctaaataaggaacctactaattttttattgttattaaagtttaactta	CRISPR spacer
ctaaataaggaacctactaattttttattgttattaaagtttaactta	Protospacer
************************************************

48. spacer 1.18|383|39|NC_010379|CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

ccctccatttctaaactataattaattatgcttaacttt	CRISPR spacer
ccctccatttctaaactataattaattatgcttaacttt	Protospacer
***************************************

49. spacer 1.18|383|39|NC_010379|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

ccctccatttctaaactataattaattatgcttaacttt	CRISPR spacer
ccctccatttctaaactataattaattatgcttaacttt	Protospacer
***************************************

50. spacer 1.18|383|39|NC_010379|CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 0, identity: 1.0

ccctccatttctaaactataattaattatgcttaacttt	CRISPR spacer
ccctccatttctaaactataattaattatgcttaacttt	Protospacer
***************************************

51. spacer 1.18|383|39|NC_010379|CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

ccctccatttctaaactataattaattatgcttaacttt	CRISPR spacer
ccctccatttctaaactataattaattatgcttaacttt	Protospacer
***************************************

52. spacer 1.18|383|39|NC_010379|CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

ccctccatttctaaactataattaattatgcttaacttt	CRISPR spacer
ccctccatttctaaactataattaattatgcttaacttt	Protospacer
***************************************

53. spacer 1.19|540|43|NC_010379|CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

attccgtttttttaaaataggaaatttttaataaaaaaagact	CRISPR spacer
attccgtttttttaaaataggaaatttttaataaaaaaagact	Protospacer
*******************************************

54. spacer 1.19|540|43|NC_010379|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

attccgtttttttaaaataggaaatttttaataaaaaaagact	CRISPR spacer
attccgtttttttaaaataggaaatttttaataaaaaaagact	Protospacer
*******************************************

55. spacer 1.19|540|43|NC_010379|CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

attccgtttttttaaaataggaaatttttaataaaaaaagact	CRISPR spacer
attccgtttttttaaaataggaaatttttaataaaaaaagact	Protospacer
*******************************************

56. spacer 1.20|611|38|NC_010379|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

cacgcatatttgaaatatggaaaatggagtaagatgga	CRISPR spacer
cacgcatatttgaaatatggaaaatggagtaagatgga	Protospacer
**************************************

57. spacer 1.20|611|38|NC_010379|CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

cacgcatatttgaaatatggaaaatggagtaagatgga	CRISPR spacer
cacgcatatttgaaatatggaaaatggagtaagatgga	Protospacer
**************************************

58. spacer 1.20|611|38|NC_010379|CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

cacgcatatttgaaatatggaaaatggagtaagatgga	CRISPR spacer
cacgcatatttgaaatatggaaaatggagtaagatgga	Protospacer
**************************************

59. spacer 1.21|677|35|NC_010379|CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 0, identity: 1.0

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
ctaccgatttataaaaatttttagttttatttaag	Protospacer
***********************************

60. spacer 1.21|677|35|NC_010379|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
ctaccgatttataaaaatttttagttttatttaag	Protospacer
***********************************

61. spacer 1.21|677|35|NC_010379|CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
ctaccgatttataaaaatttttagttttatttaag	Protospacer
***********************************

62. spacer 1.22|740|34|NC_010379|CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttgg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttgg	Protospacer
**********************************

63. spacer 1.22|740|34|NC_010379|CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttgg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttgg	Protospacer
**********************************

64. spacer 1.22|740|34|NC_010379|CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttgg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttgg	Protospacer
**********************************

65. spacer 1.22|740|34|NC_010379|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttgg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttgg	Protospacer
**********************************

66. spacer 1.22|740|34|NC_010379|CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttgg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttgg	Protospacer
**********************************

67. spacer 1.22|740|34|NC_010379|CRT matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 0, identity: 1.0

aactttcagaaggcatattttcttaaatatttgg	CRISPR spacer
aactttcagaaggcatattttcttaaatatttgg	Protospacer
**********************************

68. spacer 1.23|802|37|NC_010379|CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

cgttgtaaaatatgtaggtggagctaaggagtgtaag	CRISPR spacer
cgttgtaaaatatgtaggtggagctaaggagtgtaag	Protospacer
*************************************

69. spacer 1.23|802|37|NC_010379|CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

cgttgtaaaatatgtaggtggagctaaggagtgtaag	CRISPR spacer
cgttgtaaaatatgtaggtggagctaaggagtgtaag	Protospacer
*************************************

70. spacer 1.23|802|37|NC_010379|CRT matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

cgttgtaaaatatgtaggtggagctaaggagtgtaag	CRISPR spacer
cgttgtaaaatatgtaggtggagctaaggagtgtaag	Protospacer
*************************************

71. spacer 3.2|57583|39|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

tttataatattaggttgttgtatttactttatttgttca	CRISPR spacer
tttataatattaggttgttgtatttactttatttgttca	Protospacer
***************************************

72. spacer 3.2|57583|39|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 0, identity: 1.0

tttataatattaggttgttgtatttactttatttgttca	CRISPR spacer
tttataatattaggttgttgtatttactttatttgttca	Protospacer
***************************************

73. spacer 4.1|147938|36|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

tgtaaagaacagaaaaaggtaattaaaaaattaaat	CRISPR spacer
tgtaaagaacagaaaaaggtaattaaaaaattaaat	Protospacer
************************************

74. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
cataataatctttataaaaagaaataaaaaggaata	Protospacer
************************************

75. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
cataataatctttataaaaagaaataaaaaggaata	Protospacer
************************************

76. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
cataataatctttataaaaagaaataaaaaggaata	Protospacer
************************************

77. spacer 4.3|148068|36|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

caattaatttgttctctcatttgtaaatatacatat	CRISPR spacer
caattaatttgttctctcatttgtaaatatacatat	Protospacer
************************************

78. spacer 4.3|148068|36|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

caattaatttgttctctcatttgtaaatatacatat	CRISPR spacer
caattaatttgttctctcatttgtaaatatacatat	Protospacer
************************************

79. spacer 4.3|148068|36|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

caattaatttgttctctcatttgtaaatatacatat	CRISPR spacer
caattaatttgttctctcatttgtaaatatacatat	Protospacer
************************************

80. spacer 4.3|148068|36|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

caattaatttgttctctcatttgtaaatatacatat	CRISPR spacer
caattaatttgttctctcatttgtaaatatacatat	Protospacer
************************************

81. spacer 4.3|148068|36|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 0, identity: 1.0

caattaatttgttctctcatttgtaaatatacatat	CRISPR spacer
caattaatttgttctctcatttgtaaatatacatat	Protospacer
************************************

82. spacer 4.4|148133|35|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

caaaatcggaggctttttaataatatttttaataa	CRISPR spacer
caaaatcggaggctttttaataatatttttaataa	Protospacer
***********************************

83. spacer 4.4|148133|35|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

caaaatcggaggctttttaataatatttttaataa	CRISPR spacer
caaaatcggaggctttttaataatatttttaataa	Protospacer
***********************************

84. spacer 4.4|148133|35|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

caaaatcggaggctttttaataatatttttaataa	CRISPR spacer
caaaatcggaggctttttaataatatttttaataa	Protospacer
***********************************

85. spacer 4.4|148133|35|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 0, identity: 1.0

caaaatcggaggctttttaataatatttttaataa	CRISPR spacer
caaaatcggaggctttttaataatatttttaataa	Protospacer
***********************************

86. spacer 4.5|148197|35|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

gttttaaaattataagttaaggatatggttttaat	CRISPR spacer
gttttaaaattataagttaaggatatggttttaat	Protospacer
***********************************

87. spacer 4.5|148197|35|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

gttttaaaattataagttaaggatatggttttaat	CRISPR spacer
gttttaaaattataagttaaggatatggttttaat	Protospacer
***********************************

88. spacer 4.5|148197|35|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

gttttaaaattataagttaaggatatggttttaat	CRISPR spacer
gttttaaaattataagttaaggatatggttttaat	Protospacer
***********************************

89. spacer 4.6|148261|36|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

cattatatatatatctttaaaaatatttttctcatt	CRISPR spacer
cattatatatatatctttaaaaatatttttctcatt	Protospacer
************************************

90. spacer 4.7|148326|42|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

ctaccgaaaaacacaaaaaagatataagaatttttcctatat	CRISPR spacer
ctaccgaaaaacacaaaaaagatataagaatttttcctatat	Protospacer
******************************************

91. spacer 4.7|148326|42|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

ctaccgaaaaacacaaaaaagatataagaatttttcctatat	CRISPR spacer
ctaccgaaaaacacaaaaaagatataagaatttttcctatat	Protospacer
******************************************

92. spacer 4.7|148326|42|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 0, identity: 1.0

ctaccgaaaaacacaaaaaagatataagaatttttcctatat	CRISPR spacer
ctaccgaaaaacacaaaaaagatataagaatttttcctatat	Protospacer
******************************************

93. spacer 4.7|148326|42|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

ctaccgaaaaacacaaaaaagatataagaatttttcctatat	CRISPR spacer
ctaccgaaaaacacaaaaaagatataagaatttttcctatat	Protospacer
******************************************

94. spacer 4.7|148326|42|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

ctaccgaaaaacacaaaaaagatataagaatttttcctatat	CRISPR spacer
ctaccgaaaaacacaaaaaagatataagaatttttcctatat	Protospacer
******************************************

95. spacer 4.8|148397|38|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

caacaggaaatggaggttttgcaaatgcatagatataa	CRISPR spacer
caacaggaaatggaggttttgcaaatgcatagatataa	Protospacer
**************************************

96. spacer 4.8|148397|38|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

caacaggaaatggaggttttgcaaatgcatagatataa	CRISPR spacer
caacaggaaatggaggttttgcaaatgcatagatataa	Protospacer
**************************************

97. spacer 4.8|148397|38|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

caacaggaaatggaggttttgcaaatgcatagatataa	CRISPR spacer
caacaggaaatggaggttttgcaaatgcatagatataa	Protospacer
**************************************

98. spacer 4.8|148397|38|NC_010379|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 0, identity: 1.0

caacaggaaatggaggttttgcaaatgcatagatataa	CRISPR spacer
caacaggaaatggaggttttgcaaatgcatagatataa	Protospacer
**************************************

99. spacer 4.8|148397|38|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

caacaggaaatggaggttttgcaaatgcatagatataa	CRISPR spacer
caacaggaaatggaggttttgcaaatgcatagatataa	Protospacer
**************************************

100. spacer 4.9|148464|33|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

ccaaacattaaatttataatctgaaaaggggaa	CRISPR spacer
ccaaacattaaatttataatctgaaaaggggaa	Protospacer
*********************************

101. spacer 4.9|148464|33|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

ccaaacattaaatttataatctgaaaaggggaa	CRISPR spacer
ccaaacattaaatttataatctgaaaaggggaa	Protospacer
*********************************

102. spacer 4.9|148464|33|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

ccaaacattaaatttataatctgaaaaggggaa	CRISPR spacer
ccaaacattaaatttataatctgaaaaggggaa	Protospacer
*********************************

103. spacer 4.10|148526|30|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

aaacctccaatttttagttttgctaaatta	CRISPR spacer
aaacctccaatttttagttttgctaaatta	Protospacer
******************************

104. spacer 4.10|148526|30|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

aaacctccaatttttagttttgctaaatta	CRISPR spacer
aaacctccaatttttagttttgctaaatta	Protospacer
******************************

105. spacer 4.10|148526|30|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

aaacctccaatttttagttttgctaaatta	CRISPR spacer
aaacctccaatttttagttttgctaaatta	Protospacer
******************************

106. spacer 4.11|148585|22|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 0, identity: 1.0

gtacaactatgtactattattt	CRISPR spacer
gtacaactatgtactattattt	Protospacer
**********************

107. spacer 4.11|148585|22|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

gtacaactatgtactattattt	CRISPR spacer
gtacaactatgtactattattt	Protospacer
**********************

108. spacer 4.11|148585|22|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 0, identity: 1.0

gtacaactatgtactattattt	CRISPR spacer
gtacaactatgtactattattt	Protospacer
**********************

109. spacer 4.11|148585|22|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 0, identity: 1.0

gtacaactatgtactattattt	CRISPR spacer
gtacaactatgtactattattt	Protospacer
**********************

110. spacer 4.11|148585|22|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 0, identity: 1.0

gtacaactatgtactattattt	CRISPR spacer
gtacaactatgtactattattt	Protospacer
**********************

111. spacer 4.11|148585|22|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

gtacaactatgtactattattt	CRISPR spacer
gtacaactatgtactattattt	Protospacer
**********************

112. spacer 4.11|148585|22|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 0, identity: 1.0

gtacaactatgtactattattt	CRISPR spacer
gtacaactatgtactattattt	Protospacer
**********************

113. spacer 4.11|148585|22|NC_010379|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 0, identity: 1.0

gtacaactatgtactattattt	CRISPR spacer
gtacaactatgtactattattt	Protospacer
**********************

114. spacer 4.12|148636|41|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

caaaggggcacacaggaggttttacaaatgcataaatataa	CRISPR spacer
caaaggggcacacaggaggttttacaaatgcataaatataa	Protospacer
*****************************************

115. spacer 4.13|148706|36|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 0, identity: 1.0

ctataattttacctctgactttggtattttataaat	CRISPR spacer
ctataattttacctctgactttggtattttataaat	Protospacer
************************************

116. spacer 1.2|123|35|NC_010379|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 1, identity: 0.971

gtttaaagattataagttaaggatatgtttttaat	CRISPR spacer
gtttaaagattataagttaaggatatggttttaat	Protospacer
*************************** *******

117. spacer 1.3|187|34|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 1, identity: 0.971

ctattgattgacaaaaatttttagttttatttaa	CRISPR spacer
ctattgatttacaaaaatttttagttttatttaa	Protospacer
********* ************************

118. spacer 1.4|250|37|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 1, identity: 0.973

cggaggtttttgtaatgctaaatcctataaaaaacaa	CRISPR spacer
tggaggtttttgtaatgctaaatcctataaaaaacaa	Protospacer
.************************************

119. spacer 1.4|250|37|NC_010379|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 1, identity: 0.973

cggaggtttttgtaatgctaaatcctataaaaaacaa	CRISPR spacer
cggaggtttttgtaatgctaaattctataaaaaacaa	Protospacer
***********************.*************

120. spacer 1.5|316|38|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 1, identity: 0.974

ctaaataaggaacctactaattttttattgttattaaa	CRISPR spacer
ctaaataaggaacctcctaattttttattgttattaaa	Protospacer
*************** **********************

121. spacer 1.5|316|38|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 1, identity: 0.974

ctaaataaggaacctactaattttttattgttattaaa	CRISPR spacer
ctaaataaggaacctcctaattttttattgttattaaa	Protospacer
*************** **********************

122. spacer 1.5|316|38|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 1, identity: 0.974

ctaaataaggaacctactaattttttattgttattaaa	CRISPR spacer
ctaaataaggaacctcctaattttttattgttattaaa	Protospacer
*************** **********************

123. spacer 1.8|540|42|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 1, identity: 0.976

attccgtttttttaaaataggaaatttttaataaaaaaagac	CRISPR spacer
attccgtttttttaaaataggaaatttttaataaaaaaatac	Protospacer
*************************************** **

124. spacer 1.9|611|37|NC_010379|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 1, identity: 0.973

cacgcatatttgaaatatggaaaatggagtaagatgg	CRISPR spacer
cacgcatatttgaaatatggaaaatgaagtaagatgg	Protospacer
**************************.**********

125. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 1, identity: 0.971

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
ctatcgatttataaaaatttttagttttatttaa	Protospacer
***.******************************

126. spacer 1.12|802|36|NC_010379|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 1, identity: 0.972

cgttgtaaaatatgtaggtggagctaaggagtgtaa	CRISPR spacer
cgttgtaaaatatgtaggtgaagctaaggagtgtaa	Protospacer
********************.***************

127. spacer 1.15|187|44|NC_010379|CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 1, identity: 0.977

ctattgattgacaaaaatttttagttttatttaagcttaacttt	CRISPR spacer
ctattgatttacaaaaatttttagttttatttaagcttaacttt	Protospacer
********* **********************************

128. spacer 1.17|316|48|NC_010379|CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 1, identity: 0.979

ctaaataaggaacctactaattttttattgttattaaagtttaactta	CRISPR spacer
ctaaataaggaacctcctaattttttattgttattaaagtttaactta	Protospacer
*************** ********************************

129. spacer 1.17|316|48|NC_010379|CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 1, identity: 0.979

ctaaataaggaacctactaattttttattgttattaaagtttaactta	CRISPR spacer
ctaaataaggaacctcctaattttttattgttattaaagtttaactta	Protospacer
*************** ********************************

130. spacer 1.17|316|48|NC_010379|CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 1, identity: 0.979

ctaaataaggaacctactaattttttattgttattaaagtttaactta	CRISPR spacer
ctaaataaggaacctcctaattttttattgttattaaagtttaactta	Protospacer
*************** ********************************

131. spacer 1.20|611|38|NC_010379|CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 1, identity: 0.974

cacgcatatttgaaatatggaaaatggagtaagatgga	CRISPR spacer
cacgcatatttgaaatatggaaaatgaagtaagatgga	Protospacer
**************************.***********

132. spacer 1.23|802|37|NC_010379|CRT matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 1, identity: 0.973

cgttgtaaaatatgtaggtggagctaaggagtgtaag	CRISPR spacer
cgttgtaaaatatgtaggtgaagctaaggagtgtaag	Protospacer
********************.****************

133. spacer 3.2|57583|39|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 1, identity: 0.974

tttataatattaggttgttgtatttactttatttgttca	CRISPR spacer
tttataatattagattgttgtatttactttatttgttca	Protospacer
*************.*************************

134. spacer 3.2|57583|39|NC_010379|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 1, identity: 0.974

tttataatattaggttgttgtatttactttatttgttca	CRISPR spacer
tttataatattagattgttgtatttactttatttgttca	Protospacer
*************.*************************

135. spacer 3.2|57583|39|NC_010379|CRISPRCasFinder matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 1, identity: 0.974

tttataatattaggttgttgtatttactttatttgttca	CRISPR spacer
tttataatattagattgttgtatttactttatttgttca	Protospacer
*************.*************************

136. spacer 3.2|57583|39|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 1, identity: 0.974

tttataatattaggttgttgtatttactttatttgttca	CRISPR spacer
tttataatattagattgttgtatttactttatttgttca	Protospacer
*************.*************************

137. spacer 3.2|57583|39|NC_010379|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 1, identity: 0.974

tttataatattaggttgttgtatttactttatttgttca	CRISPR spacer
tttataatattagattgttgtatttactttatttgttca	Protospacer
*************.*************************

138. spacer 3.2|57583|39|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 1, identity: 0.974

tttataatattaggttgttgtatttactttatttgttca	CRISPR spacer
tttataatattagattgttgtatttactttatttgttca	Protospacer
*************.*************************

139. spacer 3.2|57583|39|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 1, identity: 0.974

tttataatattaggttgttgtatttactttatttgttca	CRISPR spacer
tttataatattagattgttgtatttactttatttgttca	Protospacer
*************.*************************

140. spacer 3.2|57583|39|NC_010379|CRISPRCasFinder matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 1, identity: 0.974

tttataatattaggttgttgtatttactttatttgttca	CRISPR spacer
tttataatattagattgttgtatttactttatttgttca	Protospacer
*************.*************************

141. spacer 4.1|147938|36|NC_010379|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 1, identity: 0.972

tgtaaagaacagaaaaaggtaattaaaaaattaaat	CRISPR spacer
tgtaaagaacagaaaaaggtaattaaagaattaaat	Protospacer
***************************.********

142. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 1, identity: 0.972

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
cataataatttttataaaaagaaataaaaaggaata	Protospacer
*********.**************************

143. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 1, identity: 0.972

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
cataataatttttataaaaagaaataaaaaggaata	Protospacer
*********.**************************

144. spacer 4.6|148261|36|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 1, identity: 0.972

cattatatatatatctttaaaaatatttttctcatt	CRISPR spacer
cattatatacatatctttaaaaatatttttctcatt	Protospacer
*********.**************************

145. spacer 4.6|148261|36|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 1, identity: 0.972

cattatatatatatctttaaaaatatttttctcatt	CRISPR spacer
cattatatacatatctttaaaaatatttttctcatt	Protospacer
*********.**************************

146. spacer 4.9|148464|33|NC_010379|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 1, identity: 0.97

ccaaacattaaatttataatctgaaaaggggaa	CRISPR spacer
cgaaacattaaatttataatctgaaaaggggaa	Protospacer
* *******************************

147. spacer 4.9|148464|33|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 1, identity: 0.97

ccaaacattaaatttataatctgaaaaggggaa	CRISPR spacer
cgaaacattaaatttataatctgaaaaggggaa	Protospacer
* *******************************

148. spacer 4.9|148464|33|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 1, identity: 0.97

ccaaacattaaatttataatctgaaaaggggaa	CRISPR spacer
cgaaacattaaatttataatctgaaaaggggaa	Protospacer
* *******************************

149. spacer 4.11|148585|22|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 1, identity: 0.955

gtacaactatgtactattattt	CRISPR spacer
gtacaactatgcactattattt	Protospacer
***********.**********

150. spacer 4.11|148585|22|NC_010379|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 1, identity: 0.955

gtacaactatgtactattattt	CRISPR spacer
gcacaactatgtactattattt	Protospacer
*.********************

151. spacer 4.13|148706|36|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 1, identity: 0.972

ctataattttacctctgactttggtattttataaat	CRISPR spacer
ctataattttacctccgactttggtattttataaat	Protospacer
***************.********************

152. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 2, identity: 0.941

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
atatcgatttataaaaatttttagttttatttaa	Protospacer
 **.******************************

153. spacer 1.11|740|33|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 2, identity: 0.939

aactttcagaaggcatattttcttaaatatttg	CRISPR spacer
aactttcagaatgcatattttcttaagtatttg	Protospacer
*********** **************.******

154. spacer 1.19|540|43|NC_010379|CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 2, identity: 0.953

attccgtttttttaaaataggaaatttttaataaaaaaagact	CRISPR spacer
attccgtttttttaaaataggaaatttttaataaaaaaataca	Protospacer
*************************************** **

155. spacer 1.21|677|35|NC_010379|CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 2, identity: 0.943

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
ctatcgatttataaaaatttttagttttatttaat	Protospacer
***.******************************

156. spacer 1.22|740|34|NC_010379|CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 2, identity: 0.941

aactttcagaaggcatattttcttaaatatttgg	CRISPR spacer
aactttcagaatgcatattttcttaagtatttgg	Protospacer
*********** **************.*******

157. spacer 4.5|148197|35|NC_010379|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 2, identity: 0.943

gttttaaaattataagttaaggatatggttttaat	CRISPR spacer
gtttaaagattataagttaaggatatggttttaat	Protospacer
**** **.***************************

158. spacer 4.6|148261|36|NC_010379|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 2, identity: 0.944

cattatatatatatctttaaaaatatttttctcatt	CRISPR spacer
cattatatacagatctttaaaaatatttttctcatt	Protospacer
*********.* ************************

159. spacer 4.8|148397|38|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 2, identity: 0.947

caacaggaaatggaggttttgcaaatgcatagatataa	CRISPR spacer
caacaggaaatggtggttttacaaatgcatagatataa	Protospacer
************* ******.*****************

160. spacer 1.14|123|45|NC_010379|CRT matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 3, identity: 0.933

gtttaaagattataagttaaggatatgtttttaatgcttaacttt	CRISPR spacer
gtttaaagattataagttaaggatatggttttaatgtttaacttc	Protospacer
*************************** ********.*******.

161. spacer 1.16|250|47|NC_010379|CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 3, identity: 0.936

cggaggtttttgtaatgctaaatcctataaaaaacaagtttaatttg	CRISPR spacer
tggaggtttttgtaatgctaaatcctataaaaaacaagtttaacttt	Protospacer
.******************************************.**

162. spacer 1.16|250|47|NC_010379|CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 3, identity: 0.936

cggaggtttttgtaatgctaaatcctataaaaaacaagtttaatttg	CRISPR spacer
cggaggtttttgtaatgctaaattctataaaaaacaagtttaacttc	Protospacer
***********************.*******************.**

163. spacer 1.21|677|35|NC_010379|CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 3, identity: 0.914

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
atatcgatttataaaaatttttagttttatttaat	Protospacer
 **.******************************

164. spacer 4.9|148464|33|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 3, identity: 0.909

ccaaacattaaatttataatctgaaaaggggaa	CRISPR spacer
acgaaaattaaatttataatctgaaaaggggaa	Protospacer
 *.** ***************************

165. spacer 2.1|57161|64|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 4, identity: 0.938

taaaaaatgttttatttttatcgtgtactttttaaatacatttagtattttttataaggg	CRISPR spacer
taaaaaatgttttatttttatcgtgtactttttaaatacatttagtattttttataaggg	Protospacer
************************************************************

166. spacer 2.1|57161|64|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 4, identity: 0.938

taaaaaatgttttatttttatcgtgtactttttaaatacatttagtattttttataaggg	CRISPR spacer
taaaaaatgttttatttttatcgtgtactttttaaatacatttagtattttttataaggg	Protospacer
************************************************************

167. spacer 3.1|57488|64|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 4, identity: 0.938

atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	CRISPR spacer
atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	Protospacer
************************************************************

168. spacer 3.1|57488|64|NC_010379|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 4, identity: 0.938

atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	CRISPR spacer
atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	Protospacer
************************************************************

169. spacer 4.7|148326|42|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 4, identity: 0.905

ctaccgaaaaacacaaaaaagatataagaatttttcctatat	CRISPR spacer
ttaaataaaaacacaaaaaagatataagaatttttcctatat	Protospacer
.**   ************************************

170. spacer 3.1|57488|64|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 5, identity: 0.922

atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	CRISPR spacer
atgatttattctttagttattttattatatttaatttcaacactagtgattatatagtgt	Protospacer
***********************************.************************

171. spacer 3.1|57488|64|NC_010379|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 5, identity: 0.922

atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	CRISPR spacer
atgatttattctttagttattttattatatttaatttcaacactagtgattatatagtgt	Protospacer
***********************************.************************

172. spacer 3.1|57488|64|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 5, identity: 0.922

atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	CRISPR spacer
atgatttattctttagttattttattatatttaatttcaacactagtgattatatagtgt	Protospacer
***********************************.************************

173. spacer 3.1|57488|64|NC_010379|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 5, identity: 0.922

atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	CRISPR spacer
atgatttattctttagttattttattatatttaatttcaacactagtgattatatagtgt	Protospacer
***********************************.************************

174. spacer 3.1|57488|64|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 5, identity: 0.922

atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	CRISPR spacer
atgatttattctttagttattttattatatttaatttcaacactagtgattatatagtgt	Protospacer
***********************************.************************

175. spacer 3.1|57488|64|NC_010379|CRISPRCasFinder matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 5, identity: 0.922

atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	CRISPR spacer
atgatttattctttagttattttattatatttaatttcaacactagtgattatatagtgt	Protospacer
***********************************.************************

176. spacer 3.1|57488|64|NC_010379|CRISPRCasFinder matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 5, identity: 0.922

atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	CRISPR spacer
atgatttattctttagttattttattatatttaatttcaacactagtgattatatagtgt	Protospacer
***********************************.************************

177. spacer 1.3|187|34|NC_010379|CRISPRCasFinder matches to NZ_CP043485 (Enterococcus faecium strain DMEA02 plasmid pDMEA1, complete sequence) position: , mismatch: 6, identity: 0.824

ctattg-attgacaaaaatttttagttttatttaa	CRISPR spacer
-tattgtattgacaaaaatttttacttatataaat	Protospacer
 ***** ***************** ** ***  *

178. spacer 1.5|316|38|NC_010379|CRISPRCasFinder matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 6, identity: 0.842

ctaaataaggaacctactaattttttattgttattaaa	CRISPR spacer
actagtaaggaacctcctaattttttattgttaataaa	Protospacer
 . *.********** ***************** ****

179. spacer 1.6|383|29|NC_010379|CRISPRCasFinder matches to NZ_CP042825 (Rhizobium sp. WL3 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

ccctccatttctaaactataattaattat	CRISPR spacer
acatacatttctaaaatatgattaattaa	Protospacer
 * * ********** ***.********

180. spacer 3.1|57488|64|NC_010379|CRISPRCasFinder matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 6, identity: 0.906

atgatttattctttagttattttattatatttaatctcaacactagtgattatatagtgt	CRISPR spacer
atgatttattctttagttattttattacatttaatttcaacactagtgattatatagtgt	Protospacer
***************************.*******.************************

181. spacer 1.6|383|29|NC_010379|CRISPRCasFinder matches to NC_014502 (Gloeothece verrucosa PCC 7822 plasmid Cy782203, complete sequence) position: , mismatch: 7, identity: 0.759

ccctccatttctaaactataattaattat	CRISPR spacer
gcgtggatttctaagctataattaattcc	Protospacer
 * *  ********.************ .

182. spacer 1.1|57|37|NC_010379|CRISPRCasFinder matches to NC_018265 (Melissococcus plutonius DAT561 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.784

gcattgaaagcataaaaaataaactagaaaaatataa	CRISPR spacer
atattgaaatcatacaaaataaactagaaaataaata	Protospacer
..******* **** ****************  *  *

183. spacer 1.6|383|29|NC_010379|CRISPRCasFinder matches to MK448509 (Streptococcus satellite phage Javan468, complete genome) position: , mismatch: 8, identity: 0.724

ccctccatttctaaactataattaattat	CRISPR spacer
tttgaaatttctaaactaaaattagttat	Protospacer
...   ************ *****.****

184. spacer 1.6|383|29|NC_010379|CRISPRCasFinder matches to NZ_CP023967 (Staphylococcus capitis strain FDAARGOS_378 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.724

ccctccatttctaaactataattaattat	CRISPR spacer
ataagcatttttaaaatataattaattaa	Protospacer
 .   *****.**** ************

185. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_CP018750 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid cp26, complete sequence) position: , mismatch: 8, identity: 0.765

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
aaagagatttataaaaaattttatttttattttt	Protospacer
  *  ************ ***** ********

186. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NC_018983 (Borrelia burgdorferi 297 plasmid 297_cp26, complete sequence) position: , mismatch: 8, identity: 0.765

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
aaagagatttataaaaaattttatttttattttt	Protospacer
  *  ************ ***** ********

187. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NC_017395 (Borreliella burgdorferi JD1 plasmid JD1 cp26, complete sequence) position: , mismatch: 8, identity: 0.765

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
aaagagatttataaaaaattttatttttattttt	Protospacer
  *  ************ ***** ********

188. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_CP028867 (Borreliella garinii strain 20047 plasmid cp26, complete sequence) position: , mismatch: 8, identity: 0.765

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
aaagagatttataaaaaattttatttttattttt	Protospacer
  *  ************ ***** ********

189. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_CP015797 (Borrelia mayonii strain MN14-1539 plasmid cp26, complete sequence) position: , mismatch: 8, identity: 0.765

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
aaagagatttataaaaaattttatttttattttt	Protospacer
  *  ************ ***** ********

190. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_CP015781 (Borrelia mayonii strain MN14-1420 plasmid cp26, complete sequence) position: , mismatch: 8, identity: 0.765

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
aaagagatttataaaaaattttatttttattttt	Protospacer
  *  ************ ***** ********

191. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NC_017725 (Borreliella garinii BgVir plasmid cp26, complete sequence) position: , mismatch: 8, identity: 0.765

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
aaagagatttataaaaagttttatttttattttt	Protospacer
  *  ************ ***** ********

192. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_CP025502 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence) position: , mismatch: 8, identity: 0.765

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
attattatttaaaaaaatatttagttttatttta	Protospacer
 *  . ***** ****** ************* *

193. spacer 1.11|740|33|NC_010379|CRISPRCasFinder matches to MN693772 (Marine virus AFVG_250M408, complete genome) position: , mismatch: 8, identity: 0.758

aactttcagaaggcatattttcttaaatatttg	CRISPR spacer
tattatcacaaggcatattttctaaaataaaag	Protospacer
 *.* *** ************** *****   *

194. spacer 4.7|148326|42|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 8, identity: 0.81

ctaccgaaaaacacaaaaaagatataagaatttttcctatat	CRISPR spacer
ctaccgaaaaacaaaaaaaagatataagattttgcataattt	Protospacer
************* *************** *** . . ** *

195. spacer 4.10|148526|30|NC_010379|CRISPRCasFinder matches to NZ_AP019719 (Clostridium butyricum strain NBRC 13949 plasmid pCBU3, complete sequence) position: , mismatch: 8, identity: 0.733

aaacctccaatttttagttttgctaaatta	CRISPR spacer
ttacctccaattttttattttgctattatt	Protospacer
  ************* .********   *

196. spacer 1.6|383|29|NC_010379|CRISPRCasFinder matches to MK295204 (Shigella phage vB_SdyM_006, complete genome) position: , mismatch: 9, identity: 0.69

ccctccatttctaaactataattaattat	CRISPR spacer
tttaatatttctaatctataattaatttc	Protospacer
...  .******** ************ .

197. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_CP020479 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-1, complete sequence) position: , mismatch: 9, identity: 0.735

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
taacttatttataataatttttagttatatattt	Protospacer
. **. ******** *********** *** *

198. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_CP020479 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-1, complete sequence) position: , mismatch: 9, identity: 0.735

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
taacttatttataataatttttagttatatattt	Protospacer
. **. ******** *********** *** *

199. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NC_015386 (Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete sequence) position: , mismatch: 9, identity: 0.735

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
ctggcgatttataaaaattttcatttttctcagg	Protospacer
**. *****************.* **** *. ..

200. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to MN694510 (Marine virus AFVG_250M493, complete genome) position: , mismatch: 9, identity: 0.735

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
ttaacacagcattaacatttttagttttatttaa	Protospacer
.** *.   .** ** ******************

201. spacer 1.21|677|35|NC_010379|CRT matches to NZ_CP018750 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.743

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
aaagagatttataaaaaattttatttttattttta	Protospacer
  *  ************ ***** ********  .

202. spacer 1.21|677|35|NC_010379|CRT matches to NC_018983 (Borrelia burgdorferi 297 plasmid 297_cp26, complete sequence) position: , mismatch: 9, identity: 0.743

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
aaagagatttataaaaaattttatttttatttttt	Protospacer
  *  ************ ***** ********

203. spacer 1.21|677|35|NC_010379|CRT matches to NC_017395 (Borreliella burgdorferi JD1 plasmid JD1 cp26, complete sequence) position: , mismatch: 9, identity: 0.743

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
aaagagatttataaaaaattttatttttatttttt	Protospacer
  *  ************ ***** ********

204. spacer 1.21|677|35|NC_010379|CRT matches to NZ_CP028867 (Borreliella garinii strain 20047 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.743

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
aaagagatttataaaaaattttatttttattttta	Protospacer
  *  ************ ***** ********  .

205. spacer 1.21|677|35|NC_010379|CRT matches to NZ_CP015797 (Borrelia mayonii strain MN14-1539 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.743

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
aaagagatttataaaaaattttatttttattttta	Protospacer
  *  ************ ***** ********  .

206. spacer 1.21|677|35|NC_010379|CRT matches to NZ_CP015781 (Borrelia mayonii strain MN14-1420 plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.743

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
aaagagatttataaaaaattttatttttattttta	Protospacer
  *  ************ ***** ********  .

207. spacer 1.21|677|35|NC_010379|CRT matches to NC_017725 (Borreliella garinii BgVir plasmid cp26, complete sequence) position: , mismatch: 9, identity: 0.743

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
aaagagatttataaaaagttttatttttattttta	Protospacer
  *  ************ ***** ********  .

208. spacer 1.21|677|35|NC_010379|CRT matches to NZ_CP025502 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence) position: , mismatch: 9, identity: 0.743

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
attattatttaaaaaaatatttagttttattttaa	Protospacer
 *  . ***** ****** ************* *.

209. spacer 1.22|740|34|NC_010379|CRT matches to MN693772 (Marine virus AFVG_250M408, complete genome) position: , mismatch: 9, identity: 0.735

aactttcagaaggcatattttcttaaatatttgg	CRISPR spacer
tattatcacaaggcatattttctaaaataaaagc	Protospacer
 *.* *** ************** *****   *

210. spacer 4.6|148261|36|NC_010379|CRISPRCasFinder matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 9, identity: 0.75

cattatatatatatctttaaaaatatttttctcatt	CRISPR spacer
ggatatatatataattttaaaaatattttttctata	Protospacer
 . ********** .***************...**

211. spacer 4.6|148261|36|NC_010379|CRISPRCasFinder matches to NZ_AP019717 (Clostridium butyricum strain NBRC 13949 plasmid pCBU1, complete sequence) position: , mismatch: 9, identity: 0.75

cattatatatatatctttaaaaatatttttctcatt	CRISPR spacer
ggatatatatataattttaaaaatattttttctata	Protospacer
 . ********** .***************...**

212. spacer 4.8|148397|38|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 9, identity: 0.763

caacagga----aatggaggttttgcaaatgcatagatataa	CRISPR spacer
----aggggcacacaggaggttttacaaatgcataaatataa	Protospacer
    ***.    *  *********.**********.******

213. spacer 1.1|57|37|NC_010379|CRISPRCasFinder matches to NZ_CP014173 (Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence) position: , mismatch: 10, identity: 0.73

gcattgaaagcataaaaaataaactagaaaaatataa	CRISPR spacer
atatattgaatataaaaaataaaccagaaaaacataa	Protospacer
..**   .*..*************.*******.****

214. spacer 1.7|441|70|NC_010379|CRISPRCasFinder matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 10, identity: 0.857

cctttatgtgagttcttttttattatattgttattgagcaagaactccaattttactgtt	CRISPR spacer
cctttatgtgagttcttttttattatattgttattgagcaagaactccaattttactgtt	Protospacer
************************************************************

215. spacer 1.7|441|70|NC_010379|CRISPRCasFinder matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 10, identity: 0.857

cctttatgtgagttcttttttattatattgttattgagcaagaactccaattttactgtt	CRISPR spacer
cctttatgtgagttcttttttattatattgttattgagcaagaactccaattttactgtt	Protospacer
************************************************************

216. spacer 1.7|441|70|NC_010379|CRISPRCasFinder matches to NC_010379 (Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequence) position: , mismatch: 10, identity: 0.857

cctttatgtgagttcttttttattatattgttattgagcaagaactccaattttactgtt	CRISPR spacer
cctttatgtgagttcttttttattatattgttattgagcaagaactccaattttactgtt	Protospacer
************************************************************

217. spacer 1.7|441|70|NC_010379|CRISPRCasFinder matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 10, identity: 0.857

cctttatgtgagttcttttttattatattgttattgagcaagaactccaattttactgtt	CRISPR spacer
cctttatgtgagttcttttttattatattgttattgagcaagaactccaattttactgtt	Protospacer
************************************************************

218. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_KY595969 (Enterococcus faecium strain VREfm87 plasmid pMIS005, complete sequence) position: , mismatch: 10, identity: 0.706

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
tttgttttttagaaaaatttttaattttattttt	Protospacer
.*  .  **** ***********.********

219. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_LR135249 (Enterococcus faecium isolate E6988 plasmid 7) position: , mismatch: 10, identity: 0.706

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
tttgttttttagaaaaatttttaattttattttt	Protospacer
.*  .  **** ***********.********

220. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_LR135240 (Enterococcus faecium isolate E7067 plasmid 6) position: , mismatch: 10, identity: 0.706

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
tttgttttttagaaaaatttttaattttattttt	Protospacer
.*  .  **** ***********.********

221. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_CP013332 (Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
ggaaaatgatataaaaatttttaattttattaaa	Protospacer
  *  .   **************.******* **

222. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_LR135224 (Enterococcus faecium isolate E7040 plasmid 6) position: , mismatch: 10, identity: 0.706

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
tttgttttttagaaaaatttttaattttattttt	Protospacer
.*  .  **** ***********.********

223. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_LR135349 (Enterococcus faecium isolate E8202 plasmid 6) position: , mismatch: 10, identity: 0.706

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
tttgttttttagaaaaatttttaattttattttt	Protospacer
.*  .  **** ***********.********

224. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_LR135361 (Enterococcus faecium isolate E7948 plasmid 5) position: , mismatch: 10, identity: 0.706

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
tttgttttttagaaaaatttttaattttattttt	Protospacer
.*  .  **** ***********.********

225. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to NZ_CP044278 (Enterococcus faecium strain V2937 plasmid pHVH-V2937-4, complete sequence) position: , mismatch: 10, identity: 0.706

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
tttgttttttagaaaaatttttaattttattttt	Protospacer
.*  .  **** ***********.********

226. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to MN694586 (Marine virus AFVG_250M370, complete genome) position: , mismatch: 10, identity: 0.706

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
taagttttataaaaaaatttttaattttatttat	Protospacer
. * .  * ** ***********.*********

227. spacer 1.21|677|35|NC_010379|CRT matches to NZ_CP013332 (Fusobacterium hwasookii ChDC F174 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
ggaaaatgatataaaaatttttaattttattaaag	Protospacer
  *  .   **************.******* ***

228. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to NZ_CP004876 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence) position: , mismatch: 10, identity: 0.722

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
ttgtataatcttaatataaagaaataaaaattttta	Protospacer
.   ******** *** *************    **

229. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to NC_017203 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence) position: , mismatch: 10, identity: 0.722

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
ttgtataatcttaatataaagaaataaaaattttta	Protospacer
.   ******** *** *************    **

230. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to NC_020384 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence) position: , mismatch: 10, identity: 0.722

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
ttgtataatcttaatataaagaaataaaaattttta	Protospacer
.   ******** *** *************    **

231. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 10, identity: 0.722

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
ttgtataatcttaatataaagaaataaaaattttta	Protospacer
.   ******** *** *************    **

232. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to NZ_CP004861 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence) position: , mismatch: 10, identity: 0.722

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
ttgtataatcttaatataaagaaataaaaattttta	Protospacer
.   ******** *** *************    **

233. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to NZ_CP010091 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence) position: , mismatch: 10, identity: 0.722

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
ttgtataatcttaatataaagaaataaaaattttta	Protospacer
.   ******** *** *************    **

234. spacer 4.2|148003|36|NC_010379|CRISPRCasFinder matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 10, identity: 0.722

cataataatctttataaaaagaaataaaaaggaata	CRISPR spacer
tttgcggttatttattaaaagaaatagaaaggaata	Protospacer
. *.  . * ***** **********.*********

235. spacer 4.4|148133|35|NC_010379|CRISPRCasFinder matches to AP012536 (Stx2-converting phage Stx2a_1447 proviral DNA, complete genome) position: , mismatch: 10, identity: 0.714

caaaatcggaggctttttaataatatttttaataa	CRISPR spacer
ctttaagggaggcttttttatgatatttttaagtg	Protospacer
*   *  *********** **.**********  .

236. spacer 4.4|148133|35|NC_010379|CRISPRCasFinder matches to NC_049941 (Stx2-converting phage Stx2a_WGPS2 proviral DNA, complete genome) position: , mismatch: 10, identity: 0.714

caaaatcggaggctttttaataatatttttaataa	CRISPR spacer
ctttaagggaggcttttttatgatatttttaagtg	Protospacer
*   *  *********** **.**********  .

237. spacer 1.21|677|35|NC_010379|CRT matches to NZ_KY595969 (Enterococcus faecium strain VREfm87 plasmid pMIS005, complete sequence) position: , mismatch: 11, identity: 0.686

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
tttgttttttagaaaaatttttaattttatttttt	Protospacer
.*  .  **** ***********.********

238. spacer 1.21|677|35|NC_010379|CRT matches to NZ_LR135249 (Enterococcus faecium isolate E6988 plasmid 7) position: , mismatch: 11, identity: 0.686

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
tttgttttttagaaaaatttttaattttatttttt	Protospacer
.*  .  **** ***********.********

239. spacer 1.21|677|35|NC_010379|CRT matches to NZ_LR135240 (Enterococcus faecium isolate E7067 plasmid 6) position: , mismatch: 11, identity: 0.686

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
tttgttttttagaaaaatttttaattttatttttt	Protospacer
.*  .  **** ***********.********

240. spacer 1.21|677|35|NC_010379|CRT matches to NZ_LR135224 (Enterococcus faecium isolate E7040 plasmid 6) position: , mismatch: 11, identity: 0.686

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
tttgttttttagaaaaatttttaattttatttttt	Protospacer
.*  .  **** ***********.********

241. spacer 1.21|677|35|NC_010379|CRT matches to NZ_LR135349 (Enterococcus faecium isolate E8202 plasmid 6) position: , mismatch: 11, identity: 0.686

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
tttgttttttagaaaaatttttaattttatttttt	Protospacer
.*  .  **** ***********.********

242. spacer 1.21|677|35|NC_010379|CRT matches to NZ_LR135361 (Enterococcus faecium isolate E7948 plasmid 5) position: , mismatch: 11, identity: 0.686

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
tttgttttttagaaaaatttttaattttatttttt	Protospacer
.*  .  **** ***********.********

243. spacer 1.21|677|35|NC_010379|CRT matches to NZ_CP044278 (Enterococcus faecium strain V2937 plasmid pHVH-V2937-4, complete sequence) position: , mismatch: 11, identity: 0.686

ctaccgatttataaaaatttttagttttatttaag	CRISPR spacer
tttgttttttagaaaaatttttaattttatttttt	Protospacer
.*  .  **** ***********.********

244. spacer 1.10|677|34|NC_010379|CRISPRCasFinder matches to MH598806 (Pelagibacter phage HTVC119P, complete genome) position: , mismatch: 14, identity: 0.588

ctaccgatttataaaaatttttagttttatttaa	CRISPR spacer
ttaattaaaattaaaaatttttattctgactata	Protospacer
.** . *    ************ *.* *.*  *

245. spacer 4.6|148261|36|NC_010379|CRISPRCasFinder matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 15, identity: 0.583

cattatatatatatctttaaaaatatttttctcatt	CRISPR spacer
tatagaaaaaatatttttaaaattatatatatatcc	Protospacer
.** . * * ****.******* *** * * *  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

42316 : 54017

Clostridium_botulinum_D_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012291519.1\|42316_46192_-	botulinum neurotoxin type B	Q332E0	Clostridium_botulinum_C_phage	4.4e-187	33.2
WP_003404192.1\|46217_49811_-	non-toxic nonhemagglutinin NTNH	Q332E1	Clostridium_botulinum_C_phage	0.0e+00	69.0
WP_003404193.1\|49972_50509_-	botulinum neurotoxin transcription-activating sigma factor BotR	Q9ZWV5	Clostridium_botulinum_D_phage	5.6e-40	52.8
WP_012291520.1\|50735_51620_+	ricin-type beta-trefoil lectin domain protein	Q38196	Clostridium_botulinum_phage	8.9e-35	32.4
WP_012291566.1\|51682_52123_+	hemagglutinin	Q786Y1	Clostridium_botulinum_D_phage	7.8e-48	63.7
WP_012291512.1\|52136_54017_+	botulinum neurotoxin hemagglutinin HA70 subunit	Q786X9	Clostridium_botulinum_D_phage	7.8e-238	67.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010516

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_010379

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection