CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010519	Histophilus somni 2336, complete sequence	1 crisprs	cas14j,cas3,RT,DEDDh,DinG	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010519_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010519_1

1197210-1197298

Orphan

Consensus_repeat	Method
CCACATTTGCCTTCGGCAGATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010519_1

>merge|NC_010519|1|1197210-1197298|CRISPRCasFinder
CCGCACTTTCCTTCGCCACATTTGCCTTCGGCAGATTTCGGCATATTTTTCTTAGGAGCGGTTGCACCGCATTTTCCTTCACCGCATTT

>NC_010519|1|1|1197210-1197298|CRISPRCasFinder
CCGCACTTTCCTTCGCCACATTT	GCCTTCGGCAGATTTCGGCATATTTTTCTTAGGAGCGGTTGCA
CCGCATTTTCCTTCACCGCATTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010519.1\|WP_012340238.1\|1204076_1204961_+\|methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|181852
NC_010519.1\|WP_011609300.1\|1189942_1191208_+\|tagatose-bisphosphate-aldolase-subunit-GatZ	unknown	unknown	gnl\|CDD\|237889
NC_010519.1\|WP_012340237.1\|1203347_1203866_+\|ClbS/DfsB-family-four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|226733
NC_010519.1\|WP_011609296.1\|1193351_1194395_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182371
NC_010519.1\|WP_012340231.1\|1197452_1197911_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NC_010519.1\|WP_012340232.1\|1198045_1200370_-\|formate-C-acetyltransferase	unknown	unknown	gnl\|CDD\|153087
NC_010519.1\|WP_012340235.1\|1201909_1202266_+\|YcfL-family-protein	unknown	unknown	gnl\|CDD\|176923
NC_010519.1\|WP_011609297.1\|1191979_1193338_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|129907
NC_010519.1\|WP_012340225.1\|1191690_1191975_+\|PTS-galactitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|182372
NC_010519.1\|WP_012340224.1\|1188975_1189929_+\|tagatose-1,6-diphosphate-aldolase	unknown	unknown	gnl\|CDD\|237236
NC_010519.1\|WP_012340239.1\|1205690_1208522_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NC_010519.1\|WP_012340233.1\|1200464_1201316_-\|formate-transporter-FocA	unknown	unknown	gnl\|CDD\|274951
NC_010519.1\|WP_011609299.1\|1191220_1191667_+\|PTS-galactitol-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|182023
NC_010519.1\|WP_011609295.1\|1194488_1195280_+\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NC_010519.1\|WP_012340228.1\|1196230_1197151_-\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|225761
NC_010519.1\|WP_012340222.1\|1187970_1188711_-\|pyruvate-formate-lyase-1-activating-protein	unknown	unknown	gnl\|CDD\|182994
NC_010519.1\|WP_012340236.1\|1202272_1203319_+\|beta-N-acetylhexosaminidase	unknown	unknown	gnl\|CDD\|235417
NC_010519.1\|WP_012340234.1\|1201559_1201910_+\|purine-nucleoside-phosphoramidase	unknown	unknown	gnl\|CDD\|182648
NC_010519.1\|WP_011609284.1\|1205047_1205512_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|136097
NC_010519.1\|WP_012340227.1\|1195529_1196246_-\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760

Protein	Function_ID	Function_description	E-value
NC_010519.1\|WP_012340238.1\|1204076_1204961_+\|methylenetetrahydrofolate-reductase	gnl\|CDD\|181852	PRK09432, metF, methylenetetrahydrofolate reductase.	0
NC_010519.1\|WP_011609300.1\|1189942_1191208_+\|tagatose-bisphosphate-aldolase-subunit-GatZ	gnl\|CDD\|237889	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ.	0
NC_010519.1\|WP_012340237.1\|1203347_1203866_+\|ClbS/DfsB-family-four-helix-bundle-protein	gnl\|CDD\|226733	COG4283, COG4283, Uncharacterized conserved protein [Function unknown].	1.12086e-75
NC_010519.1\|WP_011609296.1\|1193351_1194395_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|182371	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase.	0
NC_010519.1\|WP_012340231.1\|1197452_1197911_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.936e-21
NC_010519.1\|WP_012340232.1\|1198045_1200370_-\|formate-C-acetyltransferase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NC_010519.1\|WP_012340235.1\|1201909_1202266_+\|YcfL-family-protein	gnl\|CDD\|176923	cd09030, DUF1425, Putative periplasmic lipoprotein. This bacterial family of proteins contains members described as putative lipoproteins, some are also known as YcfL. The function of this family is unknown. Family members have also been annotated as predicted periplasmic lipoproteins (COG5633), and appear to contain an N-terminal membrane lipoprotein lipid attachment side (pfam08139), which is not included in this alignment model.	1.07943e-18
NC_010519.1\|WP_011609297.1\|1191979_1193338_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|129907	TIGR00827, PTS_system_galactitol-specific_IIC_component, PTS system, galactitol-specific IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The only characterized member of this family of PTS transporters is the E. coli galactitol transporter. Gat family PTS systems typically have 3 components: IIA, IIB and IIC. This family is specific for the IIC component of the PTS Gat family. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS].	0
NC_010519.1\|WP_012340225.1\|1191690_1191975_+\|PTS-galactitol-transporter-subunit-IIB	gnl\|CDD\|182372	PRK10310, PRK10310, PTS galactitol transporter subunit IIB.	2.62937e-53
NC_010519.1\|WP_012340224.1\|1188975_1189929_+\|tagatose-1,6-diphosphate-aldolase	gnl\|CDD\|237236	PRK12858, PRK12858, tagatose 1,6-diphosphate aldolase; Reviewed.	9.15789e-176
NC_010519.1\|WP_012340239.1\|1205690_1208522_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NC_010519.1\|WP_012340233.1\|1200464_1201316_-\|formate-transporter-FocA	gnl\|CDD\|274951	TIGR04060, formate_focA, formate transporter FocA. FocA (formate channel A) forms a pentameric formate-selective channel through the plasma membrane. The focA gene is largely restricted to Proteobacteria and occurs adjacent to genes for pyruvate formate lyase (PFL) and the PFL activase, a radical SAM protein. FocA is homologous to a nitrite transport protein, NirC. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.24585e-158
NC_010519.1\|WP_011609299.1\|1191220_1191667_+\|PTS-galactitol-transporter-subunit-IIA	gnl\|CDD\|182023	PRK09665, PRK09665, PTS galactitol transporter subunit IIA.	8.4176e-86
NC_010519.1\|WP_011609295.1\|1194488_1195280_+\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	5.2957e-87
NC_010519.1\|WP_012340228.1\|1196230_1197151_-\|DUF692-family-protein	gnl\|CDD\|225761	COG3220, COG3220, Uncharacterized protein conserved in bacteria [Function unknown].	3.60293e-138
NC_010519.1\|WP_012340222.1\|1187970_1188711_-\|pyruvate-formate-lyase-1-activating-protein	gnl\|CDD\|182994	PRK11145, pflA, pyruvate formate lyase 1-activating protein.	0
NC_010519.1\|WP_012340236.1\|1202272_1203319_+\|beta-N-acetylhexosaminidase	gnl\|CDD\|235417	PRK05337, PRK05337, beta-hexosaminidase; Provisional.	0
NC_010519.1\|WP_012340234.1\|1201559_1201910_+\|purine-nucleoside-phosphoramidase	gnl\|CDD\|182648	PRK10687, PRK10687, purine nucleoside phosphoramidase; Provisional.	8.22302e-70
NC_010519.1\|WP_011609284.1\|1205047_1205512_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|136097	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional.	2.22199e-90
NC_010519.1\|WP_012340227.1\|1195529_1196246_-\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	1.14527e-70

>NC_010519.1|WP_012340228.1|1196230_1197151_-|DUF692-family-protein
MRQGAGLGYRRDLAEGFLQLRNNDRIQFMEIAPENWLKMGGFARYQFDKVAEKIPMLIHGLSLSLGGQAPLDKELLSGIKAMIKQYNTPFFSDHLSFCECDGHLYDLLPMPFTDEAVKHTAARIREVQDFLEIQISVENTSYYLHSETSTMNEVEFLNAIAQEANCGIHLDVNNIYVNAVNHGLLDPHVFIDNVDLKRVNYIHIAGHDDEHAATEVQIQTSEAFNTIKGDFRHLPQLLVDTHGENVKGTVWDLLEYTYARLPHMPPTLLERDFNFPPFEKLCKEVDIIHHLQQKYVKKRGLSWLKI
>NC_010519.1|WP_012340227.1|1195529_1196246_-|putative-DNA-binding-domain-containing-protein
MAKNLAQTQQEFVQAIREKDPSNHDPRRLNIYVRLLRNNTFGFIEKCFTETPAHLNRQDWDNAKEEFVKNGKAHSPYFQDIAGEFLQFCQHKNIFDENILSLMQFEFDQLQAEVSMFQLPTEFDITEQTPMKCSEVCFIREYPVDFLSTQFNQILNQPSKTIVWRNAQFEVYYQKLTDLDHFLLMLLQEKAYSLQKLKESLKNLAVDENILQFLQQTWYKWIDLGVIIPEQSKEYVTN
>NC_010519.1|WP_011609295.1|1194488_1195280_+|DeoR/GlpR-transcriptional-regulator
MNTFERRHQIIELLKENGIVSVNDLAKRFNVSEVSVRTDLRMLEEQGILTRFHGGAAFSNSNEKPYEKKERNESKETSLEERHGLSHDPKSHIARIAAQLVKEGDTVILDSGSTTLMIAYELLKIKNITVITNNLPAAVVLSDSPDITLVICGGTLRHKTRSMHGTITENSLQGIRADIMFVGADGVDAKIGLTTFNEGYNISSIMADISAKVVAVVDATKFNRNGFNLVLPMQKLDLVITDNSLTKEKQLELISVGVPLQLA
>NC_010519.1|WP_011609296.1|1193351_1194395_+|galactitol-1-phosphate-5-dehydrogenase
MKAIVLESNRNMAICDIPKPLVEDPDDVLVKVHYSGLCGSDIPRIFHHGTHFYPIVLGHEFSATVEEVGSDVTELDKGDLVSCAPLQPCFKCDECNRGFYSLCKNYNFIGSRRFGANSEYLCVKKSNLVKLPQGSDTLQASFIEPITVGLHAIHLAGGCKGKNVVIVGAGTIGLLAAQSTKALGANSVSVIDINQEKLVLAKTLGADYVFNSMDLKADEILACLDGNRFDQLILETAGVPKTVELSIQIAGPRAQVVLVGTLHHDLNLDQKEFGLILRKELIIFGSWMNYSKPWPGVEWREAVNLIAENKICFEPLISSINTIEDYVEEVKSLDGKPMNGKLVLKFD
>NC_010519.1|WP_011609297.1|1191979_1193338_+|PTS-galactitol-transporter-subunit-IIC
MFTEIMQYILDLGPAVMLPLVILILSLALGMKFGESFKAGLSIGIGFVGIGLVIGLMLDSIGPAAKAMAHTFDIQLNVIDLGWPGASPMTWASQTALIAIPIAIAVNIAMLLLKMTRVVNVDIWNIWHMTFTGALVHIATGSYWLGILGVIVHAAFVYKLGDWFSKDTKHFFELDGIAIPHGTSAYLGPVAVLVDTIIEKIPGLNKIHFSADDLQKRFGALGEPVTVGFIMGVVIGLLAGYSMKDVLQLAVKTATIMLLMPRVIKPIMDGLAPIAKQARKKLQARFGGSDFLIGLDPALLLGHTSVVSASLIFIPLTILIAVFLPGNQVLPFGDLATIGFFVAMAVAVHQGNLFRTLISGLIIMSMTLWIATQTIAYHTQLAANAGTLKAGEQVASMDQGGSPITYLMIQVLTFENIVGMTIIAIIYFCGVFLTWRRAKSYEKEIVAQSAQN
>NC_010519.1|WP_012340225.1|1191690_1191975_+|PTS-galactitol-transporter-subunit-IIB
MKKKVIVACGGAVATSTLAAEEIEELCAENNISVELVQCRVNEIGSYINDVDLICTTAKISQIYGDIPIVHGMPFVSGVGIDELKEKILVILRG
>NC_010519.1|WP_011609299.1|1191220_1191667_+|PTS-galactitol-transporter-subunit-IIA
MVSEILIKTGISFENYSEALNHIADELIAKGFVKESYRDAVFAREANFPTGIQLEEHSVAIPHCEAEHSIKPAIYFIRPDKTLVVNRADDDGTVDAEILMALVVTNPQQQLRLLRTLFGKLQDNSFVTQLLSIQESDLSEFLKQHFEI
>NC_010519.1|WP_011609300.1|1189942_1191208_+|tagatose-bisphosphate-aldolase-subunit-GatZ
MQNLLKRHKSGESVGICSVCSAHSAVIEAALRFELNTENDVLIEATSNQVNQFGGYTGMQPVDFKNFVYSIADKVGFPKKRIILGGDHLGPNCWQNEPAEQAMEKAKVLVAEFAKAEFTKIHLDASMSCADDPVPLPPLVVAERAAVLCQAVENALDFANRDKVSYIIGTEVPVPGGETHTISSVDVTTIQSAKETIETHRQAFEALGLQEAFKRIVGIVVQPGVEFDHSNVILYKPELAKDLSAFIESTPYIFEAHSTDYQSRAAYRNLVKDHFAILKVGPALTFALREALFALAKIEDELIIPEKKSYLLDVINQVMQDDPKYWSKYYSPQYSKAIIELHFSLSDRIRYYWPNERINSAVETLIENLSDISIPLGLLSQYLPNQYRLIVDGILKAKPKELIINKIQQVLSDYAFGCYGK
>NC_010519.1|WP_012340224.1|1188975_1189929_+|tagatose-1,6-diphosphate-aldolase
MNESQSKQQRLNKLYGSERVFRALAIDQRGALKRMLGDDISDRQMQEFKSLVSEQLTPYASAILLDPEFGWQAAELKDTNCGLIMAYEKTGYDRTKIGRFPDLIDGISVKQLQEKGADAVKLLLYIDVDEGKEINNVKTAFVERVGSECIAENMPFFLEILTYDSKISDKKEFERLKPRKVIEAMKLFSDKRFNVDVLKVEVPVDMNFVEGFSGQEAIYNQESAAALFKEQSEATHLPFIFLSAGVSPQLFQDTLCFAKQAGSDFNGVLCGRSTWAGSAESFKTGGKEEAIDWLKNDGIKNITELNNVLTKTAKPVF
>NC_010519.1|WP_012340222.1|1187970_1188711_-|pyruvate-formate-lyase-1-activating-protein
MSVLARYHSYESCGTVDGPGIRFILFLQGCLMRCKYCHNRDTWDLHDGKEISVEDLMKEVVTYRHFMNATGGGVTASGGEAVLQAEFVRDWFKACKAEGISTCLDTNGFVRHYDHVIDELLDVTDLVLLDLKQLNDKVHQNLIGVPNKRTLEFAKYLQKRNQKTWIRYVVVPGYTDADEDIHLLGQFIQNMSNIEQVELLPYHQLGAHKWKTMGEQYELEDVVPPTKDSLEHIKSIIESYGHTVKY
>NC_010519.1|WP_012340231.1|1197452_1197911_-|DoxX-family-protein
MSHCHIFKQSTQGLSLLVLRFFVAYEFFEAGLEKWNGENWFYAVKDNFPFPFSILPLDLNWAIATGAELLFPILLVLGIATRFSALGLMILTAVAWATVHSGLGYNVCNNGYKLPLIYIITLLPLLLQGAGVVSLDFLLRKKYSAQKRLNLL
>NC_010519.1|WP_012340232.1|1198045_1200370_-|formate-C-acetyltransferase
MAQLTETQQKAWEGFVGGDWQTEVNVRDFIQKNYTPYEGDEAFLAEATEATSILWADVMEKIKVENKTHEPYDIDTDIPSTITSHKAGYINKDLEKIVGLQTDAPLKRAIMPFGGINMVRGSCKVYRRELNPEVEKIFTEYRKTHNQGVFDVYTPDILRCRKSGVITGLPDAYGRGRIIGDYRRMALYGADFLMKDKFKQFTSLQEKLESGEDIQATIQLREEIAEQHRALGKMKEMAASYGYDISAPAKNAQEAVQWTYFAYLAAVKSQNGAAMSFGRVSTFLDIFIERDLKAGKITEQEAQELIDHLVMKLRMVRFLRTPEYDQLFSGDPMWATETLAGMGLDGRTLVTKTSFRILHTLYTMGPSPEPNLTILWSESLPDGFKRYAAKVSIDTSSVQYENDDLMRPDFQNDDYAIACCVSPMIVGKMMQFFGARANLAKTLLYAINGGIDEKSGDQVGPKTDPITTEYLDYEDVMTRLDSFMDWLAKQYVTALNIIHFMHDKYAYEAALMALHDRDVFRTMACGIAGLSVAADSLSAIKYAKVKPIRGDIEVKNKAGDVIGISKNVAIDFEIEGEYPQFGNNDSRVDDIAVDLVERFMKKIQKLKTYRNATPTQSVLTITSNVVYGKKTGNTPDGRRSGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDIDAQKRNLAGLMDGYFHHETTIEGGQHLNVNVLNREMLLDAVENPDKYPQLTIRVSGYAVRFNSLTKDQQQDVITRTFTTSM
>NC_010519.1|WP_012340233.1|1200464_1201316_-|formate-transporter-FocA
MKTESTTTVASPQEMAQIGENVGVYKATKNQCYSFLSAISAGAFIALAFVFYTTTQTDLGNAPWGLTKLVGGLVFSLGIIMAVVCGSELFTSSTMSLIARVNKRITTTQMLKNWLVVYLGNFVGSLIIVLLIWFAGQTMAANGQWGLTILKTAQHKIHHTWLEAFCLGILCNIMVCIAVWMSYAGKTLTDKAFIMILPIGLFVASGFEHSVANMFMIPMGIITSHASSTDFWQAINLNPLQFADLDIYHFIFKNLIPVTLGNIIGGGVCIALMQWFTNKPHRH
>NC_010519.1|WP_012340234.1|1201559_1201910_+|purine-nucleoside-phosphoramidase
MVEETIFSKIIRKEIPANIVYQDELVTAFRDISPQAPTHILIIPNKIIPTVNDVTSEDEVTLGRLFTVAAKLAEKEGIAQDGYRLIVNCNKHGGQEVYHLHMHLVGGEHLGKMLAK
>NC_010519.1|WP_012340235.1|1201909_1202266_+|YcfL-family-protein
MKNLLIAFILSLGLIACGSLEKVNLVHSQQPIINISTELASDIDVQVSHSSASLTNVSQKQVTLVYYFFWYDKNGVTQGDVTNMKNATMLILSPGQTRQLVLQKPTTESVNYRLYLSL
>NC_010519.1|WP_012340236.1|1202272_1203319_+|beta-N-acetylhexosaminidase
MSILLIDLSGQELRQEEIELLEHPLVAGLILFSRNFYDIEQIRHLIRSVRQKVKKPLLITVDQEGGRVQRFRQGLTQLPAMQSFACLLSDPQEQQEMAWRAGWQMAAEMTALDIDLSFAPVLDLGHQCKAIGDRSFHYEEKKLIELAEKFIQGMRQIGMSATGKHFPGHGHVLADSHLETPYDDRAKELIFAQDIRPFQSLIKQGLLDAVMPAHVIYTQCDNQPASGSSYWLKEVLRQQLGFQGAIFSDDLGMKGAGFMGDFVARCTQSLQAGCDLLLLCNEPEAVVQVLDRFKPQESQNKRIIRQTRLNKLFKKQRIDWQTLRTQRDWLENHKKLTALQQDWLAYKG
>NC_010519.1|WP_012340237.1|1203347_1203866_+|ClbS/DfsB-family-four-helix-bundle-protein
MRVYKNKEELKTEINKAFKKYILEFDNIPETLKDKRVDKVDRTPAENLAYQVGWTSLVLKWEKDERKGLQVKTPSDEFKWNQLGQLYQWFTDTYAHLSLQELKAKLNENINAICTMIDSLSEEELFEPHMRKWADEATKTATWEVYKFIHVNTVAPFGTFRTKVRKWKKTAL
>NC_010519.1|WP_012340238.1|1204076_1204961_+|methylenetetrahydrofolate-reductase
MSYTKELDTLNHHMVDINGKINVSFEFFPPKNEKMETLLWDSIHRLKVLKPKFVSVTYGANSGERDRTHTVVKRIKQETGLEAAPHLTGIDATPEELKAIAKDYWDGGIRRIVALRGDEPKGYIKKPFYASDLVELLRSVADFDISVAAYPEVHPEAKSAQADLINLKRKIDAGANLVITQFFFDVDSYLRFRDRCASIGIDAEIVPGILPVTNFKQLQKMAAITNVKIPSWMAKMYEGLDDDQTTRNLVAASIAMDMVKVLSCEGVKDFHFYTLNRSELSYAICHTLGVRPSL
>NC_010519.1|WP_011609284.1|1205047_1205512_-|single-stranded-DNA-binding-protein
MAGVNKVIIVGNLGNAPEIRTMPNGDAVANISVATSESWIDKNTNERREITEWHRIVFYRRQAEVAGEYLRKGSKVYVEGRLRTRKWQDQNGQDRYTTEIQGDVLQMLDSRSDRGQMGGYEPQQQPTYQSHSQPKPSIASPSPVDAPLDDDIPF
>NC_010519.1|WP_012340239.1|1205690_1208522_+|excinuclease-ABC-subunit-UvrA
MEKIDIRGARTHNLKNISLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPEHHVTLSVQTISQMVDKVLSLPEESKIMLLAPVVKNRKGEHIKILENIAAQGYIRARIDGEICDLSDPPKLELQKKHTIEVVVDRFKVRSDLATRLAESFETALELSGGTAIVADMENSQVEELIFSANFACPHCGYSIPELEPRLFSFNNPAGACSTCDGLGVQQYFDEKRVVQNASISLAGGAIKGWDRRNFYYYQMLMSLAKHYDFDIELPFEKLPKKIQQIILNGSGDEEIEFQYMNDRGDVVLRHHSFEGILNNMARRYKETESMSVREELSKNISSRPCVDCCGSRLRSEARHVYIGEANLPDVSEKSIGEALNFIDNLTLTGQRGQIADKILKEIKERLQFLVNVGLSYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLLHLRNLGNTVIVVEHDEDAIMAADHIIDIGPGAGVHGGNVVAQGNAQEIMANPNSLTGNFLSGKEKIEIPLKRTAVDKQKMLRLKGASGNNLKQVNLDIPVGLFTCVTGVSGSGKSTLINDTLFPLAQNALNRAENSQFAPYQSIEGLEFFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFSGVPEARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDQCKGKRYNRETLEIRYKGKTIHQVLDMTVEEARVFFDAIPMVARKLQTLIDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLTVLHCLRDKGNTIVVIEHNLDVIKTADWIVDLGPEGGNGGGQIIATGTPEEVCLVEGSHTARFLKTMLAKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

178879 : 265488

Haemophilus_virus(20.69%)

transposase,tRNA,terminase,integrase,capsid,head,portal,protease,tail

attL 229494:229511|attR 260670:260687

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011608449.1\|178879_179617_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_011608450.1\|179652_180003_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_041605193.1\|180137_180929_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_011608452.1\|180992_181994_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_143432550.1\|182002_183097_-	rRNA methyltransferase	NA	NA	NA	NA
WP_012340837.1\|183220_184588_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_011608455.1\|184617_185328_-	3'-5' exonuclease	NA	NA	NA	NA
WP_052292860.1\|185324_187271_-	CBS domain-containing protein	NA	NA	NA	NA
WP_011608457.1\|187306_189217_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_012340867.1\|189459_190302_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_012340874.1\|190338_191103_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012340885.1\|191078_192179_-\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_012340894.1\|192244_192574_-	DUF413 domain-containing protein	NA	NA	NA	NA
WP_012340900.1\|192627_193236_-	DsbA family protein	NA	NA	NA	NA
WP_012340907.1\|193245_193512_-	YihD family protein	NA	NA	NA	NA
WP_012340917.1\|193578_194166_+	molybdenum cofactor guanylyltransferase MobA	NA	NA	NA	NA
WP_012340925.1\|194284_196291_+	oligopeptide transporter, OPT family	NA	NA	NA	NA
WP_012340934.1\|196412_197171_-	sel1 repeat family protein	NA	NA	NA	NA
WP_012340941.1\|197192_197456_-	hypothetical protein	NA	NA	NA	NA
WP_012340950.1\|197939_198902_-	lipoyl synthase	NA	NA	NA	NA
WP_012340959.1\|198919_199576_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_011608471.1\|199584_199881_-	YbeD family protein	NA	NA	NA	NA
WP_012340992.1\|201210_201771_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	3.1e-17	56.0
WP_012341000.1\|201813_202929_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_012341009.1\|202951_204856_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_012341017.1\|204872_205340_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_012341025.1\|205359_205668_-	ribosome silencing factor	NA	NA	NA	NA
WP_011608479.1\|206020_206863_-	metal ABC transporter permease	NA	NA	NA	NA
WP_011608480.1\|206855_207746_-	metal ABC transporter permease	NA	NA	NA	NA
WP_012341036.1\|207750_208509_-	ATP-binding cassette domain-containing protein	A0A1M7XV31	Cedratvirus	3.9e-15	26.3
WP_012341045.1\|208518_209400_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_011608483.1\|209505_209835_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	5.3e-25	52.8
WP_012341065.1\|209912_210575_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	9.3e-29	56.2
WP_011608485.1\|210982_212512_-	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_012341074.1\|212613_213309_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_041604967.1\|213229_214591_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L821	Tupanvirus	7.3e-36	35.5
WP_041605195.1\|214693_215815_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_012341077.1\|215817_216729_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_012341078.1\|217016_217568_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_011608492.1\|218614_220303_-	solute:sodium symporter family transporter	A0A219Y9P9	Aeromonas_phage	1.3e-37	29.3
WP_052292862.1\|220622_222389_+	outer membrane protein assembly factor	NA	NA	NA	NA
WP_012341082.1\|222399_225927_+	translocation/assembly module TamB	NA	NA	NA	NA
WP_012341083.1\|225929_227480_+	exopolyphosphatase	NA	NA	NA	NA
WP_012341084.1\|227652_229488_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
229494:229511	attL	NA	NA	NA	NA
WP_012341085.1\|229885_231130_-\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.2e-127	57.2
WP_012341086.1\|231145_231727_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	1.2e-59	62.9
WP_011609585.1\|231812_233111_-	trigger factor	NA	NA	NA	NA
WP_136122165.1\|233493_234885_+	type II/IV secretion system protein	NA	NA	NA	NA
WP_012341088.1\|234918_236178_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_011609582.1\|236247_237045_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_012341090.1\|237194_238571_+	signal recognition particle protein	NA	NA	NA	NA
WP_012341091.1\|238613_240353_-	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	1.5e-33	27.7
WP_012341092.1\|240844_241798_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.3e-28	29.9
WP_012341093.1\|241900_243037_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	1.6e-121	57.0
WP_012341094.1\|243083_243500_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	4.8e-47	62.0
WP_012341095.1\|243786_244248_-\|tail	phage tail protein	Q94MZ1	Haemophilus_virus	8.2e-32	41.9
WP_012341096.1\|244244_244697_-\|head	head completion/stabilization protein	Q1I0Z7	Pasteurella_virus	6.3e-37	54.0
WP_012341097.1\|244689_245571_-\|terminase	phage small terminase subunit	Q94MZ3	Haemophilus_virus	1.2e-50	39.1
WP_012341098.1\|245599_246631_-\|capsid	phage major capsid protein, P2 family	Q94MZ4	Haemophilus_virus	9.2e-116	63.7
WP_012341099.1\|246640_247066_-	hypothetical protein	NA	NA	NA	NA
WP_012341100.1\|247016_247538_-\|capsid	GPO family capsid scaffolding protein	Q94MZ5	Haemophilus_virus	1.6e-39	53.9
WP_012341101.1\|247700_249488_+\|terminase	terminase	Q94MZ6	Haemophilus_virus	9.6e-238	67.4
WP_012341102.1\|249498_250527_+\|portal	phage portal protein	Q94MZ7	Haemophilus_virus	3.3e-121	67.9
WP_012341103.1\|250582_250861_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_157857760.1\|250961_251345_-	restriction endonuclease subunit S	A0A1S5SA18	Streptococcus_phage	1.2e-12	36.1
WP_012341105.1\|251353_252739_-	N-6 DNA methylase	A0A1X9I6H1	Streptococcus_phage	2.7e-78	40.8
WP_012341106.1\|252755_253286_-	hypothetical protein	NA	NA	NA	NA
WP_012341107.1\|253300_255490_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.7e-109	38.4
WP_012341108.1\|255486_255756_-	hypothetical protein	NA	NA	NA	NA
WP_012341109.1\|255748_256237_-	hypothetical protein	NA	NA	NA	NA
WP_012341111.1\|256388_256667_-	hypothetical protein	NA	NA	NA	NA
WP_012341112.1\|256735_257500_-	site-specific DNA-methyltransferase	A0A0E3U2R2	Fusobacterium_phage	7.8e-112	74.8
WP_012341113.1\|257510_257972_-	ash family protein	NA	NA	NA	NA
WP_041604971.1\|258115_258319_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012341114.1\|258442_258724_-	hypothetical protein	NA	NA	NA	NA
WP_041604973.1\|258692_258914_-	hypothetical protein	NA	NA	NA	NA
WP_012341116.1\|259256_259694_+	DUF4065 domain-containing protein	D0UIM3	Aggregatibacter_phage	2.7e-45	65.1
WP_041604975.1\|259743_259923_-	hypothetical protein	Q19US2	Mannheimia_phage	3.3e-05	62.8
WP_143432501.1\|260015_260078_-	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA
WP_041604977.1\|260225_260408_-	hypothetical protein	Q19US2	Mannheimia_phage	1.3e-12	69.5
WP_012341117.1\|261095_261314_-	hypothetical protein	NA	NA	NA	NA
260670:260687	attR	NA	NA	NA	NA
WP_143432497.1\|262157_262649_-	ImmA/IrrE family metallo-endopeptidase	L7THB5	Pseudomonas_virus	2.3e-16	33.3
WP_012341119.1\|262645_263011_-	helix-turn-helix transcriptional regulator	L7TKV7	Pseudomonas_virus	2.7e-22	49.2
WP_012341120.1\|263372_263696_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012341122.1\|263688_263988_+	putative addiction module antidote protein	NA	NA	NA	NA
WP_012341123.1\|264627_265488_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	8.6e-51	36.0

DBSCAN-SWA_2

748860 : 786344

Haemophilus_phage(52.94%)

plate,transposase,terminase,capsid,head,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012341471.1\|748860_750849_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A0M3LPN5	Mannheimia_phage	3.0e-187	55.0
WP_012341472.1\|750852_751728_+	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	1.0e-83	55.2
WP_041605015.1\|751737_751932_+	hypothetical protein	NA	NA	NA	NA
WP_012341473.1\|751950_752166_+	hypothetical protein	NA	NA	NA	NA
WP_012341475.1\|752174_752369_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041605016.1\|752365_752596_+	hypothetical protein	NA	NA	NA	NA
WP_012341476.1\|752605_753223_+	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	3.9e-69	61.3
WP_012341477.1\|753389_753710_+	hypothetical protein	NA	NA	NA	NA
WP_012341479.1\|754403_754796_+	hypothetical protein	NA	NA	NA	NA
WP_012341481.1\|755380_755755_+	hypothetical protein	NA	NA	NA	NA
WP_012341482.1\|755741_756152_+	regulatory protein GemA	F6MIJ6	Haemophilus_phage	5.8e-21	43.7
WP_012341483.1\|756211_756706_+	hypothetical protein	NA	NA	NA	NA
WP_012341484.1\|756890_757319_+	hypothetical protein	A0A0M3LRS6	Mannheimia_phage	1.9e-27	45.1
WP_012341486.1\|757401_757938_+	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	5.2e-70	66.5
WP_157857762.1\|757940_758084_+	hypothetical protein	NA	NA	NA	NA
WP_012341487.1\|758080_758323_+	DUF2644 domain-containing protein	F6MIK0	Haemophilus_phage	4.6e-26	78.8
WP_012341488.1\|758319_758574_+	DUF2681 domain-containing protein	NA	NA	NA	NA
WP_012341489.1\|758684_758939_+	hypothetical protein	NA	NA	NA	NA
WP_012341490.1\|758938_759193_+	hypothetical protein	NA	NA	NA	NA
WP_012341491.1\|759193_759697_+	DUF1804 family protein	F6MIK6	Haemophilus_phage	7.3e-58	66.5
WP_012341492.1\|759799_761443_+\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	8.8e-262	81.1
WP_012341493.1\|761446_763105_+	DUF935 domain-containing protein	B7SDN1	Haemophilus_phage	1.4e-187	62.4
WP_012341494.1\|763091_764366_+\|capsid	minor capsid protein	B7SDN5	Haemophilus_phage	5.4e-126	54.3
WP_041605020.1\|764500_764689_+	hypothetical protein	NA	NA	NA	NA
WP_041605022.1\|764693_764879_-	hypothetical protein	NA	NA	NA	NA
WP_012341495.1\|764939_765425_+	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	5.4e-34	52.2
WP_012341497.1\|765685_766726_+\|protease	phage protease	B7SDN9	Haemophilus_phage	2.4e-71	50.4
WP_012341498.1\|766730_767657_+\|head	Mu-like prophage major head subunit gpT family protein	B7SDP1	Haemophilus_phage	2.4e-107	62.6
WP_012341499.1\|767700_768171_+	hypothetical protein	B7SDP3	Haemophilus_phage	3.4e-17	62.9
WP_012341500.1\|768173_768608_+	DUF1320 domain-containing protein	A0A0M3LP98	Mannheimia_phage	3.3e-35	55.3
WP_041605024.1\|768591_769233_+	DUF1834 family protein	B7SDP5	Haemophilus_phage	2.3e-48	47.9
WP_012341502.1\|769229_769412_+	DUF2635 domain-containing protein	A0A0M3LQM9	Mannheimia_phage	8.2e-12	64.2
WP_012341503.1\|769404_770820_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0M3LQC3	Mannheimia_phage	2.8e-139	56.7
WP_012341504.1\|770829_771204_+	hypothetical protein	F6MIK8	Haemophilus_phage	4.7e-38	65.3
WP_012341505.1\|771203_771575_+\|tail	phage tail assembly protein	A0A0M3LSI2	Mannheimia_phage	8.6e-16	43.9
WP_041605026.1\|771604_771790_+	hypothetical protein	NA	NA	NA	NA
WP_012341506.1\|771837_774255_+\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	4.9e-51	28.0
WP_136121573.1\|774272_775589_+	DNA circularization N-terminal domain-containing protein	F6MIL2	Haemophilus_phage	6.7e-87	40.1
WP_012341509.1\|775578_776724_+	hypothetical protein	A0A0M3LPS4	Mannheimia_phage	4.1e-141	69.5
WP_012341510.1\|776723_777380_+\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	1.0e-67	60.6
WP_012341511.1\|777458_777809_+	phage GP46 family protein	A0A0M3LQK5	Mannheimia_phage	2.2e-45	75.0
WP_012341512.1\|777822_778887_+\|plate	baseplate J/gp47 family protein	F6MIL6	Haemophilus_phage	7.7e-126	64.6
WP_012341513.1\|778886_779474_+	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	4.8e-69	65.6
WP_012341514.1\|779477_781436_+\|tail	tail fiber protein	Q94MY0	Haemophilus_virus	4.5e-103	48.2
WP_012341516.1\|782039_782534_+	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	1.3e-48	56.8
WP_075290756.1\|782711_782843_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_012341517.1\|782901_783660_+	DNA methyltransferase	U4KJA1	Streptococcus_phage	9.6e-70	51.4
WP_012341519.1\|783646_784483_+	hypothetical protein	F6MIM2	Haemophilus_phage	9.1e-106	64.7
WP_012341520.1\|784503_784692_-	hypothetical protein	D0R0C0	Streptococcus_phage	1.8e-06	46.6
WP_041605028.1\|784695_784974_-	hypothetical protein	NA	NA	NA	NA
WP_012341522.1\|785159_786344_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.5e-13	28.6

DBSCAN-SWA_3

997097 : 1030863

Mannheimia_phage(34.38%)

integrase,tRNA,terminase

attL 998983:998998|attR 1023291:1023306

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012341665.1\|997097_998864_-\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	3.6e-11	27.7
998983:998998	attL	NA	NA	NA	NA
WP_041605047.1\|999024_999750_+	carboxy-S-adenosyl-L-methionine synthase CmoA	S5VMD2	Pseudomonas_phage	6.4e-23	31.4
WP_012341667.1\|999787_1000636_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.1e-29	38.7
WP_012341669.1\|1001038_1002094_-\|integrase	site-specific integrase	A0A077KGX2	Edwardsiella_phage	3.9e-61	37.5
WP_075290674.1\|1001997_1002297_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012341670.1\|1002328_1003426_-	DNA cytosine methyltransferase	Q6V7R9	Burkholderia_virus	1.2e-92	51.5
WP_041605049.1\|1003470_1003740_-	hypothetical protein	NA	NA	NA	NA
WP_012341671.1\|1003732_1004233_-	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	8.3e-38	50.6
WP_012341673.1\|1005040_1005679_-	ribonuclease H-like domain-containing protein	R9ZX90	Cellulophaga_phage	1.2e-09	26.7
WP_012341674.1\|1005831_1006158_-	hypothetical protein	NA	NA	NA	NA
WP_012341675.1\|1006154_1006592_-	hypothetical protein	NA	NA	NA	NA
WP_012341676.1\|1006588_1006873_-	hypothetical protein	NA	NA	NA	NA
WP_012341677.1\|1006959_1007799_-	phage antirepressor N-terminal domain-containing protein	A0A0M3LR56	Mannheimia_phage	2.0e-52	78.0
WP_041605051.1\|1008332_1008521_+	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	2.0e-08	50.9
WP_012341678.1\|1008590_1009388_-	hypothetical protein	NA	NA	NA	NA
WP_012341680.1\|1009788_1009974_+	hypothetical protein	Q19US2	Mannheimia_phage	1.0e-09	59.6
WP_012341681.1\|1010152_1010518_+	hypothetical protein	NA	NA	NA	NA
WP_012341682.1\|1010619_1011249_-	hypothetical protein	A0A088C400	Shewanella_sp._phage	4.9e-35	43.4
WP_012341683.1\|1011245_1011908_-	AAA family ATPase	K7PMI2	Enterobacteria_phage	1.3e-59	51.2
WP_012341684.1\|1011971_1012604_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	2.4e-13	45.1
WP_132994684.1\|1012881_1013628_-	damage-inducible protein D	NA	NA	NA	NA
WP_041605053.1\|1014063_1014279_+	hypothetical protein	NA	NA	NA	NA
WP_012341686.1\|1014767_1014989_-	hypothetical protein	NA	NA	NA	NA
WP_012341687.1\|1015000_1015189_+	DUF1508 domain-containing protein	A0A2P1N580	Mycobacterium_phage	2.2e-07	59.1
WP_012341688.1\|1015605_1015902_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	1.9e-26	58.3
WP_012341689.1\|1015903_1016200_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.5e-15	47.8
WP_012341691.1\|1016227_1017232_-	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	1.8e-31	30.5
WP_012341692.1\|1017328_1018015_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	2.1e-39	43.8
WP_012341693.1\|1018117_1018345_+	hypothetical protein	A0A1I9KFF6	Aeromonas_phage	2.8e-09	43.1
WP_012341694.1\|1018497_1018737_+	helix-turn-helix domain-containing protein	A0A0M3LR73	Mannheimia_phage	5.9e-26	78.4
WP_011609555.1\|1019547_1020240_+	replication protein P	A0A077KCC8	Edwardsiella_phage	5.5e-24	35.4
WP_012341696.1\|1020254_1020788_+	phage N-6-adenine-methyltransferase	A0A0M3LNW2	Mannheimia_phage	6.5e-65	64.3
WP_012341697.1\|1020800_1021253_+	DUF1367 family protein	A0A0M3LPN2	Mannheimia_phage	1.3e-69	82.7
WP_012341698.1\|1021304_1021919_-	hypothetical protein	A0A0R6PGW1	Moraxella_phage	6.2e-27	57.1
WP_012341699.1\|1022473_1022887_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	1.6e-34	55.5
WP_011609549.1\|1022909_1023095_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.1e-14	66.7
WP_012341702.1\|1023285_1023864_+	recombination protein NinG	A0A0M3LTG3	Mannheimia_phage	1.6e-45	52.4
1023291:1023306	attR	NA	NA	NA	NA
WP_041605056.1\|1023853_1024258_+	hypothetical protein	NA	NA	NA	NA
WP_041605264.1\|1024491_1024872_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_012341704.1\|1025177_1025414_+	hypothetical protein	A0A0M3LR95	Mannheimia_phage	2.7e-23	70.5
WP_011609542.1\|1025406_1025943_+	lysozyme	Q19UR6	Mannheimia_phage	5.2e-46	50.3
WP_012341706.1\|1025915_1026245_+	DUF2570 family protein	NA	NA	NA	NA
WP_041604566.1\|1026273_1026417_+	hypothetical protein	A0A0M3LNX0	Mannheimia_phage	9.9e-13	69.8
WP_012341707.1\|1026441_1027137_+\|terminase	terminase	NA	NA	NA	NA
WP_011609539.1\|1027136_1028684_+	hypothetical protein	A0A1B1IVN4	uncultured_Mediterranean_phage	6.4e-97	42.0
WP_157857774.1\|1028796_1030863_+	hypothetical protein	S4S2T1	Puniceispirillum_phage	4.2e-43	26.3

DBSCAN-SWA_4

1268417 : 1358855

Mannheimia_phage(45.0%)

plate,tRNA,terminase,integrase,capsid,head,holin,protease,tail

attL 1297777:1297795|attR 1323883:1323901

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011608850.1\|1268417_1268852_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_011608851.1\|1268899_1269778_-	N-acetylneuraminate lyase	NA	NA	NA	NA
WP_011608852.1\|1269810_1270680_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_012340289.1\|1270660_1271182_-	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_012340290.1\|1271197_1272076_-	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_012340292.1\|1272092_1272785_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_012340293.1\|1272830_1273421_-	N-acylneuraminate cytidylyltransferase	NA	NA	NA	NA
WP_012340294.1\|1273653_1274640_+	sialic acid TRAP transporter substrate-binding protein SiaP	NA	NA	NA	NA
WP_012340295.1\|1274694_1276560_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_011608859.1\|1276910_1279052_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_012340296.1\|1279454_1281260_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.6e-52	32.6
WP_005627617.1\|1281321_1281540_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_012340297.1\|1281750_1282422_+	N-acylneuraminate cytidylyltransferase	NA	NA	NA	NA
WP_012340298.1\|1282528_1283548_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.3e-87	48.0
WP_012340299.1\|1283814_1285401_+	L-lactate permease	NA	NA	NA	NA
WP_011608864.1\|1285480_1286212_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_012340301.1\|1286213_1287626_+	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_012340302.1\|1287625_1288324_+	lactate utilization protein C	NA	NA	NA	NA
WP_012340303.1\|1288396_1290109_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_012340304.1\|1290316_1291033_+	two-component system response regulator ArcA	NA	NA	NA	NA
WP_012340305.1\|1291211_1292192_-	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA
WP_012340306.1\|1292610_1295439_+	ribonuclease E	NA	NA	NA	NA
WP_012340307.1\|1295896_1298752_-	DNA polymerase I	A0A2H4J6W7	uncultured_Caudovirales_phage	2.3e-63	29.3
1297777:1297795	attL	NA	NA	NA	NA
WP_012340308.1\|1298959_1300972_+	DNA helicase Rep	A7KV33	Bacillus_phage	7.5e-114	37.4
WP_012340309.1\|1301648_1302638_+\|integrase	site-specific integrase	Q19US1	Mannheimia_phage	2.3e-84	52.4
WP_132995599.1\|1302634_1302922_-	hypothetical protein	NA	NA	NA	NA
WP_012340312.1\|1302899_1305263_-	replication endonuclease	Q1I108	Pasteurella_virus	4.0e-215	51.6
WP_012340313.1\|1305281_1305575_-	hypothetical protein	NA	NA	NA	NA
WP_012340314.1\|1305571_1305925_-	hypothetical protein	NA	NA	NA	NA
WP_012340315.1\|1305940_1306231_-	hypothetical protein	NA	NA	NA	NA
WP_041605076.1\|1306379_1306649_-	hypothetical protein	Q19UN6	Mannheimia_phage	8.7e-18	48.2
WP_012340316.1\|1306629_1306875_-	helix-turn-helix domain-containing protein	Q19UN8	Mannheimia_phage	3.9e-09	50.0
WP_012340317.1\|1307014_1307704_+	helix-turn-helix transcriptional regulator	A0A0M3LPF9	Mannheimia_phage	1.4e-35	40.6
WP_157857766.1\|1307800_1307950_+	hypothetical protein	NA	NA	NA	NA
WP_012340318.1\|1307986_1309162_-\|tail	tail protein	R9QBT3	Mannheimia_phage	9.2e-104	50.4
WP_012340319.1\|1309158_1309602_-\|tail	phage tail protein	A0A0M3LQ18	Mannheimia_phage	3.5e-40	57.9
WP_075290527.1\|1309663_1309780_-\|tail	GpE family phage tail protein	R9QCM4	Mannheimia_phage	2.5e-06	60.5
WP_012340320.1\|1309806_1310115_-\|tail	phage tail assembly protein	F1BUU0	Erwinia_phage	1.4e-16	46.7
WP_012340322.1\|1310142_1310652_-\|tail	phage major tail tube protein	E5E3Q2	Burkholderia_phage	1.1e-45	53.8
WP_012340323.1\|1310662_1311916_-\|tail	phage tail sheath protein	A4PE49	Ralstonia_virus	5.2e-137	59.9
WP_012340324.1\|1312128_1312377_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_012340325.1\|1312376_1312640_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
WP_012340326.1\|1312854_1313043_+	hypothetical protein	A0A0M3LQV3	Mannheimia_phage	5.5e-11	58.2
WP_012340327.1\|1313045_1313522_-	hypothetical protein	F6MIM0	Haemophilus_phage	5.6e-44	56.2
WP_012340328.1\|1313514_1314141_-	DUF4376 domain-containing protein	F6MIL9	Haemophilus_phage	2.5e-60	58.7
WP_012340329.1\|1314203_1314455_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	1.2e-13	50.6
WP_012340331.1\|1314791_1316891_-\|tail	phage tail protein	Q94MY0	Haemophilus_virus	1.1e-107	45.2
WP_012340333.1\|1316936_1317491_-\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	1.0e-52	54.5
WP_012340334.1\|1317480_1318395_-\|plate	baseplate J/gp47 family protein	Q19UQ5	Mannheimia_phage	2.4e-99	61.2
WP_012340335.1\|1318378_1318735_-	GPW/gp25 family protein	Q19UQ6	Mannheimia_phage	8.0e-19	48.0
WP_041605078.1\|1318734_1319346_-\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	5.6e-28	46.7
WP_012340337.1\|1319574_1319922_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012340338.1\|1319909_1320194_-	hypothetical protein	NA	NA	NA	NA
WP_012340339.1\|1320348_1322847_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	1.0e-104	37.2
WP_012341730.1\|1322980_1323358_+	hypothetical protein	NA	NA	NA	NA
WP_012340340.1\|1323612_1324074_-	phage virion morphogenesis protein	A0A0M3LNN0	Mannheimia_phage	2.2e-37	59.7
1323883:1323901	attR	NA	NA	NA	NA
WP_012340341.1\|1324086_1324527_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	1.9e-25	46.6
WP_041605081.1\|1324537_1324765_-	hypothetical protein	NA	NA	NA	NA
WP_041605083.1\|1324884_1325334_-	hypothetical protein	NA	NA	NA	NA
WP_012340344.1\|1325326_1325863_-	lysozyme	A0A0M3LQY4	Mannheimia_phage	2.0e-50	51.9
WP_041605085.1\|1325855_1326068_-\|holin	phage holin family protein	Q1I0Z2	Pasteurella_virus	2.1e-06	53.3
WP_012340346.1\|1326080_1326296_-\|tail	tail protein X	A0A0M3LPY0	Mannheimia_phage	4.4e-12	52.3
WP_012340347.1\|1326295_1326808_-\|head	head completion/stabilization protein	A0A0M3LNL8	Mannheimia_phage	3.0e-43	56.0
WP_012340348.1\|1326911_1327565_-\|terminase	terminase	A4JWP8	Burkholderia_virus	2.7e-36	41.7
WP_012340349.1\|1327576_1328629_-\|capsid	phage major capsid protein, P2 family	A0A077KEQ8	Ralstonia_phage	6.1e-91	55.8
WP_012340350.1\|1328652_1329477_-\|capsid	GPO family capsid scaffolding protein	Q19UT4	Mannheimia_phage	1.4e-61	50.0
WP_012340351.1\|1329640_1329985_+	helix-turn-helix domain-containing protein	A0A0M3LRV4	Mannheimia_phage	3.1e-36	67.6
WP_143432690.1\|1330233_1333404_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_011608875.1\|1333586_1334108_-	heme utilization protein HutZ	NA	NA	NA	NA
WP_011608876.1\|1334125_1334620_-	heme utilization cystosolic carrier protein HutX	NA	NA	NA	NA
WP_012340354.1\|1334822_1335452_+	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
WP_143432487.1\|1335573_1337412_+\|protease	ATP-dependent zinc metalloprotease FtsH	H8ZJI5	Ostreococcus_tauri_virus	1.1e-114	41.9
WP_012340356.1\|1337744_1338542_+	LicD family protein	A0A1V0SD50	Indivirus	2.2e-08	48.3
WP_041605088.1\|1338888_1339191_-	TonB-dependent receptor	NA	NA	NA	NA
WP_012340357.1\|1339852_1340113_-	hemin receptor, outer membrane protein	NA	NA	NA	NA
WP_012340358.1\|1340137_1340428_+	hypothetical protein	NA	NA	NA	NA
WP_041605090.1\|1340446_1340722_+	hypothetical protein	NA	NA	NA	NA
WP_012340359.1\|1340804_1341248_+	hypothetical protein	A0A2H4JEZ8	uncultured_Caudovirales_phage	8.2e-21	50.9
WP_041605092.1\|1342020_1342632_+	hypothetical protein	NA	NA	NA	NA
WP_012340361.1\|1342705_1343545_+	nucleotide-binding protein	NA	NA	NA	NA
WP_012340362.1\|1343735_1344005_+	hypothetical protein	NA	NA	NA	NA
WP_012340365.1\|1344939_1345881_+	hypothetical protein	NA	NA	NA	NA
WP_003033056.1\|1345867_1346080_+	helix-turn-helix transcriptional regulator	A0A2K5B261	Erysipelothrix_phage	5.8e-09	55.0
WP_012340368.1\|1347139_1348855_+	ATP-binding protein	NA	NA	NA	NA
WP_012340370.1\|1350056_1350629_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_143432554.1\|1351338_1351563_+	hypothetical protein	NA	NA	NA	NA
WP_012340373.1\|1352386_1353214_+	dihydropteroate synthase	NA	NA	NA	NA
WP_012340374.1\|1353304_1354639_+	phosphoglucosamine mutase	NA	NA	NA	NA
WP_012340375.1\|1354652_1355120_+	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_011608885.1\|1355124_1356084_+	AEC family transporter	NA	NA	NA	NA
WP_012340378.1\|1356211_1358134_+	ATP-dependent DNA helicase	A0A127AW80	Bacillus_phage	2.6e-95	32.3
WP_012340379.1\|1358138_1358855_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA

DBSCAN-SWA_5

1869883 : 1923352

Salmonella_phage(30.0%)

integrase,transposase

attL 1865839:1865898|attR 1871299:1871832

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1865839:1865898	attL	NA	NA	NA	NA
WP_012340749.1\|1869883_1870810_+\|integrase	site-specific integrase	A8ATM2	Listeria_phage	6.2e-79	48.7
WP_052292875.1\|1870822_1871329_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_012340753.1\|1872726_1873143_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	9.6e-48	63.5
1871299:1871832	attR	NA	NA	NA	NA
WP_012340754.1\|1873189_1874326_+\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	1.0e-120	57.0
WP_052292876.1\|1874482_1874896_+	ash family protein	NA	NA	NA	NA
WP_011608684.1\|1875025_1875286_+	hypothetical protein	NA	NA	NA	NA
WP_012340757.1\|1875422_1875914_+	hypothetical protein	NA	NA	NA	NA
WP_012340759.1\|1875906_1876092_+	hypothetical protein	NA	NA	NA	NA
WP_012340754.1\|1876214_1877351_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	1.0e-120	57.0
WP_012340753.1\|1877397_1877814_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	9.6e-48	63.5
WP_012340760.1\|1877973_1878402_-	hypothetical protein	NA	NA	NA	NA
WP_041605126.1\|1878575_1878857_-	barstar family protein	NA	NA	NA	NA
WP_012340762.1\|1879769_1880156_-	hypothetical protein	NA	NA	NA	NA
WP_012340764.1\|1880375_1880621_-	MafI family immunity protein	NA	NA	NA	NA
WP_012340765.1\|1880625_1882686_-	EndoU domain-containing protein	NA	NA	NA	NA
WP_041605130.1\|1882835_1883054_-	hypothetical protein	NA	NA	NA	NA
WP_041605132.1\|1883252_1883603_-	hypothetical protein	NA	NA	NA	NA
WP_012340766.1\|1883602_1884052_-	hypothetical protein	NA	NA	NA	NA
WP_157857769.1\|1884172_1884304_-	hypothetical protein	NA	NA	NA	NA
WP_012340768.1\|1884362_1884803_-	hypothetical protein	NA	NA	NA	NA
WP_081376837.1\|1884811_1885915_-	VENN motif pre-toxin domain-containing protein	NA	NA	NA	NA
WP_157857775.1\|1887063_1887288_-	hypothetical protein	NA	NA	NA	NA
WP_075290748.1\|1887520_1887868_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_041605134.1\|1887842_1888067_-	hypothetical protein	NA	NA	NA	NA
WP_012340772.1\|1888066_1888423_-	hypothetical protein	NA	NA	NA	NA
WP_012340773.1\|1888674_1888926_-	hypothetical protein	NA	NA	NA	NA
WP_080514403.1\|1888922_1889678_-	VENN motif pre-toxin domain-containing protein	NA	NA	NA	NA
WP_041605136.1\|1890231_1890447_-	hypothetical protein	NA	NA	NA	NA
WP_157857770.1\|1890443_1892558_-	VENN motif pre-toxin domain-containing protein	NA	NA	NA	NA
WP_012340776.1\|1892582_1892975_-	hypothetical protein	NA	NA	NA	NA
WP_012340777.1\|1892974_1893256_-	hypothetical protein	NA	NA	NA	NA
WP_075290752.1\|1893294_1893546_-	hypothetical protein	NA	NA	NA	NA
WP_012340780.1\|1893784_1902019_-	DNA/RNA non-specific endonuclease	A0A0R6PJK4	Moraxella_phage	1.6e-48	38.1
WP_012340783.1\|1902930_1903641_-	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	A0A2I7SAW6	Vibrio_phage	2.0e-61	57.1
WP_012340784.1\|1903823_1904609_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_012340785.1\|1904617_1905253_+	SCP2 domain-containing protein	NA	NA	NA	NA
WP_041605323.1\|1905252_1906887_+	ubiquinone biosynthesis regulatory protein kinase UbiB	A0A0P0CRP3	Ostreococcus_lucimarinus_virus	3.2e-38	29.0
WP_011608702.1\|1906991_1907213_+	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA
WP_012340787.1\|1907216_1907771_+	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA
WP_012340789.1\|1907767_1908505_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_011608705.1\|1908570_1909593_+	porphobilinogen synthase	NA	NA	NA	NA
WP_041605325.1\|1909649_1910831_-	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_012340791.1\|1910871_1911378_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_012340792.1\|1911658_1913665_+	transketolase	NA	NA	NA	NA
WP_012340793.1\|1913857_1914580_-	hypothetical protein	NA	NA	NA	NA
WP_157857776.1\|1914725_1914884_-	hypothetical protein	NA	NA	NA	NA
WP_011608709.1\|1919527_1921156_+	CTP synthase (glutamine hydrolyzing)	A0A1J0FA14	Only_Syngen_Nebraska_virus	5.6e-152	50.0
WP_012340754.1\|1922215_1923352_-\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	1.0e-120	57.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage