CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010465	Yersinia pseudotuberculosis YPIII, complete genome	5 crisprs	cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DEDDh,DinG,csa3	1	28	8	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010465_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010465_1

1629337-1629448

Orphan

Consensus_repeat	Method
TTTGAAGAAAATTCCTAATGGTTAATTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010465_1

>merge|NC_010465|1|1629337-1629448|CRISPRCasFinder
TTTGAAGAAAATTCCTAATGGTTAATTAATGACGGGTATTAATTCAAAAAAACACCTATTATTTAGGAATGCGAGAAGATGATTTGAAGAAAATTCCTAACGGTTAATTAAT

>NC_010465|1|1|1629337-1629448|CRISPRCasFinder
TTTGAAGAAAATTCCTAATGGTTAATTAAT	GACGGGTATTAATTCAAAAAAACACCTATTATTTAGGAATGCGAGAAGATGA
TTTGAAGAAAATTCCTAACGGTTAATTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010465.1\|WP_002215321.1\|1619369_1619852_-\|DUF1795-domain-containing-protein	unknown	unknown	gnl\|CDD\|227722
NC_010465.1\|WP_011192708.1\|1636741_1637350_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NC_010465.1\|WP_011192713.1\|1624644_1625838_-\|ImpA-family-type-VI-secretion-system-protein	unknown	unknown	gnl\|CDD\|226046
NC_010465.1\|WP_012104865.1\|1622229_1623567_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|371506
NC_010465.1\|WP_011192714.1\|1623606_1624638_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NC_010465.1\|WP_011192718.1\|1618394_1618997_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NC_010465.1\|WP_002211574.1\|1638003_1639506_+\|type-VI-secretion-system-contractile-sheath-large-subunit	unknown	unknown	gnl\|CDD\|226048
NC_010465.1\|WP_012104866.1\|1629625_1632283_+\|type-VI-secretion-system-ATPase-TssH	unknown	unknown	gnl\|CDD\|274528
NC_010465.1\|WP_002211582.1\|1626961_1628842_-\|type-VI-secretion-system-baseplate-subunit-TssF	unknown	unknown	gnl\|CDD\|226050
NC_010465.1\|WP_072085036.1\|1616040_1617153_+\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|236754
NC_010465.1\|WP_002211572.1\|1640597_1641137_+\|type-VI-secretion-system-lipoprotein-TssJ	unknown	unknown	gnl\|CDD\|226052
NC_010465.1\|WP_080513669.1\|1633177_1633957_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|236634
NC_010465.1\|WP_012303906.1\|1621531_1622233_-\|hypothetical-protein	unknown	unknown	unknown
NC_010465.1\|WP_012104863.1\|1619848_1621531_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439
NC_010465.1\|WP_002211575.1\|1637455_1637980_+\|type-VI-secretion-system-contractile-sheath-small-subunit	unknown	unknown	gnl\|CDD\|226047
NC_010465.1\|WP_002211573.1\|1639838_1640324_+\|type-VI-secretion-system-tube-protein-Hcp	unknown	unknown	gnl\|CDD\|225699
NC_010465.1\|WP_002211580.1\|1632493_1633039_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NC_010465.1\|WP_012303909.1\|1634084_1636757_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NC_010465.1\|WP_002211571.1\|1641140_1642490_+\|type-VI-secretion-system-baseplate-subunit-TssK	unknown	unknown	gnl\|CDD\|226053
NC_010465.1\|WP_012303907.1\|1625936_1626962_-\|type-VI-secretion-system-baseplate-subunit-TssG	unknown	unknown	gnl\|CDD\|226051

Protein	Function_ID	Function_description	E-value
NC_010465.1\|WP_002215321.1\|1619369_1619852_-\|DUF1795-domain-containing-protein	gnl\|CDD\|227722	COG5435, COG5435, Uncharacterized conserved protein [Function unknown].	1.8658e-59
NC_010465.1\|WP_011192713.1\|1624644_1625838_-\|ImpA-family-type-VI-secretion-system-protein	gnl\|CDD\|226046	COG3515, COG3515, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	7.7898e-68
NC_010465.1\|WP_012104865.1\|1622229_1623567_-\|glycosyl-transferase	gnl\|CDD\|371506	pfam11397, GlcNAc, Glycosyltransferase (GlcNAc). GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1, a ubiquitous eukaryotic protein, in the cytoplasm.	6.19264e-72
NC_010465.1\|WP_011192714.1\|1623606_1624638_-\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	6.3376e-12
NC_010465.1\|WP_011192718.1\|1618394_1618997_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.11998e-11
NC_010465.1\|WP_002211574.1\|1638003_1639506_+\|type-VI-secretion-system-contractile-sheath-large-subunit	gnl\|CDD\|226048	COG3517, COG3517, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NC_010465.1\|WP_012104866.1\|1629625_1632283_+\|type-VI-secretion-system-ATPase-TssH	gnl\|CDD\|274528	TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
NC_010465.1\|WP_002211582.1\|1626961_1628842_-\|type-VI-secretion-system-baseplate-subunit-TssF	gnl\|CDD\|226050	COG3519, COG3519, Type VI protein secretion system component VasA [Intracellular trafficking, secretion, and vesicular transport].	0
NC_010465.1\|WP_072085036.1\|1616040_1617153_+\|lytic-murein-transglycosylase-B	gnl\|CDD\|236754	PRK10760, PRK10760, murein hydrolase B; Provisional.	0
NC_010465.1\|WP_002211572.1\|1640597_1641137_+\|type-VI-secretion-system-lipoprotein-TssJ	gnl\|CDD\|226052	COG3521, COG3521, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	1.44402e-54
NC_010465.1\|WP_080513669.1\|1633177_1633957_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	1.20208e-82
NC_010465.1\|WP_011192708.1\|1636741_1637350_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	9.32653e-21
NC_010465.1\|WP_012104863.1\|1619848_1621531_-\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	2.4797e-34
NC_010465.1\|WP_002211575.1\|1637455_1637980_+\|type-VI-secretion-system-contractile-sheath-small-subunit	gnl\|CDD\|226047	COG3516, COG3516, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	5.26642e-84
NC_010465.1\|WP_002211573.1\|1639838_1640324_+\|type-VI-secretion-system-tube-protein-Hcp	gnl\|CDD\|225699	COG3157, Hcp, Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion, and vesicular transport].	1.41624e-58
NC_010465.1\|WP_002211580.1\|1632493_1633039_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	3.17482e-21
NC_010465.1\|WP_012303909.1\|1634084_1636757_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_010465.1\|WP_002211571.1\|1641140_1642490_+\|type-VI-secretion-system-baseplate-subunit-TssK	gnl\|CDD\|226053	COG3522, COG3522, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	0
NC_010465.1\|WP_012303907.1\|1625936_1626962_-\|type-VI-secretion-system-baseplate-subunit-TssG	gnl\|CDD\|226051	COG3520, COG3520, Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport].	4.8896e-133

>NC_010465.1|WP_002211582.1|1626961_1628842_-|type-VI-secretion-system-baseplate-subunit-TssF
MDHKFLDYYNKELTFMREMAQEFAEKHPKIAGRLGMHGIEVADPYVERLIESFCFLSARTQIKLDAEFPKFTQRLLDIVYPNYNSPTPSMGVIQLKPNLKEGDLTQGYCVPRGSSFFTHIAPGETTRCEFRSGQDVELWPLEIAEARLSSVPPDMPNLEKHRIAYHRLKGALRIKLKLVGDLTFSQLEGLDRLPIYIDGDERIVSHIFELLHASHVATIIRAGHGETAKDTVISDQPLSFEGLSPDQSLLPLSWNIFHGHNLVQEYFTCRQRFYFFTLTQLSQSLRDNHTGEAEIIILLDRLPQDLVSHVAPSRFLLACTPVINLFPKRMDKIEINRALNDFHVVPDRSRPLDYEVFAINKVFGQQAETSNEVVFNPLYQTRHCDNGNFGRYFSITRKARTGDSNKRKYDTRTPYASTEVFVSLVDQQEAPYGDSLRYLSIEAQVTNRDLPRLISASGNFELTMSDSAPVHGARFVFQPSAPRAPFAMDESAWRLIRQLSFNYLPLSDMSHSNGGESLRNMLRLFVNASDHESNTQIDALVGCKSEPVIRRLPGNGLLVYGRGICCTLTVDEEGFSGISPYLFGMIMENYVARHAAINVFTETELNSMQRGRVGHWKARPGRRGVL
>NC_010465.1|WP_012303907.1|1625936_1626962_-|type-VI-secretion-system-baseplate-subunit-TssG
MLPDESVHQEKHANLDAWYQESQPWNAGFISMMRANAARTPTLPAPGKAPLPEQEAFRIGQSAHMTFSPREISHAVMKDGKMDLQLFGLGIWGPNGAMPLQMTELAYTRAELHDHTMTDFVDLFHHRALSQLYRAWFVSQDTASLDRQSDEKFSFYVGSLAGLDPQELNDTELPVHARLASSAHLIREARNPEGLVGALQYYFDVPVRMVEYAEQWIFLEESDQTQLGDGAGAMLLGDGAILGNTVLDRQHKFQLILGPLSLQQYLRFSLWGQDLPVLREWVRNFVGFEYAWEVQLLLSADEVPMATLDGGHQLGYTSWLARSDTTLDVGGMSFEPEMHHD
>NC_010465.1|WP_011192713.1|1624644_1625838_-|ImpA-family-type-VI-secretion-system-protein
MSEQSIAERAGYYQSMMQPIPGDFPCGKNLEYDPAFIMLQTKLQPKQAAEYGNFVEVAEPNNWTDIERKCLELLNNSRDIRLFIILMRCRMRQVGVGALQEGLEAILWCLDTWPDQLHPQLFDEGEFEPLMRGNAFAELEDIDGFIADFRNQQLPKAAGVQLSIKEFEKAHSVPREEGALDEGTLEAVKQEWQNRSDHTILSLQHAYALLQGLATRLNNSLGEDTPDFVRMTSVLRHFDAAITPIAPIVVPEPIETPDVVELYPVATAMLASTEMPVTAEVQTVAETQMAIPIEAPQQRQAVVTPSPPLQPLQLQSAQLQPVPIQSPPVPVQQQGIQNRADALARLIEVREWFTAMEPSSPVIALLAFSEKTIGKSFGELLQFIPQELISKLNEGQE
>NC_010465.1|WP_011192714.1|1623606_1624638_-|fimbrial-protein
MTRKLFILVFGAAISGQVNANCTLHLVSNSESVAGVMPLTFPISSFTFTIDADAPNDSTVPILEKVAQPQGLAVIYHCTSVDRYGKNVGPILGQDLGNGLFATNIDGIAIKPAWNNGAAYGYFNSSGIMPAFEREGVPTEEGFWTYPGTSHFRFELYKIKDTLNLTDTNGERVLPGGTIAYTWATNNSLANYAQRLEIGEIKVISTPSCTFDGPQKVNFGLVTSSNLNNGGIERDLDFNITCKTDYGHYSATAAISTQTPSDDNNYIKVKDNQNQEDRLLIKISDTNGQQMKVNGSTTEQQVNIASGVPAGFRWKAKLEAAPAANKPAIGDFSAMAEIILQIK
>NC_010465.1|WP_012104865.1|1622229_1623567_-|glycosyl-transferase
MQSVPSIFVSIASYRDPELIPTLHDMINTAERPENLNIAIFWQNDNDINTFLNQGMQLIERKTHQGYPLYQLEYNRARVSVLSVHYYESRGACWARHMAETLFQDEAFFLQIDSHCRFIPHWDHEMIAMLDSLRAESPKPILSSYPPAYEPGENEIRKDYVSRMIFNLFTQEGIVQMLSTTITETAPVRCGYLAGGFIFSDGSFAREVPNDPNIFFIGEEIAMAARAFTHGYDIYAPHKILLWHFYTRAEHSKVWSDHNNEAKETGAVDMAWWERDKIAKDRICILLDGDKDHRVLAPYTLGTQRSLSEFEYRLGINIKNRAVHPDAAGEKKVSFFTDLPTSHEDWLSSLISVNKKTLKVEKKEVDFTREDVEWWHIGVYNPQNVAVMVEKVDPQNLSKTVTPVDEATFELKLAFNTQTHPNAQTIRICPYMRTQGWGDVVEKPW
>NC_010465.1|WP_012303906.1|1621531_1622233_-|hypothetical-protein
MSSADIFKKILSIDTLLSFDGVIPSLSEFQLKLVTLIEQFGHALQSEGHNETEVDRLCHQICHSLDKRAGSAIKENGLSWEGYSLVHYFYGYIAPVPSESESLEALLNSDDATVSQFALKILALSQSLPIHDEKSLQLLARYSHRSLRQNIIATDDDIDPEEWLGSALKREETIEAEQVPEANIVSEANIALEANIVSEQRRSSRPFYLQLITLTLLLSTLWFWCSRYLGDLS
>NC_010465.1|WP_012104863.1|1619848_1621531_-|OmpA-family-protein
MFKVKLNKTLSLLWLAAVGTLLVSVNFKGNALWNNVIFITFLALMVLAIWKHYALKPKHPQVPIPVPQETAEPVEQESTVILILGPYAEKWFSNPESPDSTRFSSHAVWILITNPAALQKRLTYIAEHHPSAQVLTFFPFLPDVYENAAVMMSKLTVWQNTFSTLSLRSPLPCVFAIYAQLSNERLSHNSDNAYWTGNINLANQQPIEITQALQSLSQRLELQDINHSGFATQRNVMAHNLFTWLNESGVTNLLQSIFSRTPLRLTDVILSDNGKGFIRHGAWSAWLEKKFGIIPSLASTLSLPPFPAVINDQKPAIKPRVKTPVIKPIPASRGWLWSVCFAAVLLASHMLNTLWQEKNRHAQFNQQMVPLDNINDFSAQYLARSITQLTDEGKTLTTCVNTFDVTRWGLSQCQTLLSQINRRIESYENIPVFSFAQKLPLFDSNSTKLKLNSQTNEMMMELLSLVEQNKGKKILIVGHSDNTGSSSMNMTLSEQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQDRTRMTEPKPL
>NC_010465.1|WP_002215321.1|1619369_1619852_-|DUF1795-domain-containing-protein
MNAIPSTYSIFEGTFLTPAPVLDRSVNILMFRDPDNHEYNIIINRTLLEEEDTSETFCEKEMDALRNKLPGFQVEGKLLKHEIGPAKLPVVQVANHYLQDGKKFRQVQSIMQLPYHSLTNTDGRSVLIFTLNTDGEFTEYQRKHYVQIINSFNPHVAVAN
>NC_010465.1|WP_011192718.1|1618394_1618997_+|LuxR-family-transcriptional-regulator
MFSVAIKTRNAFYEFGLLSLLKKVLIKEDDMDYSIVPSHEKRASNNANVIFKDLMVIVNIYQENSFIQKNDSNNNKPMMTVNIPFNSSQLGLYDVISKIKKILNIARLNYNMMMKSDLQRRIGLKNYIQLSMTESKVVQLTGKGHSTTDISKILDRSEKTILTHRRNAIRKLGMFNRLEFYKYASLMRNYSNKDAVFICL
>NC_010465.1|WP_072085036.1|1616040_1617153_+|lytic-murein-transglycosylase-B
MVYRYSMRYLAVILPLFTLLSACSSQPTPPVAATPSDSPVQGGFLLEPEHAGQLQNGDFAFNPDTTRFVDKMVREHGFDRQQLHDVLAQTQRLDWVIRLMDKQAPTSRPPSGPNGAWNRYRNKFITPDNVQNGVVFWNQYEGALQRAWEVYGVPPEIIVGIIGVETRWGRVMGKTRIIDALATLSFAYPRRATFFTGELETFLLMARAEGKDPLSLRGSYAGAMGYGQFMPSSFKRYAVDFDGNGHINLWDPVDAIGSVANYFKSHGWTKGAPVAVPANGQVPNLENGFKTRYPISTLAAAGLSPKGPLGDYQEASLLRFDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGEAVGRVRKGESMITQ
>NC_010465.1|WP_012104866.1|1629625_1632283_+|type-VI-secretion-system-ATPase-TssH
MAITRKHLFGKLDATLFKGIESATTICKLRGNPYVELVHWLNQLWHQEDNDLKQIIRYFAVDVDAFERELAQALAKLPVGATSISDFSYHIELATERAWIYASLECLDTRIRSGHLLLALLTTMELRRAFFAIAPSMEKIPLEHLSKDLNFITQASPEANEAASDGSPLYDGALPGEASNAIGAAKSGGTLAQYTTDLTALAREGKIDPVLGRNHEINTMVDILLRRRQNNPLLTGDAGVGKTAIVEGLALAIAAGSMPPALSQVSLLSLDIVALSAGASMKGEFEARLKSVLDEAIAAEKPVILFIDEVHTLIGAGGNAGTGDAANLLKPALARGQLRTIGATTWSEFKRHIEKDPALTRRFQVLQVDEPDENTAISMLRGLIPALEKHHGVWIMDEALQAAVRLSHRYIPARQLPDKAISLLDTACARIAVAQHSQPIELQHLTFQSETAQTELVSLEKARHFGKAQDARTEQLKTSIAEHGEAADKLDQRWQAERELVSAITTIRTALYDLVSQPEPDEEKRRAYQAQLVQLEAQLSQVRTSLPLVQTEVNAEVIASIVADWTGIPVGQMLKDDIRAVMELPQRLEARVIGQPHALMQLGENIMTARAGLSDPRKPLGVFMLVGPSGVGKTETALAIAESMYGGEQNMITINMSEYQESHTVSSLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEIEKAHSDVHELFFQVFDKGQMEDGEGRFIDFKNTILLLTSNVGSELLSNLLADPDTAPDQDGILTALQPELLKVFPAAFLGRVTVIPYLPLQQDALQHIVRLHLDRIGARLYSQHQLTLKYSDEVVDDVVSRCAVSETGARMLIRYIEQNITPKIGKYILGDSDVKPEQIIFVHKNENGFVIALQ
>NC_010465.1|WP_002211580.1|1632493_1633039_+|type-1-fimbrial-protein
MRKLNLAVCAVALSVISSTSYAAAGGTVTFNGKLIADTCQVDTASENITVTLPTLSIQSLAVAEAQDGSKDFEIKVLDCPATLTQVGAHFNAIDSSGVNPATGNLVNKAPTDAAGNVEVRLYNVDDSSQIRVGSTGNMVNIVKVGATPGTANLTYAGGYYATDATTPGEVNAKVEYVLAYN
>NC_010465.1|WP_080513669.1|1633177_1633957_+|fimbria/pilus-periplasmic-chaperone
MLFGSVMFSKIIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPFMVTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTLVDDNQKGRGVKVVNPTPYYISFDSGSITVGAKSVEIITDMVPPFAEKMFFPKLKLLGSTSISKMNYKILNDYGAAIDEELSFSQGQGVLVSKKK
>NC_010465.1|WP_012303909.1|1634084_1636757_+|fimbrial-biogenesis-outer-membrane-usher-protein
MNRTDIACYIENNIGKLNYLSYKASLSVAVIFIGSVLLVTKSISAVPMSQDTNESAAVIPVEFNADFIHGGGVDVMRFMHENPVAPGVYDVTVIINGKNRGKHRIRFELSEGESTAEPCFTLEQLDSIGLKIETSDTDLLVNGKAAPKDQCYNLRALIKDSHVNYNSGDLELSLTVPQFNLVHHPRGYIDSSLWDAGGTVGFLDYNSNVYSIFNGRSNSDVGSDNSNSYNSNIGLSAGINLGEWRFRKRLNTTWSNSSGMHTQNLYGYAATDITALKSQLTIGDTNTQGSLFDSYALRGVLLASDTRMLPEGIRNYSPIVRGIAETNARVTVTQRGQIIYETVVTPGAFELTDIGTMSYGGDLQMTITESDGRTRIQRIPFSAPPMLLYQGVSRFDFSAGQLNDSSINHNPAIVQGAYHYGLGNTYTLYGGAQVAENYRSVAIGNAFNTPLGGVSMDITHAKSELAGDRRSSGNSYKIDYSKYVGETDTNLTLAAYRYSSGGYYSFREASLDRYGNSNGIDEIDFRTRNRLSLSVSQRVADNMSVNLNSSLYSYWGNQDASQQYSVGFNHSLRYFSYTVSAIRTSNSGNSSNGDNDREYENSYMLAVSIPIGGSGKNKPLFSSLSTMVSHSEAGDTQLQLTTSGSRGDQNELTYGIGTSYGNRNDASSEQSVIGNIGYQSSVGQLGMTASANNNASRQLSVSASGSLVAHQGGVIAGPRLGDAPFAIINAQGAGGAKVFNGRGAKIDSNGYALVPSLTPYRENTIAIDYKDLPETVDILENHKVVVPRMGAMIPVKMKTMTGNPMMLIVRDENKEFLPIGTDLLDADGVSQSIVGQGGMAFIRGWDPVSQPITATLNGGIDKCVIKPDAKIDTATKTAQIIQLEVICLRR
>NC_010465.1|WP_011192708.1|1636741_1637350_+|type-1-fimbrial-protein
MSSSLKNKVAQKPIALLLLLTAVFIAQSQPAQAASSCAGTADCHIQVSFGGEYVEDTCEVSINGASSAESVSLPTLSTSKLNIDGAEAGNQAFQIALKLCPANRSVDLRFTAADSSRNPDVVTGNLQNELGDDYSLSVQVRLSKATGQQMFVGREDSVQEYIIPATGEDITHYFLAGYYAKGTNAVTPGQVKATAGIELVYK
>NC_010465.1|WP_002211575.1|1637455_1637980_+|type-VI-secretion-system-contractile-sheath-small-subunit
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLASAPKAKQSAVDTPQ
>NC_010465.1|WP_002211574.1|1638003_1639506_+|type-VI-secretion-system-contractile-sheath-large-subunit
MSTQDAKTKQATVASATEYSDFNTLLTKEFKAKSEQTIAAVEGAVKTLAEQALANSVTVSDDAYKSIASIIAEIDRKLSDQINLILHHQEFQSLESAWRGLHYLVNNTETDEKLRLRFLDISKDELRRNMKRYKGVAWDQSPLFKKIYEEEYGQLGGEPYGCLVADYYFDHTAPDVDLLASIGKVAASAHVPFITGAAPSVLQMESWQELSNPRDLTKIFTQNLEYAAWNSLRQSEDSRYIGLAMPRFLSRLPYGINTNPVDAFHFEETTDGADHSKYVWSNAAYAMAVNINRSFKEYGWCTLIRGVESGGVVEGLPCHTFPTDDGGIDMKCPTEIAISDRREAELAKNGFIPLVHRKNTDYAAFIGAQSLQKPAEYYDSDATANANLSARLPYLFACSRFAHYLKCIVRDKIGSFKERDEMQRWLNDWVMNYVDGDPANSSLETKARRPLAAAEVIVEEVEGNPGYYQAKFFLRPHFQLEGLTVSLRMVAKLPSLKDVA
>NC_010465.1|WP_002211573.1|1639838_1640324_+|type-VI-secretion-system-tube-protein-Hcp
MAQDMFIKIDGIEGESLDANHKNEIQVLAWNWDVAQHSNMHSGSGGGSGKASVSDFCFAHYIDKASPNLLSYCLLGKHIKNVQFVLRKAGGDPLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQNAEGHKSGVISANYDVKANMHS
>NC_010465.1|WP_002211572.1|1640597_1641137_+|type-VI-secretion-system-lipoprotein-TssJ
MNKSIRGVYRATQYLFLVLVTLLTIACSSKVQPEKAEKLTVEIATAADINPNDKGVANPLRIALYTLKSTDEFQSSDFFTITEENTPSLKEQMDNVFDRIMLPSETKKIELTLDAGVTAIGIVAAYREIEQAEWKAVIYPLPKKRVDPWYKKMWPGQDQQDPIMKVRVERLSISIKEMD
>NC_010465.1|WP_002211571.1|1641140_1642490_+|type-VI-secretion-system-baseplate-subunit-TssK
MRTNKVVWSEGLFLRPQLFQQQERYLEYYAHKRAATITPFFWGFAQYEIDREALSYGKLVLRSGKGVLPDGTPFDIPGHAELPEPLTITPEHLGKLIYLAVPLRLDNSDETIFDEHDMSSLARFYAYEAALNDTNAIRQGPKPVQLSRLRLRLVSEGEMTESWIGLPLTKVRAIQPDGSVLLHTEDYIPPVTGYAASSLLSEWLTHLNGLVKMRAEMLANRLSNSDGKASASAEIVDYLLLQIFNKYEPILDHLRHIPELPPITLYQELAKFSGELSTFIRTKTRRPRPAPGYDHAKLYASIRPLVDEVHELLNQILVRAGQMIPLETKGNGVWSASVLPNELRSFSNLVLAVHAQLPMDVLQHQFSVQTKISAPQQLHELVRSHLPGLELQRLPVPPRQIPYSAGYVYFELIKNGPFWDKVSNAGAIALHVAGDFPALKMELWGIRDS

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Crispr_ID: NC_010465_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010465_2

1821347-1824138

TypeI-F

I-F

Consensus_repeat	Method
TAGTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	PILER-CR

46 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NC_010465_2

>merge|NC_010465|2|1821347-1824138|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAACTACTAACCCAGATTATTTAATGAATGACATAGTTCACTGCCGCACAGGCAGCTTAGAAAAATTATTACTGTTGATAAACTTATCGATACTGGTTCACTGCCGCACAGGCAGCTTAGAAATACTCTGAAACTACGGAGTGCGATTATATTTCGTTCACTGCCGCACAGGCAGCTTAGAAACTACTAACCCAGATTATTTAATGAATGACATAGTTCACTGCCGCACAGGCAGCTTAGAAAACTTACATCAAAAACATTTCTAGATGCCCATGGTTCACTGCCGCACAGGCAGCTTAGAAACGGTTGGGCCATCTCGTGCACTGACCTGATAGCGTTCACTGCCGCACAGGCAGCTTAGAAATGCTGCAAACTTAGCTACTTCAGGCAAACATAGTTCACTGCCGCACAGGCAGCTTAGAAAATCCGCATGCATTCGTTGAAGCCACTCAATGCGTTCACTGCCGCACAGGCAGCTTAGAAAAAGTAACGAATAGGCGCTATTCCAGCTCCCGCGTTCACTGCCGCACAGGCAGCTTAGAAATTGATATGGTCATGCGGGGTTATCACATTGGCGTTCACTGCCGCACAGGCAGCTTAGAAAATTACCGGCAGTCAATCTGCTGAGGAATAGTTGTTCACTGCCGCACAGGCAGCTTAGAAATAAAAATACTGTAGTAAACAATACTTTTAGTGGTTCACTGCCGCACAGGCAGCTTAGAAAAAGTTAAACAGTATGTGGACGATGAAATAAGTAGTTCACTGCCGCACAGGCAGCTTAGAAAGCCCCAAGTACCACCAATAGACTCCCAATACTGTTCACTGCCGCACAGGCAGCTTAGAAACAGTCTGGCGGCGCATTATCTGGTTTTATGTATGTTCACTGCCGCACAGGCAGCTTAGAAACTATCAGCTTCGAATACAGAGCGCAGATAGAAGTTCACTGCCGCACAGGCAGCTTAGAAAACTCAGAAATATTTTTATTTGGCCCTATTTTTGTTCACTGCCGCACAGGCAGCTTAGAAAAGAGAGTCCGCTACGGCTGGCAATGATTGTATGTTCACTGCCGCACAGGCAGCTTAGAAATGATAATAAAACAGGTTTTTTGAGTCCATTTGGTTCACTGCCGCACAGGCAGCTTAGAAAACACGATTCAACTACAAAAATGACTCGTTTTAGTTCACTGCCGCACAGGCAGCTTAGAAAGTGTAGACGCTTATGCTCAGGTTCTACTAATAGTTCACTGCCGCACAGGCAGCTTAGAAATATCTCGGCTGTGAAGAGGTCGAATACACCGAGTTCACTGCCGCACAGGCAGCTTAGAAAGTTAGCGCCACCGGTCTTAATAACGCTACAACGTTCACTGCCGCACAGGCAGCTTAGAAACCCTCTATGTTTGACTCACTACACTCTGAGGGGCTCACTGCCGCACAGGCAGCTTAGAAAGTGCTAGCTAATCACGCTAGTAGTGTGCAAGGGTTCACTGCCGCACAGGCAGCTTAGAAATTCTCCGGCTCGGCGGCTAGCTGCCTGATTATTGTTCACTGCCGCACAGGCAGCTTAGAAAATGAAACATGCAATCAGCACGGCAATAGATTTGTTCACTGCCGCACAGGCAGCTTAGAAAACAGGAAAAAGATGAAACCGAGAGGCTTGAGGGTTCACTGCCGCACAGGCAGCTTAGAAATTCACACACTGCAAATGGACCTTATTTCTAATGTTCACTGCCGCACAGGCAGCTTAGAAAACCGTGCAAGTCTGGCGGGTTGGTTTCGCCACGTTCACTGCCGCACAGGCAGCTTAGAAAGTTTTAATGTGAGAAATAGAGCGCATCCACGCGTTCACTGCCGCACAGGCAGCTTAGAAAAATCTGGATAGCGCATATTTATCCTGTTTATTGTTCACTGCCGCACAGGCAGCTTAGAAAATGGTGTCATCATCAATAATAAAACCAAATGAGTTCACTGCCGCACAGGCAGCTTAGAAATTTATTAATTGAGTTTGCGCGTATACCCATTTGTTCACTGCCGCACAGGCAGCTTAGAAACATTAATAGAGGTATAAAAGGGATCATATTATGTTCACTGCCGCACAGGCAGCTTAGAAAATAGACTCCCAATACTCACCCAACAATTTAAAGTTCACTGCCGCACAGGCAGCTTAGAAAATTATAATAATCGTGATTGTCTTTAAACGCTAGTTCACTGCCGCACAGGCAGCTTAGAAAAGTGTTCTGTATTAATTTGCCTTCACATCTAAGTTCACTGCCGCACAGGCAGCTTAGAAAAAGTTAAACAGTATGTGGACGATGAAATAAGTGTTCACTGCCGCACAGGCAGCTTAGAAAAATTGAAATAATGGTTACTGGCAACGGGCAAGGTTCACTGCCGCACAGGCAGCTTAGAAAATTAAAGAATAAATTGTATTCTAAATAGTTGTGTTCACTGCCGCACAGGCAGCTTAGAAATACAGGAGGTGATCTAAATCTCAATCCGGTAGGTTCACTGCCGCACAGGCAGCTTAGAAAACGTAAACGAGAATATAGACACCTTCCTGATCGTTCACTGCCGCACAGGCAGCTTAGAAAGCTAATCATGCTGCTAATGGTGCCGCGCGAGAGTTCACTGCCGCACAGGCAGCTTAGAAAACTAATAGTTGGCCCGCTGTAGGCTCGTCCGCGTTCACTGCCGCACAGGCAGCTTAGAAAATCCGGCAGCGCATCAAACTCAAGAACATCGCGTTCACTGCCGCACAGGCAATAATCAAA

>NC_010465|2|1|1821347-1821494|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAACT	ACTAACCCAGATTATTTAATGAATGACATA
GTTCACTGCCGCACAGGCAGCTTAGAAAAA	TTATTACTGTTGATAAACTTATCGATACTG
GTTCACTGCCGCACAGGCAGCTTAGAAATACTCTGAAACTACGGAGTGCGATTATATTTCGTTCACTGCCGCACAGGCAGCTTAGAAACTACTAACCCAGATTATTTAATGAATGACATAGTTCACTGCCGCACAGGCAGCTTAGAAA	ACTTACATCAAAAACATTTCTAGATGCCCATG
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGGTTGGGCCATCTCGTGCACTGACCTGATAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGCTGCAAACTTAGCTACTTCAGGCAAACATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCGCATGCATTCGTTGAAGCCACTCAATGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTAACGAATAGGCGCTATTCCAGCTCCCGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGATATGGTCATGCGGGGTTATCACATTGGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTACCGGCAGTCAATCTGCTGAGGAATAGTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAAAAATACTGTAGTAAACAATACTTTTAGTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTTAAACAGTATGTGGACGATGAAATAAGTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCCCCAAGTACCACCAATAGACTCCCAATACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAGTCTGGCGGCGCATTATCTGGTTTTATGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTATCAGCTTCGAATACAGAGCGCAGATAGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTCAGAAATATTTTTATTTGGCCCTATTTTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAGAGTCCGCTACGGCTGGCAATGATTGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGATAATAAAACAGGTTTTTTGAGTCCATTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACACGATTCAACTACAAAAATGACTCGTTTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTGTAGACGCTTATGCTCAGGTTCTACTAATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATCTCGGCTGTGAAGAGGTCGAATACACCGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTAGCGCCACCGGTCTTAATAACGCTACAAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCCTCTATGTTTGACTCACTACACTCTGAGGG
GCTCACTGCCGCACAGGCAGCTTAGAAA	GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCTCCGGCTCGGCGGCTAGCTGCCTGATTATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGAAACATGCAATCAGCACGGCAATAGATTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACAGGAAAAAGATGAAACCGAGAGGCTTGAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCACACACTGCAAATGGACCTTATTTCTAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACCGTGCAAGTCTGGCGGGTTGGTTTCGCCAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTTTAATGTGAGAAATAGAGCGCATCCACGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATCTGGATAGCGCATATTTATCCTGTTTATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGGTGTCATCATCAATAATAAAACCAAATGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTATTAATTGAGTTTGCGCGTATACCCATTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CATTAATAGAGGTATAAAAGGGATCATATTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAGACTCCCAATACTCACCCAACAATTTAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTATAATAATCGTGATTGTCTTTAAACGCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTGTTCTGTATTAATTTGCCTTCACATCTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTTAAACAGTATGTGGACGATGAAATAAGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATTGAAATAATGGTTACTGGCAACGGGCAAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTAAAGAATAAATTGTATTCTAAATAGTTGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACAGGAGGTGATCTAAATCTCAATCCGGTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACGTAAACGAGAATATAGACACCTTCCTGATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTAATCATGCTGCTAATGGTGCCGCGCGAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTAATAGTTGGCCCGCTGTAGGCTCGTCCGC


>NC_010465|2|2|1821347-1824138|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTACTAACCCAGATTATTTAATGAATGACATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATTATTACTGTTGATAAACTTATCGATACTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACTCTGAAACTACGGAGTGCGATTATATTTC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTACTAACCCAGATTATTTAATGAATGACATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTTACATCAAAAACATTTCTAGATGCCCATG
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGGTTGGGCCATCTCGTGCACTGACCTGATAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGCTGCAAACTTAGCTACTTCAGGCAAACATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCGCATGCATTCGTTGAAGCCACTCAATGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTAACGAATAGGCGCTATTCCAGCTCCCGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGATATGGTCATGCGGGGTTATCACATTGGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTACCGGCAGTCAATCTGCTGAGGAATAGTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAAAAATACTGTAGTAAACAATACTTTTAGTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTTAAACAGTATGTGGACGATGAAATAAGTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCCCCAAGTACCACCAATAGACTCCCAATACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAGTCTGGCGGCGCATTATCTGGTTTTATGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTATCAGCTTCGAATACAGAGCGCAGATAGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTCAGAAATATTTTTATTTGGCCCTATTTTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAGAGTCCGCTACGGCTGGCAATGATTGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGATAATAAAACAGGTTTTTTGAGTCCATTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACACGATTCAACTACAAAAATGACTCGTTTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTGTAGACGCTTATGCTCAGGTTCTACTAATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATCTCGGCTGTGAAGAGGTCGAATACACCGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTAGCGCCACCGGTCTTAATAACGCTACAAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCCTCTATGTTTGACTCACTACACTCTGAGGG
GCTCACTGCCGCACAGGCAGCTTAGAAA	GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCTCCGGCTCGGCGGCTAGCTGCCTGATTATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGAAACATGCAATCAGCACGGCAATAGATTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACAGGAAAAAGATGAAACCGAGAGGCTTGAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCACACACTGCAAATGGACCTTATTTCTAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACCGTGCAAGTCTGGCGGGTTGGTTTCGCCAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTTTAATGTGAGAAATAGAGCGCATCCACGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATCTGGATAGCGCATATTTATCCTGTTTATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGGTGTCATCATCAATAATAAAACCAAATGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTATTAATTGAGTTTGCGCGTATACCCATTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CATTAATAGAGGTATAAAAGGGATCATATTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAGACTCCCAATACTCACCCAACAATTTAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTATAATAATCGTGATTGTCTTTAAACGCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTGTTCTGTATTAATTTGCCTTCACATCTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTTAAACAGTATGTGGACGATGAAATAAGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATTGAAATAATGGTTACTGGCAACGGGCAAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTAAAGAATAAATTGTATTCTAAATAGTTGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACAGGAGGTGATCTAAATCTCAATCCGGTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACGTAAACGAGAATATAGACACCTTCCTGATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTAATCATGCTGCTAATGGTGCCGCGCGAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTAATAGTTGGCCCGCTGTAGGCTCGTCCGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCGGCAGCGCATCAAACTCAAGAACATCGC
GTTCACTGCCGCACAGGCAATAATCAAA

>NC_010465|2|1|1821347-1824138|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTACTAACCCAGATTATTTAATGAATGACATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATTATTACTGTTGATAAACTTATCGATACTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACTCTGAAACTACGGAGTGCGATTATATTTC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTACTAACCCAGATTATTTAATGAATGACATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTTACATCAAAAACATTTCTAGATGCCCATG
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGGTTGGGCCATCTCGTGCACTGACCTGATAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGCTGCAAACTTAGCTACTTCAGGCAAACATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCGCATGCATTCGTTGAAGCCACTCAATGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTAACGAATAGGCGCTATTCCAGCTCCCGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGATATGGTCATGCGGGGTTATCACATTGGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTACCGGCAGTCAATCTGCTGAGGAATAGTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAAAAATACTGTAGTAAACAATACTTTTAGTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTTAAACAGTATGTGGACGATGAAATAAGTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCCCCAAGTACCACCAATAGACTCCCAATACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAGTCTGGCGGCGCATTATCTGGTTTTATGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTATCAGCTTCGAATACAGAGCGCAGATAGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTCAGAAATATTTTTATTTGGCCCTATTTTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAGAGTCCGCTACGGCTGGCAATGATTGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGATAATAAAACAGGTTTTTTGAGTCCATTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACACGATTCAACTACAAAAATGACTCGTTTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTGTAGACGCTTATGCTCAGGTTCTACTAATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATCTCGGCTGTGAAGAGGTCGAATACACCGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTAGCGCCACCGGTCTTAATAACGCTACAAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCCTCTATGTTTGACTCACTACACTCTGAGGG
GCTCACTGCCGCACAGGCAGCTTAGAAA	GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCTCCGGCTCGGCGGCTAGCTGCCTGATTATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGAAACATGCAATCAGCACGGCAATAGATTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACAGGAAAAAGATGAAACCGAGAGGCTTGAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCACACACTGCAAATGGACCTTATTTCTAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACCGTGCAAGTCTGGCGGGTTGGTTTCGCCAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTTTAATGTGAGAAATAGAGCGCATCCACGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATCTGGATAGCGCATATTTATCCTGTTTATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGGTGTCATCATCAATAATAAAACCAAATGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTATTAATTGAGTTTGCGCGTATACCCATTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CATTAATAGAGGTATAAAAGGGATCATATTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAGACTCCCAATACTCACCCAACAATTTAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTATAATAATCGTGATTGTCTTTAAACGCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTGTTCTGTATTAATTTGCCTTCACATCTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTTAAACAGTATGTGGACGATGAAATAAGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATTGAAATAATGGTTACTGGCAACGGGCAAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTAAAGAATAAATTGTATTCTAAATAGTTGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACAGGAGGTGATCTAAATCTCAATCCGGTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACGTAAACGAGAATATAGACACCTTCCTGATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTAATCATGCTGCTAATGGTGCCGCGCGAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTAATAGTTGGCCCGCTGTAGGCTCGTCCGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCGGCAGCGCATCAAACTCAAGAACATCGC
GTTCACTGCCGCACAGGCAATAATCAAA

>NC_010465|2|2|1821587-1824078|PILER-CR
	ACTAACCCAGATTATTTAATGAATGACATA
GTTCACTGCCGCACAGGCAGCTTAGAAAAA	TTATTACTGTTGATAAACTTATCGATACTG
GTTCACTGCCGCACAGGCAGCTTAGAAATACTCTGAAACTACGGAGTGCGATTATATTTCGTTCACTGCCGCACAGGCAGCTTAGAAACTACTAACCCAGATTATTTAATGAATGACATAGTTCACTGCCGCACAGGCAGCTTAGAAA	ACTTACATCAAAAACATTTCTAGATGCCCATG
GTTCACTGCCGCACAGGCAGCTTAGAAA	CGGTTGGGCCATCTCGTGCACTGACCTGATAGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGCTGCAAACTTAGCTACTTCAGGCAAACATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCGCATGCATTCGTTGAAGCCACTCAATGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTAACGAATAGGCGCTATTCCAGCTCCCGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGATATGGTCATGCGGGGTTATCACATTGGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTACCGGCAGTCAATCTGCTGAGGAATAGTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAAAAATACTGTAGTAAACAATACTTTTAGTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTTAAACAGTATGTGGACGATGAAATAAGTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCCCCAAGTACCACCAATAGACTCCCAATACT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CAGTCTGGCGGCGCATTATCTGGTTTTATGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CTATCAGCTTCGAATACAGAGCGCAGATAGAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTCAGAAATATTTTTATTTGGCCCTATTTTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGAGAGTCCGCTACGGCTGGCAATGATTGTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TGATAATAAAACAGGTTTTTTGAGTCCATTTG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACACGATTCAACTACAAAAATGACTCGTTTTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTGTAGACGCTTATGCTCAGGTTCTACTAATA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TATCTCGGCTGTGAAGAGGTCGAATACACCGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTAGCGCCACCGGTCTTAATAACGCTACAAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCCTCTATGTTTGACTCACTACACTCTGAGGG
GCTCACTGCCGCACAGGCAGCTTAGAAA	GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCTCCGGCTCGGCGGCTAGCTGCCTGATTATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGAAACATGCAATCAGCACGGCAATAGATTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACAGGAAAAAGATGAAACCGAGAGGCTTGAGG
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCACACACTGCAAATGGACCTTATTTCTAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACCGTGCAAGTCTGGCGGGTTGGTTTCGCCAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTTTTAATGTGAGAAATAGAGCGCATCCACGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATCTGGATAGCGCATATTTATCCTGTTTATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATGGTGTCATCATCAATAATAAAACCAAATGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTTATTAATTGAGTTTGCGCGTATACCCATTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CATTAATAGAGGTATAAAAGGGATCATATTAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATAGACTCCCAATACTCACCCAACAATTTAAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTATAATAATCGTGATTGTCTTTAAACGCTA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGTGTTCTGTATTAATTTGCCTTCACATCTAA
GTTCACTGCCGCACAGGCAGCTTAGAAA	AAGTTAAACAGTATGTGGACGATGAAATAAGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	AATTGAAATAATGGTTACTGGCAACGGGCAAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTAAAGAATAAATTGTATTCTAAATAGTTGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TACAGGAGGTGATCTAAATCTCAATCCGGTAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACGTAAACGAGAATATAGACACCTTCCTGATC
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCTAATCATGCTGCTAATGGTGCCGCGCGAGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACTAATAGTTGGCCCGCTGTAGGCTCGTCCGC
GTTCACTGCCGCACAGGCAGCTTAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010465.1\|WP_012303959.1\|1815717_1816656_+\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NC_010465.1\|WP_002211866.1\|1832243_1832798_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09674_cas6f_CAS-I-F	gnl\|CDD\|378224
NC_010465.1\|WP_002227890.1\|1819764_1821012_-\|mechanosensitive-ion-channel	unknown	unknown	gnl\|CDD\|223740
NC_010465.1\|WP_011192632.1\|1814635_1815691_+\|glycosidase	unknown	unknown	gnl\|CDD\|350124
NC_010465.1\|WP_002210200.1\|1810081_1811122_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NC_010465.1\|WP_002230953.1\|1816778_1817894_+\|hypothetical-protein	unknown	unknown	unknown
NC_010465.1\|WP_011192622.1\|1833905_1834409_-\|formaldehyde-activating-enzyme	unknown	unknown	gnl\|CDD\|224708
NC_010465.1\|WP_002210199.1\|1811393_1812680_+\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567
NC_010465.1\|WP_012303964.1\|1830260_1831211_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|187807
NC_010465.1\|WP_012104939.1\|1812788_1813664_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_010465.1\|WP_012104947.1\|1832875_1833895_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381305
NC_010465.1\|WP_002210197.1\|1813664_1814489_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_010465.1\|WP_011192624.1\|1831228_1832233_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NC_010465.1\|WP_012303965.1\|1834455_1835814_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NC_010465.1\|WP_012303963.1\|1828917_1830264_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09675_cas8f_CAS-I-F	gnl\|CDD\|187866
NC_010465.1\|WP_012303962.1\|1825474_1828762_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NC_010465.1\|WP_072080408.1\|1824491_1825478_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NC_010465.1\|WP_002210201.1\|1808676_1810065_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|185312
NC_010465.1\|WP_002210193.1\|1817932_1819207_+\|hypothetical-protein	unknown	unknown	unknown
NC_010465.1\|WP_002216551.1\|1835937_1836147_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010465.1\|WP_012303959.1\|1815717_1816656_+\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	7.70695e-174
NC_010465.1\|WP_002211866.1\|1832243_1832798_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.71931e-94
NC_010465.1\|WP_002227890.1\|1819764_1821012_-\|mechanosensitive-ion-channel	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	2.49285e-32
NC_010465.1\|WP_011192632.1\|1814635_1815691_+\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	1.45937e-164
NC_010465.1\|WP_002210200.1\|1810081_1811122_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	1.56156e-83
NC_010465.1\|WP_011192622.1\|1833905_1834409_-\|formaldehyde-activating-enzyme	gnl\|CDD\|224708	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy production and conversion].	3.6884e-91
NC_010465.1\|WP_002210199.1\|1811393_1812680_+\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	2.85244e-50
NC_010465.1\|WP_012303964.1\|1830260_1831211_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|187807	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; predicted Cas5 ortholog.	3.18547e-153
NC_010465.1\|WP_012104939.1\|1812788_1813664_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	8.70999e-58
NC_010465.1\|WP_012104947.1\|1832875_1833895_-\|aldo/keto-reductase	gnl\|CDD\|381305	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins. Escherichia coli YajO is the prototype of this family. It is an uncharacterized aldo/keto reductase family oxidoreductase.	5.49557e-143
NC_010465.1\|WP_002210197.1\|1813664_1814489_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.72016e-69
NC_010465.1\|WP_011192624.1\|1831228_1832233_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NC_010465.1\|WP_012303965.1\|1834455_1835814_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.01735e-50
NC_010465.1\|WP_012303963.1\|1828917_1830264_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NC_010465.1\|WP_012303962.1\|1825474_1828762_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NC_010465.1\|WP_072080408.1\|1824491_1825478_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NC_010465.1\|WP_002210201.1\|1808676_1810065_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0

>NC_010465.1|WP_002227890.1|1819764_1821012_-|mechanosensitive-ion-channel
MMQQRISQWLERLGMEFSDVMSLTMVIGLILLISVMIHLVLHRVVLAALQRRGQQSQRIWQQAITKHKLFQRVALLLQGIIINLQAVLWLQNGSQTQAVIVTAAQVWIMAFALLALFSLLDTLLALLRQSSVAHQLPLRGICQGLKLVAAIFIGIMIVSLLMGRSPLLLLSGLGAMTAVLMLVFKDPILGLVAGIQLSANDMLKIGDWLEMPKYGADGAVTDIGLTTVKVRNWDNTVTTIPTYALISDSFKNWRSMSESGGRRIKRSINIDTTSVHFLSEQEQQRLTLNPLLQHYLSEKSQELNQYNQQIALDLSSPLNGRRLTNIGTLRAYLVAYLRAHLGIHQSMTLMVRQLAPTPEGLPLEVYAFTNTTIWAEYEGIQADIFDHIFAVVSEFDLRIHQTPSGNDMRSMLAKV
>NC_010465.1|WP_002210193.1|1817932_1819207_+|hypothetical-protein
MKLLNTLVCIIGLTSFSSSAKLVNAEHLDALYQKVTVANKTELGLIHIYSEFPDYRWVKDPIEGVSAIDDVARAAIFYQRQYQATGSAADLEKVKSLVEFILYQRADNGYFYNFIYPDHSINKEYKTSVAEPNWWTWRALWALTQVYPTLVKTDNALAQRTRETIFATIDVIYKDFNFKQTRGEKEGVAVPEWLPHTAGDQASVLLMALSDAQALEAKPEIEKMMRSLAAGIMLMQVKDTSSPVNGAFLSWQNLWHGYGNSQAYALLVAGNRLGDRDMIKAAFNELDHFHPWLISNGLLNEFTVRQQGEKVTLIEQKKFSQIAYIIRPMVFANIKAWEISRDAVYLERAVDLSLWFFKNNPAQAQMYYPVTGIAFDGIDSATTVNKNSGAESTIEALLTLQLIESIPDAKRMLESALEKRNIKQ
>NC_010465.1|WP_002230953.1|1816778_1817894_+|hypothetical-protein
MKHKKYLPLFLMAGICSVAQADNSPDVVSANNMDNRTFFAGDKIRIVKDGGETIEAVVELSDDNIGIVRIPKDEKAYFHGNWLAEYKIEHFRNEGRSTNSRPVHEIVFADGRVNFGDTGWNTGFLLKQVRFTSDSRNESNHKVDFRMVEMEIRPAWSKSIDKHWFMFEGIYLGKTGYEKNRTTGGDNNIGGDGYGFRPYYRYQVSDRLSVNTDVKMLVEDKDARGADNGRFQFYEALVNVNYRVADNVHAGIEVFRKEGQDFNHNGTKTANVLEQELRPWVAWNMGKNNFLFKMEPQLRRIGGQDGYRETSKAQKYIFNYSYPIADRVYLVAEYFYRVEHDKKFWDRGVRDNKSYSDTTTHFGKLGINYIF
>NC_010465.1|WP_012303959.1|1815717_1816656_+|DUF1861-family-protein
MMRHAPPASVAQLFADYQKRTAHNTFSTGRLEFTGVGDKDVYNITAPFTSAGQVVIAGRVEARDSEHSTIVFFREQQGQWAPVENAPTFQLQDPFFTWIEDELIFGGVEINPHPDNPGQLIWHTVFFRGRDIHSLTRFASGPPGMKDIRLCHIQQGRIGVFTRPQGKIGGRGTIGYVEINNLEALTPETITGAELFEQQFNSEEWGGVNETHLLCDGTIGLLSHIACFDQHGRRHYYPGVFIFNPDTRNYTPIKIIAARDNFLPGAAKRPDLVDVIFPGGLIVLPNNGWRLYVGASDAEAHWIDIEDPFSGF
>NC_010465.1|WP_011192632.1|1814635_1815691_+|glycosidase
MIRYSGNPLITPQDITPSHPGFKVECAFNAGITKLGDETIMLIRIAESVIPESEGITVVPLLMEISGHWQVTTRVFKHDDPAYDFSDPRLISDIADPSTVYLTSLSHLRVARSHDGVTFVVDDQPFIFPANGDEAFGCEDARITQIDGAYYINYSAVSAKGICTALAVTQDFTDVKRLGLIFCPDNRDACLFPEKINGKYMTLHRPAPKHFGKPEIWLASSLDLLHWGDHRHLLGTSQDPWDALKLGGGAQMLKTEKGWLQIYHGVDATQRYSLGALLLDLEQPTKILAKSPVPLLQPQAPYELHGFFGNVVFTCGALIENDSLRVYYGAADECMCLAEMPLAQLWQHLSV
>NC_010465.1|WP_002210197.1|1813664_1814489_+|carbohydrate-ABC-transporter-permease
MKKNINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTGLFGSAYSLDNYRFLFENSGRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQSLFRNLLFLQMVFPASMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLWQIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVYVGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLSLK
>NC_010465.1|WP_012104939.1|1812788_1813664_+|sugar-ABC-transporter-permease
MTFLKLKDKQVGSVLAASYLGYTSIFWFYPFIWLAVLSLTEWRFVGIPTFNGLNNFILVMQDPLFWKSMLNVMRFLMYYLPIVFISSFLFAFGLQKLKYGRTFVALSFLLANVSSGVAYSIVFSKIFSQNGPLNTFLYDWFGFTLPWLTSPDFAMLSIALVVTWKFVGYYGLILFSGLNSIPKEIYSAAELDNTRTIKRLFHITLPMINPQLIMVLVLAITVSFAIFTEPYLITGGGPLNSTTTPMIVMYETAFMKMQPSWAATMSIFIALISFGIILGVRKLLERKVEIV
>NC_010465.1|WP_002210199.1|1811393_1812680_+|carbohydrate-ABC-transporter-substrate-binding-protein
MLEKMKNTLISLAIASSCVVFTGCDNDTASAKNEKQDITLWIAPNNVQEAFWSEVVGEWNKQPDKKKVVFSTIPAAGSSEEAIMNAIASDRAPDISENIFTGFGSQLADLGQVVDLSTLDGYENLISTRQMTDIMDNWRYNGKNYILPIYMNPVLFWWRGDLLKEQGFSEVPKTYDEVYALSEKYTIPDKRYAIQATSGRNWWDRWFDFIALYYAQSDGKPYIANQQASYDNQAGRDVLDFMHTLFSKKWTLYDFGQDDPLVTGKVLGAVRGPWDISRYQQQYPEILKHIKMGPMLVKEQQDKPHTFADGKGLVLFSHSKVKPEAWEFIQWVFSQPKFDKRWMELTGMPPARADLLTNPFFAEYYQEHPYAAAYAEYVNVAIPPVSSGETVEIQRSMTQMIEKTAFNTATPDEALQQSIKEVNAILKP
>NC_010465.1|WP_002210200.1|1810081_1811122_-|LacI-family-DNA-binding-transcriptional-regulator
MTTGKKRETLKTIAETLNVTHTTVSNVFNRPEKVSPELREKILAYAESINYHGPAGAGRFLRTGKCGTLGVIFNDNLSYVFSDRHDIALMRGIAEECEKNGINIALMPLKTNNALKKRMMGALVDGYILNATYNNDEVVQAALTSGLPVITTDIKLQNFTCVSIDDGAAMQAICHHLLAAGHKKFGIVSFPVKRLPGELTSLAEFSTDYDNGVAFGRISACITALSDAGIDLHTSYVAEQPHSETGGEKAAKALLAKEPGISAIICLSDRFAFGVYQFCQDHNIPVPGQIAITGFDDIDIQDPPVGLTTIRQPTVLKGREAARALISGQLDNDISLDFELVVRDSA
>NC_010465.1|WP_002210201.1|1808676_1810065_-|phosphomannomutase/phosphoglucomutase
MEKLTCFKAYDIRGKLGSELNEEIAYRIGRAYCQWLKPAKVVVGGDARATSVELKNALAKGLMDGGADVIDIGMVGTEEVYFATRFYGVDGGIQVTASHNPIDYNGMKLVKKDAQPISGDNGLYEIQRLAQDNHFAPPGVRGQLETQLVREHYVEHLLSYIDLNALLPMKIVVNAGNGAAGPTLDALEAALAKRKVPISFIKINHQPDSSFPNGIPNPMLPENQWSTRQAVCEHQADLGIAWDGDFDRCFFFDHLGNFIEGYYIVGLLAEKFLLTNNMGKATHNTDKIIHDPRLTWNTIDIVQTLNGTAIESKTGHAFIKDAMRHHDAVYGGEMSAHHYFREFGYCDSGMIPWLLVIELLSKKTTSLFSLIESRKAKFPVSGELNFTVSDPKTKIQQIKQFYADSAIHVTGIDGLSMEFEHWRFNLRSSNTEPLVRLNIETRGDVTLLEQKTAQLTQLLYPK
>NC_010465.1|WP_072080408.1|1824491_1825478_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MAMENAIHSSDLKTILHSKRSNIYYLEYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTVIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANDVEVNVSWLTAQSEYRPTEYLHDWVSFWFDDEKRLAAAVAFQRIRIAQIQQHWLSSHIQRESLFPVNHDQLLFILSRFEQNLANCLTSNDLMVQEAVLTKALYKLAANTVNYGDFTRAKRGGGIDLANRFLDHGNYLAYGLAATATWVIGLPHGLSVLHGKTRRGGLVFDVADLIKDALVLPQAFIAAMQGEEEQEFRQRCISGFQRTEALDVMIDGIKETAALCSQVPR
>NC_010465.1|WP_012303962.1|1825474_1828762_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCHKRALDETRRILDQFAERKGDRTWQTAITQEGLNTLRKLLRRTARRNSAVACHWIKSNNQSELLWIVGNLRRFNAEGTVPTNTTQRDILRSQDENNWHSVETIALLAGIAGLFHDFGKANVLFQQGLQGQGKTYQPYRHEWVSLRLFQAFVEQKNDIQWLTALSQINPADETALMSNLVKDGLDDYTNPLAALPPLAKTIAWLILSHHRLPVYPSKDYHRPPKVEEIDDWLHQQLMPVWNSTNMDSGDWREKDKLDVWRFPHGTPLQSAEWCKKAQKFAKRALRQPSLVNDGHLNQRFTSHMARLVLMLADHHYSSLPATPGWQDKNYQVFANTHNKMRDANAHSKTIEMKQRLDEHNIGVGQNALLLGRSLPHIRKTLPAITRHKGFKQRSVQEKYRWQDKAFDLAVTLRERSLQQGFFGVNMASTGCGKTFANARIMYGLSDEKQGCRFSVALGLRTLTLQTGTALQQKLTLQKDDLAVLIGSQSVLQLYQLNNDKLEPRGTGSQSADKFFSEHQYVSYDGSLDDGRLSTWLSNNDRLKRLLCAPVLVCTIDHLIPATESLRGGKQIAPMLRLLTSDLVLDEPDDFDRNDLPALCRLVNWAGMLGSRVLLSSATLPPALVQALFNAYRAGRADYQQASGQPDTPVNICCAWFDEHGVAQQDIQQSKDFIQHHGDFITRRVGKLSTAEVLRRAELIPVSSASVKNGSVLDAMAAVMRDSMLRLHQAHHQTHPSEKTVSVGVVRMANIDPLVAIAQRLYAMAAPENYRIHYCVYHSQHPLAVRSAIERRLDVTLTRYQPNALWQVAEIEHALQHHPEQHHLFVVLATSVVEVGRDHDYDWALAEPSSMRSFIQLAGRVQRHRQVAPQMANMHILQKNFKALTQKDPAIPVYCKPGFETTRCRLNTHDLDKLLLPSQYKVINAISRIQERTKLEPRDNFVDLEHLSLRLILQGSAEPLKYYAALWWRKQATWSGEQQRCTPFRQSSPDEQHNLWIDDEADKPVFKRLDSDQIEWKVSDGFQDVELTLAVGNSAWIDTDCLRIYQWLAESLNKELNEVSRQFGEVRLPKKDGERWHYHPLLGGFGALD
>NC_010465.1|WP_012303963.1|1828917_1830264_+|type-I-F-CRISPR-associated-protein-Csy1
MEEKGLTAFIVSYIKSREQPKLEAFDKEAEKRLAGLTQAEDIALAQQEIAQQRQELVARYEVRNWLTDAANRAGQISLVTHALKFTHSDAKGSSVFNLPAAENDAIYLSSATLGQPAVDAVGNAAALDVAKLLQTEHNGDSLLACLNRADNSPLAALAENPQQLALWVEGFKQALVDKQLTSHKLAKQFYFPVGPDQYHLLSPLFSSSLAQAMHQRIAEARFSDQSKEAKVAHKAGKWHSEARVIYLKTAVQNIGGTKPQNISYLNSVRGGKVWLLPCGAPPWKNIQKPPIKYRSIFHDRSEFTVLARNNLWQMQQYLLGVKPLSNTMDIRAVRLACSDEIIDILFNYVAEIQNLDGTNGWSDAEDCKLKRSEQLWLDPNRAMDDPVFKLEREKEDWKQEVSQDFGYWLNRWLQHDELVFGYVEQREWSSLFKQRLREFEQGSLETWS
>NC_010465.1|WP_012303964.1|1830260_1831211_+|type-I-F-CRISPR-associated-protein-Csy2
MSSLIVLHQVRVENANAIAGLTYGFPAITHFLGYSHALSRKLQSSHGLTLRGCAVICHHQQVHAYSSGRDYVFSLTRNPLTKEAKTAAFNEEGRMHMTVSLVIECDGTIANGDDGANALEKHLASLCLTQRLAGGTITNIRRVKVINYPETEAATRRLLCHLLPGFALLDRSELLAEHLNQLRQTNPQTEMLDAWLDFSALKIQAIPPQSDTPVESGAPAPWGYVGKPAAGYLVPIVTGYRAISPLYAPGEVDKTRDPHTPFRFVESLYGIGEWRGLHRITDLRQLLWGYHQEGDNYLCRCALPASVDTYLLNDEE
>NC_010465.1|WP_011192624.1|1831228_1832233_+|type-I-F-CRISPR-associated-protein-Csy3
MAKATIKTASVLAFERKLSNSDAMMYAGNWGQTDNWQPIIIKEKAVRGTISNRLKNALASDPVKLDAEIQKANLQRVDVAALPFDTDTLKMSFTLRVLGNLATPSVCNDQEYQAELASVINGYISEQSFSVLAARYAENLANGRFLWRNRVGAEDIKVCITSQTKSYQFDSNEFSLRQFSQPSKELTALAQEIEQGLAGNGFAFFTVDAFVRLGNGQEVFPSQELVLDSNSKKSKVLYQIDGIAALHSQKVGNALRTIDDWYPDATELALGPIAVEPYGSVTSRGKAYRQPKQKMDFYTLLDNWVTKGTVPAVEQQHYVMATLIRGGVFGEKGE
>NC_010465.1|WP_002211866.1|1832243_1832798_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYLDIRVLPDPEFSAQTLLEALFAKLHRALVATIPGRVGVSFPTAGKTLGSQLRLHGSRGDLLELQSAGWLKGLQDYCECSEILPVPADVKHRTIRRVQVKSSAQRLRRRSVSKGWLTEEQARLRIPDSHDKRCDLPFLRLKSRSSEQYFLLFIEQGTLQASATTGEFSAYGLSVNATIPWF
>NC_010465.1|WP_012104947.1|1832875_1833895_-|aldo/keto-reductase
MDYIKLGHCGLQVSRLCLGTMNMGSKQWKPWVFDKAESTPLIKHALDCGINFIDLADFYSAGVGEEVVGRIVKNLMSRDELVLTTKVGYPIGHGPNNQGHSRKHIMASIDASLKRLGTDYIDIYMLHYFDINTPVEETWSAMNDIIHSGKARYTGVSTMFTWQLSKILWCCERNGFAKPINMQLQLNCAYREEEREMIPQCRDQGLGISAFSPLARGLLSCDFSSVRNKTDFFTQEMYADVTSLNIAQSVERVAKNRGITPAQVAQAWVLNHPGTDCMLVGADTIEQINSAVTALRISLNAEENFELERNYTPCDVINDYTAGQRIAREARPPSGIFAP
>NC_010465.1|WP_011192622.1|1833905_1834409_-|formaldehyde-activating-enzyme
MQMYIGEGFAGNGVNAAHINIMIGPRDGVVGQAFAASLASPSQGHCPFIVVIKPNVAAKPMTLYVNKAEIRSELHGRATWGASQAAVAKAVAEALLANLFPPEAEDDWCIITANWVNIDCDDIDEVYRNNYRACTTALHAAMAKTPKRDQLTHALTQLSNPFFTPKA
>NC_010465.1|WP_012303965.1|1834455_1835814_-|MFS-transporter
MQTLPSEKIKMDDVPLNRFHIRIAGLTFGAHFIDGYILGLIGFALIQLKPIMALTPLWEGLLGSAALIGLFLGSLILGWISDYIGRQKIFSFSFVIITLASALQFFASTPEQLFILRVIVGIGIGGDYSVGHTLLAEFSPRKHRGVLLGAFSVIWTFGYVSASFVGHYLSMVSPEAWRWLLSSAALPALLILLVRIGTPESPRWLMGKGREDDAMAIVHKYFGPNVTLIDEEPATSTRRFLSLFGRKYWRRTAFNSLFFVCLVIPYFAIYTFLPSILNVMALSQNFATDLLLNGLLVVGALVGIVLTAFCSRRSFLISSFIFLATCLLLLSILPSNQTFWLIALFAAFTLVMSAVSNLVGVFPAESFPTEVRSMGVGFATSMSRLGSAIGTSLLPLAIVNYGMPVTTTLLAFVLIIGAIVSIAWAPETKGLTLVDASQSATTPRPPSSIIPN
>NC_010465.1|WP_002216551.1|1835937_1836147_+|hypothetical-protein
MVIGDLLTETDRLFQKRTAAMDDLFSSPGPVRLILFVMAMCQPKYKAASAFYAYPSEKKVRDPPLNSYK

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Crispr_ID: NC_010465_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010465_3

2756276-2758104

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTNCCTGTGCGGCAGTGAAC	CRT
GTTCACTGCCGCACAGGTAGCTTAGAAA	PILER-CR

30 spacers

DEDDh

The CRISPR arrays of NC_010465_3

>merge|NC_010465|3|2756276-2758104|CRISPRCasFinder,CRT,PILER-CR
TTATTGGGCTGCCTGTGCGGCAGTGAACAGCTCTCGTCTCCCTGGCCGTCCAGCGTGTAATTTCTAAGCTGCCTGTGCGGCAGTGAATATCCAGTGTCACTGCTGGGAAGGTTTCAAGTTTTTCTAAGCTGCCTGTGCGGCAGTGAACGTTTTTAATTTTCCGTCAGTCTCACCTTTAATTTTCTAAGCTGCCTGTGCGGCAGTGAACATTCAATTCGATTAGTGTTAAGGAACTTGCAGTTTCTAAGCTGCCTGTGCGGCAGTGAACGTTATCTGTGATTGATTTATATGATGTTAAATTTTCTAAGCTGCCTGTGCGGCAGTGAATATGGTTTCACCTGTATCTGGTAATAATCCCTTTTTCTAAGCTGCCTGTGCGGCAGTGAACACCCTCTCCCTTGATTCGAATACCGGCAGTGCTTTCTAAGCTGCCTGTGCGGCAGTGAACTTGGAGTTAATAAGTTTGATATGTATACGATTTTTCTAAGCTGCCTGTGCGGCAGTGAACGTTGTTTTTCCATTAATATCGACAACTTTTTTTTTCTAAGCTGCCTGTGCGGCAGTGAACCCATCTATTTGATAAATTCCAGATTCATTTCTTTTCTAAGCTGCCTGTGCGGCAGTGAACAAACATCAGCGGTCCCGCTGGATGAATATGGTTTTCTAAGCTGCCTGTGCGGCAGTGAACATTAAGTAAGCGTGATGTGTACGGCGGATTCTTTTCTAAGCTGCCTGTGCGGCAGTGAACTGTCATGGACGCAGCGAAGGCGGAGCAAGCATTTTCTAAGCTGCCTGTGCGGCAGTGAACCCGTTACGCCGACTACTGGAACTGTTGCAGAATTTCTAAGCTGCCTGTGCGGCAGTGAACACTGGTTTGGTTCTTGCTCGGTCGGCTGAATTTTTCTAAGCTGCCTGTGCGGCAGTGAACGATATTTCATTTGGTTGTTTATCTAGCTTGTCTTTCTAAGCTACCTGTGCGGCAGTGAACGATTCATATTTCCGACACTCATTAAATAATCTTTTCTAAGCTACCTGTGCGGCAGTGAACTCTTCATGATCGGCAGAGCTGGTTTGTTCGATTTTCTAAGCTACCTGTGCGGCAGTGAACTCAATATACATACAGAAATAGTCCTCGTAAATTTCTAAGCTACCTGTGCGGCAGTGAACGAAAACGTTCTACAGTTTATTGAGTCTGTTAATTTCTAAGCTACCTGTGCGGCAGTGAACGGGTTAGATTATATAATCAGACATTGGGTTTAGTTTCTAAGCTACCTGTGCGGCAGTGAACATTTACGCTGAGATTCTGCGGCGGCGCGGTAATTTCTAAGCTACCTGTGCGGCAGTGAACGTGCTGTTTGTTGATGTCCTGCTCGACGAGGCTTTCTAAGCTACCTGTGCGGCAGTGAACAATGCGTTGATGTAAGCCTCTTTCACCGTGGCGTTTCTAAGCTACCTGTGCGGCAGTGAACTTTTAGGGTCGTGTCTATCAGCCCCTTGATACTTTCTAAGCTACCTGTGCGGCAGTGAACACCTTATTTAATTGGAATGGGTGGGGCTTCATTTTCTAAGCTACCTGTGCGGCAGTGAACTTTGACCTTGATAGCTCGATAGGCAATCAAGATTTCTAAGCTACCTGTGCGGCAGTGAACGAGCAATTTACATTAGAGCTAAAAGATATTGCTTTCTAAGCTACCTGTGCGGCAGTGAACCCTTGCACACTACTAGCGTGATTAGCTAGCACTTTCTAAGCTACCTGTGCGGCAGTGAACATCGGAACCCCTCGATGTTACTATCCGACATATTTCTAAGCTACCTGTGCGGCAGTGAAC

>NC_010465|3|3|2756276-2758104|CRISPRCasFinder
TTATTGGGCTGCCTGTGCGGCAGTGAAC	AGCTCTCGTCTCCCTGGCCGTCCAGCGTGTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAT	ATCCAGTGTCACTGCTGGGAAGGTTTCAAGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTTTTAATTTTCCGTCAGTCTCACCTTTAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTCAATTCGATTAGTGTTAAGGAACTTGCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTATCTGTGATTGATTTATATGATGTTAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAT	ATGGTTTCACCTGTATCTGGTAATAATCCCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCCTCTCCCTTGATTCGAATACCGGCAGTGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGGAGTTAATAAGTTTGATATGTATACGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTGTTTTTCCATTAATATCGACAACTTTTTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCATCTATTTGATAAATTCCAGATTCATTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAACATCAGCGGTCCCGCTGGATGAATATGGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTAAGTAAGCGTGATGTGTACGGCGGATTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTCATGGACGCAGCGAAGGCGGAGCAAGCAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCGTTACGCCGACTACTGGAACTGTTGCAGAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTGGTTTGGTTCTTGCTCGGTCGGCTGAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATATTTCATTTGGTTGTTTATCTAGCTTGTC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GATTCATATTTCCGACACTCATTAAATAATCT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TCTTCATGATCGGCAGAGCTGGTTTGTTCGAT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TCAATATACATACAGAAATAGTCCTCGTAAA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GAAAACGTTCTACAGTTTATTGAGTCTGTTAA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GGGTTAGATTATATAATCAGACATTGGGTTTAG
TTTCTAAGCTACCTGTGCGGCAGTGAAC	ATTTACGCTGAGATTCTGCGGCGGCGCGGTAA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GTGCTGTTTGTTGATGTCCTGCTCGACGAGGC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	AATGCGTTGATGTAAGCCTCTTTCACCGTGGCG
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TTTTAGGGTCGTGTCTATCAGCCCCTTGATAC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	ACCTTATTTAATTGGAATGGGTGGGGCTTCAT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TTTGACCTTGATAGCTCGATAGGCAATCAAGA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GAGCAATTTACATTAGAGCTAAAAGATATTGC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	CCTTGCACACTACTAGCGTGATTAGCTAGCAC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	ATCGGAACCCCTCGATGTTACTATCCGACATA
TTTCTAAGCTACCTGTGCGGCAGTGAAC

>NC_010465|3|2|2756276-2758104|CRT
TTATTGGGCTGCCTGTGCGGCAGTGAAC	AGCTCTCGTCTCCCTGGCCGTCCAGCGTGTAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAT	ATCCAGTGTCACTGCTGGGAAGGTTTCAAGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTTTTAATTTTCCGTCAGTCTCACCTTTAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTCAATTCGATTAGTGTTAAGGAACTTGCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTATCTGTGATTGATTTATATGATGTTAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAT	ATGGTTTCACCTGTATCTGGTAATAATCCCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCCTCTCCCTTGATTCGAATACCGGCAGTGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGGAGTTAATAAGTTTGATATGTATACGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTGTTTTTCCATTAATATCGACAACTTTTTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCATCTATTTGATAAATTCCAGATTCATTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAACATCAGCGGTCCCGCTGGATGAATATGGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTAAGTAAGCGTGATGTGTACGGCGGATTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTCATGGACGCAGCGAAGGCGGAGCAAGCAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCGTTACGCCGACTACTGGAACTGTTGCAGAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTGGTTTGGTTCTTGCTCGGTCGGCTGAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATATTTCATTTGGTTGTTTATCTAGCTTGTC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GATTCATATTTCCGACACTCATTAAATAATCT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TCTTCATGATCGGCAGAGCTGGTTTGTTCGAT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TCAATATACATACAGAAATAGTCCTCGTAAA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GAAAACGTTCTACAGTTTATTGAGTCTGTTAA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GGGTTAGATTATATAATCAGACATTGGGTTTAG
TTTCTAAGCTACCTGTGCGGCAGTGAAC	ATTTACGCTGAGATTCTGCGGCGGCGCGGTAA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GTGCTGTTTGTTGATGTCCTGCTCGACGAGGC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	AATGCGTTGATGTAAGCCTCTTTCACCGTGGCG
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TTTTAGGGTCGTGTCTATCAGCCCCTTGATAC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	ACCTTATTTAATTGGAATGGGTGGGGCTTCAT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TTTGACCTTGATAGCTCGATAGGCAATCAAGA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GAGCAATTTACATTAGAGCTAAAAGATATTGC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	CCTTGCACACTACTAGCGTGATTAGCTAGCAC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	ATCGGAACCCCTCGATGTTACTATCCGACATA
TTTCTAAGCTACCTGTGCGGCAGTGAAC

>NC_010465|3|3|2756336-2758104|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAT	ATCCAGTGTCACTGCTGGGAAGGTTTCAAGTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTTTTAATTTTCCGTCAGTCTCACCTTTAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTCAATTCGATTAGTGTTAAGGAACTTGCAG
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTATCTGTGATTGATTTATATGATGTTAAAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAT	ATGGTTTCACCTGTATCTGGTAATAATCCCTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACCCTCTCCCTTGATTCGAATACCGGCAGTGC
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TTGGAGTTAATAAGTTTGATATGTATACGATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTGTTTTTCCATTAATATCGACAACTTTTTT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCATCTATTTGATAAATTCCAGATTCATTTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	AAACATCAGCGGTCCCGCTGGATGAATATGGT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ATTAAGTAAGCGTGATGTGTACGGCGGATTCT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	TGTCATGGACGCAGCGAAGGCGGAGCAAGCAT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	CCGTTACGCCGACTACTGGAACTGTTGCAGAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	ACTGGTTTGGTTCTTGCTCGGTCGGCTGAATT
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GATATTTCATTTGGTTGTTTATCTAGCTTGTC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GATTCATATTTCCGACACTCATTAAATAATCT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TCTTCATGATCGGCAGAGCTGGTTTGTTCGAT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TCAATATACATACAGAAATAGTCCTCGTAAA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GAAAACGTTCTACAGTTTATTGAGTCTGTTAA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GGGTTAGATTATATAATCAGACATTGGGTTTAG
TTTCTAAGCTACCTGTGCGGCAGTGAAC	ATTTACGCTGAGATTCTGCGGCGGCGCGGTAA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GTGCTGTTTGTTGATGTCCTGCTCGACGAGGC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	AATGCGTTGATGTAAGCCTCTTTCACCGTGGCG
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TTTTAGGGTCGTGTCTATCAGCCCCTTGATAC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	ACCTTATTTAATTGGAATGGGTGGGGCTTCAT
TTTCTAAGCTACCTGTGCGGCAGTGAAC	TTTGACCTTGATAGCTCGATAGGCAATCAAGA
TTTCTAAGCTACCTGTGCGGCAGTGAAC	GAGCAATTTACATTAGAGCTAAAAGATATTGC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	CCTTGCACACTACTAGCGTGATTAGCTAGCAC
TTTCTAAGCTACCTGTGCGGCAGTGAAC	ATCGGAACCCCTCGATGTTACTATCCGACATA
TTTCTAAGCTACCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010465.1\|WP_002211896.1\|2766761_2767661_+\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NC_010465.1\|WP_002216312.1\|2760448_2761540_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NC_010465.1\|WP_002211895.1\|2767664_2768996_+\|histidinol-dehydrogenase	unknown	unknown	gnl\|CDD\|234853
NC_010465.1\|WP_080513682.1\|2746942_2748343_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NC_010465.1\|WP_011192125.1\|2761825_2763382_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_010465.1\|WP_012105307.1\|2744415_2745258_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NC_010465.1\|WP_012304245.1\|2768998_2770147_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|234972
NC_010465.1\|WP_072080740.1\|2746508_2746934_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NC_010465.1\|WP_012304242.1\|2758598_2759990_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
NC_010465.1\|WP_002211898.1\|2765220_2766048_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187576
NC_010465.1\|WP_002211918.1\|2742854_2742995_-\|hypothetical-protein	unknown	unknown	unknown
NC_010465.1\|WP_002231208.1\|2766423_2766471_+\|his-operon-leader-peptide	unknown	unknown	unknown
NC_010465.1\|WP_002216313.1\|2759979_2760195_-\|hypothetical-protein	unknown	unknown	unknown
NC_010465.1\|WP_011192128.1\|2753408_2754548_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187547
NC_010465.1\|WP_002211900.1\|2763378_2764374_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NC_010465.1\|WP_012304240.1\|2749286_2752514_+\|inverse-autotransporter-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|378762
NC_010465.1\|WP_002216393.1\|2745305_2746046_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187626
NC_010465.1\|WP_011192127.1\|2754810_2756241_+\|exodeoxyribonuclease-I	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236979
NC_010465.1\|WP_002217522.1\|2752657_2752975_-\|DUF496-family-protein	unknown	unknown	gnl\|CDD\|180070
NC_010465.1\|WP_002211917.1\|2743106_2744384_-\|L-fuconate-dehydratase	unknown	unknown	gnl\|CDD\|239440

Protein	Function_ID	Function_description	E-value
NC_010465.1\|WP_002211896.1\|2766761_2767661_+\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	6.63843e-161
NC_010465.1\|WP_002211900.1\|2763378_2764374_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.22935e-72
NC_010465.1\|WP_012304242.1\|2758598_2759990_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	6.30858e-46
NC_010465.1\|WP_011192125.1\|2761825_2763382_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NC_010465.1\|WP_012105307.1\|2744415_2745258_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	2.02348e-106
NC_010465.1\|WP_072080740.1\|2746508_2746934_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	7.93355e-56
NC_010465.1\|WP_002216312.1\|2760448_2761540_-\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NC_010465.1\|WP_002211898.1\|2765220_2766048_-\|SDR-family-oxidoreductase	gnl\|CDD\|187576	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4. Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.54107e-68
NC_010465.1\|WP_002211895.1\|2767664_2768996_+\|histidinol-dehydrogenase	gnl\|CDD\|234853	PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed.	0
NC_010465.1\|WP_080513682.1\|2746942_2748343_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.52865e-75
NC_010465.1\|WP_011192128.1\|2753408_2754548_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187547	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs. SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.59731e-61
NC_010465.1\|WP_012304245.1\|2768998_2770147_+\|histidinol-phosphate-transaminase	gnl\|CDD\|234972	PRK01688, PRK01688, histidinol-phosphate aminotransferase; Provisional.	0
NC_010465.1\|WP_012304240.1\|2749286_2752514_+\|inverse-autotransporter-beta-barrel-domain-containing-protein	gnl\|CDD\|378762	pfam11924, IAT_beta, Inverse autotransporter, beta-domain. This is a family of beta-barrel porin-like outer membrane proteins from enteropathogenic Gram-negative bacteria. Intimins and invasins are virulence factors produced by pathogenic Gram-negative bacteria. They carry C-terminal extracellular passenger domains that are involved in adhesion to host cells and N-terminal beta domains that are embedded in the outer membrane. This family represents the beta-barrel porin-like domain in the outer membrane that can be found in intimins, invasins and some inverse autotransporters.	1.83009e-126
NC_010465.1\|WP_002216393.1\|2745305_2746046_-\|SDR-family-oxidoreductase	gnl\|CDD\|187626	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs. Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).	1.05065e-117
NC_010465.1\|WP_011192127.1\|2754810_2756241_+\|exodeoxyribonuclease-I	gnl\|CDD\|236979	PRK11779, sbcB, exonuclease I; Provisional.	0
NC_010465.1\|WP_002217522.1\|2752657_2752975_-\|DUF496-family-protein	gnl\|CDD\|180070	PRK05423, PRK05423, DUF496 family protein.	5.26004e-59
NC_010465.1\|WP_002211917.1\|2743106_2744384_-\|L-fuconate-dehydratase	gnl\|CDD\|239440	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	0

>NC_010465.1|WP_011192127.1|2754810_2756241_+|exodeoxyribonuclease-I
MSDKNKQPTFYVHDYETFGQRPALDRPAQFAGVRTDLDFNLVEEPLVIYCKPADDYLPQPEAVMITGITPQHALANGVNEAEFSRQIHQAFSVPGTCILGYNNIRFDDEVSRNIFYRNFYDPYAYSWQGGNSRWDLLDVMRACYALRPEGIVWPENDDGLPSFKLEHLTKANGVEHLQAHDAMSDVYATIAMAKLVKQAQPRLFDYLYQHRSKHKINALIDIAEMTPLVHVSGMFGAARGNTSWVAPLAWHPENKNAVIMCDLAGDMSPLLELDSDTLRERLYTRRDKLQAQESAIPIKLVHINKCPVLAPAKTLLPENADRLGIDRQRCLQNLQLLRQNPQVREKVVALFAQAEPFAVTDDVDTQLYNGFFSDADRATMKIIQQTEPQNLPALDLTFQDPRLEALLFRFRARNYPNTLNNSEQQRWLQHRREALSPERVQDYVLQLEQFYNQYEDDKEKLALLKALFEYAKGLVS
>NC_010465.1|WP_011192128.1|2753408_2754548_-|NAD-dependent-epimerase/dehydratase-family-protein
MTKNKTGSETLKKLLLTGATGFLGGAVLEKLLLASSDFNYLLLVRANTPEQGLMRIRENLEKFYLPNELINKININHVLLGDLAEPDSFINDVRIDDVTHVINCAAIASFGNNPLIWKVNVEGTLAFGKRMAQVAGLQRFVHVGTAMACTPEADTVVDERVLSTENDAHLVEYTKSKSAIECLLAEHCPTLPLVFARPSIVVGHTRLGCQPSSSIFWVFRMALMLRKFMCSLDDHIDVIPVDYCADALLYILEYPNLPDNIYHISAGEKGSVSFSEIDQAMSVAAKQKPVGVNYSQVEYTALVQMRNQLKGIFGPCNERLMLKAMRLYGSFAMLNVRFSNERLLSLGMPRTPRFTDYIARCVESSHGMTIQQQMAVDFK
>NC_010465.1|WP_002217522.1|2752657_2752975_-|DUF496-family-protein
MDNASKPTFQDVLEFVRMFRRKNKLQREIVDNEKKIRDNQKRVLLLDNLSEYIKPGMSIEEVQAIIANMRGDYEDRVDDYIIKNADLSKERRELSKKLKAMGEVK
>NC_010465.1|WP_012304240.1|2749286_2752514_+|inverse-autotransporter-beta-barrel-domain-containing-protein
MSLYRISSLHQAKQLNKNKQLNKTRISKSVVWANIVIQAIFPLSIAFTPAVMAAETVGASDEKPRSASQAEQSTANAATRLASILTNDDSAKQASSIARGTAANAGNEALQKWFNQFGSAKVQLNLDEKLSLKGSQLDVLLPLTDSPDLLTFTQLGGRYIDDRVTLNVGLGQRHFFAQQMLGYNLFVDHDASYSHTRIGVGAEYGRDFINLAANGYFGVSGWKNSPDLDKYDEKVANGFDLRSEAYLPTLPQLGGKLIYEQYFGDEVGLFGVDNRQKNPLAVTLGVNYTPIPLFTVGVDHKMGRAGMNDTRFNLGFNYAFGTPLAHQLDSDAVAIKRSLMGSRYNLVDRNNQIVMKYRKQNRVTLELPARVSGAARQTMPLVANATAQQGIDRIEWEASALTLAGGKITGSGNNWQITLPSYLSGGEGNNTYRISAIAYDTLGNASPVAYSDLVVDSHGVNTNASGLTAAPEILPANASASSVIEFNIKDNANQPITGIADELAFSLELVELPEELAKAKARSVPLKTVSHTLTKITESAPGIYQATLTSGSKPQLINITAQINGVPLADVQTKVTLIADENTATLQTSSLQIITNGSLADDTDANQIRAVVVDAYGNKLSGVQVNFTVGNNAKITETTLSDKQGGVTAAITSTKAGTYTVTAELNGVTQQIDVNFIPDAGTATLDDSDEYKLQWVTNGQVADGESTNSVQLTVVDKFGNTVPGVDVAFTTDIGAIISEVTPTDANGVATAKIISSQAKSHTVKATLNRKEQTVEVNFIADTATAEITANNFTVEVDGQVAGSGTNQVQALVVDKKGNPVANMTVNFTATNGVVAETTSAKTDENGKVTTNLSMTNVGGTISTVTATMINSANVTSTQDKPVIFYPDFTKATLNTPANTYSGFNINSGFPTTGFKNTHFQLSPHGITGANSDYDWVSSHPNVSVSNTGAITLQDNPGGKVTITATWKHDSSKVFTYDFTLNYWVGLYSSTNLSWAQANASCINAGMRLPTNSEVSAGQDVRGVGSLFGEWGNLNAYPSFPTAQIIWTSVDTNDFHIDTGLTHSASNVTLAYMCIK
>NC_010465.1|WP_080513682.1|2746942_2748343_-|MFS-transporter
MTQISFFNALISLTFSPSRRHPLVMSLTRRSNMSNFNHYPDPTLNSAIKKAWYRLMPLMFIMYFVAFIDRINVGFAKDAMSADIGLSQSAFALGAGIFFAAYALFGIPANLMMNKLGAKVWLSSTTVVWGGLSAGTGLVSNEYQFVILRFLLGVAEAGFYPGILLLASIYFPNKIRASVIGIFVLGVPAALTLGSPISGALLDMQGFLGQPGWFWMFLLEGLPAVGLGIFAFFYLDDSPATARYLNPEEKQALLTQLSIEQSDTESSSVKAVLLSPKVWHLALIYGTIQVGVYGLIFFLPSQVATLLGSTLGFKESLVAAIPWAFSALGVYYIPRYADRKTHRRNPIATLNLVVAAIGLIISAYASPVLAIAALCLCAIGFLAVQPIFWTFPAQILSGKALAAGIGFCTTMGAFFSFLAPIIRVEAESQFNSPPAGLITLALFSLLSATLIFSLKFWPAKATAEVI
>NC_010465.1|WP_072080740.1|2746508_2746934_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MVSAPLPYIKPGERVIIYDGVCALCTGWVNFLIRHDRRHTVRLSAVQSKKGRALLEWAGLPTDKINTLVLIENQQVYLRSEAIFCVIANLPWPWRILGVLRIFPRPLRDRCYDGIALNRYRLFGRYDAVRKLKADHERRFL
>NC_010465.1|WP_002216393.1|2745305_2746046_-|SDR-family-oxidoreductase
MNLKGKKALVTAAGQGIGFNTATLFARKGAEVIASDINIAALSNIPGITAVSLDVTDTLAINDVAQAIGPIDVLFNCAGVVHSGDILTCSEQEWQFALDLNVTAMFHMIRAFLPGMIACQQGSIINMSSVASSIKGVPNRFAYSTSKAAVIGLTRSVAADYVTQGIRCNAICPGTVESPSLRQRIAVQAHAEGRSEADVFQAFAARQPIGRIGKAEEIAQLALYLASDASAYTTGTIHIIDGGWSN
>NC_010465.1|WP_012105307.1|2744415_2745258_-|fumarylacetoacetate-hydrolase-family-protein
MKLLRYGPVGEERPALLDELGEIRDLSAHIEDISGKFLLPATLYKLRQLDSASLPLVRGEQRLGACVGHVGKFICIGLNYADHAAETGAEIPQEPVIFNKWTSAIIGPNDDIEIPRNSVKTDWEVELGVVIGTGGRYIGEANAMSHVAGYCVVNDISEREFQLEHGGTWDKGKGCDTFGPIGPWLVTRDEIPDPHQLGLWLDVDGRRYQNGSTRTMIFKIPQIISYLSRFMSLQSGDVISTGTPPGVGLGQKPPVYLHAGQIMRLGIEGLGEQCQKTIQA
>NC_010465.1|WP_002211917.1|2743106_2744384_-|L-fuconate-dehydratase
MTIITALRTEDVRFPTSLELDGSDAMNPDPDYSAAYVILDTDNPALSGHGLTFTIGRGNEICCVAIHALEHLIVGRDLASMTANMGKFWREFTSDSQLRWIGPEKGAIHLATGAVINAVWDLWSKAEGKPLWRLVADMSPEELVRCIDFRYITDCITPEEALTLLQQRAHNKALRLEKLQDEGYPCYTTSAGWLGYPDDKLRRLCQDAVDAGFDYLKLKVGRDLEDDIRRVRITREVLGPDRKLMIDANQIWETNEAIPWVNQLAFANPWFIEEPTNPDDIEGHRRIRQGVAPVKVATGEMCQNRIMFKQFIMREAIDVVQIDACRLGGVNEVLAVMLMAAKYDLPVCPHAGGVGLCEYVQHLAMIDYLCIAGTDKGRVIEYVDHLHEHFVHPCVIKNAAYMPPEQPGFSIEMHQSSIEKYRFRV
>NC_010465.1|WP_002211918.1|2742854_2742995_-|hypothetical-protein
MISVIIMISEIVMRSEIVMISEIDNQVRPVSDWGERKPPTHQQLEI
>NC_010465.1|WP_012304242.1|2758598_2759990_-|APC-family-permease
MAHDATVAVGTNQTGTNNRVQLRKTLTLVQVVMMGLAYLQPMTIFDTFGIVSGLTDGHVATSYAIALIAVLFTAVSYGKLVKRFPSAGSAYTYAQKSISPNVGFMVGWSSLLDYLFMPMINILLAKIYLEAIFPGVPSWIFVGALVSLMTLFNLRGINIVANLNSVIVVVQVAIMVVFMGLLIHGVYQGEGAGTLVSARPFYSENAHLVPMITGATILCFSFLGFDGISSLSEETPNAGKVIPKAIFLTALIGGIIFIAVSYCLQLYFPNISRFTDPEASQPEIMLFVAGKFFQSVILCFSCVTVLASGMAAHAGVSRLLYVMGRDGVFPEKVFGYVHPKWRTPAINVLLVGGVALSAISFDLVTATALINFGALVAFTFVNLSVIAQFYVRERRNRTFKDHFNYLILPMIGAGTVGVLWVNLESSSMTLGLVWGAIGLSYMVWKTRAFRRALPQFTEEPAQL
>NC_010465.1|WP_002216313.1|2759979_2760195_-|hypothetical-protein
MGQLFILAPVPTGMRCTCSDYGAAGMANTRYTALISPLTYPRQIRSFPVTFNRCETFANRVEGMGRLNHGA
>NC_010465.1|WP_002216312.1|2760448_2761540_-|oxidoreductase
MSANAIRVQVGPANYFSFPGAIDKLSEFYPQAALDKALWIYGERALAAAQDYLPKAFHGPQAVRAKFSTHCSQSTVADLVSAAGGDRQVVIGIGGGAVLDTAKVVARQLGVPLVAIPTIAATCAAWTPLSVWYNEAGQALNFEIFNDANHLVLVEPRIMLHAPVEYLLAGIGDTLAKWYEAVVLSPQPETLSLTVRLGLQAALEIRNVLLKQSEAALQAVAQGELTQDFLDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTLLPQTEHFLHGTKVAYGILVQTALLGQDEVLRSLIVAFNQLGLPTHLAALDVDINDREAIDRVIGRILKPGESIHYLPIALNSEKVWAAIEQVEIAAQH
>NC_010465.1|WP_011192125.1|2761825_2763382_+|sugar-ABC-transporter-ATP-binding-protein
MSSIPPSRLEMRNISISFSGFHALQEVDFTLEGGSTHALIGANGAGKSTLMAILSGAHNHYRGEIFIDGQPIDIHSPRQARQHGIHVVQQEVDVALIPTLSVAENIMLDELADRGHLFNWPQLYRQAEALLEQLELKLNVRQRLESCTLAEKQQVLLARALSHQCRFLILDEPTAPLDQEESARLFRVVRRLQSEGIGIVFISHRIHELREVCDQLTVLRDGRRVSHDTMEGMSGEQIVEKMLGHTLEDIFPPRRAAVSSKTLLSKTRLSKTLLPKTLLSVSGLHDQYKLRDISLTLHQGEILGIAGLAGAGKTELCKALFGDTPSTLERGELSGKAWRPRSPDRSVAQGLALVPEERRKEGIFIDEGIPMNLSVAADDSFSRWSLFSRRQELSWAKELIERLGIRTSSPQQKLARLSGGNQQKVAIGKWLRGDAQVLIFDEPTKGVDIKAKQDLFSLIDQLAQQGKGIIYASGEFSELVGLCDRICVLWDGRIVAELNAAEVDEETLLLFSTGGTPQ
>NC_010465.1|WP_002211900.1|2763378_2764374_+|ABC-transporter-permease
MSKELPLPDVQPWRHQLFDFLYKWGMLLTVVALIALFGLASDNFLDPNNIINILRSIAIVTVIAIGVSISLSIGGFDLSVGSTASLANAVVVSLFVWYGFGTTGAIILTLLICTLVGLFNAFLIVVLKIPDMLATLASLFVIQGVAMTYSRGGSITQSMLLPSGDMAEGVIPEIFSALGQVPVIVLIMLAVTVVVQLYLSLTKHGRRMYAIGGNPQAARLAGIRTVRYRVLAYVLSAQLAALGGILLASRIGSSQVNAGSGYLMDAVAAAYIGFSLAGSGKPNAFGTLIGAIILGVLQNGLVMLSVPYYAMDIIKGLVLAMALALTYIQKR
>NC_010465.1|WP_002211898.1|2765220_2766048_-|SDR-family-oxidoreductase
MKKVAIIGLGWLGMPLAQSLSRRGIDVVGSKTTPDGVDAARMSGINCYPLVLTPELICEPDDLAQLMAVDALVITLPASRTTAGGDHYFQAVQQVVDSALAFGVPRIIFTSSTSVYGETRGRIKESSPLQPVTVAGKTLMALEQWLHQLPHTSVDILRLAGLVGTDRHPGRFLAGKTGVKGGSQGVNLVHQEDVIAAIELLLNRPKGGHLYNLCAPIHPRKRDFYPACARALQLTPPEFAVEEQEGANREIDGSKICSELGFEYLYPDPSRMPLN
>NC_010465.1|WP_002231208.1|2766423_2766471_+|his-operon-leader-peptide
MNRVQFNHHHHHHPD
>NC_010465.1|WP_002211896.1|2766761_2767661_+|ATP-phosphoribosyltransferase
MLDKTRLRIAMQKSGRLSDESQELLSRCGIKINLQQQRLIAFAENMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGDDPRYFTLRRLDFGGCRLSLAAPLDAEYTGPQCLQDTRIATSYPHILKQYLDKQGVRFKSCLLNGSVEVAPRAGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMSVDKQQLIDRLMTRIQGVIQARESKYIMMHAPSERLDEIITLLPGAERPTILPLAGDKSRVAMHMVSSETLFWETMEKLKALGASSILVLPIEKMME
>NC_010465.1|WP_002211895.1|2767664_2768996_+|histidinol-dehydrogenase
MQPTNFNTLINWQQCSEEQQKALLSRPAINASERITAAVSDILDRVKAEGDSALRDFSQRFDHVQVADIRITASEIAAASARLSDDVKHAMAQAVRNIEIFHNAQKMPVVDVETQPGVRCQQITRPIASVGLYIPGGSAPLPSTVLMLGTPARIAGCQRVVLCSPPPIADEILYAAQLCGIQEVFQIGGAQAIAAMAFGSESVPKVHKIFGPGNAYVTEAKRQVSQRLDGAAIDMPAGPSEVLVIADSGATPAFIAADLLSQAEHGPDSQVILLTPDAAIAQAVAVEVEQQLALLSRADIARQALESSRLIVTNDLQQCIDISNAYGPEHLILQIRQPEEIIDQIDNAGSVFMGDWSPESAGDYASGTNHVLPTYGYTSTYSSLGLADFVKRMTVQQLTPQGLLGLASTIETLAQAEQLTAHKNAVTLRVTALNNALTAVNKE
>NC_010465.1|WP_012304245.1|2768998_2770147_+|histidinol-phosphate-transaminase
MSQSNNVTDLARANIRALTPYMSARRLGGNGDVWLNANEYPLGTEYQLTTQTFNRYPECQPKHVIERYAAYAGLPPEQVLVSRGADEGIELLIRAFCEPGQDAILFCPPTYGMYAVSAETFGVERRTVPAQADWQLDLPAIANNLEQVKVIYVCSPNNPTGNLINPADLQAVLALAQGRAIVAIDEAYIEFCPQASVSNWLKDYPNLVILRTLSKAFALAGLRCGFTLANSDIIQLLLKVIAPYPLSTPVADIAAQALSPKGIEQMRQRVSEVRANRAWLQSALQDCACVEQVFTSESNYLLVRFTASSSVFKVLWDQGIILRDQNKQPGLANCLRITIGTRQECERVIAALAPLAGIDNSNNIDNQSKTHSQTSSIRKGTI

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Crispr_ID: NC_010465_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010465_4

3354024-3354107

Orphan

I-F

Consensus_repeat	Method
TAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010465_4

>merge|NC_010465|4|3354024-3354107|CRISPRCasFinder
TAAGCTGCCTGTACGGCAGTGAACGCATTGCCGTTGAAGAGATCCGTCGTTGGCTTTTTCTAAGCTGCCTGTGCGGCAGTGAAC

>NC_010465|4|4|3354024-3354107|CRISPRCasFinder
TAAGCTGCCTGTACGGCAGTGAAC	GCATTGCCGTTGAAGAGATCCGTCGTTGGCTTTTTC
TAAGCTGCCTGTGCGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010465.1\|WP_012105531.1\|3343207_3344341_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_010465.1\|WP_012304403.1\|3351277_3352804_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NC_010465.1\|WP_002224869.1\|3370015_3370138_+\|hypothetical-protein	unknown	unknown	unknown
NC_010465.1\|WP_012304412.1\|3366636_3366888_-\|hypothetical-protein	unknown	unknown	unknown
NC_010465.1\|WP_012304409.1\|3364144_3364987_+\|hypothetical-protein	unknown	unknown	unknown
NC_010465.1\|WP_002209745.1\|3363226_3363472_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|372675
NC_010465.1\|WP_011191915.1\|3366133_3366613_-\|Hcp-family-type-VI-secretion-system-effector	unknown	unknown	gnl\|CDD\|213799
NC_010465.1\|WP_012304399.1\|3345404_3346952_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NC_010465.1\|WP_032467032.1\|3364994_3365396_+\|DUF1240-domain-containing-protein	unknown	unknown	gnl\|CDD\|336520
NC_010465.1\|WP_012304401.1\|3348037_3349024_-\|inositol-2-dehydrogenase	unknown	unknown	gnl\|CDD\|275173
NC_010465.1\|WP_012304400.1\|3347000_3347930_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380623
NC_010465.1\|WP_012304413.1\|3366926_3367166_-\|hypothetical-protein	unknown	unknown	unknown
NC_010465.1\|WP_012304402.1\|3349317_3351264_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|226471
NC_010465.1\|WP_002210302.1\|3344364_3345393_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NC_010465.1\|WP_012304405.1\|3353161_3354016_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NC_010465.1\|WP_002227877.1\|3340061_3340982_-\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NC_010465.1\|WP_080513693.1\|3354579_3360594_+\|alpha-2-macroglobulin	unknown	unknown	gnl\|CDD\|225248
NC_010465.1\|WP_012304398.1\|3341188_3343159_-\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281
NC_010465.1\|WP_012105540.1\|3367975_3369892_+\|autotransporter-adhesin-YapC	unknown	unknown	gnl\|CDD\|273608
NC_010465.1\|WP_138921619.1\|3360701_3363014_+\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|273954

Protein	Function_ID	Function_description	E-value
NC_010465.1\|WP_012105531.1\|3343207_3344341_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.53135e-70
NC_010465.1\|WP_012304403.1\|3351277_3352804_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NC_010465.1\|WP_002209745.1\|3363226_3363472_-\|transcriptional-regulator	gnl\|CDD\|372675	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding.	5.27401e-36
NC_010465.1\|WP_011191915.1\|3366133_3366613_-\|Hcp-family-type-VI-secretion-system-effector	gnl\|CDD\|213799	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family. This family includes Hcp1 (hemolysin coregulated protein 1), an exported, homohexameric ring-forming virulence protein from Pseudomonas aeruginosa. Hcp1 lacks a conventional signal sequence and is instead exported by means of the type VI secretion system, encoded by a pathogenicity cluster of a class previously designated IAHP (IcmF-associated homologous protein). Homologs of Hcp1, in this protein family, are found in various bacteria of which most but not all are known pathogens. Pathogens may have many multiple members of this family, with three to ten in Erwinia carotovora, Yersinia pestis, uropathogenic Escherichia coli, and the insect pathogen Photorhabdus luminescens. [Cellular processes, Pathogenesis].	6.03614e-76
NC_010465.1\|WP_012304399.1\|3345404_3346952_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NC_010465.1\|WP_032467032.1\|3364994_3365396_+\|DUF1240-domain-containing-protein	gnl\|CDD\|336520	pfam06836, DUF1240, Protein of unknown function (DUF1240). This family consists of a number of hypothetical putative membrane proteins which seem to be specific to Yersinia pestis. The function of this family is unknown.	4.36414e-40
NC_010465.1\|WP_012304401.1\|3348037_3349024_-\|inositol-2-dehydrogenase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	5.85199e-171
NC_010465.1\|WP_012304400.1\|3347000_3347930_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380623	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins. The periplasmic binding protein (PBP) IbpA mediates the uptake of myo-inositol by an ABC transporter that consists of the PBP IbpA, the transmembrane permease IatP, and the ABC IatA. IbpA shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge.	6.69217e-119
NC_010465.1\|WP_012304402.1\|3349317_3351264_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|226471	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism].	0
NC_010465.1\|WP_002210302.1\|3344364_3345393_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	8.15893e-97
NC_010465.1\|WP_012304405.1\|3353161_3354016_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.12958e-69
NC_010465.1\|WP_002227877.1\|3340061_3340982_-\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	8.43662e-165
NC_010465.1\|WP_080513693.1\|3354579_3360594_+\|alpha-2-macroglobulin	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NC_010465.1\|WP_012304398.1\|3341188_3343159_-\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0
NC_010465.1\|WP_012105540.1\|3367975_3369892_+\|autotransporter-adhesin-YapC	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.11064e-104
NC_010465.1\|WP_138921619.1\|3360701_3363014_+\|penicillin-binding-protein-1C	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0

>NC_010465.1|WP_012304405.1|3353161_3354016_+|MurR/RpiR-family-transcriptional-regulator
MTTASNLSELQQQIRDRYDNLSKRLQQVSRYVLDNTNSVAFDTVAVIAERADVPPSTLIRFANAFDFSGFNEMKQLFRMNLVEETASYTDRARLFRAMESEAVPETPLGILQEFARSNAQALQQLAARTEPEMLQRAVELLAQADTIYVVGLRRSFSVAAYLTYALSHLECRPVQLHGLGGMLREQVNSIKARDIVVSISFSPYAEETVMVSEIAASAGARQIVITDSQISPLATFSDLCFVVKEAQVDAFRSQSATLCLVQSLVVALAYQQEDQAGAALAHRQ
>NC_010465.1|WP_012304403.1|3351277_3352804_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
METVANFINGKCVFSCGNSITSGSPRAQTIFNSATGEPIRQVMMSTAQETEQAITAAQQAFASWSRQAPLKRARVMFRFKSLLEQHLDALAQLISEEHGKVYSDAVGELTRGLEVVEFACGIPHLQKGEHSANVGTGVDNHSLMQPLGVCVGITPFNFPAMVPMWMFPIALATGNTFVLKPSEKDPSLAVRLAQLLTDAGLPDGVFNVVQGDKTAVDVLLTDPRVQAVSFVGSTPIAEYIYQTASAHGKRCQALGGAKNHCILMPDADMDMAASAIMGAAYGAAGERCMALSVVLAVGDETADNLCARLEQQISTLRVGPGLAQEPENDMGPLISAPHRAKVLGYIDSGVAQKATLRIDGRGLKVAGHEQGYFVGPTLFDHVTPAMTIYQEEIFGPVLSVVRIADYRSAVDLINRHEYGNGTAIFTRDGGTARRFCEEVQVGMVGVNVPIPVPVAFHSFGGWKRSIFGPLNVHGNDGVRFYTRMKTITARWPEAQHDQGAAFSMPTLG
>NC_010465.1|WP_012304402.1|3349317_3351264_-|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MSTVNMAMKTVRMTMAQALVRFLNQQYVAIDGQEVAFVHGVMTIFGHGNVLGIGQALEENPGHLQVHQGCNEQGMAHMAIGFAKQYRRQRIYAVSSSIGPGAANMVTAAATATANRIPLLLLPGDIYASRQPDPVLQQIEQYHDLSISTNDCFRPVSRYWDRINRPEQLMSAMLSAMRVLTDPADTGAVTLCLPQDVQGEAWDYPASFFERRVHRIERRPPDTRRLSDALSLIARKRRPLVVCGGGVRYSGAHEAFRAFVENAQLPFTETQAGKGALPSDHPLNLGGIGVTGGLAANRLAPQADLVIGIGTRLTDFTTGSKALFSHPEVAFLLLNVAEFDALKLDATALIADARVGLEALTEGLTGYRTAWQGDIIEAKAAWRDECQRLWSRTWRPDEVPEVAGHLDDSLQEYAEVLNTTLTQTRVLGLINQHIEDDAIVVGAAGSLPGDLQRLWQVKTADTYHLEYGYSCMGYEIAAAIGAKIAMPHQPVYAMVGDGSYMMLHSELHTAVQEGLKITVLLFDNAGFGCINNLQMGHGMSSFCTESRHRNHESGQLNGPLIRVDFAQNAESYGCRAWRVHDEPSLLAALAASRDHPGPVLLDIKVLPKSMTHDYASWWRTGDAQIARSPAVQQAAERTQMKVKRARQY
>NC_010465.1|WP_012304401.1|3348037_3349024_-|inositol-2-dehydrogenase
MFNIALLGAGRIGQVHAANIAAHPETTLWSVVDPNQENAARLVSQYRTRQQSVNEAMADLNVHAVLIASATDTHADLIELAAKHGKTIFCEKPVHLDLARVRDCLKVVKEYGVPLFIGFNRRFDPQFRHLKNEVLAGRIGKPESLLIISRDPSPPPVEYVRVSGGMFRDMTIHDFDMARFIMGEEPVAVFAQGSNLVDPAIGAAGDIDTAFVVLKYASGAMATIVNSRRSAYGYDQRLELHGSQGLLCVGNILENQVQHFGQKGGTRALPEHFFLQRYQAAYAAEWEHFVAILRGDVQPECGGEEGERALYLADKALESLHSQREISL
>NC_010465.1|WP_012304400.1|3347000_3347930_-|sugar-ABC-transporter-substrate-binding-protein
MKKLILAALIVFTSGVAFAENEQIVFSTPNLAMPFEVHMQRTAVKTAKALGVKLQVLDGQGSSPKQVADLENAITRGAQGFIVSPNDINAISSAVEEIQQAKLPVVTLDRSVESEKKVPHFGANNYKGGEAIANYVKSMFPNGAEIVLLTGQPGSSSNIERTKGIRDSLKTGGDKYRIVVDQTGNWMRSEGMRIIESVLPSLPKPPQVILSANDDMALGAIEALQSHGMKPGEIMVTGFDAVPEALARVREGWMAVTADQRPGYAVTIAMNQLVANIRDQKAITGADFLPTMITKENLDQAERVSEAGK
>NC_010465.1|WP_012304399.1|3345404_3346952_-|sugar-ABC-transporter-ATP-binding-protein
MSQPLLKITDMAKSFSGVWALSNVQLTVEQGEIHALLGENGAGKSTLLKALSGAQPQTHGEIWFNGEMLALDDSPVERQNKGIITIYQEVNLLPNMTVAENMFLGREPRRRQVFVDEKAVNQEAQAILDYLQLNVSPTTAVARLSIAQQQMVEIARALTLNAKLIVMDEPSAALSDSEVESLHRVVRELKGRGVSIIYVTHRLHEVFQLCDRFTVFQDGRYTGSDEVAGTNVEKIIRLMVGRDVVFNRRPASETHHQDQPIRLSVQGLCREKPPLDPHGVALKDISFHVHAGEVLGIAGLVGAGRTEVARCLFGAGAFTSGNFEIDGMPYQPRDPMFALEQGIALVPEDRKKEGAVQGLSIRDNLTLSSLAGLLQWRFFVNTRKEDQLIETYRLALQIKMVNSEQAVRKLSGGNQQKVILARCMALNPRILIVDEPTRGIDVGTKSEVHQVLFDMAKQGVAVIVISSDLPEVLAVSDRIITLSEGRVTGEIHGDDASEERLMTMMAINHNALNAA
>NC_010465.1|WP_002210302.1|3344364_3345393_-|ABC-transporter-permease
MLQPLSKPQASVKSAMRFDPITFFERFGVLIFMFLLLIFFQLQNSNFLSERNIFNILTEVSIYGIMAVGMTFVILTAGIDLSVGSILAVSAMTAAYVIKGDNFTTIDPNAWGGMSWLIGLSICLAMGTLIGFLQGLGVTRLRLPPFIVTLGGMTIWRGLTLVINDGAPIAGFDAGYRWWGRGDLLGISIPIWIFAIVAIAGYLALHKTRWGRFVYAIGGNPEAARLAGVNVKRVLVSVYVVIGCLAGLAGFILSARLGSAEAVAGISFELRVIASVVIGGTSLMGGYGRIGGTIIGSIIMGILINGLVLMNVSAYYQQIITGLIIVLAVAFDTYAKNRRGAL
>NC_010465.1|WP_012105531.1|3343207_3344341_-|Gfo/Idh/MocA-family-oxidoreductase
MKEVRIGLIGTGYIGKAHAIAYAQAPTVFELRGKLVREMVAEVSPALAAQRAQAFGFNRFTCDWRELVADPAIDVVDICSPNYLHKEMALAAIHHGKHVYAEKPLALNARDASEMAAAATRAGVKTLVGFNYIKNPSAKLAKEIIERGEIGEVIHFYGTHNEDYMADPNTPIHWHCLQATAGLGALGDLAAHIVSMAQYLVGEITQVCGDLKTVVVTRPASVGSSARVAVENEDQAHAMVRFVNGAQGVIEASRVACGRKMGLSYMITGTQGAISFTQERMAELKLYLHNDPVNRQGFRTLLVGPAHPEYAAFCMAAGHGIGFNDQKTVEVRDLIDGIAMDTPLWPDFAEGWKVSRILDAIALSHQDSRWVNVTDIV
>NC_010465.1|WP_012304398.1|3341188_3343159_-|5-dehydro-2-deoxygluconokinase
MSVEKQFSVSAEKTCNTENKCNTEKKFDVICMGRIAVDLYGQQIGARLEDVASFAKYLGGSSGNVAYGSARQGLRSSMLARVGDEHMGRFLREELHQVGCDTSHLTTDKKRLTALVLLSIKDRDTFPLIFYRDNCADMAITAQDFSEQYIASARCLAITGTHLSHPNTREAVLTALRYARRNGVRTVLDIDYRPVLWGLTSLGDGETRFIESHQVTAELLAVFNLFDVIVGTEEEFHIAGGSTNTLDALRGVREVSDATLVCKRGALGCSVYTEAIPQTLDEGLTVSGVRVKVLNVLGAGDAFMSGLLRGYLNDEGWPQACRYANACGALVVSRHGCAPAMPSKIELDNYLARADAVVRPDLDVHLNHLHRVTTRRRQWPELCVMAFDHRSQLEEMALQCGADLCHISTLKTLILQASREAVHTAGLQGKAGLLCDGTFGQDALNAITGAGWWIGRPIELPGSRPLAMEHGNIGSQLIGWPQEHIVKCLVFFHPEDAYSLRLEQEQKIIEVYRACCQSGHELLLEVILPAGMPRSDELYLRAISRFYNLGVYPDWWKLPPLASEGWAALNKLIERRDPHCRGVVILGLDASLEALRTGFNAAAGYPIVKGFAVGRTLFGDASLAWLKRDIDDTQLIARIRDNYLQLITLWRERGQK
>NC_010465.1|WP_002227877.1|3340061_3340982_-|myo-inosose-2-dehydratase
MRKTEADRHTTAVQLGINPLTWTNDDLPSLGAETSLETCLSEGKEAGFAGFELGNKFSREAGVLGPILEHHQLKLVSGWYSGRLLERSVEEEIVAVRSHLALLRELGAKVMVFAEVSGCIHGEQQTPVHLRPRFPPARWAEYGAKLTAFARYTQALGVQIAYHHHMGTVIESAQDIDNLMIHTGEEVGLLLDTGHLTFAGADPLAVAQRWIARINHVHCKDVRTSVLADVKNRKTSFLDAVLSGVFTVPGDGGVDYPPIMALLKQHGYQGWLVVEAEQDPNVAHPMTYARMGYHNLSRLAHNAGLI
>NC_010465.1|WP_080513693.1|3354579_3360594_+|alpha-2-macroglobulin
MLCCLVFKGLLSMDLLRFLLISPFALIKGLYRLSAYLLRLVGRLLRPVVGNLNWRAPQWMTKTANGLHCAFNRSEQWVAKHPKGISAAIVLLMAAASAAFYGYHWYLNRPQPIEPAPMVYQETSIRVSAPRTVNYQAQKPEAQPLSLNFMHSAAPITAMGQVVDQGISLTPAIEGEWKWATERTLVFTPKKAWPMGANYQITIDAEKLLAPQIKLNQTELNFTTPAFAYQLEKAEYYQDPQEAQKRSTIFHVQFNAPVDVASFEKQILLGLVEGKSKSEKKLNFSVVYDEKKLNAWIHSQPLMPMDKGGSVHLSINKGVNASVAATPTTQAQNKWVSVPNLYSLAVNSINATLVESDNNNGERALIIAISDAVKDKEIKNAVKAWLLPQHNFQAKESAKTSTDFYPWDMDDIDDNLLQQSTPLALTLNEAEQEYQPIFSFKFDAPSYRTLLIEVNNSLTSVGGYKMPEKIYQIVRVPDYPKTLRFMSQGSLLSMQGDKQISVAARNMTGMKLDIKRVIPSQLQHIVSFKSSEYSSAHFNRLSDEYFTEHFQYQTALNNDNPGEINYQGVDLSRYLANNPSARRGVFLLTLSAWDPEKRDNQQHSEEDYDEDQEWVGDSRFVVITDLGIITKQSQDRSRDVFVQSIHSGLPTADAKVSVVAKNGVVLLSQITDSKGHVHFPALDAFKNERQPVMFLVEKEGDVSFLPTRATYDRNLDFSRFDIDGEETPSDPRTLSSYLFSDRGVYRPGDRFNIGLITRTANWATALDGVPLRAEIRDPRDTLMSTLPITLDSSGFNELSYTTGENSPTGEWNVYLYLVGKNNETSMLLGHTTVNVKEFEPDRLKVQLQLTPERQQGWVKPQELQANINVQNLFGTPAQERRVTSRLILRPMYPSFAPFPDYLFYENRHNSDGFETELEEQTTDLQGMATIPLDLKSYADATYQLQLLSEAFEAGGGRSVAATARVLVSPYDSLVGVKADGDLSYINRDAVRKLNIIAVDPSLNKIALPDLSLSLIEQKYISVLTKQDSGVYKYQSRLKEQLVSEQPLKISPTGTDFTLVTQQPGDFILVVKDSQGQVLNRISYTVAGNANLTRSLDRNTELKLKLNQAEYLQGEEIEIAINAPYAGSGLITIEKDKVYSWQWFHSDTTSSVQRIRIPPAMEGNGYINVQFVRDVNSDEIFMSPLSYGVMPFKISTKARQAAIELASPSVIKPGEVLPIKVTTDSPQRVVVFAVDEGILQVARYRLKDPLDYFFRKRELSVQSAQILDLILPEFSKLMALTSAPGGDAGEGLDLHLNPFKRKQDKPVAYWSGITEVNGETTFNYPIPDYFNGKVRVMAISATPDRIGKVQTSTTVRDNFILTPNVPAMVAPGDEFDVTVGVSNNLQGLKGKAVDITVRLTPPPQLEVVGEAQHSLSLAEKRETLVSFRLRARSALGDAPLVFDASYGSQSSRRTVSTSVRPAMPFRTQSVMGRMEGNKHTVTNLRQMFDNYAQRQATASHSPLVLTQGLARYLADYPYYSSEQIVSRSIPLIMQSKHPEMDSALNQNEVRDQLKNMLRILSSRQNSTGAIGLWHASPTPDPFVTPYVVQFLLEAKSAGYSLPNDILEGANNALRLLAARPYDDLYSLRLRAFAVYLLTLQGEITTNTLASVQSTLQQLYPDSWQTDLSAIYLASSYRLLKMDDEANKLLQPTWKQLGKAYSKAWWTQNYFDPLVQDATRLYLITRHFPEKVSSIPPQALENMVLALRDEHYTTYSSAMSILALESYTSQVAAQQDTPETLQIIEISKSKGIDPNVISTLNGLFVQGDFTGEAKAIQFNNYASAPAWYVVNQSGYDLQPPKDAISNGLEISRSYTDEQGKPVTQVTLGQKVNVHLKIRANAKQGQNNLAIVDLLPGGFEVVQQTAPEPEFYDNQDDQDEETGSGWQSPLMVSGSSWYPDYSDIREDRVIIYGSASTDVKEFIYQIKSTNTGRFVVPPAYGEAMYDRNVQALSVGKGHILVVPPEAK
>NC_010465.1|WP_138921619.1|3360701_3363014_+|penicillin-binding-protein-1C
MALFLLALLVIGFRLWPHPPLSQGLPLSTAYYDRHGTLLRLSLANDDRYRLWTPLEEISPLVIQGIQLHEDRGFYYHPGVNPISLLRGFWQSYVQGGRQQGGSTLTMQLARMHWHLNTRSPTGKLRQIARAIQLELSYSKHDILEAYLNYAPYGRNIESIAAASLIYFDKKPQQLTLPEALTLAVLPQSPSYRIDPTTGVLGSALTQARNRLFVRWQQTYPTDSSQMALFQLPLSLRQPEKMPYIAPHFIEQIRRQNQQLANTQSQVDTTLDANLQQLVEKQVEAFIRRNNSRGIHNAAVLLLDTRDMGVRALVGSANYYDREIQGQVNGTNAKRSPGSTLKPFIYALGLEQGILHPMTILKDVPSSFGAYAPENFDHRFLGPVTATDALNFSRNIPAVYVASRLRQPTLYQFLRLSGVTNMASENHYGLSLVLGGGEITLQELARLYAMLANRGTLHPIQMVQTDKTLPSIRLLSEAASFITLDMLRQHRRPGDTLAQSPTSLPVYWKTGTSWGFRDAWSAGIFGPYVLIVWEGNFAGKGNSAFVGADAAAPLFFNIIDSIQANYPALREPKHPWPPQLKRVAICLASGNLPTPWCQQQGKTWFIPGKSPIKVDTVYRPVVIDINSGQAACLPYDRSQTRTEVFEFWPSDLANVFAQAGLPKRQPPDRSHCKEGNTLASGNAPRITSPLRNTTYTLRQSQQGRDQIVFSATLDADSTTTYWFVDDIYLGSSTSKKSIDWHPTRSGQYRIRAIDDHGRADSRLIRVEKVD
>NC_010465.1|WP_002209745.1|3363226_3363472_-|transcriptional-regulator
MDKQDWHPADILAGLKKRGTTMAALSRKSGLASSTLANTLLRPWPKGERLIAEVLELHPAEIWPSRYLKPKKSPAESVNPG
>NC_010465.1|WP_012304409.1|3364144_3364987_+|hypothetical-protein
MKYDSVLKTFVDDNYRLEDHLDFKKQHADIRYQKLHKQLNEMSDENMHALLTIEEGEYFLKTLCNPNPHQSWKDAIFSCTDPTSVFFGSLVESLSVSRIVFEIRGFGVTATEYVGKNGSSYIKLSGYAGIRKYLDATRYLIDNPKILDIGIGTQGIENGIVRGARFCIVFSAAYRSVELLLKDEYGLADFFVNLTLDAAKLGVSIGVAWGAKALATGFMVAGGSVLAIAIGIFTIGVLASLILYWLDNEYKISETIIKNIKSHRVQNSPYHADQFFNAWG
>NC_010465.1|WP_032467032.1|3364994_3365396_+|DUF1240-domain-containing-protein
MVKINRPLVGAFAILLFFLSSWGCWFSLSGYLAFFKLSDVIIFSWKVGFVIFAVPLLFYFSYLAFFSAIKNKPAIMNNKLANALAILAILGSIISLFSSAYISYSLTEYSYKSCPRSSWMSPNEYVKDIKLCP
>NC_010465.1|WP_011191915.1|3366133_3366613_-|Hcp-family-type-VI-secretion-system-effector
MSNLIYASVNGKKQGLISAGCSSLNSIGNRCQAGHEDQIQVLSLNHSISRQQNVAHHPVHFVKPIDKSSPLLGVAISENERIDVVFYFYRVNSAGQLELYYEVKLTDASIVDITSVYPHSIDNNEMIPYEKIQLKYKSIAWDHKSAGTSGYSVWEDRVY
>NC_010465.1|WP_012304412.1|3366636_3366888_-|hypothetical-protein
MMTNNKTINKDEFSDELAQQIKEMINNSQLGSVEILSVVMESIFSLFSETEGHLAEMKFIDSAGEDYRFILRLEVPPILERQH
>NC_010465.1|WP_012304413.1|3366926_3367166_-|hypothetical-protein
MEKEKKTLFGHKTPAMMQLSEQLESSLHNSPLVPEEKLALIMKQCVLLFRENKTDAAEMKVSDGRILKLTLEKTSSVLH
>NC_010465.1|WP_012105540.1|3367975_3369892_+|autotransporter-adhesin-YapC
MDKTLLAGAISLSLVTLPVQVLAFTPNVVGITVNDEVVIHGIQNVRDGGVINNGLVSDNAAITVTNGSSAGTANNTTVGDKGWLQITGALATGTIVNQGGLLDTKTAGTVIDSQINDGGHMTLGLNSQSKGYLNIAAGAELFVTNNDPYTSDVTTHNPALPANVMIENLNVAGLVEIGPSWKGTSIVPLPLSDVLGPVLVTRINNVTLQGGDINLMAYSAGGQFNRLEIENLSGQGNFAMTTQLASNTGDFITVSQQATGQFGITVQDSGKEPQSADNLALVHINRGDAQFRLLNTGGVVDLGVYQYGLYSQESNGSTDWYLATSTEELPGTTPNVTAPMLSSAAQGVLNMAAAPRHILNAELSTLRQRQGELKADAEGTVGVWARYLTDDSRLSDNKNIAFKNTLSGMEIGADKQLGLNRGNMLIGAFTSYSSSDVKSTHGANGDIRSYGGGVYLTYLDQSGFYVDTVLKANRFNNKMNTQETRGEYNQNALTTSVESGYQWPVYANLVLEPYGKVSYSRIGSADYTLSNGMVAEVAKADSVQGELGTVLAASYSINQMTIKPYIKLAITREFTKSNAVAINNIGFDNDFSGNVGKYGVGINATVANNTAIFAEVDYLNGSKIETPVTANIGFRLRF
>NC_010465.1|WP_002224869.1|3370015_3370138_+|hypothetical-protein
MDVFTASLRSACSLRRGHFVNNLSPSSEGLFFLFHSILLN

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Crispr_ID: NC_010465_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010465_5

4522966-4523077

Orphan

Consensus_repeat	Method
AAAGCACATTTGAGCAGCGAGTGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010465_5

>merge|NC_010465|5|4522966-4523077|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAGCCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCCAAAGCACATTTGAGCAGCCGAGTGAA

>NC_010465|5|5|4522966-4523077|CRISPRCasFinder
AAAGCACATTTGAGCAGCGAGTGAAG	CCAGACCATCATCCTTAGGCTTTTAATACGTTTTTGATTTTGAATGGGTTGTTGACGTCC
AAAGCACATTTGAGCAGCCGAGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010465.1\|WP_002216737.1\|4530177_4530393_-\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|234576
NC_010465.1\|WP_002208936.1\|4529197_4529653_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227027
NC_010465.1\|WP_011191467.1\|4519908_4522545_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NC_010465.1\|WP_004392248.1\|4528531_4528849_+\|met-regulon-transcriptional-regulator-MetJ	unknown	unknown	gnl\|CDD\|179982
NC_010465.1\|WP_038400684.1\|4526993_4528154_-\|cystathionine-gamma-synthase	unknown	unknown	gnl\|CDD\|169194
NC_010465.1\|WP_011191468.1\|4517116_4518121_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NC_010465.1\|WP_012304750.1\|4514620_4515994_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179883
NC_010465.1\|WP_155115702.1\|4522708_4522864_-\|hypothetical-protein	unknown	unknown	unknown
NC_010465.1\|WP_002209490.1\|4518365_4519535_+\|acetylornithine-deacetylase	unknown	unknown	gnl\|CDD\|235346
NC_010465.1\|WP_002208934.1\|4524555_4526991_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	unknown	unknown	gnl\|CDD\|236530
NC_010465.1\|WP_011191465.1\|4530645_4532844_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NC_010465.1\|WP_012304746.1\|4507313_4508642_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_010465.1\|WP_012304748.1\|4510691_4511309_-\|Heme-binding-A-family-protein	unknown	unknown	gnl\|CDD\|368907
NC_010465.1\|WP_012304747.1\|4508717_4510526_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|226969
NC_010465.1\|WP_002208933.1\|4523438_4524323_-\|methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|181852
NC_010465.1\|WP_002209488.1\|4516160_4516934_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239782
NC_010465.1\|WP_002216730.1\|4533196_4534225_+\|DNA-binding-transcriptional-regulator-CytR	unknown	unknown	gnl\|CDD\|182923
NC_010465.1\|WP_002208941.1\|4534290_4535136_+\|cell-division-protein-FtsN	unknown	unknown	gnl\|CDD\|237191
NC_010465.1\|WP_012304749.1\|4511530_4513882_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	unknown	unknown	gnl\|CDD\|273807
NC_010465.1\|WP_002208942.1\|4535235_4535760_+\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477

Protein	Function_ID	Function_description	E-value
NC_010465.1\|WP_002216737.1\|4530177_4530393_-\|50S-ribosomal-protein-L31	gnl\|CDD\|234576	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed.	4.16591e-39
NC_010465.1\|WP_002208936.1\|4529197_4529653_+\|hypothetical-protein	gnl\|CDD\|227027	COG4682, COG4682, Predicted membrane protein [Function unknown].	3.96467e-66
NC_010465.1\|WP_011191467.1\|4519908_4522545_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NC_010465.1\|WP_004392248.1\|4528531_4528849_+\|met-regulon-transcriptional-regulator-MetJ	gnl\|CDD\|179982	PRK05264, PRK05264, met regulon transcriptional regulator MetJ.	1.36793e-81
NC_010465.1\|WP_038400684.1\|4526993_4528154_-\|cystathionine-gamma-synthase	gnl\|CDD\|169194	PRK08045, PRK08045, cystathionine gamma-synthase; Provisional.	0
NC_010465.1\|WP_011191468.1\|4517116_4518121_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NC_010465.1\|WP_012304750.1\|4514620_4515994_-\|argininosuccinate-lyase	gnl\|CDD\|179883	PRK04833, PRK04833, argininosuccinate lyase; Provisional.	0
NC_010465.1\|WP_002209490.1\|4518365_4519535_+\|acetylornithine-deacetylase	gnl\|CDD\|235346	PRK05111, PRK05111, acetylornithine deacetylase; Provisional.	0
NC_010465.1\|WP_002208934.1\|4524555_4526991_-\|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II	gnl\|CDD\|236530	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional.	0
NC_010465.1\|WP_011191465.1\|4530645_4532844_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NC_010465.1\|WP_012304746.1\|4507313_4508642_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.76226e-105
NC_010465.1\|WP_012304748.1\|4510691_4511309_-\|Heme-binding-A-family-protein	gnl\|CDD\|368907	pfam06438, HasA, Heme-binding protein A (HasA). Free iron is limited in vertebrate hosts, thus an alternative to siderophores has been developed by pathogenic bacteria to access host iron bound in protein complexes. HasA is a secreted hemophore that has the ability to obtain iron from hemoglobin. Once bound to HasA, the heme is shuttled to the receptor HasR, which releases the heme into the bacterium.	8.41443e-101
NC_010465.1\|WP_012304747.1\|4508717_4510526_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|226969	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only].	0
NC_010465.1\|WP_002208933.1\|4523438_4524323_-\|methylenetetrahydrofolate-reductase	gnl\|CDD\|181852	PRK09432, metF, methylenetetrahydrofolate reductase.	0
NC_010465.1\|WP_002209488.1\|4516160_4516934_-\|acetylglutamate-kinase	gnl\|CDD\|239782	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).	2.92616e-136
NC_010465.1\|WP_002216730.1\|4533196_4534225_+\|DNA-binding-transcriptional-regulator-CytR	gnl\|CDD\|182923	PRK11041, PRK11041, DNA-binding transcriptional regulator CytR; Provisional.	0
NC_010465.1\|WP_002208941.1\|4534290_4535136_+\|cell-division-protein-FtsN	gnl\|CDD\|237191	PRK12757, PRK12757, cell division protein FtsN; Provisional.	2.3223e-148
NC_010465.1\|WP_012304749.1\|4511530_4513882_-\|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor	gnl\|CDD\|273807	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein. This model represents the TonB-dependent outer membrane heme/hemoglobin receptor/transporter found in bacteria which live in contact with animals (which contain hemoglobin or other heme-bearing globins) or legumes (which contain leghemoglobin). Some species having hits to this model such as Nostoc, Caulobacter and Chlorobium do not have an obvious source of hemoglobin-like proteins in their biological niche and so the possibility exists that they act on some other substance. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	4.88122e-132
NC_010465.1\|WP_002208942.1\|4535235_4535760_+\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.88144e-131

>NC_010465.1|WP_155115702.1|4522708_4522864_-|hypothetical-protein
MSGHGRPRKARLGRDAHRAGSSARKTQAVYPQGNISRKPQVQEGRLALLLG
>NC_010465.1|WP_011191467.1|4519908_4522545_+|phosphoenolpyruvate-carboxylase
MNEQYSAMRSNVSMLGTLLGDTIKEALGEHILDRVETIRKLSKSSRAGNEASRQELLTTLQNLSNDELLPVARAFSQFLNLTNTAEQYHSISPHGEAASNPEALAQLFTRLKDKKLSDQDMRSAVDDLSIELVLTAHPTEITRRTLIHKLVEVNTCLSQLDHNDLADYERNKIMRRLRQLVAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWEGVPAFLREFNEQLENSLDYRLPVEAVPIRFTSWMGGDRDGNPNVTAEITRHVLLLSRWKATDLFLRDIQVLVSELSMSECTPELRELAGGEEVLEPYRQLMKNVRTQLTNTQAYLEARLKGERVLPPHDLLVSNDQLWEPLYACYQSLKACGMEIIANGQLLDTLRRVRCFGVPLVRIDVRQESTRHTDAIAELTRYLGLGDYESWSESDKQAFLVRELNSKRPLVPLKWEPSAETQEVLETCRVIAEAPQGSIAAYVISMAKVPSDVLAVHLLLKEAGCPFTLPVAPLFETLDDLNNADDVMTQLLGIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYRAQDALIKTCEKAGITLTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKFGLPEVTISSLALYAGAILEANLLPPPEPKKEWIEVMDLLSDASCDMYRSYVRENPEFVRYFRAATPELELGKLPLGSRPAKRRPDGGVESLRAIPWIFAWTQNRLMLPAWLGAGAGLQRAIDAGKRDVLATMCRDWPFFSTRIGMLEMVFAKADLWLAEYYDQRLVDKSLWPLGQQLRDQLAADIKVVLAIANDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQEHPDACVEQALMVTIAGVAAGMRNTG
>NC_010465.1|WP_002209490.1|4518365_4519535_+|acetylornithine-deacetylase
MKMKLPPFIELYRALIATPSISAADSALDQSNEALINLLAGWFADLGFRVEIQPVPDTRHKFNLLASIGENENGEGHGGLLLAGHTDTVPYDEGRWTRDPFTLTEHDHKLYGLGTADMKGFFAFILDAVRDIDASKLTKPLYILATADEETTMAGARYFAANTQLRPDFAIIGEPTSLQPVRAHKGHISNAIRITGQSGHSSDPARGVNAIDLMHESITQLMALRTTLQERYHNPAFTIPYPTMNFGHINGGDAANRICACCELHMDIRPLPGLTLSDLNELMTEALEPVSQRWPGRLSIDELHPPIPGYECPTDHHMVGVIEKLLGERTAVVNYCTEAPFIQQVCPTLVLGPGSINQAHQPDEFIDMAFIEPTRELIGQLVDHFCQQK
>NC_010465.1|WP_011191468.1|4517116_4518121_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MLNTLIVGASGYAGAELTAYLNRHPHMNITGLAVSAQSADAGKLLSELHPQLKGILDLPLQPLVDVAQAAKGIDVVFLATAHEVSHDLAPQFLAAGCVVFDLSGAFRVRDAAFYSQYYGFEHQHPDWLDKAVYGLAEWQSEDIKQAQLIAVPGCYPTASQLALKPLVDGQLLNDAQWPVINAVSGVSGAGRKASMGNSFCEVSLQPYGLFTHRHQPEIVAHLGTPVIFTPHLGNFARGILATITCRLKAGVTAQNIADAYHHAYQNKPLVRLYQQGVPALKAVVGLPFCDIGFSVQGEHLIIVATEDNLLKGAAAQAVQCMNIRFGFPETQSLL
>NC_010465.1|WP_002209488.1|4516160_4516934_-|acetylglutamate-kinase
MNPLVIKLGGVLLDSEEALERLFTALVTYREKHERPLVIMHGGGCLVDELMKRLALPVVKKNGLRVTPADQIDIITGALAGTANKTLLAWAVKHQINAVGLCLADGNTVTVTLLDAELGHVGKAQPGSAALVQTLLAAGYMPIISSIGITVEGQLMNVNADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAQKAEQLIAQGIITDGMVVKVNAALDAARSLGRPVDIASWRHSEQLPALFNGVPIGTRISV
>NC_010465.1|WP_012304750.1|4514620_4515994_-|argininosuccinate-lyase
MALWGGRFSQAADQRFKQFNDSLRFDYRLAEQDIIGSVAWSKALVTVGVLNADEQQQLEQALSVLLEEVQANPHAILASDAEDIHSWVETKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKFQITELQTAVQQLQQALVMTAEANQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLSRDESRLQDTLKRLDVSPLGCGALAGTAYAIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASIGMVHLSRFAEDLIFFNSGEAAFVDLSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCKEAAEQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKALEALALSDLQQFSSVIGDDVYPILALQSCLDKRVAKGGVSPQQVASAIAEAKARLF
>NC_010465.1|WP_012304749.1|4511530_4513882_-|TonB-dependent-hemoglobin/transferrin/lactoferrin-family-receptor
MALDKLNVEGKGNAHDSDWIYDEPRSVSEITREQLDNRPARHAADILEQTPGVYSSVSQQDPGLSINIRGIQDYGRVNMNIDGMRQNFMKSGHGQRNGSMYIDPEILSNVVIERGIFNGIGGAGAIGGIATFNTINASDFLAPEKELGGHIRAMTGDNGTRFIGSGALALGNPNGDILLAVSERNLKDYWPGNKGVLAGLRLYSPTRNVGDDLKNTKTLFTGYKMRSQLAKVGWNFEAGQRLEFSYLQTQIASPNASMLSEVLALSPSGKEITKIGWRNTSFTNVENRNIALDYRLNPEHISWLDATAKIYYVDTNDETDNANSLFKEYFWTQTRLKTRGLQLQNTNTFTPSDAHQIRLKYGLEWFSDKSEGYSTRKLIERTTPPGKRAITSTFAQLNYEYDDWLRLEGGLRYDQFRLKGNTWLHTRSFLQPYTFENPCDRRIHEQSEKPGSRCSSRRPATMRWDVDRREQQLSPTLAMGVKPGLEWLEFFGSYGKSWRPPAMTEVLATGTAHGYSWVLPNPFVAAERARTWEAGFNIQQSNLFIEDDHFAAKVAYFDTRIANYINLELGKAKPKFGGDSFTDVAYVNNLLKTRFRGLEYQLSYDAGTFYTNINYTRMIGVNNVCSPYAWLGGLQSVKYKYVGKVEQIYAVENEVANNYVTCMNANVLFGSSAYLPGDRGSLTLGSRIFDRRLDFGTVIRYNKGYQDRSAQDENGNPLTAYVADWPKYIVYDLYASYKVTNNLILRSSIENITNRAYLVNYGDTLSFAPSRGRTIQGGFEYKF
>NC_010465.1|WP_012304748.1|4510691_4511309_-|Heme-binding-A-family-protein
MSTTIQYNSNYADYSISSYLREWANNFGDIDQAPAETKDRGSFSGSSTLFSGTQYAIGSSHSNPEGMIAEGDLKYSFMPQHTFHGQIDTLQFGKDLATNAGGPSAGKHLEKIDITFNELDLSGEFDSGKSMTENHQGDMHKSVRGLMKGNPDPMLEVMKAKGINVDTAFKDLSIASQSPDSGYMSDAPMVDTVGVVDCHDMLLAA
>NC_010465.1|WP_012304747.1|4508717_4510526_-|type-I-secretion-system-permease/ATPase
MESCKTPRASSVPPTILSVLAGNKKILWGIGLFTAVINLLMLAPAIYMLQVYDRVLASANTMTLLMLTVLVLGVFVFIGLLEWVRSAVVIRLGTQIDMQLNQPVFNAAFAANLKGHNTPAAQALNDLTVLRQFATGNALFAFFDAPWFPLYLLVIFLLHPWLGMLAAAGAGILVFLAWLNQWICKKPLHDASIITSHATQQANANLRNADVIEAMGMLKALRERWLMQHANFLYQQNLASDKSSRVTAVAKSSRQALQSMMLGLGALLVIYNEITAGVMIAGSILIGRVLGPIDQLIAVWKQWSHARLAYQRLSQLLAQHPSSPTGMVLPAPQGKLNVTQLMACKPGTHIPVLHSINFELQPGDVLGILGPSGSGKSTLAKLLVASQPAFSGTVRLDSADLSRWDKTQLGEFIGYLPQNIQLFRGTVAENIARFGAIDTAKVVAAAQLADVHNLILHLPQGYDTPLGDDGEGLSGGQRQRIALARAMYGIPRLIVLDEPNASLDKEGEQALLASIIQLKQQGCTIVMITHKPELLSGSDYLLFLKNGQMDLFDRTQAVLQNIQGKDKPAVQPEAKIRNSRSGWSNGVSYGIGPARTTSSPKP
>NC_010465.1|WP_012304746.1|4507313_4508642_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MLPESACYSVANANRQPPLQINSGRYLNIGGGLVVIGFIGFLLWAGLAPLDKGVAVTGLLVVAENRKVIQPLQGGRIQQLHVTEGDEIVSGQLLVTLDDTAIRNQRDNLQHQYLSALAQEARLTAEQNDLDVITFPQALLEHATQPAVERNIILQQQLLHHRRQAHLSEIARLSTQLTRHQARLDGLQAMRSNHQRQSNLFQQQLDSVQLLAKDGYIAKNKLLEMESQLTSLQARVEQGTSDIAEAHKLIDETEQHVLQRREQYQSENSEQLAKAQQNTQELVQRLNIAEYELSHTRIFAPVSGSVIALAQHTVGGVVSSGQALMEIVPSGQPLFVEAQLPVELIDKVTVGLPVDLNFSAFNQSNTPRLQGSVWRIGADRIQPPPTSPPYYPLTVAIDLDPTELAIRPGMAVDVFIRTGERSLLSYLFKPFTDRLHLALAEE
>NC_010465.1|WP_002208933.1|4523438_4524323_-|methylenetetrahydrofolate-reductase
MSFFHANQREALNQSLSELQGQINVSFEFFPPRTSEMEDTLWSSIDRLSTLKPKFVSVTYGANSGERDRTHSIIKGIKERTGLEAAPHLTCIDASPTQLRDIAIDYWNSGIRHIVALRGDLPPNSGKPEMYACDLVGLLKDVGDFDISVAAYPEIHPEAKSAQADLINLKRKIDAGANRAITQFFFDVESYLRFRDRCVATGIDVEIVPGILPVSNFKQLQRFATMTNVRVPNWMTSIFDGLDNDPETRKMVGASVAMDMVKILSREGVKDFHFYTLNRAELSYAICHTLGVRP
>NC_010465.1|WP_002208934.1|4524555_4526991_-|bifunctional-aspartate-kinase/homoserine-dehydrogenase-II
MNATAVAAAATGRQLHKFGGSSLADVKCYLRVANIMANYSHPGDLMVVSAAGSTTNQLISWLKLSQNDRLSAHQVQQSLRRYQHDLINGLLPPEMAEPLISEFIHDLERLAGLLDNKIDDVIYAEVVGHGEIWSARLMSALLNKLDMDAVWLDARRFLRAERAAQPQIDESRSYPLLQQLMAQHPHQRLVVTGFISRNEAGETVLLGRNGSDYSATQVGALAGAERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHTRTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLASGLGAKIVTSHDDVCLIELQIASHHDFSLAQKEIDLLLKRAQIKPLATGIHPDRNLLQLCYTSEVVNSALRVLEDAALPGKLSLREGLALVALVGAGVSKNPLHSHRFYQQLKDQPVEFVWQAEDGISMVAVLRLGPTEHLIQGLHQSLFRAEKRIGLMLFGKGNIGARWLELFAREQKSLSARSGFEFVLAGVVDSRRSLLSYDGLDASRTLAFYNDEAKEQDEESLFLWMRAHPFDDLVVLDVTASPSLAEQYLDFASYGFHVISANKLAGASSSNNYRQIRDAFAKTGRHWLYNATVGAGLPVNHTVRDLRDSGDSILAISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRVDLSGQDVMRKLVILAREAGYDIEPNQVRVESLVPAGAESGSVDQFFENGEALNQQMIQRLEAAKEMGLVLRYVARFDANGKARVGVEAVRTDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDLNRLSQLL
>NC_010465.1|WP_038400684.1|4526993_4528154_-|cystathionine-gamma-synthase
MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFIDFNQPRTHDYSRRGNPTRDVVQRALAELEGGAGAVMTSSGMSALHLVCTTFLQPGDLLVAPHDCYGGSYRLFDSLSKRGAYRVLFVDQGDEAALNRALAEKPKLVLIETPSNPLLRVVDIAAICQAARAAGALTVCDNTFLSPALQQPLSLGADLVVHSCTKYLNGHSDVVAGAVIAKDPELVVELAWWANNIGVTGAAFDSYLLLRGLRTLSPRMAQQQRNADDIVRYLQQQPLVKKLYHPSLPQHPGHEIACRQQSGFGAMLSFELDGDEQVMRRFLSALELFTLAESLGGVESLISHAATMTHAGMAAEARIAAGITDSLLRISVGIEDSEDLIADLDHAFQLAVTR
>NC_010465.1|WP_004392248.1|4528531_4528849_+|met-regulon-transcriptional-regulator-MetJ
MAEWNGEYVSPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRRQVNNLRHATNSELLCEAFLHAFTGQPLPNDEDLRKERSDEIPEAAKILMRELGVDPDTWEY
>NC_010465.1|WP_002208936.1|4529197_4529653_+|hypothetical-protein
MNPNYAKPSAAFTAASWSALLGGFVIFLIGLWNADMQLNERGYYFAVLILGLFSAVSLQKTVRDKLEGLAITSIYYGLCWVAFIVAVLLLCIGLWNATLALSEKGFYGVTFFMTLFGAIAVQKNTRDSAMSSDTESASLFKKVRDQLKAED
>NC_010465.1|WP_002216737.1|4530177_4530393_-|50S-ribosomal-protein-L31
MKQGIHPKYEQVTASCSCGNVIKINSTVGHDLNLDVCGECHPFYTGKQRDVASGGRVDRFNKRFSVPGAKK
>NC_010465.1|WP_011191465.1|4530645_4532844_+|primosomal-protein-N'
MSVVQVALPVPLARTFDYRLDSAMACPVVGARVSVPFGKRKAIGIVVGLSDTSTFPLEQLKTIDAILDNHSLFPPSLWRILCWATEYYHYPIGEVLFHALPILLRQGRPAQSAPLWQWFVTEQGRATPPESLKRAPKQQQALAALLQKPVYRHQVNEMALTESALQALRSKGLIDLRAQEATTTDWRHSFSVLGERLRLNTEQATAVGAIRSEDNQFAAWLLAGVTGSGKTEVYLSVLENILAQGRQALILVPEIGLTPQTIARFRERFNAPVEVLHSGLNDSERLSVWLRARSGEAAIVIGTRSALFTPFSRLGVIIIDEEHDSSYKQQEGWRYHARDLAVFRAREEGIPIVMGTATPALETLHNVQMGKYRQLTLTKRAGSAKPAAQHLLDLKGLPLKVGLSQPLLKRMKTHLQAGNQVILFLNRRGYAPALLCHECGWIAECQRCDHYYTLHQNHRQLRCHHCDSQRPVPQQCPKCGSTHLVSVGVGTEQLENELAPLFPETPITRIDRDTTSRKGSLEQHLADVHQGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSADFRSAERFAQLYTQVSGRAGRAGKQGEVILQTHHPEHPLLQILLQQGYDAFAKQALEERKSVFLPPYTSHIIVRSEDHDNQQSALFLQQLRNLLEASPLKDEALWIMGPVPALQAKRGGRFRWQLLLQHPSRQLLQRLIKTSQPLISTLPQARKVKWTIDVDPIDS
>NC_010465.1|WP_002216730.1|4533196_4534225_+|DNA-binding-transcriptional-regulator-CytR
MENKKEFTMTTMKDVAEMAGVSTATVSRALMNPEKVSTVTRQKVEQAVLAVGYSPHALSRNIKRNESRTILVIVPDISDPFFADVIQGIEHAAAQQGYLILIGDCAQQTQQERTFVNLIITKQIDGMLLLGSNLPFDASKEEQRNLPPMVMANEFAPELELPTVHIDNLTAAYEAVNYLHELGHKRIACIAGPESLPLSHYRLQGYIQALRRNGITVDNDYIIRGDFSYEAGAQSFAALMELPHPPTAIFSHNDVMAVGAIWQAKQLGLRIPQDVSLVGFDDLKLSQFCDPPLTTVAQPRYQIGQQAMLLLLEQLQGHSVQSGSRLLDTELIIRESTAAPKH
>NC_010465.1|WP_002208941.1|4534290_4535136_+|cell-division-protein-FtsN
MAQRDYVSRGRSGARRKSTSRKKRSAPIVSKTVMALAVALLVVFVGGLYFITHNKPGELPLLPNHDPRTGNGLPPKPEERWRYIKELENRQIGVPMPTEPSAGGEVNAKTELTNEQRQLLEQMQADMRQQPTQLSEVPYNQGMQQVPRSAVTIKPPATSVQPQPVTPPRQTTIPVQPQAPAPVRTPPAAPVTQAVTPPKVEKEKEKTQRWMVQCGSFKAVDQAESIRAQLAFAGIESRITSGGGWNRVVLGPYNSKAAADKALQRLQGAGQSGCIPLSVGG
>NC_010465.1|WP_002208942.1|4535235_4535760_+|ATP-dependent-protease-subunit-HslV
MTTIVSVRRDGHVVIGGDGQVTLGNTVMKGNAKKVRRLYNNKVIAGFAGGTADAFTLFELFERKLEMHQGHLTKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPEDDLIAIGSGGPYAQSAARALLENTELGARDIVEKSLSIAGDICIYTNRFQTIEELTY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010465_3	3.2\|2756364\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756364-2756395	32	NC_010465.1	1349824-1349855	0	1.0

1. spacer 3.2|2756364|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to position: 1349824-1349855, mismatch: 0, identity: 1.0

atccagtgtcactgctgggaaggtttcaagtt	CRISPR spacer
atccagtgtcactgctgggaaggtttcaagtt	Protospacer
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MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010465_4	4.1\|3354048\|36\|NC_010465\|CRISPRCasFinder	3354048-3354083	36	NZ_CP028488	Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence	94279-94314	4	0.889
NC_010465_2	2.2\|1821437\|30\|NC_010465\|PILER-CR	1821437-1821466	30	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	8562-8591	6	0.8
NC_010465_2	2.2\|1821437\|30\|NC_010465\|PILER-CR	1821437-1821466	30	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	13607-13636	6	0.8
NC_010465_4	4.1\|3354048\|36\|NC_010465\|CRISPRCasFinder	3354048-3354083	36	NZ_CP054046	Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence	5758-5793	6	0.833
NC_010465_4	4.1\|3354048\|36\|NC_010465\|CRISPRCasFinder	3354048-3354083	36	NZ_CP032488	Yersinia hibernica strain CFS1934 plasmid pCFS1934, complete sequence	55932-55967	6	0.833
NC_010465_4	4.1\|3354048\|36\|NC_010465\|CRISPRCasFinder	3354048-3354083	36	NZ_CP032236	Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence	10438-10473	6	0.833
NC_010465_4	4.1\|3354048\|36\|NC_010465\|CRISPRCasFinder	3354048-3354083	36	NZ_CP025802	Yersinia ruckeri strain SC09 plasmid pLT, complete sequence	50213-50248	6	0.833
NC_010465_4	4.1\|3354048\|36\|NC_010465\|CRISPRCasFinder	3354048-3354083	36	NZ_CP054047	Yersinia massiliensis strain 2011N-4075 plasmid unnamed2, complete sequence	45314-45349	6	0.833
NC_010465_4	4.1\|3354048\|36\|NC_010465\|CRISPRCasFinder	3354048-3354083	36	NZ_LN681230	Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence	40349-40384	6	0.833
NC_010465_2	2.2\|1821437\|30\|NC_010465\|PILER-CR	1821437-1821466	30	MK415399	CrAssphage apr34_000142F, complete genome	69236-69265	7	0.767
NC_010465_2	2.4\|1821435\|32\|NC_010465\|CRISPRCasFinder,CRT	1821435-1821466	32	MK415399	CrAssphage apr34_000142F, complete genome	69234-69265	7	0.781
NC_010465_2	2.32\|1823119\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823119-1823150	32	MG592478	Vibrio phage 1.106.O._10N.286.51.F7, partial genome	29994-30025	7	0.781
NC_010465_2	2.35\|1823299\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823299-1823330	32	NC_031245	Bacillus phage SP-15, complete genome	73321-73352	7	0.781
NC_010465_2	2.35\|1823299\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823299-1823330	32	NC_002669	Lactococcus prophage bIL310, complete genome	6684-6715	7	0.781
NC_010465_2	2.35\|1823299\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823299-1823330	32	AF323671	Bacteriophage bIL310, complete genome	6684-6715	7	0.781
NC_010465_2	2.43\|1823779\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823779-1823810	32	NC_014633	Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence	667960-667991	7	0.781
NC_010465_2	2.43\|1823779\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823779-1823810	32	HQ634191	Cyanophage Syn10 genomic sequence	75660-75691	7	0.781
NC_010465_2	2.43\|1823779\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823779-1823810	32	DQ149023	Synechococcus cyanophage syn9, complete genome	74358-74389	7	0.781
NC_010465_2	2.43\|1823779\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823779-1823810	32	NC_008296	Synechococcus phage syn9, complete genome	74358-74389	7	0.781
NC_010465_3	3.23\|2757624\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757624-2757655	32	MN694297	Marine virus AFVG_250M922, complete genome	29848-29879	7	0.781
NC_010465_3	3.23\|2757624\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757624-2757655	32	MT658805	Gordonia phage Rabbitrun, complete genome	39190-39221	7	0.781
NC_010465_2	2.14\|1822036\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1822036-1822067	32	LC554890	Ralstonia phage RP13 DNA, nearly complete genome	136984-137015	8	0.75
NC_010465_2	2.14\|1822036\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1822036-1822067	32	NZ_CP028874	Borreliella bavariensis PBi plasmid lp25_cp32-3, complete sequence	50195-50226	8	0.75
NC_010465_2	2.17\|1822217\|33\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1822217-1822249	33	NZ_CP021116	Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence	91032-91064	8	0.758
NC_010465_2	2.24\|1822638\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1822638-1822669	32	NZ_CP031358	Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence	322747-322778	8	0.75
NC_010465_2	2.35\|1823299\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823299-1823330	32	NZ_CP040048	Acinetobacter baumannii strain VB1190 plasmid unnamed1, complete sequence	191773-191804	8	0.75
NC_010465_2	2.35\|1823299\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823299-1823330	32	CAJCJZ010000002	Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence	56473-56504	8	0.75
NC_010465_2	2.35\|1823299\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823299-1823330	32	MT119360	Enterococcus phage nattely, complete genome	27611-27642	8	0.75
NC_010465_2	2.35\|1823299\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823299-1823330	32	NZ_CP007001	Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP2, complete sequence	5855-5886	8	0.75
NC_010465_2	2.39\|1823539\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823539-1823570	32	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	1182450-1182481	8	0.75
NC_010465_2	2.39\|1823539\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823539-1823570	32	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	1365842-1365873	8	0.75
NC_010465_2	2.39\|1823539\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823539-1823570	32	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	394067-394098	8	0.75
NC_010465_2	2.43\|1823779\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823779-1823810	32	MF422185	Bacillus phage BSP10, complete genome	22163-22194	8	0.75
NC_010465_2	2.43\|1823779\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823779-1823810	32	NC_030903	Bacillus phage SPG24 DNA, contig00001 sequence	22300-22331	8	0.75
NC_010465_2	2.43\|1823779\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823779-1823810	32	MG000860	Bacillus phage BSP9, complete genome	22574-22605	8	0.75
NC_010465_2	2.45\|1823899\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823899-1823930	32	NZ_CP017764	Bacillus subtilis strain 29R7-12 plasmid unnamed1, complete sequence	12517-12548	8	0.75
NC_010465_2	2.45\|1823899\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823899-1823930	32	NZ_CP032868	Bacillus subtilis subsp. subtilis strain N4-2 plasmid unnamed1, complete sequence	7979-8010	8	0.75
NC_010465_2	2.45\|1823899\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823899-1823930	32	NZ_CP032864	Bacillus subtilis subsp. subtilis strain N2-2 plasmid unnamed1, complete sequence	21982-22013	8	0.75
NC_010465_2	2.45\|1823899\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823899-1823930	32	NZ_CP032866	Bacillus subtilis subsp. subtilis strain N3-1 plasmid unnamed1, complete sequence	6216-6247	8	0.75
NC_010465_2	2.45\|1823899\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823899-1823930	32	NZ_CP021893	Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence	45668-45699	8	0.75
NC_010465_2	2.45\|1823899\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823899-1823930	32	NZ_CP041370	Bacillus sp. M4U3P1 plasmid unnamed1, complete sequence	32219-32250	8	0.75
NC_010465_2	2.45\|1823899\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823899-1823930	32	NZ_CP020024	Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence	59430-59461	8	0.75
NC_010465_2	2.45\|1823899\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823899-1823930	32	NZ_CP032862	Bacillus subtilis subsp. subtilis strain N1-1 plasmid unnamed1, complete sequence	41050-41081	8	0.75
NC_010465_2	2.45\|1823899\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823899-1823930	32	NZ_CP018185	Bacillus subtilis strain KH2 plasmid, complete sequence	21602-21633	8	0.75
NC_010465_2	2.45\|1823899\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823899-1823930	32	NC_015148	Bacillus subtilis subsp. natto plasmid pLS20 DNA, complete sequence, strain: IFO 3335	34088-34119	8	0.75
NC_010465_2	2.45\|1823899\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823899-1823930	32	NZ_CP014473	Bacillus subtilis subsp. natto strain CGMCC 2108 plasmid unnamed2, complete sequence	34088-34119	8	0.75
NC_010465_2	2.46\|1823959\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823959-1823990	32	KM589504	Microviridae Fen2266_11, complete genome	3436-3467	8	0.75
NC_010465_3	3.1\|2756304\|32\|NC_010465\|CRISPRCasFinder,CRT	2756304-2756335	32	NZ_CP018634	Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444 plasmid pSE49-2444, complete sequence	78798-78829	8	0.75
NC_010465_3	3.1\|2756304\|32\|NC_010465\|CRISPRCasFinder,CRT	2756304-2756335	32	NZ_CP045959	Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence	238023-238054	8	0.75
NC_010465_3	3.9\|2756784\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756784-2756815	32	MN871511	UNVERIFIED: Vibrio phage vspsw1, complete genome	100096-100127	8	0.75
NC_010465_3	3.9\|2756784\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756784-2756815	32	MN871505	UNVERIFIED: Vibrio phage ValDsh2, complete genome	4854-4885	8	0.75
NC_010465_3	3.9\|2756784\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756784-2756815	32	MT442039	Vibrio phage vB_ValS_X1, partial genome	4703-4734	8	0.75
NC_010465_3	3.9\|2756784\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756784-2756815	32	MN871510	UNVERIFIED: Vibrio phage valsw3, complete genome	88766-88797	8	0.75
NC_010465_3	3.9\|2756784\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756784-2756815	32	MH925094	UNVERIFIED: Vibrio phage VspSw_1, complete genome	4901-4932	8	0.75
NC_010465_3	3.9\|2756784\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756784-2756815	32	CP024913	Cyanobacterium sp. HL-69 plasmid pCHL69-1, complete sequence	37927-37958	8	0.75
NC_010465_3	3.9\|2756784\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756784-2756815	32	NC_019515	Bacillus phage BCD7, complete genome	66304-66335	8	0.75
NC_010465_3	3.10\|2756844\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756844-2756875	32	KY593455	Yersinia phage fHe-Yen9-01, complete genome	110831-110862	8	0.75
NC_010465_3	3.22\|2757564\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757564-2757595	32	AP014715	Edwardsiella phage PEi26 DNA, complete sequence	168474-168505	8	0.75
NC_010465_3	3.22\|2757564\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757564-2757595	32	NC_028683	Edwardsiella phage PEi20 DNA, complete sequence	168902-168933	8	0.75
NC_010465_3	3.22\|2757564\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757564-2757595	32	MN087708	Edwardsiella phage vB_EtaM-IME523, complete genome	164248-164279	8	0.75
NC_010465_3	3.23\|2757624\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757624-2757655	32	NZ_CP021082	Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence	180764-180795	8	0.75
NC_010465_2	2.2\|1821437\|30\|NC_010465\|PILER-CR	1821437-1821466	30	AP013497	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S35-C79	14068-14097	9	0.7
NC_010465_2	2.2\|1821437\|30\|NC_010465\|PILER-CR	1821437-1821466	30	AP013776	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S36-C73, * SEQUENCING IN PROGRESS *	27991-28020	9	0.7
NC_010465_2	2.2\|1821437\|30\|NC_010465\|PILER-CR	1821437-1821466	30	AP013496	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S28-C61	1669-1698	9	0.7
NC_010465_2	2.2\|1821437\|30\|NC_010465\|PILER-CR	1821437-1821466	30	AP013775	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S26-C73, * SEQUENCING IN PROGRESS *	18692-18721	9	0.7
NC_010465_2	2.2\|1821437\|30\|NC_010465\|PILER-CR	1821437-1821466	30	AP013499	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S39-C84	12975-13004	9	0.7
NC_010465_2	2.2\|1821437\|30\|NC_010465\|PILER-CR	1821437-1821466	30	AP013498	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S38-C76	14748-14777	9	0.7
NC_010465_2	2.23\|1822578\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1822578-1822609	32	NZ_CP024658	Bacillus cereus strain MLY1 plasmid pMLY1.3, complete sequence	90031-90062	9	0.719
NC_010465_2	2.33\|1823179\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823179-1823210	32	MG945697	UNVERIFIED: Microviridae sp. isolate 1609-1801, complete genome	162-193	9	0.719
NC_010465_2	2.33\|1823179\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823179-1823210	32	MG945692	UNVERIFIED: Microviridae sp. isolate 1534-1801, complete genome	162-193	9	0.719
NC_010465_2	2.33\|1823179\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823179-1823210	32	MG945734	UNVERIFIED: Microviridae sp. isolate 2370-1801, complete genome	162-193	9	0.719
NC_010465_2	2.33\|1823179\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823179-1823210	32	MG945482	UNVERIFIED: Microviridae sp. isolate 838-1801, complete genome	162-193	9	0.719
NC_010465_2	2.33\|1823179\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823179-1823210	32	MG945384	UNVERIFIED: Microviridae sp. isolate 3176-1801, complete genome	162-193	9	0.719
NC_010465_2	2.33\|1823179\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823179-1823210	32	MG883720	Microviridae sp. isolate Pig101, complete genome	162-193	9	0.719
NC_010465_2	2.33\|1823179\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823179-1823210	32	MG945698	UNVERIFIED: Microviridae sp. isolate 1684-1801, complete genome	162-193	9	0.719
NC_010465_2	2.35\|1823299\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823299-1823330	32	NZ_CP011408	Vibrio parahaemolyticus strain FORC_014 plasmid pFORC14, complete sequence	12171-12202	9	0.719
NC_010465_2	2.35\|1823299\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823299-1823330	32	MH412654	Synechococcus phage S-T4, complete genome	71905-71936	9	0.719
NC_010465_2	2.43\|1823779\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823779-1823810	32	NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	2151-2182	9	0.719
NC_010465_2	2.43\|1823779\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823779-1823810	32	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	226585-226616	9	0.719
NC_010465_3	3.1\|2756304\|32\|NC_010465\|CRISPRCasFinder,CRT	2756304-2756335	32	NZ_CP030220	Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence	55282-55313	9	0.719
NC_010465_3	3.1\|2756304\|32\|NC_010465\|CRISPRCasFinder,CRT	2756304-2756335	32	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	208377-208408	9	0.719
NC_010465_3	3.1\|2756304\|32\|NC_010465\|CRISPRCasFinder,CRT	2756304-2756335	32	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	207530-207561	9	0.719
NC_010465_3	3.1\|2756304\|32\|NC_010465\|CRISPRCasFinder,CRT	2756304-2756335	32	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	207546-207577	9	0.719
NC_010465_3	3.1\|2756304\|32\|NC_010465\|CRISPRCasFinder,CRT	2756304-2756335	32	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	207543-207574	9	0.719
NC_010465_3	3.1\|2756304\|32\|NC_010465\|CRISPRCasFinder,CRT	2756304-2756335	32	NZ_CP027765	Escherichia coli strain 2015C-3125 plasmid unnamed2, complete sequence	38564-38595	9	0.719
NC_010465_3	3.8\|2756724\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756724-2756755	32	MK448839	Streptococcus phage Javan102, complete genome	4669-4700	9	0.719
NC_010465_3	3.8\|2756724\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756724-2756755	32	MK448667	Streptococcus phage Javan105, complete genome	4669-4700	9	0.719
NC_010465_3	3.8\|2756724\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756724-2756755	32	MK448843	Streptococcus phage Javan112, complete genome	4668-4699	9	0.719
NC_010465_3	3.8\|2756724\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756724-2756755	32	MK448841	Streptococcus phage Javan108, complete genome	4669-4700	9	0.719
NC_010465_3	3.9\|2756784\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756784-2756815	32	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	129965-129996	9	0.719
NC_010465_3	3.10\|2756844\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756844-2756875	32	MN693429	Marine virus AFVG_25M409, complete genome	4973-5004	9	0.719
NC_010465_3	3.11\|2756904\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756904-2756935	32	NZ_MH909329	Leclercia adecarboxylata strain 150707804 plasmid p707804-3FII, complete sequence	99984-100015	9	0.719
NC_010465_3	3.13\|2757024\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757024-2757055	32	NC_015383	Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence	234929-234960	9	0.719
NC_010465_3	3.13\|2757024\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757024-2757055	32	NC_015383	Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence	344383-344414	9	0.719
NC_010465_3	3.16\|2757204\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757204-2757235	32	LR135896	uncultured phage genomic DNA containing rbcL region region	85234-85265	9	0.719
NC_010465_3	3.16\|2757204\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757204-2757235	32	MN693157	Marine virus AFVG_25M322, complete genome	1595-1626	9	0.719
NC_010465_3	3.18\|2757324\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757324-2757355	32	MH766655	Curvibacter phage TJ1, complete genome	26581-26612	9	0.719
NC_010465_3	3.23\|2757624\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757624-2757655	32	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	60681-60712	9	0.719
NC_010465_3	3.26\|2757805\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757805-2757836	32	NC_014031	Bacillus megaterium QM B1551 plasmid pBM600, complete sequence	17611-17642	9	0.719
NC_010465_3	3.28\|2757925\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757925-2757956	32	NC_010371	Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence	19107-19138	9	0.719
NC_010465_3	3.28\|2757925\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757925-2757956	32	MK867354	Synechococcus phage S-SCSM1, complete genome	24374-24405	9	0.719
NC_010465_2	2.43\|1823779\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1823779-1823810	32	NZ_KX785326	Streptococcus suis strain 3366 plasmid unnamed1, complete sequence	1924-1955	10	0.688
NC_010465_3	3.3\|2756424\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756424-2756455	32	NZ_CP015439	Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence	188549-188580	10	0.688
NC_010465_3	3.5\|2756544\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756544-2756575	32	MK448796	Streptococcus phage Javan53, complete genome	25339-25370	10	0.688
NC_010465_3	3.10\|2756844\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756844-2756875	32	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	567124-567155	10	0.688
NC_010465_3	3.22\|2757564\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2757564-2757595	32	NZ_CP018077	Sulfitobacter sp. AM1-D1 plasmid unnamed1, complete sequence	113544-113575	10	0.688
NC_010465_2	2.4\|1821435\|32\|NC_010465\|CRISPRCasFinder,CRT	1821435-1821466	32	AP013499	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S39-C84	12975-13006	11	0.656
NC_010465_2	2.4\|1821435\|32\|NC_010465\|CRISPRCasFinder,CRT	1821435-1821466	32	AP013497	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S35-C79	14066-14097	11	0.656
NC_010465_2	2.4\|1821435\|32\|NC_010465\|CRISPRCasFinder,CRT	1821435-1821466	32	AP013498	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S38-C76	14748-14779	11	0.656
NC_010465_2	2.4\|1821435\|32\|NC_010465\|CRISPRCasFinder,CRT	1821435-1821466	32	AP013776	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S36-C73, * SEQUENCING IN PROGRESS *	27989-28020	11	0.656
NC_010465_2	2.4\|1821435\|32\|NC_010465\|CRISPRCasFinder,CRT	1821435-1821466	32	AP013496	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S28-C61	1667-1698	11	0.656
NC_010465_2	2.4\|1821435\|32\|NC_010465\|CRISPRCasFinder,CRT	1821435-1821466	32	AP013775	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S26-C73, * SEQUENCING IN PROGRESS *	18690-18721	11	0.656
NC_010465_2	2.24\|1822638\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1822638-1822669	32	MG873442	Salmonella phage SE131, complete genome	52763-52794	11	0.656
NC_010465_2	2.24\|1822638\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	1822638-1822669	32	NC_015938	Salmonella phage 7-11, complete genome	38146-38177	11	0.656

1. spacer 4.1|3354048|36|NC_010465|CRISPRCasFinder matches to NZ_CP028488 (Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.889

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
gcattgccgttgaagagatccgtcattggcttggcc	Protospacer
************************.*******  .*

2. spacer 2.2|1821437|30|NC_010465|PILER-CR matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 6, identity: 0.8

aattattactgttgataaacttatcgatac	CRISPR spacer
aagcaatactgctgataaacttatcgagcc	Protospacer
** .* *****.***************  *

3. spacer 2.2|1821437|30|NC_010465|PILER-CR matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 6, identity: 0.8

aattattactgttgataaacttatcgatac	CRISPR spacer
aagcaatactgctgataaacttatcgagcc	Protospacer
** .* *****.***************  *

4. spacer 4.1|3354048|36|NC_010465|CRISPRCasFinder matches to NZ_CP054046 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
gcattgccgttgaagagatccgccattggctgggcc	Protospacer
**********************.*.******   .*

5. spacer 4.1|3354048|36|NC_010465|CRISPRCasFinder matches to NZ_CP032488 (Yersinia hibernica strain CFS1934 plasmid pCFS1934, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
gcattgccgttgaagagatccgccattggctgggcc	Protospacer
**********************.*.******   .*

6. spacer 4.1|3354048|36|NC_010465|CRISPRCasFinder matches to NZ_CP032236 (Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
ggatcgccgttgaagagatccgtcattggcttggcc	Protospacer
* **.*******************.*******  .*

7. spacer 4.1|3354048|36|NC_010465|CRISPRCasFinder matches to NZ_CP025802 (Yersinia ruckeri strain SC09 plasmid pLT, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
ggatcgccgttgaagagatccgtcattggcttggcc	Protospacer
* **.*******************.*******  .*

8. spacer 4.1|3354048|36|NC_010465|CRISPRCasFinder matches to NZ_CP054047 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
gtattgctgttgaagagatccgtcattggcttggcc	Protospacer
*.*****.****************.*******  .*

9. spacer 4.1|3354048|36|NC_010465|CRISPRCasFinder matches to NZ_LN681230 (Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
ggatcgccgttgaagagatccgtcattggcttggcc	Protospacer
* **.*******************.*******  .*

10. spacer 2.2|1821437|30|NC_010465|PILER-CR matches to MK415399 (CrAssphage apr34_000142F, complete genome) position: , mismatch: 7, identity: 0.767

aattattactgttgataaacttatcgatac	CRISPR spacer
tattaatactgttgataaagttatcaaggt	Protospacer
 **** ************* *****.* ..

11. spacer 2.4|1821435|32|NC_010465|CRISPRCasFinder,CRT matches to MK415399 (CrAssphage apr34_000142F, complete genome) position: , mismatch: 7, identity: 0.781

aattattactgttgataaacttatcgatactg	CRISPR spacer
tattaatactgttgataaagttatcaaggttg	Protospacer
 **** ************* *****.* ..**

12. spacer 2.32|1823119|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MG592478 (Vibrio phage 1.106.O._10N.286.51.F7, partial genome) position: , mismatch: 7, identity: 0.781

----accgtgcaagtctggcgggttggtttcgccac	CRISPR spacer
agatactgc----gtctggcgggttggttacgccac	Protospacer
    **.*.    **************** ******

13. spacer 2.35|1823299|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_031245 (Bacillus phage SP-15, complete genome) position: , mismatch: 7, identity: 0.781

atggtgtcatcatcaataataaaaccaaatga	CRISPR spacer
atggtgtcatcttcaataataaaattaataac	Protospacer
*********** ************..**  .

14. spacer 2.35|1823299|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_002669 (Lactococcus prophage bIL310, complete genome) position: , mismatch: 7, identity: 0.781

atggtgtcatcatcaataataaaaccaaatga--	CRISPR spacer
ttgatgtcatcatcaaaaataaaa--atgtgatt	Protospacer
 **.************ *******  * .***

15. spacer 2.35|1823299|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to AF323671 (Bacteriophage bIL310, complete genome) position: , mismatch: 7, identity: 0.781

atggtgtcatcatcaataataaaaccaaatga--	CRISPR spacer
ttgatgtcatcatcaaaaataaaa--atgtgatt	Protospacer
 **.************ *******  * .***

16. spacer 2.43|1823779|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 7, identity: 0.781

attaaagaataaattgtattctaaatagttgt--	CRISPR spacer
cttaaagaataaattatattataact--ttatta	Protospacer
 **************.**** *** *  **.*

17. spacer 2.43|1823779|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to HQ634191 (Cyanophage Syn10 genomic sequence) position: , mismatch: 7, identity: 0.781

attaaagaataaattgtattctaaatagttgt	CRISPR spacer
actaaagaatcaattgtattcttaacatcagt	Protospacer
*.******** *********** **.* . **

18. spacer 2.43|1823779|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to DQ149023 (Synechococcus cyanophage syn9, complete genome) position: , mismatch: 7, identity: 0.781

attaaagaataaattgtattctaaatagttgt	CRISPR spacer
actaaagaatcaattgtattcttaacatcagt	Protospacer
*.******** *********** **.* . **

19. spacer 2.43|1823779|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_008296 (Synechococcus phage syn9, complete genome) position: , mismatch: 7, identity: 0.781

attaaagaataaattgtattctaaatagttgt	CRISPR spacer
actaaagaatcaattgtattcttaacatcagt	Protospacer
*.******** *********** **.* . **

20. spacer 3.23|2757624|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MN694297 (Marine virus AFVG_250M922, complete genome) position: , mismatch: 7, identity: 0.781

gtgctgtttgttgatgtcctgctcgacgaggc	CRISPR spacer
gcggttgatgttgatttcctgctcgtcgaggc	Protospacer
*.* *   ******* ********* ******

21. spacer 3.23|2757624|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MT658805 (Gordonia phage Rabbitrun, complete genome) position: , mismatch: 7, identity: 0.781

-gtgctgtttgttgatgtcctgctcgacgaggc	CRISPR spacer
caggccg-ctgttggtgtcatgctcgacgaggc	Protospacer
 . **.* .*****.**** *************

22. spacer 2.14|1822036|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to LC554890 (Ralstonia phage RP13 DNA, nearly complete genome) position: , mismatch: 8, identity: 0.75

taaaaatactgtagtaaacaatacttttagtg	CRISPR spacer
attaactactgtagtaatcaatactttatatg	Protospacer
   ** *********** *********  .**

23. spacer 2.14|1822036|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028874 (Borreliella bavariensis PBi plasmid lp25_cp32-3, complete sequence) position: , mismatch: 8, identity: 0.75

taaaaatac----tgtagtaaacaatacttttagtg	CRISPR spacer
----atttccttttgtagtaaaaaatactttgagtg	Protospacer
    * * *    ********* ******** ****

24. spacer 2.17|1822217|33|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021116 (Rhodobacteraceae bacterium strain G7 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

cagtctggcggcgcattatctggttttatgtat	CRISPR spacer
aattcttgcggcgcatgatctggttttggtgat	Protospacer
 * *** ********* **********.   **

25. spacer 2.24|1822638|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031358 (Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tatctcggctgtgaagaggtcgaatacaccga	CRISPR spacer
cacaaaggctgtgaagaggtcgaagacgccgc	Protospacer
.*.   ****************** **.***

26. spacer 2.35|1823299|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040048 (Acinetobacter baumannii strain VB1190 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atggtgtcatcatcaataataaaaccaaatga	CRISPR spacer
gaattctcatcatcaataaaaaaacaaaatgg	Protospacer
. . * ************* ***** *****.

27. spacer 2.35|1823299|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to CAJCJZ010000002 (Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence) position: , mismatch: 8, identity: 0.75

atggtgtcatcatcaataataaaaccaaatga	CRISPR spacer
aattttaaatcatcaataataacaccaaatgc	Protospacer
*   *   ************** ********

28. spacer 2.35|1823299|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MT119360 (Enterococcus phage nattely, complete genome) position: , mismatch: 8, identity: 0.75

atggtgtcatcatcaataataaaaccaaatga	CRISPR spacer
aattttaaatcatcaataataacaccaaatgc	Protospacer
*   *   ************** ********

29. spacer 2.35|1823299|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007001 (Campylobacter fetus subsp. venerealis cfvi03/293 plasmid pCfviMP2, complete sequence) position: , mismatch: 8, identity: 0.75

atggtgtcatcatcaataataaaaccaaatga	CRISPR spacer
ctagagccatcatctataataaatccaaatat	Protospacer
 *.* *.******* ******** ******.

30. spacer 2.39|1823539|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 8, identity: 0.75

attataataatcgtgattgtctttaaacgcta	CRISPR spacer
atcgggataatcgttgttgtctttaaacggca	Protospacer
**.. .******** .************* .*

31. spacer 2.39|1823539|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 8, identity: 0.75

attataataatcgtgattgtctttaaacgcta	CRISPR spacer
atcgggataatcgttgttgtctttaaacggca	Protospacer
**.. .******** .************* .*

32. spacer 2.39|1823539|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 8, identity: 0.75

attataataatcgtgattgtctttaaacgcta	CRISPR spacer
atcgggataatcgttgttgtctttaaacggca	Protospacer
**.. .******** .************* .*

33. spacer 2.43|1823779|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MF422185 (Bacillus phage BSP10, complete genome) position: , mismatch: 8, identity: 0.75

attaaagaataaattgtattctaaatagttgt	CRISPR spacer
ctgtagcaataaatcgtattctaaaaagtttt	Protospacer
 *  *. *******.********** **** *

34. spacer 2.43|1823779|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_030903 (Bacillus phage SPG24 DNA, contig00001 sequence) position: , mismatch: 8, identity: 0.75

attaaagaataaattgtattctaaatagttgt	CRISPR spacer
ctgtagcaataaatcgtattctaaaaagtttt	Protospacer
 *  *. *******.********** **** *

35. spacer 2.43|1823779|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MG000860 (Bacillus phage BSP9, complete genome) position: , mismatch: 8, identity: 0.75

attaaagaataaattgtattctaaatagttgt	CRISPR spacer
ctgtagcaataaatcgtattctaaaaagtttt	Protospacer
 *  *. *******.********** **** *

36. spacer 2.45|1823899|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017764 (Bacillus subtilis strain 29R7-12 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acgtaaacgagaatatagacaccttcctgatc	CRISPR spacer
cgatagagaagaatataaaaaccttcctgatc	Protospacer
  .**.* .********.* ************

37. spacer 2.45|1823899|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032868 (Bacillus subtilis subsp. subtilis strain N4-2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acgtaaacgagaatatagacaccttcctgatc	CRISPR spacer
cgatagagaagaatataaaaaccttcctgatc	Protospacer
  .**.* .********.* ************

38. spacer 2.45|1823899|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032864 (Bacillus subtilis subsp. subtilis strain N2-2 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acgtaaacgagaatatagacaccttcctgatc	CRISPR spacer
cgatagagaagaatataaaaaccttcctgatc	Protospacer
  .**.* .********.* ************

39. spacer 2.45|1823899|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032866 (Bacillus subtilis subsp. subtilis strain N3-1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acgtaaacgagaatatagacaccttcctgatc	CRISPR spacer
cgatagagaagaatataaaaaccttcctgatc	Protospacer
  .**.* .********.* ************

40. spacer 2.45|1823899|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021893 (Bacillus subtilis subsp. subtilis strain SRCM100333 plasmid pBS333 sequence) position: , mismatch: 8, identity: 0.75

acgtaaacgagaatatagacaccttcctgatc	CRISPR spacer
cgatagagaagaatataaaaaccttcctgatc	Protospacer
  .**.* .********.* ************

41. spacer 2.45|1823899|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041370 (Bacillus sp. M4U3P1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acgtaaacgagaatatagacaccttcctgatc	CRISPR spacer
cgatagagaagaatataaaaaccttcctgatc	Protospacer
  .**.* .********.* ************

42. spacer 2.45|1823899|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020024 (Bacillus subtilis strain ATCC 21228 plasmid pLDW-15, complete sequence) position: , mismatch: 8, identity: 0.75

acgtaaacgagaatatagacaccttcctgatc	CRISPR spacer
cgatagagaagaatataaaaaccttcctgatc	Protospacer
  .**.* .********.* ************

43. spacer 2.45|1823899|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032862 (Bacillus subtilis subsp. subtilis strain N1-1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acgtaaacgagaatatagacaccttcctgatc	CRISPR spacer
cgatagagaagaatataaaaaccttcctgatc	Protospacer
  .**.* .********.* ************

44. spacer 2.45|1823899|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018185 (Bacillus subtilis strain KH2 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

acgtaaacgagaatatagacaccttcctgatc	CRISPR spacer
cgatagagaagaatataaaaaccttcctgatc	Protospacer
  .**.* .********.* ************

45. spacer 2.45|1823899|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_015148 (Bacillus subtilis subsp. natto plasmid pLS20 DNA, complete sequence, strain: IFO 3335) position: , mismatch: 8, identity: 0.75

acgtaaacgagaatatagacaccttcctgatc	CRISPR spacer
cgatagagaagaatataaaaaccttcctgatc	Protospacer
  .**.* .********.* ************

46. spacer 2.45|1823899|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014473 (Bacillus subtilis subsp. natto strain CGMCC 2108 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

acgtaaacgagaatatagacaccttcctgatc	CRISPR spacer
cgatagagaagaatataaaaaccttcctgatc	Protospacer
  .**.* .********.* ************

47. spacer 2.46|1823959|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to KM589504 (Microviridae Fen2266_11, complete genome) position: , mismatch: 8, identity: 0.75

gctaatcatgctgctaatggtgccgcgcgaga	CRISPR spacer
gctaataatgctgctaatcgtgcttttcaagt	Protospacer
****** *********** ****. . *.**

48. spacer 3.1|2756304|32|NC_010465|CRISPRCasFinder,CRT matches to NZ_CP018634 (Salmonella enterica subsp. enterica serovar Enteritidis strain 49-2444 plasmid pSE49-2444, complete sequence) position: , mismatch: 8, identity: 0.75

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcggcatccccctggccgtccagggtgtaa	Protospacer
*  .  *.**.************** ******

49. spacer 3.1|2756304|32|NC_010465|CRISPRCasFinder,CRT matches to NZ_CP045959 (Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence) position: , mismatch: 8, identity: 0.75

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcagcatccccctggccgtccagggtgtaa	Protospacer
*  .  *.**.************** ******

50. spacer 3.9|2756784|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MN871511 (UNVERIFIED: Vibrio phage vspsw1, complete genome) position: , mismatch: 8, identity: 0.75

gttgtttttccattaatatcgacaactttttt	CRISPR spacer
acagtatttccatttatatcgacaactgtatc	Protospacer
.. ** ******** ************ * *.

51. spacer 3.9|2756784|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MN871505 (UNVERIFIED: Vibrio phage ValDsh2, complete genome) position: , mismatch: 8, identity: 0.75

gttgtttttccattaatatcgacaactttttt	CRISPR spacer
acagtatttccatttatatcgacaactgtatc	Protospacer
.. ** ******** ************ * *.

52. spacer 3.9|2756784|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MT442039 (Vibrio phage vB_ValS_X1, partial genome) position: , mismatch: 8, identity: 0.75

gttgtttttccattaatatcgacaactttttt	CRISPR spacer
acagtatttccatttatatcgacaactgtatc	Protospacer
.. ** ******** ************ * *.

53. spacer 3.9|2756784|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MN871510 (UNVERIFIED: Vibrio phage valsw3, complete genome) position: , mismatch: 8, identity: 0.75

gttgtttttccattaatatcgacaactttttt	CRISPR spacer
acagtatttccatttatatcgacaactgtatc	Protospacer
.. ** ******** ************ * *.

54. spacer 3.9|2756784|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MH925094 (UNVERIFIED: Vibrio phage VspSw_1, complete genome) position: , mismatch: 8, identity: 0.75

gttgtttttccattaatatcgacaactttttt	CRISPR spacer
acagtatttccatttatatcgacaactgtatc	Protospacer
.. ** ******** ************ * *.

55. spacer 3.9|2756784|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to CP024913 (Cyanobacterium sp. HL-69 plasmid pCHL69-1, complete sequence) position: , mismatch: 8, identity: 0.75

gttgtttttccattaatatcgacaactttttt	CRISPR spacer
cttatttttccattaatatcaacattgtttgg	Protospacer
 **.****************.*** . ***

56. spacer 3.9|2756784|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_019515 (Bacillus phage BCD7, complete genome) position: , mismatch: 8, identity: 0.75

gttgtttttccattaatatcgacaactttttt	CRISPR spacer
cctgcacttccttttatatcgacaacttttat	Protospacer
 .**. .**** ** *************** *

57. spacer 3.10|2756844|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to KY593455 (Yersinia phage fHe-Yen9-01, complete genome) position: , mismatch: 8, identity: 0.75

ccatctatttgataaattccagattcatttct	CRISPR spacer
ttatcgatttgataaattacagatttaaagct	Protospacer
..*** ************ ******.*   **

58. spacer 3.22|2757564|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to AP014715 (Edwardsiella phage PEi26 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

atttacgctgagattctgcggcggcgcggtaa	CRISPR spacer
gtttacgctgagattcggaggcggccttctta	Protospacer
.*************** * ****** .  * *

59. spacer 3.22|2757564|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_028683 (Edwardsiella phage PEi20 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

atttacgctgagattctgcggcggcgcggtaa	CRISPR spacer
gtttacgctgagattcggaggcggccttctta	Protospacer
.*************** * ****** .  * *

60. spacer 3.22|2757564|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MN087708 (Edwardsiella phage vB_EtaM-IME523, complete genome) position: , mismatch: 8, identity: 0.75

atttacgctgagattctgcggcggcgcggtaa	CRISPR spacer
gtttacgctgagattctgtagcggccttctta	Protospacer
.*****************..***** .  * *

61. spacer 3.23|2757624|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021082 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI1, complete sequence) position: , mismatch: 8, identity: 0.75

----gtgctgtttgttgatgtcctgctcgacgaggc	CRISPR spacer
cagggcgc----ggttgacggcctgctcgacgaggc	Protospacer
    *.**     *****.* ***************

62. spacer 2.2|1821437|30|NC_010465|PILER-CR matches to AP013497 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S35-C79) position: , mismatch: 9, identity: 0.7

aattattactgttgataaacttatcgatac	CRISPR spacer
ctggtctactgctgataaacttatagataa	Protospacer
     .*****.************ ****

63. spacer 2.2|1821437|30|NC_010465|PILER-CR matches to AP013776 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S36-C73, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

aattattactgttgataaacttatcgatac	CRISPR spacer
ctggtctactgctgataaacttatagataa	Protospacer
     .*****.************ ****

64. spacer 2.2|1821437|30|NC_010465|PILER-CR matches to AP013496 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S28-C61) position: , mismatch: 9, identity: 0.7

aattattactgttgataaacttatcgatac	CRISPR spacer
ctggtctactgctgataaacttatagataa	Protospacer
     .*****.************ ****

65. spacer 2.2|1821437|30|NC_010465|PILER-CR matches to AP013775 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S26-C73, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

aattattactgttgataaacttatcgatac	CRISPR spacer
ctggtctactgctgataaacttatagataa	Protospacer
     .*****.************ ****

66. spacer 2.2|1821437|30|NC_010465|PILER-CR matches to AP013499 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S39-C84) position: , mismatch: 9, identity: 0.7

aattattactgttgataaacttatcgatac	CRISPR spacer
ctggtctactgctgataaacttatagataa	Protospacer
     .*****.************ ****

67. spacer 2.2|1821437|30|NC_010465|PILER-CR matches to AP013498 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S38-C76) position: , mismatch: 9, identity: 0.7

aattattactgttgataaacttatcgatac	CRISPR spacer
ctggtctactgctgataaacttatagataa	Protospacer
     .*****.************ ****

68. spacer 2.23|1822578|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024658 (Bacillus cereus strain MLY1 plasmid pMLY1.3, complete sequence) position: , mismatch: 9, identity: 0.719

gtgtagacgcttatgctcaggttctactaata	CRISPR spacer
tagttttaccttatactctggttctactaata	Protospacer
  **     *****.*** *************

69. spacer 2.33|1823179|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MG945697 (UNVERIFIED: Microviridae sp. isolate 1609-1801, complete genome) position: , mismatch: 9, identity: 0.719

gttttaatgtgagaaatagagcgcatccacgc	CRISPR spacer
aagtaaatgtgagaaatacagcacatccgcct	Protospacer
.  * ************* ***.*****.* .

70. spacer 2.33|1823179|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MG945692 (UNVERIFIED: Microviridae sp. isolate 1534-1801, complete genome) position: , mismatch: 9, identity: 0.719

gttttaatgtgagaaatagagcgcatccacgc	CRISPR spacer
aggtaaatgtgagaaatacagcacatccgcct	Protospacer
.  * ************* ***.*****.* .

71. spacer 2.33|1823179|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MG945734 (UNVERIFIED: Microviridae sp. isolate 2370-1801, complete genome) position: , mismatch: 9, identity: 0.719

gttttaatgtgagaaatagagcgcatccacgc	CRISPR spacer
aggtaaatgtgagaaatacagcacatccgcct	Protospacer
.  * ************* ***.*****.* .

72. spacer 2.33|1823179|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MG945482 (UNVERIFIED: Microviridae sp. isolate 838-1801, complete genome) position: , mismatch: 9, identity: 0.719

gttttaatgtgagaaatagagcgcatccacgc	CRISPR spacer
aggtaaatgtgagaaatacagcacatccgcct	Protospacer
.  * ************* ***.*****.* .

73. spacer 2.33|1823179|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MG945384 (UNVERIFIED: Microviridae sp. isolate 3176-1801, complete genome) position: , mismatch: 9, identity: 0.719

gttttaatgtgagaaatagagcgcatccacgc	CRISPR spacer
aggtaaatgtgagaaatacagcacatccgcct	Protospacer
.  * ************* ***.*****.* .

74. spacer 2.33|1823179|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MG883720 (Microviridae sp. isolate Pig101, complete genome) position: , mismatch: 9, identity: 0.719

gttttaatgtgagaaatagagcgcatccacgc	CRISPR spacer
aggtaaatgtgagaaatacagcacatccgcct	Protospacer
.  * ************* ***.*****.* .

75. spacer 2.33|1823179|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MG945698 (UNVERIFIED: Microviridae sp. isolate 1684-1801, complete genome) position: , mismatch: 9, identity: 0.719

gttttaatgtgagaaatagagcgcatccacgc	CRISPR spacer
aggtaaatgtgagaaatacagcacatccgcct	Protospacer
.  * ************* ***.*****.* .

76. spacer 2.35|1823299|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011408 (Vibrio parahaemolyticus strain FORC_014 plasmid pFORC14, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgtcatcatcaataataaaaccaaatga	CRISPR spacer
atggtgtgatcatcaataatcaaaacgtcgct	Protospacer
******* ************ *** *.

77. spacer 2.35|1823299|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MH412654 (Synechococcus phage S-T4, complete genome) position: , mismatch: 9, identity: 0.719

atggtgtcatcatcaataataaaaccaaatga	CRISPR spacer
gtcaagttatcatcattaataaaaccaaaaac	Protospacer
.* . **.******* ************* .

78. spacer 2.43|1823779|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_011248 (Borrelia duttonii Ly plasmid pl35, complete sequence) position: , mismatch: 9, identity: 0.719

attaaagaataaattgtattctaaatagttgt	CRISPR spacer
aattaagaaaaaattgtattttaaataaagtg	Protospacer
* * ***** **********.******.

79. spacer 2.43|1823779|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 9, identity: 0.719

attaaagaataaattgtattctaaatagttgt	CRISPR spacer
aaagtataatatattgtattttaaatagtttg	Protospacer
*  . * **** ********.*********

80. spacer 3.1|2756304|32|NC_010465|CRISPRCasFinder,CRT matches to NZ_CP030220 (Salmonella enterica strain SA20021456 plasmid pSA20021456.1, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcggtatcgccctgaccgtccagcgtgtaa	Protospacer
*  .  ..** *****.***************

81. spacer 3.1|2756304|32|NC_010465|CRISPRCasFinder,CRT matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcagtatcgccctgaccgtccagcgtgtaa	Protospacer
*  .  ..** *****.***************

82. spacer 3.1|2756304|32|NC_010465|CRISPRCasFinder,CRT matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcagtatcgccctgaccgtccagcgtgtaa	Protospacer
*  .  ..** *****.***************

83. spacer 3.1|2756304|32|NC_010465|CRISPRCasFinder,CRT matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcagtatcgccctgaccgtccagcgtgtaa	Protospacer
*  .  ..** *****.***************

84. spacer 3.1|2756304|32|NC_010465|CRISPRCasFinder,CRT matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
acgcagtatcgccctgaccgtccagcgtgtaa	Protospacer
*  .  ..** *****.***************

85. spacer 3.1|2756304|32|NC_010465|CRISPRCasFinder,CRT matches to NZ_CP027765 (Escherichia coli strain 2015C-3125 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

agctctcgtctccctggccgtccagcgtgtaa	CRISPR spacer
aggcggtatctccctggccatccagggtgtag	Protospacer
** .  ..***********.***** *****.

86. spacer 3.8|2756724|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MK448839 (Streptococcus phage Javan102, complete genome) position: , mismatch: 9, identity: 0.719

ttggagttaataagtttgatatgtatacgatt	CRISPR spacer
aaggagttagtaagtttgatatttatcttgat	Protospacer
  *******.************ *** . . *

87. spacer 3.8|2756724|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MK448667 (Streptococcus phage Javan105, complete genome) position: , mismatch: 9, identity: 0.719

ttggagttaataagtttgatatgtatacgatt	CRISPR spacer
aaggagttagtaagtttgatatttatcttgat	Protospacer
  *******.************ *** . . *

88. spacer 3.8|2756724|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MK448843 (Streptococcus phage Javan112, complete genome) position: , mismatch: 9, identity: 0.719

ttggagttaataagtttgatatgtatacgatt	CRISPR spacer
aaggagttagtaagtttgatatttatcttgat	Protospacer
  *******.************ *** . . *

89. spacer 3.8|2756724|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MK448841 (Streptococcus phage Javan108, complete genome) position: , mismatch: 9, identity: 0.719

ttggagttaataagtttgatatgtatacgatt	CRISPR spacer
aaggagttagtaagtttgatatttatcttgat	Protospacer
  *******.************ *** . . *

90. spacer 3.9|2756784|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gttgtttttccattaatatcgacaactttttt	CRISPR spacer
aatgttttaccattaacatcgacaatgattgc	Protospacer
. ****** *******.********.  ** .

91. spacer 3.10|2756844|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MN693429 (Marine virus AFVG_25M409, complete genome) position: , mismatch: 9, identity: 0.719

ccatctatttgataaattccagattcatttct	CRISPR spacer
tcatccatttgataaataccagatatagccat	Protospacer
.****.*********** ****** .* .. *

92. spacer 3.11|2756904|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MH909329 (Leclercia adecarboxylata strain 150707804 plasmid p707804-3FII, complete sequence) position: , mismatch: 9, identity: 0.719

aaacatcagcggtcccgctggatgaatatggt	CRISPR spacer
tgacagcagcgatcccgctggatgaggaattt	Protospacer
 .*** *****.*************. *   *

93. spacer 3.13|2757024|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_015383 (Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence) position: , mismatch: 9, identity: 0.719

tgtcatggacgcagcgaaggcggagcaagcat	CRISPR spacer
gatcatggacgcatcgaagtcggagcctacgc	Protospacer
 .*********** ***** ******  .*..

94. spacer 3.13|2757024|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_015383 (Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence) position: , mismatch: 9, identity: 0.719

tgtcatggacgcagcgaaggcggagcaagcat	CRISPR spacer
gatcatggacgcatcgaagtcggagcctacgc	Protospacer
 .*********** ***** ******  .*..

95. spacer 3.16|2757204|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to LR135896 (uncultured phage genomic DNA containing rbcL region region) position: , mismatch: 9, identity: 0.719

gatatttcatttggttgtttatctagcttgtc	CRISPR spacer
attatttcatttaattgtttatctagaccata	Protospacer
. **********..************ ...*

96. spacer 3.16|2757204|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MN693157 (Marine virus AFVG_25M322, complete genome) position: , mismatch: 9, identity: 0.719

gatatttcatttggttgtttatctagcttgtc	CRISPR spacer
gatatttcatttagttgtttctcctgtgaggt	Protospacer
************.******* **. *.  * .

97. spacer 3.18|2757324|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MH766655 (Curvibacter phage TJ1, complete genome) position: , mismatch: 9, identity: 0.719

tcttcatgatcggcagagctggtttgttcgat	CRISPR spacer
cattcatgatcggcaaggctggttttgacaag	Protospacer
. *************..********   *.*

98. spacer 3.23|2757624|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 9, identity: 0.719

gtgctgtttgttgatgtcctgctcgacgaggc	CRISPR spacer
cagcgcgttgtggatgttctgctcgacgagca	Protospacer
  **   **** *****.************

99. spacer 3.26|2757805|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_014031 (Bacillus megaterium QM B1551 plasmid pBM600, complete sequence) position: , mismatch: 9, identity: 0.719

accttatttaattggaatgggtggggcttcat	CRISPR spacer
gaaatttttaattggtatgggaggggcttatt	Protospacer
.   * ********* ***** *******  *

100. spacer 3.28|2757925|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 9, identity: 0.719

gagcaatttacattagagctaaaagatattgc	CRISPR spacer
atgacagaaacattagaattaaaagatattgc	Protospacer
. *  *   ********..*************

101. spacer 3.28|2757925|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MK867354 (Synechococcus phage S-SCSM1, complete genome) position: , mismatch: 9, identity: 0.719

gagcaatttacattagagctaaaagatattgc	CRISPR spacer
aaaccatttacattagaggtaaaaaatacatt	Protospacer
.*.* ************* *****.***.  .

102. spacer 2.43|1823779|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KX785326 (Streptococcus suis strain 3366 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

attaaagaataaattgtattctaaatagttgt	CRISPR spacer
tacaaagaataaaatttattctaaatcaacat	Protospacer
  .********** * ********** . ..*

103. spacer 3.3|2756424|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 10, identity: 0.688

gtttttaattttccgtcagtctcacctttaat	CRISPR spacer
ctaaaaaatcttccgtcagtctcaacttttga	Protospacer
 *    ***.************** **** .

104. spacer 3.5|2756544|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MK448796 (Streptococcus phage Javan53, complete genome) position: , mismatch: 10, identity: 0.688

gttatctgtgattgatttatatgatgttaaat	CRISPR spacer
attatctttgattgatttatacgactctgcgc	Protospacer
.****** *************.**. .*. ..

105. spacer 3.10|2756844|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 10, identity: 0.688

ccatctatttgataaattccagattcatttct	CRISPR spacer
ttgagtttttgatcaattccatattcatttgc	Protospacer
...  * ****** ******* ******** .

106. spacer 3.22|2757564|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018077 (Sulfitobacter sp. AM1-D1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atttacgctgagattctgcggcggcgcggtaa	CRISPR spacer
tggcgagctgggattctgcggcggcgcggggg	Protospacer
   .. ****.****************** ..

107. spacer 2.4|1821435|32|NC_010465|CRISPRCasFinder,CRT matches to AP013499 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S39-C84) position: , mismatch: 11, identity: 0.656

aattattactgttgataaacttatcgatactg	CRISPR spacer
ctggtctactgctgataaacttatagataaac	Protospacer
     .*****.************ ****

108. spacer 2.4|1821435|32|NC_010465|CRISPRCasFinder,CRT matches to AP013497 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S35-C79) position: , mismatch: 11, identity: 0.656

aattattactgttgataaacttatcgatactg	CRISPR spacer
ctggtctactgctgataaacttatagataaac	Protospacer
     .*****.************ ****

109. spacer 2.4|1821435|32|NC_010465|CRISPRCasFinder,CRT matches to AP013498 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S38-C76) position: , mismatch: 11, identity: 0.656

aattattactgttgataaacttatcgatactg	CRISPR spacer
ctggtctactgctgataaacttatagataaac	Protospacer
     .*****.************ ****

110. spacer 2.4|1821435|32|NC_010465|CRISPRCasFinder,CRT matches to AP013776 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S36-C73, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 11, identity: 0.656

aattattactgttgataaacttatcgatactg	CRISPR spacer
ctggtctactgctgataaacttatagataaac	Protospacer
     .*****.************ ****

111. spacer 2.4|1821435|32|NC_010465|CRISPRCasFinder,CRT matches to AP013496 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C68A-MedDCM-OCT-S28-C61) position: , mismatch: 11, identity: 0.656

aattattactgttgataaacttatcgatactg	CRISPR spacer
ctggtctactgctgataaacttatagataaac	Protospacer
     .*****.************ ****

112. spacer 2.4|1821435|32|NC_010465|CRISPRCasFinder,CRT matches to AP013775 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C68A-MedDCM-OCT-S26-C73, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 11, identity: 0.656

aattattactgttgataaacttatcgatactg	CRISPR spacer
ctggtctactgctgataaacttatagataaac	Protospacer
     .*****.************ ****

113. spacer 2.24|1822638|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to MG873442 (Salmonella phage SE131, complete genome) position: , mismatch: 11, identity: 0.656

tatctcggctgtgaagaggtcgaatacaccga	CRISPR spacer
gtcaattgctttgcagaggtcgaatacaccac	Protospacer
  .  . *** ** ****************.

114. spacer 2.24|1822638|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_015938 (Salmonella phage 7-11, complete genome) position: , mismatch: 11, identity: 0.656

tatctcggctgtgaagaggtcgaatacaccga	CRISPR spacer
gtcaattgctttgcagaggtcgaatacaccac	Protospacer
  .  . *** ** ****************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

204186 : 255293

Pseudomonas_phage(33.33%)

tail,transposase,integrase,plate,protease

attL 233159:233173|attR 256118:256132

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002216348.1\|204186_205023_-\|protease	rhomboid family intramembrane serine protease GlpG	NA	NA	NA	NA
WP_002218928.1\|205040_205370_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_002208926.1\|205744_208456_-	HTH-type transcriptional regulator MalT	NA	NA	NA	NA
WP_012105894.1\|208773_211179_+	maltodextrin phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	4.0e-13	39.1
WP_012303379.1\|211191_213288_+	4-alpha-glucanotransferase	NA	NA	NA	NA
WP_002208924.1\|213472_214048_-	Fe-S biogenesis protein NfuA	NA	NA	NA	NA
WP_002208923.1\|214107_214809_-	DNA utilization protein GntX	NA	NA	NA	NA
WP_002208922.1\|214895_215672_+	pimeloyl-ACP methyl ester esterase BioH	NA	NA	NA	NA
WP_002208921.1\|215841_216111_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_002208920.1\|216248_216506_-	ferrous iron transporter C	NA	NA	NA	NA
WP_012303380.1\|216541_218857_-	Fe(2+) transporter permease subunit FeoB	NA	NA	NA	NA
WP_002208918.1\|218948_219176_-	ferrous iron transporter A	NA	NA	NA	NA
WP_012303381.1\|219699_222075_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_002208915.1\|222608_223124_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_002208914.1\|223259_223979_+	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	2.7e-29	34.7
WP_002208913.1\|223975_225328_+	two-component system sensor histidine kinase EnvZ	W8CYF6	Bacillus_phage	1.6e-11	24.1
WP_011193240.1\|225666_227286_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	1.6e-138	52.0
WP_012303382.1\|227482_228364_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_002208910.1\|228526_228934_-	ribosome-associated heat shock protein Hsp15	NA	NA	NA	NA
WP_002208909.1\|228962_229643_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_011193239.1\|229786_231934_-	intracellular growth attenuator family protein	NA	NA	NA	NA
WP_002208907.1\|232520_233066_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
233159:233173	attL	NA	NA	NA	NA
WP_012303383.1\|233186_233942_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	9.1e-97	65.1
WP_012303384.1\|234073_234511_-\|tail	tail assembly chaperone	B6SCW7	Bacteriophage	4.0e-12	35.4
WP_112473240.1\|235749_236301_-	DUF2313 domain-containing protein	A0A0M3LQE1	Mannheimia_phage	4.0e-25	34.8
WP_012303387.1\|236315_237377_-\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	1.6e-75	46.0
WP_032466774.1\|237376_237727_-	phage GP46 family protein	A0A2H4JDR8	uncultured_Caudovirales_phage	1.7e-29	62.6
WP_012303389.1\|237781_238432_-\|plate	phage baseplate assembly protein	A0A0M3LPA3	Mannheimia_phage	2.5e-50	48.2
WP_012303390.1\|238421_239645_-\|tail	tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	2.8e-71	36.0
WP_112473238.1\|239628_240930_-	multidrug DMT transporter permease	A0A2H4JGT4	uncultured_Caudovirales_phage	1.4e-41	30.9
WP_012303392.1\|240949_243157_-\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	3.5e-96	41.8
WP_012303395.1\|243594_243792_-	hypothetical protein	NA	NA	NA	NA
WP_012303396.1\|243784_244285_-	DUF1804 family protein	A0A0A1IX73	Pseudomonas_phage	1.3e-51	59.0
WP_012303397.1\|244287_244575_-	hypothetical protein	NA	NA	NA	NA
WP_012303398.1\|244571_244814_-	hypothetical protein	NA	NA	NA	NA
WP_112473237.1\|244810_245350_-	hypothetical protein	A0A2D1GNR2	Pseudomonas_phage	1.5e-24	44.3
WP_012303400.1\|245375_245630_-	hypothetical protein	A0A2D1GNW8	Pseudomonas_phage	1.8e-12	47.6
WP_041176032.1\|245620_246253_-	glycoside hydrolase family 19 protein	F1C5D2	Cronobacter_phage	4.1e-66	61.1
WP_012303402.1\|246350_246620_-	hypothetical protein	NA	NA	NA	NA
WP_032466757.1\|246631_247066_-	hypothetical protein	A0A2D1GNW5	Pseudomonas_phage	3.8e-31	50.7
WP_012303404.1\|247065_247467_-	regulatory protein GemA	A0A0A7DJY7	Pseudomonas_phage	2.3e-22	42.7
WP_112473235.1\|247451_247916_-	hypothetical protein	NA	NA	NA	NA
WP_012303406.1\|247917_248310_-	hypothetical protein	NA	NA	NA	NA
WP_123767121.1\|248302_248515_-	hypothetical protein	NA	NA	NA	NA
WP_012303408.1\|248511_249054_-	hypothetical protein	J9Q748	Salmonella_phage	5.6e-48	52.9
WP_012303409.1\|249043_249286_-	hypothetical protein	NA	NA	NA	NA
WP_012303410.1\|249282_249504_-	hypothetical protein	A0A2D1GNI2	Pseudomonas_phage	9.1e-13	54.5
WP_012303411.1\|249500_250001_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_012303412.1\|250000_250699_-	DUF2786 domain-containing protein	A0A2H4JCP9	uncultured_Caudovirales_phage	1.7e-17	33.5
WP_012303413.1\|250781_250973_-	hypothetical protein	NA	NA	NA	NA
WP_012303414.1\|250974_251613_-	DUF3164 family protein	A4JWM8	Burkholderia_virus	1.6e-62	56.5
WP_012303415.1\|251602_251803_-	hypothetical protein	NA	NA	NA	NA
WP_012303416.1\|251809_252043_-	hypothetical protein	A0A2D1GNI5	Pseudomonas_phage	1.5e-18	55.3
WP_012303417.1\|252061_252952_-	ATPase	A0A2D1GNS0	Pseudomonas_phage	5.9e-79	52.1
WP_112473233.1\|252994_255037_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2D1GNK9	Pseudomonas_phage	3.6e-188	51.7
WP_032898438.1\|255050_255293_-	transcriptional regulator	M1PVU4	Vibrio_phage	1.1e-16	59.4
256118:256132	attR	NA	NA	NA	NA

DBSCAN-SWA_2

963066 : 1063056

Cronobacter_phage(57.63%)

head,tail,tRNA,transposase,terminase,capsid,holin,integrase,portal,protease

attL 1036787:1036804|attR 1047667:1047684

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012104670.1\|963066_963579_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_002209971.1\|963770_964925_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-126	62.1
WP_002209969.1\|966131_968111_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_012303654.1\|968310_968769_+\|transposase	IS200/IS605-like element IS1541B family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_002213775.1\|969022_969481_+\|transposase	IS200/IS605-like element IS1541B family transposase	A0A1S5RHE3	Helicobacter_phage	1.5e-09	33.0
WP_012303655.1\|969794_970547_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_011192968.1\|971020_973015_+	transketolase	NA	NA	NA	NA
WP_002209964.1\|973429_974446_+	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_002209963.1\|974548_975712_+	phosphoglycerate kinase	NA	NA	NA	NA
WP_002209962.1\|975831_976911_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_071820209.1\|976814_977024_-	hypothetical protein	NA	NA	NA	NA
WP_002209961.1\|977348_978218_+	small-conductance mechanosensitive channel MscS	NA	NA	NA	NA
WP_012303656.1\|978463_979081_+	arginine exporter ArgO	NA	NA	NA	NA
WP_011192966.1\|979270_980050_+	oxidative stress defense protein	NA	NA	NA	NA
WP_002209958.1\|980060_980969_-	LysR family transcriptional regulator ArgP	NA	NA	NA	NA
WP_002209957.1\|981310_981967_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_002209956.1\|982273_983515_+	phosphoglycerate dehydrogenase	A0A1V0SBV6	Catovirus	2.1e-98	46.5
WP_011192965.1\|983779_984376_-	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_002209954.1\|984739_985069_-	cell division protein ZapA	NA	NA	NA	NA
WP_002209953.1\|985405_985984_+	YecA family protein	NA	NA	NA	NA
WP_011192964.1\|986071_987385_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
WP_002209951.1\|987521_988700_+	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_002209950.1\|988872_990093_+	FAD-dependent 2-octaprenylphenol hydroxylase	NA	NA	NA	NA
WP_012303660.1\|990813_991911_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_002209948.1\|991979_992366_+	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_002209947.1\|992577_995457_+	aminomethyl-transferring glycine dehydrogenase	E3SN07	Prochlorococcus_phage	1.7e-268	52.3
WP_002209946.1\|995834_996272_+	lipocalin-like domain-containing protein	NA	NA	NA	NA
WP_012303661.1\|997331_999482_+	autotransporter adhesin YapN	NA	NA	NA	NA
WP_072080522.1\|999543_1000689_+	hypothetical protein	NA	NA	NA	NA
WP_012303662.1\|1000890_1001592_+	hemolysin III family protein	NA	NA	NA	NA
WP_002209941.1\|1001883_1002381_+	DUF2165 family protein	NA	NA	NA	NA
WP_002209940.1\|1002453_1003446_-\|tRNA	tRNA-modifying protein YgfZ	NA	NA	NA	NA
WP_002209939.1\|1003762_1004029_+	FAD assembly factor SdhE	NA	NA	NA	NA
WP_002215144.1\|1004009_1004435_+	membrane protein	NA	NA	NA	NA
WP_002209937.1\|1004434_1005133_+	two-component system response regulator CreB	NA	NA	NA	NA
WP_012104678.1\|1005157_1006591_+	two-component system sensor histidine kinase CreC	NA	NA	NA	NA
WP_072084532.1\|1006654_1008133_+	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_002209934.1\|1008217_1008736_-	flavodoxin FldB	NA	NA	NA	NA
WP_041175955.1\|1008806_1009853_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4S6G4	Salmonella_phage	2.4e-103	54.1
WP_012303666.1\|1009882_1010446_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.6e-32	36.0
WP_012303667.1\|1010584_1010815_+	hypothetical protein	NA	NA	NA	NA
WP_041176057.1\|1010841_1011351_+	hypothetical protein	A0A1S6L008	Salmonella_phage	1.8e-43	51.8
WP_012303669.1\|1011360_1011546_+	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_012303670.1\|1011557_1011875_+	hypothetical protein	NA	NA	NA	NA
WP_012303671.1\|1011941_1012814_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L011	Salmonella_phage	9.0e-72	53.1
WP_041175956.1\|1012810_1013080_+	DUF2732 family protein	NA	NA	NA	NA
WP_012303673.1\|1013091_1013364_+	hypothetical protein	A0A218M4I8	Erwinia_phage	2.0e-14	44.3
WP_012303674.1\|1013367_1014372_+	phosphoadenosine phosphosulfate reductase family protein	B7SYG0	Stenotrophomonas_phage	1.8e-63	42.6
WP_012303675.1\|1014368_1016648_+	replication endonuclease	Q858T4	Yersinia_virus	9.4e-238	56.0
WP_041176059.1\|1016667_1017027_+	hypothetical protein	H9C172	Pectobacterium_phage	1.1e-18	42.5
WP_012303677.1\|1017226_1017442_+	hypothetical protein	NA	NA	NA	NA
WP_041175957.1\|1017418_1017739_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	1.0e-33	65.3
WP_112473340.1\|1017735_1018707_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	5.6e-139	69.2
WP_012303680.1\|1018757_1020545_-	hypothetical protein	F1BUM5	Cronobacter_phage	1.1e-236	68.6
WP_012303681.1\|1020711_1021566_+\|capsid	phage capsid scaffolding protein	F1BUM4	Cronobacter_phage	1.3e-67	49.1
WP_012303682.1\|1021620_1022652_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	6.1e-144	75.8
WP_012303683.1\|1022662_1023361_+\|terminase	terminase	F1BUM0	Cronobacter_phage	1.1e-64	52.2
WP_012303684.1\|1023456_1023909_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.3e-39	56.7
WP_012303685.1\|1023905_1024394_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	3.9e-32	43.0
WP_041175959.1\|1024393_1025068_+	phage protein	F1BUL6	Cronobacter_phage	5.3e-80	67.3
WP_012303687.1\|1025094_1026234_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	4.0e-136	65.7
WP_012303688.1\|1026230_1026683_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	2.4e-44	59.5
WP_012303689.1\|1026692_1026983_+\|holin	holin	Q6K1I2	Salmonella_virus	2.2e-14	52.8
WP_024063639.1\|1026979_1027321_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	1.5e-43	82.2
WP_012303691.1\|1027320_1027662_+	hypothetical protein	F1BUL2	Cronobacter_phage	6.3e-13	40.9
WP_012303692.1\|1027811_1028078_+	hypothetical protein	A5X9I7	Aeromonas_virus	1.0e-18	54.9
WP_012303693.1\|1028265_1030242_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	3.5e-172	48.5
WP_012303694.1\|1030241_1030574_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	1.5e-35	68.3
WP_012303695.1\|1030566_1031751_+	hypothetical protein	F1BUK6	Cronobacter_phage	2.3e-150	65.7
WP_012303696.1\|1031743_1032379_+	hypothetical protein	F1BUK5	Cronobacter_phage	9.2e-58	57.5
WP_012303697.1\|1032389_1034159_+\|tail	tail fiber protein	F1BUK3	Cronobacter_phage	2.2e-69	47.5
WP_012303698.1\|1034169_1034598_+\|tail	tail assembly protein	F1BUK2	Cronobacter_phage	1.5e-08	45.3
WP_012303699.1\|1034587_1035319_+	hypothetical protein	F1BUK1	Cronobacter_phage	1.7e-39	44.6
WP_012303700.1\|1035284_1035833_+	hypothetical protein	F1BUJ9	Cronobacter_phage	6.3e-55	63.7
WP_012303701.1\|1035829_1037485_+	hypothetical protein	F1BUJ7	Cronobacter_phage	4.1e-166	52.8
1036787:1036804	attL	NA	NA	NA	NA
WP_012303702.1\|1037660_1037858_+	hypothetical protein	NA	NA	NA	NA
WP_002209933.1\|1038280_1039180_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	8.5e-33	29.7
WP_002209932.1\|1039210_1039927_+	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA
WP_012303703.1\|1039933_1041667_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.2e-64	29.8
WP_002228062.1\|1041845_1042943_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	5.4e-05	39.0
WP_002209930.1\|1042953_1044471_+\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.1e-85	37.0
WP_011192954.1\|1044903_1046118_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	3.7e-132	58.8
WP_012303704.1\|1046940_1048638_-	hypothetical protein	F1BUJ7	Cronobacter_phage	2.4e-129	48.9
1047667:1047684	attR	NA	NA	NA	NA
WP_112473342.1\|1048634_1049180_-	hypothetical protein	F1BUJ9	Cronobacter_phage	8.5e-36	51.1
WP_012303706.1\|1049181_1049892_-	hypothetical protein	Q94MX8	Haemophilus_virus	4.2e-11	28.1
WP_012303707.1\|1049888_1050407_-\|tail	tail assembly chaperone	A9DEL3	Yersinia_phage	8.3e-41	50.6
WP_012303708.1\|1050406_1052002_-\|tail	phage tail protein	F1BUK3	Cronobacter_phage	1.8e-54	40.2
WP_011192948.1\|1052011_1052635_-	hypothetical protein	F1BUK5	Cronobacter_phage	1.2e-57	57.9
WP_012303709.1\|1052627_1053812_-	hypothetical protein	F1BUK6	Cronobacter_phage	3.0e-134	59.0
WP_011192946.1\|1053808_1054138_-	DUF2590 family protein	Q94MY3	Haemophilus_virus	4.6e-29	60.4
WP_012303712.1\|1054582_1055749_-	DUF2586 family protein	F1BUL5	Cronobacter_phage	1.1e-101	52.6
WP_012303713.1\|1055745_1056447_-	hypothetical protein	F1BUL6	Cronobacter_phage	3.3e-40	43.8
WP_012303714.1\|1056406_1056913_-	hypothetical protein	F1BUL7	Cronobacter_phage	2.7e-20	38.9
WP_012303715.1\|1056909_1057362_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.8e-37	52.7
WP_012303716.1\|1057481_1058225_-\|terminase	terminase	F1BUM0	Cronobacter_phage	1.4e-65	53.6
WP_012303717.1\|1058242_1059415_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	2.0e-82	46.7
WP_012303718.1\|1059497_1060433_-\|capsid	phage capsid scaffolding protein	A5X9H4	Aeromonas_virus	3.5e-37	54.3
WP_012303719.1\|1060610_1062704_+\|terminase	terminase	Q94MZ6	Haemophilus_virus	2.0e-170	49.7
WP_123767123.1\|1062720_1063056_+	hypothetical protein	F1BUM7	Cronobacter_phage	2.9e-34	67.4

DBSCAN-SWA_3

1331574 : 1371200

Burkholderia_phage(35.14%)

holin,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012303784.1\|1331574_1332966_-	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	2.0e-198	70.6
WP_041176066.1\|1333012_1333750_-	DNA-binding protein	K7P6K2	Enterobacteria_phage	1.5e-32	48.9
WP_012303786.1\|1333814_1333997_-	hypothetical protein	NA	NA	NA	NA
WP_012303787.1\|1334123_1334435_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_012303788.1\|1334437_1334575_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_012303789.1\|1334571_1334841_-	VRR-NUC domain-containing protein	Q3LZN4	Bacteriophage	3.4e-30	71.9
WP_012303790.1\|1334824_1335055_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_012303791.1\|1335059_1337141_-	DNA polymerase	Q775A3	Bordetella_phage	3.1e-264	65.1
WP_012303792.1\|1337237_1338017_-	DUF2303 family protein	A0A291AUR3	Sinorhizobium_phage	2.5e-20	31.3
WP_012303793.1\|1338074_1338452_-	hypothetical protein	A0A142K8T9	Gordonia_phage	4.4e-07	45.7
WP_012303794.1\|1338504_1339053_-	DUF2815 family protein	Q3LZQ2	Bacteriophage	1.1e-51	56.3
WP_012303795.1\|1339065_1340376_-	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	2.3e-127	54.4
WP_012303796.1\|1340378_1341113_-	hypothetical protein	NA	NA	NA	NA
WP_012303797.1\|1341571_1342201_-	helix-turn-helix domain-containing protein	A0A0M3LSL8	Mannheimia_phage	2.1e-38	42.2
WP_012303798.1\|1342346_1342562_+	helix-turn-helix transcriptional regulator	A0A220NRR8	Escherichia_phage	7.4e-20	64.8
WP_012303799.1\|1342565_1344743_+	virulence-associated E family protein	B6SCU2	Bacteriophage	1.4e-105	32.0
WP_012303800.1\|1345021_1345234_+	hypothetical protein	NA	NA	NA	NA
WP_012303801.1\|1345315_1345741_+	hypothetical protein	B6SCY2	Bacteriophage	9.6e-19	38.6
WP_012303802.1\|1346112_1346493_+	hypothetical protein	NA	NA	NA	NA
WP_012303803.1\|1346755_1347187_-	hypothetical protein	NA	NA	NA	NA
WP_012303804.1\|1347391_1347724_+\|holin	phage holin, lambda family	Q2A0C6	Sodalis_phage	7.0e-17	41.0
WP_041176069.1\|1347716_1348106_+	M15 family metallopeptidase	A0A060DAL8	Salmonella_phage	2.6e-55	78.0
WP_012303806.1\|1348102_1348480_+	exotoxin	B6SD18	Bacteriophage	2.8e-06	33.3
WP_012303807.1\|1348699_1349251_+\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	3.1e-54	61.3
WP_012303808.1\|1349274_1349634_-	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.9e-12	41.7
WP_041175966.1\|1349685_1349946_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	3.6e-08	40.7
WP_012303809.1\|1350089_1351694_+	hypothetical protein	A0A0M5M1R6	Salmonella_phage	1.8e-235	71.6
WP_123772596.1\|1351943_1353485_+	DUF1073 domain-containing protein	Q6IWU2	Burkholderia_phage	2.2e-113	44.6
WP_042593175.1\|1353522_1354323_+\|head	head morphogenesis protein SPP1	Q6IWU3	Burkholderia_phage	1.6e-51	41.1
WP_080513663.1\|1354309_1355464_+	DUF2213 domain-containing protein	Q6IWU4	Burkholderia_phage	2.5e-53	42.1
WP_012303813.1\|1355463_1355955_+	hypothetical protein	A1Z022	Burkholderia_virus	7.7e-12	30.0
WP_012303814.1\|1355968_1357102_+	DUF2184 domain-containing protein	I6ZXX2	Escherichia_phage	1.5e-90	48.4
WP_155115697.1\|1357130_1357529_+	hypothetical protein	NA	NA	NA	NA
WP_012303816.1\|1357538_1357970_+	DUF4054 domain-containing protein	B7VFH0	Pseudomonas_phage	9.1e-25	41.9
WP_012303817.1\|1357969_1358467_+	hypothetical protein	A0A088C495	Shewanella_sp._phage	1.5e-15	33.0
WP_012303818.1\|1358466_1358850_+	hypothetical protein	Q6IWV0	Burkholderia_phage	1.9e-13	38.1
WP_012303819.1\|1358839_1359379_+	hypothetical protein	NA	NA	NA	NA
WP_012303820.1\|1359391_1360906_+	DUF3383 family protein	I7B2P4	Escherichia_phage	4.5e-95	40.9
WP_012303821.1\|1360917_1361358_+	hypothetical protein	A0A0F6SJB3	Pseudomonas_phage	2.0e-35	50.0
WP_012303822.1\|1361357_1361813_+	hypothetical protein	Q6IWV4	Burkholderia_phage	6.6e-34	54.7
WP_012303823.1\|1361898_1363470_+	hypothetical protein	Q4L1H3	Burkholderia_phage	4.8e-31	29.1
WP_012303824.1\|1363469_1363979_+	hypothetical protein	NA	NA	NA	NA
WP_012303825.1\|1363980_1364283_+	hypothetical protein	NA	NA	NA	NA
WP_012303826.1\|1364286_1365126_+	hypothetical protein	Q6IWQ0	Burkholderia_phage	1.3e-51	41.6
WP_012303827.1\|1365107_1365785_+	hypothetical protein	Q6IWQ1	Burkholderia_phage	1.1e-40	43.2
WP_012303828.1\|1365781_1366141_+	hypothetical protein	Q6IWQ2	Burkholderia_phage	5.6e-20	47.8
WP_012303829.1\|1366124_1367324_+	hypothetical protein	Q6IWQ3	Burkholderia_phage	2.3e-81	46.0
WP_012303830.1\|1367389_1369201_+	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	5.3e-34	37.2
WP_012303831.1\|1369204_1369426_+	hypothetical protein	NA	NA	NA	NA
WP_012303832.1\|1369418_1371200_+	hypothetical protein	H9C1B7	Pectobacterium_phage	3.5e-195	59.6

DBSCAN-SWA_4

1966772 : 2007969

Moraxella_phage(16.67%)

protease,coat,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011192561.1\|1966772_1967762_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_012304005.1\|1967967_1970415_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_002210856.1\|1970517_1971270_-	molecular chaperone	NA	NA	NA	NA
WP_012304006.1\|1971300_1971858_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002216613.1\|1971878_1972409_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_002210852.1\|1972414_1972969_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_012304007.1\|1973449_1976080_-	PqiB family protein	NA	NA	NA	NA
WP_012105007.1\|1976048_1977296_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_002210850.1\|1977527_1978025_+	GAF domain-containing protein	NA	NA	NA	NA
WP_002210849.1\|1978120_1978834_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_011192556.1\|1978853_1980932_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	4.0e-86	34.8
WP_002210847.1\|1981387_1982269_+\|protease	protease HtpX	NA	NA	NA	NA
WP_012105009.1\|1982927_1983470_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_012304009.1\|1983605_1984385_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_002210844.1\|1984466_1987079_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_012304010.1\|1987075_1988239_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_002210843.1\|1988235_1989039_+	molecular chaperone	NA	NA	NA	NA
WP_002210842.1\|1989092_1990460_-	MFS transporter	NA	NA	NA	NA
WP_011192552.1\|1990826_1991993_+	oligogalacturonate lyase	NA	NA	NA	NA
WP_002210840.1\|1992179_1992971_+	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_012304011.1\|1993337_1994189_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	1.7e-11	28.8
WP_072080401.1\|1994402_1995800_-	L-cystine transporter	NA	NA	NA	NA
WP_002210837.1\|1995997_1996546_-	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	4.0e-09	32.9
WP_002210836.1\|1997043_1997754_-	porin	NA	NA	NA	NA
WP_002210835.1\|1998051_1999344_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002210834.1\|1999359_2000487_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.6e-12	26.5
WP_002210833.1\|2000500_2001421_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_002210832.1\|2001413_2002304_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_012304012.1\|2002344_2004012_-	pectate disaccharide-lyase	NA	NA	NA	NA
WP_002210830.1\|2004356_2005118_-	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-20	32.9
WP_012105015.1\|2005209_2006046_-	5-dehydro-4-deoxy-D-glucuronate isomerase	NA	NA	NA	NA
WP_012105016.1\|2006381_2006714_+	cupin domain-containing protein	NA	NA	NA	NA
WP_012304013.1\|2006760_2007969_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8

DBSCAN-SWA_5

2538244 : 2586852

Salmonella_phage(44.19%)

lysis,head,tail,capsid,holin,integrase,plate,portal,transposase

attL 2552877:2552936|attR 2587005:2587127

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002215419.1\|2538244_2538349_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012304154.1\|2539026_2539461_+	hypothetical protein	NA	NA	NA	NA
WP_012304155.1\|2539472_2540042_+	hypothetical protein	NA	NA	NA	NA
WP_012304157.1\|2541705_2542782_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_002213209.1\|2542847_2543138_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	1.8e-05	39.4
WP_012304158.1\|2543139_2543391_-	BrnT family toxin	NA	NA	NA	NA
WP_012304159.1\|2543421_2543781_+\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	8.9e-18	62.5
WP_012304160.1\|2543777_2544077_+	lysozyme	A0A218M4K8	Erwinia_phage	2.6e-23	64.9
WP_002215413.1\|2544093_2544381_+	hypothetical protein	NA	NA	NA	NA
WP_012304161.1\|2544817_2545336_+	DUF2778 domain-containing protein	NA	NA	NA	NA
WP_002227958.1\|2545340_2545595_+	hypothetical protein	NA	NA	NA	NA
WP_012304162.1\|2545759_2546929_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	5.6e-178	79.2
WP_012304163.1\|2546940_2547456_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	8.5e-62	66.9
WP_011192297.1\|2547509_2547857_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.6e-18	51.6
WP_071819140.1\|2547871_2547991_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_012304164.1\|2547983_2550899_+\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	7.5e-155	52.3
WP_012304165.1\|2550910_2551375_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-44	56.2
WP_012304166.1\|2551371_2552466_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	2.1e-126	65.2
WP_012105206.1\|2552540_2552756_+	phage transcriptional activator, Ogr/Delta	S4TNZ3	Salmonella_phage	1.1e-18	60.6
2552877:2552936	attL	NA	NA	NA	NA
WP_012304167.1\|2553106_2554114_-\|integrase	tyrosine-type recombinase/integrase	P79671	Haemophilus_phage	3.4e-107	59.3
WP_012304168.1\|2554121_2554634_-	hypothetical protein	NA	NA	NA	NA
WP_012304169.1\|2554695_2555334_-	hypothetical protein	NA	NA	NA	NA
WP_012304170.1\|2555351_2555744_-	transcriptional regulator	A4JWN8	Burkholderia_virus	3.2e-21	47.2
WP_012304171.1\|2555822_2556014_+	hypothetical protein	NA	NA	NA	NA
WP_012304172.1\|2556026_2556230_+	hypothetical protein	U3PFJ1	Vibrio_phage	9.8e-06	41.1
WP_012304173.1\|2556241_2556448_+	hypothetical protein	NA	NA	NA	NA
WP_012304174.1\|2556444_2556759_+	hypothetical protein	NA	NA	NA	NA
WP_012304176.1\|2556900_2557161_+	hypothetical protein	NA	NA	NA	NA
WP_012304177.1\|2557191_2557497_+	hypothetical protein	NA	NA	NA	NA
WP_012304178.1\|2557579_2558341_+	hypothetical protein	K7ZRM8	Xanthomonas_citri_phage	1.9e-09	49.3
WP_012304179.1\|2558397_2559051_+	3'-5' exonuclease	A0A1D9C9N8	Salinivibrio_phage	1.5e-55	61.2
WP_012304180.1\|2559047_2559866_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L011	Salmonella_phage	1.1e-76	55.9
WP_012304181.1\|2559862_2560726_+	DNA cytosine methyltransferase	W0LM09	Edwardsiella_phage	8.0e-105	59.7
WP_012304182.1\|2560722_2563278_+	replication endonuclease	E5G6L9	Salmonella_phage	3.8e-126	37.4
WP_012304183.1\|2563258_2563489_+	hypothetical protein	NA	NA	NA	NA
WP_012304184.1\|2563485_2563830_+	hypothetical protein	NA	NA	NA	NA
WP_012304185.1\|2564512_2565544_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.5e-131	65.8
WP_012304186.1\|2565540_2566266_-	hypothetical protein	F1BUR2	Erwinia_phage	2.1e-26	31.8
WP_011192317.1\|2566265_2568029_-	oxidoreductase	A0A1S6KZW3	Salmonella_phage	3.1e-228	63.6
WP_012304187.1\|2568199_2569015_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	9.6e-76	71.1
WP_012304188.1\|2569051_2570107_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	8.5e-125	63.0
WP_011192314.1\|2570113_2570767_+	hypothetical protein	F1BUQ7	Erwinia_phage	1.7e-43	46.8
WP_011192313.1\|2571000_2571492_+\|head	head completion/stabilization protein	A0A1S5NNA6	Burkholderia_phage	7.9e-33	48.4
WP_011192312.1\|2571491_2571695_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.8e-23	70.1
WP_011192311.1\|2571724_2572111_+\|holin	holin	NA	NA	NA	NA
WP_012304189.1\|2572097_2572493_+	M15 family metallopeptidase	A9DET4	Yersinia_phage	1.2e-47	71.0
WP_012304190.1\|2572497_2572920_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	4.9e-23	48.6
WP_072083431.1\|2572807_2573032_+	hypothetical protein	NA	NA	NA	NA
WP_011192308.1\|2573018_2573486_+\|tail	phage tail protein	F1BUP9	Erwinia_phage	1.8e-42	57.2
WP_012304191.1\|2573482_2573929_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	3.4e-35	51.4
WP_012304193.1\|2574260_2574962_+	hypothetical protein	NA	NA	NA	NA
WP_112473311.1\|2575229_2575928_+\|plate	phage baseplate assembly protein V	O80314	Escherichia_phage	5.0e-65	62.0
WP_011192304.1\|2575924_2576278_+\|plate	baseplate assembly protein	A0A218M4K8	Erwinia_phage	2.4e-31	59.3
WP_011192303.1\|2576280_2577189_+\|plate	baseplate assembly protein	F1BUP3	Erwinia_phage	1.3e-118	73.2
WP_011192302.1\|2577181_2577790_+\|tail	phage tail protein I	F1BUP2	Erwinia_phage	1.7e-85	75.0
WP_012304196.1\|2577786_2579226_+	hypothetical protein	F1BUP1	Erwinia_phage	3.8e-75	77.8
WP_012304197.1\|2579236_2579716_+\|tail	phage tail protein	F1BUP0	Erwinia_phage	2.0e-28	41.9
WP_012304198.1\|2579849_2581025_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.9e-179	79.3
WP_012105203.1\|2581036_2581552_+\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.9e-62	67.4
WP_011192297.1\|2581605_2581953_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.6e-18	51.6
WP_071819140.1\|2581967_2582087_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_012304199.1\|2582079_2584995_+\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	1.5e-155	52.3
WP_012304200.1\|2585006_2585471_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-44	56.2
WP_012304201.1\|2585467_2586562_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.2e-126	66.0
WP_012304202.1\|2586636_2586852_+	transcriptional activator Ogr/delta	S4TNZ3	Salmonella_phage	4.8e-19	62.0
2587005:2587127	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3096881 : 3105927

Shigella_phage(33.33%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012304333.1\|3096881_3097301_-\|tail	tail assembly protein	F1BUK2	Cronobacter_phage	1.4e-06	33.9
WP_011192007.1\|3097302_3098019_-	hypothetical protein	NA	NA	NA	NA
WP_011192006.1\|3098115_3098718_-	YmfQ family protein	A0A2P9JZK7	Alteromonadaceae_phage	2.0e-33	38.6
WP_011192005.1\|3098714_3099851_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.5e-31	30.5
WP_002208848.1\|3099854_3100310_-	hypothetical protein	A0A0C4UR04	Shigella_phage	4.3e-17	43.8
WP_002215460.1\|3100306_3100903_-\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_002208850.1\|3100918_3101974_-\|tail	tail protein	M1PVV2	Vibrio_phage	1.3e-37	27.2
WP_012304334.1\|3101970_3103377_-	hypothetical protein	Q8SBG8	Shigella_phage	2.1e-17	33.7
WP_154018379.1\|3103330_3103504_-	hypothetical protein	NA	NA	NA	NA
WP_012304335.1\|3103643_3105137_-	hypothetical protein	NA	NA	NA	NA
WP_002208854.1\|3105257_3105557_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_002208855.1\|3105558_3105927_-\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_7

3372557 : 3464671

Enterobacteria_phage(18.75%)

protease,tail,tRNA,capsid,plate,integrase,transposase

attL 3394745:3394782|attR 3445399:3445436

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012304013.1\|3372557_3373766_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	5.4e-51	50.8
WP_011191911.1\|3373913_3374786_-	23S rRNA pseudouridine(2604) synthase RluF	NA	NA	NA	NA
WP_012304416.1\|3375185_3377393_+	DUF4401 domain-containing protein	NA	NA	NA	NA
WP_011191909.1\|3377385_3377916_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA
WP_012304417.1\|3378071_3380453_+	glycosyl hydrolase	NA	NA	NA	NA
WP_012304418.1\|3380531_3382160_-	hypothetical protein	NA	NA	NA	NA
WP_011191906.1\|3382632_3383484_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.5e-50	41.1
WP_002209763.1\|3383509_3384499_+	aldo/keto reductase	NA	NA	NA	NA
WP_002209764.1\|3384553_3385447_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002215253.1\|3385749_3386055_-	hypothetical protein	NA	NA	NA	NA
WP_002227854.1\|3386151_3386523_-	hypothetical protein	NA	NA	NA	NA
WP_012105549.1\|3386534_3387854_-	phosphatase PAP2/dual specificity phosphatase family protein	NA	NA	NA	NA
WP_012304419.1\|3387846_3389610_-	bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_002209768.1\|3389606_3390239_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_011191901.1\|3390248_3391178_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_002209770.1\|3391170_3391773_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_002354559.1\|3392172_3392379_-	hypothetical protein	NA	NA	NA	NA
WP_080513694.1\|3392590_3392869_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y6Q1	Salmonella_phage	8.4e-32	73.8
WP_002215266.1\|3392951_3393290_+	hypothetical protein	NA	NA	NA	NA
WP_012304420.1\|3393274_3393922_+	hypothetical protein	NA	NA	NA	NA
WP_002215268.1\|3394035_3394236_+	hypothetical protein	NA	NA	NA	NA
WP_002215270.1\|3394494_3394677_+	AlpA family phage regulatory protein	NA	NA	NA	NA
3394745:3394782	attL	NA	NA	NA	NA
WP_112473254.1\|3394936_3395305_-\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	9.5e-07	32.0
WP_012304424.1\|3396784_3397783_-	hypothetical protein	NA	NA	NA	NA
WP_012304428.1\|3399757_3400390_-	hypothetical protein	NA	NA	NA	NA
WP_012304429.1\|3400650_3401361_-	peptidase P60	K7P6F5	Enterobacteria_phage	8.8e-110	77.3
WP_012304430.1\|3401363_3402116_-\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	9.4e-102	67.7
WP_012304431.1\|3402132_3402474_-\|tail	phage tail protein	I6PBN7	Cronobacter_phage	3.1e-28	50.4
WP_012304432.1\|3402476_3402683_-	hypothetical protein	K7PLQ6	Enterobacteria_phage	2.5e-09	74.4
WP_012304433.1\|3402787_3403510_+	LexA family transcriptional regulator	A0A2R2X2B0	Escherichia_phage	2.3e-65	55.5
WP_012304434.1\|3403646_3404069_+	hypothetical protein	NA	NA	NA	NA
WP_041176002.1\|3404181_3404880_+	hypothetical protein	NA	NA	NA	NA
WP_012304436.1\|3404876_3405458_+	hypothetical protein	NA	NA	NA	NA
WP_012304437.1\|3405526_3405763_-	DUF2767 family protein	NA	NA	NA	NA
WP_050756397.1\|3406155_3406776_+\|integrase	site-specific integrase	A0A248SL35	Klebsiella_phage	6.9e-18	34.5
WP_012304439.1\|3406849_3407092_+	DinI family protein	K7PKR6	Enterobacteria_phage	2.5e-24	70.1
WP_012304440.1\|3407105_3407351_+	DinI-like family protein	K7PLW4	Enterobacteria_phage	1.5e-11	45.0
WP_012304441.1\|3407737_3408175_-\|tail	tail assembly chaperone gp38	B6SCW7	Bacteriophage	6.8e-12	34.7
WP_012304442.1\|3408184_3409276_-	hypothetical protein	Q76YB0	Aeromonas_virus	4.8e-06	38.6
WP_012304443.1\|3409326_3409923_-	YmfQ family protein	A0A2P9JZK7	Alteromonadaceae_phage	1.1e-33	38.3
WP_012304444.1\|3409919_3411056_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	3.7e-33	31.7
WP_012304445.1\|3411059_3411497_-	hypothetical protein	A0A0C4UR04	Shigella_phage	2.3e-20	46.2
WP_012304446.1\|3411493_3412087_-\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_012304447.1\|3412086_3413157_-\|tail	tail protein	M1PVV2	Vibrio_phage	3.1e-42	30.9
WP_012304448.1\|3413153_3414560_-	hypothetical protein	A0A192Y5U9	Salmonella_phage	2.3e-24	27.7
WP_012304449.1\|3414636_3415167_-	zinc ribbon domain-containing protein	S4TR42	Salmonella_phage	4.2e-24	59.8
WP_012304450.1\|3415270_3417217_-	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	2.3e-14	24.0
WP_012304451.1\|3417339_3417639_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_012304452.1\|3417640_3418015_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012304453.1\|3418027_3419461_-\|tail	Mu tail sheath family protein	B5TK67	Pseudomonas_phage	4.3e-71	47.4
WP_012304454.1\|3419457_3419802_-	hypothetical protein	NA	NA	NA	NA
WP_012304455.1\|3419801_3420194_-	hypothetical protein	NA	NA	NA	NA
WP_012304456.1\|3420195_3421242_-\|capsid	major capsid protein	A0A059WRQ2	Vibrio_phage	2.6e-41	31.4
WP_123767129.1\|3421351_3421762_-	hypothetical protein	K7PH49	Enterobacterial_phage	2.4e-11	47.0
WP_050756398.1\|3421932_3422262_+	hypothetical protein	H6WRV0	Salmonella_phage	8.5e-07	43.3
WP_012304459.1\|3422432_3423587_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	3.6e-161	70.7
WP_012304460.1\|3423792_3424641_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_012304462.1\|3425307_3425691_-	hypothetical protein	NA	NA	NA	NA
WP_012304463.1\|3425754_3426084_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_012304464.1\|3426096_3426567_-	DNA repair protein RadC	NA	NA	NA	NA
WP_012304465.1\|3426637_3427459_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	4.0e-45	38.4
WP_012304466.1\|3427547_3427886_-	hypothetical protein	NA	NA	NA	NA
WP_012304467.1\|3427906_3428371_-	hypothetical protein	NA	NA	NA	NA
WP_098087307.1\|3428383_3428482_-	hypothetical protein	NA	NA	NA	NA
WP_012304468.1\|3428871_3429759_-	HSR1-like GTP-binding protein	NA	NA	NA	NA
WP_050320373.1\|3429850_3431224_-	hypothetical protein	NA	NA	NA	NA
WP_012304470.1\|3431787_3432375_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_012304471.1\|3432472_3432679_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_012304473.1\|3433249_3433945_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_012304474.1\|3434267_3435014_+	HNH endonuclease	NA	NA	NA	NA
WP_012304475.1\|3435096_3437145_+	AAA family ATPase	NA	NA	NA	NA
WP_012304476.1\|3437155_3439078_+	AAA family ATPase	NA	NA	NA	NA
WP_012304477.1\|3439342_3439672_+	hypothetical protein	NA	NA	NA	NA
WP_012304478.1\|3439671_3442944_+	hypothetical protein	NA	NA	NA	NA
WP_012304480.1\|3443987_3445196_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.1e-135	57.5
WP_002209774.1\|3445683_3446550_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.2e-30	34.1
3445399:3445436	attR	NA	NA	NA	NA
WP_002209775.1\|3446564_3446777_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_012304481.1\|3446998_3448384_-\|tRNA	cysteine--tRNA ligase	A0A0G2Y344	Acanthamoeba_polyphaga_mimivirus	2.6e-41	28.9
WP_002208567.1\|3448594_3449089_+	peptidylprolyl isomerase B	NA	NA	NA	NA
WP_002208568.1\|3449099_3449822_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
WP_002208569.1\|3450137_3450662_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	NA	NA	NA
WP_002208570.1\|3450658_3451723_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_012304482.1\|3451766_3454196_-	ABC transporter permease	NA	NA	NA	NA
WP_011191895.1\|3454192_3454879_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-31	34.2
WP_002227832.1\|3454846_3455485_+\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA
WP_002208574.1\|3455871_3456648_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002208575.1\|3456724_3457594_+	co-chaperone YbbN	NA	NA	NA	NA
WP_002208576.1\|3457788_3458703_+	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_002208577.1\|3458705_3459155_+	NfeD family protein	NA	NA	NA	NA
WP_002208578.1\|3459334_3459754_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_011191893.1\|3459960_3462846_+	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	7.8e-112	36.8
WP_002208580.1\|3463118_3463928_+	hypothetical protein	NA	NA	NA	NA
WP_011191892.1\|3464191_3464671_+\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA	NA	NA	NA

DBSCAN-SWA_8

3473941 : 3481398

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012304486.1\|3473941_3475315_-	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	2.8e-35	29.1
WP_012304487.1\|3475618_3476578_-	NAD-dependent epimerase/dehydratase family protein	A0A2D2W2D2	Stenotrophomonas_phage	4.7e-05	29.3
WP_012304488.1\|3476925_3477675_-	glycosyltransferase	A0A1V0SAH6	Catovirus	1.8e-07	36.0
WP_080513696.1\|3477709_3479104_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.6e-52	30.7
WP_002223297.1\|3479305_3480271_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	2.1e-82	47.9
WP_011191888.1\|3480276_3481398_-	GDP-mannose 4,6-dehydratase	M1HVG7	Acanthocystis_turfacea_Chlorella_virus	5.8e-132	64.4

Anti-CRISPR protein detection

Acr_ID: NC_010465.1|WP_012303831.1|1369204_1369426_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_010465.1|WP_012303831.1|1369204_1369426_+|hypothetical-protein

1369204_1369426_+

73 aa aa

1331574-1371200

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_010465_3	Orphan	3.2\|2756364\|32\|NC_010465\|CRISPRCasFinder,CRT,PILER-CR	2756364-2756395	32	1349824-1349855	0

1. spacer 3.2|2756364|32|NC_010465|CRISPRCasFinder,CRT,PILER-CR matches to NC_010465 position: 1349824-1349855, mismatch: 0

atccagtgtcactgctgggaaggtttcaagtt	CRISPR spacer
atccagtgtcactgctgggaaggtttcaagtt	Protospacer
********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010465

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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