CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010513	Xylella fastidiosa M12, complete sequence	2 crisprs	DEDDh,Cas9_archaeal,WYL,csa3,c2c9_V-U4,cas3,DinG	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010513_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010513_1

974946-975034

Orphan

Consensus_repeat	Method
GGCGGCAGATCAGATAACCGTAATCGTTTAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010513_1

>merge|NC_010513|1|974946-975034|CRISPRCasFinder
GGCGGCAGATCAGATAACCGTAATCGTTTAGGTGCGGGCGCGTTTTCGTTGGTTTCCGGCGGCAGATCAGATAATCGTAATCGTTTAGG

>NC_010513|1|1|974946-975034|CRISPRCasFinder
GGCGGCAGATCAGATAACCGTAATCGTTTAGG	TGCGGGCGCGTTTTCGTTGGTTTCC
GGCGGCAGATCAGATAATCGTAATCGTTTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010513.1\|WP_004083651.1\|975042_976254_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|272863
NC_010513.1\|WP_004083657.1\|969526_970546_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271181
NC_010513.1\|WP_021358615.1\|984845_985172_-\|hypothetical-protein	unknown	unknown	unknown
NC_010513.1\|WP_004083644.1\|983521_984940_-\|DNA-packaging-protein	unknown	unknown	gnl\|CDD\|227852
NC_010513.1\|WP_021358572.1\|966066_967434_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NC_010513.1\|WP_004083658.1\|967965_969375_+\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NC_010513.1\|WP_004083643.1\|985922_986276_-\|hypothetical-protein	unknown	unknown	unknown
NC_010513.1\|WP_004083646.1\|980620_981478_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236892
NC_010513.1\|WP_004084093.1\|972172_972526_-\|hypothetical-protein	unknown	unknown	unknown
NC_010513.1\|WP_012337786.1\|964627_965896_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225406
NC_010513.1\|WP_004083645.1\|981497_983519_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293119
NC_010513.1\|WP_004084211.1\|977062_977308_-\|hypothetical-protein	unknown	unknown	unknown
NC_010513.1\|WP_012337787.1\|971390_971933_-\|pilin	unknown	unknown	gnl\|CDD\|227304
NC_010513.1\|WP_004083648.1\|978942_979350_-\|hypothetical-protein	unknown	unknown	unknown
NC_010513.1\|WP_080513455.1\|974212_974602_-\|hypothetical-protein	unknown	unknown	unknown
NC_010513.1\|WP_004083647.1\|979353_980583_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371651
NC_010513.1\|WP_004083654.1\|972522_973305_-\|hypothetical-protein	unknown	unknown	unknown
NC_010513.1\|WP_041572637.1\|973338_974223_-\|hypothetical-protein	unknown	unknown	unknown
NC_010513.1\|WP_012337788.1\|976257_977013_-\|hypothetical-protein	unknown	unknown	unknown
NC_010513.1\|WP_049756312.1\|970853_971294_+\|SocA-family-protein	unknown	unknown	gnl\|CDD\|226128

Protein	Function_ID	Function_description	E-value
NC_010513.1\|WP_004083651.1\|975042_976254_-\|hypothetical-protein	gnl\|CDD\|272863	TIGR00028, Hypothetical_protein_Rv2872/MT2939/Mb2897., toxin-antitoxin system PIN domain toxin. Members of this protein consist almost entirely of a PIN (PilT N terminus) domain (see pfam01850). This family was originally defined a set of twelve closely related paralogs found in Mycobacterium tuberculosis, but additional members are found now Synechococcus sp. WH8102, etc. Inspection of genomic regions suggests these represent toxin components of toxin-antitoxin regions, potentially important to creating dormant persister cells.	0.00508667
NC_010513.1\|WP_004083657.1\|969526_970546_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	1.7917e-39
NC_010513.1\|WP_004083645.1\|981497_983519_-\|hypothetical-protein	gnl\|CDD\|293119	pfam16510, P22_portal, Phage P22-like portal protein. The portal protein of P22 and similar Podoviridae tail phages is a dodecameric structure consisting of a hip (2), a leg(1) and a barrel(3). DNA viruses such as bacteriophages and herpesviruses deliver their genome into and out of the capsid through large proteinaceous assemblies, known as portal proteins. Domains 1 and 3 are mostly helical and form the majority of the DNA-translocating channel. Domain 2 adopts an alpha-beta-fold characterized by two sheets of eight beta-strands, which cross each other to form a beta-barrel-like structure.	1.44999e-63
NC_010513.1\|WP_012337787.1\|971390_971933_-\|pilin	gnl\|CDD\|227304	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion].	3.82648e-27
NC_010513.1\|WP_021358572.1\|966066_967434_-\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NC_010513.1\|WP_004083658.1\|967965_969375_+\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NC_010513.1\|WP_004083647.1\|979353_980583_-\|hypothetical-protein	gnl\|CDD\|371651	pfam11651, P22_CoatProtein, P22 coat protein - gene protein 5. This family of proteins represents gene product 5 from bacteriophage P22. This protein is involved in the formation of the pro-capsid shells in the bacteriophage. In total, there are 415 molecules of the coat protein which are arranged in an icosahedral shell.	3.97037e-51
NC_010513.1\|WP_004083646.1\|980620_981478_-\|hypothetical-protein	gnl\|CDD\|236892	PRK11281, PRK11281, mechanosensitive channel MscK.	0.000193948
NC_010513.1\|WP_004083644.1\|983521_984940_-\|DNA-packaging-protein	gnl\|CDD\|227852	COG5565, COG5565, Bacteriophage terminase large (ATPase) subunit and inactivated derivatives [General function prediction only].	8.93175e-33
NC_010513.1\|WP_049756312.1\|970853_971294_+\|SocA-family-protein	gnl\|CDD\|226128	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown].	3.67089e-59
NC_010513.1\|WP_012337786.1\|964627_965896_-\|cupin-domain-containing-protein	gnl\|CDD\|225406	COG2850, COG2850, Uncharacterized conserved protein [Function unknown].	7.59376e-164

>NC_010513.1|WP_080513455.1|974212_974602_-|hypothetical-protein
MAQLAVKGGIAAAEGAGYGALGETRTGENRLTNAGYGALGGVLGRGASGVVHGAARRLVREADPILRAATDIAQREGIPLHISQITQSTPLRTAASVAKYIPFSGADAAARNQQNAWNKALTRHVGDAT
>NC_010513.1|WP_041572637.1|973338_974223_-|hypothetical-protein
MQHDRWLASQKQRFNDTYNAIWDDRNIALSPQAAARMQEVVNDAYRDLGTDGGKIVQNQFYRIFNDIVRAGHEGPISGRNYQTLVRDLAGVQPGTSTGHYVGRLRKELVKDAEQSLKTSNDPGDVAALELLKKTNQQYNNFKTLEKLLTRPAGARADITPAGLWSAVNARGPKATQEYRDLAKIGQTVLKDPIPDSGTPGRMLSMGLLGGGGVVTGGLIPTLATIAGGVTLGRALNSATLGNLLARNAAAPSLLAPLAPLLTAEGAIGTSRHAARQAAQRAFIVHQQQLHNADQ
>NC_010513.1|WP_004083654.1|972522_973305_-|hypothetical-protein
MSAFRLFSRLNTFHGLSGQLVASGSLKFFDAGTTTPRNVYSDQRLSVNNGAVIPLDSSGRPNVDIWGDGAYFVEVFDVLGVKQGDADNVNIPGGGGTTIPALESSKYLTNNGAVLLWAAVREVPDPAGMGGKILGTDGANLLWQPLPSAPATPYTIGVASLKLGTLLIQWGRDVAPATGNYSTVKIITFPTPFSGLPYFMKASVTSALVTANSLAAESASNASTTGVHFNFVIADSKEKNSDRINSNIPFDWIAFGPTTT
>NC_010513.1|WP_004084093.1|972172_972526_-|hypothetical-protein
MSQIPHANEPFLDAAGCVARSWRTYLASLASSETRQTLLQLQQQMSALQAALDSAHSAPPAAQLQAIDSLNMVGTLASGLATLRLEGDTATPGASCYYGTNANGVKGWHRLPTRVTG
>NC_010513.1|WP_012337787.1|971390_971933_-|pilin
MEKRQQGFTLLEVMIVLIVVPVLAAITLPLYQNYIAKAQVTVALADITPGRVGVEMQLIKGQRTQSPSDISLHAPTTRCRSITVDVEAPRTRSLIDPNGKELVLPANSPMSSIRCVINGTSAVDGKFIEWLRISDVGLNGSSADTDGNNIVGKWFCLTNVDEELRPIACKDSLADVPAYT
>NC_010513.1|WP_049756312.1|970853_971294_+|SocA-family-protein
MLKLVYLAHGWCLGVHRQPLIDEPVEAWRAGPVIRSLYNAIKQYGSNAITERLPVRWFSWGRALKIDATAAAILASVWVTYRRYGGVELAEITRAEGSPWWTTWKGLNENAMDAERWVIDNALIQAFYAQKIKAHNAGEGEHAALT
>NC_010513.1|WP_004083657.1|969526_970546_-|tyrosine-type-recombinase/integrase
MGRKPIKAGAIPRFRVRPQKSGVVYYYYDHGGKPRKETPLGRDYGLAIQRWAELEHAQITPAIAVTFRHVAERYRAEVIPTKAYNTQRMHHIYLNYLLKFFDDPPAPFESIKPVNIRQYLDWRTSKVSANREVALFSHLWNWARSKGITDLPNPCGGIRRNKERGRDVYIDDTTYRAVYQAADQTLRDAMDLAYLTGQRVSDVVNMDERHIVNGALEICQAKTGVKLAIAITGELAVLIKRILARKRGMKLRSTRLIVDEKGLGLNWKKLAYRFRKVRAAAGIAKEVFQFRDLRAKAATDKADLAGDMRQAQAQLGHASVTMTEHYVRKRRGAKVTPTR
>NC_010513.1|WP_004083658.1|967965_969375_+|class-II-fumarate-hydratase
MSNSDRYRIEHDSMGDLRVPIDALWGAQTQRAIENFPISGRSMPQGFIHALGFIKAAAAKVNAELGLLPKSMAKEIEAAALDVAAGRYDAEFPVDIYQTGSGTSSNMNANEVIATLAMRATKGPIHPNDHVNLGQSSNDVVPTAIRISATLAVQGRLLPALKHLRKMINKRARGLGSVVKTGRTHLMDAMPLTFAQEFGAWSAQIVSAEARLNDTLKRLHRLPLGGTAIGTGINTDPHFGRNAVKVLSALTGIHFESANNKFEGLAAQDDLVELSGQFNALAVALMKIANDLRWMNAGPLAGLGEIELPALQPGSSIMPGKVNPVIPEAVVMVALQVIGHHTAVTVAGQSGNFQLNVTLPLIAYNLLESATLLGNVVMLLADKVIVGLKVRQDRVQEVLERNPILVTALNPIIGYEKAAVIAKRAYKEHRPVLEVACEESDLNPAELARLLDPTALTEGGIHVLGGDGG
>NC_010513.1|WP_021358572.1|966066_967434_-|adenylosuccinate-lyase
MSHLPLLALSPLDGRYLSKVDTLRPIFSEYGLIKARVKVEIAWLLALAAEPNIVELAPFSVAAQTRLRALADGLTIEHAARVKEIEHTTNHDVKAVEYFIKEQLKDDTELRPGLEFVHFACTSEDINNLSYSLMLQQARDEVLLPTLDGIATHLRTLAHAQAAQPMLSRTHGQTASPTTLGKEIANVVARLERQRHQIATIALSGKINGAVGNYNAHTISYPEVNWPALAQRFVESLGLVFNPYTTQIEPHDTIAEISDAIRRANTILIDLARDLWGYISLGYFKQKLKEGEIGSSTMPHKVNPIDFENAEGNFGVANALFEHFSTKLPISRWQRDLTDSTVLRALGTAFGHTQVALDSLNKGLHKLSPNPERIDADLDVAWEVLAEAVQTIMRRHNLPNPYEQLKALTRGQGITADSMRAFIETLDLPTEAKQRLHDLTPRAYTGLAKQLALNI
>NC_010513.1|WP_012337786.1|964627_965896_-|cupin-domain-containing-protein
MKRSVPLFPFEIQATDQYPLGMPEEYFLHRYWQKRPLLIRNAFPDFHSPVTPEDLAGLACEEGVLCRLVRHNRNTDTWEVRHGPFQEEEFPKLPDHDWTLLVQDVDKWDQDVRALLEHFRFLPRWRIDDIMISFAATHGSVGAHVDQYDVFLLQGQGHRHWHIDASVAMGRKAPPLDFRNDVDIKLLRQFTPTHEWVLAPGDMLYLPPLVPHHGVADDPCLTYSLGMRAPSSAELISDWLDTLISEADEAVRYQDADLTRPEDPYEIDAAATDRAIAALNALRMHEDPEQLGNWFGRFITTYRSSNAIVPYTTTPQRETLEHALASGSELIRHPWSRTAWRRASRDATLFCSGLEFTLTSQDAQRLAAAERIDIHVYTALSERGRAALFDLVGQGHYQLDDNTLEKDARNKEASSATACPED
>NC_010513.1|WP_004083651.1|975042_976254_-|hypothetical-protein
MATPLEIYDYVKRGFNEGKQRATNRLLGQTLNATDPTQRQAYLRALIDTDPQAGYALQQQFQKNAQAAQEKQQQTATELARAWLSTANITPQQRQNFYNTFITPQSQAAKLPIPEQYDPEAFDQEAKARIAMTQTGQSAQPYSLAPGARRYDANNQLVAEAPLQEKPHYDADRAGFVQLASDGTPVFKPVPGITPKPEPSQQLTPYQQAQLSLGQARLALDTETRRDAAETKKAALQAKAEQNQQAALARHHDAVESATTLIGAIDRLRNSPGYKGLGTPLGGLSAAFPYTDVRDAQAQLEVLKAQIALGVMSKLKALSPQGATGFGALSEKELAVIQNSIDSLSPGISHAKLEQSLNEIQTTMEKIKNTPPPYSVGYIIQRGGKQYRVVGGTPDDLYVEEVP
>NC_010513.1|WP_012337788.1|976257_977013_-|hypothetical-protein
MWSALIPGAASLIGSLIQGNAARRAGNAQARASQEAIAEQQRQYNQARQDQLPWLTAGQNALTGQQAVLSGDYSGFEKAPDYTYALDQGLQGLDRSAAARGSLYSGGHQADVMKFAQGLASQNLNNYWNRLTGLSGSGQAAASQLAGLGQSYAANVGNQYNNAAAARAGAYYQTANNTTDALASLGNAFGNWYQGRNPSNTNATTYTDDYANTLAGSNANAYANNPYANNAFIRNPYRRNQWYASNQGLGG
>NC_010513.1|WP_004084211.1|977062_977308_-|hypothetical-protein
MVLLYGLSNMTRTVLLRYSKDGGCNWSAWVARDLGDIGVYQKRVRRYRLGQGRRWVFDIRITDPVVANLLAMSLQTAPGPA
>NC_010513.1|WP_004083648.1|978942_979350_-|hypothetical-protein
MSTVAEIIRDALGYLRVLDANEAAEAEDATTAMRMLNLMMHSWQANNLALGWHEVTNPTDILPAPKQAEIAIACNLAVLLAARYGAPLDQAVIDHARYEKANLISAAIRAEDARMTYDLPRPAQQRVRDTVEDDP
>NC_010513.1|WP_004083647.1|979353_980583_-|hypothetical-protein
MGTQALTHQMIARESAKMLVEQNNVVTNINTTRSKEFGEEINGYKKGDTVKIMVPPMPVSFSGANFAGDRFANAPSVSETYVNLVVDQQYHVPLTFTAKEKKLDLTDFSKRFLRPAMNSLSSKVNAYLLKSMYLQTPNVVGTWGTIPGTRPPWRAAASVLDNHLAPEADRCAHFSTDANDALAETNVTLFHTSDEIRGEFSKNAVGMFAGLEFYKQLALPTHTNGPGSGLVVTGTGNQGATLAIDDTKGDTRTALVVLSKGTIFTLAGVFETHPITGEATTRLRQFLVTTDYRRGEYGVTIYPPIVLTSTTTIGTVTALPKDRTALTIVGAPSTAAVQNLVFHEDAFATAFVPLPVLANCDGYTATVKSISVRVMSFGDGKADVEHTRIDVLFGTPVAVRPDHACRVTQ
>NC_010513.1|WP_004083646.1|980620_981478_-|hypothetical-protein
MTEDTTTSPNVAATVDASQLPKNDAQAEQLEQQQHTPDTEHTTNDAELTQQDAEKKQRYRSREFIQRINNENAELRQRLDALERQYHTPTPRPGTPPPDGAPKLEQYDYDLNAFLDARLNYLRQQWQQEQQQTQEERQQQQAYAAYQQRLTAFVDTHQDFYETVSAIAPELLPVELQAAIIAHEKGPEIAYHLANNEDELWSLASMRPEVLAAAVERLAARLNTAPPAVPQKNVVTLTGRTHSKPLSNAPPPPPTVSGRSPTDIPPEKMTDEDWYARDVEKRRKR
>NC_010513.1|WP_004083645.1|981497_983519_-|hypothetical-protein
MASSTQKDTDALTEMRSRYQLASDYCRDLYDQSRDDITFVTVPGSQWDPEHKRRRKNRPSYEFPKLRLHTQQVINEMRQQRPSAKVRGVEEADHGLAEIMQGICKNIESTSNADHAYDIAYEKAVKGGFGALRITTDYLEEDDFELDIRIKAVRNPFAVKFDPAAIEIDRRDANYAFVEELLPRADFERRFPDADVTDFDGDTRVKGWRDAKQIRIAEYWWKEPRKRELLALSDGRVIFADDIAKEAGVTEADTKAFLAQTGIQIQRTRTVEGHRIRMRLTNGQSWLTKPYDFPCKFIPIIPVWGNIENIDGTDYWSGMVRFSKDQQRLHNLHRSALVEAVAKAPKAPFIVDPDMIAGHETMWKDANAEDFPFLLANIVKCGGAAPRRVEQAQVPAALIQLAGMDNDDVKASTGLYDASLGARSNETSGIAINSRKQQGAVATFNYVDNLAYAVRYTYEILVDMIPRVYDTPRAVRVLGEDGGEKWKQLYQEVQDPMTGRRVVLNDIGKGKYDVTVTVGPSYATQRMEAAEAMMQLAAQVSGAAPQIAAVLAYAGVQNMDLPGMDEVLAAFRKLLVSQGVLPPKEGDKPPEPPQPNPMQLAQLKKVTADAGLSEARAQHQQAEATQQQLRNAVTAQAVGAPMPDPGGMPQQQQQQQTPPPPQGGFLLPTSPPT
>NC_010513.1|WP_004083644.1|983521_984940_-|DNA-packaging-protein
MMPNWMQPLQSLPPKQALALLLEEKTRRRCTNQLADYAPYLKQSAFHALGATVRERLLIAANQSGKTLCAGYEAAIHLTGRYPDWWQGKRFTSANHGLAGSETGELTRRGVQRVLLGRDPKTELGTGAIPGACIDAVTWARGVPELVDTIYVRHCTGARSSVSLKSFDQGREKWQADTVHWVWFDEEPPEDVYFEGITRTNRTFGPVFMTFTPLKGMSNVVRRFLTEDAADRGYVQMSIEDAEHYSAEECARITASYPPHERDARTQGVPALGSGRVFPIAQEEISVAPFAIPAQWALIGGMDFGYDHPFAAVKLAWDRDADILYVVCAYRKRESTPIIHAAALKPWGVTLPWAWPHDGLQHDKGSGDQLAEQYRQQGLAMLPQRATFEDGTNGLEAGVTEMLDRMHTGRLKVFSHLAEWFEECSLYHRDNGRITKRHDDLLSATRYAMMMRRYAKITNPVQIAVYEYTVDY
>NC_010513.1|WP_021358615.1|984845_985172_-|hypothetical-protein
MVWLKGTSGNPSGRRPGSKNRNTQAIKDAFLEAFDRLGGVPALAKWARANRTEFYKLAARLIPTETHIAGDFALKSADDAELDAAIAKLAAEAGISVVTRGKNAPPLH
>NC_010513.1|WP_004083643.1|985922_986276_-|hypothetical-protein
MIVAAVRRIAAYLPSARLLFSYVLIASLVTLVAHAALNLTGDTKLEQRLSQPNQKLTYMESVLREQAVINAKQEAAITQLRVLHDNDSRTLSRLQTDIRWLMAQRQAPPCRRAGGVP

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Crispr_ID: NC_010513_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010513_2

2258103-2258180

Orphan

Consensus_repeat	Method
TCGTGTACTTTTAGTTTTATCGTGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010513_2

>merge|NC_010513|2|2258103-2258180|CRISPRCasFinder
TCGTGTACTTTTAGTTTTATCGTGTACACGAATCGTGTAGTCTGTACACAATTCGTGTACTTTTAGTTTTATCGTGTA

>NC_010513|2|2|2258103-2258180|CRISPRCasFinder
TCGTGTACTTTTAGTTTTATCGTGTA	CACGAATCGTGTAGTCTGTACACAAT
TCGTGTACTTTTAGTTTTATCGTGTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010513.1\|WP_076613195.1\|2265611_2265842_+\|hypothetical-protein	unknown	unknown	unknown
NC_010513.1\|WP_004084652.1\|2256834_2257635_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NC_010513.1\|WP_012338111.1\|2264737_2265490_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NC_010513.1\|WP_004084646.1\|2251551_2252259_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NC_010513.1\|WP_027700130.1\|2267824_2269921_-\|polyphosphate-kinase-1	unknown	unknown	gnl\|CDD\|235469
NC_010513.1\|WP_004084655.1\|2262742_2264101_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NC_010513.1\|WP_004084662.1\|2273904_2274210_+\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NC_010513.1\|WP_038260098.1\|2272157_2273786_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|227122
NC_010513.1\|WP_004084644.1\|2248540_2249596_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NC_010513.1\|WP_020851257.1\|2252239_2253505_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NC_010513.1\|WP_004084653.1\|2258702_2260463_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|131259
NC_010513.1\|WP_004084651.1\|2255767_2256646_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NC_010513.1\|WP_004084643.1\|2247945_2248254_+\|DUF4190-domain-containing-protein	unknown	unknown	gnl\|CDD\|379388
NC_010513.1\|WP_004084654.1\|2262063_2262720_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
NC_010513.1\|WP_004084649.1\|2253714_2254932_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_010513.1\|WP_004084645.1\|2249592_2250648_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|234593
NC_010513.1\|WP_004084647.1\|2250641_2251577_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_010513.1\|WP_004084650.1\|2254928_2255507_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226933
NC_010513.1\|WP_004084660.1\|2271379_2272075_-\|phosphate-regulon-transcriptional-regulator-PhoB	unknown	unknown	gnl\|CDD\|131209
NC_010513.1\|WP_031345908.1\|2266229_2267756_-\|exopolyphosphatase	unknown	unknown	gnl\|CDD\|223326

Protein	Function_ID	Function_description	E-value
NC_010513.1\|WP_004084652.1\|2256834_2257635_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	1.14288e-162
NC_010513.1\|WP_012338111.1\|2264737_2265490_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	5.04463e-129
NC_010513.1\|WP_004084646.1\|2251551_2252259_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	3.44774e-44
NC_010513.1\|WP_027700130.1\|2267824_2269921_-\|polyphosphate-kinase-1	gnl\|CDD\|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NC_010513.1\|WP_004084655.1\|2262742_2264101_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	3.75798e-106
NC_010513.1\|WP_004084662.1\|2273904_2274210_+\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	6.2298e-43
NC_010513.1\|WP_038260098.1\|2272157_2273786_-\|M48-family-metallopeptidase	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	8.38881e-160
NC_010513.1\|WP_004084644.1\|2248540_2249596_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NC_010513.1\|WP_020851257.1\|2252239_2253505_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NC_010513.1\|WP_004084653.1\|2258702_2260463_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|131259	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.	0
NC_010513.1\|WP_004084651.1\|2255767_2256646_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	3.6373e-138
NC_010513.1\|WP_004084643.1\|2247945_2248254_+\|DUF4190-domain-containing-protein	gnl\|CDD\|379388	pfam13828, DUF4190, Domain of unknown function (DUF4190). This integral membrane domain is functionally uncharacterized. One of the membrane helices contains two GXXG motifs that are usually associated with dimerization.	8.06015e-12
NC_010513.1\|WP_004084654.1\|2262063_2262720_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	2.9867e-79
NC_010513.1\|WP_004084649.1\|2253714_2254932_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.64646e-21
NC_010513.1\|WP_004084645.1\|2249592_2250648_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|234593	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase.	0
NC_010513.1\|WP_004084647.1\|2250641_2251577_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.84481e-17
NC_010513.1\|WP_004084650.1\|2254928_2255507_+\|response-regulator-transcription-factor	gnl\|CDD\|226933	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].	2.77993e-88
NC_010513.1\|WP_004084660.1\|2271379_2272075_-\|phosphate-regulon-transcriptional-regulator-PhoB	gnl\|CDD\|131209	TIGR02154, PhoB, phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well. [Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	4.91033e-127
NC_010513.1\|WP_031345908.1\|2266229_2267756_-\|exopolyphosphatase	gnl\|CDD\|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	5.73996e-172

>NC_010513.1|WP_004084652.1|2256834_2257635_-|30S-ribosomal-protein-S2
MPQVTMRQMLEAGVHFGHQTRYRHPKMSPNIFGARGKIHIINLEKTVPLFNDAMNFLSAVAQKRGSVLFVGTKRSARDAIKEEAERCGMPYMIQRWLGGTLTNFRTVKQSVARLKELELAETDGTFSKLVKHEVLRLRRESGKLQASLGGIKDMNRIPDAIFVIDIGHEDIAIKEAKKLGIPVVAVVDTNYDPSLVDYPIPGNDDAIRAVQLYARAAADAVLEGKAAMPNAVAVREEEFASAPDAGKKGRQAQPKKGKRASDAAAE
>NC_010513.1|WP_004084651.1|2255767_2256646_-|elongation-factor-Ts
MEITASLVKELRERTGVGMMECKKALSENAGNIDAAVEWLRKSGLVKADKKAGRIAAEGRIVVVHDGGKAVLVEINSETDFVAKDSHFLAFAEAVAQAALVAGAVDVEALKSVKLPSGETVEEARAAVIAKIGENVRVRRLARIDSANNVAAYVHGGRIGVLVEVKGGDVELARGIAMHVAAMNPPYNKVADVSAEFLEKEKEIELSKMSEKDKSKPADILEKIISGKINKIVKEVTLYGQPYVLNPDQSVEQVVKAAGADVIGFQRMEVGEGIEKIVEDYASEVMKQAGLS
>NC_010513.1|WP_004084650.1|2254928_2255507_+|response-regulator-transcription-factor
MNHSAAKIGLLVDDDTLYLRTLQRSLGRRGVDTVTATDAVSALTAARSALPSFALLDLKLGQDSGLALIQELRAIRSDMRILLVTGYASIATAVEAIKRGADEYLPKPANINTILRAISEETANGLTPDKDESALHTMTPLSRLQWEHIQQALHETDGNISAAARLLGMHRRSLQRKLTKRPSPGTLHDSDH
>NC_010513.1|WP_004084649.1|2253714_2254932_+|HAMP-domain-containing-histidine-kinase
MHTSAASFLRTLCTLRWVATAGQVVTILMATHAMGLALPQGPLWAGVCTLALFNLYAQRRISHTHVTSPNIEFGHILVDVAVLTWMVGWSGGISNPFGSLFLVLIALAALALPLRWAMAVAATCVSGYLVSAAFGLPLPHNHFNPLTLHMWGMAANFLLSTVMVLVFTTWLAQALHAREREISLLRERFTRNEGIIALATHAASVAHELNTPLATMTLLADDVAEQCQQLELCEDLETLRELLTQCRNRVLTLAAPADKLNVDIQVHNVLDQWQLMHPTIHLKHNEDAPLQLMLEPGVGHLIMVLLNNAADAGERSDRRQVDLNLHIQDGQLYGEVRDYGSGFETPQGLLPGMLFHTQKANSMGVGLALSHATVERLQGDIWMQPAKGRGTRVSFRVPLKETSTA
>NC_010513.1|WP_020851257.1|2252239_2253505_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MHDIVTPQVASDSAVPWSRRRTQAVNIGHVTVGGGHPVVVQSMTNTDTADVVASTKQVAELWRAGSEMVRLTVNNAQSAAAIPRIAERLAMMGIEVPLIGDFHYNGHQLLADEPACAEVLAKYRINPGNVGFGKKRDLQFGQLIECAIRYGKPIRIGANWGSLDQMLAAQLMDENNRRKQPWDAAQVLREVLICSAVGSAERAVELGLPRDRIVLSAKVSGVQELIAVYRDMAARCDFALHLGLTEAGIGSKGIVASSAALAVLLQEGIGDTIRISLTPEPGQSRTQEVIVAQELLQTTGHRAFTPMVTACPGCGRTTSEFFQELAKTVQQHVRDKMQVWKITHPGAETMTLAVMGCVVNGPGESRHANIGISLPGTGEMPVAPVFIDGEKSVTLRGGNIAQDFITLVDDYVERRYARFPD
>NC_010513.1|WP_004084646.1|2251551_2252259_-|phosphatase-PAP2-family-protein
MPVSPTDAFVGFCRWRRAHVRHHQLLCLGVLLPLGLCVVLAVGVYQRQSFCFDLPLLYWIRTLASPNLDAFFVVLTQQGYWYGLVGIDVLIVLILLGQRRWYVAGFAGCSLVGAKLLNIAAKHLFQRERPMLWETIAPAHGFSFPSAHAMDAMAMLTVLLVLLRGVRWRGLLMMVPGTFVLLLSASRLYLGVHYPSDILGGWSAALVWVIGLYLLMFRDADRLLALRSRTDPECD
>NC_010513.1|WP_004084647.1|2250641_2251577_+|DMT-family-transporter
MVTQGQLPLRAAMLMLFSTLSFGMMAITIRYASTQIPTTEIAFFRNAFGLLVLLPLILGPGKPLPRTQHGPRYIARSMLGLISMLCNFWAISHLPLTQAITLSYSTPLFATILASLWLHEVVRLRRLLAILAGFAGILVLLQPWSSTFSPALLVALAAALLNAVITIQMKQLSHLDPPDTVVFYTYAFWVPLSLLLALWQWHWPAGVEWVWLIATGIFGTIGQLLWIRALRLGEVSTLQPIGFMQLPLVTLLGWWLFGEHLDRYTALGASIIIGANVYITHREAVLARRTAAETIQKGVQSNGINRTQGPS
>NC_010513.1|WP_004084645.1|2249592_2250648_+|UDP-N-acetylmuramate-dehydrogenase
MSRQINTPDWILHANAPLRELNTFHIQAQARWLLEIIHPTALPQALTHPHIVGLPILVLGSGSNVLFAADPEECVLRFVNREVTILEHRIDHTLVRAGAGMAWHDLVLWSLQQGLSGLENLALIPGTVGACSIQNIGAYGVQVEEFVHIVEAYDQTEGKFVRLTASECEFAYRNSRFKREPNRYLITAVEFRLPLLHELNLNYAGISEELEALQITLPEPCDVAQAVINLRRRKLPDPEVLSNAGSFFKNPHLPREQAEQLRQHHPTLPIYPGETPESNKLSAAWLIEQCGWKGIREGDAGVAPQHSLVLVNYGEATGAELLALARRIAASVQERFGVAIEPETRLIGAQW
>NC_010513.1|WP_004084644.1|2248540_2249596_+|quinone-dependent-dihydroorotate-dehydrogenase
MYSLFRPLLFTCDTERAHDISLRTLDIAYHSGALPLLTRHTRPLPTTAFGLNFPNPVGLAAGLDKNGTHIDALFALGFGFIEIGTTTPRPQAGNPKPRLFRLTQQQAVINRMGFNNLGVDALVRNVAGARRRNGPLGINIGKNKDTPNEQASNDYRYCLERVYALADYVTINLSSPNTAGLRALQEEQTLRRLIGELRETQETLAAKHGRHVPMLIKMAPDLSDSDIDAAARVLNEMSVDGVIATNTTVTRPLLRQHPLASEAGGLSGAPLLGQSTLVLRRLRTHLPETIDLIGVGGICCGADAGAKMAAGASLVQCYTGLIFKGPQLVGECVEAIRRRLEASSSGRENTQ
>NC_010513.1|WP_004084643.1|2247945_2248254_+|DUF4190-domain-containing-protein
MDVIQQGTNGQQRTNVLAIASLVTSILGISFLPFIGSLCGIITGHMARAEIRRQPDTLKGDELAIVGLILGWLVVIPTVVFLMMFLLFFGGLGWFIHLTPAR
>NC_010513.1|WP_004084653.1|2258702_2260463_+|ABC-transporter-ATP-binding-protein/permease
MPAPHIPNRLQRLNHLRILWPFMRRHLALFSGWLIALAVSSAATLTLPSAFKQMIDHGFSSEGQINRTFALLLLVAVILAVGTAARLFSVSLLGEKIITDLRSQLYAHLIGLDASFHDRNRSNELVSRLATDSELLRSIIGSTMSVATRSTVTAIGSLIMLFITSPRLASLSLVVIPLVILPIVLGAQQLQKAARTSQDRIADTNSFAAETLRALRTVQAYAREHYERTRFDRTLETSLQAARQRIHIQTWVTAASIVLIFSAIVGVLWAGAHDVIAGRMSAGTLGEFVLYALIGGGSIGALAEVWNELQRAAGGMGRIFELLKEKNTLTVPATPALPPHPLRGEIRFERVGFHYPQRPETPALDDIDLHIRPGETIAFVGPSGAGKSTLISLLLRFYDPTHGRILIDGVDLRQTDPKVLRTHIALVQQQPTLFTASAMENIRYGRLDATTAEIEIAARSSEADGFIRALPQGYATELGEHGLSLSGGQQQRIAIARALLKEAPILLLDEATNALDAQNEQAVQQALERLMTGRTTLIIAHRLVTILKADRIVVMDQGRIVAQGTHSELIAAGGLYAKLARLQFIE
>NC_010513.1|WP_004084654.1|2262063_2262720_+|protein-L-isoaspartate-O-methyltransferase
MTIDFSIAREKMVEQQIRPWDVVDLHVLDVLAHIPREAFVPEPYRTLAYADLEIPLPGGQTMMKPVIEGRLLQALMLSPEEDVLEIGTGSGFLTACLASLGHEVVSLEINSALAASARTHLDTIGLGSNVHIEQADAFTWQPERQFSVICLTGAVSTLPLQFLQWLHPNGRMFAIHGHSPAMQAVLVRGDASTPNITSLFETDLAYLKGGEPALQFHF
>NC_010513.1|WP_004084655.1|2262742_2264101_+|TolC-family-outer-membrane-protein
MIRRCLALAVTTALFPVVSQATNLLQVYEMARAADPQLSAAESTRLYSVEGQVQARAALLPQMSGAATLARSRTEYDGISGSAISKNRQYSINGSQTLFNWNQFSNLRSQRAIAKAADFTLESAKQNLIVRSSAAYFSVLIGIESLIAAEANEASAKRQFDYAQKRLEVGLSPITDLHEARASYDQARADTITARNTLQDYYQALAEITGQPVTDLRGLPEDFRPEVPAKFSNIDQLVTEAISNNPSLKAQQLQVNAAESSISAARGEHYPTLSLSGSLGKSKAWGSSSGAMSALIPDRDQPISDTNNLQLTLSIPLFAGGATQSRVRQAIAQRDIQQDNYEQNKRTLNRNTRNAYQNMIAGISEVEARRLAVVSAQAALDASQVGLEVGTRTLLDVVQNQRILFSVRQAYVQARYNFLQNRLLLSQNSGTLSIEDVQEINQLLTADSERKL
>NC_010513.1|WP_012338111.1|2264737_2265490_-|UDP-2,3-diacylglucosamine-diphosphatase
MTTLIISDLHLDPLRPVVTELFLRFLREQVSGADALYILGDLFEVWIGDDMPSEVADMVAAALRTYADAGTPLYFMPGNRDFLVGADYAARAGFRILPDPCVVDLYGEPTLLLHGDLLCTDDIAYQAFRAQTRDPEFIAQFLTQTLSARLAFSQQARLASHAHQSGLKQENDSTQFEKITDVVPADVAAMFACYGVNRMIHGHTHRPALHMLQVAECACTRVVLGDWYQQGSVLCVDADGLVLEQLLLPG
>NC_010513.1|WP_076613195.1|2265611_2265842_+|hypothetical-protein
MTGSGNDYHIILGKHAANPRHTKKINGMGSLYIFQLAPLFKAGNTPERICIVRKIEHHHAPTTRINTPAPLAFVVT
>NC_010513.1|WP_031345908.1|2266229_2267756_-|exopolyphosphatase
MPNTLPSYPPLKDGDLLAAIDLGSNSFHMVVARYLLGQLHVVDRLREAVRIADGLDAKGGLSSKACERALECLARFGQRLRNMPSPHVRALATNTVRRLRSPQAFLVLAETALGHSIEVVSGREEARLIYLGVAHAQPPRLDQHRLVIDIGGGSTEFIIGKGFEPLERESLQVGCIASTRRFFPEGKLSKKRWNDALTEIGTEFQQFAAQYNVLGWQEALGSSGTHKTIAKICTEMKLAKGEITAEALPVLREELLKAKRIEDIHLPGLSAHRRPIIAGGILVLEAVFQTLGLEKLLVSKAAMREGILYDMLGRAGDNDPRDTSVAVLMHRYAIDEQQALRVETTAQLLFQQACGPWALDADDARVLCWAARLHELGLVIAHSHYHVHGSYVLEHSDIAGFSRQEQQVLAVLVCTHRRHVSKNAFDVLPDRLRVSVRRRAALLRLAALLHRAREPDWVPTLNLHVDGDVLMLTVPKGCLASRPLLHSDLNAEVEAMVDLGIVFKLSVV
>NC_010513.1|WP_027700130.1|2267824_2269921_-|polyphosphate-kinase-1
MSKSSPIEPVSASDVSQQFRDPGLYLNRELSQLDFNFRVLAQALDEQVPLLERLRFLCISCTNLDEFFEIRVATVRHAQEFGLPPAPDGMRPTVILNAVHDLTTKLVHDQYNCWNQVLCPALAALGVGVLSHNSWNVRQKRWLRGYFRNEIMPVLSPLGLDPAHPFPKIFNKTLNIVVVLNGIDAFGRAGHLAIVRAPRSLPRIIELPQHLSRDGSQNFVFLSSVLSAFVGELFPGMVVKGAYQFRVTRNSELVVDEDEVENLALALRNELVTRGYRLAVRLEIAEDCPIPIVRTLLQNFGLQENAVYRINGPVNLSRVSQVYDMVLRPELKYPPFNPRTVRNSDHIFEIIAKGDVLLYHPYDAFTAVLDLLRQAAADPDVLAIKQTLYRTGKDSTIVDALIQAARSGKDVTVVVELRARFDEEANLGLADKLQEAGVQVVYGVVGYKTHAKMLLIVRREGRKLRRYVHLGTGNYHSGTARIYTDLSLMTANAAIGKDVHQLFLQLSGLAPKMKLECLLQSPFTLHAGVLFRIERETTFARKGRPARIVAKMNALNEPQVVRALYVASQAGVQIDLIVRGACTLRPGVQGISENIRVRSIVGRFLEHSRVYWFANNGTPELFCASADWLERNLLRRVEICFPILNPDLAKRIYSDVLQSYLDDNLNAWELGSDGVYRKLLPETDHAPYSAQAALLESL
>NC_010513.1|WP_004084660.1|2271379_2272075_-|phosphate-regulon-transcriptional-regulator-PhoB
MQKRVLIVDDEVAIRDMVAFALRKGEFESLQASDAREAQAVIADCVPDLILLDWMLPGTSGLELTRRWRKASLTREIPIIMLTARSEENDRVGGLEAGVDDYMVKPFSARELLARIRAVMRRTRDDEEDGSVAIGKLRIDGAAHRVYAGHVQVPIGPTEYRLLHFFMTHSERVYSRTQLLDHVWGSGVYIEERTIDVHIRRLRRTLEPFGLDDMVQTVRSAGYRFSGAIQI
>NC_010513.1|WP_038260098.1|2272157_2273786_-|M48-family-metallopeptidase
MRRLSLAIATALVLPLGGIGLNAQESRLPDIGSSAGQLLTPARQAEYGKLMMAELRNYGYVLEDPLLQGWLQSIGEHLAANSDQPHQLFTFVLLKERQINAFATLGGYVAVNSGLLLTAEREDEVAAVLSHEIMHINQKHVLRSVERAQRDQIPILLGMLAAVIAAQHVGGNSSGDATMAGITSAMGLMQQRQINYTRSNEAEADRLGIHTLARSGYDLEAMAGFFERMSLVTRGNSGGDQAPDYLQTHPVTVTRISEAKARAEQLKKQKGLTGGEVDLMSRERLNLHHVFPGVPANPLLPKVLQPAYSELSRGPSGQFGWAKERLRVLSAKSPESALREYEALRRNTKGGLNDFQRYGMALAKFRNGSNLDEVMHEFRTLLEVHPNNVWLASALAQTQARAGQRHEAGERFDALLRRLSGQRAVVLMYAEMLNEGGNLQDGKRAQALLLPLLRQLSEDALFQQTFARSCELAGATARASEAYAEAAFLNGRPEQALIQLQALKKENLDYVTRARVDARIAAITPAVLEMRRQGIRDPDLDR
>NC_010513.1|WP_004084662.1|2273904_2274210_+|glutaredoxin-3
MKQDSTRDEAGSTPKITIYSTAICPYCVAAKNFLKSKGYTWTEIMINVNSAEREKMIALTQRTSVPQIFVGDTHVGGYDDMMALHHAGKLEPLLTNHSPQG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

382267 : 507095

109

Escherichia_phage(20.93%)

tRNA,tail,terminase,protease,plate,portal,integrase,holin,capsid

attL 427334:427354|attR 517479:517499

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011097581.1\|382267_382765_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYZ2	Pandoravirus	3.7e-06	36.0
WP_049756302.1\|382772_383255_-	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA
WP_012337622.1\|383454_384831_+	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_004085229.1\|385342_386107_-	arginyltransferase	NA	NA	NA	NA
WP_004085228.1\|386530_387022_-	hypothetical protein	NA	NA	NA	NA
WP_049756303.1\|387025_387877_-	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_004085334.1\|388791_389121_-	hypothetical protein	NA	NA	NA	NA
WP_193329298.1\|390246_393105_+	S8 family serine peptidase	NA	NA	NA	NA
WP_128283824.1\|393193_393451_+	hypothetical protein	NA	NA	NA	NA
WP_004085225.1\|394404_396387_-	CocE/NonD family hydrolase	NA	NA	NA	NA
WP_004085224.1\|397041_399633_-	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_004085223.1\|401554_404581_+	TonB-dependent receptor	NA	NA	NA	NA
WP_012337628.1\|404686_406129_-	adenosylhomocysteinase	S4W1G4	Pandoravirus	1.5e-47	31.1
WP_021358468.1\|407278_408586_+	acyl-CoA synthetase	NA	NA	NA	NA
WP_004085220.1\|409456_410161_-	ribonuclease HII	D2TEQ2	Emiliania_huxleyi_virus	1.0e-25	38.3
WP_004085219.1\|410217_411375_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_011097591.1\|411451_412243_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_004085217.1\|412264_412747_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_004085216.1\|412743_413760_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_012337629.1\|413947_416302_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_004085214.1\|416400_417735_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_031345876.1\|417761_418952_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_004085212.1\|418948_419803_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_004085211.1\|419799_420567_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	1.6e-16	34.8
WP_004089320.1\|420569_421127_-	ribosome recycling factor	NA	NA	NA	NA
WP_004085207.1\|423500_424181_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_004085206.1\|424292_424613_+	DUF1820 family protein	NA	NA	NA	NA
WP_004085205.1\|425823_426555_-	UMP kinase	NA	NA	NA	NA
WP_004085344.1\|426999_427248_+	hypothetical protein	NA	NA	NA	NA
427334:427354	attL	NA	NA	NA	NA
WP_004085204.1\|427947_428607_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_004085203.1\|428703_430620_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_004085202.1\|430718_431438_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_004085201.1\|431434_432448_-	glucokinase	NA	NA	NA	NA
WP_021358465.1\|432444_433878_-	glucose-6-phosphate dehydrogenase	A0A222YYZ2	Synechococcus_phage	5.8e-68	34.2
WP_012337631.1\|434206_435301_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.1e-25	32.0
WP_004085198.1\|435445_436249_-	folate-binding protein YgfZ	NA	NA	NA	NA
WP_004085343.1\|436561_436780_+	DUF1674 domain-containing protein	NA	NA	NA	NA
WP_021358463.1\|436837_437260_+	succinate dehydrogenase, cytochrome b556 subunit	NA	NA	NA	NA
WP_004085197.1\|437256_437640_+	succinate dehydrogenase, hydrophobic membrane anchor protein	NA	NA	NA	NA
WP_004085196.1\|437647_439438_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA
WP_004085195.1\|439458_440244_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_004085194.1\|440364_440613_+	succinate dehydrogenase assembly factor 2	NA	NA	NA	NA
WP_012337633.1\|440635_441016_+	hypothetical protein	NA	NA	NA	NA
WP_004085192.1\|441041_442283_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
WP_004085191.1\|442275_442998_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	1.6e-34	37.2
WP_012337634.1\|443345_445823_+	DNA internalization-related competence protein ComEC/Rec2	M1PSD2	Streptococcus_phage	1.4e-05	34.3
WP_004085189.1\|445807_446470_+	MotA/TolQ/ExbB proton channel family protein	NA	NA	NA	NA
WP_004089267.1\|446474_446912_+	biopolymer transporter ExbD	NA	NA	NA	NA
WP_004085187.1\|446929_448678_+	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	5.7e-49	28.8
WP_004085186.1\|448674_449694_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_012337635.1\|450068_451151_-	phage late control D family protein	A0A088FRU7	Escherichia_phage	5.7e-92	45.6
WP_004085341.1\|451141_451360_-\|tail	tail protein X	A0A1W6JT40	Escherichia_phage	3.1e-13	50.0
WP_012337636.1\|451356_451839_-\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	8.9e-29	47.6
WP_012337637.1\|451835_454055_-\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	6.0e-104	47.1
WP_012337638.1\|454181_454469_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.4e-13	44.6
WP_012337639.1\|454471_454981_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	5.3e-48	53.3
WP_012337640.1\|454980_456159_-\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	2.9e-134	55.0
WP_012337641.1\|456222_457815_-\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	5.4e-83	36.1
WP_012337642.1\|457822_458380_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	7.3e-51	53.3
WP_012337643.1\|458372_459266_-\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	2.3e-70	46.4
WP_004088650.1\|459265_459604_-	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	2.4e-33	61.3
WP_004087027.1\|459711_459993_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_004087025.1\|460004_460304_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.2e-15	49.4
WP_004085174.1\|460360_460642_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	1.6e-14	45.2
WP_012337645.1\|460652_460928_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_012337646.1\|460932_461520_-\|plate	phage baseplate assembly protein V	R4JMH2	Burkholderia_phage	1.8e-23	36.5
WP_012337647.1\|461516_462059_-	hypothetical protein	A0A1W6JT55	Escherichia_phage	6.9e-38	42.6
WP_012337648.1\|462034_462556_-	hypothetical protein	D5LGZ7	Escherichia_phage	9.6e-13	34.5
WP_012337649.1\|462552_462876_-	hypothetical protein	NA	NA	NA	NA
WP_012337650.1\|462875_463136_-	hypothetical protein	NA	NA	NA	NA
WP_012337651.1\|463153_465028_-\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	1.3e-163	48.6
WP_012337652.1\|465024_466611_-\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	1.2e-130	50.6
WP_012337653.1\|466607_467156_-	hypothetical protein	V5YTG8	Pseudomonas_phage	4.4e-40	51.7
WP_012337654.1\|467159_469112_-\|terminase	phage terminase large subunit family protein	A0A088FQV3	Escherichia_phage	6.4e-251	66.9
WP_012337655.1\|469104_469680_-\|terminase	terminase small subunit	A0A193GYK5	Enterobacter_phage	9.5e-46	58.0
WP_012337656.1\|469810_470035_-	hypothetical protein	NA	NA	NA	NA
WP_012337657.1\|470036_470498_-	hypothetical protein	NA	NA	NA	NA
WP_012337658.1\|470487_470817_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_012337659.1\|470809_471310_-	lysozyme	A0A1B1UZH2	Plesiomonas_phage	3.3e-26	51.1
WP_012337660.1\|471409_472141_-	site-specific DNA-methyltransferase	A0A2P1CGF5	Mycobacterium_phage	4.6e-61	50.9
WP_004085025.1\|472330_472666_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_004089517.1\|472662_472917_-	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_012337661.1\|472969_473692_-	hypothetical protein	C8CLH7	Xylella_phage	3.0e-105	82.1
WP_162010044.1\|473634_473982_-	hypothetical protein	NA	NA	NA	NA
WP_012337663.1\|475434_475713_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	3.6e-43	95.6
WP_012337664.1\|475714_476020_-	hypothetical protein	NA	NA	NA	NA
WP_012337665.1\|476104_477523_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	1.7e-269	96.6
WP_012337666.1\|477519_477765_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.2e-29	80.5
WP_012337667.1\|477764_478784_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	2.2e-170	89.7
WP_004085684.1\|479560_480202_+	ParA family protein	A0A142F1W4	Mycobacterium_phage	3.4e-12	40.7
WP_004085683.1\|480229_480706_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_004085682.1\|480710_481283_+	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_038231298.1\|481279_483238_+	phospholipase D family protein	NA	NA	NA	NA
WP_071869548.1\|484221_484614_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004085680.1\|485900_486386_-	asparaginase	NA	NA	NA	NA
WP_004085679.1\|486628_487228_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_004085726.1\|487629_487773_+	hypothetical protein	NA	NA	NA	NA
WP_004085678.1\|487802_488987_+	nicotinate phosphoribosyltransferase	A0A2L0UZQ6	Agrobacterium_phage	1.4e-51	34.3
WP_004085677.1\|489175_489751_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_004089989.1\|491104_491398_-	DUF2782 domain-containing protein	NA	NA	NA	NA
WP_004085676.1\|491482_494254_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	3.7e-63	29.3
WP_012337670.1\|494910_495624_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_031345756.1\|495821_496946_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	A0A0P0IKJ1	Acinetobacter_phage	1.8e-08	25.1
WP_004085673.1\|497144_500387_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_027700071.1\|500395_500860_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_004085671.1\|500867_501788_+	hypothetical protein	NA	NA	NA	NA
WP_012337671.1\|501790_503599_+	single-stranded-DNA-specific exonuclease RecJ	NA	NA	NA	NA
WP_100206163.1\|504266_505391_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	1.2e-07	44.8
WP_004085668.1\|505574_507095_+\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	5.0e-86	40.1
517479:517499	attR	NA	NA	NA	NA

DBSCAN-SWA_2

966066 : 990171

Xylella_phage(70.0%)

integrase,holin

attL 956268:956281|attR 971614:971627

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
956268:956281	attL	NA	NA	NA	NA
WP_021358572.1\|966066_967434_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	2.9e-109	46.6
WP_004083658.1\|967965_969375_+	class II fumarate hydratase	NA	NA	NA	NA
WP_004083657.1\|969526_970546_-\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.5e-171	90.0
WP_049756312.1\|970853_971294_+	SocA family protein	K4NZT7	Burkholderia_phage	9.9e-11	33.3
WP_012337787.1\|971390_971933_-	pilin	NA	NA	NA	NA
971614:971627	attR	NA	NA	NA	NA
WP_004084093.1\|972172_972526_-	hypothetical protein	C8CLJ8	Xylella_phage	3.4e-22	54.7
WP_004083654.1\|972522_973305_-	hypothetical protein	C8CLJ7	Xylella_phage	4.5e-91	66.0
WP_041572637.1\|973338_974223_-	hypothetical protein	C8CLJ3	Xylella_phage	1.0e-83	58.9
WP_080513455.1\|974212_974602_-	hypothetical protein	C8CLJ3	Xylella_phage	1.2e-28	61.2
WP_004083651.1\|975042_976254_-	hypothetical protein	C8CLJ2	Xylella_phage	1.6e-119	61.7
WP_012337788.1\|976257_977013_-	hypothetical protein	C8CLJ1	Xylella_phage	2.7e-56	72.5
WP_004084211.1\|977062_977308_-	hypothetical protein	C8CLJ0	Xylella_phage	1.0e-28	80.6
WP_004083648.1\|978942_979350_-	hypothetical protein	C8CLI8	Xylella_phage	2.5e-32	60.3
WP_004083647.1\|979353_980583_-	hypothetical protein	C8CLI7	Xylella_phage	3.0e-166	71.8
WP_004083646.1\|980620_981478_-	hypothetical protein	C8CLI6	Xylella_phage	1.7e-46	49.3
WP_004083645.1\|981497_983519_-	hypothetical protein	C8CLI5	Xylella_phage	3.2e-298	77.7
WP_004083644.1\|983521_984940_-	DNA packaging protein	C8CLI4	Xylella_phage	3.0e-234	80.6
WP_021358615.1\|984845_985172_-	hypothetical protein	C8CLI3	Xylella_phage	3.1e-33	63.9
WP_004083643.1\|985922_986276_-	hypothetical protein	NA	NA	NA	NA
WP_004083642.1\|986277_986592_-\|holin	phage holin family protein	A0A172PZR6	Pseudomonas_phage	6.2e-07	32.3
WP_012337789.1\|986584_987079_-	lysozyme	A0A2I7RLY1	Vibrio_phage	2.6e-28	53.8
WP_004083639.1\|987178_987700_-	site-specific DNA-methyltransferase	A0A097EWK8	Mycobacterium_phage	8.6e-38	53.2
WP_038260243.1\|987684_990171_+	VWA domain-containing protein	A0A2D2W222	Stenotrophomonas_phage	3.8e-59	31.1

DBSCAN-SWA_3

1174994 : 1250967

Xylella_phage(32.61%)

tRNA,tail,terminase,protease,plate,portal,integrase,holin,capsid

attL 1167027:1167043|attR 1260064:1260080

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1167027:1167043	attL	NA	NA	NA	NA
WP_012337837.1\|1174994_1175825_+\|integrase	site-specific integrase	Q7Y5X7	Haemophilus_phage	1.4e-61	46.0
WP_012337838.1\|1176367_1176718_+	hypothetical protein	Q38057	Xanthomonas_phage	2.4e-07	53.1
WP_021358687.1\|1176777_1177089_+	hypothetical protein	NA	NA	NA	NA
WP_012337836.1\|1177837_1179166_-	hypothetical protein	Q4LAU4	Stenotrophomonas_phage	1.7e-114	50.5
WP_021358671.1\|1179165_1179495_-	hypothetical protein	NA	NA	NA	NA
WP_012337835.1\|1179507_1180803_-	hypothetical protein	Q94MX3	Xanthomonas_phage	7.7e-19	47.7
WP_004084291.1\|1180930_1181059_-	hypothetical protein	NA	NA	NA	NA
WP_012337834.1\|1181078_1181330_-	hypothetical protein	NA	NA	NA	NA
WP_012337833.1\|1181454_1181766_-	hypothetical protein	NA	NA	NA	NA
WP_012337841.1\|1181806_1182982_-	replication initiation factor domain-containing protein	S0F3F7	Stenotrophomonas_phage	8.7e-78	45.8
WP_012337830.1\|1183629_1183812_-	hypothetical protein	NA	NA	NA	NA
WP_004085576.1\|1184980_1185673_-	7-cyano-7-deazaguanine synthase QueC	A0A2I2L6M4	Escherichia_phage	6.5e-25	38.5
WP_012337842.1\|1186192_1187962_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA
WP_031345926.1\|1188156_1189674_-	fumarate hydratase	NA	NA	NA	NA
WP_012337844.1\|1189915_1191523_-\|protease	carboxyl-terminal processing protease	NA	NA	NA	NA
WP_012337845.1\|1191615_1193217_-\|protease	carboxyl-terminal processing protease	A0A0R6PIZ1	Moraxella_phage	3.5e-05	27.8
WP_012337846.1\|1193374_1193698_-	hypothetical protein	NA	NA	NA	NA
WP_012337847.1\|1194458_1197356_-	S8 family serine peptidase	NA	NA	NA	NA
WP_012337848.1\|1197940_1198183_-	hypothetical protein	NA	NA	NA	NA
WP_004085584.1\|1198160_1198742_-	DNA topoisomerase III	NA	NA	NA	NA
WP_004084849.1\|1198786_1199836_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_004084850.1\|1199828_1201256_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA
WP_004084854.1\|1203244_1204696_-	ammonium transporter	NA	NA	NA	NA
WP_004084855.1\|1204685_1205024_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_004084856.1\|1205278_1206688_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_010894307.1\|1206911_1207697_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_004084858.1\|1207864_1208578_-	polyisoprenoid-binding protein	NA	NA	NA	NA
WP_004084859.1\|1209036_1209996_+	mitochondrial fission ELM1 family protein	NA	NA	NA	NA
WP_012337635.1\|1210794_1211877_-	phage late control D family protein	A0A088FRU7	Escherichia_phage	5.7e-92	45.6
WP_004085341.1\|1211867_1212086_-\|tail	tail protein X	A0A1W6JT40	Escherichia_phage	3.1e-13	50.0
WP_012337636.1\|1212082_1212565_-\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	8.9e-29	47.6
WP_012337637.1\|1212561_1214781_-\|tail	phage tail tape measure protein	V5YUN9	Pseudomonas_phage	6.0e-104	47.1
WP_012337638.1\|1214907_1215195_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.4e-13	44.6
WP_012337639.1\|1215197_1215707_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	5.3e-48	53.3
WP_012337640.1\|1215706_1216885_-\|tail	phage tail sheath family protein	A0A088FVH5	Escherichia_phage	2.9e-134	55.0
WP_012337641.1\|1216948_1218541_-\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	5.4e-83	36.1
WP_012337642.1\|1218548_1219106_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	7.3e-51	53.3
WP_012337643.1\|1219098_1219992_-\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	2.3e-70	46.4
WP_004088650.1\|1219991_1220330_-	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	2.4e-33	61.3
WP_004087027.1\|1220437_1220719_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_004087025.1\|1220730_1221030_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	1.2e-15	49.4
WP_004085174.1\|1221086_1221368_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LQB1	Mannheimia_phage	1.6e-14	45.2
WP_012337645.1\|1221378_1221654_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_012337646.1\|1221658_1222246_-\|plate	phage baseplate assembly protein V	R4JMH2	Burkholderia_phage	1.8e-23	36.5
WP_012337647.1\|1222242_1222785_-	hypothetical protein	A0A1W6JT55	Escherichia_phage	6.9e-38	42.6
WP_012337648.1\|1222760_1223282_-	hypothetical protein	D5LGZ7	Escherichia_phage	9.6e-13	34.5
WP_012337649.1\|1223278_1223602_-	hypothetical protein	NA	NA	NA	NA
WP_012337650.1\|1223601_1223862_-	hypothetical protein	NA	NA	NA	NA
WP_012337651.1\|1223879_1225754_-\|capsid	phage major capsid protein	V5YSS9	Pseudomonas_phage	1.3e-163	48.6
WP_012337652.1\|1225750_1227337_-\|portal	phage portal protein	A0A088FVG5	Escherichia_phage	1.2e-130	50.6
WP_012337653.1\|1227333_1227882_-	hypothetical protein	V5YTG8	Pseudomonas_phage	4.4e-40	51.7
WP_012337654.1\|1227885_1229838_-\|terminase	phage terminase large subunit family protein	A0A088FQV3	Escherichia_phage	6.4e-251	66.9
WP_012337655.1\|1229830_1230406_-\|terminase	terminase small subunit	A0A193GYK5	Enterobacter_phage	9.5e-46	58.0
WP_012337656.1\|1230536_1230761_-	hypothetical protein	NA	NA	NA	NA
WP_012337657.1\|1230762_1231224_-	hypothetical protein	NA	NA	NA	NA
WP_012337658.1\|1231213_1231543_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_012337849.1\|1231535_1232036_-	lysozyme	I2GUG4	Acinetobacter_phage	8.6e-27	51.4
WP_012337850.1\|1232002_1232620_-	hypothetical protein	A0A1W6JT18	Escherichia_phage	2.6e-25	47.9
WP_021358648.1\|1232653_1232851_-	hypothetical protein	NA	NA	NA	NA
WP_012337851.1\|1233317_1235846_-	primase	C8CLH6	Xylella_phage	0.0e+00	75.4
WP_012337852.1\|1235982_1236564_-	Bro-N domain-containing protein	C8CLH5	Xylella_phage	1.5e-30	60.4
WP_012337854.1\|1236823_1237207_-	hypothetical protein	C8CLH2	Xylella_phage	3.6e-57	89.7
WP_021358651.1\|1237294_1237624_-	hypothetical protein	NA	NA	NA	NA
WP_012337855.1\|1237613_1237859_-	hypothetical protein	NA	NA	NA	NA
WP_021358652.1\|1237857_1238637_+	helix-turn-helix transcriptional regulator	D0UIL9	Aggregatibacter_phage	7.4e-09	27.2
WP_004087040.1\|1238687_1239299_-	Fic family protein	NA	NA	NA	NA
WP_004087046.1\|1239295_1239484_-	antitoxin VbhA family protein	NA	NA	NA	NA
WP_012337857.1\|1239864_1240269_+	hypothetical protein	C8CLG9	Xylella_phage	1.4e-11	38.7
WP_012337858.1\|1240265_1240727_+	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_012337859.1\|1240723_1241131_+	hypothetical protein	C8CLG7	Xylella_phage	8.2e-52	79.3
WP_004086069.1\|1241127_1241319_+	hypothetical protein	NA	NA	NA	NA
WP_012337860.1\|1241350_1241920_-	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	3.3e-99	96.7
WP_004085029.1\|1242004_1242409_+	hypothetical protein	NA	NA	NA	NA
WP_012337663.1\|1242410_1242689_-	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	3.6e-43	95.6
WP_012337861.1\|1242685_1244866_-	DNA polymerase	C8CLG0	Xylella_phage	0.0e+00	94.9
WP_031345946.1\|1244867_1246034_-	Bro-N domain-containing protein	C8CLG1	Xylella_phage	2.0e-159	76.6
WP_012337863.1\|1246120_1246687_-	DUF2815 family protein	C8CLG2	Xylella_phage	8.6e-100	94.7
WP_012337864.1\|1246686_1247964_-	DUF2800 domain-containing protein	C8CLG3	Xylella_phage	5.0e-228	93.4
WP_012337865.1\|1247960_1248458_-	hypothetical protein	C8CLG4	Xylella_phage	1.0e-51	94.7
WP_004086187.1\|1248447_1248642_-	hypothetical protein	C8CLG5	Xylella_phage	1.6e-26	98.4
WP_012337666.1\|1249702_1249948_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.2e-29	80.5
WP_012337868.1\|1249947_1250967_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	6.6e-167	87.0
1260064:1260080	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1349286 : 1393444

Haemophilus_phage(25.0%)

tail,terminase,plate,integrase,holin,head

attL 1379688:1379704|attR 1396470:1396486

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012337886.1\|1349286_1350162_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-08	24.8
WP_004084992.1\|1350158_1351127_+	hypothetical protein	NA	NA	NA	NA
WP_004084994.1\|1351385_1351832_+	hypothetical protein	NA	NA	NA	NA
WP_012337887.1\|1351935_1353180_-\|tail	tail fiber protein	A4PE46	Ralstonia_virus	2.6e-08	32.0
WP_004084996.1\|1353183_1353744_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	8.5e-07	26.8
WP_012337888.1\|1353740_1354886_-\|plate	baseplate J/gp47 family protein	D0UIH5	Aggregatibacter_phage	2.5e-98	49.7
WP_012337889.1\|1354978_1355332_-	hypothetical protein	Q7Y5S5	Haemophilus_phage	5.7e-25	50.4
WP_012337890.1\|1355328_1355970_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.3e-31	38.1
WP_004085000.1\|1355966_1356797_-	hypothetical protein	D0UIH8	Aggregatibacter_phage	6.8e-77	51.5
WP_004085001.1\|1356793_1357111_-	hypothetical protein	NA	NA	NA	NA
WP_012337891.1\|1357110_1357881_-	hypothetical protein	Q7Y5T0	Haemophilus_phage	9.8e-30	35.2
WP_004091377.1\|1357991_1358219_+	hypothetical protein	NA	NA	NA	NA
WP_004087087.1\|1358202_1358469_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5S8E8	Streptococcus_phage	2.3e-15	41.9
WP_012337892.1\|1358479_1360369_-	hypothetical protein	D0UII2	Aggregatibacter_phage	1.8e-24	28.0
WP_014607750.1\|1360325_1360490_-	hypothetical protein	NA	NA	NA	NA
WP_012337893.1\|1360516_1360939_-	hypothetical protein	NA	NA	NA	NA
WP_004085006.1\|1360935_1361373_-	DUF3277 family protein	Q7Y5T4	Haemophilus_phage	2.0e-43	61.0
WP_012337894.1\|1361382_1362879_-	DUF3383 domain-containing protein	Q7Y5T5	Haemophilus_phage	1.1e-125	48.2
WP_004085008.1\|1362879_1363413_-	hypothetical protein	NA	NA	NA	NA
WP_012337896.1\|1363336_1363717_-	hypothetical protein	Q776V7	Haemophilus_phage	6.5e-19	40.4
WP_012337897.1\|1363691_1364171_-	hypothetical protein	M4SN98	Psychrobacter_phage	7.8e-09	29.3
WP_012337898.1\|1364167_1364539_-	DUF4054 domain-containing protein	Q7Y5T9	Haemophilus_phage	1.5e-12	37.4
WP_012337899.1\|1364541_1364841_-	hypothetical protein	NA	NA	NA	NA
WP_012337900.1\|1364904_1365888_-	DUF2184 domain-containing protein	A0A2R3UA82	Siphoviridae_environmental_samples	3.2e-49	38.7
WP_012337901.1\|1365897_1366380_-	hypothetical protein	NA	NA	NA	NA
WP_012337902.1\|1366389_1367598_-	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	3.3e-40	42.2
WP_021358621.1\|1367597_1368443_-\|head	phage head morphogenesis protein	Q7Y5U5	Haemophilus_phage	1.6e-28	33.5
WP_031345929.1\|1369784_1371335_-\|terminase	phage terminase large subunit	H9C0C7	Vibrio_phage	3.5e-111	44.4
WP_012337905.1\|1371285_1371684_-	hypothetical protein	NA	NA	NA	NA
WP_004085111.1\|1371775_1371988_-	hypothetical protein	NA	NA	NA	NA
WP_012337906.1\|1371989_1372451_-	hypothetical protein	NA	NA	NA	NA
WP_004086918.1\|1372440_1372770_-\|holin	phage holin family protein	A0A172PZR6	Pseudomonas_phage	5.7e-19	44.0
WP_012337907.1\|1372762_1373263_-	lysozyme	A0A1B1UZH2	Plesiomonas_phage	1.9e-26	51.1
WP_012337908.1\|1373428_1374127_-	hypothetical protein	C8CLH7	Xylella_phage	2.3e-102	84.3
WP_031345921.1\|1374255_1374666_-	hypothetical protein	NA	NA	NA	NA
WP_021358588.1\|1375030_1376896_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_004085711.1\|1376892_1377528_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_004085709.1\|1378277_1378736_-	hypothetical protein	NA	NA	NA	NA
WP_004085707.1\|1378943_1379441_-	hypothetical protein	NA	NA	NA	NA
1379688:1379704	attL	NA	NA	NA	NA
WP_004085705.1\|1380064_1381069_+	porphobilinogen synthase	NA	NA	NA	NA
WP_012337912.1\|1381629_1382013_-	VOC family protein	NA	NA	NA	NA
WP_004085734.1\|1382166_1382499_-	DUF2913 family protein	NA	NA	NA	NA
WP_004085701.1\|1383354_1384689_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_027700580.1\|1384783_1385638_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_004085698.1\|1386129_1386903_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_004085697.1\|1386899_1387364_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_004085696.1\|1387525_1387864_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.0e-07	54.9
WP_004085695.1\|1387850_1388111_-	BrnT family toxin	K4NX81	Burkholderia_phage	5.7e-06	40.7
WP_012337913.1\|1388326_1388998_-	hypothetical protein	C8CLH7	Xylella_phage	6.6e-99	84.2
WP_021358593.1\|1389126_1389588_-	hypothetical protein	A0A088F6Y8	Sulfitobacter_phage	2.7e-11	43.0
WP_004085691.1\|1389584_1390349_-	hypothetical protein	NA	NA	NA	NA
WP_012337914.1\|1391029_1391545_-	hypothetical protein	NA	NA	NA	NA
WP_004085686.1\|1391918_1392158_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_012337915.1\|1392176_1392425_+	DUF4224 domain-containing protein	C8CLF5	Xylella_phage	1.6e-34	85.4
WP_012337916.1\|1392424_1393444_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	8.4e-170	88.8
1396470:1396486	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1550388 : 1556522

Xylella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004083461.1\|1550388_1550685_-	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	3.4e-07	48.1
WP_004084124.1\|1550681_1550996_-	hypothetical protein	C8CLF7	Xylella_phage	1.9e-32	94.7
WP_012337663.1\|1552615_1552894_+	VRR-NUC domain-containing protein	C8CLF9	Xylella_phage	3.6e-43	95.6
WP_004085897.1\|1552895_1553342_-	hypothetical protein	NA	NA	NA	NA
WP_004085894.1\|1553426_1554839_+	DEAD/DEAH box helicase	C8CLF7	Xylella_phage	2.7e-227	96.2
WP_012337962.1\|1555190_1555922_+	site-specific DNA-methyltransferase	A0A2P1CGF5	Mycobacterium_phage	4.6e-61	50.9
WP_012337659.1\|1556021_1556522_+	lysozyme	A0A1B1UZH2	Plesiomonas_phage	3.3e-26	51.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010513

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection