CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010506	Shewanella woodyi ATCC 51908, complete genome	9 crisprs	cas3,csa3,DEDDh,DinG,WYL	2	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010506_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010506_1

559743-559876

Orphan

Consensus_repeat	Method
TCATGTGGCTTTGATTACATAGATTCGCTGCCTGTATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010506_1

>merge|NC_010506|1|559743-559876|CRISPRCasFinder
TCATGTGGCTTTGATTACATAGATTCGCTGCCTGTATCTGGCAGTATGTTAGCTTAAAAAGTGTAATCTAACTTTACCCAAGCGGTACGGCCTGGTTCATGTGGCTTTGATTACATAGATTCGCTGCCCGTATC

>NC_010506|1|1|559743-559876|CRISPRCasFinder
TCATGTGGCTTTGATTACATAGATTCGCTGCCTGTATC	TGGCAGTATGTTAGCTTAAAAAGTGTAATCTAACTTTACCCAAGCGGTACGGCCTGGT
TCATGTGGCTTTGATTACATAGATTCGCTGCCCGTATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010506.1\|WP_012323105.1\|569914_570598_+\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NC_010506.1\|WP_012323098.1\|555915_559374_-\|DUF1566-domain-containing-protein	unknown	unknown	gnl\|CDD\|377878
NC_010506.1\|WP_012323094.1\|550631_551774_+\|alanine--glyoxylate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223153
NC_010506.1\|WP_012323104.1\|569223_569886_+\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NC_010506.1\|WP_012323108.1\|573365_573851_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_010506.1\|WP_012323106.1\|570609_571659_+\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NC_010506.1\|WP_012323099.1\|559891_561880_-\|TonB-dependent-copper-receptor	unknown	unknown	gnl\|CDD\|273801
NC_010506.1\|WP_012323102.1\|566159_567080_+\|DUF2971-domain-containing-protein	unknown	unknown	gnl\|CDD\|378585
NC_010506.1\|WP_012323103.1\|568007_569195_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320691
NC_010506.1\|WP_012323101.1\|564228_566049_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NC_010506.1\|WP_012323100.1\|562212_562866_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NC_010506.1\|WP_041417899.1\|543415_545071_+\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
NC_010506.1\|WP_012323092.1\|546945_548796_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NC_010506.1\|WP_012323095.1\|551849_553784_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012323091.1\|545474_546398_+\|branched-chain-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|235841
NC_010506.1\|WP_012323097.1\|555195_555801_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NC_010506.1\|WP_012323090.1\|545128_545383_+\|acetolactate-synthase-2-small-subunit	unknown	unknown	gnl\|CDD\|236862
NC_010506.1\|WP_012323093.1\|548797_550348_+\|threonine-ammonia-lyase,-biosynthetic	unknown	unknown	gnl\|CDD\|236417
NC_010506.1\|WP_012323096.1\|553933_555064_-\|hydrolase	unknown	unknown	gnl\|CDD\|293841
NC_010506.1\|WP_041417467.1\|571735_573094_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367

Protein	Function_ID	Function_description	E-value
NC_010506.1\|WP_012323105.1\|569914_570598_+\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	2.71111e-71
NC_010506.1\|WP_012323098.1\|555915_559374_-\|DUF1566-domain-containing-protein	gnl\|CDD\|377878	pfam07603, DUF1566, Protein of unknown function (DUF1566). These proteins of unknown function are found in Leptospira interrogans and in several gamma proteobacteria.	5.2778e-22
NC_010506.1\|WP_012323094.1\|550631_551774_+\|alanine--glyoxylate-aminotransferase-family-protein	gnl\|CDD\|223153	COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism].	8.55824e-153
NC_010506.1\|WP_012323104.1\|569223_569886_+\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	4.10304e-62
NC_010506.1\|WP_012323108.1\|573365_573851_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.05593e-44
NC_010506.1\|WP_012323106.1\|570609_571659_+\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	3.92424e-75
NC_010506.1\|WP_012323099.1\|559891_561880_-\|TonB-dependent-copper-receptor	gnl\|CDD\|273801	TIGR01778, TonB-copper, TonB-dependent copper receptor. This model represents a family of proteobacterial TonB-dependent outer membrane receptor/transporters which bind and translocate copper ions. Two characterized members of this family exist, outer membrane protein C (OprC) from Pseudomonas aeruginosa and NosA from Pseudomonas stutzeri which is responsible for providing copper for the copper-containing N2O reducatse. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	0
NC_010506.1\|WP_012323102.1\|566159_567080_+\|DUF2971-domain-containing-protein	gnl\|CDD\|378585	pfam11185, DUF2971, Protein of unknown function (DUF2971). This bacterial family of proteins has no known function.	1.75195e-13
NC_010506.1\|WP_012323103.1\|568007_569195_+\|M48-family-metallopeptidase	gnl\|CDD\|320691	cd07332, M48C_Oma1_like, Peptidase M48C Ste24p, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	1.37559e-66
NC_010506.1\|WP_012323101.1\|564228_566049_+\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	3.80899e-12
NC_010506.1\|WP_012323100.1\|562212_562866_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	1.22247e-24
NC_010506.1\|WP_041417899.1\|543415_545071_+\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
NC_010506.1\|WP_012323092.1\|546945_548796_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NC_010506.1\|WP_012323091.1\|545474_546398_+\|branched-chain-amino-acid-transaminase	gnl\|CDD\|235841	PRK06606, PRK06606, branched-chain amino acid transaminase.	0
NC_010506.1\|WP_012323097.1\|555195_555801_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	6.52052e-19
NC_010506.1\|WP_012323090.1\|545128_545383_+\|acetolactate-synthase-2-small-subunit	gnl\|CDD\|236862	PRK11152, ilvM, acetolactate synthase 2 small subunit.	2.44749e-30
NC_010506.1\|WP_012323093.1\|548797_550348_+\|threonine-ammonia-lyase,-biosynthetic	gnl\|CDD\|236417	PRK09224, PRK09224, threonine ammonia-lyase IlvA.	0
NC_010506.1\|WP_012323096.1\|553933_555064_-\|hydrolase	gnl\|CDD\|293841	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain. Derepression of the romA-ramA locus results in a multidrug-resistance phenotype. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	8.17362e-84
NC_010506.1\|WP_041417467.1\|571735_573094_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	3.23554e-134

>NC_010506.1|WP_012323098.1|555915_559374_-|DUF1566-domain-containing-protein
MNVLTRLSILLIMITGLGACGGSDKSTTPEPEKPNPVIEPKTELKGIPDSFQVKACIDEDADFTCDATPVAITEVYKGIDIDKLAPDARVLIELAPPEATGIGSFIAFEGKRFMSFPVGEEEASPFNLLALGVVQYAQELGEDWCCGHAIPLNLKEAKSYLAQNFKLDGSGQQNEAILQAFNSNLEQLGGNGLSLKQAYDADIKAMAESLVDLTLHSQSICDRVPEYCEGNPDDPYPPIDLSNIVPCITAYDGGSCVAQIPKLQVESTVTDEMFRLTQKEAGNIAYNIRSREKEPLPFEKAFEQLTCKDDEEKQVFMYGVGDNFATTNIENTSPSAALTAWLGTVPNNLVHPYDFDASISPANPNIFADTLSNLPSDLTNGLLVMGLKERGFTLSDTPNYFDIFAIGDATNISSNANVSGTVSDIRSSWQSVSPNVYFENLQNIQNQAGTQSLLDKLHAGQTDLDLVMMPTTNVDFVAVAACRVKAPQKPIETPVKEVISVLTEKFTCNAEQGETYYEIVGGEPDDFTPGSDQNTPSTALSSLTGTLVTYDQIEAKDSTFIDTLALPSGSSITKAQFMINARATSPSAANDKVFLANTPLNNMVTGFTTTAPGALVTQWPNGTLNGGAAYIIDGLFNIPSLPTTPNLLTILNSANASGSGLDILVSENTEVDTTLLQLCINTGDQPCVDTDGDGYCDEEEKDAGSDPTNPDSTPIDLDGDGALNDDDCDPNDPTVTDQCNEVIYTDVLPESCSEYVTVDLSLANSWANSAGNPPVVNNVFDGTQYQGIVWDGALSWFDFGSASNVTHKLNQDFCSCGGGKVVIDEFKSDNMGYIDLNNLTNQTANRIVSRTQYSQSTMASWGPSESGSNTFSGTGNGVDFNLELGVQNVSGPSGGAVKGRLEFIGHLGACTTQDVVDNSGGTGTVGGVGPAINVGSIAVTHELLSNLPVIQETTAPFIKLDDNGNPLAEQTLPWSDTGSESEGTQWSCVKDVATNLIWEVKRNSNGIKKESLHDADDVYAWFDPDPTTNGGFSGANTSGNFCFGFDANDSSTFCNSQRFEDSVNNADFCGSADGWRLPTIEELEGLVDTNYATPMINGAYFPNTPLQSAFWSSTTNPNDSNKAEHLFFYNGQSYNSTSKTYTAASVRLVRDQ
>NC_010506.1|WP_012323097.1|555195_555801_+|TetR/AcrR-family-transcriptional-regulator
MDKKISRSELKRRAIIGAAMSEFQTKGFKATSMDDVAKRAEVSKRTVYNHFSSKEALFSAIILEMMALLCAFEYFTFSDDIALEVQLEKLVDIEVEQLKSQAFMDMARVIIAEAVHSPELIQGAMDEFNKQETPLNTWFQAALEAGALKGQSHEIIVTQFVGVIKAFCFWPQLLQGAAFPSDEEVVAIKKTVVEMVLKQYS
>NC_010506.1|WP_012323096.1|553933_555064_-|hydrolase
MKPLIAITLTLIFGGAMLTMTTSSIEPSINNAKGTHHSDKGGYINTAADFTEETAILPLLMRYATEKRVDAEPEQMQPIIELTSKQLMELPSDQDMVIRLGHSSIFMQLDGKKWLIDPVFSERASPFSFIGPKRFHPTPISLKDLPEIDGVLISHDHYDHLDKATIKHLASTSTQFIVPLGVDKHLLRWGVAANKVQSLDWWESFNLGSTKITAMPTQHFSGRGIFDKNETLWASYVIESQQNKIYFSGDSGYFAGFKEIGDRFGPFTLTMVETGAYDADWPTIHMTPEQSLQAHIDLRGETMMPIHNGTFDLAFHSWYEPLERIVKLANDTDVKLATPMMGQGLTLKNNQLNTSQLSTTEYWWRTETQREMALAL
>NC_010506.1|WP_012323095.1|551849_553784_-|hypothetical-protein
MKRIHIELIFIITLVVAITSYFLWPSPQIAPTHIEHVNTEANLNTANITETVILNYSNKPVFSYQKCKQLIKNNYVKSNDFGRKQNWSKYLDEGYSVDEITSAIDHFSNSNFAASWRAEQLKKQSTLNLNILKINELLKVEIPDLPEDFSFTVAVPNPALENITNLTEKAALQLIKTTELSIDDVAWLIEQEEVSQHILTEAINRLDDINQLLGYETISDEQLLLIDVAAFEGRNNIVNQLLQRHSNISNDPYLGSTMEHALAKLTYVLGKNIESDAVIRQVNIIEQLQSLNAPAFFETQTDQLVSGGYPRNYYKFTEEQLASLSAHYQLDLTQVQTREKLAFDPDAKLIVKLSQERALLLEKEVTQEQLHTCKAKVSAVDKRWQPKNLSHYTVQLKNENREVNAANLNSIDPVLADCFMATQTSYLRYSRPKNKELESEVFALHLRKNNILEAIKAIESANLTEEQLRWFFYQIIPWDTAYYQPLQSSQLKQEQIDFNLLMMFGRSNSAYFEELRINGIDITGMDHTGKSLIYLSVEKRNLELLSYLVSQRADYHLNPIGIDPLYLIIDSSYHFNPNTVLDYLESLMQLSPPVHSYHKRALALLRLKYPELYQQISARFEELTITEDTPLPQASCYGNNLNSR
>NC_010506.1|WP_012323094.1|550631_551774_+|alanine--glyoxylate-aminotransferase-family-protein
MLVAPKIDAFNPPRRTLMGPGPSDVYPEVLAAQARPTIGHLDPLFVAMMDELKSLIQYAFQTKNEMTLAVSAPGSAGMETCFVNLVEAGEKVIVCRNGVFGERMRQNVERVGATAVMVDNEWGEPVSVSDVEATLKANPDAKFLAFVHAETSTGALSDAKSLCALAKQHGCLSIVDAVTSVGGVELRVDEWGIDAIYAGSQKCLSCVPGLSPVSFSPAAVEKIKARKTPVQSWFLDQTLVMGYWSGNAAAGGKRSYHHTAPVNALYALHESLRLLANEGLESAWQRHADMHQVLRQGLEGLGLKFVVDETSRLPQLNAVYIPEGVDDAAVRNQLLQNYNLEIGAGLGALAGKAWRIGLMGFGARRENVALCLKALEDVLK
>NC_010506.1|WP_012323093.1|548797_550348_+|threonine-ammonia-lyase,-biosynthetic
MLALASKSKLDLAHYYLQKTLLSSVYDVAKVTPLSSLNKLSARLGCQVFLKREDMQPVHSFKLRGAYNKMSELTAQECECGVVCASAGNHAQGVAMSAAARGISAVIVMPETTPDIKVDAVRRLGGEVVLHGQAFDQANAYAQNLAKTEGRVYVAPFDDEAVIAGQGTVAQEMLQQQRDLEVVFVPVGGGGLIAGIAAYYKAVMPQVKIIGVEPEDSACLKAALEADERVVLAQVGLFADGVAVKQIGAEPFRLAREYVDSVVTVTSDEICASVKDIFEDTRAIAEPAGALALAGLKKYMGSEGRGEKVAAILSGANVNFHSLRYVSERCELGEKKEAILAVKVPERPGIFLRFCELLEKRVMTEFNYRFSSRDKAVVFAGIRLSQGQEELDEIVARLESDGFEVQDLSHDETAKLHVRYMVGGHPPEALEERLFSFEFPEHPGALFKFLTTLQSKWNISLFHYRNHGAAYGRVLAGFEVPESDSLAFQQFLTELGFVYQEETQSPAYKLFLDNRD
>NC_010506.1|WP_012323092.1|546945_548796_+|dihydroxy-acid-dehydratase
MPKLRSATSTQGRNMAGARALWRATGVKDSDFGKPIIAISNSFTQFVPGHVHLKDMGSLVAGAIEEAGGIAKEFNTIAVDDGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADALVCISNCDKITPGMMMAALRLNIPVIFVSGGPMEAGKTKLSGDIIKLDLVDAMVAGADERVSDEDSEKIERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGSMLATHADRRELFLEAGRRIMDLATRYYKHDDESALPRNIANFNAFENAMTLDIAMGGSSNTVLHLLAGAQEAKVDFTMDDIDRLSRKVPHLCKVAPSTPKYHMEDVHRAGGVMGILGELDRAGLIHNDAYHVAGKNLKEVLAKWDIAQSQDEAVRKFFSAGPAGIPTTKAFSQDCRWDSVDDDREGGCIRKREFAFSQEGGLAVLSGNIALDGCIVKTAGVEEENHTFIGSARVYESQDDAVAGILGGEVVAGDVVVIRYEGPKGGPGMQEMLYPTSYLKSRGLGKACALITDGRFSGGTSGLSIGHVSPEAAAGGTIGLVETGDRIEIDIPARSIKLAISDVELAARRSAMESRGKQAWKPVDRIREVSLALKAYALLATSADKGAVRDVSKLED
>NC_010506.1|WP_012323091.1|545474_546398_+|branched-chain-amino-acid-transaminase
MTAKRAEYIWFNGEIMPWGDAKVHVMSHGLHYGSSVFEGIRVYDTHLGPAGFRLTPHVERLYDSAKIYRMPIPYSFDELMQSCTDIVKKNDLKSAYIRPLAFYGDVGMGITPPKDAVCDVMVAAFPWGAYLGEDSMEAGVDVAVTSWNRLAPNTIPTGAKAGGNYLSSIQISTEAKRNGFDEGIALDVNGLVSEGAGANLFVVKKGKIYTPPATAAILMGLTRDSIMVLARDLGYEVVEEAMSREFLYLADEIFMTGTAAEIVPVRSVDRIEVGEGKRGAITKQIQQSFFGLFDGSTEDKWGWLEVL
>NC_010506.1|WP_012323090.1|545128_545383_+|acetolactate-synthase-2-small-subunit
MKHTVNLTLEQRPEVLERVLRVVRHRGFKVTKMNMSLESEKVADLDMTVESERAIELLTKQLDKLVDVLSCNASEHRVPERLVS
>NC_010506.1|WP_041417899.1|543415_545071_+|acetolactate-synthase-2-catalytic-subunit
MRGADAVIKVLTAHGVTNIFGYPGGAIMPIYDALYGAPVEHLLSRHEQGAAFAALGYARASGKTGVCFATSGPGATNLVTSLADALLDSVPVVAITGQVSTAVIGTDAFQEIDVLGMSLSCTKHSFMVTEMDELVPTLYKAFEIAASGRPGPVLVDIPKDIQIGMLEYKTPLQDRVEEPELDTAKLDDAVTLLTQAKKPMLYVGGGVGMASAVEPLRKFIRVTGVPSVATLKGLGSIAHDTPGYLGMLGMHGSKAANIAVQECDLLIVVGARFDDRVTGRLATFAEHAKVIHLDIDAAELGKLRLPEVAIDGDLRQILPALATPLDITPWQEEIASLKVEHQWNYDRPGELIFAPAMLNRLADKLPDDSVVCCDVGQHQMWVAQHMWFRKPEDHLSSAGLGTMGFGLPAAIGAKVSRPDATVVAVSGDGSFMMNVQELTTIKRRKLAVKILLIDNQKLGMVKQWQQLFFEERYSETDLSDNPDFVTMASAFDIPGRTITTSDEVEAALEHLVNCDGPYLLHVRIDDAHNVWPLVPPGACNRDMMEEMDKST
>NC_010506.1|WP_012323099.1|559891_561880_-|TonB-dependent-copper-receptor
MNRHKQILTSLFTASSCILSPFSTFADTQGCEQDSCDEHIVVTGELMREPAKVFTDPKKPRLPLPAYDGAGFLKTIPGFSIGRKGGAGGDPSLRGLGGSRLSIVDDGQHVYGTCGGRMDPPTAYIYPEAYDNITVIKGPQTVKYGPVGSAGTVLFEKDRHSFSEQDMEGRASITGGSADRRDYLVELKAGDEKHYLDLDINQSSSDHYQDGSGNSVQSSYDRNNYNLALGWTPTDSSVIELAYGQSSGEAEYADRANKAREISNENLTLLAQFEFDSELINGLEFQAYTNENNHIMDQFDQGVNSGSNVRRSTYGGHLWLDLTLGDNWQATVGVDYMSSAHEGRAITANVDFGLDDLLSKPFNDNMRYENSGLFIEASVDMGKGTLLSGLRFDHWQTKLFVAQQGKRTDELYSGFLRYELLSGNSQYYLGAGHAQRIPDYWEIMKSSSANSAEKAFDLEPEKTTQMDIGWIYQADVELSSSLFYGQIDDYILIDANTKSASAYNIDATVWGGEFGISYPFSDNLSAQTTLSYSRGQNDSQDVPLGQIPPLEGRLSLDYQDGNWTAGLLWRVVAAQDRVSIGQGNISGQDLGESSGFGTLAVNGTWKHGDAILVSLGIENLFDITYAEHISRSGAGNDVPGSEPMFQVHEPGRTAWVKLDYTF
>NC_010506.1|WP_012323100.1|562212_562866_+|2OG-Fe(II)-oxygenase
MALHTGLEIDPSMDQYTSLFESIVQDVADNGYSIKTNALPVELAQKLSARAQAISDTHFKAAGIGRSNELMLDTQIRSDEICWIVGDSELGASWLNWVEGLKQYVNRTLFLGLDEFESHFAHYSEGDFYQKHKDAFRGESNRILTLVAYLNEDWSEECGGELLVYPDDSDEVIAKVAPHFGTIVVFMSEEFPHEVLPAKCDRYSIATWFRRKSDKLS
>NC_010506.1|WP_012323101.1|564228_566049_+|ATP-binding-protein
MKIKIRNKHKSIPAGLEFELPQFTVLTGENGSGKTHLFEAISDKKNGQVTLEEGGLNSISYIPFGGLNPQVDQQCDPAQISQKVKQVWQEVANAKLQIERRSRGVEYTGAPEGDPILNHVGNAQHKEAILSISQQLSILPSQLTEDIISDRISMMSLSGSNLFNSQFALIFKSYHVRYLDNKLNKVYEDEGTSDANPYLKDEEFKEQYGEAPWDFVNGILAKLCLPYTVNNPINSKRDSTFVFKLIHNQSGIEIGTNDLSTGEKTLMSLALAIYNSIGTGDRADCLILDEPDAPLHPSMSKLMLEIVEEEIVQKHGIPVLLSTHSPTTIACTPANALYKITAAEKIPTQCDLHDSMRILTYGIPNLRVSTEHRRQIFVEHTYDVEYYESLFDIISRKIEFVTIPQFLPPHTNNGSNCDAVLEITRKLRDMGNSQVYGLIDWDLKNEPEQQVVILGLGRRYAIENYIFEPHFLGLYLIHKKFASPEELGLEGCNSYLDVITLISNNSDAIQIIVDSVQEKLLPEEETSSYFESFLIDESSIRIDQRILDIKGHTLEDLARESWPQLNCVRSNNGGDSVLKKDVISTVINDFPGLISIDIADTFRELR
>NC_010506.1|WP_012323102.1|566159_567080_+|DUF2971-domain-containing-protein
MSKIYKYFGSSVFELVFDKEGFCGVKCSLPKDYNDPYELFLAMDLNVPTEYLAFYNDVIQEMPQFPTSCFSKSPIVSPMWAHYANNHTGFAIEFDLEKLQQHFDGNPFWGVDYREEPHKSLGDIVQRAAELKKPRYTYDLQRFAFSEAYFSKYAQWSYEEELRFVDTTGVTEKAAGNDILYIPMDCLVSVIVGPKSDEQLITSSQKAVEECGLNWYQLVIGKSHPQPYFRSIDGTICTFKDGDVLAHDELCDRCEEPINSGSEMCPLCSITEAHAIEAAAGNPFRLISEAGQLEGYMRSMDAIHRK
>NC_010506.1|WP_012323103.1|568007_569195_+|M48-family-metallopeptidase
MSEVRSEYLYPCHGIHSALPKGRASGQLTICKTHLMFTVNDKTVQLGFAELEISQGGASDRLIFFNHPACADWRFYCSDRSVLKNPYLKQAPHLNSVMAKATRKRQFNWLVLTVVVLLCVLVPVGLLANLGTGSKMIAKQVPVEWEESLGSSSFDQYSLQSELMDEQRGELLLAPLVQPLLEVLPNKRYQYQFYISDDSELNAFALPGGVVVINSGLILAADSPEELLGVLSHEIVHVREQHGIRNLISSAGTYLILSAILGDVSGLMAVVVDSAPLLINQGYSRQFETQADEQGFDMLVTANIDPKGLPLFFNKLLDKEAKMLESIEDEDQRGLIETGLGFLSSHPATKDRIENLEARAASIDAEFIVLDEAFFKLQDAVAEFVVKHEEPESGL
>NC_010506.1|WP_012323104.1|569223_569886_+|TIGR00266-family-protein
MEAKIMGSQAFSYIDIDLEPGETVIAESDAMSSMDADLDLTATFNGGFFKGLLKKFFGGETLFISRYSNNTSAPKRVTLVQPVPGELRCHELNGDEFNLQPGAYLASTEGVKLGLRWAGFVSFIAREGLFKLTVTGEGKVWYGAYGALLEKEIDGEYIVDTSHLVAYEPGIKLKLQLAGGIFSSFFGGEGLVTRVEGKGKIIVQSRSVSGLAGWLNPKFR
>NC_010506.1|WP_012323105.1|569914_570598_+|TIGR00266-family-protein
MEIELLYRPGNTAAKVTLEEGQTITTESGAMIAMSGNMDITTTTHKKKSGGFLKAAKRMLAGESLFLNHFEPKQGSGELFLGSSLAGDMMTMDLDNESLIVQNSSYMASSEGIDVDMGWQGFKSLFSGESVIWLNLKGQGKILISSFGAIYPVEVDGEYIVDSGHIVAFDETLDFSITKAGKSWWHSYLGGEGLVCKFKGKGTVWCQSHNPSSFGGALSSSLRARKA
>NC_010506.1|WP_012323106.1|570609_571659_+|TIGR00266-family-protein
MNQTYNITLTGELIGEIERSDAIAVFAKLFKLPLDKAHDFFHKAPLVVKKSVDGDTANKIQQILEKSGLHCEINPVEVVETEQSTQVGVMNESAVEAQDEQSAQEREEMLDSESQTTTDPEQPSASFKGLKFEMAGQPDYGFVTVHVPAGEMLKVEASAMATMDTNMQMKTKMRGGLGRMVTGENIFVNEFTAANMEGEVGIAPGAPGDLCHQYLDNETIYLQNSAFVACSSGIEVESKWQGLVKGFFSGESLFLIRAQGKGDLWFNSYGAIIEIDVNDDYVVDTGNIVGFTDGLEYQITKVGGYKSFFFSGEGLVCRFSGKGKVWIQTRSSAAFVGWAHWFRPVKSKG
>NC_010506.1|WP_041417467.1|571735_573094_-|sodium-dependent-transporter
MSSSNSTHFSSRLGFIMAAAGSAVGVGNIWGFPTQAATHGGGAFLLVYLVLILILGYPMLVAELMIGRHGQTNPADAMAKIGSGPVSKKIGKAIGFISIATATLICTFYTILSGWFVSFALAPIAELFGFVKVSSWLMEFSLSRNLVFTTLFILMVVFVIRQGVQQGIELWSKRLMPLLLLILVMGVIYILTQTGAMTGLEVLLVPDFSRVWEPDVLIGALGQTFFSLTIGTGAMMVYGAYLSRKEDLGKLTAYVTLTDTSVAFLAALMIIPAMYVAQHNGVQIFAEDGSLLNSDTLVFTVLPALFETLGGNLQYLLAFVFFILMTIAGLTSAISIVEVPTSYLMEKKSISRNKATYLIGALVVVLSLTVVLNFEQLFSFMITLTTERAQPLIALGIAIYLGWVWQRNDLLKDIQAQEGADSNSIFWRIWPVYVKFVCPALITLIIIQLFNS
>NC_010506.1|WP_012323108.1|573365_573851_-|Lrp/AsnC-family-transcriptional-regulator
MAELQLDKIDLAILKLLQGQGKLSNQELAEKVGLSASPCSRRVKAMEESGYIAGYATLLSAEHFNLSLTAYVQVRLEKHSQAILDSFEDKITQYDEVQECCLLTGSDADYQLKVLIADMKEFKTFLLEKLTTDPHISGVKSSFVLKQVKSKTSIPLPTQLP

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Crispr_ID: NC_010506_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010506_2

1148402-1148507

Orphan

Consensus_repeat	Method
AAAGACAGGACAGCCATATCTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010506_2

>merge|NC_010506|2|1148402-1148507|CRISPRCasFinder
AAAGACAGGACAGCCATATCTTTTTTTTGGTTTTTTTATTACGGAGCTTTAATAAGTTATTTTAAAAGGAGATTTATATAGAAAGACAGGACAGCCATATCTTTTT

>NC_010506|2|2|1148402-1148507|CRISPRCasFinder
AAAGACAGGACAGCCATATCTTTTT	TTTGGTTTTTTTATTACGGAGCTTTAATAAGTTATTTTAAAAGGAGATTTATATAG
AAAGACAGGACAGCCATATCTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010506.1\|WP_012323490.1\|1138951_1139251_+\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012323491.1\|1139381_1139663_+\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_041417963.1\|1136928_1138791_+\|TRAP-transporter-fused-permease-subunit	unknown	unknown	gnl\|CDD\|273983
NC_010506.1\|WP_012323495.1\|1145712_1147050_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226459
NC_010506.1\|WP_012323507.1\|1159127_1159424_+\|DUF4234-domain-containing-protein	unknown	unknown	gnl\|CDD\|379421
NC_010506.1\|WP_012323504.1\|1155613_1156885_+\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NC_010506.1\|WP_041417491.1\|1140924_1141113_+\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_049774248.1\|1142253_1142976_+\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012323492.1\|1141109_1141757_+\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012323497.1\|1148573_1149617_+\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012323500.1\|1150860_1152072_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|99746
NC_010506.1\|WP_012323499.1\|1150176_1150617_-\|SufE-family-protein	unknown	unknown	gnl\|CDD\|376883
NC_010506.1\|WP_012323503.1\|1154393_1154957_-\|non-canonical-purine-NTP-phosphatase	unknown	unknown	gnl\|CDD\|235336
NC_010506.1\|WP_012323496.1\|1147042_1147882_+\|DUF4435-domain-containing-protein	unknown	unknown	gnl\|CDD\|373095
NC_010506.1\|WP_012323501.1\|1152174_1153218_-\|NADP(H)-dependent-aldo-keto-reductase	unknown	unknown	gnl\|CDD\|381320
NC_010506.1\|WP_012323488.1\|1135848_1136769_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270287
NC_010506.1\|WP_012323506.1\|1158556_1159000_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_010506.1\|WP_049774444.1\|1153310_1153838_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_010506.1\|WP_049774443.1\|1143284_1144379_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181642
NC_010506.1\|WP_012323505.1\|1156961_1158329_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233

Protein	Function_ID	Function_description	E-value
NC_010506.1\|WP_012323504.1\|1155613_1156885_+\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	2.54414e-167
NC_010506.1\|WP_012323500.1\|1150860_1152072_-\|cysteine-desulfurase	gnl\|CDD\|99746	cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.	0
NC_010506.1\|WP_049774443.1\|1143284_1144379_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181642	PRK09082, PRK09082, methionine aminotransferase; Validated.	0
NC_010506.1\|WP_012323495.1\|1145712_1147050_+\|AAA-family-ATPase	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	2.32643e-18
NC_010506.1\|WP_012323507.1\|1159127_1159424_+\|DUF4234-domain-containing-protein	gnl\|CDD\|379421	pfam14018, DUF4234, Domain of unknown function (DUF4234). This presumed integral membrane protein domain is functionally uncharacterized. This domain family is found in bacteria and archaea, and is approximately 70 amino acids in length.	0.00204417
NC_010506.1\|WP_012323505.1\|1156961_1158329_+\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NC_010506.1\|WP_041417963.1\|1136928_1138791_+\|TRAP-transporter-fused-permease-subunit	gnl\|CDD\|273983	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate].	1.11942e-157
NC_010506.1\|WP_012323499.1\|1150176_1150617_-\|SufE-family-protein	gnl\|CDD\|376883	pfam02657, SufE, Fe-S metabolism associated domain. This family consists of the SufE-related proteins. These have been implicated in Fe-S metabolism and export).	6.11017e-53
NC_010506.1\|WP_012323503.1\|1154393_1154957_-\|non-canonical-purine-NTP-phosphatase	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	1.56207e-104
NC_010506.1\|WP_012323496.1\|1147042_1147882_+\|DUF4435-domain-containing-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	2.09456e-12
NC_010506.1\|WP_012323501.1\|1152174_1153218_-\|NADP(H)-dependent-aldo-keto-reductase	gnl\|CDD\|381320	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins. Escherichia coli Tas protein is the prototype of this family. It is an NADP(H)-dependent aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NADP(H) as a hydride donor.	0
NC_010506.1\|WP_012323488.1\|1135848_1136769_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270287	cd13569, PBP2_TAXI_TRAP_like_1, Substrate binding domain of putative TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This subgroup includes uncharacterized periplasmic binding proteins that are related to Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family. TRAP transporters are comprised of an SBP (substrate-binding protein) and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function.	1.39687e-114
NC_010506.1\|WP_012323506.1\|1158556_1159000_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.91886e-10
NC_010506.1\|WP_049774444.1\|1153310_1153838_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91545e-16

>NC_010506.1|WP_012323496.1|1147042_1147882_+|DUF4435-domain-containing-protein
MTSCLSQSAEEIVTEISMSESKNPWLVVEGDSDGVFFSTKRLHKSPNTIVALGWENVVGVISQVIEESITKAVFGFIDRDYREELGVVVDESYIVTTDFRDLEISLFESSSLHRLIVEYGSKFKLPLDSNEEVDLDEIKVKIYSIASKMGRLRYFSLKEGYNYPIKKLDFSKFIDQKTLELDESKLINQINAKSENKINSDLLNTILSAKLPTTLCDAKNICSGHDVVELLGLALKKVWGTNNSGEVAREKLESSFRIGYSNEEFSQTTMYKKLNALLS
>NC_010506.1|WP_012323495.1|1145712_1147050_+|AAA-family-ATPase
MENRISVISVDKLFGFLNHKVEIKEEGVTFIHGPNGCGKTTFLKLIASFFEWDIANLNDTNFEQMCIEFQDEKKITIEKTIKVKKFENEEVKTPNFIFRLFKNNENIELYEFHRNPKEIRIPPSQLDEYLPFLHQIGPRRWVDGRTDEVLSYHEVIERFSHRLPFTGRKKRPEWLQSLQENAKLHFVQTQRLLKVNIENRAHRTEKNVTNVIEIYSDEIKNKISRLLAESSAVSQSKDRSFPQRLLSMYSIEALSEDKIRKDYDETEVKIEKLMEAGLIQQEKNLALPSKAFEATEKKVLTLYLQDINEKLAVFDDLLLRIETFLSIITKKLRNKSFKVSQQDGFFIETIQGEKQVLKPTQLSSGEQHEIVLFYELIFKTSDNSFFLIDEPEISLHIDWQRQFLSDISKIASLGQHSFLVATHSPQIIGTRRDLAVSLDGGILND
>NC_010506.1|WP_049774443.1|1143284_1144379_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MTGLANEYNAINLSQGFPEFDAPERLKQGLAKYCNQGFNQYAPSSGIAPLQAQIAALTERTYGTNINPLDTVTVTSGATEALFVAIQTITHPGDEIIIFDPAYDSYKPAIELAGGHAVHIAMQAPDYAIDWQHVAAAITDRTRGIIINTPHNPSAKTLKQAEFDELKKLVSKHQLLLISDEVYEHIAFEGTPHISVLSDPELFSRAFVIASFGKTFHCTGWKMGYCIAPEALTQEFRKIHQYVTFSSFTPAQLALTDMLAEESEHITALAPFYQHKRDLLVSALQESRFTILPSEGTYFLLLDYSEISPLDDMAFCEYLIKEVGVAAIPLSVFYQSAPNDKVIRLCFAKEDDTLLQAAQMLTTL
>NC_010506.1|WP_049774248.1|1142253_1142976_+|hypothetical-protein
MFAARLVRLYFSDNSIELTMEILQFPLLAILGLFLFCIQFMPDPIVKIFFGDVVPHIQVSRQTGLVTIWRYIPILGIKRKTIIKPFSEFIPYLHHLVTPTGTGAGWNVFLAHKDSRRISFGAIGMANPKSRGDALAFWDFLQRYMDVEQPLPDSPVFETVRHLDPTTKAYDEMVGRPAKYWKRMTKAQIDRRSNEMAMYIERLANGEDLSPFEFDYEAMLTPHEQKQRKRAKKNSHAEGV
>NC_010506.1|WP_012323492.1|1141109_1141757_+|hypothetical-protein
MSRFTSIILQQKGITLQQFFDRFNVSFQEELLELIDTIKHVNLRPVEALCIYSAGGFRSIGYAVREEGDVAATESFDLNFLAALKGHDDLEAMFSNSVSSESDLSFQICADEWLHINKIDCFSKTNAIVESNLDQLYDAGYEQKVIQTEILNTIITSLAELTSQGMASPPEFSSDSFFSVQFSGGANSNILFESSKQLNSSHWHKKVERFVKENY
>NC_010506.1|WP_041417491.1|1140924_1141113_+|hypothetical-protein
MITIILLKNIRKIFLLFDMMSIDLLIVEIDSDMDWKYAFNDSNIISKSVMLNILDEVKGRYE
>NC_010506.1|WP_012323491.1|1139381_1139663_+|hypothetical-protein
MKQEQDLTEAELINIGEILEQYQGKMLKEIESVIEKHVQAASSELVSTNPELANYDYFSAVVLGELFSKLHGGNKDTAEIIMHNLQGQAGLNN
>NC_010506.1|WP_012323490.1|1138951_1139251_+|hypothetical-protein
MFSPRSAALHGGKDGGRDYGFWFSPWPSVFSVVNGFYLGKCKRTGFALLGSRALRFELRKEQRKEQRQEQRQEHLLPLSAALHGGKDGGRDYGFQIYAD
>NC_010506.1|WP_041417963.1|1136928_1138791_+|TRAP-transporter-fused-permease-subunit
MGTKAHVITLLGYLILIMAVALSAFQIWQGITSTISATYFRPVHLSWVLVLIFLHYPLVKHQQSRFYLPGRVLDVALCGLTLFAAYRMSIFDYNDIDHLLYGLGTEDLVAGCLLLALLMEGCRRTVGWVMVLIAAIFLSYSAFGDLLPSGFATKSYSLQELIQFQIYSANGVFGSALGIAATTVFIFVLFGAFLEVTGAGKFFIDLAFSIAGKYRGGPAKASVLASAGLGSISGSAIANTVTTGSVTIPMMKTLGYKPEQAAGIEASASTGGQIMPPIMGAGAFVMAQFTGVPYSEIMLASIAPAILYFFCTLLYVHLMACKLNLQAVSRTEAVLAVMKQGAHHLIPLALITTLLMMAYSPLLVGVAGCAAIIVTAALRKHSRIGLTKFMLGMKNGALMALPISVACGAAGIIVGVVGQTGIGLQFTQFVMEFSGGYMLVALGLISIVALILGMGLPVTAAYIVLAVMAVPMLGDFGLPLLTAHLIVFWLSQTSNVTPPIALAAFAGAGVANANPMRSSIEAFKLAGGLFIIPIMMAYTDLLNPEASAFEFAFAIAQTAAIIIAIAVSIEGYLLRRLSNIERGVAFMTVPLILLNPFGAGAIGILLLAGLIAVQWKGRSS
>NC_010506.1|WP_012323488.1|1135848_1136769_+|TAXI-family-TRAP-transporter-solute-binding-subunit
MFNRMFALTLLFAFSSVISAENYSIGTGGQSGVYYPFGGALAKVWSEQVPDVNVKAEVTAASVENTIKVVRGDMIAGIAMGNVVLDAYKGEGKFKGKLPVKTLFALYPNLVHALTLDKSGITSLADLKGKRISLGAPASGTAVTSAALLESIGIDVKKDIDAVYLNYSETTNALANGQIDAGFIVGGQGVGAVTQIALTHKVNILPISAKESDAFIEAFPAYSSYTIPADTYNHVAAVPTLSVWNVLVVNAKMSDEMAYNLTKSAFENIEQVRKVVKAAEMTTPANANRLEGVPLHAGAQKYLDSL
>NC_010506.1|WP_012323497.1|1148573_1149617_+|hypothetical-protein
MTLARRTLIDAETTPFYHVINRCVRRAYLCGSDELTGKSFEHRRGWIVDKIKVLSSIFCIDVCAYAVMSNHYHLVLKIDLNEVNALSHRDVISRWQQLFHGHEVATKYMKGEELIEGEQILLDGLIAEWQERLASISWFMRCLNEEVARKANREDECKGAFWEGRFKSQALLDEQALLACMMYVDLNPIRAGIADSLQSSDFTSIQERISELNTAENTQEKVLKIVDKKTVFKTVTPLKPLAEFDGATHQVTQLGIPFHFSDYLQLIDWTGRAIRYDKKGSIDSSRPKLLSELGISSAAWLTSTREFRRQYSGVSGRWDAMCKFKKKHQSGKWCKGKASSQALHPSP
>NC_010506.1|WP_012323499.1|1150176_1150617_-|SufE-family-protein
MSQVSQPSQETFLALKLDSSEILPLFEQASNWQERYRQIMLLGKALPKLDEAFRVESAQVRGCESSAWLYHSVIEDKHYFVADSDARIVKGLIGLLLTACQGKTSAEIARFDIEGYFDMLGLTGQLSPSRTNGLFALAKAIKAFSV
>NC_010506.1|WP_012323500.1|1150860_1152072_-|cysteine-desulfurase
MDFHHLRAQFPTLEQTLAGYPLCYLDTAATSQKPKQVLNAMARYYENDNANVHRAAHQLSSRATSNYETVRDKVCHFIKAKQREEIIFTHGTTESINLVAYGLTGQIKSGDLILIDTAAHHANIVPWQELAKRTGAIIKPIPLDSECRLDETAYEHLLQENPFIVALSHVSNALGTLNPVNRLVALAKQVGAITLVDGAQAIAHLDVDVQAIGCDFYVFSGHKMYGPTGVGVLYGRFDILDSLMPLMTGGEMIKTVSFEATEFNQLPNRLEPGTPPIAEVIGLGAAIDFLSALPREVIAKQEAELLSYLQTQLKQLGDITLYGANTSNIGAVAFNLADEHHQDVGILLDQQGIAVRCGHHCAMPLMQSLGLKGCCRASLGVYTSKEDIDRFIEAMASVKEMLL
>NC_010506.1|WP_012323501.1|1152174_1153218_-|NADP(H)-dependent-aldo-keto-reductase
MEYRRLPHSNLEVSELCLGTMTWGEQNTQSEAFSQLDYAIGQGINFIDTAEMYPVPPKAETQGATERILGNYLKKAGNRDNLVIATKVAAPGGKGDYIRPNMALDWRNLHEAVDSSLERLQIDTIDLYQVHWPDRNTNFFGELSYQQIDENEKLTPIIDTLEALAALQKEGKIRYIGVSNETPWGLMKYLQLAEKHNLPRVVSVQNPYNLLNRSFEVGMAEISHREEVPLLAYSPLAFGALSGKYLDDQWPEGARLTLFKRFARYTGSQVALDATKAYVELAREFKLSPAQMSLAFVNSRKFVGSNIIGATNLEQLKENIDSINTSISPELMARLDELAQVYRLPCP
>NC_010506.1|WP_049774444.1|1153310_1153838_-|GNAT-family-N-acetyltransferase
MATYNKAISRTQAQQGYTIREVTHEDDLAIAKLIREVSAEYGLSADKGFSVADPSLDNTSEQYQATGACYWVIELDGELLGGVGIAPLSGEKGVCELQKMYFSKQLRGKGFAKRMAYLALDYACEQKYQTCYLETTACLTEAISLYESLGFEHISQHLGDTGHDACEMPMLLALK
>NC_010506.1|WP_012323503.1|1154393_1154957_-|non-canonical-purine-NTP-phosphatase
MSKISQLAKIRVIIGSKNPVKVQAAQHALNQLLPNTEIECLGCHAPSGVAEQPMTADETLKGAINRVEHCQSAPDTSEADLFIAIEGGVDNFSYGPATFAYIVISDKQQRLVGRSAILPLPPVVYKALSDGEELGDVMDRLFNTDNIKQKGGAIGLLTQGVATRESIYTQALILTMAPLLNEELYQR
>NC_010506.1|WP_012323504.1|1155613_1156885_+|HAAAP-family-serine/threonine-permease
MQEEVMNTQVESSSRQGWTRQDTTWMLSLFGTAVGAGILFLPINAGMGGFWPLVMMAIIIGPMTYLAHRGLSRFVCSSQKQSSDITHVVEEYFGVGAGKAITLLYFFAIYPIVLIYGVGITNTIDSFIVNQLGMASPPRWLLSGVLILAMMSVMVSGEKLMLKVTQFLVYPLVAILAFMSLYLIPSWKMDALTQIPTTGEFLGTVWLTIPVLVFAFNHSPAISQFSVSLKREHGVNAAKKADVILRNTSMMLVGFVMLFVFSCVLSLSPAQLAESKAQNLPILSYLANVHASGFVSYFGPIIAVIAIVSSFFGHYLGATEGLKGIITKQLRSSNKEVSDKKINKFILGFMFFTIWGVAIINPSILGMIEALGGPIIAAILYLMPMYAVYKVPALKAYRGRISNIFVIIAGLLAMTAILFGMMS
>NC_010506.1|WP_012323505.1|1156961_1158329_+|L-serine-ammonia-lyase
MFSAFDIFKIGVGPSSSHTVGPMKAAKEFVDELRQRGDMTKVTRVSVDIYGSLSLTGKGHHTDTAILMGLGGNLPESVDIEAIPEFIRQIETTETLPLGKEAKSVAFPTGSVTFHAYALPLHENGMSIHAWDGDTSLFSKTYYSTGGGFIVDEEHFGLEAANEVMVPYPFAFADDLLAICKETGMSISAVMLANEKAFNSEAVIYERLGAIWDTMKSGIERGCQTEGILAGPLRVPRRAPALYRQLVTGERHSSDPMAILDWVNMFALAVSEENAAGGRVVTSPTNGAAGIIPAVMAYYDKFIQPMTQSEYTRFYMAASAIGNLYKRNASISGAEVGCQGEVGVACSMAAAGLAEIMGATPSQVCIAAEIGMEHNLGLTCDPVAGQVQVPCIERNAIASVKAINSSRMAMRRSSEPTVSLDKVIETMYETGKDMHVKYRETSQGGLAIKVTSICA
>NC_010506.1|WP_012323506.1|1158556_1159000_-|GNAT-family-N-acetyltransferase
MHIRKGQKSDLNALIQFNLAMAKETEDLALDESVLTQGVNTLLSNPEKGFYLVAEVDGEIAGSLMVTFEWSDWRAKDYYWIQSVYIRPQNRRQGIYAKLYHEVKQIAEQNGGAASFRLYVEQDNAKAQSTYSALGMEKSYYQMYEEK
>NC_010506.1|WP_012323507.1|1159127_1159424_+|DUF4234-domain-containing-protein
MAMTHHKFRVRRLSASKAVSQEPAEQHKLIHFLLTLVTFGLWGLVWWWLILKSEGKADQLFRGFDDAYWSYLIEREQPPAALHKMKVDAELKRGYFDA

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Crispr_ID: NC_010506_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010506_3

1668481-1668580

Orphan

Consensus_repeat	Method
TGAGCTATGCCGGCTTATTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010506_3

>merge|NC_010506|3|1668481-1668580|CRISPRCasFinder
TGAGCTATGCCGGCTTATTTTTTCAAATGGAGAACTCGGGAGCAATCTATTTGATTACCAGTCATAACTCAAACAAGTGAGCTATGCCGGCTTATCTTTT

>NC_010506|3|3|1668481-1668580|CRISPRCasFinder
TGAGCTATGCCGGCTTATTTTTT	CAAATGGAGAACTCGGGAGCAATCTATTTGATTACCAGTCATAACTCAAACAAG
TGAGCTATGCCGGCTTATCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010506.1\|WP_012323948.1\|1658392_1659886_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_010506.1\|WP_012323959.1\|1673861_1674185_+\|YggL-family-protein	unknown	unknown	gnl\|CDD\|183281
NC_010506.1\|WP_012323944.1\|1653611_1655135_+\|tryptophan-7-halogenase	unknown	unknown	gnl\|CDD\|368139
NC_010506.1\|WP_012323952.1\|1664997_1666134_+\|DUF5009-domain-containing-protein	unknown	unknown	gnl\|CDD\|226749
NC_010506.1\|WP_012323955.1\|1670581_1671157_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|179642
NC_010506.1\|WP_012323958.1\|1673091_1673808_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NC_010506.1\|WP_012323949.1\|1659910_1662577_+\|family-20-glycosylhydrolase	unknown	unknown	gnl\|CDD\|119337
NC_010506.1\|WP_012323962.1\|1676496_1677438_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_010506.1\|WP_012323954.1\|1669956_1670508_+\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NC_010506.1\|WP_012323956.1\|1671491_1671770_-\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NC_010506.1\|WP_012323946.1\|1656090_1656984_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NC_010506.1\|WP_012323950.1\|1662797_1663700_+\|ATPase	unknown	unknown	gnl\|CDD\|225518
NC_010506.1\|WP_049774448.1\|1671772_1672858_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NC_010506.1\|WP_012323947.1\|1657524_1658400_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NC_010506.1\|WP_012323951.1\|1663762_1664890_+\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|238434
NC_010506.1\|WP_012323963.1\|1678095_1679940_-\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577
NC_010506.1\|WP_012323945.1\|1655278_1655995_-\|SapC-family-protein	unknown	unknown	gnl\|CDD\|377801
NC_010506.1\|WP_012323960.1\|1674184_1675099_+\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NC_010506.1\|WP_041418010.1\|1666384_1667686_+\|sugar-MFS-transporter	unknown	unknown	gnl\|CDD\|340952
NC_010506.1\|WP_012323961.1\|1675327_1676158_+\|YggN-family-protein	unknown	unknown	gnl\|CDD\|378556

Protein	Function_ID	Function_description	E-value
NC_010506.1\|WP_012323948.1\|1658392_1659886_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	4.89539e-61
NC_010506.1\|WP_012323959.1\|1673861_1674185_+\|YggL-family-protein	gnl\|CDD\|183281	PRK11702, PRK11702, hypothetical protein; Provisional.	7.21686e-64
NC_010506.1\|WP_012323944.1\|1653611_1655135_+\|tryptophan-7-halogenase	gnl\|CDD\|368139	pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan halogenase catalyzes the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.	4.48955e-144
NC_010506.1\|WP_012323952.1\|1664997_1666134_+\|DUF5009-domain-containing-protein	gnl\|CDD\|226749	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown].	5.48704e-42
NC_010506.1\|WP_012323955.1\|1670581_1671157_+\|YceI-family-protein	gnl\|CDD\|179642	PRK03757, PRK03757, YceI family protein.	7.35873e-124
NC_010506.1\|WP_012323958.1\|1673091_1673808_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	3.10969e-107
NC_010506.1\|WP_012323949.1\|1659910_1662577_+\|family-20-glycosylhydrolase	gnl\|CDD\|119337	cd06569, GH20_Sm-chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.	0
NC_010506.1\|WP_012323962.1\|1676496_1677438_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.33007e-77
NC_010506.1\|WP_012323954.1\|1669956_1670508_+\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	1.87962e-57
NC_010506.1\|WP_012323956.1\|1671491_1671770_-\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	1.80941e-56
NC_010506.1\|WP_012323946.1\|1656090_1656984_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	7.34227e-10
NC_010506.1\|WP_012323950.1\|1662797_1663700_+\|ATPase	gnl\|CDD\|225518	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism].	5.06164e-61
NC_010506.1\|WP_049774448.1\|1671772_1672858_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NC_010506.1\|WP_012323947.1\|1657524_1658400_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	1.2292e-05
NC_010506.1\|WP_012323951.1\|1663762_1664890_+\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	7.05823e-143
NC_010506.1\|WP_012323963.1\|1678095_1679940_-\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0
NC_010506.1\|WP_012323945.1\|1655278_1655995_-\|SapC-family-protein	gnl\|CDD\|377801	pfam07277, SapC, SapC. This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance.	1.94922e-77
NC_010506.1\|WP_012323960.1\|1674184_1675099_+\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NC_010506.1\|WP_041418010.1\|1666384_1667686_+\|sugar-MFS-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.31995e-114
NC_010506.1\|WP_012323961.1\|1675327_1676158_+\|YggN-family-protein	gnl\|CDD\|378556	pfam11101, DUF2884, Protein of unknown function (DUF2884). Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.	4.04997e-83

>NC_010506.1|WP_041418010.1|1666384_1667686_+|sugar-MFS-transporter
MTLNSDNKRSSIIPMTIVAVLFFVLGFATWLNGSLMPYLKQILQLTPLQASLILFSFYIAVTFTALPSAWLIRKVGYKNGMALGMGVMMLAGLLFIPAAKTQIFALFLFAQLVMGAGQTLLQTAVNPYVVRIGPEESAAARVSVMGILNKGAGVIAPLVFSALILNSFKDRVGTELTSAQIDEMANGLVLPYLGMALFIGLLALVVKKSPLPELTDEDEGEQTNNKGQIKEALSHPNLAFGVVALFFYVAVEVIAGDTIGTFALSLGIESYGVMTSYTMICMVLGYTLGILTIPRFISQPKALMISAILGLILTIGIVFGDNESYAIANTLLVPFGGAQLPDTLLMIAFLGLANAIVWPAVWPLALSGMGKLTSTGSALLVMGIAGGAFGPLFWGLTSSVSSLGQQGGYMVMLPCYLFILFYAVKGYKMKSWK
>NC_010506.1|WP_012323952.1|1664997_1666134_+|DUF5009-domain-containing-protein
MEATQAKTPKRRLMSLDALRGFDMFWILGGEALFAGLLLWTGWHGWQWADAQMHHSQWHGFTFYDLIFPLFIFLSGVALGLSPKRLDKLPMAQRMPLYKHSVKRLLLLLFFGVLYNHGWGTGAPVAIDEVRYASVLGRIAFAWFFAAMLVWHTSFRTQVLVTLGILVLYGLAQLLIPVPGYGAGIFSPEGSINAYVDTHLLPGIAYQNRALDPEGILSTLPAIVNAMAGVFVGHFIVKEHAKGEWYKVVTMLIAGALVLGCGWLLNLVIPVNKDLWTSSFVLVTTGWSMILLAVFYAAVDVLKWQKAAFPFVVIGCNAIIIYLASSLIDWKYTAQSLFGGLVSAFPSSAQELMAAISLLLVQWLVLFWMYKRGVFVKV
>NC_010506.1|WP_012323951.1|1663762_1664890_+|N-acetylglucosamine-6-phosphate-deacetylase
MKQTFIAQQVFDGKDFHHNHPITVEDGHILAFDTVAGVNEVKLDGTLVSGFIDVQVNGGGGALLNSDTSVECIETIGAAHAKFGTTGFLPTLITDDIDVMRRAADAVAASLDKGSAGVLGVHFEGPHLSVPKKGVHPQSHIRRISDAELEVFCRNDLGTKVVTLAPENVSVEVIKALVAADVKVCLGHSNADYETVVAALEAGATGFTHLFNAMSPFGSREPGVVGAAIESRDAWCGLIVDGHHVHSAAARVAIYAKPKGKMMLVTDAMPPVGLDDEASFELFGTQVIRQGDRLNAVTGELAGCVLDMAGAVRNTVNMLGLSLDEAVRMASLYPAQFLGLDKQQGELRLGSKADFVLLNNDIFVDQTYIAGSRVF
>NC_010506.1|WP_012323950.1|1662797_1663700_+|ATPase
MIVNQTKENPLFIGIDGGGSKCRATIYSAEDGVIGTGVAGRANPLHGLSQTFESIQLSTELALKDAGMAIGDSKGLVAGLGLAGVNVPRLYQDIVNWEHPFADMYVTSDLHTACIGAHKGGEGAVIITGTGSCGYANVDGKFISLGGHGFALGDKGSGAWLGLKAAEQSLLHLDGFAEKTILTEKLLNHFKVNDALGIVENLAGKSSSVYAKLARIVLECANQQDEVAQAIVKEGAAYISELARKLFEINPPRFSMIGGLAEPLAPWLDKDVVTKLSPTLAPPELGATYFARQQFGCKAS
>NC_010506.1|WP_012323949.1|1659910_1662577_+|family-20-glycosylhydrolase
MKLKLLTAAITLVLATSGCSDNSKVNDNKPVTQTKAQSAEAMTQAVLNQLGETLDVKYRLLTNFPEGCPTEGVDGRCFSAQIDLTSKVDLSSADWAIYYSQMRPVQKVLSEEFEITRVKGDLHKITPTAAFTGLKAGQTKTIDFRGELWQLSEIDAMPNYYLISGDLTPALIKSTTVTHDPETGMELRPYVADFTDADTQYKRSDTDLIKWATPEVLFQANQGVELQTGAATNTIIPTPLKVEVTSENKPVSLGAGIKLVLNAQARGPIDAALKRLARLGVTESDKGLPVVLNTLKDSTQAGAYQLAITEQGIELTAADDAGFSYGLSSLTSLIDSQDLSINTMLVEDAPRYDFRGMHIDVSRNFHSKQLILDMLDQMAAYKLNKLHLHMADDEGWRLEIDGLPELTDIGSKRCHDISETTCLLPQLGSGPSADTQVSGYYSKADYIEILKYASARQIQVIPSMDMPGHSRAAIKSMDARYKKFMAEGNETAAKEYLLTDPDDKTVYSSIQYYDDNTLNVCLESTFHFVDKVIDEIAKLHKDAGQPLTLYHIGADETAGAWLESPQCKAFVANNVQGVTSFDELGAYFVERVSNTLNDKGIEPAGWSDGMSHTRPDKMPKKSQSNLWDVISHGGHNRAHEQVNLGWDAVLGTPEMLYFDFPYEADPKEHGYYWASRNTNERKLYGFMPDNLPANAEQWTDIQGQPFEVDDTEKLDDSGKRISGPIAQGKGFAGLQGQIWSETLRSDELVEYMTFPRLLILAEKAWHKASWEVPYQYTGAVYNQTTEFFTQEMRASQAKQWAVIANTLGQKELIKLDMAGIDYRVPTVGAHIHEGELHTNIIYPGLKIEYRIDGGKWEAFKSPVAVKGMVEVRALAADGTRKGRTLEVK
>NC_010506.1|WP_012323948.1|1658392_1659886_+|methyl-accepting-chemotaxis-protein
MNSLSIKVQIGLAGALFVVVSVLFSLAYMVEANRLEANFNEYKSNTLASLEVTLAQPVFYYDFEQIDAVLSVMLASEKIYEITIKDHRGKMLGDSKQSTPVDPKAVTSDKLAFTTNDKPTGELTVSFSSAPITEALNQLKLSYFFQALVILLLSQLFIFIILKRLVITPLVHVSAVMEEIASGDGDLSHKLPVESNDEIGQLATAFNGFVAKIHGTISKVNETSELILQDASSLGDLSKSNNHRVQSQLKETEAAVAAVTQLNSSANEVAKNASSTAEATGLADKEVDNSQQQFDLGLEVSNRLADELSRSVVAVQELQQETQRIDEVVVVINAIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQQATGEIQKMIQQVQTGVDETVSVMQASQTLSAEAVSHSEEIKLILSNVTSLVSNISNMNLEVAEAAGEQTYVTDDISKNLNDLATVSGSASLDSEQLAESSERLFHQGERLRALVGSFRLQG
>NC_010506.1|WP_012323947.1|1657524_1658400_+|transporter-substrate-binding-domain-containing-protein
MRFMLRLRIKLLLISLLSVFCLTPNAYSETLVTTIPQSWQLNLLKEALSRVETQYDISMLDTEMNQKRKVEEALAGSIDIFWSMTSQQLEAVVLPVRIPIFKGLLGNRLLIIRSDEQQRFIDVKSRDDFLQFYAGQNRYWPDALILEENGLPLITSYKYKNLYPMLEGGRFDYLALGAQEIWQELDKNPDPNLKVDSAILLQYRSPAYFFISPEKPLLAKDLKKGLESMIADGSFDQLFNKELEIDALYEQAQFSKRRIIRLQTPGLSSLTPVTRDELWLDLFNMEGKGDE
>NC_010506.1|WP_012323946.1|1656090_1656984_-|sulfite-exporter-TauE/SafE-family-protein
MNLNKNKKITLISRPLFIFIVLATLWSTWLLQFPHPLELFGDYLHYLFLGITGAIFANSTGAGGGVIFIPVFNSLNFTNEQSISTSFVIQCFGMTAGALTWWLHFTHQKQAQQGRLLVKLIFICIPLSVAGIWTTHIFEIQAPGSLEHSFSLFSIALGLGIIYSCFALKNSDANHTLSRYEVLQLGFITYLGGIITAWLSVGVGEIIVIYLLLKKVTPSLAIAVGVIVTAFTVWSVSPIYLSEQSDAYFKVILFAGPGAIMGGILAKKLALYLPVKGLKIFFAGWIILSGVTMLVVT
>NC_010506.1|WP_012323945.1|1655278_1655995_-|SapC-family-protein
MTNISPLNSSKHLNTYIKESKDFSRFAAQSLIPIVVQEFAVLATEFPIVFVKNAESGQFTPIAMMGIKNNFNLYCQTKNWEASVTPIGFSKAPLSLMQTSKESDEVMVFIDEDSELVTSDEGNKLFDDSGEQTEYLKKRSNALLDLASFTQQTSAITQYFAELNLLAPKQLTVKLNSDSPEVNIDGVYIIDEQILNELNDEAFLTLKSKGLMPLIYAHLTSLHQIGRLITKQNQLDKA
>NC_010506.1|WP_012323944.1|1653611_1655135_+|tryptophan-7-halogenase
MKIKRIAIVGAGTAGWLAANHLGSELSADQDVEITVIESKDVPTIGVGEGTVPYIMNSLKRFGISEAELLYSCDTTFKQGIKFVNWLDSGSRGDNFYYHPFDVPYPSGFDVSPYWVAHGGKRPFDDVGIQARICELGLAPKRKSSGEYEGALTYAYHFNALKFAQLLAKNAQKRFNVTHQFATVVGAKKAENGDITHLITKDDTELVFDFYVDCSGFSSILIDKELKVPFVSKADELLTDSVLVQQVPLKDEDELPPYTTATAHSAGWIWDIPLTTRRGTGFVYSSRHMSDEQALSEYADYLGVEQGTISPRKLPMEIGYREAFWSQNCVALGLAQGFVEPLEATSILVTDFSAELLARNFPRNTSDIEALIPHYNKVVTYVWERVVDFIKLHYCISDREDSQFWLDNRKEDTFSDELKQRLTKFKVSTPKQSDFFSKFDLFNDKNFLYVLYGMEFKTKAISISAKEIEHCSMLLQSNDNLVKTAADELLSHKSWLLGLKAAMSPNG
>NC_010506.1|WP_012323954.1|1669956_1670508_+|cytochrome-b
MFRNTEASYGLASILFHWVSALAVISLFVLGYWMVDLTYYSTWYKTAPYLHKSFGLLLLLLTLIRLVWKVVNPKPKADPNHKRWEQKAGHIAHLAIYLLLIVIMFSGYLISTADARGIWVFDWFEVPGFGSFIDGQADVAGLIHQYAAYSLMGLTLIHALGAIKHHVIDKDSTLLRMIKVIKS
>NC_010506.1|WP_012323955.1|1670581_1671157_+|YceI-family-protein
MKKHLLVTALTASLFLGNAAQAADYIVDTDGAHASIQFRVSHLGYSYVAGRFNDFKGDFSFDANKVADAKVNMVINTTSIDSNHAERDKHLRSADFLNTAKFPQATFTSTSVEDKGNGDFILNGNFTLNGVTKPLAISATTVGEGQDPWGGYRVGFTGTTEFALKDYDIKMDLGPASSHVKLDLVVEGIKQ
>NC_010506.1|WP_012323956.1|1671491_1671770_-|oxidative-damage-protection-protein
MARTVNCVYLKKEAEGLGFQLYPGPLGKRIFDNVSKEAWGLWQAKQTMLINEKKLNMMNVEDRGFLETQMVNFLFEGKDVEIEGYVPQKDDD
>NC_010506.1|WP_049774448.1|1671772_1672858_-|A/G-specific-adenine-glycosylase
MPVTEPIEANPDTFSSRIITWYDKFGRKHLPWQLEKTPYKVWVSEIMLQQTQVSTVIPYYLKFMERFPSIGALADAPQDEVLHYWTGLGYYARARNLHKSAQIIRDEFQGEFPTNFDNVLALPGIGRSTAGAVLSLSLGQHHAILDGNVKRVLARHDAIQGWPGQKAVENQLWSLTDSLTPKQDVQKYNQAMMDMGATICTRSKPSCDKCPVAIDCEAQLIGRQTEFPGKKPKKVTPEKSAWMLVIAKGEEVILEKRPPAGIWGGLWCFPQFSSREELDQYLQIKGIKVSQEELLLGFRHTFSHFHLDITPVVVNLDNQSDNQIMEDKPSVWYNLPNPPKVGLAAATERILAGLGSVLIKE
>NC_010506.1|WP_012323958.1|1673091_1673808_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSDVTTAEFNEEGKYLRKVRSFVLREGRLTKGQATAMEEQWPLMGLDYSPEPLDLAEIFGREADTVLEIGFGMGASLVEMAKASPELNFIGIEVHKPGVGACLSVAAEAGVTNLRVFHHDAIEVLENSIVPSSLARVQLFFPDPWHKKRHHKRRIVQPEFAQTIRNSLKLGGVFHLATDWENYSEHMLEVMNAAPGYKNQSTTGDVVERPDHRPLTKFEARGHRLGHGVWDIMFERID
>NC_010506.1|WP_012323959.1|1673861_1674185_+|YggL-family-protein
MATRSRRLRKKLRVDEFQEFGFDINWTFNDSVSEEQIDNLVDQFIDEVIEPRKLGFHGGGHKEWEGIIATQELGKCSEEDRTAVSDFWKGKEVSDLVVSELYDIWWG
>NC_010506.1|WP_012323960.1|1674184_1675099_+|glutaminase-B
MPEQALLEQVVDKVRPLLGQGKVADYIPALASVNPKKLGIAVTTIDGTTIGAGDYLEPFSIQSISKVFSLTLALTLYEEHEIWSRVGKEPSGQSFNSLVQVELERGVPRNPFINAGALIIADLIQSRLGAPKHRMLEIVRELSGNPSILYDKVVAASEYEHSARNAAIAYLMKSFGNFNNDVDTVLHSYFHYCAMRMNCADLSKAMLYLANRGKSLSGQQLISPVQTRQMNALLATSGLYDGAGEFAYRVGMPGKSGVGGGIIAVIPGDMSVCVWSPELDLNGNSLAGTAALEEFCQRLGRSIF
>NC_010506.1|WP_012323961.1|1675327_1676158_+|YggN-family-protein
MRKLATLLGITAAIFATTMTSVQAHEDHKSNSYSDHNSECEVTLNYDVAVEPKKLTVTEGSAEVYRIEMDQLFVEGKPVSLNRSQKKLLTQYSDEVSTQVPEVIGLVHDAVGIASSAASMALTPLLGDAAGAKLDEMMDGLEERIEKVAYQNGDKFYLGATHSSLEDTFGEEFEQELEQLVKNSIGSMMVNIGSQMLAGDGESFEQSMEAFATKMENVGQDIELQMESQAQSLEDRADKMCERFRYLVELEQKLRAEVPELAKYPLIDAPQKELLE
>NC_010506.1|WP_012323962.1|1676496_1677438_+|LysR-family-transcriptional-regulator
MLELLEPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQLLYTQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMTTHPELELQVSLLDHKVDVVSEGLDLLLTMSEQLPLGMVARPLMKCQFLLVASPDYIEKHGQPDRPEQLVDHNCLVYQGEWHEHSVWQFKQGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVYLASYLLEDEIAKGTLVPLLEDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFIKGHIGSPPYWDAPCAELYAKRK
>NC_010506.1|WP_012323963.1|1678095_1679940_-|DUF885-domain-containing-protein
MPIKTKISLVALTLTTLIGGCGVSSTPPSEPQSIENAVVIISESEKANALFETIFMDNVMASPISQTQLGIKKDYGKWDERGEVADAKELALTQAHLKQLKQIDVSKLDDQTSLSYGLLKQRLENEVADNRWRYYSYPVNQMYGGHSMLPSFLINQHQVGTVEDANAYISRLNGIPKYLKQLEESLEARAQHGIIAPKFVFPHVLSDSKNIITGAPFDSGKDSALWADIKRKVDGLEIDNSKKETLLKEAKHALISQVQPAYKKLVTYLTQLETQADTRDGVWKFPQGEEFYNNALARTTTTDLTADQIHQLGLDEVVRIHNEMRVIMKKVGFKGDLQAFFKFMREDKQFYYPATDEGRDAYLKDATALIDNMSSRLDEVFNVKPKAPMIVKRVEAFREKSAGKAFYNQSSPDGSRPGTYYANLYDMDAMPKYQMEALAYHEGTPGHHMQIAIAQELEGIPKFRKFGGYTAYIEGWGLYSEFFPKEMGLYSDPYSDFGRLAMELWRSCRLVVDTGIHAKKWTREESINYYVNNTPNAKSDAVKMVERHVVMPSQATAYKVGMLKILDLRAKAKQSLGEKFDIREFHTLVLKNGPLPLDVLEDQVDLWVSEKKRG

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Crispr_ID: NC_010506_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010506_4

1681200-1681328

Orphan

Consensus_repeat	Method
ATATGGATGTACAAGCTTAATGGAGGAAGGGTAAGCATTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010506_4

>merge|NC_010506|4|1681200-1681328|CRISPRCasFinder
ATATGGATGTACAAGCTTAATGGAGGAAGGGTAAGCATTAGCGAATACCTCCAACACATAGAGCACTTTTGACTATACAAAGCCGAGGTATATGGATGTACAAGCTTAGTGGAGGAAGGGTAAGCATTA

>NC_010506|4|4|1681200-1681328|CRISPRCasFinder
ATATGGATGTACAAGCTTAATGGAGGAAGGGTAAGCATTA	GCGAATACCTCCAACACATAGAGCACTTTTGACTATACAAAGCCGAGGT
ATATGGATGTACAAGCTTAGTGGAGGAAGGGTAAGCATTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010506.1\|WP_012323969.1\|1683448_1684267_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NC_010506.1\|WP_041418012.1\|1684397_1685099_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143497
NC_010506.1\|WP_012323959.1\|1673861_1674185_+\|YggL-family-protein	unknown	unknown	gnl\|CDD\|183281
NC_010506.1\|WP_012323973.1\|1687546_1688578_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NC_010506.1\|WP_012323956.1\|1671491_1671770_-\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NC_010506.1\|WP_012323966.1\|1682057_1682492_-\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NC_010506.1\|WP_012323955.1\|1670581_1671157_+\|YceI-family-protein	unknown	unknown	gnl\|CDD\|179642
NC_010506.1\|WP_012323962.1\|1676496_1677438_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NC_010506.1\|WP_012323968.1\|1682842_1683391_-\|YggT-family-protein	unknown	unknown	gnl\|CDD\|376765
NC_010506.1\|WP_012323975.1\|1689124_1689685_-\|YqgE/AlgH-family-protein	unknown	unknown	gnl\|CDD\|234694
NC_010506.1\|WP_012323967.1\|1682555_1682843_-\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NC_010506.1\|WP_012323971.1\|1685135_1686173_+\|type-IV-pilus-twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|225364
NC_010506.1\|WP_049774448.1\|1671772_1672858_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NC_010506.1\|WP_012323954.1\|1669956_1670508_+\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
NC_010506.1\|WP_012323961.1\|1675327_1676158_+\|YggN-family-protein	unknown	unknown	gnl\|CDD\|378556
NC_010506.1\|WP_012323958.1\|1673091_1673808_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NC_010506.1\|WP_012323974.1\|1688637_1689057_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NC_010506.1\|WP_012323972.1\|1686200_1687313_+\|PilT/PilU-family-type-4a-pilus-ATPase	unknown	unknown	gnl\|CDD\|227341
NC_010506.1\|WP_012323960.1\|1674184_1675099_+\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NC_010506.1\|WP_012323963.1\|1678095_1679940_-\|DUF885-domain-containing-protein	unknown	unknown	gnl\|CDD\|377577

Protein	Function_ID	Function_description	E-value
NC_010506.1\|WP_012323969.1\|1683448_1684267_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	5.24414e-104
NC_010506.1\|WP_041418012.1\|1684397_1685099_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143497	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.	3.803e-126
NC_010506.1\|WP_012323959.1\|1673861_1674185_+\|YggL-family-protein	gnl\|CDD\|183281	PRK11702, PRK11702, hypothetical protein; Provisional.	7.21686e-64
NC_010506.1\|WP_012323973.1\|1687546_1688578_+\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	4.23792e-154
NC_010506.1\|WP_012323956.1\|1671491_1671770_-\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	1.80941e-56
NC_010506.1\|WP_012323966.1\|1682057_1682492_-\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	1.42779e-61
NC_010506.1\|WP_012323955.1\|1670581_1671157_+\|YceI-family-protein	gnl\|CDD\|179642	PRK03757, PRK03757, YceI family protein.	7.35873e-124
NC_010506.1\|WP_012323962.1\|1676496_1677438_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.33007e-77
NC_010506.1\|WP_012323968.1\|1682842_1683391_-\|YggT-family-protein	gnl\|CDD\|376765	pfam02325, YGGT, YGGT family. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown.	4.59779e-10
NC_010506.1\|WP_012323975.1\|1689124_1689685_-\|YqgE/AlgH-family-protein	gnl\|CDD\|234694	PRK00228, PRK00228, YqgE/AlgH family protein.	4.71012e-85
NC_010506.1\|WP_012323967.1\|1682555_1682843_-\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	2.89451e-52
NC_010506.1\|WP_012323971.1\|1685135_1686173_+\|type-IV-pilus-twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_010506.1\|WP_049774448.1\|1671772_1672858_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NC_010506.1\|WP_012323954.1\|1669956_1670508_+\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	1.87962e-57
NC_010506.1\|WP_012323961.1\|1675327_1676158_+\|YggN-family-protein	gnl\|CDD\|378556	pfam11101, DUF2884, Protein of unknown function (DUF2884). Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.	4.04997e-83
NC_010506.1\|WP_012323958.1\|1673091_1673808_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	3.10969e-107
NC_010506.1\|WP_012323974.1\|1688637_1689057_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.19717e-71
NC_010506.1\|WP_012323972.1\|1686200_1687313_+\|PilT/PilU-family-type-4a-pilus-ATPase	gnl\|CDD\|227341	COG5008, PilU, Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_010506.1\|WP_012323960.1\|1674184_1675099_+\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NC_010506.1\|WP_012323963.1\|1678095_1679940_-\|DUF885-domain-containing-protein	gnl\|CDD\|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0

>NC_010506.1|WP_012323963.1|1678095_1679940_-|DUF885-domain-containing-protein
MPIKTKISLVALTLTTLIGGCGVSSTPPSEPQSIENAVVIISESEKANALFETIFMDNVMASPISQTQLGIKKDYGKWDERGEVADAKELALTQAHLKQLKQIDVSKLDDQTSLSYGLLKQRLENEVADNRWRYYSYPVNQMYGGHSMLPSFLINQHQVGTVEDANAYISRLNGIPKYLKQLEESLEARAQHGIIAPKFVFPHVLSDSKNIITGAPFDSGKDSALWADIKRKVDGLEIDNSKKETLLKEAKHALISQVQPAYKKLVTYLTQLETQADTRDGVWKFPQGEEFYNNALARTTTTDLTADQIHQLGLDEVVRIHNEMRVIMKKVGFKGDLQAFFKFMREDKQFYYPATDEGRDAYLKDATALIDNMSSRLDEVFNVKPKAPMIVKRVEAFREKSAGKAFYNQSSPDGSRPGTYYANLYDMDAMPKYQMEALAYHEGTPGHHMQIAIAQELEGIPKFRKFGGYTAYIEGWGLYSEFFPKEMGLYSDPYSDFGRLAMELWRSCRLVVDTGIHAKKWTREESINYYVNNTPNAKSDAVKMVERHVVMPSQATAYKVGMLKILDLRAKAKQSLGEKFDIREFHTLVLKNGPLPLDVLEDQVDLWVSEKKRG
>NC_010506.1|WP_012323962.1|1676496_1677438_+|LysR-family-transcriptional-regulator
MLELLEPIAIFTHVARAGSFSAAARKLGISKSKVSTQVADLEHKLGVQLIQRTTRSLSLTEAGQLLYTQGEELLRDADQAVASVHNLNDATRGVLKVGISQSFGTMHIIPALPEFMTTHPELELQVSLLDHKVDVVSEGLDLLLTMSEQLPLGMVARPLMKCQFLLVASPDYIEKHGQPDRPEQLVDHNCLVYQGEWHEHSVWQFKQGDDYCEIGVSGNFRVDNAPALKSAAVSGLGVVYLASYLLEDEIAKGTLVPLLEDWQLTHHLPLQAVYPRRKHLAPKVSAFIDFIKGHIGSPPYWDAPCAELYAKRK
>NC_010506.1|WP_012323961.1|1675327_1676158_+|YggN-family-protein
MRKLATLLGITAAIFATTMTSVQAHEDHKSNSYSDHNSECEVTLNYDVAVEPKKLTVTEGSAEVYRIEMDQLFVEGKPVSLNRSQKKLLTQYSDEVSTQVPEVIGLVHDAVGIASSAASMALTPLLGDAAGAKLDEMMDGLEERIEKVAYQNGDKFYLGATHSSLEDTFGEEFEQELEQLVKNSIGSMMVNIGSQMLAGDGESFEQSMEAFATKMENVGQDIELQMESQAQSLEDRADKMCERFRYLVELEQKLRAEVPELAKYPLIDAPQKELLE
>NC_010506.1|WP_012323960.1|1674184_1675099_+|glutaminase-B
MPEQALLEQVVDKVRPLLGQGKVADYIPALASVNPKKLGIAVTTIDGTTIGAGDYLEPFSIQSISKVFSLTLALTLYEEHEIWSRVGKEPSGQSFNSLVQVELERGVPRNPFINAGALIIADLIQSRLGAPKHRMLEIVRELSGNPSILYDKVVAASEYEHSARNAAIAYLMKSFGNFNNDVDTVLHSYFHYCAMRMNCADLSKAMLYLANRGKSLSGQQLISPVQTRQMNALLATSGLYDGAGEFAYRVGMPGKSGVGGGIIAVIPGDMSVCVWSPELDLNGNSLAGTAALEEFCQRLGRSIF
>NC_010506.1|WP_012323959.1|1673861_1674185_+|YggL-family-protein
MATRSRRLRKKLRVDEFQEFGFDINWTFNDSVSEEQIDNLVDQFIDEVIEPRKLGFHGGGHKEWEGIIATQELGKCSEEDRTAVSDFWKGKEVSDLVVSELYDIWWG
>NC_010506.1|WP_012323958.1|1673091_1673808_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSDVTTAEFNEEGKYLRKVRSFVLREGRLTKGQATAMEEQWPLMGLDYSPEPLDLAEIFGREADTVLEIGFGMGASLVEMAKASPELNFIGIEVHKPGVGACLSVAAEAGVTNLRVFHHDAIEVLENSIVPSSLARVQLFFPDPWHKKRHHKRRIVQPEFAQTIRNSLKLGGVFHLATDWENYSEHMLEVMNAAPGYKNQSTTGDVVERPDHRPLTKFEARGHRLGHGVWDIMFERID
>NC_010506.1|WP_049774448.1|1671772_1672858_-|A/G-specific-adenine-glycosylase
MPVTEPIEANPDTFSSRIITWYDKFGRKHLPWQLEKTPYKVWVSEIMLQQTQVSTVIPYYLKFMERFPSIGALADAPQDEVLHYWTGLGYYARARNLHKSAQIIRDEFQGEFPTNFDNVLALPGIGRSTAGAVLSLSLGQHHAILDGNVKRVLARHDAIQGWPGQKAVENQLWSLTDSLTPKQDVQKYNQAMMDMGATICTRSKPSCDKCPVAIDCEAQLIGRQTEFPGKKPKKVTPEKSAWMLVIAKGEEVILEKRPPAGIWGGLWCFPQFSSREELDQYLQIKGIKVSQEELLLGFRHTFSHFHLDITPVVVNLDNQSDNQIMEDKPSVWYNLPNPPKVGLAAATERILAGLGSVLIKE
>NC_010506.1|WP_012323956.1|1671491_1671770_-|oxidative-damage-protection-protein
MARTVNCVYLKKEAEGLGFQLYPGPLGKRIFDNVSKEAWGLWQAKQTMLINEKKLNMMNVEDRGFLETQMVNFLFEGKDVEIEGYVPQKDDD
>NC_010506.1|WP_012323955.1|1670581_1671157_+|YceI-family-protein
MKKHLLVTALTASLFLGNAAQAADYIVDTDGAHASIQFRVSHLGYSYVAGRFNDFKGDFSFDANKVADAKVNMVINTTSIDSNHAERDKHLRSADFLNTAKFPQATFTSTSVEDKGNGDFILNGNFTLNGVTKPLAISATTVGEGQDPWGGYRVGFTGTTEFALKDYDIKMDLGPASSHVKLDLVVEGIKQ
>NC_010506.1|WP_012323954.1|1669956_1670508_+|cytochrome-b
MFRNTEASYGLASILFHWVSALAVISLFVLGYWMVDLTYYSTWYKTAPYLHKSFGLLLLLLTLIRLVWKVVNPKPKADPNHKRWEQKAGHIAHLAIYLLLIVIMFSGYLISTADARGIWVFDWFEVPGFGSFIDGQADVAGLIHQYAAYSLMGLTLIHALGAIKHHVIDKDSTLLRMIKVIKS
>NC_010506.1|WP_012323966.1|1682057_1682492_-|DUF4426-domain-containing-protein
MLKAILSALILSLALVGNVSAEQKQKIGNFDIHYVALSSTFLTPSIAKSYGIKRSSYTGIINISVLDTSQEGNPAVPVQISGVANNLLDARITLKFREIREGEAIYYIAEVPYRDDQEINFNIAIQYAKKLNTQLKFKQKFYVE
>NC_010506.1|WP_012323967.1|1682555_1682843_-|YggU-family-protein
MAPVIKQQDDLLLNLYIQPKASRDQIVGVHGEELKIAITAPPVDGKANAHLIKYLSKAFKVPKGDINILKGEQGRHKQVKVISPRVIPENISSQL
>NC_010506.1|WP_012323968.1|1682842_1683391_-|YggT-family-protein
MNALSFLVSTIFDLYLMVVILRIWLQLAKADFYNPFSQFIVKATHPIVAPMRRVLPSIGAFDTASVVLALLVVTAKFVVLSLIAGAAINIPTILLIAVVSVFKQAGVLLFWMLIIRAILSWVSQGHNPIEMVMGQLTEPLLSPIRRILPPMGGLDLSLLIMMILLNFINILLAQYVPFWANV
>NC_010506.1|WP_012323969.1|1683448_1684267_-|pyrroline-5-carboxylate-reductase
MLEKKLCFIGAGNMTRSIASGLVKSGYTSSLIHATNPSVEKLDALKRDLNIKVSHDNLTAAKDADVIILSVKPHFMQAVCEELSVLDLSQKLIITIAAGITANRYKDYFAQEITLIRTMPNTPTQIGVGMTGLFADGDISQEQKLICEQLMKSGGEVLWVETEEELNQVIALAGSSPAYFFLFMESMLAAAKDSGLDETKARLLVQQAALGAAQMVIQNPELTTAQLRENVTSKGGTTAQAINAFESGNIRGLVKQAMDDCVARAQEMAKQY
>NC_010506.1|WP_041418012.1|1684397_1685099_-|YggS-family-pyridoxal-phosphate-dependent-enzyme
MTTIADRLADAQHRIIQAAQISSRNSDEIQLLAVSKTKPNTDIIAAYTAGQRHFGENYVQEGEAKVNALKSSCPEIHWHFIGPLQSNKSKIVASLFDWMHTLSREKIAQRLNEQRPDTLQPLNVCIQVNISQESSKSGATVDEVHSLASSISKLPKLKLRGLMAIPTATQDVLLQKAEFKKLQELYLNLQATYPDIDTLSMGMSNDLEQAIEHGSTMVRIGSAIFGERDISGN
>NC_010506.1|WP_012323971.1|1685135_1686173_+|type-IV-pilus-twitching-motility-protein-PilT
MEITELLAFSVKHKASDLHLSAGVSPMIRVDGEVRKINLPALDHQGVHGLVYDIMNDKQRKDYEEHLEIDFSFEVPNLARFRVNAYNQSRGAAAVFRTIPSDILSLEQLGAPEIFKKISDFPRGLVLVTGPTGSGKSTTLAAMIDYINDNRHEHILTIEDPIEFVHQNKQCLINQREVHRHTHSFNAALRSALREDPDVILVGEMRDLETIRLAMTAAETGHLVFGTLHTTSAAKTIDRVVDVFPEGEKGMVRTMLSESLQAVISQTLIKKVGGGRVAAHEIMMGTPAIRNLIREDKVAQMYSAIQTGMAHGMQTLDQCLQNLVNRGQISREDAQHKSANKQTTF
>NC_010506.1|WP_012323972.1|1686200_1687313_+|PilT/PilU-family-type-4a-pilus-ATPase
MDVRPFLKIMVERKASDLFITAGFPPSAKIDGELRPLGEHSFSAAQSLEFVESLMTDVQKEEFHNTRECNFAFAAKELGRFRVSAFWQRESPGCVMRRIETNIPDADDLKLPPILKDLVMSKRGLIIMVGGTGTGKSTSLASLVGYRNANARGHILTIEDPVEFVHDHRKSIITQREVGIDTESFDAALKSSLRQAPDVILIGEIRTQETMEFALAFAETGHLCMATLHANNANQALDRIMNLVPESKHQQLLFDLSLNLRGIVAQQLVPKADGLGRRAAIEILINTPRVSSLIAKNELHSLKETMAKSNEQGMQTFDQALLNLYVEGEISYADALHHADSPNDLRLMIKLRSSETGGSGFMEGVTLDLD
>NC_010506.1|WP_012323973.1|1687546_1688578_+|ferrochelatase
MAKYSGLSKDVAHTKRGKTGVVLVNLGTPDAPTASAVRCYLAEFLSDPRVVEIPKLVWMLILHGIILRIRPAKSAALYKQVWTDKGSPLMEITRQQTEKLASYLKDNAGELAGEQDISVEFCMRYGNPSVSETLKQMHSEGVDKMVVLPLYPQYAAPTTGSVFDAIAKELTSWRYLPSLHFINTYHQHPDFIHALVESIKRDFASNGQPQKLVMSYHGMPERNLHLGDPYYCFCMQTTKLVVEQLGLNEDQYIATFQSRFGKAKWLTPYTDATMESLPGQDIKDIAVVCPAFSADCLETLEEIAEENRLIFEEAGGQQYRYIPALNDDELHIKMMANLVKPYL
>NC_010506.1|WP_012323974.1|1688637_1689057_-|Holliday-junction-resolvase-RuvX
MSSQTVLGFDYGTKSIGIAIGQSLTGSANPLLSIKAVDGIPKWEEIGMLIEEWRPDLVVVGLPLNMDGSEQEMTQRAKKFANRISGRFGVKVETQDERLTTADAKTRLFEMGGYKALTKGQVDAMSAVLIVESYFESLY
>NC_010506.1|WP_012323975.1|1689124_1689685_-|YqgE/AlgH-family-protein
MNSLQNHLLIAMPSLQDTFFERSVIYLCEHDEKGAMGLMINRPIGIDVNELLKQMELDEEPDPITSLGSAVLIGGPVNQERGFVLHTPQTNWNNSQSLTDEIMLTTSRDVLTSLGTDAAPENFIVTLGYAGWSKDQLEQELAENTWLSIPATKELLFDIGFNDRWQQATESLGFDIWQLSNQSGHA

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Crispr_ID: NC_010506_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010506_5

1707182-1707317

Orphan

Consensus_repeat	Method
TGAGTTTAAGGTTGAATTTAATGGTGACAGGGGATTGTCATGATTAGTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010506_5

>merge|NC_010506|5|1707182-1707317|CRISPRCasFinder
TGAGTTTAAGGTTGAATTTAATGGTGACAGGGGATTGTCATGATTAGTGATTTTTTTATTAGCTTGGACCTAAATTTGCTTGGGTCTGAGTTTAAGGTTGAATTTAATGGTGACAGGGGATCGTCATGATTAGTGA

>NC_010506|5|5|1707182-1707317|CRISPRCasFinder
TGAGTTTAAGGTTGAATTTAATGGTGACAGGGGATTGTCATGATTAGTGA	TTTTTTTATTAGCTTGGACCTAAATTTGCTTGGGTC
TGAGTTTAAGGTTGAATTTAATGGTGACAGGGGATCGTCATGATTAGTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010506.1\|WP_012323989.1\|1701534_1703058_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NC_010506.1\|WP_012324005.1\|1721247_1724886_+\|rRNA-(guanine-N1)-methyltransferase	unknown	unknown	gnl\|CDD\|225953
NC_010506.1\|WP_012323993.1\|1705017_1705380_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012323986.1\|1697239_1698016_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012324001.1\|1715444_1715624_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012323991.1\|1704328_1704697_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NC_010506.1\|WP_012323990.1\|1703088_1703892_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270289
NC_010506.1\|WP_012323992.1\|1704799_1705015_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012324003.1\|1716520_1717633_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_010506.1\|WP_012323997.1\|1711232_1712381_-\|L-threonine-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NC_010506.1\|WP_012323998.1\|1712745_1713897_+\|porin	unknown	unknown	gnl\|CDD\|238208
NC_010506.1\|WP_012324004.1\|1717632_1720740_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_010506.1\|WP_012323999.1\|1713982_1714462_-\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239824
NC_010506.1\|WP_012323994.1\|1705933_1707097_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_010506.1\|WP_012323987.1\|1698080_1699712_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|214515
NC_010506.1\|WP_041417525.1\|1715782_1716232_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NC_010506.1\|WP_012324000.1\|1714559_1715033_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NC_010506.1\|WP_041417524.1\|1699742_1701248_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|214515
NC_010506.1\|WP_012323996.1\|1710718_1710931_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NC_010506.1\|WP_012323985.1\|1696173_1697184_+\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710

Protein	Function_ID	Function_description	E-value
NC_010506.1\|WP_012323989.1\|1701534_1703058_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	4.83968e-125
NC_010506.1\|WP_012324005.1\|1721247_1724886_+\|rRNA-(guanine-N1)-methyltransferase	gnl\|CDD\|225953	COG3419, PilY1, Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion].	1.65341e-32
NC_010506.1\|WP_012323999.1\|1713982_1714462_-\|YbaK/EbsC-family-protein	gnl\|CDD\|239824	cd04332, YbaK_like, YbaK-like. The YbaK family of deacylase domains includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, ProX, and PrdX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express an INS homolog in trans (e.g. YbaK, ProX, or PrdX).	1.58074e-30
NC_010506.1\|WP_012323990.1\|1703088_1703892_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	gnl\|CDD\|270289	cd13571, PBP2_PnhD_1, Substrate binding domain of uncharacterized ABC-type phosphonate-like transporter; contains the type 2 periplasmic binding fold. This subfamily includes putative periplasmic binding components of an ABC transport system similar to alkylphosphonate binding domain PnhD. These domains are found in PnhD-like proteins that are predicted to function as initial receptors in hypophosphite, phosphonate, or phosphate ABC transport in archaea and eubacteria. They belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.84682e-54
NC_010506.1\|WP_012324003.1\|1716520_1717633_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.87607e-79
NC_010506.1\|WP_012323997.1\|1711232_1712381_-\|L-threonine-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NC_010506.1\|WP_012323998.1\|1712745_1713897_+\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	1.42086e-19
NC_010506.1\|WP_012324004.1\|1717632_1720740_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_010506.1\|WP_012323991.1\|1704328_1704697_+\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	5.05424e-25
NC_010506.1\|WP_012323994.1\|1705933_1707097_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.60558e-69
NC_010506.1\|WP_012323987.1\|1698080_1699712_-\|alkaline-phosphatase	gnl\|CDD\|214515	smart00098, alkPPc, Alkaline phosphatase homologues.	3.20249e-142
NC_010506.1\|WP_041417525.1\|1715782_1716232_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.46021e-08
NC_010506.1\|WP_012324000.1\|1714559_1715033_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	7.55721e-46
NC_010506.1\|WP_041417524.1\|1699742_1701248_-\|alkaline-phosphatase	gnl\|CDD\|214515	smart00098, alkPPc, Alkaline phosphatase homologues.	2.25531e-140
NC_010506.1\|WP_012323996.1\|1710718_1710931_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	4.52784e-36
NC_010506.1\|WP_012323985.1\|1696173_1697184_+\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	5.79494e-159

>NC_010506.1|WP_012323994.1|1705933_1707097_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MPAQTVSKLKWCTLFIIGLQLAACGDAPAPKQAMLPSVIVNTAKTEEIQSKTEIVGRTHASEDVVIKSQIQGQLLKRTFIEGDDIDKGDLLFEIDPSTFEAELAQHKAVLKQALASRDVAVMNWERGSRLLPDGMISAQDMDELTTRKLTTAAGVVQAEAAVKGSELQLSYTKIYAPISGRISNSKVSTGDIISSNSEMANLVQLQPMWVNFQVAERALINARESFAKAAKKEIEISDIIIGLRLPNGSMFSETGYVDFVSNRVDAATGTLPIRATFKNENKLMLPGMFVTLIIESPVKENALLIPQASVQEDQQGRFVMVLNDKDEVEKRIVELGERFGIDWRVLSGLKDGERIVVDGLQKIRPGIQVKAVEQEVIPFKESQTAPK
>NC_010506.1|WP_012323993.1|1705017_1705380_-|hypothetical-protein
MTAISHVYNYTVRCPHIKDPAHPTTWQNHVEFNQSCEIGLNRLTKWHGRSGHRVFEIDGFVVREADTESAYFSMQTNRLKGDGHAIVTFKIFMDDDTKDTSVEEIMQYLIEDYGKKIADV
>NC_010506.1|WP_012323992.1|1704799_1705015_-|hypothetical-protein
MKKLLNLTIAFAFIINLSACAELKETGRAIGQGTKEVTTDIGHATRDATKAIGHASRDAVKSVNDDLSKKD
>NC_010506.1|WP_012323991.1|1704328_1704697_+|acyl-CoA-thioesterase
MKYYSRRFIKPEHLNPANLLFGGQLLSWIDEEAAIFAGCQMKSQQLVTKLISEINFMTPARQGDVIEFGLELISAGSSSITVRCEVRSKVSHLPIVTINQMVFVNVDEKGLPKPHGIRANAA
>NC_010506.1|WP_012323990.1|1703088_1703892_-|PhnD/SsuA/transferrin-family-substrate-binding-protein
MNKLTLTSCMAGNADPFVKKLTEYLATKLQLPMTSTLDISWQEREQKFDNGEIQICWICGLPYAWKADSTGSEIELLATPVLEASRYQNKAVYYSDIMVPAESDIQTFDDLQGASWAYNEPNSHSGSYLMRSHLAALGLDSRYLGKVIESGAHQESIKMLLNRDIDASAIDSWVFELELANDPSLATRLRVIETLGPSGFPPFIISKQVPEHLRQTLRSAMLAMDKDPLGREILDSVKISHFTQNGDRDYDSIREMAKLAQQVEWSK
>NC_010506.1|WP_012323989.1|1701534_1703058_+|BCCT-family-transporter
MNRKPEHLNTSPAPIKHRISKEKIGFISCLLLAATFLLFPGTAVTFAASISDYAIKEYGLGFIVFPSLLVILSLLIAFTPFGKVRLGGWDEKPEFGFISWTAMLFAAGMGSGLIFWGVAEPIVHFAHPPSFVADTPLTSNVEDAKDTALALTYFHWGVHAWAVYAISGLVMAWFAFNRGRAMTISASFTDKAKGGRFQVFDFLAVIAVIFGVAGTLANTIALVQSGLQQVLPWDIAGLIFRLVLLMAIALAFTLSSTLGLDRGIKQMSLFNLLFVIAILLVVVSIVDPFAVAETLVTSTVSYISLLPSLSFTIDPSSRAWSEGWSIIYFVWWIAWAPFVGPFIARISKGRTVRQYLLCTIFVPTLTTIVWFSAFGGSVFEMSILDDVIAATNSDVTYGLFTFFDAIPYGKILTYSAILLLVTFVITSADSAIYVSGMLTGSSQLGSKLMWSLTLVAITIALLLKNDIELNKQIAILGAVPFTLILMAQTCILLKEMFNHKRVVDSDE
>NC_010506.1|WP_041417524.1|1699742_1701248_-|alkaline-phosphatase
MIVINMKIVAALVSCSLVTITANAAVLPTNQTDSEWFKSSALKVTEKTQQVNKEKAKNVILFVGDGMGISTLTAARIFQGQQIEGNMGGEENFLSFEQFPHTALVKTYNTNQQTPDSAGTMTAMVTGVKSKAGVLSVSDTSLRANCLSSKGNELTTLVDLANAKGLSTGVVSTARITHATPAAAYSSTPERGWEADSNLPAEAITNECKDIAYQLVMRDEDNALTVALGGGRRNFIPDTITDGEDKKGRRSDGVDLTKSWTDNLSNAAYVWDKTGFDAIDTASTEHLLGLFNSSHMEYEADRMDDTAGEPSLTEMTTKSIDILKKNDQGYLLIVESGRIDHGHHAGNAHRALMDAVELSNAVQAAIDSTDPEETLIMVTADHSHVFTIAGYPKRGNPILGLVHNVDGNVATAKDGKPYTTLGYTNGPGAVVGLRDDLSSVDTQEKSFKQQALIPMGSETHAGEDISLHATGPGSHLVQGVIEQNVIFHIINQAQSLGGTKY
>NC_010506.1|WP_012323987.1|1698080_1699712_-|alkaline-phosphatase
MNKKLLVLSLAAILGLAACGSDGDNGANGNNGTDGNDGSNGTDGKDWSSVNEWYIDGQRRVTKAAGFSVNNEAGAAKNIILFVGDGMGVSTVTAARILEGQLKGETGEENSLSFETLPHLGLAKTYNVDGQTPDSAGTMTAMVTGVKTDVGVLSQAEGVTRGNCASTTNQNLVTSLELAAMAGLSTGVVSTARITHATPAATYAHSPERNWESDADLPAEAVTNGCRDIASQLLDFDFGSGINVVMGGGRRAFIPNTLTDAEGKNGKRLDGRNLTDEWTAKYTNSAYVEDRDSFLAINPATTDHALGLFNSSHMEYDYDRTIQGVTGEPSLAEMTAKSIDILKKNDKGFVLIVEAGRIDHAHHAGNAARALYDTIALSEAVRVAMEKTSTKDTLLMVTADHSHVFTIAGYPTRGNPILGLVKGNDSSGLPGPTNATDNNGLPYTTVGYTNGRGYANLSTGGDERYGYPVETGRVDLNYIDTQSAGFHQEALVPLSSETHAGEDVGIFASGPGSHLIEGTVEQNHIFHVINHAANLVVKAEAAQ
>NC_010506.1|WP_012323986.1|1697239_1698016_-|hypothetical-protein
MKYSLLSTALLFTVSLNCFAHSEGIEEAVSKKKVSRFQCDQLAPTNIKLEYDVIESDRFGTPQASYLMRLIKNQHQVIYQTSPQTFEAWDKNGEYIRYFPEERRSITYRPSDLRSLNISYDLLQQFHLVSPELKSQLQRGENTQASCFRLEQYSGLQGEQNIKLKWIESLALPYQFSITHARGSVHYQLRDASPMTSEKVNTITQGYNDLDFADVGDSESDPFIAKMITQGFIQHGSSGFYDTDGNSLSGGDHHGHAH
>NC_010506.1|WP_012323985.1|1696173_1697184_+|low-specificity-L-threonine-aldolase
MIDFRSDTVTMPTPAMRKAMANAEVGDDVYGDDPSVNRLEAMSAEMYGFDAALFTSSGTQANLLALMSHCERGDEYLCGQQAHNYKFEGGGAAVLGSIQPQPLTNQADGTILLSEVKAAIKPDDIHFAKTRLLSLENTIGGKVLPQEYLAQAQTLAFDNKLKIHLDGARVANAAVAQNIAISEVTQFFDSVSICLSKGLCAPVGSLLLGDERLIAKARRWRKMLGGGMRQAGVLAAAASLAITEQVERLAIDHDNAAYLAQQLAALDEVSVDLSLVQTNMVYVQFSPQLNVQTIAAKLKANGILISPSSTVRLVTHADVSRKDIDTFITELKRHLK
>NC_010506.1|WP_012323996.1|1710718_1710931_+|cold-shock-protein
MSNSTTGTVKWFNEEKGFGFISQENGGADVFVHFRAIASDGFKTLAEGQKVSFEVEQGQKGLQAANVVAL
>NC_010506.1|WP_012323997.1|1711232_1712381_-|L-threonine-dehydrogenase
MAAKFFIPSVNVLGQNAVDEAIGDIKTLGFKHALIVTDKPLVEIGLVGQVAEKLGAAGILSTVFDGVQPNPTVGNVEAGLALLNANECDFVVSLGGGSPHDCAKGIALVATNGGSIKDYEGLDVSTKPQLPLVAINTTAGTASEMTRFCIITDEARHIKMAIVDKHTTPILSVNDPELMLAKPAGLTAATGMDALTHAVEAYVSIAANPITDACAIKAIELIKGNLVEAVDNGQNIDARDQMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYDLPHGVCNALLLPHVQEYNAQVSAARLKDVAKAMGVEVASMSDEQGAAAAIEAIKSLSVAVKIPENLTKLGVKAEDIPTLAENALKDACGLTNPKQASHEEICQIFTNAL
>NC_010506.1|WP_012323998.1|1712745_1713897_+|porin
MQISPIAQFITLTLLATSFDLAAEQKVTLASLKLQIEALQKQVMLLEQAQKQEAQKREKAISQADKPPEQVQPKSETGNNTLKVYATMRPTYGYFDEGGETFYDVRDALSHIGLKATNEFMPGWRAELHGEWGVDLSNNGDFGKARRAYVALGGPYGRIGIGKQRPPQYLLIAEYVDIFNHANSPFAYDPESVFFVNNMLTYRLSVENFSWLAAAQFDGGSGSNSADLVNLGLSYDNDGFHGAVTYLEQSSIDGNLTTGEDEVWAVSLAKEFGNGFYLAGAYQDKNYQRDGISQDRNGHTLDIASAYRISQQFRVKLGYFDFDDGRETFLSQRYHGFNTTLEWLPDDNLRFHLEYLTKDYDYLNDFDSWTVGFRYDFAKDWRF
>NC_010506.1|WP_012323999.1|1713982_1714462_-|YbaK/EbsC-family-protein
MTISVRLNEYLNQNEVSYDLISHPHSSSSISSAVAANIPPAQIAKAVILEDHEGRKMMAVLLADHKISLGSLGEKLNRDLHLIDEKSVYKMFEDCEKGAIPPFGNAYNMEAVYDDLLVQSKELYLEAGDHNSLLRVSREDFVRLIKDSKHMRFSHQTIH
>NC_010506.1|WP_012324000.1|1714559_1715033_-|NYN-domain-containing-protein
MKKIALFVDVQNIYYTCRQAHGRQFNYRKLWQHISHEGEIVSATAYAIHKGDDGQLKFQDALKHIGFDVKLKPFIQRADGSAKGDWDVGITIDIMEAASEVDSIILLSGDGDFDLLMLKIYQKYGIETQVYGVPGLTAKSLIDSAAKYHEIDDALLL
>NC_010506.1|WP_012324001.1|1715444_1715624_-|hypothetical-protein
MGSNATTNRADTLTITVCTVVEALATERFTAVISDDIEDILFTFSMLLFIILRVNLDNG
>NC_010506.1|WP_041417525.1|1715782_1716232_-|GNAT-family-N-acetyltransferase
MHLHWLSLNNRAQVYPFYKQFMPYARLTKKERIAVLLEEKGTAEVAVESEVIAAVRLRPIGLYTLVTGMLIHPQHRGKGLGHTLMRGINNEMTDEYTFIFSLPHLVSFYQQHGFEKCQTPPNDIGQLFNRYHSEDKPLSLLAFKRKTVE
>NC_010506.1|WP_012324003.1|1716520_1717633_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKSLIIIPIVLLITAIASFSGFSEAKKSADKTARAPRVVPVVTGSVEQHMLSQSLSLIGKLEADRSVFIAPEVAGKIKQINVVANQDIQAGQVLIQLEDARVQASVAEANAYLNDEKRKLKEFQKLIAKSAITQTEIDAQKASVDIAAARLAAALAELDFHYIKAPFSGTAGLLDFSLGKMVTAGSELLSLDDLSLMRLDLQVPENYLSLLSVGMKVNATNRAWPAEMFSGQVVAIDPRVNHETLSLKVRVSFDNASHKLKPGMLMSANLGLPAVSEPVIPVQAIEYSGTKRFVYVVGEDKLAKRTQVTLGARIKDEVVITQGVDIGEKIVVQGLVNMRDGLRVDELLAPKSHMTADADQGGNSSGDRS
>NC_010506.1|WP_012324004.1|1717632_1720740_+|efflux-RND-transporter-permease-subunit
MLISDISVKRPVVAIVLSLLLCVFGAVSFSKLAIREMPDVESPVVTVMTTYEGASATIMESQITTALEDELTGISGIDEITSVTRNGMSRITITFDLDWDLTEGVSDVRDAVARAQRRLPDEANDPIVSKDNGSGEPSIYINLSSSVMDRTQLTDYAQRVLEDRFSLITGVSSVSISGGLYKVMYVQLKPELMAGRNVTTADIIASLKRENVETPGGEVRNDTTVMTVRTARLYNHAEDFDYLVVRTASDGSPVYLKDVASVFIGAENENSTFKSDGVPNLSLGIIAQSDANPLLVAKAAHKEVERIQQFLPAGTELVVDYDSTVFIDRSITEVYNTLFITGGLVVLVLYIFIGQVRATLIPAVTVPVSLISAFIAANFFGFSINLLTLMALILSIGLVVDDAIVVVENIFHHLEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGRLFTEFSVMLAMSVIFSSIVALTLTPVLGSKMLKANVKPNRFNLWVDKLFNKLEFGYRKTVAQAVRFRFAAPLVIILCIAGSALLMKSVPSQLAPQEDRGVIFAFVKGAEGTSYNRMTANMDIVEQRLMPLLGQGVIKSFSVQAPAFGGRAGDQTGFVIMQLESWEDRSINAQQALGIVAKALKGIPDVMVRPMLPGFRGQSSEPVQFVIGGSDYDELFKWAQVLQEEAIHSPMLEGADLDYAETTPELVVSVDRERAAELGISVAEVSETLEVMLGGRSETTFVDRGEEYDVYLRGDENSFNSMSDLSQIYMRSARGELVSLDSITHIEEVASANKLSHTNKQKSITLKANLGEGYTLGEALDFLDAKAIEILPSDISVSYTGESKDFKENQSSVLVVFGLALLVAYLVLAAQFESFINPMVVMFTVPMGVFGGFLGLYLTGQGLNIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGLELEQAIIDASARRLRPILMTAFTTLVGAVPLILSTGAGSESRIAVGTVVFFGMAFATFVTLLVIPAMYRLISGATHSPGFVEAKLNRAISAQQLAEQK
>NC_010506.1|WP_012324005.1|1721247_1724886_+|rRNA-(guanine-N1)-methyltransferase
MSIFAPELTAICGQVCSRLTAIGRSTFSYRRFRLSSFLISSSAIYILFPHSILADDTELYVHEASARSGARPQMLIIFDNSGSMNTTVVGAEKPYSSNAGGISGDNLGKQNKLYFTRGATAAEDQPNPSNTSETRHFSGVINSCESSWESLHEYGFYTGYFRGYSFTGSEGTWKELDDTGTEGVIGIDCFEDIQDEKWANAVGVTSGLPVDGRGSSSQPRFYTYANGSSTEATKQRARERAELTGFGTGRPLTIYTQDYLTWQHGTKEKANISRLEIAKNAVKSIILTTPSVDFGLAVFNVNAWNEFERDGGRIISGLKENTSGVKSDLIEVIGDIQGKTNTPLCETLYEAYRYFSGLSVDFAYKNTDLPGAGYYVSQQPQMDASVAKSGIYESPFKKCQNNASVVIITDGVPTKDAAANGFIDTLTGGADKYGSAATGDLNYLSAMSSWMNKYDLNTSEPGEQTVSTHTIGFSKGAASAAALLKKTAEVGGGRYFDATNANLLQGSLQQVVSEALDTNSSFTSPAVASNNFNRTQSFEYAYYSIFLPNKGPTWLGNLKKYRVTGKGEVVDKAGNPAIGLDGNIKSTACSFWTPSAVCSAGGDGNEVEKGGALSAMQAADSRTIYSNLNTGLTELTVNNVTSTAGGTENLVNYLGVAEEQFPSLFGWAMGLDVDNNKGLESIPNPATNWRDDIMGDALHSKPLALNFGTKSTPDVRIVMGTNHGFLHMFKDDSSSNSVTENWAFIPYELLPNLKTLRANVPTGVHSVYGVDGSPVAYTESNDSGIEKAWLFFGMRRGGSSYYAIDISNPDNPSFMWKVDASSPGMSELGQSWSTPVVTTIPGRSSESPVLIFGAGYSPSGKDGAGIGADDVKGRGVFILDAETGALVHQFGSASTGGTQLPGISDSIPSSVAVLDSNADGATDRIYATDTGGNVWRMDMPSADTNKWSGFKFASLGGGVQSSDRRFYSAPAVAQTVITNIAEVTVENGGTTTKTKTKLNIPYDAVVVGSGHRAMPSDLSRSDMFFTLQDRNVVSRSFKGGGSGVVIPTTLTLSELYDVTSTPPSDSDEQEQINFGKKRGWYYSFSRTGEKNLSPATIVNGRVFFTSFVPPGDNSSSDQCISAGAGFLYNFDLHRGTRTHTYIRTGEFVPDTPQLIVPPRVVNEGEEANPPNMYLIGIGAALPGNPPEGCDPSDLKCVGGGLSTNRIYYYTSD

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Crispr_ID: NC_010506_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010506_6

2185765-2185913

Unclear

Consensus_repeat	Method
AGAAACTTATGATGGCAATTATGGAGATAGAAAAGAGGGCGCGGATCAAGACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010506_6

>merge|NC_010506|6|2185765-2185913|CRISPRCasFinder
AGAAACTTATGATGGCAATTATGGAGATAGAAAAGAGGGCGCGGATCAAGACGCATTGATGCCATAATTTTCTCAACCTAGTAGTTAGCCATCATAGAAACTTATGATGGCAATTATGGAGATAGAAAAGAAGGCGCGGATCAAGACGC

>NC_010506|6|6|2185765-2185913|CRISPRCasFinder
AGAAACTTATGATGGCAATTATGGAGATAGAAAAGAGGGCGCGGATCAAGACGC	ATTGATGCCATAATTTTCTCAACCTAGTAGTTAGCCATCAT
AGAAACTTATGATGGCAATTATGGAGATAGAAAAGAAGGCGCGGATCAAGACGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010506.1\|WP_012324382.1\|2176202_2176862_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|236659
NC_010506.1\|WP_041417564.1\|2190247_2190958_-\|two-component-system-response-regulator-BtsR	unknown	unknown	gnl\|CDD\|236956
NC_010506.1\|WP_012324396.1\|2190954_2192631_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NC_010506.1\|WP_012324390.1\|2186220_2186538_+\|DUF2007-domain-containing-protein	unknown	unknown	gnl\|CDD\|378182
NC_010506.1\|WP_012324394.1\|2188655_2190092_-\|carbon-starvation-protein-A	unknown	unknown	gnl\|CDD\|224877
NC_010506.1\|WP_012324383.1\|2177121_2178882_+\|aryl-sulfate-sulfotransferase	unknown	unknown	gnl\|CDD\|368677
NC_010506.1\|WP_012324387.1\|2182575_2182908_+\|preprotein-translocase-subunit-YajC	unknown	unknown	gnl\|CDD\|235518
NC_010506.1\|WP_012324391.1\|2186576_2186936_+\|sulfurtransferase	unknown	unknown	gnl\|CDD\|236337
NC_010506.1\|WP_012324388.1\|2182925_2184776_+\|protein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NC_010506.1\|WP_012324386.1\|2180200_2181238_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NC_010506.1\|WP_012324380.1\|2174006_2175410_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_010506.1\|WP_012324398.1\|2193073_2193421_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012324384.1\|2178938_2179541_-\|DUF479-domain-containing-protein	unknown	unknown	gnl\|CDD\|225666
NC_010506.1\|WP_012324392.1\|2186960_2187872_+\|bifunctional-precorrin-2-dehydrogenase/sirohydrochlorin-ferrochelatase	unknown	unknown	gnl\|CDD\|224562
NC_010506.1\|WP_012324389.1\|2184788_2185736_+\|protein-translocase-subunit-SecF	unknown	unknown	gnl\|CDD\|237275
NC_010506.1\|WP_012324397.1\|2192788_2193031_+\|YecH-family-protein	unknown	unknown	gnl\|CDD\|163565
NC_010506.1\|WP_012324393.1\|2188039_2188579_+\|YaeQ-family-protein	unknown	unknown	gnl\|CDD\|377782
NC_010506.1\|WP_012324381.1\|2175750_2176152_+\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012324379.1\|2172681_2173911_+\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NC_010506.1\|WP_012324399.1\|2193407_2194076_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|222854

Protein	Function_ID	Function_description	E-value
NC_010506.1\|WP_012324382.1\|2176202_2176862_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.44623e-73
NC_010506.1\|WP_041417564.1\|2190247_2190958_-\|two-component-system-response-regulator-BtsR	gnl\|CDD\|236956	PRK11697, PRK11697, two-component system response regulator BtsR.	2.24159e-154
NC_010506.1\|WP_012324396.1\|2190954_2192631_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NC_010506.1\|WP_012324390.1\|2186220_2186538_+\|DUF2007-domain-containing-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	1.65529e-09
NC_010506.1\|WP_012324394.1\|2188655_2190092_-\|carbon-starvation-protein-A	gnl\|CDD\|224877	COG1966, CstA, Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms].	1.66633e-133
NC_010506.1\|WP_012324383.1\|2177121_2178882_+\|aryl-sulfate-sulfotransferase	gnl\|CDD\|368677	pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST). This family consists of several bacterial Arylsulfotransferase proteins. Arylsulfotransferase (ASST) transfers a sulfate group from phenolic sulfate esters to a phenolic acceptor substrate.	1.48852e-155
NC_010506.1\|WP_012324387.1\|2182575_2182908_+\|preprotein-translocase-subunit-YajC	gnl\|CDD\|235518	PRK05585, yajC, preprotein translocase subunit YajC; Validated.	1.88723e-50
NC_010506.1\|WP_012324391.1\|2186576_2186936_+\|sulfurtransferase	gnl\|CDD\|236337	PRK08762, PRK08762, molybdopterin-synthase adenylyltransferase MoeB.	4.98791e-31
NC_010506.1\|WP_012324388.1\|2182925_2184776_+\|protein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	0
NC_010506.1\|WP_012324386.1\|2180200_2181238_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NC_010506.1\|WP_012324380.1\|2174006_2175410_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	4.9487e-22
NC_010506.1\|WP_012324384.1\|2178938_2179541_-\|DUF479-domain-containing-protein	gnl\|CDD\|225666	COG3124, COG3124, Uncharacterized protein conserved in bacteria [Function unknown].	9.22631e-47
NC_010506.1\|WP_012324392.1\|2186960_2187872_+\|bifunctional-precorrin-2-dehydrogenase/sirohydrochlorin-ferrochelatase	gnl\|CDD\|224562	COG1648, CysG, Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism].	3.79059e-55
NC_010506.1\|WP_012324389.1\|2184788_2185736_+\|protein-translocase-subunit-SecF	gnl\|CDD\|237275	PRK13022, secF, protein translocase subunit SecF.	8.54278e-140
NC_010506.1\|WP_012324393.1\|2188039_2188579_+\|YaeQ-family-protein	gnl\|CDD\|377782	pfam07152, YaeQ, YaeQ protein. This family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH, a specialized transcription elongation protein. YaeQ is known to compensate for loss of RfaH function.	2.68566e-104
NC_010506.1\|WP_012324397.1\|2192788_2193031_+\|YecH-family-protein	gnl\|CDD\|163565	TIGR03853, hypothetical_protein, probable metal-binding protein. This model describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.	1.18681e-34
NC_010506.1\|WP_012324379.1\|2172681_2173911_+\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NC_010506.1\|WP_012324399.1\|2193407_2194076_-\|AAA-family-ATPase	gnl\|CDD\|222854	PHA02518, PHA02518, ParA-like protein; Provisional.	4.12936e-55

>NC_010506.1|WP_012324389.1|2184788_2185736_+|protein-translocase-subunit-SecF
MYQILSIKGTINFLRHALPISMLSLLLVLGSLTSLATKGINWGLDFTGGTVVELEFSSPIDLEILRGKLTSVETDGAVVQNFGSSRDVLTRLPVKEGVATDTQVAQVMEAATALDPQVIQKRVEVVGPQIGKELAEQGGLAVLVALICILIYVSFRFEWRLALGSVAALAHDVIITLGVFSLLQLDFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKSSPEEVVNTSITQTMSRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINREHMMPVEIEKEGADQDALMP
>NC_010506.1|WP_012324388.1|2182925_2184776_+|protein-translocase-subunit-SecD
MLNKYPMWKNLMVMIIIAVGSFYAIPNLFGEDYAVQVVATRGAEVTATTQSTVNDILASKNIEVKRSELENGQLLVRVNNGEQQLLAKEAIIESLGDKYIVALNLAPKTPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMTEAKMSDFRTDLRGEKIRYAGIRNSAKGIEIKFRDEENLGRAERFLKTRGNDMVFRDISSGGNYLLLANLSEAYVKQVKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKDILGATASIEFHMVDEKADAAAAASGRISPSSQVYNRRNGGQVVLHKAVMLTGDHIQGAQPSFDEYSRPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGEKNPDGSIKMQKIEEVISVATIQARLGRNFVITGLEHAEAQSLALLLRAGALIAPVTIVEERTIGPSLGAENIQNGMQAMIWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKKLSI
>NC_010506.1|WP_012324387.1|2182575_2182908_+|preprotein-translocase-subunit-YajC
MLISNAYAADAPVSGAGGTMELVFMLVIFGLIFYFMIFRPQSKRVKEHKSLMSSLGKGDEVLTSGGILGKIAKISDENDYVLLSLNETTEITIKKDYIAAVLPKGSIKSL
>NC_010506.1|WP_012324386.1|2180200_2181238_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVTDFSFELPDELIARYPMPERTSSRLLSLEGNSGKLGDNQFTDILDMVNPGDLMVFNNTRVIPARLFGQKETGGKLEILVERMLDDKRILAHVRSSKSPKVNTKVCLDGGYEMTMLARHDALFELELNDEKTILEVLEKVGHMPLPPYIDRPDEDADKERYQTVYNDAPGAVAAPTAGLHFDDALLNRLKEKGVDTAFVTLHVGAGTFQPVKVDDVLDHKMHSEWAEVSQEVVDKIAHTKAHGGRVIAVGTTSVRSLESAAKASEDELQPFCRDTDIFIYPGYEFKVVDAMVTNFHLPESTLIMLLSAFAGFDEVKNAYQHAIAQKYRFFSYGDAMFVTKKAN
>NC_010506.1|WP_012324384.1|2178938_2179541_-|DUF479-domain-containing-protein
MNFLAHLHLADNSNTSLAANLAGDFAKGNIADFPKHLQQGIWLHRQIDQLTDSHEITKELLTKFPVSLRRAAPILIDLAFDHMLAKYWDEYHSASLKAFSTIAYDAIDACEQLPERLQLIAPKIRSENWLLAYRDRKGLNKAIESMARRVSKPEIFNGATKAVSDLDIEIEIAFRTFYPQLMAYSRIWTRKTPSEYLHLD
>NC_010506.1|WP_012324383.1|2177121_2178882_+|aryl-sulfate-sulfotransferase
MNLKPLAICTLLVSGALLSSVSHTVIAGGDLPGTSSSAVAQGQLGFVYVDPYHFSPLVALIDLGGKQISDVSVEVKGSGKKGVDIRYQVSQNQLNTHDGIPVFGLYPDLLNTVYVRYKLNGAFVNETYRIRTSALPHIHIDGQERSQYEYEAVTVADGFQNRLYLVDGQVIPPNVRDHWDWLPTQNIIDTNGDVRWHLNAGVIYDRPGGSMSFKQTSDGKLIFGQGVMFEQYAGFNSAYYAKYDFIGKPILKRTLPRGFIGLSHEITEMPNGHLLLRVGKKDYLTKEGLKLDTVRDHVIEVDSNGDVVKVWDFNKILDPLRDTVLKSLDMGAVCLNVDVKEAGKTRSAEQLANEPFGDVAGVGTGRNWIHINSIGYDASDDSIIISSRHQSAVVKVGRDDEVKWILGTPEGWSDALAAKVLTPVDSQGEQLRCDKGGCDGEFDWSWTQHTAWPVPERGTVTVFDNGDGRGLKQPFFATDKYSRGVEYKVDMDKMTVQQVWEYGKERGYEWYSPITSITQWQADHQTMFMASASAGLLESEKAPEHWITEVDPKTNEVKVEIKVKTLTKHEPGYRSTVVHPEKMFSQ
>NC_010506.1|WP_012324382.1|2176202_2176862_-|RluA-family-pseudouridine-synthase
MQIFTYTPPSIPWLDIRYQDRDMIVINKPSGLLSNPGRAENTFDCALTRLLQRYPETILVHRLDCATSGIMVFALNKKAESNIKTQFQNRLSKKTYIAEVQGHLDKTEGVIELAMKADSERPPLQKIAEDGKPSKTYYKVLEKRENSTLVELNPVTGRTHQLRLHMLAIGHPILGDDFYGEQEVIDASHRLCLHAMTLAITHPYSGKLMSFTSLHPFTA
>NC_010506.1|WP_012324381.1|2175750_2176152_+|hypothetical-protein
MTSVTTVIQDQTFKVDSSELLKVIKMSVVEKRQRLGWQAKEAEKRDIVGRWVDERDSVGDKITLYREDGKIYLETWYNDGCHSLDEMEATPTPEGLKLEDVGGNIFGEYFLLSDGKTLQFCNSSSCFYTAKVA
>NC_010506.1|WP_012324380.1|2174006_2175410_-|Gfo/Idh/MocA-family-oxidoreductase
MKNFNRRAFLKAAGATTAGLVTSGLILPASAQPQKMPPKPSNGKSVMGLISPKLSTVRVGFIGVGQRGYGHVKHFCHLEGVEIKAICDTDPAVLDRAIDFVVEQGLAKPNAYTGSEHTYRDMLQRDDIDIAIISTPWQWHAPMAIDTMENDKHAFVEVPLAMSVEECWQIVDTAERTQKNCMMMENVNYGRDELMVLNMVRQGVFGELIHGEAAYIHELRWQMKELESKTGSWRTHWHTKRNGNLYPTHGLGPVSQYMNINRGDRFDYLTSMSSPALGRALYAKREFPADHERNQLNYINGDMSTSLIKTVKGRTIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIALEQSPFERDEKGGESFHRWDMDMTRWYDKYDHPLWQQMGKEAERNGGHGGMDFLMLWRMVYCLRNAEPLDQDVYDGAAWSVVNILSEESVNNRSNSVTFPDFTRGAWKTGKPLGIVGA
>NC_010506.1|WP_012324379.1|2172681_2173911_+|serine/threonine-transporter-SstT
MNQNQSFLAKMANGSLVLQILVGIIAGIIVATLSESAAQSVAFLGQLFVGALKAIAPILVFILVAASIANQKKNAKTNMRPIVILYLFGTFAAAVTAVLMSFAFPTTLALTLDAAQASPPEGIGEVIHTLLFKLVDNPVNALMTGNYIGILAWGVGLGLALHHATDSTKQVFADVSHGVSQMVRFIIRLAPIGIFGLVSSTFASTGFSAIAGYMHLLLVLLGAMAIMALIINPAIVYFKIRRNPYPLVFTCIRESGVTAFFTRSSAANIPVNMALCEKLKLHEDTYSVSIPLGATINMGGAAITITILTLAAANTMGVQVDILTAILLSVVAGISACGASGVAGGSLLLIPLACSLFGISNDIAMQVVAVGFIIGVIQDSAETGLNSSTDVIFTAAACEAAERKENAGA
>NC_010506.1|WP_012324390.1|2186220_2186538_+|DUF2007-domain-containing-protein
MEERNRMVAGGNLLQAHTWKGLLEACGIEVQLKGEALLGGIGELPVDLQNVELWVPESQYEKAKAQLESLNTESPQWQCVQCHEMNEDSFELCWQCSAERCVQHN
>NC_010506.1|WP_012324391.1|2186576_2186936_+|sulfurtransferase
MQHNPAFLALVESILPQIMEMSVDEYQNSSDWELIDVREDHEWLKGHLPKAHHLGRGIIERDIETRFADKETPILLYCGGGYRSALAAMNLQLMGYSKVRSLTGGYKAWIERQLPIVQA
>NC_010506.1|WP_012324392.1|2186960_2187872_+|bifunctional-precorrin-2-dehydrogenase/sirohydrochlorin-ferrochelatase
MQYFPLFVDTTKLNVLLIGAGEVASRKLELLGRTEACIKVIAIETSDEVQGYADKKRITLIQRAVVEEDIADVDIIYLATANEALNGHLADLATARGIWVNVVDSPELCRFITPSIVDRGRLQVAISTAGAAPVFARELRSRIESWLPPSLADLFDFVAEHRKEVQDRLPEFKARKLFWEHFFRSNGDRFDDKTLQRYEDSFQGLTAQGEILLIDDCTSIVMLPISAMPLMQRLDHIFSDIELPFTLNELVRRDATRENLVAISELTHRLEKGKRSLVFADRDKISQLKAHFPMAKHLKAGSL
>NC_010506.1|WP_012324393.1|2188039_2188579_+|YaeQ-family-protein
MAPKATVYKVNLQIADIDRGYYQDHNLTLAQHPSETDSRMMLRLLAFAMNASDTLEFSKGLCVEDEPELWEKTLVGDIELWIEFGQSDEKWLRKASGRAKQVQLFAYGGRSVPIWWQQNEQAFSRYKNLKVWNIPENAVKEMGELVSRSMSLQYNISEGQIWVSNDDGSVLVEPELLKE
>NC_010506.1|WP_012324394.1|2188655_2190092_-|carbon-starvation-protein-A
MMWFLMCVGLLIGGYFIYGKFVEKVFGINTQRQTPAFTKTDGVDFVPMSKGKVYLIQLLNIAGVGPIFGPILGALYGPAAMLWIVFGCIFAGAVHDYFSGMLSVRNNGQSVPNLAGKYLGKGAKHFMNVFAIILLLLVGVVFISAPAGLLGKLTGWDVSIFVGIIFTYYLIATIVPVDKIIGRLYPFFGALLLFMSIGLTIAIVVSSEHTLLPGFEAKDFLTNLNPNDMPLWPALFITIACGAVSGFHATQSPLMARCVENESNGRFVFFGAMIGEGVIALIWCAIALSFFGGVQGLSDGMGGNPANVVYEASTGLLGAVGGFMAILGVIILPITSGDTAFRSARLILSEFFKMPQTALPKRLLLAIPLFVMGAILTQVDFGVIWRYFGVANQTTAVMMLWTASAYLLRHNKLHWICTIPAMFMTTVVISFLLSSETLGAGLPITISTIAGLISTAIISALIIIKTKGKGDEGIIEEA
>NC_010506.1|WP_041417564.1|2190247_2190958_-|two-component-system-response-regulator-BtsR
MITSMIVDDELFAREELLDLLSEHQDIDIVGQCSNAIEALQMISKHKPQLLFLDIQMPKITGMELIGMLDPDTMPYVVFVTAFDEYAIKAFDNHAFDYLLKPIDEERLSQTLKRIRKDLSPKPVEVLAPKILTHLPCYTGTRLKVLPLSEVEYIFSDLSGIHIATSKELVHTHLTLKVLEEKTSLVRCHRQYLIKPDAVSEIEVQESGAEVITLSGAKVPVSRRYLKPLKQLFGFQ
>NC_010506.1|WP_012324396.1|2190954_2192631_-|sensor-histidine-kinase
MSLVLLLTQQMSLYLVMVYLVSKTPLFQFFSEAATRLPHKIFIYLTFSSFCVMATYFGEHTNDALANTRAMGAVLGGLLGGPVTGFLVGLTGGLHRYSMGGFTDLACAISTTLEGLSAGIISLYLRKQGKSELIYAPLLVCLVTFSAEMLQMGVILLVAQPFGDAWSLVKQIALPMLLVNSIGAALFMSMVRDQKTMFDKMSSVFSTKALKIAERSVGVLSKGFDQKSSAKVAKIILEETNVGAVAITDTEKLLAFIGAGADHHIPGTPISSQITQDAIDNNCVMFADGVDVAYACSISSQCGLGSSLVIPLRSETQVIGTIKLYEPKNKLFLNINRTLGEGIGRLLSNQILFGRFEQQQNLLTQAELKLLQAQVNPHFLFNALNTIAAIIKRDPLKARKLIQQLAQFLRINLKRTTGLVTLEDELEHIESYLTIEKARFIDKLEVNIHIDESLRHYRLPAFTLQPIIENAVKHGTSHMLDKGIIQVTASITDELLLLEVTDNAGLYQLKENSEGLGMNLVHKRLQNQFGSEYGLKVDSEPDSYTKVSIQLPYSGATQ
>NC_010506.1|WP_012324397.1|2192788_2193031_+|YecH-family-protein
MTQSIHGHQVMELMLALNKAISKEELKLLMLRQFGASAKYHTCSACEMSADELIILLERKGKFIISERGVETAREKICNH
>NC_010506.1|WP_012324398.1|2193073_2193421_-|hypothetical-protein
MSLTDLKRRKKKSHQDCISVDDFIEDANSYAFGKPSAVSRNRKKLRQAQLNGLDKHSTKIFKHATFSLTEDAITVLDELATQSKIAKSRLIRILIHDFFDLSDEERENVIGKGED
>NC_010506.1|WP_012324399.1|2193407_2194076_-|AAA-family-ATPase
MIILVGGEKGGAGKSCLAQNVAVHITRKFQANVLMVDCDPQRTTSDWIQARNEDPELPTINCIQLYGKIRNDLLSQDERFDYVIVDCGGQDNLAMRAAMSVATYVILPLRPKRRDLKTLPHMEDMLSTCKMVNPKMVATIVMTQCPSLPSQYKRILEAKEVVQSFGLRVLNSVTFNRNIYDDSEEQGASVMEIEPEGKAATEIVAIADEIFAIEPENSYELN

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Crispr_ID: NC_010506_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010506_7

2638511-2638770

Orphan

Consensus_repeat	Method
TGAACCCTAGGGTTCCTATTGTTTAAAATTAGCTATCCCTTTGCCATATTTAGAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_010506_7

>merge|NC_010506|7|2638511-2638770|CRISPRCasFinder
TGAACCCTAGGGTTCCTATTGTTTAAAATCAGCTATCCCTCCGGCATACTAAAAGAGGCCTGATATCGAAAGATGTCAGGCTTTTTGCTTTTGAAAGGGATGAACCCTAGGGTTCCTATTGTTTAAAATTAGCTATCCCTTTGCCATATTTAGATGAAGCCCCAAGTAGAGATACTTGGGGCTTTTTCGTTTCAAGATAGTTAGTTGAACCCTAGGGTTCCTATTGTTTAAAATCAGCTATCCCTTTGCCATATTTAGAT

>NC_010506|7|7|2638511-2638770|CRISPRCasFinder
TGAACCCTAGGGTTCCTATTGTTTAAAATCAGCTATCCCTCCGGCATACTAAAAG	AGGCCTGATATCGAAAGATGTCAGGCTTTTTGCTTTTGAAAGGGA
TGAACCCTAGGGTTCCTATTGTTTAAAATTAGCTATCCCTTTGCCATATTTAGAT	GAAGCCCCAAGTAGAGATACTTGGGGCTTTTTCGTTTCAAGATAGTTAGT
TGAACCCTAGGGTTCCTATTGTTTAAAATCAGCTATCCCTTTGCCATATTTAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010506.1\|WP_012324773.1\|2630935_2631175_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NC_010506.1\|WP_041418112.1\|2639814_2641647_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NC_010506.1\|WP_012324772.1\|2628810_2630946_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NC_010506.1\|WP_012324785.1\|2647656_2649183_-\|SpoVR-family-protein	unknown	unknown	gnl\|CDD\|236973
NC_010506.1\|WP_041417601.1\|2627984_2628518_+\|cell-division-protein-ZapC	unknown	unknown	gnl\|CDD\|369220
NC_010506.1\|WP_012324781.1\|2641692_2642250_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NC_010506.1\|WP_012324779.1\|2639142_2639793_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NC_010506.1\|WP_012324787.1\|2650510_2652445_-\|PrkA-family-serine-protein-kinase	unknown	unknown	gnl\|CDD\|185352
NC_010506.1\|WP_012324768.1\|2619310_2621623_+\|RND-family-transporter	unknown	unknown	gnl\|CDD\|223964
NC_010506.1\|WP_012324769.1\|2621893_2626738_+\|NAD-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|377452
NC_010506.1\|WP_012324778.1\|2636078_2637710_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223994
NC_010506.1\|WP_012324777.1\|2635494_2636010_-\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	unknown	unknown	gnl\|CDD\|179953
NC_010506.1\|WP_041417604.1\|2649191_2650460_-\|YeaH/YhbH-family-protein	unknown	unknown	gnl\|CDD\|377280
NC_010506.1\|WP_012324774.1\|2631176_2633096_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236861
NC_010506.1\|WP_012324782.1\|2644580_2645966_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|225536
NC_010506.1\|WP_012324788.1\|2652724_2653306_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NC_010506.1\|WP_041417602.1\|2646078_2646627_+\|DUF882-domain-containing-protein	unknown	unknown	gnl\|CDD\|283577
NC_010506.1\|WP_012324784.1\|2647301_2647589_+\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|180318
NC_010506.1\|WP_012324770.1\|2626797_2627820_+\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NC_010506.1\|WP_012324775.1\|2633131_2635045_+\|DUF3466-family-protein	unknown	unknown	gnl\|CDD\|378770

Protein	Function_ID	Function_description	E-value
NC_010506.1\|WP_012324773.1\|2630935_2631175_+\|thioredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	1.8078e-07
NC_010506.1\|WP_041418112.1\|2639814_2641647_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_010506.1\|WP_012324772.1\|2628810_2630946_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NC_010506.1\|WP_012324785.1\|2647656_2649183_-\|SpoVR-family-protein	gnl\|CDD\|236973	PRK11767, PRK11767, SpoVR family protein; Provisional.	0
NC_010506.1\|WP_041417601.1\|2627984_2628518_+\|cell-division-protein-ZapC	gnl\|CDD\|369220	pfam07126, ZapC, Cell-division protein ZapC. ZapC is one of four FtsZ-binding components of the Z ring in bacteria. Formation of the Z ring on the cytoplasmic surface of the membrane is the starting process for assembly of the cell-division apparatus. It binds directly to the Z ring, and although it is not essential for absolute cell division it contributes to it by enhancing the interactions between the FtsZ protofilaments (or polymers) which aggregate to form the ring conformation in the Z ring.	3.4834e-87
NC_010506.1\|WP_012324781.1\|2641692_2642250_+\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	9.616e-79
NC_010506.1\|WP_012324779.1\|2639142_2639793_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	1.00354e-159
NC_010506.1\|WP_012324787.1\|2650510_2652445_-\|PrkA-family-serine-protein-kinase	gnl\|CDD\|185352	PRK15455, PRK15455, PrkA family serine protein kinase; Provisional.	0
NC_010506.1\|WP_012324768.1\|2619310_2621623_+\|RND-family-transporter	gnl\|CDD\|223964	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only].	8.2192e-96
NC_010506.1\|WP_012324769.1\|2621893_2626738_+\|NAD-glutamate-dehydrogenase	gnl\|CDD\|377452	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase. This family consists of several bacterial proteins which are closely related to NAD-glutamate dehydrogenase found in Streptomyces clavuligerus. Glutamate dehydrogenases (GDHs) are a broadly distributed group of enzymes that catalyze the reversible oxidative deamination of glutamate to ketoglutarate and ammonia.	0
NC_010506.1\|WP_012324778.1\|2636078_2637710_-\|AAA-family-ATPase	gnl\|CDD\|223994	COG1067, LonB, Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones].	2.37452e-105
NC_010506.1\|WP_012324777.1\|2635494_2636010_-\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	1.7952e-124
NC_010506.1\|WP_041417604.1\|2649191_2650460_-\|YeaH/YhbH-family-protein	gnl\|CDD\|377280	pfam04285, DUF444, Protein of unknown function (DUF444). Bacterial protein of unknown function. One family member is predicted to contain a von Willebrand factor (vWF) type A domain (Smart:VWA).	0
NC_010506.1\|WP_012324774.1\|2631176_2633096_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236861	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.	0
NC_010506.1\|WP_012324782.1\|2644580_2645966_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	3.51191e-96
NC_010506.1\|WP_012324788.1\|2652724_2653306_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.86198e-115
NC_010506.1\|WP_041417602.1\|2646078_2646627_+\|DUF882-domain-containing-protein	gnl\|CDD\|283577	pfam05951, Peptidase_M15_2, Bacterial protein of unknown function (DUF882). This family consists of a series of hypothetical bacterial proteins of unknown function.	2.02414e-75
NC_010506.1\|WP_012324784.1\|2647301_2647589_+\|50S-ribosomal-protein-L25	gnl\|CDD\|180318	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed.	3.49318e-52
NC_010506.1\|WP_012324770.1\|2626797_2627820_+\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NC_010506.1\|WP_012324775.1\|2633131_2635045_+\|DUF3466-family-protein	gnl\|CDD\|378770	pfam11949, DUF3466, Protein of unknown function (DUF3466). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 564 to 612 amino acids in length.	0

>NC_010506.1|WP_012324778.1|2636078_2637710_-|AAA-family-ATPase
MNSNAIPVSALSPQYKLPTISELTHSNQTLLLGQERVSNAFELLTMTAHQHMYLADYAGVDRLEFIKSLVGIQEKQSYQYLSGNIKRSDLLGQFNEREQNSMAENPIPGALANNHYLFICAESLWKREGLWDLLLDILSKREYKVHSSLAATPLDCKVILVGSSMQYSVNWVEESRFPHLFPILGEMVNELDLNHSSESEYATWLKAVAATVDAELEQSALAPLFQYCARLADHQQRFSLLSAQIGQMLAQAKAYGHSKLISAQSFQYALKQYQQRHNASEMLSAQNFDDKFISLPTDDYMVGQINGLTVLDTVEYCYGEPARITASVHYGDGEVADIERKSELAGNIHAKGMMILSSCLYRIFGKDAPLHLNANIVFEQSYQEIDGDSASLAEYCSLISAITEKPIDQGIAVTGALDQFGHVQAIGGVNEKIEGFYNLCERRGLTGRQGVIIPSSNTQQLNLNHNIIEAIKAGKFHLYGIEHIDEAVELLMNMKAGVPDESNNFPDDSLYGLVQDRLARLAGYQEEESGFFAKLLEKMKFSS
>NC_010506.1|WP_012324777.1|2635494_2636010_-|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase
MSKANSFNKEDLIACGHGELFGEHSPRLPIDNMLMIDRITKINADGGEFGKGEIVAELDINPELWFFKCHFDGDPVMPGCLGLDALWQLVGFFLGWEGAEGKGRALGVGEVKFTGQVLPDAKKVTYKLTVKRKVYRKLVMGIADAVMEVDGREIYSATDLKVGIFKDTSSF
>NC_010506.1|WP_012324775.1|2633131_2635045_+|DUF3466-family-protein
MKFTLDKALSLVAVGVIGALQGVQAAPVYEIKNLSEVYQSESDSAELIGTLKRTRNGYGMAVNADGKSVAVAKGKKKLSTSEDDDDGVIDIEDGIAPEEKITFSIDKPIIANNFSFIASEFDTAKPWLPVFDSVNGTTDPSETDSEKPETINSVDVYYYGINDAGVKVGSMTSKEQTAPYTGTNEDQEFWYYREFEERGFAKNAAGTEVQLLPPCTMYEKDATCNNTAGDNKVNIGGYSVAAAINSANLVTGYVGTELSNDSENRIDACVEGETYPTDVCVQIEQYPDTNGNRRIIYQRRAYVWQLDEAGSSVTDSKLLPLGFETTSDTVYIAQGLGLNASGVVAGRSHHKRPGYDNVSFDAFFWTPDGTDGAYQPHWVPLIEDRFQSIAYDINDSGMLVGSFRQYIEGYVRDKFFYFDTQNPEGEVVVPNDFYNALSDLGSKPKSVNNKGQVVGFIETTHEKDKPRPKAGFLFDKEATEFNDLNKILTCESKGFAKNADGAWVRNKVEVQDGTGVTLSYNQDIKVVEGNSINEDGVIVGTAFVRKPQYQYDINGNLVIGDNGLPIFAVDGNGDPLTSFLPRMVVLQPGSGTADEAWLAANNCIDDNGEGENYERKGAASFAWLFALPLLWLRRRFK
>NC_010506.1|WP_012324774.1|2631176_2633096_+|ABC-transporter-ATP-binding-protein
MSLVRINNGSLAYGYTPLLQKADFTIEAGERVCIVGRNGAGKSSLMKVLSGDVLLDEGEFNIATDVKVSRLQQDPPKAEKGSVYSYISAGLQEVGEKLERYHQLAHDVGSAEPEQMERMLKQMERLQEDIDHLNGWQLDNRINQNCELLGLDPDSPLCELSGGWQRKVALARSLVSEPDLLLLDEPTNHLDIDTIEWLEQFLMSYKGAIVFVSHDRGFISRMATRIVDLDRGVVTSWPGNYQAYLDGKAEWLRVEAEQNAHFDKKLAEEEAWIRQGVKARRTRNEGRVRALKALRVERMARLNRQGGAKMAVADTDRSGKLVFDIEDLNYNLPDKNLVKNFTSAVMRGDRIALIGPNGCGKSTLVKLLIGQLEAQSGSVKVGTKLEIAYFDQYREALDPEKTVEENVGDGKKTITINGQDRHILSYLQDFLFSPMRARTPVKALSGGEKNRLLLARLLLRPANLIILDEPTNDLDIETLELLESLLTEYPGTLLIVSHDRAFIDNTVTSSWWFTGNGGWSEYVGGYQDAVSQGARFYSEEPQAINTVQPAKVETLEVKSEPKAKPEKKLSYKLQRELEQLPAQMEQLEQEVEALQEVISAPEFYTQDQEKINLQLQQLADKEQELEVCFERWEELESLK
>NC_010506.1|WP_012324773.1|2630935_2631175_+|thioredoxin-family-protein
MADSRSNYILFHTDVCHLCELAAELLMQSAVKFESQDICDDETLVEQYGTRIPVLKQIDTNRELNWPFDIDALNEFLGA
>NC_010506.1|WP_012324772.1|2628810_2630946_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MLNFFAAAPRGYEYALSLELADLGASDIKESVAGVYFSASLELGYRITLWSRIASRIIFVIHKGPCESPEQLYNAAYGIDWQMEFNHRSTFSIDFHGMGGFINNTMFGALKIKDAIVDRFRDDDCPRPDVARVDADFRIDAHYRRGQITIGLNFSGPALHKRGYRDITGEAPLKENLAANMLMRSGWQKNPVSLLDPFCGSGTILIEAAMMACDMAPGLHRERFGFEHWLRHNDKYWQELLDEAKARASIGITRCKTKFYGSDIDSRIVALAKKNAANAGVLELIDFSVTNALNVKVPEETGYLITNPPYGERLGTVTALLQLYYQLGDKFKAEFGGWNLAVLNSDVELLSALKLKADKQMKMNNGALECAFNLYTVHATNTRRVDPSNINREGDVSDIAVPFVNRVKKNIKQLQKWAKKEGIDSYRIYDADLPDYKVAIDKYLDYVVIQEYTAPVDIPESVTKRRLTDVLITLPGAIGIDPNNIILKTREKQKGTNQYEKIQANKLELITTEYGAKFKLNLKEYLDTGLFLDHRLTRKLVGEKSKDRDVLNLFAYTGTASVHAALGGAKSVKTVDMSNTYTNWAKENFALNGLNDDKYQFVQANCMQWIKTTHDKFDLIFIDPPTFSNSKRMEDSFDVLRDHVPLLSSLIKLLNPNGEIIFSNNKRKFKMEIEALEALNFTVKNIDNQTLPLDFKRNPQIHNTWLLTHGG
>NC_010506.1|WP_041417601.1|2627984_2628518_+|cell-division-protein-ZapC
MLLMPKKDWQWRYSDTYGVLSVSLGSEMEFLTPYKSKSLIPDALSELEFSVEHAKFYIDFIELLSKSLTISDAMKVQLALNGTAAHFLLKPQMPKSWFFDTSSMCVYSELGKVFQLKCRGAIAQVLVVETSIQASLVMLLSNELPLNDNKSLMQFECIKVMHDRLHPLKVSRAIAAA
>NC_010506.1|WP_012324770.1|2626797_2627820_+|quinone-dependent-dihydroorotate-dehydrogenase
MFYKLAQKVMFQMDPEKAHHFALNSLMATANTPLDCFYAQKIAPSPVEFMGVTFPNPVGLAAGMDKDGECIDGFHAMGFGHIEVGTVTPRPQPGNDLPRLFRLKPAKGIINRMGFNNKGVDNLIANLKAAKSGALIGVNIGKNKDTPVEQGKDDYLICMDKVYEYAAYIAVNISSPNTPGLRSLQYGDLLDDLLGSLKAKQKDLAQKHGKYVPIALKIAPDLSDEEIQKIADSLIKNQFDGAIATNTTLSRDGVSGLMNANETGGLSGKPLNLLSTSVIKKLSSCLNGQIPIIGVGGINSAADAIDKLDAGASMVQIYSGFIYQGPKLIKDIIEACRVRK
>NC_010506.1|WP_012324769.1|2621893_2626738_+|NAD-glutamate-dehydrogenase
MALKDAMPSVLLENVVNLIHSKVPNAQAKQVEQFANCLYAHMSKDDLKARNDSDLYGAVLSLWNAANLTEKGESHIRVFNPSQSKHGWQSTHSIIEVIQPDMPFLVDSISMALNRVGITSHMILHTPLSIKRTKGSISQVRYCDDADDKFEKVAVFLIEIDRQSTNKDIKQLEKEIESVLGDVAASVHDWKAMSGKLSSTISELATRPYPGHKQELEEATNFLNYLSNHHFTLLGYRRYDLRKVAGDLELVPDTSSSLGLMNIPGKPQPETGLLLSNFSESARREALDNSLLVLTKSSEKSRVHRPAYVDYVGVKRFDEQGNVIGEDRFLGLYASNLYNRSPREIPLLSEKVQRVLDRSGLTPRSHDYKALMHILETLPRDELIQGNVQELAQVAHGVLEMQDRDKLKLFVRKDGFGRFFSCLVYVSKDRYNTKLREDTQRILAQHFKTNADVEFTTYFSESTLARTHYIVKVDNNNMDVDVAAIENNLSEAARSWEDKLNDALSSTQGEESGTGLTKRYIHAFPRSYKEDVLPSSAVVDIQHLEALDDSHKLGMLFYQPQETALNNSKVRLKLFHKDEPIHLSDVLPMLENFGLRVINERPYELKTSENDTYWILDFLMTVQGSSTQSIADSQVRFQTALADVWDKQLEDDGFNRLLLETTLSGREVSILRAYAKYMRQIDATFSQAYIEETFTRYPQIAELLVKMFIRKFNPKLKTRTLNKFVEQIDLCLEDVSSLDDDRIIRRYLDLINATLRTNFYQVAADGSDKEYVSFKFSPELIPEMPRPLPKFEIFVYSPRVEGVHLRGGKVARGGLRWSDRREDFRTEVLGLVKAQQVKNTVIVPVGAKGGFVCKQLPTEGGREAFFTEGQECYRIFIRALLDVSDNIINGEVVPPVNVVRHDEDDPYLVVAADKGTATFSDIANAISEEYNFWLGDAFASGGSNGYDHKKMGITARGAWESVKRHFREIGIDCQTTDFTCLAVGDMAGDVFGNGMLLSEHTRLVVAFNHMHIFIDPTPDAESSYKERARLFELPRSSWEDYNKELISKGGGIFMRSAKSITLTPEIKKMLETKKASMTPTELLKELLKMKVDLIWNGGIGTYVKASSETHAEVGDRANDTLRVNGNEVQARIIGEGGNLGCTQLGRIEYAANGGRMNTDFVDNVGGVDCSDNEVNIKILLNALVADGEMTLKQRNRLLVDMTDEVSRIVLQDCKDQTRTISVTQVRGAEQLKEQIRFIHYLEKEGKLDRALEFLPSEDELAERLANGKPLTRPELSVLVAYAKMVLKEQLLTPEITDDPFLSQLLIEYFPQQLQEKYSDRMVAHPLRAEIIATSLANELVNDLGLNFVQRMQDETGASVAEAAICYTMAREVFGLAGLTKNITSLNGIIPAVVQGEMLHQLRRNIRRACRWFLRHRNRGQSIQQTVEFFAPVFADLKANVHGYMVEDEVEGIRLEIAALIKEGVTEEVATNVVNMSTLFSALDIAQIAELESKPVALVAQTYFKLGAQVDLHWFLDQISAQPVANHWQALARAAFREELDWQQRSLSSVVLRTCTETCDANSIIAQWIDSNQGLLERWFHMLADFKTSQSHEFAKFSVALRELNLLILHCEGQK
>NC_010506.1|WP_012324768.1|2619310_2621623_+|RND-family-transporter
MLDKIVNGFESFLFRHRIFVILLFMLTTLFLGFQASNLKMDAAFIKNIPLNHSYMQTYLKHQKQFGGANSIMVAVEDTSGDIFNETFFDALKNVHDQLFFIPGVDRAQVKSLFSPSTRFTEVVEDGFAGGPVIPADFSTTELGLSVVRGNIEKAGIVGRLIAEDYSAAMVSAQLMDFDPQTGEPLDTLAFAEQLEQELRTQFENDEIKIHIIGFAKMAGDVAEGAKGVMLFFLIAILVTAVMVYLFSKSLVLTFLPLACSLIAVIWQLGLLTVVGFGLDPMSILIPFLVFAIGVSHSVQMINAVRRRVADGESTKAASASAFRSLLIPGGIALLSDTVGFLTLLAIDIGIIRELAISASLGVGVIILTNLILLPLVISFTKVSVANTSKDPAESKINQLWRKLSLFATPKYATWVLIITAVLYGVGVQQASLMKVGDLQGGAPALHFDSRYNQDTFYITDKFSITTDVMTVIVEAFPEACTYHSVLNQIDEFEWIIGNTPGVESTASLASVAKRVNAGFNEGNPKWQVLPRTTASLVQAVGRVPTTSGLLNSNCSVMPVYLFLKDHKAETIELVIERVKALSAEMDNDKIQFKLASGPVGVMAATNEAVAEAQFPMMLYVYGAVFVLCLISFRSLRATISVILPLYVVSTLAQALMTQLDIGLAVSTLPVIALGVGIGVDYGIYILSTMAVRLRDGMPVQEAYFEALVERGSAVIFTGLTLAIGVSTWFFSALKFQMDMGILLTFMFLVNMLGAIIILPAIGAFFWRKPR
>NC_010506.1|WP_012324779.1|2639142_2639793_+|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MISVYLVDDHELVRTGIRRLLEDERGIKVVGEAGDGETAVQWSRNNEADVILMDMNMPGIGGLEATRKILRYQSHAKIIVLTIHTEDPFPTKVMQAGASGYLTKGATPPEVLQAIRQVAHGQRYLSPEIAQQMALSQFNQTEDNPFKTLSERELQIMMMITNGEKVNDISEQLNLSPKTVNSYRYRYRLFAKLGISGDVELTRLAIRYKMLDTGQF
>NC_010506.1|WP_041418112.1|2639814_2641647_+|excinuclease-ABC-subunit-UvrC
MLSQFDSKAFLQSVSSSPGVYRMYDSEETVIYVGKAKDLKKRLTSYFRKNLPNVKTHALVSHIANIDVTVTHSETDALLLENDYIKQYMPRYNVLLRDDKSYPYILLSHHKHPRLAYHRGPKRHKGSYFGPYPNGGAVRESLHLMQKIFPIRQCEDVYYKARSRPCLQYQIGRCSAPCVAKINDEEYAAQVKLASLFLKGRDQQVMSELVLKMETAAHMLEYEQAARFRDQISALRRVAEQQEVSHTSGDMDVIGAYYASGVACFHLLFIRDGKIFGSRSYYPKVPAQTELDEVLSSFMLQFYLNADSQRTVPKEILLSHDFADLPVLVDAIQSALDKKVEIKTKVRSERAKFLKLALTNATNAVNTRLSHKSTVEQRFLLLEEAIEVSKAVTRMECFDISHTMGESTVASCVVFNREGPNKAEYRRYNISGITPGDDYAAMKQALTRRFDNIEKSGKVPDILFIDGGTGQLRIAQKVVDEKFANLDVAPLLIGVAKGEGRKPGLETLIYGENEQSFTLPADSGALHLIQHIRDESHRFAITGHRNKRQKTRNTSTLESIAGVGPKRRKALLQYLGGIQEVKGASVSELAKVPGISVEMAQTIHDSLRGS
>NC_010506.1|WP_012324781.1|2641692_2642250_+|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MPFNIPIALTLFRLFLLPVFVVIFYLPYSWSPFFAAFVFWLAAVTDALDGYAARKLKQSTRFGAFLDPVADKIMVTTALVLLVAEYNSIWMTLPALFMIGREIVISALREWMAEIGKRGSVAVSWIGKYKTAAQMTAITGLIWHPNDLITYAAYALFYVAAVLTFWSMMSYIMAAWSDLTAESNN
>NC_010506.1|WP_012324782.1|2644580_2645966_+|L,D-transpeptidase-family-protein
MHKGNRVGYVIMALFIQLCATPCVLALDKNSAAINALRYQVQLISLIDPSFSKYNQLLTQDLEEEQLDLTNDIQLEVANFWRSVKIQSRGEGGSDDLYRNVISLEPSSSDYLPISNRIRYLLWVEQTESWQPLVLDIWLKEGDINPAVKVISRRLNWLGDLNFLDPDNSVMTSELVRGVLNFQRRHGLKQDGVIGPETLRWINLTPKKRAALLAENFISKSSYLSTIGPRFLLVNIPAFEMVLVDKGQVQLESRVIVGKPYRQTPRLSSYISNMVLNPSWRVPRTLLRRDLLPKVRKDGAYISEHNFDVFNSAGDEIVKSPEEWQTLAGGRFPYRLVQKPGKDNTLGRYKFYFKNEYNVYLHDTYDKALFEESNRALSSGCIRVEKVESLANWLASNLVSDKQTWVDLQTERDKTQWFAFDNFLAVHLVYWTAWVDESGLAQFRNDIYHQNSMPKLASIQN
>NC_010506.1|WP_041417602.1|2646078_2646627_+|DUF882-domain-containing-protein
MSLVCPARRQLLLGLSGVAMFSVIPSKVQASRSTTGVRSLGFNNLHTGERGFGSYWIDGNYQEKTLSEFSHTLRDHRRNESAPMDKRLYDLLFKLKLSLNVEEDFNVISGYRSPQTNAMLASKNNGVAKKSYHMKGMAMDIALPNVNLSDLRDAAIELKLGGVGYYPRSGFIHVDTGPVRTW
>NC_010506.1|WP_012324784.1|2647301_2647589_+|50S-ribosomal-protein-L25
MSYTIAAQVRTEIGKGSSRRLRHADKVPAVIYGPGKEPVAIVFDHKDIINIQENEDFYTSTLTINLDGSDVKVSVKAMQRHAFKPLIEHVDFTYA
>NC_010506.1|WP_012324785.1|2647656_2649183_-|SpoVR-family-protein
MDNKKKRTPLDDGPDWTFDLLQTYLTEIEKVAAHYKLDSYPNQIEVITAEQMMDAYAGIGMPIGYTHWSFGKKFIETEQSYKRGQMGLAYEIVINSDPCIAYLMEENTITMQALVMAHASFGHNSFFKNNYLFKTWTDASSIIDYLVFAKKYISQCEEAHGAEKVELIIDSCHALMNYGVDRYKRPSEISFKEEQLRQKDREEYLQSQVNDLWRTIPLNQSDAKEKPRSHFPEEPQENILYFIEKHAPLLKPWEREIVRIVRKMGQYFYPQKQTQVMNEGWATFWHYTILNHLYDDGLVTDRFMMEFLQNHTNVVAQPSYNSPYYSGINPYALGFNMFVDIRRICENPTEEDKRWFPDIAGSDWLETLHFAMQNFKDESFISQYLSPNIIRQFKLFGVLDDDKKNYLSVSAIHDDQGYKDIRQMLSQQYNLSNLEPNIQVQSVEVKGDRSLTLRYIPTNRVPLAKSRHEVVKHLHRLWGFDVRLEELNLDGERTVIAACPDQEDEEES
>NC_010506.1|WP_041417604.1|2649191_2650460_-|YeaH/YhbH-family-protein
MANFIDRRLNAKGKSTVNRQRFINRYKQQIKKSVSDAVTRRSVTDVDKGEKIGIPTKDISEPSFHQGQGGVRERVHPGNDQFTRGDKIERPPSGGGQGAGQGEASDSGEGQDDFVFQISKDEYLELLFEDLELPNLQNNRLNKLVEYQTYRAGFTNDGVPANINIVRSLRSSLARRIAMSSSKKKALKELINELEELENTPGAEAERILFLKQEIEELKQKIAKVPFIDTFDLRYNNFAKKEIPSSQAVMFCIMDVSGSMDQATKDMAKRFYILLYLFLTRTYKNLDVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMHQIQKERYPESEWNIYAAQASDGDNWADDSPGCKTLLEKKLLPVVRYFSYIEITNRAHQTLWREYESLQKSFDNIAVQHIKQAEDIYPVFRELFKKQAV
>NC_010506.1|WP_012324787.1|2650510_2652445_-|PrkA-family-serine-protein-kinase
MSIFEHYQQRYEKKLDEEYSLQEFLTICKEDRNSYASAAERLLLAIGEPEVVDTSKDPVLSRIFSNRLISRYPEFKDFYGMEESIQQIVAYLKHSAQGLEESKQILYLLGPVGGGKSSLAEKLKSLMQKIPIYILSADGVRSPVNDHPFCLFNPEEDAELLENEYNIPHRYLKCIMSPWAVKRLHEFGGDISKFRVVKVYPAILDQMAIAKTEPGDENNQDISSLVGKVDIRQLEHFAQNDADAYSYSGALCRANQGLMEFVEMFKAPIKVLHPLLTATQEGNYNGTEGLSALPYNGMILAHSNESEWTTFRNNKTNEAFLDRVYIVKVPYCLRVTEEIQIYNKLLCHSELAKAPCAPGTLETLAQFSVLSRMVAPENSSIYSKMRVYDGESLKDTDPKAKSYQEYRDYAGVDEGMHGLSTRFSFKILSKVFNFDHSEIAANPVHLFYVLERQIEQEQFPSDMAERYLEFLKGYLIPKYVEFIGKEIQTAYLESYSEYGQNIFDRYVTYADFWIQDQEYRDPETGQLFDRSALNAELEKIEKPAGISNPKDFRNEIVNFVLRARANNEGSNPLWTSYEKLRTVIEKKMFSNTEDLLPVISFNAKTSTDDQRKHDDFIDRMMEKGYTKKQVRLLSEWYLRVRKSS
>NC_010506.1|WP_012324788.1|2652724_2653306_-|superoxide-dismutase-[Fe]
MAFELPALPYAKDALEPHISQETIEYHYGKHHNTYVVKLNGLVEGTELAEKSLEEIIKTSSGGIFNNAAQIWNHTFYWNCLSPNGGGAATGAVAKAIDDAFGSFEAFKAQFTDAAVNNFGSAWTWLVKNADGSVAIVNTSNAATPLTDSSVTPIMTVDVWEHAYYIDYRNVRPDYLAHYWELVNWDFVNQNFA

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Crispr_ID: NC_010506_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010506_8

4496985-4497087

Orphan

Consensus_repeat	Method
GTCTAACATCAACACCACCACTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010506_8

>merge|NC_010506|8|4496985-4497087|CRISPRCasFinder
GTCTAACATCAACACCACCACTCCCGCACTGCATCTAGTTTTACATCTCGATTAAGATGGCAGCATATAGAATCTGGCGCGTCTAACATCAACACCACCACTC

>NC_010506|8|8|4496985-4497087|CRISPRCasFinder
GTCTAACATCAACACCACCACTC	CCGCACTGCATCTAGTTTTACATCTCGATTAAGATGGCAGCATATAGAATCTGGCGC
GTCTAACATCAACACCACCACTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010506.1\|WP_041417797.1\|4485676_4486078_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012326286.1\|4499553_4500750_-\|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase	unknown	unknown	gnl\|CDD\|181564
NC_010506.1\|WP_012326283.1\|4495108_4495555_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012326279.1\|4491831_4492473_+\|outer-membrane-lipoprotein-LolB	unknown	unknown	gnl\|CDD\|319984
NC_010506.1\|WP_012325263.1\|4486406_4487630_-\|ISL3-like-element-ISShwo4-family-transposase	unknown	unknown	gnl\|CDD\|376574
NC_010506.1\|WP_012326278.1\|4490310_4491561_-\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NC_010506.1\|WP_012326287.1\|4500948_4501251_+\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012326289.1\|4502911_4503955_+\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NC_010506.1\|WP_012326291.1\|4504472_4505348_+\|CNNM-family-magnesium/cobalt-transport-protein-CorC	unknown	unknown	gnl\|CDD\|226910
NC_010506.1\|WP_012326280.1\|4492475_4493330_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NC_010506.1\|WP_012326292.1\|4505390_4506938_+\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NC_010506.1\|WP_012326276.1\|4488311_4489154_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NC_010506.1\|WP_012326282.1\|4494683_4495097_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012326288.1\|4501350_4502775_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NC_010506.1\|WP_041418273.1\|4493400_4494348_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_010506.1\|WP_012326285.1\|4498697_4499282_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NC_010506.1\|WP_012326277.1\|4489209_4490295_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NC_010506.1\|WP_012326290.1\|4503944_4504421_+\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NC_010506.1\|WP_012326293.1\|4507017_4507518_-\|zinc-ribbon-containing-protein	unknown	unknown	gnl\|CDD\|369304
NC_010506.1\|WP_012326284.1\|4497479_4498571_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583

Protein	Function_ID	Function_description	E-value
NC_010506.1\|WP_041418273.1\|4493400_4494348_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NC_010506.1\|WP_012326292.1\|4505390_4506938_+\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0
NC_010506.1\|WP_012326279.1\|4491831_4492473_+\|outer-membrane-lipoprotein-LolB	gnl\|CDD\|319984	cd16326, LolB, LolB, an outer membrane lipoprotein receptor. This family contains the outer membrane lipoprotein receptor, LolB, which catalyzes the last step of lipoprotein transfer from the inner to the outer membrane. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA transports lipoproteins through the periplasm to LolB, which then localizes them to outer membranes; the protruding loop of LolB has been shown to be essential for the localization of lipoproteins in the anchoring of bacterial triacylated proteins to the outer membrane.	2.29962e-48
NC_010506.1\|WP_012325263.1\|4486406_4487630_-\|ISL3-like-element-ISShwo4-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	1.88698e-69
NC_010506.1\|WP_012326278.1\|4490310_4491561_-\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NC_010506.1\|WP_012326291.1\|4504472_4505348_+\|CNNM-family-magnesium/cobalt-transport-protein-CorC	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	3.71634e-139
NC_010506.1\|WP_012326289.1\|4502911_4503955_+\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	4.64105e-163
NC_010506.1\|WP_012326286.1\|4499553_4500750_-\|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase	gnl\|CDD\|181564	PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional.	0
NC_010506.1\|WP_012326280.1\|4492475_4493330_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	0
NC_010506.1\|WP_012326276.1\|4488311_4489154_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	1.95415e-126
NC_010506.1\|WP_012326293.1\|4507017_4507518_-\|zinc-ribbon-containing-protein	gnl\|CDD\|369304	pfam07295, DUF1451, Zinc-ribbon containing domain. This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein.	8.47558e-59
NC_010506.1\|WP_012326288.1\|4501350_4502775_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NC_010506.1\|WP_012326285.1\|4498697_4499282_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	2.02157e-101
NC_010506.1\|WP_012326277.1\|4489209_4490295_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NC_010506.1\|WP_012326290.1\|4503944_4504421_+\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	1.55755e-60
NC_010506.1\|WP_012326284.1\|4497479_4498571_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0

>NC_010506.1|WP_012326283.1|4495108_4495555_-|hypothetical-protein
MIIFAIFVWGLIPSSLLAEPAPLEIKKVKPKSSDRYINAVHKEIVTKTDDLNKIRYAILEGMLTTKGIAWLYDGEGEGYILARFTYRGDTNVMRIEYNQSLVQLKYHDALGDYECKNLIDDICYKNGRGYYNYIKNLRKSIARQLMRL
>NC_010506.1|WP_012326282.1|4494683_4495097_-|hypothetical-protein
MKKVIASLIIGLSSMAVFDAQAIHSYQDPVPFKGYVKDIGPLLEKVMKRNHWQLSKNDSGSYFADLNYKDYQVQAKLLVQDETLAIELISAQRPNCTKRSCKVDDDTVDDWLVRLRKQIALDVTKAVRDDALRKSFM
>NC_010506.1|WP_041418273.1|4493400_4494348_+|ribose-phosphate-pyrophosphokinase
MPDIKLFAGNATPSLAKKIADRLFCKLGDADVGVFSDGEISVQINENVRGADVFIIQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTCDLHAEQIQGFFDVPVDNVFGSPVLLEDMLDKKLENPVVVSPDIGGVVRARAVAKLLDDSDLAIIDKRRPQANVAQVMHIIGDVQGRDCIIVDDMIDTGGTLCKAAEALKEHGANRVFAYATHPVFSGNAAKNIAESVIDEVIVTDTIPLSKEIQALDKVTQLTMSTLMAEAIRRVSNEESISAMFKH
>NC_010506.1|WP_012326280.1|4492475_4493330_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MSNQLSLGWPAPAKLNLFLHVNHRREDGYHELQTLFQFISHGDLLDFKVTDDGSLKLHSNIGNVVADSDNLILRAAKLLQERTATEKGAEIWLDKRLPMGGGIGGGSSDAATCLIALNALWQTHLSRDELAELGLALGADVPVFINGLSAFAEGVGEKLIQVSPKEYWYLVLVPDVHVSTAEIFQDPDLPRNTPKLDLDSLMSSPWRNDCQELVVKRYPQVAKTLDWLIEYAPSRMTGTGACVFGEFEQQQQAQDALAQLPSNMTGFVAKGTNISPLELRLAQL
>NC_010506.1|WP_012326279.1|4491831_4492473_+|outer-membrane-lipoprotein-LolB
MNNLSYFTKTKLVWVILSLSLLSACATKTPDNLIPVQVNHVSQAQAWEMQGKLAVRTADDKFSTNLYWLHTADINELKLTTMLGTTLLSLTTEEGVAKLEVDGKVYQHDDAQELLTEITGWSIPVNALPLWITGQAAQDDKIINQDLQLRPTVLLSEKDSPPWRVEFNSWQKQSGAEIPRLLELTREQLRLKIQISQWQALSATTLATNNQKK
>NC_010506.1|WP_012326278.1|4490310_4491561_-|glutamyl-tRNA-reductase
MSLVAIGINHKTATVDLREKVAFSPDKIHDAMKSLAKCTKTGEAVIISTCNRTELYTNTGDEAEVIRWFEEYHQLSHEEVEPCLYKFEGQGVVKHLMRVSSGLDSLILGEPQILGQVKQSFAKAREAGSVAITMDRLFQNTFSVAKKVRTETEIGAAAVSVAFAAVSMAKHIFSSISSTKVLLIGAGETIELVARHLKDNGVDSMVVANRTLSRAEGMCDEFGATAITLEQIPDFLPKADIVISSTASPLPILGKGMVEKALKQRRHQPMLLVDIAVPRDIEAEVADLDDAFLYTVDDLQSIIEQNMASRREAAEQAEVIAENESHLFMEWVRSLESVDSIREYRTQSMAIKDELVERAINKLAQGGDSEQLLLELANKLTNKLIHAPTQALTAASRQGDLNSIGQLRSALGLDKN
>NC_010506.1|WP_012326277.1|4489209_4490295_-|peptide-chain-release-factor-1
MKDSVIRKLEGLLERNEEVLALLSDPSVIADQERFRALSKEYSQLEDVVKSFTAFQQATEDLEAAKEMLNEDDPELKEMAQEEMKEAKSVLETLEDELQILLLPKDPNDDNNAFIEIRAGAGGDEAAIFAGDLFRMYSKYSESNRWQIEVMNTNEGEHGGFKEVIAKISGEGVYGKLKFESGGHRVQRVPETESQGRVHTSACTVIVLPEIPEAEAIEINKADLKVDTFRASGAGGQHVNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLSARIQAVEDEKRRSEEESTRRNLVSSGDRSERIRTYNFPQGRMSDHRINLTLYRLNEVMEGVLDVIIEPLILENQADLLAALAED
>NC_010506.1|WP_012326276.1|4488311_4489154_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MYQTLSEALAWASPQLLDVSDTPKLDAEVMLLHIIHKQRGYLYTWPDERLTSEQIDDYTKMVGRRVIGTPIAHIVGEREFWSLPFMVNPTTLIPRPDTEILVETALNLPLAEAAKVLDLGTGTGAIALSLAYEKPSWQITAVDKIIEAVALAKANRSHLKLPQVDIIQSDWFDSVNCYDFNLIVSNPPYIDEEDSHLEEGDVRFEPHSALTAPEHGFADLYHIADCARDYLAPGGYLLLEHGFGQALQLRDKMIELGYENVATVRDFGSNDRCTLGRWPR
>NC_010506.1|WP_012325263.1|4486406_4487630_-|ISL3-like-element-ISShwo4-family-transposase
MSDTLLYQKVLGLEVPWLVSNVQLDEELQRITVVVDYVHNGDLVCPVCQQAGRHYDSRPRTWRHLDTCQFETLIHSKVPRVHCPEHGYQTLQVPWAHESSRYTELLEMRVLKMLAMSTLNAVSKFFKLSWGAIDRIMERAVARGLAHRTTYSTEALLIDETAIKKGRDYVTVLSNSQGQVLAVADGRSKASFNACFEQLPSYTTSLTKTICMDMSPAYISAAKAAFPDAEKRIAFDHFHIAKLLTEAVNAIRRDEIYRLSPSMRQEAHRTRFFWLKRRHNLPAHSQERLNKLVPSLMDTALAWYFKEQARDIWYSNSVRGTKQRWLEWIALIKATNIKPLMSVAETVESKLWGILNAMRFGVSNGLAEAINSQIRLLRVKAMGYRNTERFKRAILFHFGKLDMEFHH
>NC_010506.1|WP_041417797.1|4485676_4486078_-|hypothetical-protein
MTIKHYLYSLWLVPICLMFALLPQTELEEVAVVFNVELMKPIKAVIVGFVIGMVFRLHKVSDYIGTMPLGGLVTGLALGVVGAGLAIGGFVCGVIILLLHGSVNLLGAPLHLLSLGLSAYLIYQVSHWRKVET
>NC_010506.1|WP_012326284.1|4497479_4498571_-|redox-regulated-ATPase-YchF
MGFKCGIVGLPNVGKSTLFNALTKAGIEASNFPFCTIEPNTGVVPVPDARLDALAQIVNPERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFEDDNIVHVANKVSPASDIEVINTELALADLDSCERAITRQAKRAKGGDADAKFEVSVLEKMRPVLDEGDMLRSMELSKEELAAVAYLNFLTLKPTMYIANVAEDGFENNPHLDTVREIAAKENAVVVAVCAAIESELAEMDAEDREEFMADLGLEEPGLDRVIRAGYDLLTLQTYFTAGVKEVRAWTVPVGASAPKAAGVIHTDFERGFIRAQVMAYDDFITYKGEAGAKEAGKLRVEGKTYIVKDGDVMHFLFNV
>NC_010506.1|WP_012326285.1|4498697_4499282_-|aminoacyl-tRNA-hydrolase
MSNIKLIVGLANPGEKYAQTRHNAGAWYVQELARVCGATLVADSKYFGLTARVTLHGKDVRLLIPSTFMNLSGKSVGAMANFFRIEADEILVAHDELDMEPGVAKFKLGGGHGGHNGLKDIIASLANNKGFYRLRIGIGHPGDKSQVSNYVLGKAPGTEQAAIEDVIDEAVRSTEVLFNQDMAKAMNRLHAYKA
>NC_010506.1|WP_012326286.1|4499553_4500750_-|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase
MSESQVKPVSKDVVILGGGMVGAATAIGLAQLGLNIAVIEAFEPEPYNDKQEIDIRVSAVSVASENLLERLGALAGLSQMRRAAYLGLETWELEGFITQFHADQVGVTHLGHIVENRLIQLSLWEQFKQYDNIELLSPVRVERFSRHDDAVVVHLNNATCIEAKLLVGADGANSQVRQWAGIGLTGWDYAQSAMLINIKTAQGQQDVTWQQFTPNGPRSLLPLPGNHASLVWYDDANRIAQLSLMSEKALGEQIKRHFPARLDRDFEVLQKGSFKLTRRHAQTYYSDNVVILGDAAHTINPLAGQGVNIGFKDVEAIISSVSSSLSKGEAWWEEGTLKAYEKLRYQDNQLMMTAMDLFYAGFSNELLPLKVMRNAALKIANIDSPIKKHVLMYAMGLK
>NC_010506.1|WP_012326287.1|4500948_4501251_+|hypothetical-protein
MKIMTPLALLAASLLPLTASADLVKQQNKAKPMETITVTYREPTDYALYQYTTDMLVNFRLQIQADIYQQARTSIMKMANTTPYMSAMHQAPEQEQNSTE
>NC_010506.1|WP_012326288.1|4501350_4502775_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MSKKLHIKTWGCQMNEYDSSKMADLMDEYKGYTLTEEAEEADVLLLNTCSIREKAQEKVFHQLGRWKKLKDKNPNLIIGVGGCVASQEGKVIKDRAQCVDLIFGPQTLHRLPEMIDQIEAGGKAVIDVSFPEIEKFDRLPEPRADGPSAFVSIMEGCSKYCSFCVVPYTRGEEVSRPLDDVILEIAQLAEQGVREVNLLGQNVNAYRGATHDDEICTFAELLRYVAAIDGIDRLRFTTSHPIEFTQDIIDVYEDTPELVSFLHLPVQSGSDRILTQMKRGHMAIEYKSIIRRLRKARPDIQVSSDFIIGFPGESKQDFEDTMKLIEDVQFDHSFSFIYSARPGTPASDLPDDVTLDEKKERLAILQDRITQQAMRYSRQMLGTVQRILVEGPSVKNPMELRGRTETSRVVNFEADPKHIGSFVDVEIVDVYTNSLRGNFIRGEDEMDLRRSLRPSDILAKHKKDDELGVTQYIP
>NC_010506.1|WP_012326289.1|4502911_4503955_+|PhoH-family-protein
MSNKLTTLNLYLEPADTRRLLSLCGPFDDNIKQLERRIGVEISYRDNHFQIVGQAKNCLSVNNLLKSLYVETQSVKGSTPDLEPDTVHLAIQEAVALEAELPRDDKELYIKTKRGVIKPRNPNQSDYVANIATHDITFGIGPAGTGKTYLAVAAAVDALERQEVRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMMGFEKVERLIERNVIEVAPLAYMRGRTLNDAFIILDESQNTTVEQMKMFLTRIGFNSRAVITGDITQIDLPKHQKSGLRHAIEVLSEVEEISFNFFQAKDVVRHPVVARIVEAYEEHDQKAQIAKAKRENHYKLQEATENEH
>NC_010506.1|WP_012326290.1|4503944_4504421_+|rRNA-maturation-RNase-YbeY
MSTSHTKLELALDLQIATDNKQLPTQQDFELWVRTALRNTMTEAELTVRVVDAEESQALNSTYRGKDKPTNVLSFPFEAPAEIELPLLGDLIICASVVEHEAIQQNKPLQAHWAHMVVHGCLHLLGYDHINDIEAEEMESIETQLIESLGFNNPYKEQ
>NC_010506.1|WP_012326291.1|4504472_4505348_+|CNNM-family-magnesium/cobalt-transport-protein-CorC
MSDDIPPSTSAQKKSWLDKVSQLFQGEPQSRDDLVEVIHDAELREVISEDTREMIKGVLEVSDLRVRDIMIPRAQIVALQIDDSVTELLSTVISSAHSRFPVVNEDKDHIEGILLAKDLLQYGFKNSDEPFSLSQVIRPAVVVPESKRVDVLLKEFRSQRYHMAIVVDEYGGVSGLVTIEDILEEIVGEIEDEFDHDSAEETEIRKVSKLVYMIKALTPIEDFNESFNTQFSDEEFDTVGGLVSHAFGHLPERNEKVTIDGIEFTVISADTRRLLQLRVKLPDPSIEEKSE
>NC_010506.1|WP_012326292.1|4505390_4506938_+|apolipoprotein-N-acyltransferase
MLNKLRASAHHSKIRLVLAYFAGASTTLAFAPYSIWPIYLVAMAFALHLSRALSAKQSFNFWLSFGFGCFSVGISWVHVSMDKFGGLPLIASIGLMALLALYLALYPALSGYLLQKLSPKNPLTRNLLLFPILWTLTEWARGWVLTGFPWLWAGYSQTEGPIKELASVIGVLGLSYLIAMLAGSLALCLQKRWHSAAIILPLLITATYLSPMLSSVEAKGESVKVTLVQGNIAQSMKWEPEALWPTMLKYMDLSRPELADTDIFIWPEAAIPAPESMVADFLDNANKVANLNNSAIITGIISQQQDNFYNSLIVLGNHDKPEQEQADYTIGGGNEFKKHHLLPIGEFVPFESLLRPIAPFFNLPMSSFSRGEYQQPNLEAVGHQIAPAICYEIAFPELLRANVNEDTELLLTVSNDAWFGSSNGPLQHMEIAQMRSIELGRPLVRATNTGVTAVVDEYGNITHKLPQFEAGVLVADIPLVKGSTAFSKWGEWPILLWSSLLLVLFLFRFVKHRLD
>NC_010506.1|WP_012326293.1|4507017_4507518_-|zinc-ribbon-containing-protein
MSARSAELLSLYEALLAKVKADYLNDNSMTVKELFAVVTNGKEFLSLKEQAKEDELALVEQFLKRDIASYLQEKNDTDLSHSPTMITVENTVWHWLSGITDRSQIEWHEVLQDFKHQGHYQSGEIVGQGNMVCIHCGHEMKIEFPGVIPDCPECDESEFTREALAP

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Crispr_ID: NC_010506_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010506_9

4936434-4936535

Orphan

Consensus_repeat	Method
AGGTTCTAGGTTCTAGGTTCTAG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_010506_9

>merge|NC_010506|9|4936434-4936535|CRISPRCasFinder
CGCTAGTTATTTCTAGGTTCTAGGCTTGATTACTAGCAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAG

>NC_010506|9|9|4936434-4936535|CRISPRCasFinder
CGCTAGTTATTTCTAGGTTCTAG	GCTTGATTACTAGC
AGGTTCTAGGTTCTAGGTTCTAG	GTTCTAGGTTCTAGGTTCT
AGGTTCTAGGTTCTAGGTTCTAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010506.1\|WP_012326641.1\|4929058_4929640_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_010506.1\|WP_012326647.1\|4933080_4933998_+\|DUF692-domain-containing-protein	unknown	unknown	gnl\|CDD\|235447
NC_010506.1\|WP_012326658.1\|4944863_4945160_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012326643.1\|4930201_4931038_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NC_010506.1\|WP_012326659.1\|4945170_4946433_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_010506.1\|WP_012326652.1\|4937537_4938125_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012326646.1\|4932538_4933006_+\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012326653.1\|4938438_4939830_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|227333
NC_010506.1\|WP_012326650.1\|4936660_4937242_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_010506.1\|WP_012326657.1\|4943992_4944754_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NC_010506.1\|WP_012326645.1\|4931629_4932061_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_010506.1\|WP_012326655.1\|4941439_4942654_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|274576
NC_010506.1\|WP_012326651.1\|4937315_4937537_-\|hypothetical-protein	unknown	unknown	unknown
NC_010506.1\|WP_012326640.1\|4927879_4928932_-\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NC_010506.1\|WP_041417814.1\|4927198_4927636_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188306
NC_010506.1\|WP_012326648.1\|4933984_4934791_+\|DUF2063-domain-containing-protein	unknown	unknown	gnl\|CDD\|378264
NC_010506.1\|WP_012326654.1\|4939848_4941306_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NC_010506.1\|WP_012326644.1\|4931110_4931554_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_010506.1\|WP_012326656.1\|4942679_4943981_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|274576
NC_010506.1\|WP_012326642.1\|4929801_4930092_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985

Protein	Function_ID	Function_description	E-value
NC_010506.1\|WP_012326641.1\|4929058_4929640_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.47553e-10
NC_010506.1\|WP_012326647.1\|4933080_4933998_+\|DUF692-domain-containing-protein	gnl\|CDD\|235447	PRK05409, PRK05409, hypothetical protein; Provisional.	7.28071e-167
NC_010506.1\|WP_012326643.1\|4930201_4931038_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.00816e-35
NC_010506.1\|WP_012326659.1\|4945170_4946433_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.33401e-22
NC_010506.1\|WP_012326653.1\|4938438_4939830_-\|PAS-domain-containing-protein	gnl\|CDD\|227333	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].	2.63342e-36
NC_010506.1\|WP_012326650.1\|4936660_4937242_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.72158e-20
NC_010506.1\|WP_012326657.1\|4943992_4944754_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	6.09242e-111
NC_010506.1\|WP_012326645.1\|4931629_4932061_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.59966e-27
NC_010506.1\|WP_012326655.1\|4941439_4942654_-\|FtsX-like-permease-family-protein	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	1.44139e-35
NC_010506.1\|WP_012326640.1\|4927879_4928932_-\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	2.56412e-168
NC_010506.1\|WP_041417814.1\|4927198_4927636_-\|hypothetical-protein	gnl\|CDD\|188306	TIGR03319, RNase_Y, ribonuclease Y. Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch. [Transcription, Degradation of RNA].	0.000398132
NC_010506.1\|WP_012326648.1\|4933984_4934791_+\|DUF2063-domain-containing-protein	gnl\|CDD\|378264	pfam09836, DUF2063, Putative DNA-binding domain. This family represents the N-terminal part of a Neisseria protein, UniProtKB:Q5F5I0, Structure 3dee. It runs from residues 31-117 as a helical bundle with 4 main helices. \From genomic context and the fold of the C-terminal part, it is suggested that this protein is involved in transcriptional regulation.	4.71987e-14
NC_010506.1\|WP_012326654.1\|4939848_4941306_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.80117e-149
NC_010506.1\|WP_012326644.1\|4931110_4931554_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	2.57156e-23
NC_010506.1\|WP_012326656.1\|4942679_4943981_-\|FtsX-like-permease-family-protein	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	1.43945e-27
NC_010506.1\|WP_012326642.1\|4929801_4930092_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	8.64457e-07

>NC_010506.1|WP_012326648.1|4933984_4934791_+|DUF2063-domain-containing-protein
MTSLKQTQALFMTYILSDKESDADQDDKFSAFSSIITAKSEEDGKTRLGIYASAYRLRLIETIETDHEILGVYLGDELFDKMAQAYINAHPSSFRSLRHFCDALPQFLSDDSFFSQYPILSHIATFERRLLNAFDAEEQPRASFTELEQLAPEHWPESQFRFHSSVQIFQCQSNAVESWQALKNEQTPPQPDYSIASAWLLWRGEERLTEFISLTEYQLVLLEGFIKGNTLAQQCELMLNYFDEEQAPVKVLQAIRAWFDMGIIRAIA
>NC_010506.1|WP_012326647.1|4933080_4933998_+|DUF692-domain-containing-protein
MTETALTQDFLGFGLGLRTNHFDHVLTNRPDIDWFEVLSENYMVAGGKPRYYLEAIAEQYPIVMHGVSMSIGSTDPLDREYLTALKKLANDVQPQWISDHICWTSIHGVNSHDLLPLPYTEETIKHVAERVRQVQDFLGRRILLENVSSYLSYQDSTMDEWAFLNAVAEQADCLILLDINNIYVSARNHNFDPVTYLNKIDPKRVQQFHLAGHSDYGDYVVDTHDHDVPNSVWELYRIALERFGAISTMIERDGNIPEFPALEQELQIARDIAEKTLPELASQLASINEQAQKQSLKTGMFDDQS
>NC_010506.1|WP_012326646.1|4932538_4933006_+|hypothetical-protein
MNTKAQATLTGAALALTMAGLTGCASTEKSETTQAAMAKGSTDLVHCYGVNVCKGHNDCKTATNACGGHASCKGTGFVAMPSKSCADVGGKIQDDWVGSIAKTDLVHCYSVNVCKGHNDCKTANNACGGHASCKGTGFVSAPAKSCADIGGKVGA
>NC_010506.1|WP_012326645.1|4931629_4932061_-|universal-stress-protein
MRTRQILCPTDFSETASHALRYAIEMANFYQVGLRLIHVVDQPVGAENYQILAITPEELAKSMEDAAADKMRHLLSDLKSELPMETVIRRGSPIEEILADAVEFDVGMIVMASHGRSGLSHFLHTNVAEGIANRAKCPVLVVK
>NC_010506.1|WP_012326644.1|4931110_4931554_-|universal-stress-protein
MRTRQILCPTDFSETASHALKYAIEMANLYHVDIRLLHINSEALGHHNYGIAVETPAELEDEMENFSKEKLTKLAGEVEAYLDEALSVIPVVRSGDVMAQIIEESIEQEVGMIVIASHGHTGLSHLLNPNVSEAVANKAKCPVLVVK
>NC_010506.1|WP_012326643.1|4930201_4931038_+|LysR-family-transcriptional-regulator
MKLRSIHYFQSVYEQGSITAASRQCFVSQPSITAAISQLEQQLNVELFVRHTGGVRPTSAADKLYPLAREMSENEQAILHLFKDSPAPVPLRLGLMRSLGAQRMSDLLTELTQRIDNLELTLVEPDEPSDARVVLSQSASSSEDFIPIWEDKYQLAIPCNWSLASKPIIKIEDLDGLPFINRTPCDVQDRLKHAMTKCGAQFQSRANIRTIEYTWPMVCAGVGAALLPDWQEIKHNKALVLRPIEGEKLIKQIGLAYSASRLSEPAITAVISVCRDKA
>NC_010506.1|WP_012326642.1|4929801_4930092_+|YkgJ-family-cysteine-cluster-protein
MTIDVTNLNEPEITCATCQACCCRLQVLIISDTGVPDEHIEEAEWGGEVMRRLDDGWCSALDRETKMCTIYEQRPWICREFEMGSYECKTERTDNM
>NC_010506.1|WP_012326641.1|4929058_4929640_+|TetR/AcrR-family-transcriptional-regulator
MRNAEFDREKVLRSAMTAFMDKGYGKTSMQDLTKATGLHPGSIYCAFDNKRGLLLAALEQYKIDRTTEFQGFFTGKKSVLAELKDYLDNTVQECISCEAAKACLLTKALNEMAQQDEEIQKIITENLANWQQGLADVFTLAKEKGELSAERDSQHLARFLAMGIYGLRTFAHTHPQGETLQELADQLFKDICA
>NC_010506.1|WP_012326640.1|4927879_4928932_-|alkene-reductase
MTDNLFQTFALNETITLQNRILMAPLTRCMADEELVPTQAMADYYARRAEAGLIISEAVIIRPDGQGYPNTPGLFSSAQIDGWRVVTDAVHQGGGKIFAQLWHTGRVAHPHFFKKTGSTDVLAPSAVGVEGSVPRMRELSYQVPKAVTHEDIAQLVADYSQAASNAIDAGFDGVEIHGANGYLLDQFLHHDSNHRQDEYGQTPENMARFALEVVDAVAQRIGNERTALRVSPGAYFNMASDERDRAVFDYLLPQLELRNLAFLHIGIFDDAMKFDYLGGSASAYVRSVYNKTLVGVGSYSAESGSSAIAQDKFDLLAIGRPFIANPDYVSRVREGKELVEYSDEMLANLV
>NC_010506.1|WP_041417814.1|4927198_4927636_-|hypothetical-protein
MNINGFSTSLKPETRSVSEGYITPKLDRGSLDKTSAQVSTADTASISQAGKTAEKLDVGSAMVQLKDRGAEAAEKSEAESSSIIDKQIERIKERIEQLKQDLKGLQGDKSEVAQKKREMINAEILQLSGMLIKLYEEKAKQEGSE
>NC_010506.1|WP_012326650.1|4936660_4937242_+|TetR/AcrR-family-transcriptional-regulator
MSKPDKKQAILDTALTLFVSQGFYATSTASIAKKAGVATGTLFHHFPSKDELMNHLFISIKQEFADAILTSVTDSGNLKQDAQHLWYAAIQWAIENPLKQEFFQQYSMSPSIPLEIREQAMNSILSFMGALMQKGHALGLLADYPLSLMQDNCHGQFLAATRYFLDNPGKWQEPTHKEASFAMFWNAMRTDNG
>NC_010506.1|WP_012326651.1|4937315_4937537_-|hypothetical-protein
MMLYTKLILLISILFFSTATYAAEPEHDDKAHEKAEKNLDDKHWNDAHGSGVPEKKGRNPGGKKESKSKKEKE
>NC_010506.1|WP_012326652.1|4937537_4938125_-|hypothetical-protein
MSLYLGFTFFSLFIGFLLGASNTPVIGLFLTSIFGFIGTLLGTQYVLNINNSNKYGAKFLGISMLVVSISLFIGTVSGGFYRTESNIQVNQILPWEGAAKPKSTKEALDWILVKEKMNLLGYSDEDVAKIYQIRSEEIELLAEIIKQESTQEEDLYSSELPTVIYDESAPFYLVFPKEITPKKRANRAPSSINGD
>NC_010506.1|WP_012326653.1|4938438_4939830_-|PAS-domain-containing-protein
MALFSFLSLRTKLILGAVFASQVGTGLSLFVMFKMTQPQTFIAASMFSFVMIFMLAALCAWVISYYATRTLATSLNALEVGLLNFKDNDFSVTIPASGEPQLQSLIELFNESAETLRQERQYIYQRELLLDKVIQSSPNVMLLLDDDQRIIYANDAARHLLNQGNHINGFLLQEVMDKVSDELSSALSKPKGGLFTLSVEGQDEDETWHLSRGQFLLNGQYHHLVLLRQMTHELNRQEVAVWKKVIRIISHELNNSVAPIASMVNSGRMLTKDLNDPKLKMIFDTIEDRTSHLSQFIFNYARFAKLPLPKKERVDWRKLVDQLGQHYQFTLLGELPSDSGEFDLIQMEQVLLNLLKNAHESGSKIAGVSLSIEASSPLNANNRALDSEGRVMSGTVIEVKDEGSGMPAEVLKQALLPFYSTKQSGTGLGLPLCREIIEAHDGRISLHNRDDMGLCVRVWLPSV
>NC_010506.1|WP_012326654.1|4939848_4941306_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MDTILIVDDNQAVCNALSLMLELNGFNTLTCLSPEVALELIRLHDIALVVQDMNFTQDTTSGEEGKALFYALRELQPELPIVLLTAWTQLEIAVELVKEGAADYMGKPWDDTKLVTSINNLISLHALSKANTQLTRVENDRMSAIKGADLCGIVFGSGAMQRSVDLALQIARSDVSVLITGPNGAGKDKLADIIHANSSLKTKPFIKVNVGALPIDLLEAELFGAEAGAFTGANKTRIGRFEAADGGTLFLDEIGNLPLSGQIKLLRVLQTGEFERLGSHQTKKVNVRVLSATNADLAEDIKQGCFREDLFYRLNVIELALAPLNQRQDDILPLVEHFIGREFSLNKQAQESLVAHPWPGNVRELENACKRAVILASSPKLTPSDFGLGSISHLSEDDSSVRSAQVQALVQSQVQAQSDTASSISPESTEQLDSRGAETDKTQLEKSEIEAALIQHGGVIARVAKSLGLSRQALYRRMEKFGIDK
>NC_010506.1|WP_012326655.1|4941439_4942654_-|FtsX-like-permease-family-protein
MLQIKPIISTLRHNKSGPLLLLLQIILSVAIVANASFIINERVQLMSRDSGLVEDEVFDFTVYNFEEGVDYTAQNSRDMDIIRGLAGVKASTTSSMTPLSGGGWSSTFTYGQSEETAKDAPQAAIYYGDEQMVETLGVEMIAGRNFYQSEIESGHPNTANLAIVSQAFATVTWGDEPAVGQTIYAGGYGEQALKVIGVVKTLQGAWVNSSHLDNAIILNVELGLTSFNRFLVRAEPGLMTELKPQIIAALHKENKNRVIDGFTMITEHRKRVYRDHELMATVLSMMVILLLLITSLGLAGMVMFNIERRTKQIGTRRALGAKKRDIVSFFLVENYIICLTGGVIGALVAVQLGRQLMSVYSLPQLELIYPIATVVGLVVLTTVAVILPARKAAKISPAIATRSV
>NC_010506.1|WP_012326656.1|4942679_4943981_-|FtsX-like-permease-family-protein
MFFYYLDLAWRSIKKTPLLSLLMVLAISIGIGTTITSLNIYQMANINPAGDRSSQLYEVRLMSQGLDSWEEINEQITYQDSFNLRKNSIATRQSPMFRTGMAVQTDDDNFVPILEGARVADSDFFGLFSVEFLYGSSWGKQVDIDPAYQVVIREDLNKEVFGGENSVGRTIYLNQKPYQIVGVIKYWNPSPKYYDVNNGAFNDAERMFVPFSLAPIEEFESWGNNQSWKREDIVTYADRLASETHWNQYWVELNTPEQVKEYQLWLSNYIEQQKLIGRFEMPEAKADLSDVATWLKVNNVVPEDNKVLVGLSVLFLIVCLVNMLGLLLAKFLKRAPEVGVRRAIGASRAQIFAQHMVEVGVIGFFGGVIGLLWAWGSLSILSAHFKLEEALTQLGMSMWVLAPGVAIASALIAGLYPAWRICSTNPSVHLKSQ
>NC_010506.1|WP_012326657.1|4943992_4944754_-|ABC-transporter-ATP-binding-protein
MLSMKSISKVFKTDLVETHALRDFNLEVNEGEFVAVTGPSGSGKTTFLNIAGLLEGFTHGDYFLDGVNISNLSDNKSAAIRNEKIGFIFQGFNLIPDLNLAENVEVPLRYRGFNAAERKRRVQHALEQVGLAARMKHLPSQLSGGQQQRVAIARALAGEPRFLLADEPTGNLDSMMARQVMELLEEINKAGTTIIMVTHDPELARRAQRNIQIVDGQVCDFTMYQGGAEKPHLVSETDSASDGQQAQTEQVAG
>NC_010506.1|WP_012326658.1|4944863_4945160_-|hypothetical-protein
MNRLQQKVEMQLPQERALSPQKVITVSALLILLVAVQISTQSVEDWFVFGLNVLEVTAPMNVSVHDVSNVGSSVAGGLEHLREMVWSVVKALVEFIFC
>NC_010506.1|WP_012326659.1|4945170_4946433_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MIQDTSGQDTVVQASKASRLKWPLIATAAALLVSGLVWSSVGGSNVSESISRSDLRFATLEQGTLTRDIATTGKIVAANAPILYSTDQGTVTLLAKPGDKVELGDVVATIESHQLTNSLKQQEALLEGMQSSLERARLDARREQLKAQQTLDMAKVDLEAADRESRRGDELIENKLISKIDFEKGKDDLHKAKLLSAHAQQEAELTRDTLAFEIKNKASEVNRQKLVVSELERQVAALNIKAPVGGIIGNWLTEQKARIGQSQPILTVVDLSAFEAELAVPESYADELGLGMDVELKFGELTLMGELSSISPEVRNREVTARVRFEQDDRLHLRQNQRLSARVLLENRPNVLMVKRGAFVSTGGGREVYTMNGDIAEQTEIQLGARSMSHIEVLQGGKAGDIWVISSVQPFNQAQQVLVR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010506_7	7.2\|2638666\|50\|NC_010506\|CRISPRCasFinder	2638666-2638715	50	NC_010506.1	2638461-2638510	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	154028-154046	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	154035-154053	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	154042-154060	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	154049-154067	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	154056-154074	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	154063-154081	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	154070-154088	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	154077-154095	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	154084-154102	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	154091-154109	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	154098-154116	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546682-546700	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546689-546707	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546696-546714	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546703-546721	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546710-546728	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546717-546735	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546724-546742	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546731-546749	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546738-546756	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546745-546763	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546752-546770	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	546759-546777	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	721933-721951	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	721940-721958	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	721947-721965	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	721954-721972	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	725883-725901	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	725890-725908	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	725897-725915	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	725904-725922	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	924176-924194	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	924183-924201	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1150829-1150847	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1150836-1150854	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211517-1211535	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211524-1211542	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211531-1211549	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211538-1211556	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211545-1211563	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211552-1211570	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211559-1211577	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211566-1211584	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211573-1211591	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211580-1211598	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211587-1211605	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211594-1211612	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211601-1211619	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211608-1211626	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1211615-1211633	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1434834-1434852	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1492094-1492112	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1492101-1492119	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1492108-1492126	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1492115-1492133	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1492122-1492140	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	1492129-1492147	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	2041207-2041225	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	2041214-2041232	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	2041221-2041239	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	4373842-4373860	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	4373849-4373867	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	4373856-4373874	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	4399252-4399270	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	4936522-4936540	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	4951257-4951275	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	4951264-4951282	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	4951271-4951289	0	1.0
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	2041235-2041253	1	0.947
NC_010506_9	9.2\|4936494\|19\|NC_010506\|CRISPRCasFinder	4936494-4936512	19	NC_010506.1	4625090-4625108	1	0.947

1. spacer 7.2|2638666|50|NC_010506|CRISPRCasFinder matches to position: 2638461-2638510, mismatch: 0, identity: 1.0

gaagccccaagtagagatacttggggctttttcgtttcaagatagttagt	CRISPR spacer
gaagccccaagtagagatacttggggctttttcgtttcaagatagttagt	Protospacer
**************************************************

2. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 154028-154046, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

3. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 154035-154053, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

4. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 154042-154060, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

5. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 154049-154067, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

6. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 154056-154074, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

7. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 154063-154081, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

8. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 154070-154088, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

9. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 154077-154095, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

10. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 154084-154102, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

11. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 154091-154109, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

12. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 154098-154116, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

13. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546682-546700, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

14. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546689-546707, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

15. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546696-546714, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

16. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546703-546721, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

17. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546710-546728, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

18. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546717-546735, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

19. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546724-546742, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

20. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546731-546749, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

21. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546738-546756, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

22. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546745-546763, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

23. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546752-546770, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

24. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 546759-546777, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

25. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 721933-721951, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

26. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 721940-721958, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

27. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 721947-721965, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

28. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 721954-721972, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

29. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 725883-725901, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

30. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 725890-725908, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

31. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 725897-725915, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

32. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 725904-725922, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

33. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 924176-924194, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

34. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 924183-924201, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

35. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1150829-1150847, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

36. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1150836-1150854, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

37. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211517-1211535, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

38. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211524-1211542, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

39. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211531-1211549, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

40. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211538-1211556, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

41. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211545-1211563, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

42. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211552-1211570, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

43. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211559-1211577, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

44. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211566-1211584, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

45. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211573-1211591, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

46. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211580-1211598, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

47. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211587-1211605, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

48. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211594-1211612, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

49. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211601-1211619, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

50. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211608-1211626, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

51. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1211615-1211633, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

52. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1434834-1434852, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

53. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1492094-1492112, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

54. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1492101-1492119, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

55. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1492108-1492126, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

56. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1492115-1492133, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

57. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1492122-1492140, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

58. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 1492129-1492147, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

59. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 2041207-2041225, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

60. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 2041214-2041232, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

61. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 2041221-2041239, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

62. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 4373842-4373860, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

63. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 4373849-4373867, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

64. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 4373856-4373874, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

65. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 4399252-4399270, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

66. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 4936522-4936540, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

67. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 4951257-4951275, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

68. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 4951264-4951282, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

69. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 4951271-4951289, mismatch: 0, identity: 1.0

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggttct	Protospacer
*******************

70. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 2041235-2041253, mismatch: 1, identity: 0.947

gttctaggttctaggttct	CRISPR spacer
gttctagattctaggttct	Protospacer
*******.***********

71. spacer 9.2|4936494|19|NC_010506|CRISPRCasFinder matches to position: 4625090-4625108, mismatch: 1, identity: 0.947

gttctaggttctaggttct	CRISPR spacer
gttctaggttctaggtcct	Protospacer
****************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1734208 : 1741681

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012324017.1\|1734208_1735873_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	3.5e-40	28.1
WP_012324018.1\|1736229_1737486_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	7.8e-93	52.6
WP_012324019.1\|1737635_1738085_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_012324020.1\|1738108_1739248_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.4e-51	34.1
WP_012324021.1\|1739251_1739914_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.9e-28	33.0
WP_012324022.1\|1739985_1741089_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.7e-65	38.9
WP_012324023.1\|1741198_1741681_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-29	46.4

DBSCAN-SWA_2

3083104 : 3136114

Bacillus_phage(20.0%)

transposase,protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012325140.1\|3083104_3084439_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_012325141.1\|3084441_3084972_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_012325142.1\|3084971_3086246_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_012325143.1\|3086314_3087322_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_012325144.1\|3087285_3089052_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_012325145.1\|3089054_3089480_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_012325146.1\|3089486_3090962_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_012325147.1\|3091051_3091540_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_012325148.1\|3092377_3095068_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012325149.1\|3095137_3096181_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.5e-20	38.7
WP_012325150.1\|3096360_3097995_-	phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
WP_012325151.1\|3098676_3099096_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012325152.1\|3099108_3100101_-	CDF family Co(II)/Ni(II) efflux transporter DmeF	NA	NA	NA	NA
WP_049774469.1\|3100367_3100874_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_012325154.1\|3100946_3101588_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA
WP_012325155.1\|3101605_3103432_-	phosphogluconate dehydratase	NA	NA	NA	NA
WP_041418152.1\|3103441_3104140_-	6-phosphogluconolactonase	NA	NA	NA	NA
WP_012325157.1\|3104152_3105625_-	glucose-6-phosphate dehydrogenase	H6WFS4	Cyanophage	5.8e-79	35.9
WP_012325158.1\|3105933_3106788_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_012325159.1\|3106972_3108412_+	pyruvate kinase	NA	NA	NA	NA
WP_012325160.1\|3108534_3110811_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_012325161.1\|3110834_3111470_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012325162.1\|3111665_3113504_+	M2 family metallopeptidase	NA	NA	NA	NA
WP_012325163.1\|3113807_3114377_+	DUF4440 domain-containing protein	NA	NA	NA	NA
WP_041417640.1\|3114655_3114844_+	hypothetical protein	NA	NA	NA	NA
WP_012325165.1\|3114873_3117042_-	EAL domain-containing protein	NA	NA	NA	NA
WP_012325166.1\|3117197_3117485_-	DUF406 family protein	NA	NA	NA	NA
WP_012325167.1\|3117593_3118085_-	hypothetical protein	NA	NA	NA	NA
WP_049774326.1\|3118853_3119960_+	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA
WP_012325169.1\|3119971_3120640_-	7-carboxy-7-deazaguanine synthase QueE	A0A2I7S8X1	Vibrio_phage	3.5e-15	28.5
WP_012325170.1\|3120861_3121563_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.0e-78	62.7
WP_012325171.1\|3121550_3122159_+	rhombosortase	NA	NA	NA	NA
WP_012325172.1\|3122179_3124195_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_012325173.1\|3126284_3128189_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_012325174.1\|3128299_3128878_+	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_012325175.1\|3128880_3129450_+	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_012325176.1\|3129443_3131798_+	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_012325177.1\|3131801_3132854_+	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_012325178.1\|3132883_3133510_+	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_012325179.1\|3133506_3134205_+	electron transport complex subunit E	NA	NA	NA	NA
WP_012325180.1\|3134258_3134897_+	endonuclease III	NA	NA	NA	NA
WP_012325181.1\|3135196_3135607_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_012323117.1\|3135679_3136114_-\|transposase	IS200/IS605-like element ISShwo2 family transposase	A0A0H3UZM0	Geobacillus_virus	5.2e-12	31.8

DBSCAN-SWA_3

4090571 : 4101086

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012325943.1\|4090571_4093196_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.2e-80	39.0
WP_012325944.1\|4093487_4094549_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	7.8e-110	60.0
WP_012325945.1\|4094878_4097455_+	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	2.4e-32	23.2
WP_012325946.1\|4097665_4098634_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.1e-33	36.3
WP_012325947.1\|4098711_4099608_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_012325948.1\|4099704_4100340_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.8e-36	51.2
WP_012325949.1\|4100336_4101086_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	51.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010506

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection