CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010483	Thermotoga sp. RQ2, complete sequence	8 crisprs	cas14k,cmr1gr7,cmr6gr7,cas10,cmr4gr7,cmr5gr11,cmr3gr5,DEDDh,WYL,cas3,cas3HD,cas6,csx1,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx22,cas8b1,cas7,cas5,cas4,cas1,cas2,csa3,cas14j	0	4	4	0

1. NC_010483

CRISPR-Cas detection and classification

Crispr_ID: NC_010483_1

• CRISPR_ID: NC_010483_1
• CRISPR_location: 544183-545204
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 15 spacers

Consensus repeat of NC_010483_1

Consensus_repeat	Method
GTTTCAATACTTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATANTTCCTTAGAGGTATGGAAAC	CRT

spacers of NC_010483_1

>1.1|544213|39|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TTTCTTATATGATGTATGACCAGTCCAACTTGTTTTCAT
>1.2|544282|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CCGATATTGAAAAAGAGCTCGAATAATGGAAAAATG
>1.3|544348|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TATATTTTGCCGTGTCAGGATATCCGATGTATGATT
>1.4|544414|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
AGCACTTCCTTTTCTCCCTCAAGTTCCTTGAGTTT
>1.5|544479|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
AAACTGGGGGAGGGTGCTACAGATGAAGACAATCA
>1.6|544544|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
GAAGTAGAGATAAATCTATATCCGCTAAAGAAATCGC
>1.7|544611|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TGGTAAATTCGGACAACAAAATGAATATCGGGAAAT
>1.8|544677|38|NC_010483|PILER-CR,CRISPRCasFinder,CRT
GTTTCTGTGAATGTTACATAAATGTATTGCGTTTCGCT
>1.9|544745|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CAATTTATTGTGCCCTTTAGTTGTCCTCTCCACTCT
>1.10|544811|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
ACAACAGCGAAGTCGTCGTCGACCGTCATCACTAT
>1.11|544876|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CATTTTTGAAGTATTCCTCATCATCAGAGTTTTCG
>1.12|544941|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
GCGACCTCAAAAAGCAGGGTCTGGTAGAACCTTCG
>1.13|545006|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
ACAGGACCAGGCCCTGTGTAACCACCTTCCTGTTTGC
>1.14|545073|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
AACCGGCGGGCGACATGGATAAAAATGAACGGAAAC
>1.15|545139|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
GAGATCCAACAAAATATCTACCACTTGCTTGGGACC

CRISPR arrays and Neighbor proteins around NC_010483_1

CRISPR arrays

The CRISPR arrays of NC_010483_1

>merge|NC_010483|1|544183-545204|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAACTTTCTTATATGATGTATGACCAGTCCAACTTGTTTTCATGTTTCAATAGTTCCTTAGAGGTATGGAAACCCGATATTGAAAAAGAGCTCGAATAATGGAAAAATGGTTTCAATAGTTCCTTAGAGGTATGGAAACTATATTTTGCCGTGTCAGGATATCCGATGTATGATTGTTTCAATAGTTCCTTAGAGGTATGGAAACAGCACTTCCTTTTCTCCCTCAAGTTCCTTGAGTTTGTTTCAATAGTTCCTTAGAGGTATGGAAACAAACTGGGGGAGGGTGCTACAGATGAAGACAATCAGTTTCAATAGTTCCTTAGAGGTATGGAAACGAAGTAGAGATAAATCTATATCCGCTAAAGAAATCGCGTTTCAATAGTTCCTTAGAGGTATGGAAACTGGTAAATTCGGACAACAAAATGAATATCGGGAAATGTTTCAATACTTCCTTAGAGGTATGGAAACGTTTCTGTGAATGTTACATAAATGTATTGCGTTTCGCTGTTTCAATACTTCCTTAGAGGTATGGAAACCAATTTATTGTGCCCTTTAGTTGTCCTCTCCACTCTGTTTCAATACTTCCTTAGAGGTATGGAAACACAACAGCGAAGTCGTCGTCGACCGTCATCACTATGTTTCAATACTTCCTTAGAGGTATGGAAACCATTTTTGAAGTATTCCTCATCATCAGAGTTTTCGGTTTCAATACTTCCTTAGAGGTATGGAAACGCGACCTCAAAAAGCAGGGTCTGGTAGAACCTTCGGTTTCAATACTTCCTTAGAGGTATGGAAACACAGGACCAGGCCCTGTGTAACCACCTTCCTGTTTGCGTTTCAATACTTCCTTAGAGGTATGGAAACAACCGGCGGGCGACATGGATAAAAATGAACGGAAACGTTTCAATACTTCCTTAGAGGTATGGAAACGAGATCCAACAAAATATCTACCACTTGCTTGGGACCGTTTCAATACTTCCTTAGAGGTATGGAACC

>NC_010483|1|1|544183-545204|PILER-CR
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTTCTTATATGATGTATGACCAGTCCAACTTGTTTTCAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CCGATATTGAAAAAGAGCTCGAATAATGGAAAAATG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TATATTTTGCCGTGTCAGGATATCCGATGTATGATT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGCACTTCCTTTTCTCCCTCAAGTTCCTTGAGTTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AAACTGGGGGAGGGTGCTACAGATGAAGACAATCA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GAAGTAGAGATAAATCTATATCCGCTAAAGAAATCGC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGGTAAATTCGGACAACAAAATGAATATCGGGAAAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTTTCTGTGAATGTTACATAAATGTATTGCGTTTCGCT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CAATTTATTGTGCCCTTTAGTTGTCCTCTCCACTCT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAACAGCGAAGTCGTCGTCGACCGTCATCACTAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CATTTTTGAAGTATTCCTCATCATCAGAGTTTTCG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GCGACCTCAAAAAGCAGGGTCTGGTAGAACCTTCG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAGGACCAGGCCCTGTGTAACCACCTTCCTGTTTGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AACCGGCGGGCGACATGGATAAAAATGAACGGAAAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GAGATCCAACAAAATATCTACCACTTGCTTGGGACC
GTTTCAATACTTCCTTAGAGGTATGGAACC

>NC_010483|1|1|544183-545204|CRISPRCasFinder
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTTCTTATATGATGTATGACCAGTCCAACTTGTTTTCAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CCGATATTGAAAAAGAGCTCGAATAATGGAAAAATG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TATATTTTGCCGTGTCAGGATATCCGATGTATGATT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGCACTTCCTTTTCTCCCTCAAGTTCCTTGAGTTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AAACTGGGGGAGGGTGCTACAGATGAAGACAATCA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GAAGTAGAGATAAATCTATATCCGCTAAAGAAATCGC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGGTAAATTCGGACAACAAAATGAATATCGGGAAAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTTTCTGTGAATGTTACATAAATGTATTGCGTTTCGCT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CAATTTATTGTGCCCTTTAGTTGTCCTCTCCACTCT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAACAGCGAAGTCGTCGTCGACCGTCATCACTAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CATTTTTGAAGTATTCCTCATCATCAGAGTTTTCG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GCGACCTCAAAAAGCAGGGTCTGGTAGAACCTTCG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAGGACCAGGCCCTGTGTAACCACCTTCCTGTTTGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AACCGGCGGGCGACATGGATAAAAATGAACGGAAAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GAGATCCAACAAAATATCTACCACTTGCTTGGGACC
GTTTCAATACTTCCTTAGAGGTATGGAACC

>NC_010483|1|1|544183-545204|CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTTCTTATATGATGTATGACCAGTCCAACTTGTTTTCAT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CCGATATTGAAAAAGAGCTCGAATAATGGAAAAATG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TATATTTTGCCGTGTCAGGATATCCGATGTATGATT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AGCACTTCCTTTTCTCCCTCAAGTTCCTTGAGTTT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	AAACTGGGGGAGGGTGCTACAGATGAAGACAATCA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	GAAGTAGAGATAAATCTATATCCGCTAAAGAAATCGC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGGTAAATTCGGACAACAAAATGAATATCGGGAAAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GTTTCTGTGAATGTTACATAAATGTATTGCGTTTCGCT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CAATTTATTGTGCCCTTTAGTTGTCCTCTCCACTCT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAACAGCGAAGTCGTCGTCGACCGTCATCACTAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CATTTTTGAAGTATTCCTCATCATCAGAGTTTTCG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GCGACCTCAAAAAGCAGGGTCTGGTAGAACCTTCG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACAGGACCAGGCCCTGTGTAACCACCTTCCTGTTTGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AACCGGCGGGCGACATGGATAAAAATGAACGGAAAC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GAGATCCAACAAAATATCTACCACTTGCTTGGGACC
GTTTCAATACTTCCTTAGAGGTATGGAACC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010483.1|WP_012310614.1|550765_551317_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl|CDD|274317
NC_010483.1|WP_004083229.1|537184_538708_+|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|223147
NC_010483.1|WP_012310606.1|541185_542301_-|ROK-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224851
NC_010483.1|WP_008191950.1|540421_541159_+|hypothetical-protein	unknown	unknown	gnl|CDD|238481
NC_010483.1|WP_012310610.1|547742_548078_+|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl|CDD|223672
NC_010483.1|WP_011943153.1|539156_540434_+|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|224171
NC_010483.1|WP_004083227.1|538704_539160_+|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319885
NC_010483.1|WP_012310607.1|542305_543526_-|glycosyltransferase	unknown	unknown	gnl|CDD|340823
NC_010483.1|WP_012310611.1|548123_549473_+|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl|CDD|273568
NC_010483.1|WP_012310609.1|546386_547718_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|163244
NC_010483.1|WP_012310608.1|545313_546279_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223318
NC_010483.1|WP_012310605.1|536058_537177_+|glutamine-amidotransferase-family-protein	unknown	unknown	gnl|CDD|238888
NC_010483.1|WP_012310602.1|533244_533799_+|thymidine-kinase	unknown	unknown	gnl|CDD|224352
NC_010483.1|WP_012310615.1|551282_553238_+|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl|CDD|181342
NC_010483.1|WP_012310613.1|550139_550640_+|nitroreductase-family-protein	unknown	unknown	gnl|CDD|380325
NC_010483.1|WP_004083210.1|554281_555292_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|223912
NC_010483.1|WP_012310612.1|549449_550112_-|endonuclease-III-domain-containing-protein	unknown	unknown	gnl|CDD|225140
NC_010483.1|WP_083758354.1|534980_535658_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NC_010483.1|WP_012310603.1|533782_535000_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NC_010483.1|WP_004083209.1|553319_554285_+|nitroreductase-family-protein	unknown	unknown	gnl|CDD|380315

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010483.1|WP_012310614.1|550765_551317_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl|CDD|274317	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of radical SAM enzymes related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	5.75532e-66
NC_010483.1|WP_004083229.1|537184_538708_+|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|223147	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism].	0
NC_010483.1|WP_012310606.1|541185_542301_-|ROK-family-transcriptional-regulator	gnl|CDD|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.90696e-41
NC_010483.1|WP_008191950.1|540421_541159_+|hypothetical-protein	gnl|CDD|238481	cd00981, arch_gltB, Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.	4.04526e-126
NC_010483.1|WP_012310610.1|547742_548078_+|carboxymuconolactone-decarboxylase-family-protein	gnl|CDD|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	1.4033e-18
NC_010483.1|WP_011943153.1|539156_540434_+|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	4.0902e-84
NC_010483.1|WP_004083227.1|538704_539160_+|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319885	cd10563, CooF_like, CooF, iron-sulfur subunit of carbon monoxide dehydrogenase. This family includes CooF, the iron-sulfur subunit of carbon monoxide dehydrogenase (CODH), found in anaerobic bacteria and archaea. Carbon monoxide dehydrogenase is a key enzyme for carbon monoxide (CO) metabolism, where CooF is the proposed mediator of electron transfer between CODH and the CO-induced hydrogenase, catalyzing the reaction that uses CO as a single carbon and energy source, and producing only H2 and CO2. The ion-sulfur subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons in the protein complex during reaction.	1.75166e-65
NC_010483.1|WP_012310607.1|542305_543526_-|glycosyltransferase	gnl|CDD|340823	cd03792, GT4_trehalose_phosphorylase, trehalose phosphorylase and similar proteins. Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT4 family of glycosyltransferases.	0
NC_010483.1|WP_012310611.1|548123_549473_+|dihydrolipoyl-dehydrogenase	gnl|CDD|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
NC_010483.1|WP_012310609.1|546386_547718_+|FAD-dependent-oxidoreductase	gnl|CDD|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	4.72021e-78
NC_010483.1|WP_012310608.1|545313_546279_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl|CDD|223318	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	5.32018e-157
NC_010483.1|WP_012310605.1|536058_537177_+|glutamine-amidotransferase-family-protein	gnl|CDD|238888	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	9.06245e-111
NC_010483.1|WP_012310602.1|533244_533799_+|thymidine-kinase	gnl|CDD|224352	COG1435, Tdk, Thymidine kinase [Nucleotide transport and metabolism].	9.31722e-80
NC_010483.1|WP_012310615.1|551282_553238_+|anaerobic-ribonucleoside-triphosphate-reductase	gnl|CDD|181342	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NC_010483.1|WP_012310613.1|550139_550640_+|nitroreductase-family-protein	gnl|CDD|380325	cd02150, nitroreductase, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers.	5.37923e-96
NC_010483.1|WP_004083210.1|554281_555292_-|ABC-transporter-permease	gnl|CDD|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.74909e-16
NC_010483.1|WP_012310612.1|549449_550112_-|endonuclease-III-domain-containing-protein	gnl|CDD|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	1.00614e-92
NC_010483.1|WP_083758354.1|534980_535658_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.82681e-85
NC_010483.1|WP_012310603.1|533782_535000_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.93718e-52
NC_010483.1|WP_004083209.1|553319_554285_+|nitroreductase-family-protein	gnl|CDD|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	4.86618e-81

Protein sequences

>NC_010483.1|WP_012310607.1|542305_543526_-|glycosyltransferase
MDVVLRERNIEEYRTIIGNEVDEIKKLAEPLKGKKVLHVNATAYGGGVAEILHNLVPLMRSVGLDARWRVIEAPDEFFNVTKKFHNTLQGADIEISEEEWNLYEEVCRKNAELIQDEELFVIHDPQPAALRKFVDLNDRKWIWRCHIDLSTPNMKVWQRFSQYLEGYDRLVFHLEEYFPQGWKERSIAFPPSIDPLSEKNRDLDEDTIRKTLERLEIDPERPLITVVSRFDPWKDLFSAIDVYRLVKKEIPEVQLAVVSAMATDDPEGWFFFEKVLRYAGTDEDIKFCTNLKGVGNKEVNAIQRATTVALHTATREGFGLVISEALYKRVPVVARPVGGVKIQVKHGENGYLAWEREDLAGYVVKLIKDEELRRKMGEKGRQTVVENFIITVHLKNYLKLFLDLLR
>NC_010483.1|WP_012310606.1|541185_542301_-|ROK-family-transcriptional-regulator
MPSPLLRRENKIKILRYILRNGKTTRNQLASNLNLAHSTLSYIIDELLDEGFLVFEEIRKRRGRPYQILKVNPEKFTAIGVKVGREEVRGVLFDASMNPLKEHRVQILSGMRNNDGYTRALRETIEQLHSENLLGVGICSSGIVKEGKVIVSHVMNVKDWDPRKVLKDLERILVMNDSDALCREISQRVNADFLLVSYGIGIGASLWKDKRIHHLEMGHMLASSEGKCYCGQTGCLEYHSSEYAVLKSCLGKEIDFEDFITSEEEKYRQTIEELREKARKDFDSVKVHYEKAFKTFSVVLGNVIMGSGVSRVFFAGEGVVNEEMIKILEEMVRARFNRDFVGEVQFQVANANWMLGAARAVVDKYLPYIVK
>NC_010483.1|WP_008191950.1|540421_541159_+|hypothetical-protein
MVRIDAKGLHYKKLNDLIWEAIENGEEEIVLDNVCGQRYIGAGIRKKVKIEINGVPGNDLGVFMDGPEIIVNGNAQDGVGNTMNAGKIVVHGHAGDIIGYAMRGGHIYIKRNAGYRVGIHMKAYKENYPVVVIGGFARDFLGEYMAGGLLIVLGLEKDEDGNIAGNYVGTGMHGGEIFLRGTVEEHKLGKEVKIFQPTEEDINRIKPYVEEFCRLFDYDSEEILNGEFIILKPYTHRPYGRLYAY
>NC_010483.1|WP_011943153.1|539156_540434_+|NAD(P)/FAD-dependent-oxidoreductase
MRYVIVGSGPAGLNAIEAIREVDKEGEILLITAEKYVGYSRPLITYLLGRKVTEEKMYYRTEDYLREMRVDIKPATRVEKVIPEEKTVVTDSGEEIRYDKLLIATGGKPFVPNIEGLTGKKGVFTFTTWEDEEKVEKYIEENDVKEAVVLGGGLIGLKTTEALMELGVKVTIVELADRILSVTFDRKASEIITEALKKEGCSVITNDTVVKVNGDDTVSSVVLKSGKEIPTKLLVIAIGVKPNVEFLKDSGIEINRGIVVNEKMETNVEGVYAAGDCTEFYDLIDGQRKTIAIWPVAVAQGRVAGYNMAGRNVRYPGGIPMNSVELAGIPTISVGHSNVEDDGYEILTFEEGNTYKKMVLKDNRLIGAILVNDIDRAGIYTGLILQKLDVSSFKDRLLDENFGLVYLPKEFRKKMLEGEIKIWLE
>NC_010483.1|WP_004083227.1|538704_539160_+|4Fe-4S-dicluster-domain-containing-protein
MIAVRRILIREEYCMGCKLCEINCVAAQVGTGNLIKVYRYVPELPEPNVIVEEHDYVTFALQCRNCDDPSCLKACMTGAMHRDPKTGAIRVNQEKCVGCWMCVMACPFGVIRRNTKEKKVASKCDLCADRGTPGCVEGCPNEALVLVEVRE
>NC_010483.1|WP_004083229.1|537184_538708_+|4Fe-4S-dicluster-domain-containing-protein
MAKRKVPPEFVVERDDYKCIRCLACVRVCSYGANFYDENANRVYTENTKCVGCHFCEAICPTEAITVRKNDFDIRPLAHWTPEHLIGIMKQAETGGVLLTSMGNDRPYFSYFDRIVLNASQVTNPSIDPLREPMEIRTYIGRKEEKLEIEEDEDGTVKLKTEIAPQLKLEVPVMFTAMSYGSISLNAILSLARAARTVGTFFNTGEGGLPKELREFKDNMIVQVASGRFGVSADYLNAGSAVEIKIGQGAKPGIGGHLPGEKVTEPISETRMIPVGTDALSPAPHHDIYSIEDLRQLIYAIKEATRYEKPVGVKIAAVHNVAPIAAGAVRAGADYIVIDGIRGGTGAAPKITRDHVGIPIEFAVAVVDQRLREEGIRHMASIVVAGGIRNSADVIKAIALGADAVYIGTAALISLGCHLCQTCYLGKCNWGIATQDPKLTKRLNPEIGARRAANLLRAWAHEIKEILGGMGINAIESLRGNREVLRGVGLHEYELKLLGIKPAGEAW
>NC_010483.1|WP_012310605.1|536058_537177_+|glutamine-amidotransferase-family-protein
MSYDLPRLIPDKDFKVPSACGVSGIMNTSGKRFSGNMIVESMALMRERGNGLGAGYAAYGIYPELKDLYCFHMLYDSDLDKKNAEEYIKDHYEIIESEPIPTRKNPHIKEVHILWRYFLKPKFIPEDMSEEDFVVSTVMFINEKINGAFVMSSGKNMGVFKGVGFPEDIADFYRIDEYKGYIWTAHNRFPTNTVGWWGGAHPFGILDWTVVHNGEISSYGINRRFLEAYGYKCTLMTDTEVVAYLVDLFMRRFGYSPQLTAKILAAPLWKDIDLMPEEERKLYTALRMNYGGALLNGPFAIIVANNNMMMGLNDRIKLRPLVAATKDDFLYIASEESAIRVVCPEPDEVWAPKAGDPVVGVLKSARKTQVVL
>NC_010483.1|WP_083758354.1|534980_535658_-|response-regulator-transcription-factor
MNVRVLVVEDERDLADLIAEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLSVHDGWEILKSMRENGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGGKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKKKIIHTVRGIGYVARDE
>NC_010483.1|WP_012310603.1|533782_535000_-|HAMP-domain-containing-histidine-kinase
MLPVTNEKKAFRKTQLIWTAVFTLSIVLIVAITVGAVFIVEKRRITTQFDGELRRTADLIERRLKAPGMMGMLRTFRGVDPLFVPRGEAFQFLLPSGEVFLEVGEQIGTPETPVEEGFSTEGNYRIFTKKIDLGDTTIFLRVGKDISDLIERSRRLLSMYLLVILFSAGGAAVFGYFVSSLALLPVRNAYNSLKRFSMDASHELKTPLSVLRTSLDVLKYREDLPDDVKNKLGIMEKNVEKMSKQINQLLLLVKSESSFNGVVKERINLKEFLQQIVNEFKPKAESKGLVLEIDCPEDLFLETEKDTLRVILENLIDNAVKFTEKGKVIVGARKEGRLTIYVQDTGPGIPKKEQKRIFERFYRISRNTEGSGLGLSIVKELASRLKAKVILESEEGKGSTFKLVF
>NC_010483.1|WP_012310602.1|533244_533799_+|thymidine-kinase
MSGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGVFIDEVQFFSPGLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYNTLKKRV
>NC_010483.1|WP_012310608.1|545313_546279_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MRFFVLGAGSWGTVFAQILHENGEEVVLWARRKEIVDLINVSHTSPYVEESKITVRATNDLEEIKKEDILVIAIPVQYIREHLLRLPVKPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAGENSKELQKRISTEYFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIARGFNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVYEGKPPLQSMRDLMRRSLKDEFWAS
>NC_010483.1|WP_012310609.1|546386_547718_+|FAD-dependent-oxidoreductase
MRYDVVVVGGGPAGLVAAFTTKRFFGDKKILVVKKTEKEMVPCGIPYIFHTLGSVENDYMGIEDRFKGAGIDLLIDEVVDGNPDEKKLFTKSGKEISYDKLIIATGSSPNTPKIPGVDLKGVFTVPKEADYLKLLHEKVKDANDVVIIGGGFIGVEVADEIKKSGKNVTLVEIMDSLLPVSFDPDFGELARKELESDNVKVLTGRKVTEILGTEKVEGVKLDSGETIPADVVVLATGYKPNSELARKLGLKVTELGFIETDEYMRTSKPDIFAAGDCVQHKDFLTGKPSRLMLASAAVFDARIAASNLYGLKVIRTNKGSLNAYSTVIGSKAFGSVGITERIAKEEGFEVVVGKAEAPDRHPGKFEDTSKLVVKLIFSEDSKILLGAQVCGGKSVGEIVNLISLGIQKGITANDLFTMQIGTHPLLTSAPTVYPLAKAAEMVL
>NC_010483.1|WP_012310610.1|547742_548078_+|carboxymuconolactone-decarboxylase-family-protein
MAAKEKLEQIQKQLQEIIGKAPEIGKFAEYVHMAESTKALDTKTKELISLGIAVAVRCEPCIVWHTGAAVKAGATEEEILDTIKVAVCMGGGPALMYGLKAYEIALEFLGK
>NC_010483.1|WP_012310611.1|548123_549473_+|dihydrolipoyl-dehydrogenase
MYDAVIIGGGPGGYVCAIKLVQLGKKVALVEKDALGGTCTNRGCIPTKAMLTVSHLMDEMKEKASKYGLKVSGVEYDVDTIMKHVQKSVMMSRKGIEYLLNKNGVEVFKGTAVVENKNTVVVQETGEKLEAKNLVLAHGSVPSVFSPFDIDGVWTSDDVFNLKEFPKSLVIIGGGVIGVEFATFFGSFGVDVTIVEIAEHILPYEDSDVAEEVKKALKRKGVKILEKTKVSSLNRVSDGFEVALENGETLKAEKVLLAAGRKPNIPEDVKALGVKIEKGVVTDSRMRTNVENVYAIGDIRSGIMLAHVAMYEGIVAAKNIAGEEEEMDYSAVPSIIFSSPEVASVGVREKDVNSEEVVISKFPVSANGRARTMLENIGFAKVIADKKDRTVLGMSIVSPSATDMIMEGVIAVKFRMKAEDLEKAIHPHPTLTETILGALEGVSGKPIHL
>NC_010483.1|WP_012310612.1|549449_550112_-|endonuclease-III-domain-containing-protein
MRLTELYRKLLEIHGSVGKWWPGTPEEIVITAILTQNTNWKNVERVMENIKNAVKGNNLLKELDSLPEEKVAELIKPAGFFNIKTKRLKALLKFLKEYNYNLSRLRDLPTHILRERLLKIKGIGKETADAILLYALEKPIFVVDSYTRRLLKRIFNIELNDYDEVQKLFMTHYPEDVRLYQEFHGLIVEHAKKFCNKTPKCGVCPLRKECYHVSQMNGFS
>NC_010483.1|WP_012310613.1|550139_550640_+|nitroreductase-family-protein
MSIIYRRRSIRKYQKKDVPDELVGEIIRAAMHAPSACNQQPWHFVVIRNEETKKKIAEIHPHAQMSAEAPVVILVCGDPTLEKCKGYWVQDCSAAVENLLLRATELGLGAVWCGVYPREERVKAFRELLGIPEHVVPFAIVPVGYPAEQPAQVDRFKPERIHYEKW
>NC_010483.1|WP_012310614.1|550765_551317_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MYVNRIGTFRDHPDLYGVSVYFQGCDAKPKCYMCHNPETWHLSEEYKRPAEVVTKIIDEKLSSLLRYFPKAALVFLGGEPLAPYNREETLSLSKMFKEKYGERLTVVLFTWRLPKDIVKENLLKYVQYVDEFVMGRYLHAYRQDGFPASKNQIHIDRRTFERMIEAVLRRGHYEGSVFVRKRI
>NC_010483.1|WP_012310615.1|551282_553238_+|anaerobic-ribonucleoside-triphosphate-reductase
MKVQYSFEREFEELMSDLLSKYGYEMFQMDGLGDQLDVVKFTEDFVRRGIIESTIDANANVRVTNISTYFIEISKPHTYLYSLYRIWQKMKEMFGKEVADEFVEAQINGAVYLHDRHHAALMPYCFAYTLQPIVEKGLPFIKTIKSEPAKHLSTFIQHVIQFVMFASNQSSGAVGLPDFFVWMWYFVKKDLEEGIIPRDKLDWYIEQHFQILTYSLNQPIRTTQSPYTNFTYLDRNYIKAIFEGERYPDGSLITDHVEDIIALQKHYWEWVSKERERQMFTFPVLTASLLYRDGKFLDEDSARFINKINMKWQDTNWYISDSIDAVASCCRLTSSTQTLKKFSLSSEEEEKLKGRMNSIGGSDLNIGSFKVITMNLPRIALESGGDREKYLQILRHRVQLIKKALAAVREIIKERISEGLLPLYENGLMLLNRQYGTIGVTGVWESASIMGLTTEDIDGLKYTEEGEVFVDNVLDTIREEAEKGYHEYGFTFNIEQVPAEKAAVTLAQKDRFLFGEKQPFEIYSNQWVPLMANTDVLNRIRYSGKWDKKVSGGAILHINLGESFKTEEESFNMVKMIADMGVMYFAFNTKISVCEDGHAFYGERCPVCGKAKVDEYMRIVGYLVPVSAFNKERREIEYPRRQFYDSLTIRR
>NC_010483.1|WP_004083209.1|553319_554285_+|nitroreductase-family-protein
MRVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGCTREAVEFSRENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHLAPSCMNNQPWRFVVVDEEELLKKIHEALPGGNYWMKNAPALIAVHSKKDFDCALPDNRDYFLFDTGLAVGNLLVQATQMGLVAHPVAGYDPVKVKEILKIPEDHVLITLIAVGYLGDESELSEKHRELERSERVRKELSEIVRWNL
>NC_010483.1|WP_004083210.1|554281_555292_-|ABC-transporter-permease
MSEFLALFSAMWKESWRDKISTFFSIAFPVMFLLIFGFLFGGSGNSVKTAVVTVDYDLSDFGDVYTSLEELKGYYHEVAVVEKERIIFIRNTTDEYYQSLLDSWEISLKNKVTRLLNGLNPVIMVKKEVLKTARELTSFDYTLTGVIAVSLLSIGLFGTVDVFSRYRERGFLKRLKATPVGNFSFVFGLISARMFYGILSTALIMLLGTLIFKASYELNVFLFLISVVSSVLSFIALGALISILFKKSDVATDAAVILFTIMMFLTGVYFPVSFLPDYLRVVSYFLPVKYGVELIRYSLGFEIFPFSRYLITAVIMFLAGLMFVFYTASLVLRKED

Crispr_ID: NC_010483_2

• CRISPR_ID: NC_010483_2
• CRISPR_location: 557367-559006
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 24 spacers

Consensus repeat of NC_010483_2

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAACTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAACTATTGAAAC	CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	PILER-CR

spacers of NC_010483_2

>2.1|557397|37|NC_010483|CRISPRCasFinder,CRT
TCGCAAAGAAATTCGAAACATTCGACGGAAAAATCGT
>2.2|557464|36|NC_010483|CRISPRCasFinder,CRT,PILER-CR
TGAAGGAATGGAGAAGCGTAACAATCTATTATAACG
>2.3|557530|39|NC_010483|CRISPRCasFinder,CRT,PILER-CR
GAAGCAGGAACTTTTGCAAGCTCTTAGCAGGGCATTCTA
>2.4|557599|38|NC_010483|CRISPRCasFinder,CRT,PILER-CR
GTGATCAAAAGGAGTTTGCAAGATGGCAGAGTAATTTT
>2.5|557667|38|NC_010483|CRISPRCasFinder,CRT,PILER-CR
TCGGGACTGTAAACGAGTGCTCCGGCGGAAATGCCCAA
>2.6|557735|38|NC_010483|CRISPRCasFinder,CRT,PILER-CR
AAAGTAATGAGCTGGGTCAAAATTGCCAAAGAAACATA
>2.7|557803|35|NC_010483|CRISPRCasFinder,CRT,PILER-CR
CCTCCCTCACAGCAAGTCTGCGAGTTCTAAAAGGT
>2.8|557868|38|NC_010483|CRISPRCasFinder,CRT,PILER-CR
CTTGTATGCATAGTAAGAATTCTTCAATCCTTTCTTTC
>2.9|557936|36|NC_010483|CRISPRCasFinder,CRT,PILER-CR
ATGCGACCTTTATAAGAAACTCGACTGGTTTTTCGA
>2.10|558002|36|NC_010483|CRISPRCasFinder,CRT,PILER-CR
TCCTGAAAACAAGGAACAACAGTAGCACGAAAAGTG
>2.11|558068|37|NC_010483|CRISPRCasFinder,CRT,PILER-CR
TTAAACGTGCAAACAGATTGATGAAGGGAAAGTCGGC
>2.12|558135|36|NC_010483|CRISPRCasFinder,CRT,PILER-CR
CAAGCATGAATGGACACTTGCACCACAGCCAGGCTT
>2.13|558201|38|NC_010483|CRISPRCasFinder,CRT,PILER-CR
GATCCACGTCCTTGGGGAAGAAGGATACATATCCCCCA
>2.14|558269|40|NC_010483|CRISPRCasFinder,CRT,PILER-CR
GAGAAGAACAAAAAGGAGAAGATCAAGAAGAAAAAGAAGG
>2.15|558339|39|NC_010483|CRISPRCasFinder,CRT,PILER-CR
AGGGAAACCCGTTCATCGAATTCCCTCTGCACGCACAAA
>2.16|558408|36|NC_010483|CRISPRCasFinder,CRT,PILER-CR
CTCCAGCATTAAGCAACTTGCTGACGAAATCACCTT
>2.17|558474|37|NC_010483|CRISPRCasFinder,CRT,PILER-CR
GGTTTAAAACGAACGATGGCTGGATAGCTGTAGAGTT
>2.18|558541|35|NC_010483|CRISPRCasFinder,CRT,PILER-CR
CGTGTCCTGGTACTGGCTTATCGACACAGACGAAG
>2.19|558606|39|NC_010483|CRISPRCasFinder,CRT,PILER-CR
GCAAGCGATTTTCTGCGTCACCAAAGCACGTGGGGATTG
>2.20|558675|36|NC_010483|CRISPRCasFinder,CRT,PILER-CR
AGTTTGACCTTTCACAAGAGAGAAGGGATTATGAAG
>2.21|558741|35|NC_010483|CRISPRCasFinder,CRT,PILER-CR
GTGCTCCCTTACTCTTTCATATCCACTACAAACAT
>2.22|558806|35|NC_010483|CRISPRCasFinder,CRT,PILER-CR
GTGCTCCCTTACTCTTTCATATCCACTACAAACAT
>2.23|558871|38|NC_010483|CRISPRCasFinder,CRT,PILER-CR
GCTGGCACCATCTTCCGAACTCAAATACCGTCGCCAGG
>2.24|558939|38|NC_010483|CRISPRCasFinder,CRT,PILER-CR
TAAGCTCGCCTCCTTTTTTAAATTAAATCGTCCAGATT

CRISPR arrays and Neighbor proteins around NC_010483_2

CRISPR arrays

The CRISPR arrays of NC_010483_2

>merge|NC_010483|2|557367-559006|CRISPRCasFinder,CRT,PILER-CR
GTTTCCGTACCTCTAAGGAAGTATTGAAACTCGCAAAGAAATTCGAAACATTCGACGGAAAAATCGTGTTTCCATACCTCTAAGGAACTATTGAAACTGAAGGAATGGAGAAGCGTAACAATCTATTATAACGGTTTCCATACCTCTAAGGAACTATTGAAACGAAGCAGGAACTTTTGCAAGCTCTTAGCAGGGCATTCTAGTTTCCATACCTCTAAGGAACTATTGAAACGTGATCAAAAGGAGTTTGCAAGATGGCAGAGTAATTTTGTTTCCATACCTCTAAGGAACTATTGAAACTCGGGACTGTAAACGAGTGCTCCGGCGGAAATGCCCAAGTTTCCATACCTCTAAGGAACTATTGAAACAAAGTAATGAGCTGGGTCAAAATTGCCAAAGAAACATAGTTTCCATACCTCTAAGGAACTATTGAAACCCTCCCTCACAGCAAGTCTGCGAGTTCTAAAAGGTGTTTCCATACCTCTAAGGAACTATTGAAACCTTGTATGCATAGTAAGAATTCTTCAATCCTTTCTTTCGTTTCCATACCTCTAAGGAACTATTGAAACATGCGACCTTTATAAGAAACTCGACTGGTTTTTCGAGTTTCCATACCTCTAAGGAACTATTGAAACTCCTGAAAACAAGGAACAACAGTAGCACGAAAAGTGGTTTCCATACCTCTAAGGAACTATTGAAACTTAAACGTGCAAACAGATTGATGAAGGGAAAGTCGGCGTTTCCATACCTCTAAGGAACTATTGAAACCAAGCATGAATGGACACTTGCACCACAGCCAGGCTTGTTTCCATACCTCTAAGGAACTATTGAAACGATCCACGTCCTTGGGGAAGAAGGATACATATCCCCCAGTTTCCATACCTCTAAGGAACTATTGAAACGAGAAGAACAAAAAGGAGAAGATCAAGAAGAAAAAGAAGGGTTTCCATACCTCTAAGGAACTATTGAAACAGGGAAACCCGTTCATCGAATTCCCTCTGCACGCACAAAGTTTCCATACCTCTAAGGAACTATTGAAACCTCCAGCATTAAGCAACTTGCTGACGAAATCACCTTGTTTCCATACCTCTAAGGAACTATTGAAACGGTTTAAAACGAACGATGGCTGGATAGCTGTAGAGTTGTTTCCATACCTCTAAGGAACTATTGAAACCGTGTCCTGGTACTGGCTTATCGACACAGACGAAGGTTTCCATACCTCTAAGGAACTATTGAAACGCAAGCGATTTTCTGCGTCACCAAAGCACGTGGGGATTGGTTTCCATACCTCTAAGGAACTATTGAAACAGTTTGACCTTTCACAAGAGAGAAGGGATTATGAAGGTTTCCATACCTCTAAGGAACTATTGAAACGTGCTCCCTTACTCTTTCATATCCACTACAAACATGTTTCCATACCTCTAAGGAACTATTGAAACGTGCTCCCTTACTCTTTCATATCCACTACAAACATGTTTCCATACCTCTAAGGAACTATTGAAACGCTGGCACCATCTTCCGAACTCAAATACCGTCGCCAGGGTTTCCATACCTCTAAGGAACTATTGAAACTAAGCTCGCCTCCTTTTTTAAATTAAATCGTCCAGATTGTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_010483|2|2|557367-559006|CRISPRCasFinder
GTTTCCGTACCTCTAAGGAAGTATTGAAAC	TCGCAAAGAAATTCGAAACATTCGACGGAAAAATCGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TGAAGGAATGGAGAAGCGTAACAATCTATTATAACG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GAAGCAGGAACTTTTGCAAGCTCTTAGCAGGGCATTCTA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGATCAAAAGGAGTTTGCAAGATGGCAGAGTAATTTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TCGGGACTGTAAACGAGTGCTCCGGCGGAAATGCCCAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAAGTAATGAGCTGGGTCAAAATTGCCAAAGAAACATA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CCTCCCTCACAGCAAGTCTGCGAGTTCTAAAAGGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTTGTATGCATAGTAAGAATTCTTCAATCCTTTCTTTC
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATGCGACCTTTATAAGAAACTCGACTGGTTTTTCGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TCCTGAAAACAAGGAACAACAGTAGCACGAAAAGTG
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTAAACGTGCAAACAGATTGATGAAGGGAAAGTCGGC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CAAGCATGAATGGACACTTGCACCACAGCCAGGCTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GATCCACGTCCTTGGGGAAGAAGGATACATATCCCCCA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GAGAAGAACAAAAAGGAGAAGATCAAGAAGAAAAAGAAGG
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGGGAAACCCGTTCATCGAATTCCCTCTGCACGCACAAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTCCAGCATTAAGCAACTTGCTGACGAAATCACCTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GGTTTAAAACGAACGATGGCTGGATAGCTGTAGAGTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CGTGTCCTGGTACTGGCTTATCGACACAGACGAAG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCAAGCGATTTTCTGCGTCACCAAAGCACGTGGGGATTG
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGTTTGACCTTTCACAAGAGAGAAGGGATTATGAAG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGCTCCCTTACTCTTTCATATCCACTACAAACAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGCTCCCTTACTCTTTCATATCCACTACAAACAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCTGGCACCATCTTCCGAACTCAAATACCGTCGCCAGG
GTTTCCATACCTCTAAGGAACTATTGAAAC	TAAGCTCGCCTCCTTTTTTAAATTAAATCGTCCAGATT
GTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_010483|2|2|557367-559006|CRT
GTTTCCGTACCTCTAAGGAAGTATTGAAAC	TCGCAAAGAAATTCGAAACATTCGACGGAAAAATCGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TGAAGGAATGGAGAAGCGTAACAATCTATTATAACG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GAAGCAGGAACTTTTGCAAGCTCTTAGCAGGGCATTCTA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGATCAAAAGGAGTTTGCAAGATGGCAGAGTAATTTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TCGGGACTGTAAACGAGTGCTCCGGCGGAAATGCCCAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAAGTAATGAGCTGGGTCAAAATTGCCAAAGAAACATA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CCTCCCTCACAGCAAGTCTGCGAGTTCTAAAAGGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTTGTATGCATAGTAAGAATTCTTCAATCCTTTCTTTC
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATGCGACCTTTATAAGAAACTCGACTGGTTTTTCGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TCCTGAAAACAAGGAACAACAGTAGCACGAAAAGTG
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTAAACGTGCAAACAGATTGATGAAGGGAAAGTCGGC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CAAGCATGAATGGACACTTGCACCACAGCCAGGCTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GATCCACGTCCTTGGGGAAGAAGGATACATATCCCCCA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GAGAAGAACAAAAAGGAGAAGATCAAGAAGAAAAAGAAGG
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGGGAAACCCGTTCATCGAATTCCCTCTGCACGCACAAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTCCAGCATTAAGCAACTTGCTGACGAAATCACCTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GGTTTAAAACGAACGATGGCTGGATAGCTGTAGAGTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CGTGTCCTGGTACTGGCTTATCGACACAGACGAAG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCAAGCGATTTTCTGCGTCACCAAAGCACGTGGGGATTG
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGTTTGACCTTTCACAAGAGAGAAGGGATTATGAAG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGCTCCCTTACTCTTTCATATCCACTACAAACAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGCTCCCTTACTCTTTCATATCCACTACAAACAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCTGGCACCATCTTCCGAACTCAAATACCGTCGCCAGG
GTTTCCATACCTCTAAGGAACTATTGAAAC	TAAGCTCGCCTCCTTTTTTAAATTAAATCGTCCAGATT
GTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_010483|2|2|557434-559006|PILER-CR
GTTTCCATACCTCTAAGGAACTATTGAAAC	TGAAGGAATGGAGAAGCGTAACAATCTATTATAACG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GAAGCAGGAACTTTTGCAAGCTCTTAGCAGGGCATTCTA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGATCAAAAGGAGTTTGCAAGATGGCAGAGTAATTTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	TCGGGACTGTAAACGAGTGCTCCGGCGGAAATGCCCAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	AAAGTAATGAGCTGGGTCAAAATTGCCAAAGAAACATA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CCTCCCTCACAGCAAGTCTGCGAGTTCTAAAAGGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTTGTATGCATAGTAAGAATTCTTCAATCCTTTCTTTC
GTTTCCATACCTCTAAGGAACTATTGAAAC	ATGCGACCTTTATAAGAAACTCGACTGGTTTTTCGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TCCTGAAAACAAGGAACAACAGTAGCACGAAAAGTG
GTTTCCATACCTCTAAGGAACTATTGAAAC	TTAAACGTGCAAACAGATTGATGAAGGGAAAGTCGGC
GTTTCCATACCTCTAAGGAACTATTGAAAC	CAAGCATGAATGGACACTTGCACCACAGCCAGGCTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GATCCACGTCCTTGGGGAAGAAGGATACATATCCCCCA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GAGAAGAACAAAAAGGAGAAGATCAAGAAGAAAAAGAAGG
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGGGAAACCCGTTCATCGAATTCCCTCTGCACGCACAAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	CTCCAGCATTAAGCAACTTGCTGACGAAATCACCTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GGTTTAAAACGAACGATGGCTGGATAGCTGTAGAGTT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CGTGTCCTGGTACTGGCTTATCGACACAGACGAAG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCAAGCGATTTTCTGCGTCACCAAAGCACGTGGGGATTG
GTTTCCATACCTCTAAGGAACTATTGAAAC	AGTTTGACCTTTCACAAGAGAGAAGGGATTATGAAG
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGCTCCCTTACTCTTTCATATCCACTACAAACAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTGCTCCCTTACTCTTTCATATCCACTACAAACAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GCTGGCACCATCTTCCGAACTCAAATACCGTCGCCAGG
GTTTCCATACCTCTAAGGAACTATTGAAAC	TAAGCTCGCCTCCTTTTTTAAATTAAATCGTCCAGATT
GTTTCCATACCTCTAAGGAACTATTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010483.1|WP_010865109.1|556366_557272_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224054
NC_010483.1|WP_012310614.1|550765_551317_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	unknown	unknown	gnl|CDD|274317
NC_010483.1|WP_011943172.1|568336_569446_-|MFS-transporter	unknown	unknown	gnl|CDD|340883
NC_010483.1|WP_011943170.1|567158_567887_+|KaiC-domain-containing-protein	unknown	unknown	gnl|CDD|235281
NC_010483.1|WP_012310610.1|547742_548078_+|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl|CDD|223672
NC_010483.1|WP_004083192.1|559632_560358_+|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl|CDD|376667
NC_010483.1|WP_012310615.1|551282_553238_+|anaerobic-ribonucleoside-triphosphate-reductase	unknown	unknown	gnl|CDD|181342
NC_010483.1|WP_012310612.1|549449_550112_-|endonuclease-III-domain-containing-protein	unknown	unknown	gnl|CDD|225140
NC_010483.1|WP_004083187.1|561512_563303_-|molecular-chaperone-DnaK	unknown	unknown	gnl|CDD|234715
NC_010483.1|WP_004083188.1|561053_561497_-|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl|CDD|223149
NC_010483.1|WP_012310611.1|548123_549473_+|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl|CDD|273568
NC_010483.1|WP_012310617.1|563536_566539_+|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl|CDD|223911
NC_010483.1|WP_012310616.1|555284_556370_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|223912
NC_010483.1|WP_004083185.1|566528_566987_-|arginine-repressor	unknown	unknown	gnl|CDD|130592
NC_010483.1|WP_012310613.1|550139_550640_+|nitroreductase-family-protein	unknown	unknown	gnl|CDD|380325
NC_010483.1|WP_004083210.1|554281_555292_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|223912
NC_010483.1|WP_012310619.1|569585_571568_-|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl|CDD|223910
NC_010483.1|WP_012310618.1|567883_568327_+|transcriptional-regulator	unknown	unknown	gnl|CDD|224237
NC_010483.1|WP_008193527.1|560436_561024_+|phosphate-propanoyltransferase	unknown	unknown	gnl|CDD|237899
NC_010483.1|WP_004083209.1|553319_554285_+|nitroreductase-family-protein	unknown	unknown	gnl|CDD|380315

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010483.1|WP_010865109.1|556366_557272_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.16546e-99
NC_010483.1|WP_012310614.1|550765_551317_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein	gnl|CDD|274317	TIGR02826, hypothetical_protein, anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of radical SAM enzymes related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	5.75532e-66
NC_010483.1|WP_011943172.1|568336_569446_-|MFS-transporter	gnl|CDD|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.88254e-38
NC_010483.1|WP_011943170.1|567158_567887_+|KaiC-domain-containing-protein	gnl|CDD|235281	PRK04328, PRK04328, hypothetical protein; Provisional.	1.51705e-172
NC_010483.1|WP_012310610.1|547742_548078_+|carboxymuconolactone-decarboxylase-family-protein	gnl|CDD|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	1.4033e-18
NC_010483.1|WP_004083192.1|559632_560358_+|sulfite-exporter-TauE/SafE-family-protein	gnl|CDD|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	7.20423e-25
NC_010483.1|WP_012310615.1|551282_553238_+|anaerobic-ribonucleoside-triphosphate-reductase	gnl|CDD|181342	PRK08271, PRK08271, anaerobic ribonucleoside triphosphate reductase; Provisional.	0
NC_010483.1|WP_012310612.1|549449_550112_-|endonuclease-III-domain-containing-protein	gnl|CDD|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	1.00614e-92
NC_010483.1|WP_004083187.1|561512_563303_-|molecular-chaperone-DnaK	gnl|CDD|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NC_010483.1|WP_004083188.1|561053_561497_-|Hsp20/alpha-crystallin-family-protein	gnl|CDD|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	7.33553e-35
NC_010483.1|WP_012310611.1|548123_549473_+|dihydrolipoyl-dehydrogenase	gnl|CDD|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
NC_010483.1|WP_012310617.1|563536_566539_+|efflux-RND-transporter-permease-subunit	gnl|CDD|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_010483.1|WP_012310616.1|555284_556370_-|ABC-transporter-permease	gnl|CDD|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	2.5633e-15
NC_010483.1|WP_004083185.1|566528_566987_-|arginine-repressor	gnl|CDD|130592	TIGR01529, Arginine_repressor., arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs. [Amino acid biosynthesis, Glutamate family, Regulatory functions, DNA interactions].	1.02883e-68
NC_010483.1|WP_012310613.1|550139_550640_+|nitroreductase-family-protein	gnl|CDD|380325	cd02150, nitroreductase, nitroreductase family protein. A subfamily of the nitroreductase family containing uncharacterized proteins. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.often found to be homodimers.	5.37923e-96
NC_010483.1|WP_004083210.1|554281_555292_-|ABC-transporter-permease	gnl|CDD|223912	COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms].	1.74909e-16
NC_010483.1|WP_012310619.1|569585_571568_-|methyl-accepting-chemotaxis-protein	gnl|CDD|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.41791e-68
NC_010483.1|WP_012310618.1|567883_568327_+|transcriptional-regulator	gnl|CDD|224237	COG1318, COG1318, Predicted transcriptional regulators [Transcription].	3.53308e-38
NC_010483.1|WP_008193527.1|560436_561024_+|phosphate-propanoyltransferase	gnl|CDD|237899	PRK15070, PRK15070, phosphate propanoyltransferase.	5.00867e-130
NC_010483.1|WP_004083209.1|553319_554285_+|nitroreductase-family-protein	gnl|CDD|380315	cd02138, TdsD-like, nitroreductase similar to Burkholderia pseudomallei TdsD. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to Burkholderia pseudomallei TdsD, may be involved in the processing of organosulfur compounds. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	4.86618e-81

Protein sequences

>NC_010483.1|WP_010865109.1|556366_557272_-|ABC-transporter-ATP-binding-protein
MVVLHSKGGFFLEILKVVDLKKHYGDVKAVDGISFTVERGTVFSFLGPNGAGKTTTVEILEGLRKKDSGEIYYFGERKDVLDRETKRKIGVCLQKSAFFENLTVWETLKLFRGLYGTGLDLKEVMGLFSLENIEKKMVKTLSGGQLQRLAVAVAFINDPEIVFLDEPTTGLDPQARRQIWDTIEHFKNLGKTIFLTTHYMEEAERLSDHVCIIDHGKIIAEGTPSSLISSSGLKTVVEFDCDQDVNVRYLEKKENHYVVETDAPEELIKDLLKNWNVSNIVIRKPNLEDVFLKLTGRDLRE
>NC_010483.1|WP_012310616.1|555284_556370_-|ABC-transporter-permease
MRHLVVSILKNDYFRTKSVLFWNFLFPILLYLILVSIFGDMSSNMNLRIGLVGESSLVESVFSHLPSGIEIIRTQNPERDLKYGKIDVCVILPENLDNLFTKAIIFSKTKISVPVEITILYAPERQESIVLANVVSNILESLDLQLRKVKEVEVEYRKKERQAINYSHYILPAVLLVGVMSVGLFTVPYQLALYREQGILKRILASPLRGHHYFFSIVVCGLFAMSITSASVTLFARFVYGIEFPINVSFLGGVLLSFLTFLSVSLLMVSLFKTFSALSAASQVFNQVFMFLGGFYFDVSGIPWPIKAVVLGNPATYLVDYLRGSFGYRTIYSNHFLVPIVWIVLSLVLFFLNWRRVMMVE
>NC_010483.1|WP_004083210.1|554281_555292_-|ABC-transporter-permease
MSEFLALFSAMWKESWRDKISTFFSIAFPVMFLLIFGFLFGGSGNSVKTAVVTVDYDLSDFGDVYTSLEELKGYYHEVAVVEKERIIFIRNTTDEYYQSLLDSWEISLKNKVTRLLNGLNPVIMVKKEVLKTARELTSFDYTLTGVIAVSLLSIGLFGTVDVFSRYRERGFLKRLKATPVGNFSFVFGLISARMFYGILSTALIMLLGTLIFKASYELNVFLFLISVVSSVLSFIALGALISILFKKSDVATDAAVILFTIMMFLTGVYFPVSFLPDYLRVVSYFLPVKYGVELIRYSLGFEIFPFSRYLITAVIMFLAGLMFVFYTASLVLRKED
>NC_010483.1|WP_004083209.1|553319_554285_+|nitroreductase-family-protein
MRVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGCTREAVEFSRENFEKAQVVGISRDSVEALKRFKEKNDLKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHIEWRRARRALKKDRVPREELELLIKAAHLAPSCMNNQPWRFVVVDEEELLKKIHEALPGGNYWMKNAPALIAVHSKKDFDCALPDNRDYFLFDTGLAVGNLLVQATQMGLVAHPVAGYDPVKVKEILKIPEDHVLITLIAVGYLGDESELSEKHRELERSERVRKELSEIVRWNL
>NC_010483.1|WP_012310615.1|551282_553238_+|anaerobic-ribonucleoside-triphosphate-reductase
MKVQYSFEREFEELMSDLLSKYGYEMFQMDGLGDQLDVVKFTEDFVRRGIIESTIDANANVRVTNISTYFIEISKPHTYLYSLYRIWQKMKEMFGKEVADEFVEAQINGAVYLHDRHHAALMPYCFAYTLQPIVEKGLPFIKTIKSEPAKHLSTFIQHVIQFVMFASNQSSGAVGLPDFFVWMWYFVKKDLEEGIIPRDKLDWYIEQHFQILTYSLNQPIRTTQSPYTNFTYLDRNYIKAIFEGERYPDGSLITDHVEDIIALQKHYWEWVSKERERQMFTFPVLTASLLYRDGKFLDEDSARFINKINMKWQDTNWYISDSIDAVASCCRLTSSTQTLKKFSLSSEEEEKLKGRMNSIGGSDLNIGSFKVITMNLPRIALESGGDREKYLQILRHRVQLIKKALAAVREIIKERISEGLLPLYENGLMLLNRQYGTIGVTGVWESASIMGLTTEDIDGLKYTEEGEVFVDNVLDTIREEAEKGYHEYGFTFNIEQVPAEKAAVTLAQKDRFLFGEKQPFEIYSNQWVPLMANTDVLNRIRYSGKWDKKVSGGAILHINLGESFKTEEESFNMVKMIADMGVMYFAFNTKISVCEDGHAFYGERCPVCGKAKVDEYMRIVGYLVPVSAFNKERREIEYPRRQFYDSLTIRR
>NC_010483.1|WP_012310614.1|550765_551317_+|anaerobic-ribonucleoside-triphosphate-reductase-activating-protein
MYVNRIGTFRDHPDLYGVSVYFQGCDAKPKCYMCHNPETWHLSEEYKRPAEVVTKIIDEKLSSLLRYFPKAALVFLGGEPLAPYNREETLSLSKMFKEKYGERLTVVLFTWRLPKDIVKENLLKYVQYVDEFVMGRYLHAYRQDGFPASKNQIHIDRRTFERMIEAVLRRGHYEGSVFVRKRI
>NC_010483.1|WP_012310613.1|550139_550640_+|nitroreductase-family-protein
MSIIYRRRSIRKYQKKDVPDELVGEIIRAAMHAPSACNQQPWHFVVIRNEETKKKIAEIHPHAQMSAEAPVVILVCGDPTLEKCKGYWVQDCSAAVENLLLRATELGLGAVWCGVYPREERVKAFRELLGIPEHVVPFAIVPVGYPAEQPAQVDRFKPERIHYEKW
>NC_010483.1|WP_012310612.1|549449_550112_-|endonuclease-III-domain-containing-protein
MRLTELYRKLLEIHGSVGKWWPGTPEEIVITAILTQNTNWKNVERVMENIKNAVKGNNLLKELDSLPEEKVAELIKPAGFFNIKTKRLKALLKFLKEYNYNLSRLRDLPTHILRERLLKIKGIGKETADAILLYALEKPIFVVDSYTRRLLKRIFNIELNDYDEVQKLFMTHYPEDVRLYQEFHGLIVEHAKKFCNKTPKCGVCPLRKECYHVSQMNGFS
>NC_010483.1|WP_012310611.1|548123_549473_+|dihydrolipoyl-dehydrogenase
MYDAVIIGGGPGGYVCAIKLVQLGKKVALVEKDALGGTCTNRGCIPTKAMLTVSHLMDEMKEKASKYGLKVSGVEYDVDTIMKHVQKSVMMSRKGIEYLLNKNGVEVFKGTAVVENKNTVVVQETGEKLEAKNLVLAHGSVPSVFSPFDIDGVWTSDDVFNLKEFPKSLVIIGGGVIGVEFATFFGSFGVDVTIVEIAEHILPYEDSDVAEEVKKALKRKGVKILEKTKVSSLNRVSDGFEVALENGETLKAEKVLLAAGRKPNIPEDVKALGVKIEKGVVTDSRMRTNVENVYAIGDIRSGIMLAHVAMYEGIVAAKNIAGEEEEMDYSAVPSIIFSSPEVASVGVREKDVNSEEVVISKFPVSANGRARTMLENIGFAKVIADKKDRTVLGMSIVSPSATDMIMEGVIAVKFRMKAEDLEKAIHPHPTLTETILGALEGVSGKPIHL
>NC_010483.1|WP_012310610.1|547742_548078_+|carboxymuconolactone-decarboxylase-family-protein
MAAKEKLEQIQKQLQEIIGKAPEIGKFAEYVHMAESTKALDTKTKELISLGIAVAVRCEPCIVWHTGAAVKAGATEEEILDTIKVAVCMGGGPALMYGLKAYEIALEFLGK
>NC_010483.1|WP_004083192.1|559632_560358_+|sulfite-exporter-TauE/SafE-family-protein
MIVLVFLGGILAGFLNVLAGGGSMITLPILTALGLGIDVANGTNRIAIILQNLVAIERFKAKKVLKIKEAILVALPAIVGAILGSSIAVQIEKEMLQKIVGVIFLVMAVSLVWKPRIWLEDRFVKRNWVLIYIVFFLIGIYGGFIQAGVGFLLMPAIALLLGYELVKTNAVKVFIVASYNIISLVIFILNGKVNFLYGFILALGNMTGAWLAATFSIKKGANWVRWIVFTAVIVVGIRYVF
>NC_010483.1|WP_008193527.1|560436_561024_+|phosphate-propanoyltransferase
MTKKEPGIIVGVSNRHVHLSKEDLEILFGKGYELTPIKDLRQPGQYAAKETVTIVGPKGAIENVRVLGPVRRETQVEISRTDAFKLGLRPPVRDSGDLEGTPGIVIIGPNGILVKEKGVIIAKRHIHMHPKDAEHYGVKDKDLVKVIVESGDRKLIFDDVLIRVREDFALEFHVDTDEANAAMLNTGDFVYIVEF
>NC_010483.1|WP_004083188.1|561053_561497_-|Hsp20/alpha-crystallin-family-protein
MLLGRREDIFRPFRELQREIDRLFDDFFRTEVRPAKEFFAPDMDVYETDDEVVIEVEIPGIDRKDVKITVEENILKISGEKKLEREQKGKNYYYVERSAGKFERAIRLPDYVDVEKIKAEYKNGVLTIRVPKKEERKKKVIEVEVQE
>NC_010483.1|WP_004083187.1|561512_563303_-|molecular-chaperone-DnaK
MAEKKEFVVGIDLGTTNSVIAWMKPDGTVEVIPNAEGSRVTPSVVAFTKSGEILVGEPAKRQMILNPERTIKSIKRKMGTDYKVRIDDKEYTPQEISAFILKKLKNDAEAYLGGEIKKAVITCPAYFNDAQRQATKEAGIIAGLEVLRIINEPTAAALAYGLDKAGKEEKVLVYDLGGGTFDVSILEIGEGVIEVIATAGNNHLGGDDFDQRLIDWMAEEFKKQHGIDLREDRQALQRLRDAAEKAKIELSTKMETDVSLPFIAVSPSGQPLHLEMRITRSLFESLTRDLVEMTRGPIEQALNDAKLSPQDIDEIILVGGMTRVPMVQRFIKEFFGKEPNKSVNPDEAVAIGAAIQAAILAGTEGAKGRDIVLVDVTPLTLGIEVKGGLFEPIIPRNTKIPVRKSKIFTTVEDGQTEVEIRVYQGERPIARENIFLGSFKLVGIPPAPRGVPQIEVTFDIDSDGIVHVSAKDLGSGKEQSMVVTGRHKLSEDEIKRMIEDAKRYEEQDKRLKEEIELKNRADDLAYSVEKTLKEHGDKIPADLKSRLEDMIRELRDAINRNDIPKVKMLFDDLQKESMKIGEYLYKSATGGETSNQ
>NC_010483.1|WP_012310617.1|563536_566539_+|efflux-RND-transporter-permease-subunit
MKIAEISSRRPIAIFMLLTAVVFLGFISFQHLKLDLLPQIEYPYAVVITTYMGAGTEEVEELVTKPLEGYISSTPGVRRFTSMSMDSVSFILVEFDWNVKTSEAVGRLSRYVDLATRDLPEGANPVVVEFDPSLLPVYAFSTEDDYEDVVSKIKRLPEVASVELMGKPEKIVEVILDQEKIKRFDVDPSLIETILSGNLVYPFGYVSDSEGNIYPVSVDGRFENIEDLKNTIVGFRGVKYQSLLQGKVPNILVPVRLRNIAEVNITNESVQGEVRVNGKKASLIAIYKRSGANTVKTVREIKRILRDSKINYIEAMNQAYYTERAIDNLLKNLLYGFIAAFVVVLIFLKDFTSTIVTSFSIPLSLTITFVLLYAFGLNLDTLTLGGLIMALGMLVDNSIVVFENIYRHRSLGDPIPDAARKGAGEVWLAILASTLTTVSVFLPIVFFTGFVVRLFKYFAIAFVFALSSSLFVSTVVVPAGTRWIKPRRGKLTEALQKHYRKALEWCLKRKKLVLVISFALVAISVIYLLSKPLGFLPSFQTNLMVIDVKLPSQSSYEKTTEAVEQIEDYLNKHRNEYKISSFYSEVGITNIYSQIMGRGQNEARIMVNLGGSRREFAKNREKLKNAISQLNIPEAKIEVLEQSQQIYEILGYPVTIEVRGDDLSLIQEKAKEIFERLRELQEVKKIQIRNSFEKEVLHVKIDRNKALMNGVVTGQVFLDLQTYLLGKKIGTLRTEEGTLPIVLKKAKSLSPEDLSKISLTGLKGDVSLGAVSNISRETLPSIVEHSDGERVVYVDLVSIEGSIGEVAKKVENLLNEIDLSGVKVEITGQKSFMDEAFSELQYVVYIAIALVYMILAAQFESFTLPFIIFFTIPFAVVGVAFAVFVNGYSLNVPVLVGLLTLSGTVVNNAIVMLTRIEQIRQEKGLLEATLEGAQSRLRPILMTTFTTIVALLPTALSHAEGSEIESPISWVVIFGMLISMLFTLFVIPVIYTAIRRKVRV
>NC_010483.1|WP_004083185.1|566528_566987_-|arginine-repressor
MKISKKRRQELIRKIIHEKKISNQFQIVEELKKYGIKAVQPTVARDLKEIGAVKIMDESGNYVYKLLDETPVIDPWKELKRNFKSFVESIDRAGNLIVIKTIPGTASGIARVIDRLDIDEIVGTLAGDDTIFVAVRDPESCEKIVEKLSSIL
>NC_010483.1|WP_011943170.1|567158_567887_+|KaiC-domain-containing-protein
MIKKVKTGIPGMDEILHGGIPERNIVLISGGPGTGKTIFSQQFIWNGLQMGEPGIYVALEEHPVQVKKNMEVFGWNVDPFEKEGKFAIVDAFTGGIGEYAEKEKYVVKDIDDVRELAEVLKRAVKETQAKRVVIDSVTTLYITKPAMARSIIFQLKRILSGLGCTSLFVSQVSVTEKGFGGPGVEHGVDGIIRLDLDEIDGELKRSLIVWKMRGTSHSMRRHPFEITDKGIVIHPSEGGEEK
>NC_010483.1|WP_012310618.1|567883_568327_+|transcriptional-regulator
MKLNFNPVTKEEIHQLEIALLVGTLFRKEVLEEIRNSAERLTWVDSLAVAAGALARAKAGMTASEIAEELGRTEATIREHVKGETKAGKLVNETYELLKEGKLSVEGLIGEGIKVVTTTTGSDEKLQEVKKELEEIKQKLESVIQKL
>NC_010483.1|WP_011943172.1|568336_569446_-|MFS-transporter
MFFLTNVFRSMGTMSFNLLIQLRMKEIGATLFMIGLLSSLQGAMNTFSNVFWGRISDKIGKRKVFIILSLVLASAFYPLYAVINVPSAFLFVSMIIAFFNGMYPPAAMALSSTAKRMSLGFSLYNSSNSLGMLLSRISIGFLLMFMDLKLAFVFFSIVVAVSVIPALGLKEEKIQKKKEEDFHFGRKVMEHGIWALYLGSLLRQMGTSGSMSLIAVYLNERFHYSASTIGFVTAVNPLIQIPSHFFFGKLVEKTDPKFISVLGIFMSSLVPFLMMIPENWAPVLAYAFLGASFGAFINGSNNFLGRRFHYLQRGRALGLLSSARFLGATIGPFLAGLLAEKSYSLMFSTLGLAVLSGGIVVLLFTKDGD
>NC_010483.1|WP_012310619.1|569585_571568_-|methyl-accepting-chemotaxis-protein
MKNLPVFWKIMILVLILGAGITFVGTLSTITIRSKMLEHTDMNLLTQSEGSADALWNFLQAHTQLVDLLSRDEGVINLYRDETNEEDVKSLFEKVLKSYPNVMNVYVGLKDGRMYLVPEQELPEGYDPRVRPWYKDAVAKLGKIVITDPYADASTGKTIITIAKAVQIGQEIVGVLGLDFDCSKLVDELFKKGVEKGYMSALVDENGTITLHSKKDYIGENIKDTDFFKKWHAGSESGVFGYVFDGIPRRTGYKKLPNGWIYAIVVPEEIVYSEVKESTVVLITITLVSLVAAIVFALFMSRRYISEPLKHLASISDKIAGGDLTVEIQLNSKDEIGKLGNALTHMVKSLREIALNIKNNSSEIKRNAESVASVAQEVSSTIEEVTSQVENVESNVSNTSASIQELTSGVEEVAASAQNVSRAAQDLSEKSTQVSESAKEGEKAIKEIVEMIKQARSRAEQTASVVEELNEHARNIGQILDTINSIAEQTNLLALNAAIEAARAGEAGRGFAVVADEIRKLAEESKSATEKIGQILNQISQEVVKANEETRGTVQAVENISSRAEVVASQFDRIAQGISSIVSQIQNLAAIAEEQSAAAEEMSSAMDNASRSMVEVAEQMNEIAEAMKQQAKAVNTLSEAMNKLDQIAEKLEKGMEVFKL

Crispr_ID: NC_010483_3

• CRISPR_ID: NC_010483_3
• CRISPR_location: 590887-591315
• CRISPR_type: TypeV
• Repeat_type: III-A
• Spacer_info: 6 spacers

Consensus repeat of NC_010483_3

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAACTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAA	CRT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	PILER-CR

spacers of NC_010483_3

>3.1|590917|35|NC_010483|CRISPRCasFinder
TTAAGATGTCTATACCGGGCATTCTACAAAACAGC
>3.2|590982|36|NC_010483|CRISPRCasFinder,PILER-CR
GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
>3.3|591048|37|NC_010483|CRISPRCasFinder,PILER-CR
GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA
>3.4|591115|38|NC_010483|CRISPRCasFinder,PILER-CR
GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
>3.5|591183|37|NC_010483|CRISPRCasFinder,PILER-CR
TCACAAAAGACGGAAAAGTCGTCGCGAAAGGAAAAGA
>3.6|591250|36|NC_010483|CRISPRCasFinder,PILER-CR
GGATCAGGAAAGAGGTCTGGCCAACGGTCGAGGAAT
>3.7|590907|45|NC_010483|CRT
GTATTGAAACTTAAGATGTCTATACCGGGCATTCTACAAAACAGC
>3.8|590972|46|NC_010483|CRT
TTATTGAAACGTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
>3.9|591038|47|NC_010483|CRT
CTATTGAAACGTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA
>3.10|591105|48|NC_010483|CRT
CTATTGAAACGATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
>3.11|591173|47|NC_010483|CRT
CTATTGAAACTCACAAAAGACGGAAAAGTCGTCGCGAAAGGAAAAGA
>3.12|591240|46|NC_010483|CRT
CTATTGAAACGGATCAGGAAAGAGGTCTGGCCAACGGTCGAGGAAT

CRISPR arrays and Neighbor proteins around NC_010483_3

CRISPR arrays

The CRISPR arrays of NC_010483_3

>merge|NC_010483|3|590887-591315|CRISPRCasFinder,CRT,PILER-CR
ATTTCCATGCCTCTAAGGAAGTATTGAAACTTAAGATGTCTATACCGGGCATTCTACAAAACAGCGTTTCCATACCTCTAAGGAATTATTGAAACGTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGTGTTTCCATACCTCTAAGGAACTATTGAAACGTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGAGTTTCCATACCTCTAAGGAACTATTGAAACGATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGAGTTTCCATACCTCTAAGGAACTATTGAAACTCACAAAAGACGGAAAAGTCGTCGCGAAAGGAAAAGAGTTTCCATACCTCTAAGGAACTATTGAAACGGATCAGGAAAGAGGTCTGGCCAACGGTCGAGGAATGTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_010483|3|3|590887-591315|CRISPRCasFinder
ATTTCCATGCCTCTAAGGAAGTATTGAAAC	TTAAGATGTCTATACCGGGCATTCTACAAAACAGC
GTTTCCATACCTCTAAGGAATTATTGAAAC	GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TCACAAAAGACGGAAAAGTCGTCGCGAAAGGAAAAGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GGATCAGGAAAGAGGTCTGGCCAACGGTCGAGGAAT
GTTTCCATACCTCTAAGGAACTATTGAAAC

>NC_010483|3|3|590887-591305|CRT
ATTTCCATGCCTCTAAGGAA	GTATTGAAACTTAAGATGTCTATACCGGGCATTCTACAAAACAGC
GTTTCCATACCTCTAAGGAA	TTATTGAAACGTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
GTTTCCATACCTCTAAGGAA	CTATTGAAACGTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA
GTTTCCATACCTCTAAGGAA	CTATTGAAACGATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
GTTTCCATACCTCTAAGGAA	CTATTGAAACTCACAAAAGACGGAAAAGTCGTCGCGAAAGGAAAAGA
GTTTCCATACCTCTAAGGAA	CTATTGAAACGGATCAGGAAAGAGGTCTGGCCAACGGTCGAGGAAT
GTTTCCATACCTCTAAGGAA

>NC_010483|3|3|590952-591315|PILER-CR
GTTTCCATACCTCTAAGGAATTATTGAAAC	GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT
GTTTCCATACCTCTAAGGAACTATTGAAAC	GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GATGATGATGTAATTGTTCTTTCAGGTAGTAGATACGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	TCACAAAAGACGGAAAAGTCGTCGCGAAAGGAAAAGA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GGATCAGGAAAGAGGTCTGGCCAACGGTCGAGGAAT
GTTTCCATACCTCTAAGGAACTATTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010483.1|WP_012310628.1|581784_582693_-|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl|CDD|224513
NC_010483.1|WP_011943183.1|580700_581771_+|glycosyltransferase-family-4-protein	unknown	unknown	gnl|CDD|340831
NC_010483.1|WP_012310632.1|589602_590817_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|182528
NC_010483.1|WP_004083158.1|582695_582902_-|hypothetical-protein	unknown	unknown	unknown
NC_010483.1|WP_162009635.1|600822_600984_-|hypothetical-protein	unknown	unknown	unknown
NC_010483.1|WP_011943198.1|601005_601506_-|hypothetical-protein	unknown	unknown	unknown
NC_010483.1|WP_012310633.1|592964_594443_-|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB	unknown	unknown	gnl|CDD|172457
NC_010483.1|WP_011943186.1|584273_585479_-|threonine-ammonia-lyase	unknown	unknown	gnl|CDD|236182
NC_010483.1|WP_008193562.1|582983_584192_-|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl|CDD|341465
NC_010483.1|WP_012310630.1|586648_587911_+|TolC-family-protein	unknown	unknown	gnl|CDD|367035
NC_010483.1|WP_011943195.1|595517_596279_-|shikimate-dehydrogenase	unknown	unknown	gnl|CDD|223247
NC_010483.1|WP_008193575.1|588911_589616_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213222
NC_010483.1|WP_011943197.1|599568_600810_-|MFS-transporter	unknown	unknown	gnl|CDD|340863
NC_010483.1|WP_012310629.1|585646_586633_+|TolC-family-protein	unknown	unknown	gnl|CDD|224455
NC_010483.1|WP_011943194.1|594390_595521_-|chorismate-synthase	unknown	unknown	gnl|CDD|272865
NC_010483.1|WP_004083127.1|597537_598299_-|prephenate-dehydrogenase	unknown	unknown	gnl|CDD|223364
NC_010483.1|WP_012310631.1|587907_588915_+|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl|CDD|273776
NC_010483.1|WP_004083125.1|598295_599312_-|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl|CDD|181535
NC_010483.1|WP_011943192.1|592533_592968_-|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl|CDD|235443
NC_010483.1|WP_011943196.1|596275_597541_-|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl|CDD|235037

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010483.1|WP_012310628.1|581784_582693_-|diacylglycerol-kinase-family-lipid-kinase	gnl|CDD|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	3.91972e-91
NC_010483.1|WP_011943183.1|580700_581771_+|glycosyltransferase-family-4-protein	gnl|CDD|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	3.75297e-21
NC_010483.1|WP_008193575.1|588911_589616_+|ABC-transporter-ATP-binding-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.69942e-125
NC_010483.1|WP_012310632.1|589602_590817_+|ABC-transporter-permease	gnl|CDD|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	3.79203e-52
NC_010483.1|WP_011943186.1|584273_585479_-|threonine-ammonia-lyase	gnl|CDD|236182	PRK08198, PRK08198, threonine dehydratase; Provisional.	0
NC_010483.1|WP_008193562.1|582983_584192_-|iron-containing-alcohol-dehydrogenase	gnl|CDD|341465	cd08186, Fe-ADH-like, Iron-containing alcohol dehydrogenase. This family contains iron-containing alcohol dehydrogenase (ADH) which catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols, preferentially from C2 to C8, but is also active towards methanol and glycerol, and is stereospecific for monoterpenes. It has been suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.	0
NC_010483.1|WP_012310630.1|586648_587911_+|TolC-family-protein	gnl|CDD|367035	pfam02321, OEP, Outer membrane efflux protein. The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm.	1.87512e-11
NC_010483.1|WP_011943195.1|595517_596279_-|shikimate-dehydrogenase	gnl|CDD|223247	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism].	1.6478e-82
NC_010483.1|WP_012310633.1|592964_594443_-|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB	gnl|CDD|172457	PRK13951, PRK13951, bifunctional shikimate kinase AroK/3-dehydroquinate synthase AroB.	0
NC_010483.1|WP_011943197.1|599568_600810_-|MFS-transporter	gnl|CDD|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.14348e-72
NC_010483.1|WP_012310629.1|585646_586633_+|TolC-family-protein	gnl|CDD|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	2.72044e-15
NC_010483.1|WP_011943194.1|594390_595521_-|chorismate-synthase	gnl|CDD|272865	TIGR00033, Chorismate_synthase, chorismate synthase. Homotetramer (noted in E.coli) suggests reason for good conservation. [Amino acid biosynthesis, Aromatic amino acid family].	6.61219e-168
NC_010483.1|WP_004083127.1|597537_598299_-|prephenate-dehydrogenase	gnl|CDD|223364	COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and metabolism].	9.77158e-66
NC_010483.1|WP_012310631.1|587907_588915_+|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl|CDD|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.16165e-34
NC_010483.1|WP_004083125.1|598295_599312_-|3-deoxy-7-phosphoheptulonate-synthase	gnl|CDD|181535	PRK08673, PRK08673, 3-deoxy-7-phosphoheptulonate synthase; Reviewed.	0
NC_010483.1|WP_011943192.1|592533_592968_-|type-II-3-dehydroquinate-dehydratase	gnl|CDD|235443	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase.	5.66011e-87
NC_010483.1|WP_011943196.1|596275_597541_-|3-phosphoshikimate-1-carboxyvinyltransferase	gnl|CDD|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0

Protein sequences

>NC_010483.1|WP_012310632.1|589602_590817_+|ABC-transporter-permease
MEILKEVLRSLLANKMRTFLSMLGIVIGVTAVIMVMSLGAGMKESVTERLTSLGSNIIMITPGFTGGRGGTIAQSVESLEEDDVEDILKMCPSVDKAIGLVNGSFLVQYRETNTRSNVYSAPADIFHILNLKVSSGRTFSQEDNTANVAIIGQEVAYNLFGNENPLGKKIYLVQGNRKLVFEIIGIFERTGSILMFNPDNMILIPYETGKFRVFQTHGKVSMILATSKSADVAQRAVMEIDHLLYTKFHEEESYYNIISQQAILNVVSESVSIINLVLVAIAAVSLIVGGIGIMNIMLVSVVERTREIGIKMAIGASRLRILLEFLVESVVITFVAGAIGVALGILGSNTIVNTFGSQYGLKAVIDPLSVIVAFGVSASVGLFFGFYPAYRASRLSPIEALRYE
>NC_010483.1|WP_008193575.1|588911_589616_+|ABC-transporter-ATP-binding-protein
MKKVMELVDVWKIYDLGEVKVEALRGVSFEVFEGEYVIIIGPSGSGKSTLLHILGCLDRPTKGKVLIEGEEVSRMGDRRLAQVRNRKIGFVFQSYNLLPRLTALENVELPMIYAGVPAKERKRRAKELLELVGLGDRLHHRPNQLSGGQQQRVAIARALANDPVFILADEPTGNLDTKTGEEILELFRKLHEMGKTLVVVTHNLEMVDEGTCIVRIRDGKIEGVERRGVVYGDT
>NC_010483.1|WP_012310631.1|587907_588915_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKWITLLIIAVLVVLVIVVIFLNRASAQTVSEKDATSTQAPVYLTYTVTKENETVEIVGQVTADTKKVTSKVSGDVLEIYVEEGDVVQVGQKIAKIDDTDYQISYLSALNSYKTSPTEINRLNLEKAKENLENTTVVSPVNGVVQSVNVDVGDSVSVGTSIVTIVETDTLRVEGSISEYDLKNVKEGMKAVFTFEQLGLTLTGKVKRISPVAETSGGVTVIPVEFSFDQIPPSLVIPGLTCDVEIIIKEATSSFFVPKEAVSQDQNGYYVMKQTPQGPQKVYVEVGEELNDKIEIKKGVSEGDVLLLIPSQQEIQRLRTRQGLPMFGPGGGRAR
>NC_010483.1|WP_012310630.1|586648_587911_+|TolC-family-protein
MKRFFLVFLLVPVFLVGNVFDLFEENLKNSSGYWSSVEKFKEAQLNYKRYTNFWNPEISVSLGKTGITITEDGISDFSISPIVNFVNIYGFELGLSFPISVNTDDWSFNFEGTQLSVSRNLKTEYTVDKLKTEANYLSSKYSLKSTKNSIFIQTVQDIFDWYYYTKKIEILSQRLQVLNEKLSKAKDDDEKKALEKQILSTEQTLRSAEYSLQTIQTKNIDEEVYQKTRKFLEGVTLPATTLEYREDLKALELQKKAEEIEKKTWFLPYLPELTFSFNYDFEDSEWSIGIGFQMTLWDFGERKLEAEKRKSQLVSLEYQEKVRNIENSLSQELVNIANLESQLRQKEIELEDLEESSKTNDQLFRKGFLSEEDYTLSKLDYVEGTLEKENLENSLILEKLKYISILGYDLEKFLKEGDQN
>NC_010483.1|WP_012310629.1|585646_586633_+|TolC-family-protein
MKNLFVALLSLVSVLSFSVSLNDVLQTALASSTDYQIAQINLESATMDYEKAKLEATNKRSELSAELSYYNNLQSYRNSLKSAYQDVLGRIFNLLTADLSYEIAQLNFENAQEDYKTSQELFKKNLISENDLKDSELTLEEASNNLLSAQKDLEEAQKDYEEIFSVEVSEIELPLIDYQNLVSEDEYLDNLSSVKIAELNMKIAEYDLNNLSASASKYEQKKAELNYKKSKMNYDEALKEAKDSYKSTLDSLEIAFLNLKVLKEKVDLNENILKDYQERYEKGLISKKELNTQKINLLNTKKNYFNSLRSYYTSIVNFLIDAGKEVSF
>NC_010483.1|WP_011943186.1|584273_585479_-|threonine-ammonia-lyase
MITLEDIKEAQRTLKNVVHRTALAYSSVLSEVTGGEIYLKMENLQKTGSFKIRGAYNKIAHLSEEERKRGVVAASAGNHAQGVALAAQIFGIPATIVMPKYAPLSKITKTRNLGAQVILEGNIFDEAYEAALRIQEKTGAVFVHPFNDPHVIAGQGTIGLEIMEDLPDVEVVVVPVGGGGLISGVSVAIKSMNPEVKVIGVQTENMPSMIASLRRGRAERVEGKPTLADGIAVKKPGDLTFELVKKYVDEMVVVNEEEIADAILFLLEQAKVVAEGAGAVGVAAVLNKLDVKGKKVAIVISGGNIDVNMIDRIINKGLVKSGRKVFIETFVMDRPGALKELLGIVAELGANVLSVFHNRSAKEVPIGFAKIELELETVDEKHVEEIERVLIAKGYEVRIVV
>NC_010483.1|WP_008193562.1|582983_584192_-|iron-containing-alcohol-dehydrogenase
MWSKEINIKNVIEIRTKTTCYFGAGALAKIEDILDFLKERGIKSVVVVSDKVAYKVTGAWDKVKPALEKRGIEYVVYDDVTPNPTTEQINEATKKALEINAQAVIGIGGGSPIDTAKSVAILLEYPEKTAEELYEQKFIPEKAKPIIAINTTHGTGTEVDRFAVASILEKEYKPPIAYDCIYPTFSIDDPELTKSLPEKQSIYTSLDALNHITEAATTSLGNPFSINLARNTVELISEYLPEVLKKPDNLEARYFLMYASAIAGISFDNGMLHLTHALEHPLSAIKPDLPHGLGLAMLLPAVFKYTYKAKPQILAYVYQPIIPDLKGRPNEAEEAASKLEQWIFNLGVKEKLADVGFSEKDIPKLVRLAFETPALDLLLNLAPMKVDENLVEAIYKESLKPY
>NC_010483.1|WP_004083158.1|582695_582902_-|hypothetical-protein
MRFVSDFLFFAGFGLLFIAIVFFDLGTRAIKKKQNQKKKFYDKKGWQFLSVSLGAFAVSILLALIGRG
>NC_010483.1|WP_012310628.1|581784_582693_-|diacylglycerol-kinase-family-lipid-kinase
MVFLIYNPAAGGGRAGKIWDRVEDLLKKHGIDHKVAFTERPGRAMEISKKAFKEGYRRIAAFGGDGTVNEVVNGIFLNGYDLREVVFGWIPFGSGKDWARTIGVPLEIEEAIKTLKDGKEFVQDLGVGEYEKASGEIEKRAFVNVAGLFFDGFVTYRTNLLKRKNRVSYFSRIFSSIIEYDPPTARIQIDEKVWEKRVFSMNVGICKYNGGGMNQLPHAVPDDGLLAVTVINDIGKLRILANLHRVFNGKLLEHPGVEGYQAKKVVVEFQRDEPVEFDGESFWAKKIFFSIIPGVIRVLVKK
>NC_010483.1|WP_011943183.1|580700_581771_+|glycosyltransferase-family-4-protein
MKIGFLSRWGATCGVGMHAEILAREFIRMGHEVVVFAPTEESASKEVKYYKRTEAQDPEFVKREIYTEVDNVTEEGWVKEEEILKENLDLLIIETFWRVPVKPLTRLIEKLKIPVISVFHEANIFKAREVVKLPCDKIVVFDRRFYDEILEFYEIPREKVEVISYPVMKPYDVEPERPVSEDKFLFFSFGRQPVEEYCDFLNALKKLRKRFDNVHYWIIRSDGRVDYEAEWITQWQKRPTVEKLYSYLKGSNVHLLPKGNTPNVVVSSTLYQIIASETPIVIRDSRFVETIETDAYGFGPIVKYRNIHDLVHKLELLMLDREQVEDIKKEVRVFVEKYGGDKIAQEFLDLAKTITK
>NC_010483.1|WP_011943192.1|592533_592968_-|type-II-3-dehydroquinate-dehydratase
MKVLVVNGPNLNMLGKRDKNIYGNFSHEDLVKMIEDWGRKNDVEVEVFQSNHEGEILDRLHRLDFDGLVINPGAFTHYSYAIRDALEIVKVPKVEVHISNIHRREEFRRRSVTAEVCDGQISGLGVYGYLLALEYIKKKLEELT
>NC_010483.1|WP_012310633.1|592964_594443_-|bifunctional-shikimate-kinase-AroK/3-dehydroquinate-synthase-AroB
MRIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVVIDPENRELLKKEKTLFLYAPPEVLMERVTTENRPLLREGKERIREIWERRKQFYTEFRGIDTSKLNEWETTALVVLEALDEKEISTIEKPHLVKIILGGFKRVRNEELVFTTERVEKIYGRYLPENRLLFPDGEEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTTLLAQVDASVGGKNAIDFAGVKNVVGTFRMPDYVIIDPTVTLSMDEGRFEEGVVEAFKMTILSGRGVELFDEPEKIEKRNLRVLSEMVKISVEDKARIVMEDPYDMGLRHALNLGHTLGHVYEMLEGVPHGIAVAWGIEKETMYLYRKGIVPKETMRWIVEKVKQIVPIPVPSVDVEKARNLILNDKKILKGSRVRLPYVKEIGKIEFLEVDPLELLEVVD
>NC_010483.1|WP_011943194.1|594390_595521_-|chorismate-synthase
MRLTIAGDSHGKYMIAVLEGIPAGLKIDEEIIRRELFRRRNCYGRGKRMSMEEDAFEIVSGVWGGITTGAPVTILVPNKAGNPVKDVRSVPRPGHIDYAAFVKYKLPDLNVYVERSSARWTVALTAAGALLKSLLREFNIDVLGFVTRLGNVEAKNIPDNFEELRRKRDESAVFCPDPEATEGMISEIDRAKEEGNTLGGKVKVIARGVPAGIGSYSDLFKKLDSKIGSLFFAIPAVKGVVIGSEEMWYGFDYLDEFELEDGRIKRRTNNLGGIEGGITNGEDVWVNVFVKPIPTTGKPLNSVDLRTMEPAKTPYVRSDVTAVPPASVVCEAALAVVISDALLEHLGDGNIDDLKRRFGNENLPRWDDGFWKEYDR
>NC_010483.1|WP_011943195.1|595517_596279_-|shikimate-dehydrogenase
MKFCIIGYPVSHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYDGFNATIPHKERVMRYVEPSEDAQRIKAVNCVFRGKGYNTDWVGVVKSLEGVEVKEPVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEKLTVSEASLKGLYLVYDVVYFETPLVSDAKRLGVEHVVKGNLMFYYQAMENLKIWGIYDERSFKEVFEEVLR
>NC_010483.1|WP_011943196.1|596275_597541_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKVLPAKKVEGVLSVPPDKSITHRALILSALAETESTLYNLLRCLDTERTHDILEKLGTRFEGDWEKMKVFPKPFAEPIEPLFCGNSGTTTRLMSGVLASYEMFTVLYGDSSLSRRPMRRVIEPLEMMGARFMARQNNYLPMAIKGNHLSGISYKTPVASAQVKSAVLLAGLRASGRTIVIEPAKSRDHTERMLKNLGVPVEVEGTRVVLEPATFRGFTMKVPGDISSAAFFVVLGAIHPNARITVTDVGLNPTRTGLLEVMKLMGANLEWEITEENLEPIGTVRVETSPNLKGVVVPEHLVPLMIDELPLVALLGVFAEGETVVRNAEELRKKESDRIRVLVENFKRLGVEIEEFKDGFKIVGKQSIKGGSVDPEGDHRMAMLFSIAGLVSEEGVDVKDHECVAVSFPNFYELLERVVIS
>NC_010483.1|WP_004083127.1|597537_598299_-|prephenate-dehydrogenase
MKISVLGAGCIGGSIALKLKEKHHVTAFDRDEETMKALEENGIETVSKESDLYDTDLLVLALPMSVEERFLKETDFSGKILDVASVKTPFMEIARERGLNFTGGHPMAGNERKGKSGWDREMFDGKIFFLCSLDGKEDGMIENIVKDLGARPLWIDYRIHDEIVAAVSHVQYLISLSARYVGKPFEEYAGPGYLSNTRLSKQNMEMALDMIRYNKENILKYLENARNFLNVLYHLTEKEDFENLKKVIREVIS
>NC_010483.1|WP_004083125.1|598295_599312_-|3-deoxy-7-phosphoheptulonate-synthase
MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLDCVESVVRVLKPYKLVSREFHPEDTVIDLGDVKIGNGYFTIIAGPCSVEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPKVAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALGVKVN
>NC_010483.1|WP_011943197.1|599568_600810_-|MFS-transporter
MNELLHWKRNFFLLALGRFVSILGSSIQAVAIPLFVLDLTHSGSAVALMTVAYMVPRILFTPIAGIVGDRGDRKFLMVSMDFLRGFLICFLALLAFRNSVTLPVLYVSQIAMAVMDNLFDIPTGAMFPDIVPQDFLMRANSIMGMVRIFPQILGPALGGVIYGFYGIAIVFLVNGVSFVLSAISEIFIVYSRKVEKKPAKFSQILEDLKEGFLFIWNHELIRTILIFALFLNLLISPLFMVVYPYTIREVMKFSAQEFGFLETSFTLGALLGNFLIASYLSKKNMWKAMKISIFLFELPIVFLGFLVMPDFSLNRLVLFSLFFITFLIMGFLNPIINVPLDTAFQKMTPSHIRARAFSFLILVANGVTPLGSVLYGYLVDRVPVHFLYYIVGALSFLVAVLLLVALRGKELPT
>NC_010483.1|WP_162009635.1|600822_600984_-|hypothetical-protein
MVSTILVVMLFSLIWLYVLFFSTVETAPSSPAVWELGVTETSSAMVPGSLQDR
>NC_010483.1|WP_011943198.1|601005_601506_-|hypothetical-protein
MSEEIRKILEAVARGEISPEEGEMLIKAVQEKEREEIGPKGDFSEREGDYILGENEIVEEDLVLSKKKAIIRGKIKGDLALINCETFFSGEVEGDLAVIGGKIEFDGGTVKGDLALIGVKESGKTPVVEGDIARISNFFVSGILKMVSPFISNISVSSKKKVEGKE

Crispr_ID: NC_010483_4

• CRISPR_ID: NC_010483_4
• CRISPR_location: 974477-976309
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 27 spacers

Consensus repeat of NC_010483_4

Consensus_repeat	Method
GTTTCCATACCTCTAAGGAATTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAA	CRT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	PILER-CR

spacers of NC_010483_4

>4.1|974507|37|NC_010483|CRISPRCasFinder
AGCTTGAGGAGATTTACTCATCACCTGGATATGTTTA
>4.2|974574|37|NC_010483|CRISPRCasFinder
TGTGGTTGCTCCAGTCCTGGCTGCGTAATGAAATTAA
>4.3|974641|38|NC_010483|CRISPRCasFinder
GAGAACGACGATCTCAAAAAGCAACTTGAGGAATATTT
>4.4|974709|38|NC_010483|CRISPRCasFinder
GCAGTCAAGCCAGAGCTCGAGGAGATAGACGTTGTCCT
>4.5|974777|35|NC_010483|CRISPRCasFinder
ACCTAGCATTGTGTGTATGAGGATGTAGTGGTTTG
>4.6|974842|35|NC_010483|CRISPRCasFinder
TTCCAATCCCTTTTTGAACATCTCCCAAAGCCATT
>4.7|974907|37|NC_010483|CRISPRCasFinder
CAGTTAGCAAGATCCGACATTTTTGCGATGATGAAGG
>4.8|974974|37|NC_010483|CRISPRCasFinder
TCTTCGCAAGCAGGAATGATACGCTGTTTGTCTGTTT
>4.9|975041|37|NC_010483|CRISPRCasFinder
ATGCTGTCGTTGAAGTTTGTTTTTCCTTCGCTGTAGA
>4.10|975108|38|NC_010483|CRISPRCasFinder
CTAAGGTGGGGGTGAAAGGTATGGTGAAGGTGAAGGCT
>4.11|975176|35|NC_010483|CRISPRCasFinder
CCGGTGGGGTCGCTGGGTGTGTCCAGAGGCGCCCT
>4.12|975241|37|NC_010483|CRISPRCasFinder
TTCACATAGCTGCTTGGAATCCTGGCGAATCAAAAGT
>4.13|975308|36|NC_010483|CRISPRCasFinder
GTTGCGAGTAGATGATGATTTTTACGACGATACTAT
>4.14|975374|36|NC_010483|CRISPRCasFinder
CAGCCACAAATGACCATAAAAACTTGGTGCTTGCCG
>4.15|975440|37|NC_010483|CRISPRCasFinder
GCATATTCGGTCTTATGCTGTTTTTCAGAAGTAGAGA
>4.16|975507|36|NC_010483|CRISPRCasFinder
ACGTAGATTTAACTTGACATAGGAATTGTCAAATGG
>4.17|975573|40|NC_010483|CRISPRCasFinder
ATACCTTCGTAGTTACCCTCACCAGAGACGCCAACGGCTT
>4.18|975643|39|NC_010483|CRISPRCasFinder
CAAGAGAAGTAAGAATAGCTGTAAGATTCGCAAATGCTT
>4.19|975712|37|NC_010483|CRISPRCasFinder
AGGGCTTGTTGCAAATCTTCTCATTGCCCGCTACGAC
>4.20|975779|39|NC_010483|CRISPRCasFinder
TGTGTTCGAGATCGTCAACTACCTCACGACGAAGATCTA
>4.21|975848|35|NC_010483|CRISPRCasFinder
CTATAGGCATACTATAGTTTGCTATAGGCATACTA
>4.22|975913|35|NC_010483|CRISPRCasFinder
CTGCATAATCTTCTGCGATGTTTCTTGTGTAAAAG
>4.23|975978|35|NC_010483|CRISPRCasFinder
CAGAATCAACTCGAAGACCTTCAGCAAACAACAGC
>4.24|976043|37|NC_010483|CRISPRCasFinder
AGACTAAGTGGGAAAAGCTCGCAGAGGAAGATCCAAC
>4.25|976110|37|NC_010483|CRISPRCasFinder
TCGTCGAGTGGAGCGATGTTGTGTTCAGCATAAGCGA
>4.26|976177|38|NC_010483|CRISPRCasFinder
GTTGTCAACAAGCAAAGCACTCGGTACGAATTTATCCC
>4.27|976245|35|NC_010483|CRISPRCasFinder
CATGGTAGAAGCGGGTAAGTGGACGATAGAAGACG
>4.28|974497|47|NC_010483|CRT
GTATTGAAACAGCTTGAGGAGATTTACTCATCACCTGGATATGTTTA
>4.29|974564|47|NC_010483|CRT
TTATTGAAACTGTGGTTGCTCCAGTCCTGGCTGCGTAATGAAATTAA
>4.30|974631|48|NC_010483|CRT
CTATTGAAACGAGAACGACGATCTCAAAAAGCAACTTGAGGAATATTT
>4.31|974699|48|NC_010483|CRT
GTATTGAAACGCAGTCAAGCCAGAGCTCGAGGAGATAGACGTTGTCCT
>4.32|974767|45|NC_010483|CRT
GTATTGAAACACCTAGCATTGTGTGTATGAGGATGTAGTGGTTTG
>4.33|974832|45|NC_010483|CRT
GTATTGAAACTTCCAATCCCTTTTTGAACATCTCCCAAAGCCATT
>4.34|974897|47|NC_010483|CRT
GTATTGAAACCAGTTAGCAAGATCCGACATTTTTGCGATGATGAAGG
>4.35|974964|47|NC_010483|CRT
GTATTGAAACTCTTCGCAAGCAGGAATGATACGCTGTTTGTCTGTTT
>4.36|975031|47|NC_010483|CRT
GTATTGAAACATGCTGTCGTTGAAGTTTGTTTTTCCTTCGCTGTAGA
>4.37|975098|48|NC_010483|CRT
GTATTGAAACCTAAGGTGGGGGTGAAAGGTATGGTGAAGGTGAAGGCT
>4.38|975166|45|NC_010483|CRT
GTATTGAAACCCGGTGGGGTCGCTGGGTGTGTCCAGAGGCGCCCT
>4.39|975231|47|NC_010483|CRT
GTATTGAAACTTCACATAGCTGCTTGGAATCCTGGCGAATCAAAAGT
>4.40|975298|46|NC_010483|CRT
GTATTGAAACGTTGCGAGTAGATGATGATTTTTACGACGATACTAT
>4.41|975364|46|NC_010483|CRT
GTATTGAAACCAGCCACAAATGACCATAAAAACTTGGTGCTTGCCG
>4.42|975430|47|NC_010483|CRT
GTATTGAAACGCATATTCGGTCTTATGCTGTTTTTCAGAAGTAGAGA
>4.43|975497|46|NC_010483|CRT
GTATTGAAACACGTAGATTTAACTTGACATAGGAATTGTCAAATGG
>4.44|975563|50|NC_010483|CRT
TTATTGAAACATACCTTCGTAGTTACCCTCACCAGAGACGCCAACGGCTT
>4.45|975633|49|NC_010483|CRT
TTATTGAAACCAAGAGAAGTAAGAATAGCTGTAAGATTCGCAAATGCTT
>4.46|975702|47|NC_010483|CRT
TTATTGAAACAGGGCTTGTTGCAAATCTTCTCATTGCCCGCTACGAC
>4.47|975769|49|NC_010483|CRT
TTATTGAAACTGTGTTCGAGATCGTCAACTACCTCACGACGAAGATCTA
>4.48|975838|45|NC_010483|CRT
TTATTGAAACCTATAGGCATACTATAGTTTGCTATAGGCATACTA
>4.49|975903|45|NC_010483|CRT
TTATTGAAACCTGCATAATCTTCTGCGATGTTTCTTGTGTAAAAG
>4.50|975968|45|NC_010483|CRT
TTATTGAAACCAGAATCAACTCGAAGACCTTCAGCAAACAACAGC
>4.51|976033|47|NC_010483|CRT
TTATTGAAACAGACTAAGTGGGAAAAGCTCGCAGAGGAAGATCCAAC
>4.52|976100|47|NC_010483|CRT
TTATTGAAACTCGTCGAGTGGAGCGATGTTGTGTTCAGCATAAGCGA
>4.53|976167|48|NC_010483|CRT
TTATTGAAACGTTGTCAACAAGCAAAGCACTCGGTACGAATTTATCCC
>4.54|976235|45|NC_010483|CRT
TTATTGAAACCATGGTAGAAGCGGGTAAGTGGACGATAGAAGACG
>4.55|974508|37|NC_010483|PILER-CR
AGCTTGAGGAGATTTACTCATCACCTGGATATGTTTA
>4.56|974575|37|NC_010483|PILER-CR
TGTGGTTGCTCCAGTCCTGGCTGCGTAATGAAATTAA
>4.57|974642|38|NC_010483|PILER-CR
GAGAACGACGATCTCAAAAAGCAACTTGAGGAATATTT
>4.58|974710|38|NC_010483|PILER-CR
GCAGTCAAGCCAGAGCTCGAGGAGATAGACGTTGTCCT
>4.59|974778|35|NC_010483|PILER-CR
ACCTAGCATTGTGTGTATGAGGATGTAGTGGTTTG
>4.60|974843|35|NC_010483|PILER-CR
TTCCAATCCCTTTTTGAACATCTCCCAAAGCCATT
>4.61|974908|37|NC_010483|PILER-CR
CAGTTAGCAAGATCCGACATTTTTGCGATGATGAAGG
>4.62|974975|37|NC_010483|PILER-CR
TCTTCGCAAGCAGGAATGATACGCTGTTTGTCTGTTT
>4.63|975042|37|NC_010483|PILER-CR
ATGCTGTCGTTGAAGTTTGTTTTTCCTTCGCTGTAGA
>4.64|975109|38|NC_010483|PILER-CR
CTAAGGTGGGGGTGAAAGGTATGGTGAAGGTGAAGGCT
>4.65|975177|35|NC_010483|PILER-CR
CCGGTGGGGTCGCTGGGTGTGTCCAGAGGCGCCCT
>4.66|975242|37|NC_010483|PILER-CR
TTCACATAGCTGCTTGGAATCCTGGCGAATCAAAAGT
>4.67|975309|36|NC_010483|PILER-CR
GTTGCGAGTAGATGATGATTTTTACGACGATACTAT
>4.68|975375|36|NC_010483|PILER-CR
CAGCCACAAATGACCATAAAAACTTGGTGCTTGCCG
>4.69|975441|37|NC_010483|PILER-CR
GCATATTCGGTCTTATGCTGTTTTTCAGAAGTAGAGA
>4.70|975508|36|NC_010483|PILER-CR
ACGTAGATTTAACTTGACATAGGAATTGTCAAATGG
>4.71|975574|40|NC_010483|PILER-CR
ATACCTTCGTAGTTACCCTCACCAGAGACGCCAACGGCTT
>4.72|975644|39|NC_010483|PILER-CR
CAAGAGAAGTAAGAATAGCTGTAAGATTCGCAAATGCTT
>4.73|975713|37|NC_010483|PILER-CR
AGGGCTTGTTGCAAATCTTCTCATTGCCCGCTACGAC
>4.74|975780|39|NC_010483|PILER-CR
TGTGTTCGAGATCGTCAACTACCTCACGACGAAGATCTA
>4.75|975849|35|NC_010483|PILER-CR
CTATAGGCATACTATAGTTTGCTATAGGCATACTA
>4.76|975914|35|NC_010483|PILER-CR
CTGCATAATCTTCTGCGATGTTTCTTGTGTAAAAG
>4.77|975979|35|NC_010483|PILER-CR
CAGAATCAACTCGAAGACCTTCAGCAAACAACAGC
>4.78|976044|37|NC_010483|PILER-CR
AGACTAAGTGGGAAAAGCTCGCAGAGGAAGATCCAAC
>4.79|976111|37|NC_010483|PILER-CR
TCGTCGAGTGGAGCGATGTTGTGTTCAGCATAAGCGA
>4.80|976178|38|NC_010483|PILER-CR
GTTGTCAACAAGCAAAGCACTCGGTACGAATTTATCCC
>4.81|976246|35|NC_010483|PILER-CR
CATGGTAGAAGCGGGTAAGTGGACGATAGAAGACG

CRISPR arrays and Neighbor proteins around NC_010483_4

CRISPR arrays

The CRISPR arrays of NC_010483_4

>merge|NC_010483|4|974477-976309|CRISPRCasFinder,CRT,PILER-CR
TTTTTCGTACATTTAAGGAAGTATTGAAACAGCTTGAGGAGATTTACTCATCACCTGGATATGTTTAGTTTCCATACCTCTAAGGAATTATTGAAACTGTGGTTGCTCCAGTCCTGGCTGCGTAATGAAATTAAGTTTCCATACCTCTAAGGAACTATTGAAACGAGAACGACGATCTCAAAAAGCAACTTGAGGAATATTTGTTTCCATACCTCTAAGGAAGTATTGAAACGCAGTCAAGCCAGAGCTCGAGGAGATAGACGTTGTCCTGTTTCCATACCTCTAAGGAAGTATTGAAACACCTAGCATTGTGTGTATGAGGATGTAGTGGTTTGGTTTCCATACCTCTAAGGAAGTATTGAAACTTCCAATCCCTTTTTGAACATCTCCCAAAGCCATTGTTTCCATACCTCTAAGGAAGTATTGAAACCAGTTAGCAAGATCCGACATTTTTGCGATGATGAAGGGTTTCCATACCTCTAAGGAAGTATTGAAACTCTTCGCAAGCAGGAATGATACGCTGTTTGTCTGTTTGTTTCCATACCTCTAAGGAAGTATTGAAACATGCTGTCGTTGAAGTTTGTTTTTCCTTCGCTGTAGAGTTTCCATACCTCTAAGGAAGTATTGAAACCTAAGGTGGGGGTGAAAGGTATGGTGAAGGTGAAGGCTGTTTCCATACCTCTAAGGAAGTATTGAAACCCGGTGGGGTCGCTGGGTGTGTCCAGAGGCGCCCTGTTTCCATACCTCTAAGGAAGTATTGAAACTTCACATAGCTGCTTGGAATCCTGGCGAATCAAAAGTGTTTCCATACCTCTAAGGAAGTATTGAAACGTTGCGAGTAGATGATGATTTTTACGACGATACTATGTTTCCATACCTCTAAGGAAGTATTGAAACCAGCCACAAATGACCATAAAAACTTGGTGCTTGCCGGTTTCCATACCTCTAAGGAAGTATTGAAACGCATATTCGGTCTTATGCTGTTTTTCAGAAGTAGAGAGTTTCCATACCTCTAAGGAAGTATTGAAACACGTAGATTTAACTTGACATAGGAATTGTCAAATGGGTTTCCATACCTCTAAGGAATTATTGAAACATACCTTCGTAGTTACCCTCACCAGAGACGCCAACGGCTTGTTTCCATACCTCTAAGGAATTATTGAAACCAAGAGAAGTAAGAATAGCTGTAAGATTCGCAAATGCTTGTTTCCATACCTCTAAGGAATTATTGAAACAGGGCTTGTTGCAAATCTTCTCATTGCCCGCTACGACGTTTCCATACCTCTAAGGAATTATTGAAACTGTGTTCGAGATCGTCAACTACCTCACGACGAAGATCTAGTTTCCATACCTCTAAGGAATTATTGAAACCTATAGGCATACTATAGTTTGCTATAGGCATACTAGTTTCCATACCTCTAAGGAATTATTGAAACCTGCATAATCTTCTGCGATGTTTCTTGTGTAAAAGGTTTCCATACCTCTAAGGAATTATTGAAACCAGAATCAACTCGAAGACCTTCAGCAAACAACAGCGTTTCCATACCTCTAAGGAATTATTGAAACAGACTAAGTGGGAAAAGCTCGCAGAGGAAGATCCAACGTTTCCATACCTCTAAGGAATTATTGAAACTCGTCGAGTGGAGCGATGTTGTGTTCAGCATAAGCGAGTTTCCATACCTCTAAGGAATTATTGAAACGTTGTCAACAAGCAAAGCACTCGGTACGAATTTATCCCGTTTCCATACCTCTAAGGAATTATTGAAACCATGGTAGAAGCGGGTAAGTGGACGATAGAAGACGGTTTCCATACCTCTAAGGAATTATTGAAAC

>NC_010483|4|4|974477-976309|CRISPRCasFinder
TTTTTCGTACATTTAAGGAAGTATTGAAAC	AGCTTGAGGAGATTTACTCATCACCTGGATATGTTTA
GTTTCCATACCTCTAAGGAATTATTGAAAC	TGTGGTTGCTCCAGTCCTGGCTGCGTAATGAAATTAA
GTTTCCATACCTCTAAGGAACTATTGAAAC	GAGAACGACGATCTCAAAAAGCAACTTGAGGAATATTT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GCAGTCAAGCCAGAGCTCGAGGAGATAGACGTTGTCCT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACCTAGCATTGTGTGTATGAGGATGTAGTGGTTTG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTCCAATCCCTTTTTGAACATCTCCCAAAGCCATT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CAGTTAGCAAGATCCGACATTTTTGCGATGATGAAGG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TCTTCGCAAGCAGGAATGATACGCTGTTTGTCTGTTT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ATGCTGTCGTTGAAGTTTGTTTTTCCTTCGCTGTAGA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CTAAGGTGGGGGTGAAAGGTATGGTGAAGGTGAAGGCT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CCGGTGGGGTCGCTGGGTGTGTCCAGAGGCGCCCT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTCACATAGCTGCTTGGAATCCTGGCGAATCAAAAGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GTTGCGAGTAGATGATGATTTTTACGACGATACTAT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	CAGCCACAAATGACCATAAAAACTTGGTGCTTGCCG
GTTTCCATACCTCTAAGGAAGTATTGAAAC	GCATATTCGGTCTTATGCTGTTTTTCAGAAGTAGAGA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACGTAGATTTAACTTGACATAGGAATTGTCAAATGG
GTTTCCATACCTCTAAGGAATTATTGAAAC	ATACCTTCGTAGTTACCCTCACCAGAGACGCCAACGGCTT
GTTTCCATACCTCTAAGGAATTATTGAAAC	CAAGAGAAGTAAGAATAGCTGTAAGATTCGCAAATGCTT
GTTTCCATACCTCTAAGGAATTATTGAAAC	AGGGCTTGTTGCAAATCTTCTCATTGCCCGCTACGAC
GTTTCCATACCTCTAAGGAATTATTGAAAC	TGTGTTCGAGATCGTCAACTACCTCACGACGAAGATCTA
GTTTCCATACCTCTAAGGAATTATTGAAAC	CTATAGGCATACTATAGTTTGCTATAGGCATACTA
GTTTCCATACCTCTAAGGAATTATTGAAAC	CTGCATAATCTTCTGCGATGTTTCTTGTGTAAAAG
GTTTCCATACCTCTAAGGAATTATTGAAAC	CAGAATCAACTCGAAGACCTTCAGCAAACAACAGC
GTTTCCATACCTCTAAGGAATTATTGAAAC	AGACTAAGTGGGAAAAGCTCGCAGAGGAAGATCCAAC
GTTTCCATACCTCTAAGGAATTATTGAAAC	TCGTCGAGTGGAGCGATGTTGTGTTCAGCATAAGCGA
GTTTCCATACCTCTAAGGAATTATTGAAAC	GTTGTCAACAAGCAAAGCACTCGGTACGAATTTATCCC
GTTTCCATACCTCTAAGGAATTATTGAAAC	CATGGTAGAAGCGGGTAAGTGGACGATAGAAGACG
GTTTCCATACCTCTAAGGAATTATTGAAAC

>NC_010483|4|4|974477-976299|CRT
TTTTTCGTACATTTAAGGAA	GTATTGAAACAGCTTGAGGAGATTTACTCATCACCTGGATATGTTTA
GTTTCCATACCTCTAAGGAA	TTATTGAAACTGTGGTTGCTCCAGTCCTGGCTGCGTAATGAAATTAA
GTTTCCATACCTCTAAGGAA	CTATTGAAACGAGAACGACGATCTCAAAAAGCAACTTGAGGAATATTT
GTTTCCATACCTCTAAGGAA	GTATTGAAACGCAGTCAAGCCAGAGCTCGAGGAGATAGACGTTGTCCT
GTTTCCATACCTCTAAGGAA	GTATTGAAACACCTAGCATTGTGTGTATGAGGATGTAGTGGTTTG
GTTTCCATACCTCTAAGGAA	GTATTGAAACTTCCAATCCCTTTTTGAACATCTCCCAAAGCCATT
GTTTCCATACCTCTAAGGAA	GTATTGAAACCAGTTAGCAAGATCCGACATTTTTGCGATGATGAAGG
GTTTCCATACCTCTAAGGAA	GTATTGAAACTCTTCGCAAGCAGGAATGATACGCTGTTTGTCTGTTT
GTTTCCATACCTCTAAGGAA	GTATTGAAACATGCTGTCGTTGAAGTTTGTTTTTCCTTCGCTGTAGA
GTTTCCATACCTCTAAGGAA	GTATTGAAACCTAAGGTGGGGGTGAAAGGTATGGTGAAGGTGAAGGCT
GTTTCCATACCTCTAAGGAA	GTATTGAAACCCGGTGGGGTCGCTGGGTGTGTCCAGAGGCGCCCT
GTTTCCATACCTCTAAGGAA	GTATTGAAACTTCACATAGCTGCTTGGAATCCTGGCGAATCAAAAGT
GTTTCCATACCTCTAAGGAA	GTATTGAAACGTTGCGAGTAGATGATGATTTTTACGACGATACTAT
GTTTCCATACCTCTAAGGAA	GTATTGAAACCAGCCACAAATGACCATAAAAACTTGGTGCTTGCCG
GTTTCCATACCTCTAAGGAA	GTATTGAAACGCATATTCGGTCTTATGCTGTTTTTCAGAAGTAGAGA
GTTTCCATACCTCTAAGGAA	GTATTGAAACACGTAGATTTAACTTGACATAGGAATTGTCAAATGG
GTTTCCATACCTCTAAGGAA	TTATTGAAACATACCTTCGTAGTTACCCTCACCAGAGACGCCAACGGCTT
GTTTCCATACCTCTAAGGAA	TTATTGAAACCAAGAGAAGTAAGAATAGCTGTAAGATTCGCAAATGCTT
GTTTCCATACCTCTAAGGAA	TTATTGAAACAGGGCTTGTTGCAAATCTTCTCATTGCCCGCTACGAC
GTTTCCATACCTCTAAGGAA	TTATTGAAACTGTGTTCGAGATCGTCAACTACCTCACGACGAAGATCTA
GTTTCCATACCTCTAAGGAA	TTATTGAAACCTATAGGCATACTATAGTTTGCTATAGGCATACTA
GTTTCCATACCTCTAAGGAA	TTATTGAAACCTGCATAATCTTCTGCGATGTTTCTTGTGTAAAAG
GTTTCCATACCTCTAAGGAA	TTATTGAAACCAGAATCAACTCGAAGACCTTCAGCAAACAACAGC
GTTTCCATACCTCTAAGGAA	TTATTGAAACAGACTAAGTGGGAAAAGCTCGCAGAGGAAGATCCAAC
GTTTCCATACCTCTAAGGAA	TTATTGAAACTCGTCGAGTGGAGCGATGTTGTGTTCAGCATAAGCGA
GTTTCCATACCTCTAAGGAA	TTATTGAAACGTTGTCAACAAGCAAAGCACTCGGTACGAATTTATCCC
GTTTCCATACCTCTAAGGAA	TTATTGAAACCATGGTAGAAGCGGGTAAGTGGACGATAGAAGACG
GTTTCCATACCTCTAAGGAA

>NC_010483|4|4|974478-976309|PILER-CR
TTTTCGTACATTTAAGGAAGTATTGAAACA	GCTTGAGGAGATTTACTCATCACCTGGATATGTTTAG
TTTCCATACCTCTAAGGAATTATTGAAACT	GTGGTTGCTCCAGTCCTGGCTGCGTAATGAAATTAAG
TTTCCATACCTCTAAGGAACTATTGAAACG	AGAACGACGATCTCAAAAAGCAACTTGAGGAATATTTG
TTTCCATACCTCTAAGGAAGTATTGAAACG	CAGTCAAGCCAGAGCTCGAGGAGATAGACGTTGTCCTG
TTTCCATACCTCTAAGGAAGTATTGAAACA	CCTAGCATTGTGTGTATGAGGATGTAGTGGTTTGG
TTTCCATACCTCTAAGGAAGTATTGAAACT	TCCAATCCCTTTTTGAACATCTCCCAAAGCCATTG
TTTCCATACCTCTAAGGAAGTATTGAAACC	AGTTAGCAAGATCCGACATTTTTGCGATGATGAAGGG
TTTCCATACCTCTAAGGAAGTATTGAAACT	CTTCGCAAGCAGGAATGATACGCTGTTTGTCTGTTTG
TTTCCATACCTCTAAGGAAGTATTGAAACA	TGCTGTCGTTGAAGTTTGTTTTTCCTTCGCTGTAGAG
TTTCCATACCTCTAAGGAAGTATTGAAACC	TAAGGTGGGGGTGAAAGGTATGGTGAAGGTGAAGGCTG
TTTCCATACCTCTAAGGAAGTATTGAAACC	CGGTGGGGTCGCTGGGTGTGTCCAGAGGCGCCCTG
TTTCCATACCTCTAAGGAAGTATTGAAACT	TCACATAGCTGCTTGGAATCCTGGCGAATCAAAAGTG
TTTCCATACCTCTAAGGAAGTATTGAAACG	TTGCGAGTAGATGATGATTTTTACGACGATACTATG
TTTCCATACCTCTAAGGAAGTATTGAAACC	AGCCACAAATGACCATAAAAACTTGGTGCTTGCCGG
TTTCCATACCTCTAAGGAAGTATTGAAACG	CATATTCGGTCTTATGCTGTTTTTCAGAAGTAGAGAG
TTTCCATACCTCTAAGGAAGTATTGAAACA	CGTAGATTTAACTTGACATAGGAATTGTCAAATGGG
TTTCCATACCTCTAAGGAATTATTGAAACA	TACCTTCGTAGTTACCCTCACCAGAGACGCCAACGGCTTG
TTTCCATACCTCTAAGGAATTATTGAAACC	AAGAGAAGTAAGAATAGCTGTAAGATTCGCAAATGCTTG
TTTCCATACCTCTAAGGAATTATTGAAACA	GGGCTTGTTGCAAATCTTCTCATTGCCCGCTACGACG
TTTCCATACCTCTAAGGAATTATTGAAACT	GTGTTCGAGATCGTCAACTACCTCACGACGAAGATCTAG
TTTCCATACCTCTAAGGAATTATTGAAACC	TATAGGCATACTATAGTTTGCTATAGGCATACTAG
TTTCCATACCTCTAAGGAATTATTGAAACC	TGCATAATCTTCTGCGATGTTTCTTGTGTAAAAGG
TTTCCATACCTCTAAGGAATTATTGAAACC	AGAATCAACTCGAAGACCTTCAGCAAACAACAGCG
TTTCCATACCTCTAAGGAATTATTGAAACA	GACTAAGTGGGAAAAGCTCGCAGAGGAAGATCCAACG
TTTCCATACCTCTAAGGAATTATTGAAACT	CGTCGAGTGGAGCGATGTTGTGTTCAGCATAAGCGAG
TTTCCATACCTCTAAGGAATTATTGAAACG	TTGTCAACAAGCAAAGCACTCGGTACGAATTTATCCCG
TTTCCATACCTCTAAGGAATTATTGAAACC	ATGGTAGAAGCGGGTAAGTGGACGATAGAAGACGG
TTTCCATACCTCTAAGGAATTATTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010483.1|WP_012310829.1|971441_972479_+|dipeptide-epimerase	unknown	unknown	gnl|CDD|239435
NC_010483.1|WP_004082425.1|981568_981769_-|cold-shock-protein	unknown	unknown	gnl|CDD|224197
NC_010483.1|WP_012310833.1|980077_981472_-|glutamate--tRNA-ligase	unknown	unknown	gnl|CDD|234953
NC_010483.1|WP_012310834.1|982002_983169_+|type-III-PLP-dependent-enzyme	unknown	unknown	gnl|CDD|143482
NC_010483.1|WP_012310832.1|979278_980043_-|metallophosphoesterase-family-protein	unknown	unknown	gnl|CDD|378975
NC_010483.1|WP_012310830.1|972475_974428_+|IGHMBP2-family-helicase	unknown	unknown	gnl|CDD|273041
NC_010483.1|WP_011943485.1|969413_970088_-|cyclase-family-protein	unknown	unknown	gnl|CDD|224790
NC_010483.1|WP_004082447.1|967129_968953_+|NADH-quinone-oxidoreductase-subunit-NuoF	unknown	unknown	gnl|CDD|224806
NC_010483.1|WP_004082421.1|983864_984680_-|septum-site-determining-protein-MinD	unknown	unknown	gnl|CDD|131023
NC_010483.1|WP_012310835.1|983170_983569_-|YjbQ-family-protein	unknown	unknown	gnl|CDD|376651
NC_010483.1|WP_004082453.1|964428_965265_-|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl|CDD|214599
NC_010483.1|WP_011943489.1|976944_978471_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	unknown	unknown	gnl|CDD|236566
NC_010483.1|WP_012310836.1|984779_987164_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|379314
NC_010483.1|WP_012310828.1|970121_971438_+|transglutaminase-domain-containing-protein	unknown	unknown	gnl|CDD|376628
NC_010483.1|WP_004082449.1|966239_966728_+|NAD(P)H-dependent-oxidoreductase-subunit-E	unknown	unknown	gnl|CDD|224817
NC_010483.1|WP_012310827.1|968949_969378_+|DUF2202-domain-containing-protein	unknown	unknown	gnl|CDD|224548
NC_010483.1|WP_004082422.1|983584_983860_-|hypothetical-protein	unknown	unknown	gnl|CDD|223920
NC_010483.1|WP_011943483.1|965274_966036_-|FprA-family-A-type-flavoprotein	unknown	unknown	gnl|CDD|223503
NC_010483.1|WP_004082448.1|966730_967111_+|hypothetical-protein	unknown	unknown	gnl|CDD|225945
NC_010483.1|WP_012310831.1|978545_979295_+|radical-SAM-protein	unknown	unknown	gnl|CDD|224769

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010483.1|WP_012310829.1|971441_972479_+|dipeptide-epimerase	gnl|CDD|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	2.84691e-127
NC_010483.1|WP_004082425.1|981568_981769_-|cold-shock-protein	gnl|CDD|224197	COG1278, CspC, Cold shock proteins [Transcription].	1.68316e-32
NC_010483.1|WP_012310833.1|980077_981472_-|glutamate--tRNA-ligase	gnl|CDD|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_010483.1|WP_012310834.1|982002_983169_+|type-III-PLP-dependent-enzyme	gnl|CDD|143482	cd00622, PLPDE_III_ODC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this subfamily are proteins with homology to ODC but do not possess any catalytic activity, the Antizyme inhibitor (AZI) and ODC-paralogue (ODC-p). AZI binds to the regulatory protein Antizyme with a higher affinity than ODC and prevents ODC degradation. ODC-p is a novel ODC-like protein, present only in mammals, that is specifically exressed in the brain and testes. ODC-p may function as a tissue-specific antizyme inhibitory protein.	3.01059e-175
NC_010483.1|WP_012310832.1|979278_980043_-|metallophosphoesterase-family-protein	gnl|CDD|378975	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain. Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	2.55377e-27
NC_010483.1|WP_012310830.1|972475_974428_+|IGHMBP2-family-helicase	gnl|CDD|273041	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_010483.1|WP_011943485.1|969413_970088_-|cyclase-family-protein	gnl|CDD|224790	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism].	4.61462e-73
NC_010483.1|WP_004082447.1|967129_968953_+|NADH-quinone-oxidoreductase-subunit-NuoF	gnl|CDD|224806	COG1894, NuoF, NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Energy production and conversion].	0
NC_010483.1|WP_004082421.1|983864_984680_-|septum-site-determining-protein-MinD	gnl|CDD|131023	TIGR01968, Septum_site-determining_protein_MinD, septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model. [Cellular processes, Cell division].	2.19095e-148
NC_010483.1|WP_012310835.1|983170_983569_-|YjbQ-family-protein	gnl|CDD|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	3.21722e-72
NC_010483.1|WP_004082453.1|964428_965265_-|methyl-accepting-chemotaxis-protein	gnl|CDD|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.55417e-51
NC_010483.1|WP_011943489.1|976944_978471_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase	gnl|CDD|236566	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed.	0
NC_010483.1|WP_012310836.1|984779_987164_+|AAA-family-ATPase	gnl|CDD|379314	pfam13654, AAA_32, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	0
NC_010483.1|WP_012310828.1|970121_971438_+|transglutaminase-domain-containing-protein	gnl|CDD|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	6.45235e-25
NC_010483.1|WP_004082449.1|966239_966728_+|NAD(P)H-dependent-oxidoreductase-subunit-E	gnl|CDD|224817	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion].	1.62385e-76
NC_010483.1|WP_012310827.1|968949_969378_+|DUF2202-domain-containing-protein	gnl|CDD|224548	COG1633, COG1633, Uncharacterized conserved protein [Function unknown].	1.35607e-25
NC_010483.1|WP_004082422.1|983584_983860_-|hypothetical-protein	gnl|CDD|223920	COG0851, MinE, Septum formation topological specificity factor [Cell division and chromosome partitioning].	0.000615691
NC_010483.1|WP_011943483.1|965274_966036_-|FprA-family-A-type-flavoprotein	gnl|CDD|223503	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion].	2.07326e-77
NC_010483.1|WP_004082448.1|966730_967111_+|hypothetical-protein	gnl|CDD|225945	COG3411, COG3411, Ferredoxin [Energy production and conversion].	2.20196e-22
NC_010483.1|WP_012310831.1|978545_979295_+|radical-SAM-protein	gnl|CDD|224769	COG1856, COG1856, Uncharacterized homolog of biotin synthetase [Function unknown].	2.47214e-126

Protein sequences

>NC_010483.1|WP_012310830.1|972475_974428_+|IGHMBP2-family-helicase
MTVQQFIKKLVRLVELERNAEINAMFDEMKRLSGEEREKKGRAVLGLTGKFIGEELGYFLVRFGRRKKIDTEIGVGDLVLISKGNPLKSDYTGTVVEKGERFITVAVDRLPSWKLKNVRIDLFASDITFRRQIENLMTLSPEGKKALEFLLGKRKPEESFEEEFTPFDEGLNESQREAVSLALGSSDFFLIHGPFGTGKTRTLVEYIRQEVARGKKILVTAESNLAVDNLVERLWGKVSLVRIGHPSRVSSHLKESTLAHQIETSSEYEKVKKMKEELAKLIEKRDSFTKPSPQWRRGLSDKKILEYAEKNWSARGVSKEKIKEMAEWIKLNSQIQDIRDLIERKEEIIANRIVREAQVVLSTNSSAALEIISGIVFDVVVVDEASQATIPSILIPISKGKKFVLAGDHKQLPPTILSEDAKDLSRTLFEELITRYPEKSSLLDTQYRMNELLMAFPSEEFYDGKLKAAEEVRNITLFDLGVEIPNFGKFWDVVLSPKNVLVFIDTKNRSDRFERQRKDSPSRENPLEAQIVKEVVEKLLSMGVKEDWIGIITPYDDQVNLIRELIEAKVEVHSVDGFQGREKEVIIISFVRSNKNGEIGFLEDLRRLNVSLTRAKRKLIATGDSSTLSVHPTYRRFVEFVKKKGTYVIF
>NC_010483.1|WP_012310829.1|971441_972479_+|dipeptide-epimerase
MSRIVNVKLSLKRYEYEKPFHITGSVSSESRNVEVEIVLESGVKGYGEASPSFRVNGERVEALLAIENAVREMITGIDVRNYARIFEITDRLFGFPSLKAAVQFATLDALSQELGTQVCYLLGGKRDEIETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIVDANMGYTPKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYVNIKLMKSGISDALAIVKIAESSGLKLMIGCMGESSLGINQSVHFALGTGAFEFHDLDSHLMLKEEVFRGKFIQDGPRMRVKDQ
>NC_010483.1|WP_012310828.1|970121_971438_+|transglutaminase-domain-containing-protein
MEFLIYSLPEEVLREEMLGNFSVALKLIDDFLKKDLPLLQRERLIYEKERIERLLEDYPFTEKEAMEKMREMFEGFSKGEFQYLMNEGVLDYIVVEGEKRFERRFFHNLAFVRSEYRERLRKDERSEKARRILHERLERLIKGEDPKRYRIRARITLKLKETSSKHRVWLPFPKEGLQIESVKLLRTSHKSYYISPNDVPQRTIYFEGEDSTFFVEFEYIVREWVNHVDPERVSEKVVGFEEFLKEEPPHIVFTPKLRWLTQTVVGSEVNPYLKAKRIYDWITLNVRYSYVKPYALYENITDFVVNNLKGDCGFQALLFITMCRIAGVPARWQSGWYINPIFGSPHDWALFYVEPYGWLPADLSFGGARRDNESFRSFYFGNLDGFRMVANDGFMKDFDPKTRFVRSDPTDNQVGEAESEEKRLPFESTIEVISFEEV
>NC_010483.1|WP_011943485.1|969413_970088_-|cyclase-family-protein
MFIELSYPIEERMLTYPDNPPDYFEPKSRIEQGDAANTMMIHHFSHTGTHVDAPYHFCEEGWTLDQIPLEYFIFEKPLLVDREKKPMELFTIEDIEELDLNGVDLLMFRSGFAKLRRTDPATYRYMFPGISKELARFLRESVPSLKAVMLDFLSADPIVLGEKENYPAHRWLLSKKFSSKRPIIIFEDVNLEPVAGKKIKRVIALPLRFKGLDGGPVSVLAEVE
>NC_010483.1|WP_012310827.1|968949_969378_+|DUF2202-domain-containing-protein
MIGPRDLLNIALRIESTGYSYYKNLAEKTEGETKALFERLAEQERDHSRKFKEILEKYEQDLNPSDEVLGYLEALAEISIFPKLEETPPDDLREAVRRAIEVEKDSIVFYSEILSYVPEKEPVQTIIDEEKKHLRDLLRLEV
>NC_010483.1|WP_004082447.1|967129_968953_+|NADH-quinone-oxidoreductase-subunit-NuoF
MPLTTNTILICAGGACISAGEKSVKDAFEEELRKYGLDEVVRVIETGCMGACTLGPIAVIYPESVFYQKLTPDAAREIVEEHILKGRIVEKYLYKASEGKPVPRVHEEVPFFKKQVRIVTRNLGVIDPTKIEEYIARDGYFALAKALQMKPEDVIKEIKDSGLRGRGGAGFPTGLKWELAARQKAEKKFVVCNADEGDPGAFMDRSVLEGDPHAVIEGMAIAAYAIGAQKGFVYVRAEYPLAIERLNIALNQAREYGFLGGNIMGTDFSFDIEIRIGAGAFVCGEETALMASIEGERGQPKVKPPYPVEKGLWGYPTVINNVETLANVPWIIRNGAKEFRKYGTENSPGTKVFALAGKVKNTGLVEVPMGITLRELIYEIGGGIAGDKKLKAIQTGGPSGGCIPAEYVDTPVDFESLQKLGAIMGSGGMIVMDEDDCMVDVARFFLEFTVEESCGKCTPCREGTKKMLEILEKITSGEGTEEDIEELEKLAHVVKDTSLCGLGQTAPNPVLSTLRYFRDEYLAHVKEKRCPSKKCKALISYVIDPEKCVGCTACARVCPVQCISGQVRQPHVIDQAECVRCGSCIEVCRFGAISKVTPALPVEEAVE
>NC_010483.1|WP_004082448.1|966730_967111_+|hypothetical-protein
MAKVKSLEELMKIKEQALKDLQLRGETGKRGKITVAMGTCGIAAGAKETLKAIVEALNEYNINDIAVVQSGCMGLCEVEPTVEVRLEGQEPVIYGRVTPENAKRIVKMHILEGRVVEDLVVKRGEA
>NC_010483.1|WP_004082449.1|966239_966728_+|NAD(P)H-dependent-oxidoreductase-subunit-E
MVKSKEELFKELENFIEENGYEGKKDALIQVLHKAQELFGYLPADVLEYISDKLDVPLSKVYGVVTFYNFFSTKPKGKHQIKVCLGTACYVKGADRIFERFLEELKVNPDEPTSDGMFSVHGVRCLGACSMAPVVMVDEDDFYGRVTPDMVPQIISKYKREG
>NC_010483.1|WP_011943483.1|965274_966036_-|FprA-family-A-type-flavoprotein
MFENEILFDNGQHKFMFLGWEEKEEEIVQTNQYLILDGNEGILLDPGGAHVFPRVMSNVAEVVDLSSIRHIFYTHQDPDVTSGILLWLSICENAKIYISSLWVRFLPHFGIYDQKRIVPISDKGTKIKLLSGNELEILPAHFLHSTGNFVLYDPVAKILFSGDIGAAVFEKGKRYRYVDDFERHLPLMEAFHKRYMSSNTACKKWVDMVSKRKIDMIAPQHGAVFRGESVKKFLEWFRNLKCGVDLIDNLYSL
>NC_010483.1|WP_004082453.1|964428_965265_-|methyl-accepting-chemotaxis-protein
MREREIVDKLTSAFFAENTIISFTSQLDEALTRKLRRMQRRIEEVKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGETLENIRSIEKLIQNIMRIARETNILALNATIEAARAGEAGKGFMIVANEVQNLSNETNEVTKQIVEKAREILESSQRSLENLEFMANLFETVGKTLQNMVRFMENNVKLLQEVRNSLDTSKESLSEKSAEIDSATKVLEETAGGFTTINRVINSVITAQRKLKDLKI
>NC_010483.1|WP_011943489.1|976944_978471_-|bifunctional-UDP-sugar-hydrolase/5'-nucleotidase
MRKFLVILLALLITALLLGARLTILHVNDTHGHAWAFDEYRNPGIGGLAAIATIVEEVKREVESQGGYVIFLHAGDLNTGVPESDLQDAIPDIVGFNMIGLKAMAVGNHEFDNPREVLEKQMKFADFPFLSANIVKEDGEPFFNPYIVEDLGELKIAIIGFTTEETEILEPLYLEGLKFENALKVAQKIAPELKKQADVVIALAHLDWGEPKKEDITTTHQLAGVEGIDVVIAGHSHVLGSDVVDGKIIASAGEYGKYVGRLDLDIEDGKIVAWHWEAIPVNLKVYENEKYRYLGKPYLENRYVAKALEYFKKVGNEKLDTVIGETKIYLDGEREHVRSKSTNLANLIVDAMRWKVGADIAFTNGGGIRASIKPGKITVRDILTVLPFGNTLYVLELTGEQIMKVLEYAATIPEGKGAFLQVSGLTWKSKDGKVVEVLVNGEPLDPEKKYKVVTNNYMAGGGDGYVMFKEWDGYDTGYLMSDAVIEYIQNVLNGKIEEYDDSQRYVRE
>NC_010483.1|WP_012310831.1|978545_979295_+|radical-SAM-protein
MTVDPSHTIPVSVTGTFCSLNCPHCGAHYLKHMISVDEIPAFVKKGYRNFLISGGMLPDGSIPFEKYYERLKELKESHGLLYNFHVGFQKSKVAKELADVVSMDFFGDETVLKSIYGLALTPQEILDIAHFYENVVFHITVGITGGKITHEEKALEILSQETDTVVLNVFIPTPGTKFGKSFPPDLQEVVKLFEKAKKLFKRVILGCMQPRGEYRKKLQSELKDLVDVITKPVGGTGEFKGCCAFIGRG
>NC_010483.1|WP_012310832.1|979278_980043_-|metallophosphoesterase-family-protein
MRLAFFGDVHGNFEALKAVLEDMENKGVDEVFCLGDLVGYGPDPEAVVQTIMEKNIKTIMGNYDDAVGYSKESCGCSYAPGRETEVGDISLKWSIENTSEKTREFLRNLPKKLSFEVEGVKFLLVHGSPLNELLEYVKPNTPPDRLKKIVESVEENVVVNGHTHLPMVKWVMGKLVLNPGSAGRPKDGDPRASYMIVDVENGTVSFEIVRVRYDVKTTVEKIARNGLPVELATVLALGQTFDMGPGKVTFTLGR
>NC_010483.1|WP_012310833.1|980077_981472_-|glutamate--tRNA-ligase
MVRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDTDTERSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSERLEIYREYAKKLVEDKRAYYVVYDKEDPSKELFTTYDYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHIPLILGPDRTPLSKRHGATSVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFDPKDISNKGVIFDYQKLEWVNGKHMRRIDLEDLKREFIEWAKYVGREIPSLNESYFTEALRICREKVNTLSQLYDIMYPFMSDDYEYEKDYVEKFLKREEAERVLEEAKKAFKDLNSWNMEEIEKTLRDLSEKGLASKKVVFQLIRGAVTGKLVTPGLFETIEVLGKERTLKRLERTLQFLKKT
>NC_010483.1|WP_004082425.1|981568_981769_-|cold-shock-protein
MRGTVKWFDSKKGYGFITMENGEDIFVHWSAIQMDGFKTLRENETVEFEVQKGTKGPQAVNVRPVR
>NC_010483.1|WP_012310834.1|982002_983169_+|type-III-PLP-dependent-enzyme
MMEYWIRRALEVVKTPFLLFDLSVVEKKYLEMKAALKKADIYYAVKANSHPRIISLLARLGSNFDVASKGEIEKLLALGVDGKRMSFGNTIKREEDIAFAYKNGIRLFAVDSEMEVEKVAINAPGSFVFVRVETDGADADWPLSRKFGTNPEHALQLLSYASKMKLIPAGLSFHVGSQNLNPESWKKAIEIAGRVFKKAMRSGLNLFLLNVGGGFPVQHTKPIPSMEEIGKAIEEAIDENLWFVHNLRVIAEPGRYMVGEAGWLVTKVLLKSERSGEKWVYIDAGVFHGLAETIQNFEYEVRVLGKEREELEEYHLAGPTCDSVDVIYDRILLPKSITLNDLVCFINAGAYTVEYNTRFNGIEPPKMVFIEELTEISIEEKIKTRVLD
>NC_010483.1|WP_012310835.1|983170_983569_-|YjbQ-family-protein
MLKRLTVRTSSRTQFVDITSEVVKVIEESKVRNGICVVFVPHTTAGVTINENADPSVRQDIMNTLNKLVPPSAGYTHLEGNADSHIKASLVGSSVTLIIENGRPLLGTWQGIYFCEFDGPRTRSVYVKVVEG
>NC_010483.1|WP_004082422.1|983584_983860_-|hypothetical-protein
MKFLFWEFGKKNKSRETAKKRLEQIVGTTKRRQMNITEIIPKEILDKNSDKIKERIASWLSETFNVEKEKIKIDLEEREGHVVIITNVFFK
>NC_010483.1|WP_004082421.1|983864_984680_-|septum-site-determining-protein-MinD
MGNVIVVTSGKGGVGKTTITANLGCALAKLGEKVCLIDADIGLKNLDIVLGLENRIVYTMIDVVNGKVSPQEALVKHKMLKNLYLLPASQIATKEMISPNDMKAIVKELIPHFDYIIIDSPAGIERGFRNAVAPAERVLVVTTPELPAISDADRVIGLLENFGFSDEKINVIINRFKPHMVKKGEMLTTDDIKHTLSLEIIAVIPDSEDIIVASNTGIPVSLNGNSRISKNFENLARRIRGEGVPLENDFVTVSKGLIDTLKDFFSKLKRG
>NC_010483.1|WP_012310836.1|984779_987164_+|AAA-family-ATPase
MIRKLRPDEINSFDLDFLNFQTTEEVPPNEGFIGQKRAKEAIETGIRIREKGYNIFVTGMTGTGRRTFVQMMLQDVAKKLPVPNDWGYVYNFENPYEPKAISFKAGQGRRFKKRLEDLINEVVEALNKSFESEEFARKISEMEEKYALMRKQLWESLEAKASELGFVVQLTPAGVVMLPVVDGKPLPPEAVNALPDQAIREIEERQMKLKHLVDGTLYRIRKLDIEFRKSLEEFHKRTALFAIDPLFVEVESEFENEGVKEFLESVKKDIVENLLDFLRMDARERKEIYMRKYSLNLIVDNSDLTGAPVIYETNPTYSNLFGKIEYYVRGGFLHTDFSMIRPGSVHKANGGFLIVEAERLLSQPYAWYNLKRVLMESQISVENLEHTLGVSNTITLKPEKIPLDLKVVIIGTPYLYELLYELDPDFRKLFRIKAEFDWEIPRNELNVQKYVSFISSVCREKNLPHFDRGAVKRVIWYAMRNARNSTKLSAVFGDIVNLIVESGELARLEGAEVTTSDHVLKAYQAMENRRNLLEEKYDEMIKTFDLMIEVTGSRVGQINGLTVLDLGDHSFGVPVKITAKVYLGRPGVVDIQREADLSGKIHSKAVLILEGFLGSRYAQDFPLSVSASISFEQVYSEVEGDSASLAEALALLSAISKVPIKQGIAVTGSINQHGEVQPVGGIVEKVEGFYRACKTRGFDGEQGVIIPKANAKNLVLKDEIVQAMKKGLFHIWTVETIDDAIEIVMGMKAGKVTKTGKFERNSVNYLVYRELKKMKKLLDGVSEEGKKKKKKGKK

Crispr_ID: NC_010483_5

• CRISPR_ID: NC_010483_5
• CRISPR_location: 1062015-1064158
• CRISPR_type: TypeIII
• Repeat_type: III-A
• Spacer_info: 32 spacers
• Cas_protein_info: csx22,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,cmr1gr7,cmr3gr5

Consensus repeat of NC_010483_5

Consensus_repeat	Method
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATANTTCCTTAGAGGTATGGAAAC	CRT

spacers of NC_010483_5

>5.1|1062045|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TGGCTTACTATAGGCATACTATAGACGGCTTAGGTT
>5.2|1062111|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
ATTTCGTAGCAGTCTGCGAGCACGTCGTTCCAATAGA
>5.3|1062178|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CCGCGCCCTGTTGTCTAAATATGTTGTCGACTACAG
>5.4|1062244|40|NC_010483|PILER-CR,CRISPRCasFinder,CRT
AGGATAGCACCTTGACCGCTTTCTTGCCGTCGAAACTTGC
>5.5|1062314|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CCGTTTGATGTACAAACTTTTCCTCAACTCTTTGT
>5.6|1062379|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TGCCGGTAAGAGTCCCATCCTACATCATGCAACCT
>5.7|1062444|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
AAGCCGTATGCGTAGGAGAGGGCGAATATTTCCTTG
>5.8|1062510|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TCGTACGTGTTGCATACACTGTTCTATGTACTTTCAA
>5.9|1062577|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CATGTGATGCGATCGCAGTAAACGAATGAAACGAAT
>5.10|1062643|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TAGATTTCACAGTCACAGCATCAAATAATGTAGCAA
>5.11|1062709|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
AATTGAACCTTGTTGCAACATCGTTTTCTGCGTTCA
>5.12|1062775|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
ATTTCGAGGATAATCCTGAAGAATTCAAAGAAGAAT
>5.13|1062841|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TAGGCTTTCTTGAGATACCATGCACCCATGAAGACA
>5.14|1062907|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CTTCAATCGTACCATTTTGCCCAGCCCATGTCAAGT
>5.15|1062973|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CGCTTGAGTTCGGCGGCAAACCCTATAGGCATTCAGT
>5.16|1063040|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TCAGGGCTGGCAGTCGTTCCCAGTGTCGTCGCATATC
>5.17|1063107|38|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TCCGCTAATTGACTGCCCCACCACCCCATTTGAATACC
>5.18|1063175|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
>5.19|1063242|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
>5.20|1063309|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
>5.21|1063376|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
>5.22|1063443|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TTATTGATGAGAAAAGCTTCACACCGGTGGCAAATA
>5.23|1063509|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CGTAGTTGCCTTTTTCAGTTGTGATTATCTTCCCGC
>5.24|1063575|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TCCGCTAAACTCCTGAAATACTCGTCAGCGATATCG
>5.25|1063641|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CATCAGACTTGCCGGCTACATTGCAGGCTACAACTA
>5.26|1063707|41|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CAGGAATGCCCTTGAATAAGCCAAAAGCGGGCGAGGCACGT
>5.27|1063778|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CGGTCTGACTCAAAGGTAACAACTATTTTCCCATC
>5.28|1063843|38|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CTACACTCGGCTGATGTGTGTGCGCGGTGAGGTAGATA
>5.29|1063911|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CTACAAAGCTTGTTGCGAAGGGTTTTTCTTCAATT
>5.30|1063976|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
ATCCAAACCGGATACTTCCAGAGATCTTTCACAGC
>5.31|1064041|35|NC_010483|CRISPRCasFinder,CRT
AAATAATCGTGCTGATAATCCGTCGGTACGAAATC
>5.32|1064106|23|NC_010483|CRT
TCCGGTTTCAATAATTCCTTACT

CRISPR arrays and Neighbor proteins around NC_010483_5

CRISPR arrays

The CRISPR arrays of NC_010483_5

>merge|NC_010483|5|1062015-1064158|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATAATTCCTTAGAGGTATGGAAACTGGCTTACTATAGGCATACTATAGACGGCTTAGGTTGTTTCAATAATTCCTTAGAGGTATGGAAACATTTCGTAGCAGTCTGCGAGCACGTCGTTCCAATAGAGTTTCAATAATTCCTTAGAGGTATGGAAACCCGCGCCCTGTTGTCTAAATATGTTGTCGACTACAGGTTTCAATAATTCCTTAGAGGTATGGAAACAGGATAGCACCTTGACCGCTTTCTTGCCGTCGAAACTTGCGTTTCAATAATTCCTTAGAGGTATGGAAACCCGTTTGATGTACAAACTTTTCCTCAACTCTTTGTGTTTCAATAATTCCTTAGAGGTATGGAAACTGCCGGTAAGAGTCCCATCCTACATCATGCAACCTGTTTCAATAATTCCTTAGAGGTATGGAAACAAGCCGTATGCGTAGGAGAGGGCGAATATTTCCTTGGTTTCAATAATTCCTTAGAGGTATGGAAACTCGTACGTGTTGCATACACTGTTCTATGTACTTTCAAGTTTCAATAATTCCTTAGAGGTATGGAAACCATGTGATGCGATCGCAGTAAACGAATGAAACGAATGTTTCAATAATTCCTTAGAGGTATGGAAACTAGATTTCACAGTCACAGCATCAAATAATGTAGCAAGTTTCAATAATTCCTTAGAGGTATGGAAACAATTGAACCTTGTTGCAACATCGTTTTCTGCGTTCAGTTTCAATAATTCCTTAGAGGTATGGAAACATTTCGAGGATAATCCTGAAGAATTCAAAGAAGAATGTTTCAATAATTCCTTAGAGGTATGGAAACTAGGCTTTCTTGAGATACCATGCACCCATGAAGACAGTTTCAATAATTCCTTAGAGGTATGGAAACCTTCAATCGTACCATTTTGCCCAGCCCATGTCAAGTGTTTCAATAGTTCCTTAGAGGTATGGAAACCGCTTGAGTTCGGCGGCAAACCCTATAGGCATTCAGTGTTTCAATAGTTCCTTAGAGGTATGGAAACTCAGGGCTGGCAGTCGTTCCCAGTGTCGTCGCATATCGTTTCAATAGTTCCTTAGAGGTATGGAAACTCCGCTAATTGACTGCCCCACCACCCCATTTGAATACCGTTTCAATAGTTCCTTAGAGGTATGGAAACTGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACAGTTTCAATAGTTCCTTAGAGGTATGGAAACTGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACAGTTTCAATAGTTCCTTAGAGGTATGGAAACTGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACAGTTTCAATAGTTCCTTAGAGGTATGGAAACTGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACAGTTTCAATAGTTCCTTAGAGGTATGGAAACTTATTGATGAGAAAAGCTTCACACCGGTGGCAAATAGTTTCAATAGTTCCTTAGAGGTATGGAAACCGTAGTTGCCTTTTTCAGTTGTGATTATCTTCCCGCGTTTCAATAGTTCCTTAGAGGTATGGAAACTCCGCTAAACTCCTGAAATACTCGTCAGCGATATCGGTTTCAATAGTTCCTTAGAGGTATGGAAACCATCAGACTTGCCGGCTACATTGCAGGCTACAACTAGTTTCAATAGTTCCTTAGAGGTATGGAAACCAGGAATGCCCTTGAATAAGCCAAAAGCGGGCGAGGCACGTGTTTCAATAGTTCCTTAGAGGTATGGAAACCGGTCTGACTCAAAGGTAACAACTATTTTCCCATCGTTTCAATAGTTCCTTAGAGGTATGGAAACCTACACTCGGCTGATGTGTGTGCGCGGTGAGGTAGATAGTTTCAATAGTTCCTTAGAGGTATGGAAACCTACAAAGCTTGTTGCGAAGGGTTTTTCTTCAATTGTTTCAATAGTTCCTTAGAGGTATGGAAACATCCAAACCGGATACTTCCAGAGATCTTTCACAGCGTTTCAATAATTCCTTAGAGGTATGGAAACAAATAATCGTGCTGATAATCCGTCGGTACGAAATCGTTTCAATAGTTCCTTAGAGGTATGGAAGCTCCGGTTTCAATAATTCCTTACTGTTTCAATTTTTCCTTTCAGGTGCAATGTC

>NC_010483|5|5|1062015-1064040|PILER-CR
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TGGCTTACTATAGGCATACTATAGACGGCTTAGGTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTTCGTAGCAGTCTGCGAGCACGTCGTTCCAATAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGCGCCCTGTTGTCTAAATATGTTGTCGACTACAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGGATAGCACCTTGACCGCTTTCTTGCCGTCGAAACTTGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGTTTGATGTACAAACTTTTCCTCAACTCTTTGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TGCCGGTAAGAGTCCCATCCTACATCATGCAACCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGCCGTATGCGTAGGAGAGGGCGAATATTTCCTTG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCGTACGTGTTGCATACACTGTTCTATGTACTTTCAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CATGTGATGCGATCGCAGTAAACGAATGAAACGAAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGATTTCACAGTCACAGCATCAAATAATGTAGCAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATTGAACCTTGTTGCAACATCGTTTTCTGCGTTCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTTCGAGGATAATCCTGAAGAATTCAAAGAAGAAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGGCTTTCTTGAGATACCATGCACCCATGAAGACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTTCAATCGTACCATTTTGCCCAGCCCATGTCAAGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGCTTGAGTTCGGCGGCAAACCCTATAGGCATTCAGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCAGGGCTGGCAGTCGTTCCCAGTGTCGTCGCATATC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCCGCTAATTGACTGCCCCACCACCCCATTTGAATACC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTATTGATGAGAAAAGCTTCACACCGGTGGCAAATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGTAGTTGCCTTTTTCAGTTGTGATTATCTTCCCGC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCCGCTAAACTCCTGAAATACTCGTCAGCGATATCG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CATCAGACTTGCCGGCTACATTGCAGGCTACAACTA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CAGGAATGCCCTTGAATAAGCCAAAAGCGGGCGAGGCACGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGGTCTGACTCAAAGGTAACAACTATTTTCCCATC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CTACACTCGGCTGATGTGTGTGCGCGGTGAGGTAGATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CTACAAAGCTTGTTGCGAAGGGTTTTTCTTCAATT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATCCAAACCGGATACTTCCAGAGATCTTTCACAGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC

>NC_010483|5|5|1062015-1064105|CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TGGCTTACTATAGGCATACTATAGACGGCTTAGGTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTTCGTAGCAGTCTGCGAGCACGTCGTTCCAATAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGCGCCCTGTTGTCTAAATATGTTGTCGACTACAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGGATAGCACCTTGACCGCTTTCTTGCCGTCGAAACTTGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGTTTGATGTACAAACTTTTCCTCAACTCTTTGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TGCCGGTAAGAGTCCCATCCTACATCATGCAACCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGCCGTATGCGTAGGAGAGGGCGAATATTTCCTTG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCGTACGTGTTGCATACACTGTTCTATGTACTTTCAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CATGTGATGCGATCGCAGTAAACGAATGAAACGAAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGATTTCACAGTCACAGCATCAAATAATGTAGCAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATTGAACCTTGTTGCAACATCGTTTTCTGCGTTCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTTCGAGGATAATCCTGAAGAATTCAAAGAAGAAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGGCTTTCTTGAGATACCATGCACCCATGAAGACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTTCAATCGTACCATTTTGCCCAGCCCATGTCAAGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGCTTGAGTTCGGCGGCAAACCCTATAGGCATTCAGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCAGGGCTGGCAGTCGTTCCCAGTGTCGTCGCATATC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCCGCTAATTGACTGCCCCACCACCCCATTTGAATACC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTATTGATGAGAAAAGCTTCACACCGGTGGCAAATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGTAGTTGCCTTTTTCAGTTGTGATTATCTTCCCGC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCCGCTAAACTCCTGAAATACTCGTCAGCGATATCG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CATCAGACTTGCCGGCTACATTGCAGGCTACAACTA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CAGGAATGCCCTTGAATAAGCCAAAAGCGGGCGAGGCACGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGGTCTGACTCAAAGGTAACAACTATTTTCCCATC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CTACACTCGGCTGATGTGTGTGCGCGGTGAGGTAGATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CTACAAAGCTTGTTGCGAAGGGTTTTTCTTCAATT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATCCAAACCGGATACTTCCAGAGATCTTTCACAGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAATAATCGTGCTGATAATCCGTCGGTACGAAATC
GTTTCAATAGTTCCTTAGAGGTATGGAAGC

>NC_010483|5|5|1062015-1064158|CRT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TGGCTTACTATAGGCATACTATAGACGGCTTAGGTT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTTCGTAGCAGTCTGCGAGCACGTCGTTCCAATAGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGCGCCCTGTTGTCTAAATATGTTGTCGACTACAG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AGGATAGCACCTTGACCGCTTTCTTGCCGTCGAAACTTGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CCGTTTGATGTACAAACTTTTCCTCAACTCTTTGT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TGCCGGTAAGAGTCCCATCCTACATCATGCAACCT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAGCCGTATGCGTAGGAGAGGGCGAATATTTCCTTG
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TCGTACGTGTTGCATACACTGTTCTATGTACTTTCAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CATGTGATGCGATCGCAGTAAACGAATGAAACGAAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGATTTCACAGTCACAGCATCAAATAATGTAGCAA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AATTGAACCTTGTTGCAACATCGTTTTCTGCGTTCA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	ATTTCGAGGATAATCCTGAAGAATTCAAAGAAGAAT
GTTTCAATAATTCCTTAGAGGTATGGAAAC	TAGGCTTTCTTGAGATACCATGCACCCATGAAGACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CTTCAATCGTACCATTTTGCCCAGCCCATGTCAAGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGCTTGAGTTCGGCGGCAAACCCTATAGGCATTCAGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCAGGGCTGGCAGTCGTTCCCAGTGTCGTCGCATATC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCCGCTAATTGACTGCCCCACCACCCCATTTGAATACC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TGAAACCAAAAAACCATTTTATGTGTGAAGAAGAACA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TTATTGATGAGAAAAGCTTCACACCGGTGGCAAATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGTAGTTGCCTTTTTCAGTTGTGATTATCTTCCCGC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	TCCGCTAAACTCCTGAAATACTCGTCAGCGATATCG
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CATCAGACTTGCCGGCTACATTGCAGGCTACAACTA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CAGGAATGCCCTTGAATAAGCCAAAAGCGGGCGAGGCACGT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CGGTCTGACTCAAAGGTAACAACTATTTTCCCATC
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CTACACTCGGCTGATGTGTGTGCGCGGTGAGGTAGATA
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	CTACAAAGCTTGTTGCGAAGGGTTTTTCTTCAATT
GTTTCAATAGTTCCTTAGAGGTATGGAAAC	ATCCAAACCGGATACTTCCAGAGATCTTTCACAGC
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAATAATCGTGCTGATAATCCGTCGGTACGAAATC
GTTTCAATAGTTCCTTAGAGGTATGGAAGC	TCCGGTTTCAATAATTCCTTACT
GTTTCAATTTTTCCTTTCAGGTGCAATGTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010483.1|WP_012310885.1|1069556_1070036_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NC_010483.1|WP_011943631.1|1061029_1061380_-|J-domain-containing-protein	unknown	unknown	gnl|CDD|197617
NC_010483.1|WP_012310880.1|1058084_1059224_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl|CDD|224251
NC_010483.1|WP_011943632.1|1060568_1061039_-|hypothetical-protein	unknown	unknown	unknown
NC_010483.1|WP_012310889.1|1072575_1075014_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	gnl|CDD|224272
NC_010483.1|WP_011943633.1|1059753_1060569_-|hypothetical-protein	unknown	unknown	unknown
NC_010483.1|WP_012310876.1|1052198_1053845_+|CRISPR-associated-DxTHG-motif-protein	csx1	cd09671_csx1_CAS-III	gnl|CDD|187802
NC_010483.1|WP_012310886.1|1070045_1071005_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl|CDD|187853
NC_010483.1|WP_193325876.1|1057236_1058088_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl|CDD|273866
NC_010483.1|WP_012310890.1|1075010_1076003_+|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	COG1769_cmr3gr5_CAS-III-B	gnl|CDD|224683
NC_010483.1|WP_012310883.1|1066741_1067404_+|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl|CDD|131641
NC_010483.1|WP_012310878.1|1056033_1056456_+|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	COG1421_csm2gr11_CAS-III-A	gnl|CDD|224339
NC_010483.1|WP_012310887.1|1071018_1071282_+|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|187856
NC_010483.1|WP_012310879.1|1056469_1057213_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|187815
NC_010483.1|WP_011943634.1|1059196_1059772_+|hypothetical-protein	csx22	mkCas0064_csx22_CAS-III-A	unknown
NC_010483.1|WP_012310877.1|1053865_1056019_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	COG1353_cas10_CAS-III	gnl|CDD|274209
NC_010483.1|WP_029682943.1|1071265_1072573_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	gnl|CDD|224286
NC_010483.1|WP_012310881.1|1064227_1065865_+|TIGR02556-family-CRISPR-associated-protein	cas8b1	cd09672_cas8b1_CAS-I-B	gnl|CDD|274199
NC_010483.1|WP_012310882.1|1065839_1066739_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	gnl|CDD|274217
NC_010483.1|WP_012310884.1|1067394_1069560_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010483.1|WP_012310885.1|1069556_1070036_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	2.2e-44	146.2	0.1
NC_010483.1|WP_012310880.1|1058084_1059224_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	COG1332_csm5gr7_CAS-III-A	1.6e-106	351.8	6.0
NC_010483.1|WP_193325876.1|1057236_1058088_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	2.6e-88	291.0	1.3
NC_010483.1|WP_012310876.1|1052198_1053845_+|CRISPR-associated-DxTHG-motif-protein	csx1	cd09671_csx1_CAS-III	2.1e-91	301.5	7.9
NC_010483.1|WP_012310886.1|1070045_1071005_+|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	4.6e-133	438.0	9.7
NC_010483.1|WP_012310889.1|1072575_1075014_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cls000742_cas10_CAS-III	2.9e-207	685.1	11.1
NC_010483.1|WP_012310890.1|1075010_1076003_+|type-III-B-CRISPR-module-associated-protein-Cmr3	cmr3gr5	COG1769_cmr3gr5_CAS-III-B	7.1e-135	443.9	0.1
NC_010483.1|WP_012310882.1|1065839_1066739_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	3.4e-134	441.3	1.0
NC_010483.1|WP_012310878.1|1056033_1056456_+|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	COG1421_csm2gr11_CAS-III-A	1.6e-42	139.9	2.7
NC_010483.1|WP_012310883.1|1066741_1067404_+|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	2.9e-86	283.6	0.1
NC_010483.1|WP_012310887.1|1071018_1071282_+|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	1.1e-29	97.3	1.1
NC_010483.1|WP_012310879.1|1056469_1057213_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	9e-92	301.4	0.2
NC_010483.1|WP_011943634.1|1059196_1059772_+|hypothetical-protein	csx22	mkCas0064_csx22_CAS-III-A	6.4e-133	434.8	0.3
NC_010483.1|WP_012310877.1|1053865_1056019_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	COG1353_cas10_CAS-III	2e-179	593.2	36.7
NC_010483.1|WP_029682943.1|1071265_1072573_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	cmr1gr7	COG1367_cmr1gr7_CAS-III-B	4e-89	294.0	3.0
NC_010483.1|WP_012310881.1|1064227_1065865_+|TIGR02556-family-CRISPR-associated-protein	cas8b1	cd09672_cas8b1_CAS-I-B	3.8e-181	598.2	7.9
NC_010483.1|WP_012310884.1|1067394_1069560_+|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	3.7e-125	413.6	12.3

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010483.1|WP_012310885.1|1069556_1070036_+|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	4.41749e-60
NC_010483.1|WP_011943631.1|1061029_1061380_-|J-domain-containing-protein	gnl|CDD|197617	smart00271, DnaJ, DnaJ molecular chaperone homology domain.	1.15135e-23
NC_010483.1|WP_012310880.1|1058084_1059224_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl|CDD|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.0413e-103
NC_010483.1|WP_193325876.1|1057236_1058088_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl|CDD|273866	TIGR01903, Hypothetical_protein., CRISPR type III-A/MTUBE-associated RAMP protein Csm4. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. Members of this cas gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm4, for CRISPR/cas Subtype Mtube, protein 4.	5.08734e-96
NC_010483.1|WP_012310876.1|1052198_1053845_+|CRISPR-associated-DxTHG-motif-protein	gnl|CDD|187802	cd09671, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	1.23913e-73
NC_010483.1|WP_012310886.1|1070045_1071005_+|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.1553e-165
NC_010483.1|WP_012310889.1|1072575_1075014_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl|CDD|224272	COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense mechanisms].	3.01538e-151
NC_010483.1|WP_012310890.1|1075010_1076003_+|type-III-B-CRISPR-module-associated-protein-Cmr3	gnl|CDD|224683	COG1769, COG1769, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.03604e-140
NC_010483.1|WP_012310882.1|1065839_1066739_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl|CDD|274217	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csh2 protein of the Hmari subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02589, the Csd3 protein of the Dvulg CRISPR subtype.	4.0402e-145
NC_010483.1|WP_012310878.1|1056033_1056456_+|type-III-A-CRISPR-associated-protein-Csm2	gnl|CDD|224339	COG1421, COG1421, CRISPR system related protein [Defense mechanisms].	2.53296e-33
NC_010483.1|WP_012310883.1|1066741_1067404_+|type-I-B-CRISPR-associated-protein-Cas5	gnl|CDD|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	5.97916e-91
NC_010483.1|WP_012310887.1|1071018_1071282_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.76585e-29
NC_010483.1|WP_012310879.1|1056469_1057213_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl|CDD|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	6.0964e-112
NC_010483.1|WP_029682943.1|1071265_1072573_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl|CDD|224286	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	4.47681e-71
NC_010483.1|WP_012310877.1|1053865_1056019_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl|CDD|274209	TIGR02578, CRISPR-associated_protein_Cas10/Csm1, CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE. The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.	0
NC_010483.1|WP_012310881.1|1064227_1065865_+|TIGR02556-family-CRISPR-associated-protein	gnl|CDD|274199	TIGR02556, hypothetical_protein_MM_0564, CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.	0
NC_010483.1|WP_012310884.1|1067394_1069560_+|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.66087e-117

Protein sequences

>NC_010483.1|WP_011943631.1|1061029_1061380_-|J-domain-containing-protein
MNPYEVLGVPPGASKEEIEKAYRELVKKYHPDRYKDHPLRDLAEEKMKQINEAYAVLMSGEFSETPRQENVFNTFYSMGYRYRGNDDCRDILACLGCAWCTDTCCEACGGDCIPCM
>NC_010483.1|WP_011943632.1|1060568_1061039_-|hypothetical-protein
MHVKKVAYGGLISALVVLLLYIGNFTKSKIFFAALSSVFTGVLVELFGVGSVPIIIATNVLVFLLVPNPGYASLFFVLSFYGFLRKKPILIRFLYLNASTLLLVLFASKFFNAELPDVSFFLYALGFLGVQVAFFVYDYLYNRILQELLRIIRGKN
>NC_010483.1|WP_011943633.1|1059753_1060569_-|hypothetical-protein
MFGYIKPLKCELKVKEYEEFRRYYCGVCKALKKYSIIPRFLLTYEAASLGLLLSSLNNSDLKRKRELCIFTLKKVDFYSSSEIDEVARIFVALLREKLKDNYIDRKNPVYLFASAFLKKDPEISRLFENFYEMERKEQDFEILAEKQGKIVGTILSKMVKEETQRKILYYLGLSLGKWLYIIDALDDFEKDKRKNVFNPLVKKYNGDLEKARSELRPQLKKCIDEMWKAYDLLDIKRNKTILDNIVYLGIPFITENVLIGKTCNLNHSTIL
>NC_010483.1|WP_011943634.1|1059196_1059772_+|hypothetical-protein
MVGRFPIYVEEEFISDEKKWEFVLSKIESIDPAVASFVEEAPDGTMRVIGPFRARSGYALVISSPLSSLFHFLVLNVPRVLNAVVKPGRAYVEIYEKRDLFDSPGVFTLKVKGAKGFSLKQTKEDMKLFLGVEVEPAFQPVSLRSTKNGVIMTLKTLTPETTALVKLSRLCGTGENRRYGHGDVEIYRIVE
>NC_010483.1|WP_012310880.1|1058084_1059224_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MKVTLKTLTPLHIGSGEKYPPCNLVVLKEEDNKKTAVRLNTRKFLEVLRKRPQITKELSKTLTLKEVENVEDGVFYEVSLYSDFSSGKRNPEIPEVVHHPDGSVYIPGSSLKGAVKLALTWHVLRNNRNLLEEFRKRVQEDIKNHKKNHKRTFYGTNEFLNGLFRFDPRGINTDYFRFLRISDSQTLKTQVVVHDVGIFYVARPNTHPRTFSLEFVPINRDFVFDVRFVKEEYDYFLTHVRKHYRVELPKSIEEIFSIVNEFYSEVFKFEKERFEKAKENFKGFDTSKIEERFQKIEKVLQSKKYVLIHVGYGGGLMANSLFILLDEETRKQVRNIIKNHGKDEAPLTRRYLVQSENNSYRVISPIGWCALWLEDSQST
>NC_010483.1|WP_193325876.1|1057236_1058088_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MSFRSGFRVGRGNETDSTLPTIHSDTIYGAVVYHAFKWSEKAEDFARKLKVSSLLFVRGDRLLVPKPFLYNTYSLEEDDEESPKELKKASYVFLDKLANYQSIKKASGAVCKENPVEIVRIPRNSLDRITSSSNLYFVEVAFVKEGFTPAFLAEFPDEYEDLFKTAVKSLGDSGIGADSTYGYGLFNAEFENAPDFPEEGEYYLTLSLFVPSTEERAKINEGYYRIIKRRGVKHDEMKVKKELFYVQEGSVFPFKPEGRGVLKIEDYFVQTSPLCVAFGGDRK
>NC_010483.1|WP_012310879.1|1056469_1057213_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MERPILGKYIIKGKIILETGLKIGGQELGVNIGGIDNPVIRNPLTGEPYIPGSSVKGKMRSLMERLLNLDISGNKVRRHECEERECKVCRVFGSTSKEGNNIPSRLLVRDAFLTEDSKTKLLSMETDLPYTEWKTENALDRVTCKADPRSFERIPAGAEFEFEIIYTAENEKHIKEDLENIATALELLEDDYLGGNGSRGYGKVKFSIEKVIFKSADYYKGEGTPVEKEVKGGVEGFKKAIPEIVKG
>NC_010483.1|WP_012310878.1|1056033_1056456_+|type-III-A-CRISPR-associated-protein-Csm2
MAVSQGVSLKEDLKDLVRKAEKIGRELSGKLKTNQLRKFHGHLTKIWSNYIYKKKDYRDNPEKFNEEILNELHFMKIFLAYQVGRDIEGISELKEILEPLIDEIKTPDEFEKFKKFYDAILAYHKFHSESEKSNRRTARR
>NC_010483.1|WP_012310877.1|1053865_1056019_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MKDREELVVGALLHDIGKVVRRAGDDRRHQIAGYDFTNKVKKFAVIQDYIHYHHEKDLLKKSLENEKVWYVCFADNLSSKERMTEGQKFEELRRMDNLLSKIPEGESSRNVTYFPAKPANEVVEAVKDMKEDQKTYEDLYRRFVEDAQKISPTPDDVNFLTYKYFSFIPQETRVEGDMDISLYDHLKVTAMLALSLYDYAKENDLKFESYQEMKSHFENSNVKPFLLVGGDVSGIQNFIANVSSKGALRSYRGRSFFIEILQEVVVDEILDKTGFYRTNVHFIGGGHFYLVLSNTEKVKKALEEIRNELNEWFRNRGLSLHLVIESVEFSVKDVEDMSKVFKKIGEKLNERKYRMYTEKDLEAIFPDDLNLIQEKGNHTCKICGNRVDRLFSIREGEEEIACDFCKEMYELGRELLEESHVYLAERKNGKFEIFKRKFDFSREPGEGFSYKLRRIYEFSEKEKNVRRIQVVTYFKEQEFEKIAEKAPGKKIASLLVDVDNLGKIFLKGLKKKTLSRYSTLSRLMSFFFKERVESIVEGKNVMVIYSGGDDLYLVGGWNDVLDVAKELREAFGRFTTNDFMTFSAGYVITDEKTSMSLIREMSERAESAAKKSGKNSIAFSNRNYYAVKWNTFFEMYNFYQELKEIADKVDRSVIRKALNLTREESPLNKAFLAYIEARENKDEDKRVANLMRENIDHLGENALNVILQFVDLLSRKS
>NC_010483.1|WP_012310876.1|1052198_1053845_+|CRISPR-associated-DxTHG-motif-protein
MGEVVKLVTFLGLGKYEESEIKINGNLLDGCVKNDGSQDIFCVRQSIFPLALIEYLNHIGKQVETIFFLTKTVKESKTWDECRRFLRSNIKDFEIPEGESSSNLMNFLVRNLVENLEEGDRVILDVTHSFRSIPLMASVVALYLKEAKDVNVSVVYGKYNKETKVTECEDLTPLTKATSWIYAVRLFKEYGYAKELADLIKKRNEEIYRRSQSSKKPKLLGSMSQKLQDLSSSIRLGSIVAIRKNLTNFFNFIDRNKARIREETEVFVPEIAALLDGIEKRYRVIHVKSENFELSEKELESEKELLDFYLQTGDLGMALRLAREYLINVYLMSGGEKSDFLDRNVRESVSISTFGYDTILQARNHVAHFGFNKLQLPSLKKIEDHLKVLVQTPPEQLLESARKTQRNRKRALLTPLGTTKGALYTVLKKISPDLLLVITSKQGKAILSEILEKAEFKGEFRVILLEDPFMGVSEIDRVVSEIKEHLSDVDEVIVNLTGGTTFLTYVIERAKNQIRYGRKVKTILAVDKRTYEEQKQNPFVVGEILELD
>NC_010483.1|WP_012310881.1|1064227_1065865_+|TIGR02556-family-CRISPR-associated-protein
MLEKIYNLGKIGIESLSDFAEELPLEDGLAIFLESGPNGLIFKDIGPVKKSPGGKSSKVFLYRKQRGNFSSSVSPTMKFLDESSVSRDPLERTFDVFLGFFDHPKISHIKDVLERNKEKIIEKLRNYDLKNRFLTISIDGKFPAEVPEILRAFEDKVTQKKTKGEAKCFLCGKEANSRLSDVFKFATFDKPGFTPFLSRKHPIQICGECRSVLEKARRVIDEKLSFSFFNNRILWIIPSVPNQDILESVIEKISEIKDTDKKSKLRSFARLERKIEDVLSENEKAVYDFILIEKEQQAERIVLHIEEVSPTRVRQILDESDKTESQLKEDGFEISVNFSVIHKFFEDLDRYFNSLFSAVFSEGTFDKKLLLTLFLSKIRSDFFGNDTLLSAREAFATYVYLRRLNVLKGGASVLKGEDFFSRYPEFFDEPWKKAVFLEGVLANYLLYLQYVKRNSKAFTKKLKGLRLTKRDVEGLLPEIRAKIEAYGGMSESVAELFREATEAFLEAGNWSASPDEISFVFVSGLSLGKTFFKEVEVDESGEKQE
>NC_010483.1|WP_012310882.1|1065839_1066739_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MNPVKNRSEVLFIYDVKWANPNGDPLDENRPRFDEETSRLFVTDVRLKRTVRDYLAEYYNETLWVTGEAVVPEERVKELEIQDVSDACKKCIDIRLFGAVIPQSKKGAMESSITGPVQFRYGTSLHRVKLMTIQGTAAFATKDSKQRSFREDQLVPYALIAFYGVINQNSAKFTGLTEEDVSKLLEGIWMGTKNLITRSKMEHNPRLLMRVVYKEGVNYHSGELDYLVKVVSEKEDEEIRDVSELKLDVTELKQVLESLKDKIERIEYSVDNRFKLAENKEEKSFEEIFGGFQLVKLEW
>NC_010483.1|WP_012310883.1|1066741_1067404_+|type-I-B-CRISPR-associated-protein-Cas5
MKVLVFDVSTSYALFRRPYTTTSSYTLPFPPRTALLGLVGCVLGYSTPEKLDSAKVAVQIKNPLKFLRTGTNFVETKKDKKASKRTRISLQLLKNPAYRVFFSWEDKDFERLKNLLEHNETIFTPYLGVASFIAKLDYVGEYEATRVEDFPCEVHTVVPNTIKIVPEPSHYLVFERVTRRMDKERNLLESAVYIFKRDLSPVKVEGGEVWRVGDQNVVWM
>NC_010483.1|WP_012310884.1|1067394_1069560_+|CRISPR-associated-helicase/endonuclease-Cas3
MDVVKSHPDRRLIDHLEGVKKRSMEKFRSLDLSWEELFGYDERILEEFVSLLSESHDIGKSTTYFQKHLNGERVERSLSAHAFSSAVAFFHRSKNLPDKLRIFGFEIIRRHHGDFRNFLDIEIDEKVLEKHFSAIPEDFLRRYDLHDLKLSETMKEMKKLISKFSILGKKELSDYFLIHLFMSVLVSSDREDVVFKDEPLPSLPSYEKEKILSYRENLGRKNQIDSLRWRFQDEILNFKPERGRIYSITAPTGIGKTLANLLFAGHLADEDTIIIYALPFINIIEQTVDKIKEIFETEDPFFVLPFHHLANPVYEEADKYEDLLMNLWHSRVIVTTFVSLLESLITFRKIPFFYKFPKAVLILDEVQAIPHEYWTPVEKTVEFLSKMGTTVLLSTATKPALLKEAQEVVSNKNVYFTALNRTVLKVEKEMSFEEYKEFVIETLKDGKRTLIITNTIREAEEIYDAVESMGKTCFLSSRVIPKHRLEIVSKINEYDLCVSTQVVEAGVDISFERVIRDIAPVDSIVQAAGRCNRHFELEKGEVIVVPVKDERKNTLFSSYVYGSFLTETSMNVLKNYKVLEESEFFTLVEDFFDYVKMYGNPDKKGIGKALENLNFKKIGEFSLIEPEPTVPFIVLIDEEAQRVFEEFAEIFDGKKSRENFSLVKRLFRELSPYIVSARIKKDLSFPHTIAGMVVIYRNVLDKWYHPVKGLRVEGSDEVIII
>NC_010483.1|WP_012310885.1|1069556_1070036_+|CRISPR-associated-protein-Cas4
MMISGAVVLSYINCKREAWLMAHGVLPDQGNMHIEIGRFIHEDYNDSIVLPGMKIDTIFEREGVKVIGEVKKSSASKKGAEYQLLYYLYRLEEKGVKAKGEIIVPKENQRIPVELTEENREKIKKVLEEVSSLLEEETPPPAKRKGICRKCGYELFCFS
>NC_010483.1|WP_012310886.1|1070045_1071005_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MESVYLFSSGTLKRKANTICLESEAGRKYIPVENVMDIKVFGEVDLNKRFLEFLSQKRIPIHFFNREGYYVGTFYPREYLNSGFLILKQAEHYINQEKRMLIAREIVSRSIQNMIDFLKKRKVQADSLTRYKKKAEEASNVSELMGIEGNAREGYYSIMDNLVSDERFRIEKRTRRPPKNFANTLISFGNSLLYTTVLSLIYQTHLDPRIGYLHETNFRRFSLNLDIAELFKPAVVDRLFLNLVNTRQINERHFDEISEGLMLNDQGKSLFIKNYEQILRETVFHKKLNRYVSMRSLIKMELHKLEKHLIGEQVFGSEE
>NC_010483.1|WP_012310887.1|1071018_1071282_+|CRISPR-associated-endonuclease-Cas2
MYVIMVYDVNEKRVVKILKIARKYLKWVQNSVLEGDLSPGKYEKLKMEISRRIDEKEDSVRFYVMDSQKVFNLEILGVEKGEDGFIF
>NC_010483.1|WP_029682943.1|1071265_1072573_+|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MASSSEEVSVLEIKCKVVTPMFSRGAAEPKWENGNRVYPFELRPQSIKGVLRFWFRAIAPTVIDIYSLEGLENLSKKEKERWEKEKYKGLKYLEGLIFGSQERKSPFSLEVEVKGESQALGSFEKRGRNHRIQIENGQLRPLKYFLYGLYDEKNAVSYEFLPPDSEFRIFIYTANKNIEEIILSLFKLVSTFSGFGAKTRKGFGEFLILEPSFDRNNYKDAIEGCQKAIEKFMKIHNSRSDIKFKPSQNTFAEIPEFPNFCDYNIFEFSIRDCRFWSDALKKFSYTYRNLKRILRKSKGDCVKEIVDALRGIKREVILPPAVMGLPLLYQRLKGFEDKRVAIFSSLQNLDLEEKRGRKPSPLFISLHEDGGNWKVAVLVMRSRITSNEEGKLETILFEDEGKEKESLFIVRMNERESYEELYKCLRKQSKEIQGG
>NC_010483.1|WP_012310889.1|1072575_1075014_+|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MSEREEFWKSKITALLHDPLVKAFDVKNHEDIAGEILKTLGIEKSRGEEDRLASAMDRFPIPYEKDAKKQIHVSFDETLFVHPFSGEELPEVKSFFQNQKVEEMKSRLINALTKLKERNNTYEKLFHSIWWNLPYILEGSQFLPADTRIANHSIIDHLDVTSALKGCVEGKQVKASLIAVAIGPVQEVIAQARKVKDLWAGSYLLSYLIYGAIEVVGKKYGFDSIISPYLRGNYFVKETLETMGVDLEDLCPVLPRREVASLPNLFVAIVPSSDEEILKECEEAIKNRWETIVDKTKEKLSKSEFLFNERSFDYQASLFPDIQTSKVSFDEPEKIVETVRNLFTGSGIEDFKEVLRKVSEHAGYKENPGTFYRYLHRLLTSKLAARKMARLFPGYEEDVYSPHFTSEKEFLDFLKEKEEELFHDADDFGAGVRACAVCRDIEKKDRLGTLNTVKRFLPEILNIRIKFDSTTDIARNNQANKEIEDPAKFKNGYIAVLLMDGDRMGDWMLGENAPSLEKVINPKVIEMFQETDDLKYAWEKLKEFKTIQPAYHRGVSRTLGIFSQFVGKIVDRHNGMLVYSGGDDVLALLPADSVLECANDIRKFFSGYLEYEIEIENGSDVERFRSENGVLYHNDKPFAPLMGKVATMSAGIAIVHHKFPLQVALNMAREAEKKAKRVYGRNAFCVAQVKRSGQIVFAGSRWEIEGEDVVRRSLKILEEMKNYNVSHRSLYKLLSPDFSLYEDKMEKFVEFTLRRSIHSEKSKNEFIGNFKDFLGRMVDYYKNTKRASFDEAMREALEFLIMVYSMKRGESQ
>NC_010483.1|WP_012310890.1|1075010_1076003_+|type-III-B-CRISPR-module-associated-protein-Cmr3
MKLWAIYFEPEDWVGFRETRRFSFSDRVESVFPSSFPFYGAVRTALLMKNQKFDPGNAERAGDIRMFGPFVFKNTPEGRKHYFPLPRNIYKTDSGYRVTPIVEIDGGYLPWKPEYRMDSKESMSGGLIELGDLELLRSNTQGVCKFDLVSTEKIFKKETHIGIAFEENRKKAKEGMIYSISYYRFHNGGFFMLTDDERTVELVSKLDGVFLGMKSRWAAVKVGEVNTTAFEPPDYENVAVALITPAVFDGGGMPKDRTILGKKVLTTAGIRKLVVSGWDLCKNRPKKIYHAVSPGAVYYLEGKVSGHVLNESKFTDFGFGRCVFMKYEKL

Crispr_ID: NC_010483_6

• CRISPR_ID: NC_010483_6
• CRISPR_location: 1223301-1224329
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 15 spacers

Consensus repeat of NC_010483_6

Consensus_repeat	Method
GTTTCAATACTTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CRISPRCasFinder
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CRT

spacers of NC_010483_6

>6.1|1223331|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TGAGTACAAAGATAAAGCCCGCAACTGCGAAGAGGAT
>6.2|1223398|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
ATGGATATCTTGCATATCAGGCAAACACCGTTGGTTT
>6.3|1223465|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TCTGCTATCTCGACAAGAAGCTCGTATGCGTTCACGC
>6.4|1223532|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
AGCTCTTCGGCGAAGCGTATGACGTCGCAGAGCTC
>6.5|1223597|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
ACGCCGATCATGTTGAGCTTATAACGGAGGAATCGC
>6.6|1223663|39|NC_010483|PILER-CR,CRISPRCasFinder,CRT
GGCCCTGATCTGCATCTATGTACACCCACGCAGAGATTG
>6.7|1223732|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
AGGAATTCGTTCGCATCCTCGACAGCATCAAAGACC
>6.8|1223798|38|NC_010483|PILER-CR,CRISPRCasFinder,CRT
AGTCAGGAAGCCCGAAGCAAGCGTGACGGTTATTCCCC
>6.9|1223866|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT
CTTTTCATCATTCCACCTCCCGACCTTCAGTATCC
>6.10|1223931|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
AGTTCGATGGGAAACTTGGGAAAGCTGAAATATACGC
>6.11|1223998|37|NC_010483|PILER-CR,CRISPRCasFinder,CRT
ACTTTTTTCTTGCTTTCGTTTATACGTCGCCAATCCA
>6.12|1224065|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TCTCCCTCCATAACTCTTTGATTTCAGGATCCATCC
>6.13|1224131|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
GAATTGCTCTTGTACGAAAAGCTCGAATCCTTCGTC
>6.14|1224197|36|NC_010483|PILER-CR,CRISPRCasFinder,CRT
TCAGAGGAGACTACGACCTTTTCGAATACGCCGACA
>6.15|1224263|37|NC_010483|CRISPRCasFinder,CRT
GCTCCTCCCTGTAGTCGTGGTCCACGATATTGAGCCA

CRISPR arrays and Neighbor proteins around NC_010483_6

CRISPR arrays

The CRISPR arrays of NC_010483_6

>merge|NC_010483|6|1223301-1224329|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATACTTCCTTAGAGGTATGGAAACTGAGTACAAAGATAAAGCCCGCAACTGCGAAGAGGATGTTTCAATACTTCCTTAGAGGTATGGAAACATGGATATCTTGCATATCAGGCAAACACCGTTGGTTTGTTTCAATACTTCCTTAGAGGTATGGAAACTCTGCTATCTCGACAAGAAGCTCGTATGCGTTCACGCGTTTCAATACTTCCTTAGAGGTATGGAAACAGCTCTTCGGCGAAGCGTATGACGTCGCAGAGCTCGTTTCAATACTTCCTTAGAGGTATGGAAACACGCCGATCATGTTGAGCTTATAACGGAGGAATCGCGTTTCAATACTTCCTTAGAGGTATGGAAACGGCCCTGATCTGCATCTATGTACACCCACGCAGAGATTGGTTTCAATACTTCCTTAGAGGTATGGAAACAGGAATTCGTTCGCATCCTCGACAGCATCAAAGACCGTTTCAATACTTCCTTAGAGGTATGGAAACAGTCAGGAAGCCCGAAGCAAGCGTGACGGTTATTCCCCGTTTCAATACTTCCTTAGAGGTATGGAAACCTTTTCATCATTCCACCTCCCGACCTTCAGTATCCGTTTCAATACTTCCTTAGAGGTATGGAAACAGTTCGATGGGAAACTTGGGAAAGCTGAAATATACGCGTTTCAATACTTCCTTAGAGGTATGGAAACACTTTTTTCTTGCTTTCGTTTATACGTCGCCAATCCAGTTTCAATACTTCCTTAGAGGTATGGAAACTCTCCCTCCATAACTCTTTGATTTCAGGATCCATCCGTTTCAATACTTCCTTAGAGGTATGGAAACGAATTGCTCTTGTACGAAAAGCTCGAATCCTTCGTCGTTTCAATACTTCCTTAGAGGTATGGAAACTCAGAGGAGACTACGACCTTTTCGAATACGCCGACAGTTTCAATAATTCCTTAGAGGTATGGAAACGCTCCTCCCTGTAGTCGTGGTCCACGATATTGAGCCAGTTTCAATGCGTCTTCAGAGGTACAAGAAC

>NC_010483|6|6|1223301-1224262|PILER-CR
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TGAGTACAAAGATAAAGCCCGCAACTGCGAAGAGGAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATGGATATCTTGCATATCAGGCAAACACCGTTGGTTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCTGCTATCTCGACAAGAAGCTCGTATGCGTTCACGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGCTCTTCGGCGAAGCGTATGACGTCGCAGAGCTC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACGCCGATCATGTTGAGCTTATAACGGAGGAATCGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GGCCCTGATCTGCATCTATGTACACCCACGCAGAGATTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGGAATTCGTTCGCATCCTCGACAGCATCAAAGACC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGTCAGGAAGCCCGAAGCAAGCGTGACGGTTATTCCCC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CTTTTCATCATTCCACCTCCCGACCTTCAGTATCC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGTTCGATGGGAAACTTGGGAAAGCTGAAATATACGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACTTTTTTCTTGCTTTCGTTTATACGTCGCCAATCCA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCTCCCTCCATAACTCTTTGATTTCAGGATCCATCC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GAATTGCTCTTGTACGAAAAGCTCGAATCCTTCGTC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCAGAGGAGACTACGACCTTTTCGAATACGCCGACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC

>NC_010483|6|6|1223301-1224329|CRISPRCasFinder
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TGAGTACAAAGATAAAGCCCGCAACTGCGAAGAGGAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATGGATATCTTGCATATCAGGCAAACACCGTTGGTTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCTGCTATCTCGACAAGAAGCTCGTATGCGTTCACGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGCTCTTCGGCGAAGCGTATGACGTCGCAGAGCTC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACGCCGATCATGTTGAGCTTATAACGGAGGAATCGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GGCCCTGATCTGCATCTATGTACACCCACGCAGAGATTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGGAATTCGTTCGCATCCTCGACAGCATCAAAGACC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGTCAGGAAGCCCGAAGCAAGCGTGACGGTTATTCCCC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CTTTTCATCATTCCACCTCCCGACCTTCAGTATCC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGTTCGATGGGAAACTTGGGAAAGCTGAAATATACGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACTTTTTTCTTGCTTTCGTTTATACGTCGCCAATCCA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCTCCCTCCATAACTCTTTGATTTCAGGATCCATCC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GAATTGCTCTTGTACGAAAAGCTCGAATCCTTCGTC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCAGAGGAGACTACGACCTTTTCGAATACGCCGACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCTCCTCCCTGTAGTCGTGGTCCACGATATTGAGCCA
GTTTCAATGCGTCTTCAGAGGTACAAGAAC

>NC_010483|6|6|1223301-1224329|CRT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TGAGTACAAAGATAAAGCCCGCAACTGCGAAGAGGAT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ATGGATATCTTGCATATCAGGCAAACACCGTTGGTTT
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCTGCTATCTCGACAAGAAGCTCGTATGCGTTCACGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGCTCTTCGGCGAAGCGTATGACGTCGCAGAGCTC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACGCCGATCATGTTGAGCTTATAACGGAGGAATCGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GGCCCTGATCTGCATCTATGTACACCCACGCAGAGATTG
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGGAATTCGTTCGCATCCTCGACAGCATCAAAGACC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGTCAGGAAGCCCGAAGCAAGCGTGACGGTTATTCCCC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	CTTTTCATCATTCCACCTCCCGACCTTCAGTATCC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	AGTTCGATGGGAAACTTGGGAAAGCTGAAATATACGC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	ACTTTTTTCTTGCTTTCGTTTATACGTCGCCAATCCA
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCTCCCTCCATAACTCTTTGATTTCAGGATCCATCC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	GAATTGCTCTTGTACGAAAAGCTCGAATCCTTCGTC
GTTTCAATACTTCCTTAGAGGTATGGAAAC	TCAGAGGAGACTACGACCTTTTCGAATACGCCGACA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	GCTCCTCCCTGTAGTCGTGGTCCACGATATTGAGCCA
GTTTCAATGCGTCTTCAGAGGTACAAGAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010483.1|WP_012311004.1|1226181_1226619_+|ferritin	unknown	unknown	gnl|CDD|224548
NC_010483.1|WP_012310996.1|1218513_1219110_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-YqeK	unknown	unknown	gnl|CDD|224627
NC_010483.1|WP_012311001.1|1221930_1222656_-|aspartate-dehydrogenase	unknown	unknown	gnl|CDD|237342
NC_010483.1|WP_012311008.1|1230490_1231807_+|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|223717
NC_010483.1|WP_004081910.1|1231813_1232092_+|ferredoxin-family-protein	unknown	unknown	gnl|CDD|225289
NC_010483.1|WP_004082152.1|1218231_1218513_+|DUF503-domain-containing-protein	unknown	unknown	gnl|CDD|224467
NC_010483.1|WP_012310993.1|1213234_1214896_+|phosphodiester-glycosidase-family-protein	unknown	unknown	gnl|CDD|378342
NC_010483.1|WP_012310997.1|1219093_1219750_+|hypothetical-protein	unknown	unknown	unknown
NC_010483.1|WP_012310995.1|1216948_1218217_+|alpha-amylase	unknown	unknown	gnl|CDD|200452
NC_010483.1|WP_012311002.1|1224464_1225241_+|endoglucanase	unknown	unknown	gnl|CDD|366751
NC_010483.1|WP_012311007.1|1229477_1230494_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl|CDD|224936
NC_010483.1|WP_012311005.1|1227905_1228526_+|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl|CDD|376806
NC_010483.1|WP_012310999.1|1220195_1221017_-|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl|CDD|272894
NC_010483.1|WP_012310998.1|1219746_1220205_+|YaaR-family-protein	unknown	unknown	gnl|CDD|224642
NC_010483.1|WP_012310994.1|1214895_1216947_+|elongation-factor-G	unknown	unknown	gnl|CDD|237186
NC_010483.1|WP_012311003.1|1225237_1226062_+|endoglucanase	unknown	unknown	gnl|CDD|366751
NC_010483.1|WP_011943761.1|1226580_1227003_-|RrF2-family-transcriptional-regulator	unknown	unknown	gnl|CDD|273242
NC_010483.1|WP_012311006.1|1228627_1229485_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl|CDD|224997
NC_010483.1|WP_012311000.1|1221021_1221918_-|quinolinate-synthase-NadA	unknown	unknown	gnl|CDD|236489
NC_010483.1|WP_011943760.1|1227030_1227900_+|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	unknown	unknown	gnl|CDD|224491

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010483.1|WP_012311004.1|1226181_1226619_+|ferritin	gnl|CDD|224548	COG1633, COG1633, Uncharacterized conserved protein [Function unknown].	1.16348e-26
NC_010483.1|WP_012310996.1|1218513_1219110_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-YqeK	gnl|CDD|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	3.7948e-72
NC_010483.1|WP_012311001.1|1221930_1222656_-|aspartate-dehydrogenase	gnl|CDD|237342	PRK13303, PRK13303, aspartate dehydrogenase.	9.50046e-115
NC_010483.1|WP_012311008.1|1230490_1231807_+|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	1.01217e-90
NC_010483.1|WP_004081910.1|1231813_1232092_+|ferredoxin-family-protein	gnl|CDD|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	1.37238e-41
NC_010483.1|WP_004082152.1|1218231_1218513_+|DUF503-domain-containing-protein	gnl|CDD|224467	COG1550, COG1550, Uncharacterized protein conserved in bacteria [Function unknown].	8.45038e-39
NC_010483.1|WP_012310993.1|1213234_1214896_+|phosphodiester-glycosidase-family-protein	gnl|CDD|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	2.89361e-21
NC_010483.1|WP_012310995.1|1216948_1218217_+|alpha-amylase	gnl|CDD|200452	cd11313, AmyAc_arch_bac_AmyA, Alpha amylase catalytic domain found in archaeal and bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes firmicutes, bacteroidetes, and proteobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	2.58234e-157
NC_010483.1|WP_012311002.1|1224464_1225241_+|endoglucanase	gnl|CDD|366751	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.	8.83607e-74
NC_010483.1|WP_012311007.1|1229477_1230494_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl|CDD|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	4.55438e-138
NC_010483.1|WP_012311005.1|1227905_1228526_+|CPBP-family-intramembrane-metalloprotease	gnl|CDD|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	3.08745e-10
NC_010483.1|WP_012310999.1|1220195_1221017_-|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl|CDD|272894	TIGR00078, Probable_nicotinate-nucleotide_pyrophosphorylase, nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	1.66809e-123
NC_010483.1|WP_012310998.1|1219746_1220205_+|YaaR-family-protein	gnl|CDD|224642	COG1728, COG1728, Uncharacterized protein conserved in bacteria [Function unknown].	1.18375e-53
NC_010483.1|WP_012310994.1|1214895_1216947_+|elongation-factor-G	gnl|CDD|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
NC_010483.1|WP_012311003.1|1225237_1226062_+|endoglucanase	gnl|CDD|366751	pfam01670, Glyco_hydro_12, Glycosyl hydrolase family 12.	1.62643e-28
NC_010483.1|WP_011943761.1|1226580_1227003_-|RrF2-family-transcriptional-regulator	gnl|CDD|273242	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein. This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. [Unknown function, General].	1.27805e-48
NC_010483.1|WP_012311006.1|1228627_1229485_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl|CDD|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.5077e-96
NC_010483.1|WP_012311000.1|1221021_1221918_-|quinolinate-synthase-NadA	gnl|CDD|236489	PRK09375, PRK09375, quinolinate synthase NadA.	2.81898e-159
NC_010483.1|WP_011943760.1|1227030_1227900_+|1,4-dihydroxy-2-naphthoate-octaprenyltransferase	gnl|CDD|224491	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism].	1.30243e-94

Protein sequences

>NC_010483.1|WP_012311001.1|1221930_1222656_-|aspartate-dehydrogenase
MTVLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPGVVRLGEFQVPSDVSTVVECASPEAVKEYSLQILKSPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGGLDVLSSIKDFVETVRIETIKPPKSLGLDLKGKTVVFEGSVEEASKLFPRNINVASTIGLIVGFEKVKVTIVADPAMDHNIHIVRISSAIGNYEFKIENIPSPENPKTSMLTVYSILRALRNLESKIVFG
>NC_010483.1|WP_012311000.1|1221021_1221918_-|quinolinate-synthase-NadA
MVDEILKLKKEKGYIILAHNYQIPELQDIADFVGDSLQLARKAMELSEKKILFLGVDFMAELVKILNPDKKVIVPDRSATCPMANHLTPEIIREYREKFPDVPVVLYVNSTSECKALADVICTSANAVEVVKKLDSSVVIFGPDRNLGEYVAEKTGKKVITIPENGHCPVHQFNAESIDAVRKKYPDAKVIVHPESPKPVRDKADYVGSTGQMEKIPEKDPSRIFVIGTEIGMIHKLKKKFPDREFVPLEMAVCVNMKKNTLENTLHALQTESFEVILPKEVIEKAKKPILRMFELMG
>NC_010483.1|WP_012310999.1|1220195_1221017_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MEKILDLLMSFVKEDEGKLDLASFPLRNTTTSAHLLLKAENVVASGIEVSRMFLEKMGLLSKFRVEDGEYLEKAGVIGEIEGNTYKLLVAERTLLNVLSVMFSVATTTRRFAEKLKHAKIAATRKTLPGLGVLQKIAVVHGGGDPHRLDLSGCVMIKDNHLKMYGSVERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKDINPNVIVEVSGGITEENVSLYDFETVDVISSSRLTLQEVFVDLSLEIQR
>NC_010483.1|WP_012310998.1|1219746_1220205_+|YaaR-family-protein
MRIDPLGGESLKNQEVKGKKSGKTSRVGESKKKEFFDILEDVKEDHFEKLLEEAVEEVIDSGNELVRSPTPSNLKRYKNAIKEFLKLIEKKIYKLAGSFDMNSGRARLHLVVEEVNEKLMDLTEKIMKNERPTINLAARIEEINGLILNLYR
>NC_010483.1|WP_012310997.1|1219093_1219750_+|hypothetical-protein
MKRSSKIVLVIVLIAVALSAVLFLYYRSFLTSPDYRAAEVHYLFRVGDNSYFVRIDDSKRMVFVVSFPKESFDPERRETIISERPLSDLEKMENLLEVKAERAFYSVMSEEEFLKLCQNLLGKQCESFPDFVKEFSKRKLKFFDFLFVGSWLKKFGFNNLNRFSLYKFFEKISNYAVDVFEAPTVTEKPIVIEAQGKKYERLYLDSEKLKAISEEMKR
>NC_010483.1|WP_012310996.1|1218513_1219110_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-YqeK
MVVITNELESIMERLLSRKRINHVRSVVEFSRKLGEMYGADLNKLELVAISHDLFRDVPPRKLLKMAQAYGLKISELERTHPVLLHGKVAAEFLKRRFNVEDEEVLNAVAYHTSGHVSFKTVGKILFIADSLEFTRDFPGVNELRRIAFRNLEEGFFQVLKNKIFYAVGKNYLLIPETVELWNSILMRRGGLVDEEVE
>NC_010483.1|WP_004082152.1|1218231_1218513_+|DUF503-domain-containing-protein
MSVGVVSLRVRLFGVRSLKEKRGILKRLMNDLRKKYNISISEVGAHDSKSFFEIGIAMVNTDRAVIERVFDSIIDYLDLYPGMEVEEIEREVW
>NC_010483.1|WP_012310995.1|1216948_1218217_+|alpha-amylase
MNFKRLIIYEAFARAYPGEKGKKFDSLIKDLERLKGMGINTVWLMPIHPTGIEGRKGTLGSPYAIRDYYEIDPFIGTKDDFKRFVKRAHELNMYVLMDMVLNHAAADNVLVRKHPEWFLRDENGNPTRKVPDWTDIVDFDYSNGELRKYMINMMKYWVEEFDVDGFRCDVAGLIPLDFWLQARKELDPLKRLIWLSETHDPYMYQAFDITYDYDGYYRFRDFIEGRGSLREYVDFLRMQDHIYPRGYIKMRFLENHDQPRIAKFIEEDSLIHWIAFLFTFKGVPLVHNGQEYGLKEDVDIFNEYTLPFPMEENRVSILHRKLAHYRYGTGVFTEGEMLFVKNDQPEKVISYLWRYENRYILCVLNPLLENTKVTLDFSGIWESACIHSKNVFNDEIVRVPVKNSRAIVEIGKEPLILSFVLY
>NC_010483.1|WP_012310994.1|1214895_1216947_+|elongation-factor-G
MGGLQNVRSATLIGHNGSGKSLLLAQILYKSGLIDKADTKYVDYDPVEEEKGASFSSHVASLEWKGKKVYLIDTPGFSDFISEVINGIFVSENIISVVNAVAGVEIQTERTWNMADEMKKPIMVFVNQMDKERANFENVVAELKERFSRKIVPVVVPIGAAENFEGVVDLLKKKVYRYDGDKVQEEDMPENFNDMRSEILEDIVEQDEELMMRYLDGEEIGYDELMRVLRESYKKGEIVPVLSGSALKGIGLDLLLDYLGDIGVSPEEAPSYKALLEDGTEIEVKFSEEEPFCAYIFKSVVDQFVGRITFAKVIAGVLRSGDTIVNVQKDVSEKLGHIYVPILKQQKEVESAGPGEIVVLLKLKEGAVGETLAHRDRRVKIVPPAFPEPMFSRSVHPKSKSDIDKISNGLSRLSDSDPTFVWEYDSETGETVVSGLGAMHLDVMIERLKKIFGVDVEVGKPKIAYRETITTTAVAEHKHKKQTGGHGQYGHVKIQLEPLPRGQGYEFVDKIVGGVIPRNFIPSVDKGIREAMKKGVLAGYPVTDVRVILFDGSYHEVDSSDISFQIAAIQAFKKGMEAAKPVILEPIMEVEVFVPEENAGDVMGEISSRRGRPLGMEPSGKGMVKVKAEVPLAEMLDFSSKLSSITSGRGYFTMRFQRYEIVPPNIQEKIIEERRREMQEQEK
>NC_010483.1|WP_012310993.1|1213234_1214896_+|phosphodiester-glycosidase-family-protein
MKQIILVLLIFASVVFGSYLISGGKAFPLRTVFSEGIYYVCAEDLAPAGVGYIHSNGYHYIVYDNHVLFIKEHETIFDFVEKLSPPIFADGLLFVPIDALKKVMEGYQVYTKGEKVLIYDSLPIVLSAAKEKNGVTITYTGTIVPDMVSVEKSMGKVRINLSPVVVSLPNVSEDIKVELEKNGLSFVVDVGNFYPDVEYSIGDGKLLFRFLLVEGFFGRQEVADGVVFERKIEEFDEGEKTVVNYLIMDPEKVTIKPVVVENGFGTIERLDEMVKRVGGIAGINGNYFDPITKFPIGLVVIDGKPYSAMFSGRPVFAITEDNEVFIGRVIVDVTLMVKDVLFLVKGINTLGEGEVLVYTKEFSKEIPKKDDKIYFVVKDNKVSQIGYKSHAENSEYVVSISKKYEEYLSDLKEGDEVYISLQPNIPLRIKQAVEGGPLLIQNGAPIPDALEEKARYGGGIAYAKAPRTVIATKDGKLWFLVFEGYNHITRGLTYDELVDFLVSRGFEDAMCVDGGSSSVMAVAGSLFGRTENSTAAIPVGIVVWEKKKTEVGE
>NC_010483.1|WP_012311002.1|1224464_1225241_+|endoglucanase
MVVLMTKPGTSDFVWNGIPLSMELNLWNIKEYSGSVAMKFDGEKITFDADIQNLSPKEPERYVLGYPEFYYGYKPWENHTAEGSKLPVPVSSMKSFSVEVSFDIHHEPFLPLNFAMETWLTREKYQTEASIGDVEIMVWFYFNNLTPGGEKIEEFTIPFVLNGESVEGTWELWHAEWGWDYLAFRLKDPVKKGRVKFDVRHFLDAAGKALSSSARVKDFEDLYFTVWEIGTEFGSPETKSAQFGWKFENFSIDLEVRE
>NC_010483.1|WP_012311003.1|1225237_1226062_+|endoglucanase
MRWAVLLMVVFSTLLFSSEVVLTSVGATDISFNGFPVTMELNFWNVKSYEGETWLKFDGEKVEFYADLYNIVLQNPDSWVHGYPEIYYGYKPWAGHNSGVEFLPVRVKDLPDFYVTLDYSIWYENNLPINLAMETWITKSPDQTSVSSGDAEIMVWFYNNVLMPGGQKVDEFTTTVEINGVKQETKWDVYFAPWGWDYLAFRLTTPIKEGKVKFNVKDFVQKAAEVVKKHSTRIDNFEELYFCVWEIGTEFGDPNTTTAKFGWTFRDFSVEVVK
>NC_010483.1|WP_012311004.1|1226181_1226619_+|ferritin
MKVSDILTVAIRLEEEGERFYRELSEYFDGEIKKTFLELADQERAHAEIFRKISDQENWDEVDSYLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGFVNSDAQKTVKKIIDQEKEHLRKLLEMKREST
>NC_010483.1|WP_011943761.1|1226580_1227003_-|RrF2-family-transcriptional-regulator
MFGKCQKHVRYALRLLVRLSLENRPMSSSELAEKELITRNFTLKVLHYLKRSGLVNSIKGKNGGFVLAKSPDEISFLDVISVFEKDLVIVDCNSRCKNYRACRVKYFWNWLSDYLKDLFSNITIKDIASGTFTFHLEKLS
>NC_010483.1|WP_011943760.1|1227030_1227900_+|1,4-dihydroxy-2-naphthoate-octaprenyltransferase
MKYFVAVRPFSFVASAFPVTVGAMLAEEFSLTRYILSLIASIFLHAGVNTTNDYFDYKKGVDTKDSLGSSGLLVSGKITPREELLLSVFCYAVSVVLGLVLIKISGPALLWLGLTGLVLGYAYTGHPFYLKYKSLGMFLVFILMGPLMVLGAYYVQTGRFSLEALLVSIPVGIATDLILLANEIRDSEFDRRSGIKTLPILIGDRAASFLYAVLTGLIYVFIVILVSTGVFRVISLVSLVSLPLYIRVIKQLFQKSAGRKNAREIADVDKMSALAEMILFVSMILGLLR
>NC_010483.1|WP_012311005.1|1227905_1228526_+|CPBP-family-intramembrane-metalloprotease
MVKRISEISFLSVLIGLFLGWYFVFQVNMLDFWWRMFMTTLIFSVISIFLGGKRNIKPNKYEAPLAIYSAVAAYLLFVVGYLISLLIPPFHRDVVSVYGLAEGQNALKVIILLVFIAFFEEIIWRGFVTEFLLQRMDVVPSILISSLLYSVVHVFTGNMALIVGAFVLGIILSLLYVITGKVSTPAFAHALWSLLIFVVLPLKGGF
>NC_010483.1|WP_012311006.1|1228627_1229485_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNVVVCIKQVPDTTNVRIDRKTNNLVREGVPSIINPDDERALELAAQLKEKFGATVYVITMGPPQAKEALKDAIAFGLDEAVHLSDRAFAGADTLATTYTLYWGIKKIEERIGKIDLILTGKQAVDGDTGQVGPGLATRFGYALGAYVVRIEEIDPEKKEMVIVRRLDRGFEKIRLKLPAVLTITDELNKPRYANLPNLIRAIKYEPIVWTHKDLGLDPKKCGFFGSPTRVVSTNIPPARKGGDIISKNEDPEVAAEKLIEALKKFEAVRLVEALKPVLEGEKDE
>NC_010483.1|WP_012311007.1|1229477_1230494_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MSEKKIIFVLIEHHGGKAHPVSWELIGKARDLASKLENSEVWGVLLGEGLESVAKEAIQRGADKVLYVKNREFNTYVNYLYKKALVDMVRKYRPEIFLIGATLEGRELAGMVATELETGLTADCTGLDIIPDKKLLAMTRPTFGGNLMATIMCPDHRPQMATVRPGVMKELPPDPERTGEIIEEEYDLGTFDKLIEILETIPLQTQVNLEYAPVVVAGGKGVGGPEGFKKLKELADLLGGEVGASRAAVKAGWISPEHQVGQTGKTVRPVLYFACGISGAIQHVVGIRESEIIVAINIDEKAPIFDIADIGIVGDLHKVVPALTAKLRELLNKSGVKK
>NC_010483.1|WP_012311008.1|1230490_1231807_+|NAD(P)/FAD-dependent-oxidoreductase
MKIEFDVVVVGAGSSGLSCAYVLAKNGLKVAVVEKGEYPGSKNVMGGVLYVHPLKEIMPDFLEKAANSKALERNVIEQNLWLLGNEGVIKIGHRNVEWKENPNAFTVLRANFDRWFAQEVEKAGALIIPKTKVEDFLRNEKGEIAGVVTSRPKGEIHSKAVVIAEGVNPILTMKAGLRKEDLKPHMVAVAVKEVISVPEEVVNRVFGVEGNDGATIELLGSWSEGMFGMGFLYANRSSVSLGCGVLLEDLRKKKIKPYQLLENLKNHPVISDMLGEYRNNTMEYLAHLIPEGGYYAMPKVYGDRVLVCGDAAMLVNSIHREGSNHAITSGRLAAETLLEAFEKGDFSEKTLKNYYLRLKESFILKDLEKYKDLMPTMEKNHQFVEIYPDLANDALKRFLQVDGTPKWDVQKQIADMVLSRRSLIGISLDLLRFWRAVR
>NC_010483.1|WP_004081910.1|1231813_1232092_+|ferredoxin-family-protein
MRIEDKLYLNRYRTDEENPHLKIKDESICAEKCSDRPCVSCCPADVYEWTESGMEVKFEGCLECGTCRIVCPFGNIEWNYPRGNYGVLYKFG

Crispr_ID: NC_010483_7

• CRISPR_ID: NC_010483_7
• CRISPR_location: 1335694-1336249
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 8 spacers

Consensus repeat of NC_010483_7

Consensus_repeat	Method
GTTTCAATACTTCCTTAGAGGTATGGAAAC	PILER-CR
GTTTCCATACCTCTAAGGAATTATTGAAAC	CRISPRCasFinder
GTTTCCATACCTCTAAGGAA	CRT

spacers of NC_010483_7

>7.1|1335724|36|NC_010483|PILER-CR,CRISPRCasFinder
AGAGAACGGGACACGTGGTGGGAGGGAATCAAAGAT
>7.2|1335790|35|NC_010483|PILER-CR,CRISPRCasFinder
CCATACAAGGTCTTTCACTCGCCAAGAGGCTCATT
>7.3|1335855|37|NC_010483|PILER-CR,CRISPRCasFinder
ACAAAGCCAACGTGATCGAGATAAGGTACAAAGACAG
>7.4|1335922|34|NC_010483|PILER-CR,CRISPRCasFinder
TCTCTACGATGATGTTGTTGCCGTCAAGCCTCTA
>7.5|1335986|36|NC_010483|PILER-CR,CRISPRCasFinder
TTTGCTAATCCACGACGGCACAGACAACGAATTCTT
>7.6|1336052|36|NC_010483|PILER-CR,CRISPRCasFinder
ATATCGGTTCGAGCGCTTTCCTGAATGCTGTGTCTA
>7.7|1336118|36|NC_010483|PILER-CR,CRISPRCasFinder
ACGCCTTATCGTTAAACGAAATGACACGATAGTAGT
>7.8|1336184|36|NC_010483|PILER-CR,CRISPRCasFinder
TTTTGAGATTACACTCGAAGACATAGATATAGTTGT
>7.9|1335714|46|NC_010483|CRT
TTATTGAAACAGAGAACGGGACACGTGGTGGGAGGGAATCAAAGAT
>7.10|1335780|45|NC_010483|CRT
CTATTGAAACCCATACAAGGTCTTTCACTCGCCAAGAGGCTCATT
>7.11|1335845|47|NC_010483|CRT
GTATTGAAACACAAAGCCAACGTGATCGAGATAAGGTACAAAGACAG
>7.12|1335912|44|NC_010483|CRT
TTATTGAAACTCTCTACGATGATGTTGTTGCCGTCAAGCCTCTA
>7.13|1335976|46|NC_010483|CRT
TTATTGAAACTTTGCTAATCCACGACGGCACAGACAACGAATTCTT
>7.14|1336042|46|NC_010483|CRT
TTATTGAAACATATCGGTTCGAGCGCTTTCCTGAATGCTGTGTCTA
>7.15|1336108|46|NC_010483|CRT
GTATTGAAACACGCCTTATCGTTAAACGAAATGACACGATAGTAGT
>7.16|1336174|46|NC_010483|CRT
GTATTGAAACTTTTGAGATTACACTCGAAGACATAGATATAGTTGT

CRISPR arrays and Neighbor proteins around NC_010483_7

CRISPR arrays

The CRISPR arrays of NC_010483_7

>merge|NC_010483|7|1335694-1336249|PILER-CR,CRISPRCasFinder,CRT
GTTTCCATACCTCTAAGGAATTATTGAAACAGAGAACGGGACACGTGGTGGGAGGGAATCAAAGATGTTTCCATACCTCTAAGGAACTATTGAAACCCATACAAGGTCTTTCACTCGCCAAGAGGCTCATTGTTTCCATACCTCTAAGGAAGTATTGAAACACAAAGCCAACGTGATCGAGATAAGGTACAAAGACAGGTTTCCATACCTCTAAGGAATTATTGAAACTCTCTACGATGATGTTGTTGCCGTCAAGCCTCTAGTTTCCATACCTCTAAGGAATTATTGAAACTTTGCTAATCCACGACGGCACAGACAACGAATTCTTGTTTCCATACCTCTAAGGAATTATTGAAACATATCGGTTCGAGCGCTTTCCTGAATGCTGTGTCTAGTTTCCATACCTCTAAGGAAGTATTGAAACACGCCTTATCGTTAAACGAAATGACACGATAGTAGTGTTTCCATACCTCTAAGGAAGTATTGAAACTTTTGAGATTACACTCGAAGACATAGATATAGTTGTGTTTCCATACCTCTAAGGAAGTATTGAAAC

>NC_010483|7|7|1335694-1336249|PILER-CR
GTTTCCATACCTCTAAGGAATTATTGAAAC	AGAGAACGGGACACGTGGTGGGAGGGAATCAAAGAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CCATACAAGGTCTTTCACTCGCCAAGAGGCTCATT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACAAAGCCAACGTGATCGAGATAAGGTACAAAGACAG
GTTTCCATACCTCTAAGGAATTATTGAAAC	TCTCTACGATGATGTTGTTGCCGTCAAGCCTCTA
GTTTCCATACCTCTAAGGAATTATTGAAAC	TTTGCTAATCCACGACGGCACAGACAACGAATTCTT
GTTTCCATACCTCTAAGGAATTATTGAAAC	ATATCGGTTCGAGCGCTTTCCTGAATGCTGTGTCTA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACGCCTTATCGTTAAACGAAATGACACGATAGTAGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTTTGAGATTACACTCGAAGACATAGATATAGTTGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC

>NC_010483|7|7|1335694-1336249|CRISPRCasFinder
GTTTCCATACCTCTAAGGAATTATTGAAAC	AGAGAACGGGACACGTGGTGGGAGGGAATCAAAGAT
GTTTCCATACCTCTAAGGAACTATTGAAAC	CCATACAAGGTCTTTCACTCGCCAAGAGGCTCATT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACAAAGCCAACGTGATCGAGATAAGGTACAAAGACAG
GTTTCCATACCTCTAAGGAATTATTGAAAC	TCTCTACGATGATGTTGTTGCCGTCAAGCCTCTA
GTTTCCATACCTCTAAGGAATTATTGAAAC	TTTGCTAATCCACGACGGCACAGACAACGAATTCTT
GTTTCCATACCTCTAAGGAATTATTGAAAC	ATATCGGTTCGAGCGCTTTCCTGAATGCTGTGTCTA
GTTTCCATACCTCTAAGGAAGTATTGAAAC	ACGCCTTATCGTTAAACGAAATGACACGATAGTAGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC	TTTTGAGATTACACTCGAAGACATAGATATAGTTGT
GTTTCCATACCTCTAAGGAAGTATTGAAAC

>NC_010483|7|7|1335694-1336239|CRT
GTTTCCATACCTCTAAGGAA	TTATTGAAACAGAGAACGGGACACGTGGTGGGAGGGAATCAAAGAT
GTTTCCATACCTCTAAGGAA	CTATTGAAACCCATACAAGGTCTTTCACTCGCCAAGAGGCTCATT
GTTTCCATACCTCTAAGGAA	GTATTGAAACACAAAGCCAACGTGATCGAGATAAGGTACAAAGACAG
GTTTCCATACCTCTAAGGAA	TTATTGAAACTCTCTACGATGATGTTGTTGCCGTCAAGCCTCTA
GTTTCCATACCTCTAAGGAA	TTATTGAAACTTTGCTAATCCACGACGGCACAGACAACGAATTCTT
GTTTCCATACCTCTAAGGAA	TTATTGAAACATATCGGTTCGAGCGCTTTCCTGAATGCTGTGTCTA
GTTTCCATACCTCTAAGGAA	GTATTGAAACACGCCTTATCGTTAAACGAAATGACACGATAGTAGT
GTTTCCATACCTCTAAGGAA	GTATTGAAACTTTTGAGATTACACTCGAAGACATAGATATAGTTGT
GTTTCCATACCTCTAAGGAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010483.1|WP_012311061.1|1345326_1346466_+|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl|CDD|369272
NC_010483.1|WP_011943685.1|1325940_1326327_+|hypothetical-protein	unknown	unknown	unknown
NC_010483.1|WP_012311049.1|1323580_1325944_+|endopeptidase-La	unknown	unknown	gnl|CDD|223542
NC_010483.1|WP_012311052.1|1334028_1335612_+|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit	unknown	unknown	gnl|CDD|237369
NC_010483.1|WP_012311055.1|1339045_1340002_-|SufD-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl|CDD|223791
NC_010483.1|WP_012311059.1|1343554_1343782_+|NAD(P)H-dependent-oxidoreductase-subunit-E	unknown	unknown	gnl|CDD|224817
NC_010483.1|WP_012311054.1|1338118_1338889_-|inositol-monophosphatase	unknown	unknown	gnl|CDD|223559
NC_010483.1|WP_008194938.1|1331259_1332093_+|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein	unknown	unknown	gnl|CDD|235747
NC_010483.1|WP_011943847.1|1341373_1342099_-|nucleotidyltransferase	unknown	unknown	gnl|CDD|224134
NC_010483.1|WP_012311058.1|1342139_1343288_-|inositol-3-phosphate-synthase	unknown	unknown	gnl|CDD|224180
NC_010483.1|WP_008194936.1|1330655_1331276_+|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224054
NC_010483.1|WP_012311057.1|1340762_1341380_-|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl|CDD|223632
NC_010483.1|WP_008194934.1|1330017_1330638_+|hypothetical-protein	unknown	unknown	gnl|CDD|224331
NC_010483.1|WP_012311056.1|1339998_1340730_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|223473
NC_010483.1|WP_008194941.1|1333483_1333993_+|dihydrofolate-reductase	unknown	unknown	gnl|CDD|223340
NC_010483.1|WP_008194940.1|1332089_1333496_+|NADPH-dependent-glutamate-synthase	unknown	unknown	gnl|CDD|183780
NC_010483.1|WP_012311050.1|1326328_1327477_+|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl|CDD|223497
NC_010483.1|WP_012311060.1|1343774_1345340_+|4Fe-4S-binding-protein	unknown	unknown	gnl|CDD|226972
NC_010483.1|WP_012311053.1|1336818_1338117_-|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl|CDD|224536
NC_010483.1|WP_012311051.1|1327466_1330025_+|SMC-family-ATPase	unknown	unknown	gnl|CDD|223496

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010483.1|WP_012311061.1|1345326_1346466_+|SpoIIE-family-protein-phosphatase	gnl|CDD|369272	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE). This family contains a number of bacterial stage II sporulation E proteins (EC:3.1.3.16). These are required for formation of a normal polar septum during sporulation. The N-terminal region is hydrophobic and is expected to contain up to 12 membrane-spanning segments.	5.36333e-08
NC_010483.1|WP_008194934.1|1330017_1330638_+|hypothetical-protein	gnl|CDD|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	0.00455327
NC_010483.1|WP_012311049.1|1323580_1325944_+|endopeptidase-La	gnl|CDD|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NC_010483.1|WP_012311052.1|1334028_1335612_+|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit	gnl|CDD|237369	PRK13376, pyrB, bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional.	0
NC_010483.1|WP_012311055.1|1339045_1340002_-|SufD-family-Fe-S-cluster-assembly-protein	gnl|CDD|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.55762e-69
NC_010483.1|WP_012311059.1|1343554_1343782_+|NAD(P)H-dependent-oxidoreductase-subunit-E	gnl|CDD|224817	COG1905, NuoE, NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion].	4.7176e-24
NC_010483.1|WP_008194938.1|1331259_1332093_+|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein	gnl|CDD|235747	PRK06222, PRK06222, sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein.	7.45117e-171
NC_010483.1|WP_011943847.1|1341373_1342099_-|nucleotidyltransferase	gnl|CDD|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	3.38534e-35
NC_010483.1|WP_012311058.1|1342139_1343288_-|inositol-3-phosphate-synthase	gnl|CDD|224180	COG1260, INO1, Myo-inositol-1-phosphate synthase [Lipid metabolism].	3.59468e-152
NC_010483.1|WP_008194936.1|1330655_1331276_+|ABC-transporter-ATP-binding-protein	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.87126e-69
NC_010483.1|WP_012311057.1|1340762_1341380_-|CDP-alcohol-phosphatidyltransferase-family-protein	gnl|CDD|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	2.23556e-16
NC_010483.1|WP_012311054.1|1338118_1338889_-|inositol-monophosphatase	gnl|CDD|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	7.16287e-89
NC_010483.1|WP_012311056.1|1339998_1340730_-|ABC-transporter-ATP-binding-protein	gnl|CDD|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	2.23417e-97
NC_010483.1|WP_008194941.1|1333483_1333993_+|dihydrofolate-reductase	gnl|CDD|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	2.368e-38
NC_010483.1|WP_008194940.1|1332089_1333496_+|NADPH-dependent-glutamate-synthase	gnl|CDD|183780	PRK12831, PRK12831, putative oxidoreductase; Provisional.	0
NC_010483.1|WP_012311050.1|1326328_1327477_+|exonuclease-SbcCD-subunit-D	gnl|CDD|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	2.04513e-63
NC_010483.1|WP_012311060.1|1343774_1345340_+|4Fe-4S-binding-protein	gnl|CDD|226972	COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal domain [General function prediction only].	1.08331e-98
NC_010483.1|WP_012311053.1|1336818_1338117_-|glycoside-hydrolase-family-32-protein	gnl|CDD|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	4.53229e-166
NC_010483.1|WP_012311051.1|1327466_1330025_+|SMC-family-ATPase	gnl|CDD|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	1.38086e-83

Protein sequences

>NC_010483.1|WP_012311052.1|1334028_1335612_+|bifunctional-aspartate-carbamoyltransferase-catalytic-subunit/aspartate-carbamoyltransferase-regulatory-subunit
MKRDFLGRTLAVIEDLSVEEQMFLYEKTRELKQRWYSGEDVSDFRIKKRNVGIYIVFVEPSTRTKESFINAAKFHSGPNVKVNVFDSEHSSFNKQESYTDTFSMLTGYSDYSIFVVRTRLEGVCRLLERRISEFASRNGIEVPSFINAGDGKHEHPTQELLDEYTFLEQNGFDNSFIHVALVGDLLHGRTVHSKVNGLKIFKNVKVDLVAPEELMMPEHYVEKMKKNGFEVRIFSSIREYLSQKDVAKIWYFTRLQLERMGEDILEKVHILREAVTFKKEYLDALPEGVKFYHPLPRHKVYPTIPNFLDTLPLNGWETQARNGYWVRIVLLSMFGGALEAPFDTSKKEEKPEEDFIIPAPITHGSKGVQKEGKRGIKPIENGTVIDHIAKGKTPEEIYSTIVKIRKILRLYDVDSADGIFRSSDGNFKGYISLPDRYLSKREIKKLSAISPNTTVNIIKNSTVVEKYRIKLPPTIYGFEELRCKNENCITNPAHGENASPSFVRNEKGQFICEYCETPHSFEEIWSI
>NC_010483.1|WP_008194941.1|1333483_1333993_+|dihydrofolate-reductase
MAKVIFVLAMDVSGKIASSVEGWNSFEDRKNFREITTEIGNVVMGRVTFEEIGRPLPERLNVVLTRRRRSSDDPSLVFFNGSPGDVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKGIPFFDEFEGYFPLKLLEMRRLNERGTLFLKYSVEKSHR
>NC_010483.1|WP_008194940.1|1332089_1333496_+|NADPH-dependent-glutamate-synthase
MKNRKTPMKEQSPESRRRNFEEVALGYTLEEAVAEAQRCLQCPTHPCVSGCPVGIDIPGFIRKLREGKLEESYSILKSYNNLPAVCGRVCPQEVQCESRCVVGKMKDSESVAIGRLERFVADWAAENLEEDVKPLAGLKKEKVAVVGSGPAGLTAAADLAKMGYHVDVFEAFHKPGGVLVYGIPEFRLPKRIVEREVNYIKKLGVNFYLNTVVGKTVKVKELLSEYDAVFIGTGAGTPKFMGIPGTNLNGVYSANEFLTRVNLMKAYLFPEYDTPIRVGKRVAVIGAGNTAMDAARSALRLGAEKVYIVYRRTEREMPARREEYHHALEEGIEFLWLTLPIRYVGDANGNVEAVECVRMELKEADGSGRPRPVPIEGSNFVLKVDMVIEAIGQGPNRVLLSEFPGLELNERGYIKADEDTGATSVKGVFAGGDIVTGAATVIKAMGAGKKAAQFIHSYLTGEWNPWQK
>NC_010483.1|WP_008194938.1|1331259_1332093_+|sulfide/dihydroorotate-dehydrogenase-like-FAD/NAD-binding-protein
MNEIVKKTKIAEDVFDFWIHSPSVSKEAGPGQFVVIRLHEKGERIPLTVADTRPDEGLFRMVVKVVGKTTHELSLKKEGDTILDVVGPLGNPSEIENYGNVLLVGGGVGIATLYPIAKALKEAGNNITTVLGARTKDYLIMVDEFKEISDVLLVTDDGSAGMKGVVTDAMDKLFRERKFDICWAVGPTIMMKFCTLKAREFGVPIWVSLNPIMVDGTGMCGACRVTVSGQIKFACVDGPEFRGEEVDWDELLKRLAQYREQEKISYERFLKTAGESE
>NC_010483.1|WP_008194936.1|1330655_1331276_+|ABC-transporter-ATP-binding-protein
MKKSYGKKKVLDGVSFSLEKGKSLGIVGQNSAGKTTLLKILATILKPDEGRLFLFEKNALKDLSYIRKRIAFVPEFPALLEELTVRENLLFFSRLRGVKMESFIVSELMLEPFMETFVRNASKGVKQRTALAVALFGNPELLILDEPTSGLDVESASIVRSKLKRLKEEGITVIISSHIREDIEELCDEILVINGESGGSNLERDR
>NC_010483.1|WP_008194934.1|1330017_1330638_+|hypothetical-protein
MSDERRKKEELIERIVSEKGEEAFPKLLELLEDEDPEVKEIVSEVFYRLGDRAREFLFNEIQKRRERGFEKNDITNLYIIDILGDLGEKRMKNVLYELMEKYDSEEALLIIYEALAKIGEGEVFLPELEYLMFEDAYRKELCEQVAMVLANIPTERSLRILLKALKNKEFSEDQKEFFRRAVEMILYRKPELSKYVTDEERKELGL
>NC_010483.1|WP_012311051.1|1327466_1330025_+|SMC-family-ATPase
MRPERLTVRNFLGLKNVDIEFQSGITVVEGPNGAGKSSLFEAISFALFGNGIRYPNSYDYVNKNATDGTARLVFQFERGGKRYEIIREINALQRKHNAKLSEILENGKKAAIAAKPASVKQEVEKILGIEHRTFIRTVFLPQGEIDKLLTSPPSEITEIISDVFQSKETLEKLEKLLKEKMKKLENEISSLQALYAASWKYLEENDLEVLKSELKTVSEKKKELLKKREELQKEEEQLKRLLEKYRELVKKKERLKALSLRKNELQKEVVHEQKVKKAKELEPLFRELYLRQREFERLSQDLNSREERYKELEKKKEAISKEIPVHRERLSKLEEMAENLNEELDLLEKVLKVSRPFLEQRIRLKENLTRLEEEIRRLVGEKEKREKELLSIEKTENETKDELEKLLGELSVLKKDHMKWLAYQIASSLNEGDTCPVCGGVFHGKMEAVEFNVDEFEKLDQKRSELENTLNVLKERKKSLSSLIEDLLMKTEEGKKNLKSIRNQIEKIEEELHRLGYSEDLEEKLDEKRKKLRKIEEERHSISQKITAADVQISQIENQLKEIKGEIEAKRETLKEQREEMDQLKRDFFDRLGEIGIGFEEFRILVKEEVKDAEKELGIVETEIRLLEGSLKELESENVRDVSEDYERVRNQLEALSQEISDLERKEGRLNHLIEETLRRERELKSLEKKLKELSDEYNNLDLLRKYLFDKSNFSRYFTGRVLEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDKEFSEAFDRKLRIMGGVVVNE
>NC_010483.1|WP_012311050.1|1326328_1327477_+|exonuclease-SbcCD-subunit-D
MKELRILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKRGVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKGLKLFGNFITSISSDITFVMSFEPVDVEAKRGQKVRILPFPYPDESEALRKNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLSGYAGIEQGREIIINRALIPSVVDYAALGHIHSFREIQKQPLTIYPGSLIKIDFGEEADEKGAVFVELKRGEPPRYERIDVVPLPLKTLYYKKIDTSALRSIRDFCRNFPGYVRVVYEEDSGILPDLMGEIDNLVKIERKSKREIEEVLRESMEEFKEELDKIDYFELFKEYLKKREENHEKLLKILDELLDEVKKSEA
>NC_010483.1|WP_011943685.1|1325940_1326327_+|hypothetical-protein
MKRDIFYVIILTVFAVLFMLTYFSYRNLAVKLTRMEKTLKAYELYIFSDYESFENYVKKEGLKIEGMELLKEKKARSLIAEGKDLFETANYGEALVFFEKAFNLSDNEEIKKIASFYLEECRKKLAGD
>NC_010483.1|WP_012311049.1|1323580_1325944_+|endopeptidase-La
MPKKSKDTEKSFKILEKYASQQEKELEIPDSLPCIPLRNGMGVFPNTVVPFYVGRTGSLIALEEAMEKYNRLLLVVNQKDPSVETPEPEDLYKVGTVVKVLQIMKLPDDTFKVLVEGLERAQIEEFVSTDPFFLTKIKILKVKYRKTKKLEALMRSVKDKAVRYFNLTHRFPQETLVTLKEMQDPDKLADFVASILPVPLETKQELLETIHPLERLEKILSILVKEIEILEIEEEIEKKVKDRIEKTQREYVLREKLRAIKEELGAEEELEIKELYEKVEKGDYPDYVKEKAYKEIQRLEKMSPYSAEATVVRTYLDWLLNLPWSAASEDRLDIKEAGKILDKNHYGLEEVKERILEYLVARKFSKNLKAPILCLVGPPGVGKTSLGRTIAEAMGRKFGRMSLGGLRDEAEIKGHRRTYVGALPGRIIQIIRRLGTKNPVILLDEVDKMGISFQGDPASALLEVLDPEQNKDFVDHYLEVPFDLSQVLFITTANVLHTIPPALRDRMEIIEIPGYSDPEKYHIARDYIIPKIAQAYGLSKVMFTPGAIKKIIREYTKEAGVRNLERVIEKVIRKSLVKGEKKSFKITTKDVEELLGPPVFKEEEILEEDTVGAVTGLAWTPVGGSVLIVESLLVPGKGNLILTGNMGDVMKESARIALSVVRKMCGEECREVFEKNDIHIHVPEGAVPKDGPSAGITITVALYSAVTGKKVRRDVAMTGEITLRGKILPVGGIREKLLAAKRAGIKKVILPSRNRPDVEKIPKEYLNGMEIVYCSEIQEVLKEAIVR
>NC_010483.1|WP_012311053.1|1336818_1338117_-|glycoside-hydrolase-family-32-protein
MFKPNYHFFPITGWMNDPNGLIFWKGKYHMFYQYNPRKPEWGNICWGHAVSDDLVHWKHLPVALYPDDETHGVFSGSAVEKDGKMFLVYTYYRDPAHNKGEKETQCVAMSENGLDFVKYDGNPVISKPPEEGTHAFRDPKVNRSNGKWRMVLGSGKDEKIGRVLLYTSDDLFHWKYEGVIFEDETTKEIECPDLVRIGEKDILIYSITSTNSVLFSMGELKEGKLNVEKRGLLDHGTDFYAAQTFFGTDRVVVIGWLQSWLRTGLYPTKREGWNGVMSLPRELYVENNELKVKPVDELLALRKRKVFETAKSGTFPLDVEKNSYEIVCEFGGEIELRMGNESEEVVITKSRDELIVDTTRSGVSGGEVRKATVEDEATNRIRAFLDSCSVEIFFSDSIVFSFRIHPEKVYNVLSIKTDQVKLEVFELKNIWL
>NC_010483.1|WP_012311054.1|1338118_1338889_-|inositol-monophosphatase
MDRLDFSIKLLRKVGHLLMIHWGRVDNVEKKTGFKDIVTEIDREAQRMIVDEIRKFFPDENIMAEEGIFEKGDRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKMGVVHAPALNETLYAEEGSGAFFNGERIRVSENASLEECVGSTGSYVDFTGKFIERMEKRTRRIRILGSAALNAAYVGAGRVDFFVTWRINPWDIAAGLIIVKEAGGMVTDFSGKEANAFSKNFIFSNGLIHDEVLKVVNEVVEEIGGK
>NC_010483.1|WP_012311055.1|1339045_1340002_-|SufD-family-Fe-S-cluster-assembly-protein
MIVKDYRKEFETLAKAYEKAGGDVSKFLDRRIASIIISGDKVIGLNGVEGVELTPHRIENGVQVDMRIKEGVVVEYPVHVCTGYLEKKGLQRVVFNIRLEKNAKAIFVAHCVFPWTEDFTHDALMNVELEEGAWMEYHDEHMHSETGSINLITRSIARVGEGAVYRNTFTLVKTRIGTLRVFMDASLEKDAVGELYTKVKAIEDDDVEVKEILRLNGMGARGLAKTNAVAIDRAKVSVVNEVYGNAPHTRGHVECLEIAKGDGVDVRALPVLVVKNDSSELTHEASIGRVNAKQLETLMAKGLTEEEATEMIIKGILT
>NC_010483.1|WP_012311056.1|1339998_1340730_-|ABC-transporter-ATP-binding-protein
MLELIDVWYEVEGKAILKGINARFEKQRVYSILGTNGAGKSTLAYLIMGLEGYRPTRGKILLDGEDITDLSVTERAKRGITLMWQEPARFTGIKIRDYLTLGGRRKVSKEELERVLELVGLNSALYLERNVDEKLSGGERKRVELASILLMKPRYTILDEPDSGIDIMSLEMIEKVLSELVNAGGSVILVTHREEIALESDYAFLICHGSILKEGNPSEIVQFYKNSCDRCDHPNEPSGEMIV
>NC_010483.1|WP_012311057.1|1340762_1341380_-|CDP-alcohol-phosphatidyltransferase-family-protein
MLRKSTDGWISSLINRRFSSRITNLILEKNWQITPNQMSFISFLVGVLAFPFYLLKVPWIAGILVQVSSVLDGVDGELARARNVSSNWGAFFDTMLDRFVDILAVLGLSLYGSLKDSPSLSLLFWSVLAVSGSLMVSYLHSVGKVFGTHPALVGKLSGFASRDVRLFVVFVFSLFGMYLPALVVVSILSYVYTTGKFVELLVLNR
>NC_010483.1|WP_011943847.1|1341373_1342099_-|nucleotidyltransferase
MREAVVLASGAGKRLRSVTGDVPKVFYRFDGCELVKYPMISLMKNGVERFVLVVSEGYRDLGEKVLNDLGVEGIVVENKKVELGNAYSFFLSEPYVESEKFFLSCGDSLFPPEALKSAFSEDEFHIKLGVSKRSDLIDPEEASKVLVNEDRIVKIGKRIDEYNYFDTGVFVMTKKVYSLKESFSWTEEISLYHVLQKAVDTGMLVKVFDFGNALWTEIDSPEDLNEKVYELMKKIKEGVAC
>NC_010483.1|WP_012311058.1|1342139_1343288_-|inositol-3-phosphate-synthase
MVKVLILGQGYVASTFVAGLEKLRKGEVEPYGVPLARELPIDFKDIKIVGSYDVDRAKIGKKLSEVVKQYWNDVDSLTSDPEIRKGVHLGSVKNLPIEAEGLEDSMTLKEAIERLVDEWSKLDPDVIVNTCTTEAFKPFGNKEELLKAIENNDKERLTATQVYAYAATLYAKKRGGAAFVNVIPTYIANDPAFVELAKGNNLVVFGDDGATGATPFTADVLSHLAQRNRYVKDVAQFNIGGNMDFLALTDEGKNKSKEFTKSSIVKDILGYDAPHYIKPTGYLEPLGDKKFIAIHIEYTSFNGATDELMINGRINDSPALGGLLVDLVRLGKIALDRKEFGTVYPVNAFYMKNPGPAEEKNIPRIIAYEKMRIWAGLKPKWL
>NC_010483.1|WP_012311059.1|1343554_1343782_+|NAD(P)H-dependent-oxidoreductase-subunit-E
MIVRVCMGSSCHLKGSYEVVRRFQELQKKYNFKLYGSLCFGNCSQGVCVEIDGRLFSRVTPENAEEILKKVLQNG
>NC_010483.1|WP_012311060.1|1343774_1345340_+|4Fe-4S-binding-protein
MAELIFSRETDCRYCYKCLRNCPVKAISFKSGKSTVLEEECVFCGSCLDICPQNARSYRKDIERFLSLSEPFLVSIAPSFFAYFENPLKVIGVLKEMGAVVVQETAVGAEIVSRRYEEVFEKHSGPFITTACPVVVNLAEKHFPNVLKYFAPVDSPLMAHAKFLKTRYGDFPIVFVGPCIAKKSESDLVDVALTFEELEEILEEREGKEALPDGPYPDRARFYPTTDGIGYTVSVPWEKKLVVEGVENLMRVFSRIDEYKSVFIEASACYGSCLNGPVMKKKSNGKERLLEWQKKLPKEPKVNHLKIDTFRNYRNKSRNVEVPEEEIKKVLVSIGKDDPSKELNCGACGYDSCREKARAVVLGKAEKEMCFVYLLDLVKSSSYRVVEESPNAVFVLKDEKVIYRNRVAGELIQNYPEILERAKGSVGETLTIEGKRFFFVKEFSLEDGEEVIMLVDITQEKLKDEELDKVKRETLRKVEEMMNKQMRIAQEIAGILGESIAETKSSFMELKMFMEGENADL
>NC_010483.1|WP_012311061.1|1345326_1346466_+|SpoIIE-family-protein-phosphatase
MLTCDVFFASKNKKGEEVCGDSIKVKRESEKIVVSVSDGLGSGIKASILSTLTSTIASTMLMNGLPVTDVFRTILATLPICRVRKISYSNLCSVVCDFKNNTCTVVEYEFPVVMLFKGERRVFPEKLELEIEGKKVFVWQFQPEAGTLLFLATDGLSQAGMGTDLFPLGFGVENIEKEMKHLLKNHVSPENIVRHFVKLAEKLDQEVRGDDTLVACLNFREKRILNLFVGPPEDRKKDEEYVRTFLSLPGKKIVCGGTTGQIFERVTGKKVEIDLYTLSENSPPVGYMEGIDLMTEGIVTLTQVFRYLEGQSDELGYGAKFIVKSLLEADEINFFVGRAINPAHQNPLFSHDISLKFRLVKDIAQILRERGKIVNVQYC

Crispr_ID: NC_010483_8

• CRISPR_ID: NC_010483_8
• CRISPR_location: 1427022-1427251
• CRISPR_type: Orphan
• Repeat_type: III-A
• Spacer_info: 3 spacers

Consensus repeat of NC_010483_8

Consensus_repeat	Method
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CRISPRCasFinder

spacers of NC_010483_8

>8.1|1427052|36|NC_010483|CRISPRCasFinder
AAAATTCATATGTTAACACAAAATCGTCACTGTCGA
>8.2|1427118|38|NC_010483|CRISPRCasFinder
CGTATGTTCCATCATCAAGAAAGATGACTATTTGATAT
>8.3|1427186|36|NC_010483|CRISPRCasFinder
GCGGCCAGTCTGCACATTATCTCGCCTCCCTTTTGA

CRISPR arrays and Neighbor proteins around NC_010483_8

CRISPR arrays

The CRISPR arrays of NC_010483_8

>merge|NC_010483|8|1427022-1427251|CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAACAAAATTCATATGTTAACACAAAATCGTCACTGTCGAGTTTCAATAATTCCTTAGAGGTATGGAAACCGTATGTTCCATCATCAAGAAAGATGACTATTTGATATGTTTCAATACTTCCTTAGAGGTATGGAATCGCGGCCAGTCTGCACATTATCTCGCCTCCCTTTTGAGTTTCAATACATCCTTAGAACTATGGAGAC

>NC_010483|8|8|1427022-1427251|CRISPRCasFinder
GTTTCAATAATTCCTTAGAGGTATGGAAAC	AAAATTCATATGTTAACACAAAATCGTCACTGTCGA
GTTTCAATAATTCCTTAGAGGTATGGAAAC	CGTATGTTCCATCATCAAGAAAGATGACTATTTGATAT
GTTTCAATACTTCCTTAGAGGTATGGAATC	GCGGCCAGTCTGCACATTATCTCGCCTCCCTTTTGA
GTTTCAATACATCCTTAGAACTATGGAGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010483.1|WP_012311110.1|1425116_1426094_-|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|237845
NC_010483.1|WP_011943765.1|1424401_1425112_-|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|223331
NC_010483.1|WP_012311103.1|1417903_1418296_-|hypothetical-protein	unknown	unknown	unknown
NC_010483.1|WP_012311119.1|1437300_1438071_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|130314
NC_010483.1|WP_012311114.1|1430361_1432512_+|DUF2194-domain-containing-protein	unknown	unknown	gnl|CDD|378327
NC_010483.1|WP_012311117.1|1435036_1435873_+|hypothetical-protein	unknown	unknown	unknown
NC_010483.1|WP_012311118.1|1435805_1437212_-|GT4-family-glycosyltransferase-PelF	unknown	unknown	gnl|CDD|340841
NC_010483.1|WP_012311115.1|1432501_1433878_+|exopolysaccharide-Pel-transporter-PelG	unknown	unknown	gnl|CDD|226717
NC_010483.1|WP_012311111.1|1427620_1428037_+|hypothetical-protein	unknown	unknown	unknown
NC_010483.1|WP_012311109.1|1423532_1424417_-|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl|CDD|235107
NC_010483.1|WP_012311108.1|1422885_1423536_-|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl|CDD|223366
NC_010483.1|WP_012311116.1|1433874_1435071_+|GAF-domain-containing-protein	unknown	unknown	gnl|CDD|376570
NC_010483.1|WP_004081875.1|1422182_1422884_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	unknown	unknown	gnl|CDD|132571
NC_010483.1|WP_012311120.1|1438075_1439059_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|213232
NC_010483.1|WP_012311106.1|1419791_1420952_-|diaminopimelate-decarboxylase	unknown	unknown	gnl|CDD|273415
NC_010483.1|WP_012311107.1|1420961_1422167_-|aspartate-kinase	unknown	unknown	gnl|CDD|235843
NC_010483.1|WP_012311104.1|1418292_1418703_-|transcriptional-repressor	unknown	unknown	gnl|CDD|223806
NC_010483.1|WP_012311105.1|1418717_1419791_-|amidohydrolase	unknown	unknown	gnl|CDD|349882
NC_010483.1|WP_012311113.1|1429389_1430361_-|endo-alpha-1,4-polygalactosaminidase	unknown	unknown	gnl|CDD|273582
NC_010483.1|WP_148202950.1|1439195_1439348_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010483.1|WP_012311110.1|1425116_1426094_-|aspartate-semialdehyde-dehydrogenase	gnl|CDD|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	3.95728e-153
NC_010483.1|WP_011943765.1|1424401_1425112_-|diaminopimelate-epimerase	gnl|CDD|223331	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism].	1.96771e-70
NC_010483.1|WP_012311105.1|1418717_1419791_-|amidohydrolase	gnl|CDD|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	4.37527e-135
NC_010483.1|WP_012311119.1|1437300_1438071_-|ABC-transporter-permease	gnl|CDD|130314	TIGR01247, drrB, daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	3.10296e-87
NC_010483.1|WP_012311114.1|1430361_1432512_+|DUF2194-domain-containing-protein	gnl|CDD|378327	pfam09960, DUF2194, Uncharacterized protein conserved in bacteria (DUF2194). This domain, found in various hypothetical bacterial proteins, has no known function.	3.61879e-144
NC_010483.1|WP_012311118.1|1435805_1437212_-|GT4-family-glycosyltransferase-PelF	gnl|CDD|340841	cd03813, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes.	0
NC_010483.1|WP_012311115.1|1432501_1433878_+|exopolysaccharide-Pel-transporter-PelG	gnl|CDD|226717	COG4267, COG4267, Predicted membrane protein [Function unknown].	8.2066e-176
NC_010483.1|WP_012311116.1|1433874_1435071_+|GAF-domain-containing-protein	gnl|CDD|376570	pfam01590, GAF, GAF domain. This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.	0.002046
NC_010483.1|WP_012311109.1|1423532_1424417_-|4-hydroxy-tetrahydrodipicolinate-synthase	gnl|CDD|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	1.64267e-165
NC_010483.1|WP_012311108.1|1422885_1423536_-|4-hydroxy-tetrahydrodipicolinate-reductase	gnl|CDD|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	9.48176e-91
NC_010483.1|WP_004081875.1|1422182_1422884_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase	gnl|CDD|132571	TIGR03532, DapD_Ac, 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. This enzyme is part of the diaminopimelate pathway of lysine biosynthesis. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.	1.0053e-119
NC_010483.1|WP_012311120.1|1438075_1439059_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|213232	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein. DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	5.415e-150
NC_010483.1|WP_012311106.1|1419791_1420952_-|diaminopimelate-decarboxylase	gnl|CDD|273415	TIGR01048, Diaminopimelate_decarboxylase, diaminopimelate decarboxylase. This family consists of diaminopimelate decarboxylase, an enzyme which catalyzes the conversion of diaminopimelic acid into lysine during the last step of lysine biosynthesis. [Amino acid biosynthesis, Aspartate family].	0
NC_010483.1|WP_012311107.1|1420961_1422167_-|aspartate-kinase	gnl|CDD|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NC_010483.1|WP_012311104.1|1418292_1418703_-|transcriptional-repressor	gnl|CDD|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.20648e-34
NC_010483.1|WP_012311113.1|1429389_1430361_-|endo-alpha-1,4-polygalactosaminidase	gnl|CDD|273582	TIGR01370, Uncharacterized_protein_DR_0705, extracellular protein. Original assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by but challenged by and by subsequent discovery of the actual mechanism for synthesizing Cys-tRNA in species where a direct Cys--tRNA ligase was not found. Lingering legacy annotations of members of this family probably should be removed. Evidence against the role includes a signal peptide. This family as been renamed "extracellular protein" to facilitate correction. Members of this family occur in Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal). A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases. The function remains unknown. [Unknown function, General].	1.1381e-170

Protein sequences

>NC_010483.1|WP_012311110.1|1425116_1426094_-|aspartate-semialdehyde-dehydrogenase
MKVGVVGATGEVGRTMVKVLEEFNVPVTELRLFASERSVGKEIEFKGEKFKVELLTEESMKWKCDYLLFSAGASVSRKFAPIAAENGVTVIDNSSAFRMEKEIPLVVPEVNAHLLKGYTGIIANPNCSTIQMILSIYKLHEVYGIEEIFVSTYQSVSGAGHKGIEELLAQERGENVMKVFPKPIHRNVIPLIGDIQENLFSQEEMKMVNETRKILNDYSIRVYPTTVRVPVLYGHSEAIMVRFKKPYESLEKVREVIASGEDVVVTDDLITPVDVAGKNETYVCRLRAADERSILFWNVADNIRVGAATNAVRILLKHAEMNGKV
>NC_010483.1|WP_011943765.1|1424401_1425112_-|diaminopimelate-epimerase
MCYSANGNTFLIVDNTQKRIPEEKKPDFVRENVGDLDGVIFVELVDGKYFMDYYNRDGSMAAFCGNGARAFSQYLIDRGWIKEKEFTFLSRAGEIKVIVDDSIWVRMPGVSEKKEMKVDDYEGYFVVVGVPHFVMEVKGIDELDVEKLGRDLRYKTGANVDFYEVLPDRLKVRTYERGVERETKACGTGVTSVFAVYRDKTGAKEVKIQVPGGTLFLKEENGEIFLRGDVKRCSEE
>NC_010483.1|WP_012311109.1|1423532_1424417_-|4-hydroxy-tetrahydrodipicolinate-synthase
MFRGVGTAIVTPFKNGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIKEANPDIDQIDRMVSLTKQARSDFMVWSGNDDRTFYLLCAGGDGVISVVSNVAPKQMVELCAEYFSGNLEKSREVHRKLRPLMKALFVETNPIPVKAALNLMGFIENELRLPLVPASEKTVELLRNVLKESGLL
>NC_010483.1|WP_012311108.1|1422885_1423536_-|4-hydroxy-tetrahydrodipicolinate-reductase
MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVEELGSPDVVVDFSSPEALPKTVELCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVLEDWDVEIVETHHRFKKDAPSGTAILLESALGKSVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKAAEFLVGKDPGMYSFEEVIFGGE
>NC_010483.1|WP_004081875.1|1422182_1422884_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-acetyltransferase
MDAREIIEMIAKAKKKTPIVAYIKGDLAGIDFSSFKFFGDERFGILFGEYEDFKKLLEEHREKIEDYHLEVKARNSALPLADLTKYKARIEPGAIIRDMVEIGEGAVIMMGAVINVGAVIGEGTMIDMNAVVGGRAIIGKKCHIGAGAVIAGVIEPPSAKPVVIEDEVLVGANAVILEGVTVGKGAVVAAGAVVTKDVPPYTVVAGVPARVIKQIDEKTKEKTKIVDELRNLE
>NC_010483.1|WP_012311107.1|1420961_1422167_-|aspartate-kinase
MNVVVQKYGGSSVATPERIKNVAQRIKKKVDEGYKVVVVVSAMGKTTDNLIKLAKEISPRPDSRELDMLLATGEQVSAALLSMALKDFGVKAKSLNAFQVKIKTTPHHTSARIVDIDDSVIRENLKDYDVLVVTGFQGVNEHGDLTTLGRGGSDTSAVALAAKLRVPCEIYSDVDGIYTCDPRVHPRAKKLAYITYDEALELTALGAKVLHSRSVEIAKKYGIPIYCASSFTEEEGTMVVERLPEWLEEPVVTGATISHGQIKVSISFLPKDVKYITAIFEEVGKRALNVDMISLVPSNGKVFLSFTILEDHKEDLDEALKEALRDVEGWKSTYEGGFAKLSIVGVGMRTSPGVAARFFEALERAGVTPELVTTSEIKISCLVPEEKAEKALKSVIEEFEL
>NC_010483.1|WP_012311106.1|1419791_1420952_-|diaminopimelate-decarboxylase
MDILRKVAEIHGTPTYVYFEETLRKRSRLVKEVFEGVNLLPTFAVKANNNPVLLRILREEGFGMDVVTKGELLAAKLAGVPSRSIVWNGNGKSRDQMEYFLREDVRIINVDSFEEMEIWKELNPEGVEYFIRVNPEVDAKTHPHISTGLKKHKFGIPLEDLDSFMERFGSMNIRGLHVHIGSQITRVEPFVEAFNKVVRASERYGFEEINIGGGWGINYSGEELDLSSYREKVVPALKRFKRVIIEIGRYIVAPSGYLLLRVVLVKRRHNKAFVVVDGGMNALIRPALYSAYHRIFVLGKQGKEMRADVVGPLCESGDVIAYDRELPEVEPGDIIAVENAGAYGYTMSNNYNSTTRPAEVLVGENGRISLIRRRETEMDIFKDVVM
>NC_010483.1|WP_012311105.1|1418717_1419791_-|amidohydrolase
MNEIELRHILHMNPELSFKEYNTKETLRRAVIEIGYDKIIEVAGTGLVIEKKETEDPYVVLRADMDALPIKEETGWEFASRNEYMHACGHDFHMSALYGAMKRLRNVKKNFLFVFQPAEETGGGAKKVVDFLRYRYEIKAAVGFHVTDEYDAGTVASRPGVLFASATEFDVYFKGVPAHVAFAEKGKDALKTAVSFLGWLYNKKWNALVGVGKISGGRARNIVPDEIKLEGTIRSEALRITEEVISDMVKQLGELKEETGVGFAVERGSVYPEVRVNQNLFETLRATCQRLGFSFVECDMKWTGEDFGYFSQVFPSLSFWFGVGEGERFGLHHPRFLPNDRYIPMAADLLAELAMVI
>NC_010483.1|WP_012311104.1|1418292_1418703_-|transcriptional-repressor
MTTDEIIERLKSKKVKLTTQRMEIIKFVSEMKEGHFEAKEIFAVLSKKIPSLSIATLYSVLYLLVDLGVIYAFSDGQKTIFDFNPEPHGHFICRECGKIEDVEIRELKLGEIKGKREKIELVIKGVCEECLKKVKD
>NC_010483.1|WP_012311103.1|1417903_1418296_-|hypothetical-protein
MRYLAQLFSLLLVIIGILGLVVWAGLYFLAPYIEGFAGIKLPENIANVLLACFLPILGSGVLLNFYTSSGIKWFVVSGFVVLSVSFVSEIYGLYVLRGIFSKIALAYLIFLLFTMVSLAYFLTIIRRDED
>NC_010483.1|WP_012311111.1|1427620_1428037_+|hypothetical-protein
MVLDPHPDVGLYASEAIGKIESHFSAVEKSFQEIIENLNENNYEVALDYIRSGFLEGRVGSFYKNLLLEKLKNPPDESPGFFILHYEVRGDVSILMEVFLKTKSQEIYRLLLKELLRLGDYKRLNFLLRKSFETSKDE
>NC_010483.1|WP_012311113.1|1429389_1430361_-|endo-alpha-1,4-polygalactosaminidase
MSHLKNILSIIIVSLFFISSCSTVMSTEGWFMPFDNWLYQLQNADPVEISSSGFEIAVIDYSKDGSESGEYSPEEIKIMVDAEVIPVAYVNIGQAEDYRFYWKESWYTNTPEWLGEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRSAARKMINFVLEIAEYVRERKPDMLVILQNGESILDFDDGQLVSVVSGWAVENLFYLKTTPLEENETRSRLEYLIRLNREGKFILSVDYVDDGSDSFENISRILDYYEKAKRNGCIPYAARSDLELDEMNVIEGIQPPEAVKDYESRTYR
>NC_010483.1|WP_012311114.1|1430361_1432512_+|DUF2194-domain-containing-protein
MRKFLLLILVLLAFPFFSKTLLLYKGSEGGYGYNILSWLAPELEVLGEDYEFVDVEKSLPDFEDYDFVITCYYSSSMPGAKKYLKKLVDFLLNGGKLFIINNLGAFEDSSGDNPSLSDINSLLNLLGVSFRYGWRQETVFSYEIEDGYLIKLPSLPVKKAFDGFEVFSSNVKIVSYAVTEKGKHPVIFYGPFGGMALFDHAFNENGKPVVDLRKIVKDIVVGYRENKVLMLGENHHIRKIFEYALFEVDSSRSGVLQKYRAIVIPNVSFLEEKEIKSYLENGGVVILVGSGAHYIRGEVVLEKENLYIPQDITVGERKVGYIPAPENAKAFITINGTPVSWMEKREKGAFVFFPEDLLGKWSRGILFNEFLEASDFVISPMVNAFSVFLDDFPLPAYGIEYDILGTTDEIFYYKIWWRDMKELCEDFSIKPITALVTSYEQKTNYDGFFEFLQKSSSIKILKNLIEDEGVDTGIHGYNHVPPKSENWDLEELGKAYKSLRIFLSQLSSSYEPVAFVAPNNEIDQSGIEVLKSVFPTIKVIGTAYSLEDSTGEFTLLDDVLILPRTTSGCYPLQRLLMETVSTLLNLGTYHHFSHPDDVISLDRNPERYSWNEMFDQLRSFFRIMKENYPWLRNMDSKELYNTFKDYFENKPRILYHDKKIVIVLPRTAELPRYFFLKAKGDVNVHGGVILFRDKDLCVVEMRKYKMEISEVIEDGR
>NC_010483.1|WP_012311115.1|1432501_1433878_+|exopolysaccharide-Pel-transporter-PelG
MAGKSFDLLFSRNNLFSDVLAFFYSTFVYFAPWLVVLFYIIWSSRWFSTSPFFLSVLSYSLIFSMIIAGGMSFLISRFLANCIYSRDQRKIYESYIGAVLLVFSVSLVIGLIFFAVNDQYSLVQKILACYTFVGFSLVWILMQFASVTEKESLAVLAFAGGIVVSVLLARFWDISMEEKLLLTLDIGIGLIIFMLNFLILSYLRSSIRIGFDFLLLTRKHPQLLFIGYFYYLSIWIDNFIAWKVKGIEIAPGFFMSPEYDIPKFMASLFFIPSLVVFNLSMETVFQRNYKGLMQSIVSDKPMRVISENLKKLSLSLRHAFSNMFALNMVAMISCFLLRDSLRLWFNLSESFNRIFVWDVVGVSMNIAFMSLLVASLHFEYYGIALEGTALVLTSNMILSVFFIENIPGLSFAVAFSGGFLYLLLRFKSKDFLYEVYTKQPLGLEKVKKTSWKPKEMIR
>NC_010483.1|WP_012311116.1|1433874_1435071_+|GAF-domain-containing-protein
MKPRKKSWFVEVLISYGIVFLFDYLYKTDVFKESFLNFYWIPLLIFCVRYDLVVHVFSSILFFTFIVVSKFLSEEGLNFSSDFALANSIMLVISTVLSLINEVRVKNMERLSLELAYRNEDVSRLEEEVRKLKKQINSLDQKLFYESAGISSLLIELREIFTEDFEKFAQRFVEIVSEYFDVKRMYVYRYKDGFLRLAAGIGRPELGFSLKKGVSLVVDKALQEGVGRILDVIDQVKSSNEPWLAVRIGDGENILGVITVEETATDNLELVEEYLTALAAWIHIVMRKLEFEKYEKYRLKDGTFPADFYETEKNRLKVLEAQHGIPFIEVCVRIKREELGKLLKILRRNDLATKMSEDGEYLLLKLLFPLCDEIGFNIIKKRLESEISEVEIVDCESH
>NC_010483.1|WP_012311117.1|1435036_1435873_+|hypothetical-protein
MKSKLWIVNLINFALGVLNIGLLFQGENPFFIMILCLNLVISFLVNRDVSQIVIAIMTYPLGLVVPLKKKKLRFEEVEKPQKVERINLMKRSFKESIFFGQDEDKKRSILRLSEDVEKGKVPPERLISASKRLMKNSGVDVGLYTTESIERVEKSFEKEEEILLNIENLDGESEELYKRVWDYLEADFVSGKLKEYYRFLLLDRLKLLDKDERYFIMKYRVEQNLEVLWEGLKQTRSPLIYRTLLFELLKRRNYPELRQLKLFFSKSEKDKDSGTSQS
>NC_010483.1|WP_012311118.1|1435805_1437212_-|GT4-family-glycosyltransferase-PelF
MKIGLILEGTYPYVTGGVSNWVHTLLTNLPEFEFEIYHLKAVTEPQTIKYKIPENVTAVHELNIFGDFESNSAQKANLESLERIISQLSFGRDTRSIVPLAIDFIRENAGKNVRKMLKTKGFWNVLLKIYEEFFSERGLTEFYWMIMNLFLPVVNVLQFVPNRCDLFHVPSTGYASLVGVNGKFVHDVPLVITEHGIYHKEREREIILSTWVPDAYKPMWIELFRIISMIAYRVSDALITLYRKNQIYQLELGADPEKMFIIPNGINVEEYDLPPEKHEGFVVGFVGRVARIKDLKTAIRAISIVKEVVGEKLKFLIIGPVDAEDYLAECKRLVRVLRLEDTVEFLGPQNVKEYYPKFDLLLLSSVSEGQPLVILEAMAAGVPIVATDVGACRDIIYDKDGQCGIIVPPKDHFSMSKAIIKLYEDKELRDTFSKNAKKVVQKYRVETMIEKYRNLYLSLTSKKTVSTV
>NC_010483.1|WP_012311119.1|1437300_1438071_-|ABC-transporter-permease
MAAFVTMIYRQFMRFLRSRSRVIGMIINPLIWIIFFGLGWSKVFDNPWARMMFGGVDYLTYLAPGIFAMTVFNMSFISGVSLIWDKQFGFFKEVLVAPSSRRLSITGRIVGDAIVTVLQGLIILVFNYFLAESLKISGLLPALAVGFLMSVTIASFGIALALKMESTEGFQMIMMTLMMPLVFLSGAMYPIDSMPNWMKALAYINPLTYAVDASRGYLVGEKVMKFSFGLDWGILSILMLVGLILAMESFERARIS
>NC_010483.1|WP_012311120.1|1438075_1439059_-|ATP-binding-cassette-domain-containing-protein
MEDIIVVENLVKKFGDFEAVKGVSFSVKKGEVFAFLGPNGAGKTTTIHMLTTLLKPTSGKAWVAGHDVLKEPREVRRKIGIVFQDQSLDRELTAYENMYIHGKIYGYGGEKLKKRILELLEFVELLEFKDKPVKTFSGGMARRLEIARSLIHEPEVLFLDEPTIGLDPHTRAHIWEYISKMKKEHNMTIFLTTHYMDEAEQLADRVAIIDHGKIIALGTPTELKRMVGKEIIYVRFSETVECLEGDFIESCRKLPDGRLELNVEDSGRAIPKIFELAQQKGLKIEEITYHKPTLNDVFLHLTGRELREEGPENSFKTMARMRMRMRR
>NC_010483.1|WP_148202950.1|1439195_1439348_+|hypothetical-protein
MERVRDFFVLLFCVLLFTYEFLALNVRIMFRSVKKKKSRETTPGFKFPVP

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010483_5	5.31|1064041|35|NC_010483|CRISPRCasFinder,CRT	1064041-1064075	35	NZ_CP017904	Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence	233001-233035	6	0.829
NC_010483_5	5.31|1064041|35|NC_010483|CRISPRCasFinder,CRT	1064041-1064075	35	NZ_CP017901	Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence	238657-238691	6	0.829
NC_010483_5	5.31|1064041|35|NC_010483|CRISPRCasFinder,CRT	1064041-1064075	35	NZ_CP017909	Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence	235221-235255	6	0.829
NC_010483_5	5.31|1064041|35|NC_010483|CRISPRCasFinder,CRT	1064041-1064075	35	NZ_CP017893	Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence	224550-224584	6	0.829
NC_010483_5	5.31|1064041|35|NC_010483|CRISPRCasFinder,CRT	1064041-1064075	35	NZ_CP017898	Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence	238022-238056	6	0.829
NC_010483_1	1.10|544811|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT	544811-544845	35	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5392555-5392589	8	0.771
NC_010483_4	4.23|975978|35|NC_010483|CRISPRCasFinder	975978-976012	35	NZ_CP032095	Vibrio alfacsensis strain CAIM 1831 plasmid pVa1, complete sequence	164197-164231	11	0.686
NC_010483_4	4.23|975978|35|NC_010483|CRISPRCasFinder	975978-976012	35	NZ_LT985217	Escherichia coli strain 715 plasmid RCS103_p, complete sequence	8865-8899	11	0.686
NC_010483_4	4.77|975979|35|NC_010483|PILER-CR	975979-976013	35	NZ_CP032095	Vibrio alfacsensis strain CAIM 1831 plasmid pVa1, complete sequence	164197-164231	11	0.686
NC_010483_4	4.77|975979|35|NC_010483|PILER-CR	975979-976013	35	NZ_LT985217	Escherichia coli strain 715 plasmid RCS103_p, complete sequence	8865-8899	11	0.686

1. spacer 5.31|1064041|35|NC_010483|CRISPRCasFinder,CRT matches to NZ_CP017904 (Vibrio alginolyticus strain K05K4 plasmid pL289, complete sequence) position: , mismatch: 6, identity: 0.829

aaataatcgtgctgataatccgtcggtac--gaaatc	CRISPR spacer
acataatcgtgctgctaatctgtcggttcttgaaa--	Protospacer
* ************ *****.****** *  ****  

2. spacer 5.31|1064041|35|NC_010483|CRISPRCasFinder,CRT matches to NZ_CP017901 (Vibrio alginolyticus strain K04M5 plasmid pL294, complete sequence) position: , mismatch: 6, identity: 0.829

aaataatcgtgctgataatccgtcggtac--gaaatc	CRISPR spacer
acataatcgtgctgctaatctgtcggttcttgaaa--	Protospacer
* ************ *****.****** *  ****  

3. spacer 5.31|1064041|35|NC_010483|CRISPRCasFinder,CRT matches to NZ_CP017909 (Vibrio alginolyticus strain K06K5 plasmid pL291, complete sequence) position: , mismatch: 6, identity: 0.829

aaataatcgtgctgataatccgtcggtac--gaaatc	CRISPR spacer
acataatcgtgctgctaatctgtcggttcttgaaa--	Protospacer
* ************ *****.****** *  ****  

4. spacer 5.31|1064041|35|NC_010483|CRISPRCasFinder,CRT matches to NZ_CP017893 (Vibrio alginolyticus strain K04M1 plasmid pL280, complete sequence) position: , mismatch: 6, identity: 0.829

aaataatcgtgctgataatccgtcggtac--gaaatc	CRISPR spacer
acataatcgtgctgctaatctgtcggttcttgaaa--	Protospacer
* ************ *****.****** *  ****  

5. spacer 5.31|1064041|35|NC_010483|CRISPRCasFinder,CRT matches to NZ_CP017898 (Vibrio alginolyticus isolate K04M3 plasmid pL294, complete sequence) position: , mismatch: 6, identity: 0.829

aaataatcgtgctgataatccgtcggtac--gaaatc	CRISPR spacer
acataatcgtgctgctaatctgtcggttcttgaaa--	Protospacer
* ************ *****.****** *  ****  

6. spacer 1.10|544811|35|NC_010483|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.771

acaacagcgaagtcgtcgtcgaccgtcatcactat-	CRISPR spacer
acaacagcgccgtcgtcgtcgaccg-cagcggggtg	Protospacer
*********  ************** ** *.  .* 

7. spacer 4.23|975978|35|NC_010483|CRISPRCasFinder matches to NZ_CP032095 (Vibrio alfacsensis strain CAIM 1831 plasmid pVa1, complete sequence) position: , mismatch: 11, identity: 0.686

cagaatcaactcgaagaccttcagcaaacaacagc	CRISPR spacer
ttctgccaactcgaatatcttcagcaaacaaccca	Protospacer
.   ..********* *.**************   

8. spacer 4.23|975978|35|NC_010483|CRISPRCasFinder matches to NZ_LT985217 (Escherichia coli strain 715 plasmid RCS103_p, complete sequence) position: , mismatch: 11, identity: 0.686

cagaatcaactcgaagaccttcagcaaacaacagc	CRISPR spacer
cagaatgaacccgaagaccttcagcccggtggaat	Protospacer
****** ***.**************  .  . *..

9. spacer 4.77|975979|35|NC_010483|PILER-CR matches to NZ_CP032095 (Vibrio alfacsensis strain CAIM 1831 plasmid pVa1, complete sequence) position: , mismatch: 11, identity: 0.686

cagaatcaactcgaagaccttcagcaaacaacagc	CRISPR spacer
ttctgccaactcgaatatcttcagcaaacaaccca	Protospacer
.   ..********* *.**************   

10. spacer 4.77|975979|35|NC_010483|PILER-CR matches to NZ_LT985217 (Escherichia coli strain 715 plasmid RCS103_p, complete sequence) position: , mismatch: 11, identity: 0.686

cagaatcaactcgaagaccttcagcaaacaacagc	CRISPR spacer
cagaatgaacccgaagaccttcagcccggtggaat	Protospacer
****** ***.**************  .  . *..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1036472 : 1044415	10	Staphylococcus_phage(37.5%)	transposase,protease	NA
DBSCAN-SWA_2	1204316 : 1211929	10	Bacillus_phage(33.33%)	NA	NA
DBSCAN-SWA_3	1568934 : 1586854	16	Bacillus_phage(25.0%)	NA	NA
DBSCAN-SWA_4	1732233 : 1740952	8	Powai_lake_megavirus(16.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_010483|1036472:1044415|DBSCAN-SWA
TATGCATATCAAGAAGACAAGGTGGAGTCATTATAATCTGAACTATCATTTTGTGTGGATACCTAAATACCGCAGAAAAATCCTGGTCGGCTCCATAGCTGAAGAACTTGAACGAATACTCCGCAACACAGCAAAACAACACGGAATAGAAATACTGGCCCTCTCTATTCAGCCTGATCATGTTCATTTGTTTGTATCGGCGCCTCCGAGATTTTCACCGGCTGAGATAGCAAACCTACTCAAGGGTGTTTCAGCGAGGAAACTGCTGGAGAAATTTCCAGAGCTTAGAACCAAAGAGGGCCTTTGGGCTCGAAGTTACTACGTTGGAACAGCCGGTAATGTTTCTGAAGAAACTATCAGGAGGTACATCGAGGAATGTCAAGACGTGTGATACGAACCTACAAACTCGCTGTACCAGGACATTTGAATCAAATATGCGAAGAACTCAACCGCACAGCAGCAAGAATCTACAACAAAACGATGTCTCTTGTGCGAAAGATACACCAAAAGAAAGGCTTCTGGCTGTCCTGGCCTGCCGCAGACAAATACATCCTCCGCTGGGCAGAAAACATCAAAATCCACGTCCACTCAAAGCAGGCATTTGTTCAGCTCTACTTTCAAGCCCTCAAAGGGTACTTCAAAGCAACCAAAAAGAATCCAGATGCAAAACCTCCCCACAAGAAAAAACGCTATCTGCCGTTCATATGGAAAGAAAGCGCTGTAAAACTTCTGCCAGACGGCACCCTGAGATTGTCTTTGGGCAAAGAACGAGAACCATTTGTTGTACAAACACCTCTCAAACCTCCCCTTCGCATCAAACAGACAAGACTTGTCTTTGAAGATGGATACTATCTCCACCTTGCGATAGAGGTGGAGATTGAAGAGAAGAATGCTGGCTCTGGTGTTATGGCGGTCGACCTTGGAGTGCTCCGTCCCATTACGTGCTTTGATGGAAAAGAAGTCATCAGCTACCACGGAGGAGTCCTCAGCAGTGTTCTTCGCTATCGAAACAAACGCCTTGCAAGTTTTCAGTCTGCCATAGCAGAGTGCAAGAAGGGATCAAGAAGGTACAACAAGCTTGTTAGTGCAAAGAAAAGAGCCCTGAGACGGCTCAGAAACCAGATCAACGACATCATGCACAAGATCACAAGCAGTTTCATCGGACTGTGCCTCAGAAAACAAATCAGAACCATCGTGATAGGAGACGTCACAGGGATCAGAGAAAGAGCAGACTACAGCGACAACGCGAACCAGAAGATCCACCAGTGGCAGTTCAGAAAACTCATCGAGATGATAAGGTACAAAGCAGAGCAGTTCGGAATCGAAGTGGAACTCATTTCAGAAGCGAACACGAGCAAGACGTGCCCTGTCTGTGGTGCAAAGAACAAGCCGAATGGAAGAAGATACCACTGCAAAGCCTGTGGTTTTGAGTATCACAGGGACGGAGTTGGAGCAATCAACATCTGGAAAAGGTATCCTGGCACAGGCCAGGTAGTAGCGGGCTTGGCCCCCGCCAGAGGTGTGAGGTTTCATCCACACCTCTGTGGCCATGGAGCATCTTTGGCTCCATGGAAGGTGGCCTGAGAGCCACCAAGAATCCCATCCCCTTCAGGGGATTGGGAGGAGGTCAAGTGATTGCGAGGTGGGGTGGAGAAGAGTTTTTGATCCTCTGTCCTGAAACGAAGTTGAACGAAGCGGTGAGCCTCGCTGAGAGAATCAGGACTAAGATCGAGAAAGAAGTCTTTGAAAACGGCTTGAATGTAACCGTGAGTATCGGTGTTTGCGAAATGAAAGATCATGAGACAATAGACGATCTTCTCAAAGAAGCAGACGATAACCTCTATCTGGCAAAACAGCGTGGAAAAAACAGAGTGATCGGCAGATGAAGTTAAAAGATCTGTTCACCTTCTGGAAATAAATCCTTGATAGAATGGAGAAAACTGAATACAAAAGAAACGCTCTCGGGGCAGGGTGGAATTCCCGACCGGCGGTGAAAGCCCGCGAGCCCTCTCAGGAGGGTTGACCCGGTGGAATTCCGGGGCCGACGGTGAAAGTCCGGATGGGAGAGAGCGTGATGTGGAGATTATATGGGACCCGAGAGGGTCCCTTTTCTTTTACACAGGGAGGGTGTTGTATGTATGAAACTTTCATGAAAAGAGCGATAGAGCTTGCAAAGAAAGGACTTGGAAGGGTGAATCCCAACCCACCAGTTGGTGCGGTCGTTGTGAAAGACGGCAGGATAATCGCGGAGGGTTTTCATCCCTATTTTGGAGGTCCGCACGCTGAAAGGATGGCAATAGAAAGTGCAAGAAAGAAAGGAGAAGATTTACGAGGTGCAACTCTCATAGTTACCCTTGAACCCTGTGATCATCATGGAAAGACACCTCCATGCACGGATCTGATCATAGAAAGTGGAATAAAAACCGTTGTGATTGGAACAAGGGATCCAAATCCTGTTTCGGGAAACGGTGTGGAAAAATTCAGAAATCACGGTATTGAAGTGATAGAAGGTGTTTTGGAAGAAGAGGTGAAAAAGCTGTGTGAGTTTTTCATCACTTATGTGACAAAGAAAAGGCCGTTCGTTGCGCTGAAGTACGCGTCCACCTTAGATGGGAAAATAGCTGATCACAGAGGAGATTCCAAGTGGATCACAGACAAACTCAGATTCAAGGTTCACGAGATGAGAAACATCTACTCTGCTGTTCTCGTCGGTGCTGGAACGGTTTTGAAGGACGATCCCCAGCTAACCTGCAGACTGAAAGAAGGCAGAAATCCTGTGAGGGTGATCCTCGACAGAAAGGGTGTTTTGAGTGGGAAAGTGTTCAGAGTGTTCGAAGAAAACGCTCGGGTGATCGTTTTCACAGAAAGTGAAGAGGCGGAATATCCACCACACGTGGAGAAGGCCCTGAGCGATTGTTCTGTGGAGAGTATATTGAGAAATCTGTATGAAAGGGATATCGATTCTGTCTTGGTGGAGGGTGGATCGAAGGTGTTCAGCGAATTTTTGGATCACGCAGATGTGGTTTTTGGTTTTTATTCGACGAAGATTTTCGGAAAGGGGCTTGATGTCTTCTCCGGTTATCTGTCAGATGTTTCGGTTCCTCCGAAGTTCAAAGTGGTGAACGTGGAGTTTTCCGATTCGGAGTTTCTGGTGGAGATGAGAACGTGTTCACGGGAATAGTTCAGAAGGTGGAAAGAGGATACATCAGGGGAGAGAGGATCTTCTTCAAAAGAACGTGGGAAGTGAAACTGGGAGAGAGTATAGCGGTGAACGGTGTGTGTCTGACTGTCTCCGGGCTTTCAGAAGAAGAATACTGGTTCGATGTGGGTGAGGAAACGAGGAGGAGAACCAATCTTTTCGTTTCTCGTTTTTACAATCTTGAAAAATCTCTGGCTCTCGGTAGCAGAGTTGAAGGACACTTGGTGACGGGTCATGTAGACGGTACCGTCAGGTTTGTCGGAATGGAAAGGCGCGGAAACAGCTATTTCATGTTCTTTTCGATGCCGTCGGAAAGATGGGCGATCGTTCCAAAAGGTTCTATCACGTTGAACGGTATCAGCCTCACCGTCGTTGAAACTTCTCTGGACACGTTCAGTGTTCAGGTGATCCCACACACGTTCGAGAACACGAACCTCCAGTATCTGGTGCCCGGAGATCCCGTTAACTACGAGATCGATATCATCGCTCGCTACCTGAAAGGGGTGATAGACCGTGGAAGAACTGAGAGAGGCTTTTGAGGAAGGAAAGCCCGTCATTTTGATCGACAGAAATAGAGAGAACGAAGCGGATTTCGTTTTTCCCGCTCAATTGATCACCGAAGACGTTGTGAACTTTTTCGTCACATACGGGAAGGGACTCTTCTGCGTTACAGCCGACGAGGAAGATCTTTTGAAGAGAGGGTTCGTAAAACTTTCCTCGAACTACGGAGCGAACTACTTCGTGCCGGTGGACTGGGGCACTGGCACGGGGATTTCAGCGTTGGAGAGGGCAGAAACGTGCAGAAAGTTGGCAGAAGGCAGGTATTTTCATGAGTTCAGATACCCGGGTCACGTCACGGTGATAGGAGGAATCGGTTTCCAGAGACGAAAAGGACACACGGAGGCATCTCTGGAAATTTCTGAGCTCGCGGGCTTCAGCCGTCACGCCGTGATCGTGGAAATTCTGGATGAGAAGGGAAATTCTCACAATTTGGATTATGTTTTGAAGCTCTCAGAAAAATTTTCCCTCCCCGTTCTGGAGATGGACGATGTCTGGCGTGAATTTGTGAAGAGAAAGCTTCTCATGAAGAAAAAAGCAGAAGCAACACTTCCAACGGATTTCGGTGTCTTCAAGGTTGTTTCTTTCGAAAACCACCTCGATGGCAAAGAACACTTCGCAATCGTTAAGGAACCTCTCGAAGATCCCGTTGCTGTGAGAATACACTCCGAATGCGTGACCGGGGATGTTCTCTCTTCTTTGAGGTGTGACTGCGGTTCACAGCTGGCGAATTTTCTCAGATACATGTCAGCTCACGGAGGTATCCTGATCTATTTGAGACAGGAAGGGAGAGGAATCGGCCTTTCGAACAAAATTGCAGCCTATTCTCTTCAGGACAAAGGTTTGGACACGGTGGAGGCAAACAGAGTTCTTGGTTTTTCTGAAGACGAAAGAGATTACGCACCGGCGGTGCAGATCTTGAAAGCCCTTGGCATCGAAAGGGTTCTTCTCTTCACCAACAACCAAAGAAAGACGGTTGGTCTTGAAAAATACGGGATCGAAGTTGTCGAAACGAAGAGACTGTACGGAAGAGTAACACCTCACAACAGGTTCTATCTTTCGACAAAAATGAAAAAGCTCGGACACGAACTCGAAGAAATCTTCAGGGAGGTGAATTCATGAAGGTTGTTCAGGGAGACTACAGAGGAGAAGGTTTGAAGATAGCCGTAGTCGTTCCTAGGTTCAACGACCTTGTCACTTCGAAACTCCTCGAGGGAGCGCTCGACGGGCTGAAAAGACACGGTGTCTCAGACGAGAACATAACGGTTGTGAGAATTCCGGGAAGTATGGAAGCGATATACACGCTCAAGAGACTCCTCGATCTCGGTGTGCATGATGCTATAATCGTTCTCGGTGCTGTGATAAGGGGAGAGACGTACCACTTCAACGTGGTGGCGAACGAGATAGGTAAAGCAGTGGCGCAGTTCAACATGACCTCTGATATTCCTATTGTTTTCGGCGTTCTCACCACGGACACCCTTGAACAGGCCCTCAACAGAGCCGGAGCAAAGAGTGGAAACAAAGGTTTTGAAGCAGCGATGGTAGCGATCGAAATGGCAAATCTCAGAAAGAGACTCAGGAGGGATGTTTTTGAATCTGATAGCAACGGCAGGTAACGACAGAATAAGGGACTTTCTTGTGAACGACTGGTACAGATCTCTGAAGGAAAATGTGGATCTGAGCAAAACGGACGTTCTCGTCATAAACTACGGTCTCACAGGACTTCCTAAAGAGGTTATCAACTTTCCGGCTGTGGAGCGTTCTGGACTCATAAACAACACGCGTTTCATCAATCTTGCCATTTTTCTTGAGAATCATCCTGAGTACGATCAGATCCTGTTTTGTGATGGCGGAGACATCATCTTCCAGAGTGACATCTCGCACCTATTCGAGGAACACAGAGATGCTTTTCGAGCGGTTGTGGAGCAGTTGAGTCCACCCATTGATCTCGTGGTGAAGGAAGAAGACCTTGTGAATGGAAAGGAGATAAAGTCTTTTCTTTCAAACAAAAAGCTCTTCAACGTGGGTGTGATAATAGCACCAAGGGAAGGTTTCCTCGAGCTCGCAAGAACAATGGAGAGACGTCTGAAAAACATAAACGTCTGGGGTGGAGATACTGTCATTGGAAACTACGTGATCTACAAGAACCCTCATGTGGAACTTCCTTCGAAGTACAACTTCATTCCTTCAACGGCCCGAGAAAAATTCTACGTGAAAGATTCGAAGTTCTATCTCGAAAATGGTGAGCTCATTCCCATCGTTCACAACGCTGGGAGGTACAGATTTCTCAGACCGGTGAAAGATTTCGGTTACGGCCCCGGAAAGAACAGGGTAAACAAGTTCAACATATGGATGTTCAGAATGCTCTTCAGCGTGAGTAACTTTCTGAAAATGAAGTGAGGGAACTCTCCCTTACTTCGTTTTGAGGTATTTCAGTGCATCGAGTTCGTCTCCAATTATGAGAATTCCTTTCTCGATGGATCTGTAAACCTCCATCGTTCTCCAGAATTCGTAGAAGTCCTTGTCTTTTGAAAACACCTCCGCGTAGATCTTCACCGCGCTTGCTTCTCCGGTTCCCTTGATTTGCTCTGCTTTGCTTTGAGCTTCCGCGATCAGAACCTTCGCTGTTTTGTCGGCTTCCGCACGTATCTTTCTTGCCTCTTTCTCACCTTCAGCCCTGATCTGTGCAGCGATGCTGTATCTTTCCGCTTTCATTCTTTCGTACACGGCCTTTTCGTTCTCAGCGGGGAGGTCGGCGTGCTTCACCCTCACATCGACCACTTCTATGCCGAAGTCCTTCAGATCTTCTCTTGAAAGAGCCGTGACTTCCCTCAAAAGGTCTTCTCTCTTCTCGGAGATGATCTCGTCGAAGTTCGCTTTTGCGAAGATGTTCCTCACGTGTGAGTAAACCACATCGTCGATTCTTGGAAGAGCGAGCTTCACGCTCTTCAGTGATTTTATGAACGCTTCCGCATCTTTTATCCTCCAGAGAACGTACGTGTCTATCACGAGTGTTTTCTTGTCGGCGGCTATGATCTTTTCTGGTTCTATATCGTAGAGGAGGATTCTTTTATCGAATCTCACCACATTATCAACGAACGGCTGTTTGAAGTGAAGCCCAGGTTCCGTTTCTACTGCAACGATCTTTCCGAACCTCAGAACCACCGCTTGCTGTGTCTGATCCAGGACGTAAAAAGAAGAGAAAAGAAGGATCGCACCCACCACGATCAGAATGATCAGAAGAGAAATCATCCAGATTTTCATTTTCCCATCCCCTTCAGAAGGTCGGAAATGTTGAGAATGTTCAGAGAATCACCGTTTCCCACGAAGAAAACCTTGTTTTCGGATTTTTCAAGCAAAGATTGGAGAGCGTCGAGGAGCATTCGTTTTCTCGTGATATCAGGAGCCTTTGAGTATTCTTCCAGCACCTCTTCGAATCTTTTCGCTTCGCCGAGTGCTTTCAGATAAACTTCCTGAGCGTAGGCCTCTGCCTGTCTCAGTATCTCTTGTGCCTGTCCCTGGGCTTTTGGAACAACGTCGTTGGCGTATTTTCTTGCCTCGTTTATGAGACGTTCTTTGTCCTGACGAGCGTTGTTCACATCGTCGAAGGCGTCAACAACGGGATCTGGCGGGACCACTTCCTGGAGATAAACGTTTTCCACCTTTATACCGCAGTTGTAGGAATCGAGAATCTCCTGGAGCATTTGGGCAGTTTTGAATCCTATTTCATCTCTTCCTGAGGTGAGAACGTCGTCGATGCTTCTCATCGCTACCTTCTCACGAAGAACAGATTCTGTTGTGAATCTCACGATGGAATCCGCTTCTGTGATGTTGAAGGCGTAAGCGACGGGGTCTTTCACCCTGTACTGAACCACCGCTTCCACACTCACGAGGTTGTTGTCTCCTGTGATCATTATGGCTTCTTGAGGAACCGACTGGTAAGAGATCCTCTCCCCTCGTTGAATGCTTCTGAATCCTATTTCGATCTTTCTCACAGTTGTGACGTCGACGGTCACATGAGACTGAATCGGATATGGCAGGTGGTAGTGGATTCCTGAAGGAACGACCGAGGTGAATCTTCCAAAAGTCTTGAGGAGGGTGACTTCGGAGGGTCCTACCTGATACACACCGGTGAGAAAGTAGATTCCCAGCACAATGAAAACGACTATCCACACGTATTTTCGCAC

Protein sequences of DBSCAN-SWA_1

>NC_010483|1036472:1044415|1042640_1043492_-|WP_004082369.1|protease|DBSCAN-SWA
MKIWMISLLIILIVVGAILLFSSFYVLDQTQQAVVLRFGKIVAVETEPGLHFKQPFVDNVVRFDKRILLYDIEPEKIIAADKKTLVIDTYVLWRIKDAEAFIKSLKSVKLALPRIDDVVYSHVRNIFAKANFDEIISEKREDLLREVTALSREDLKDFGIEVVDVRVKHADLPAENEKAVYERMKAERYSIAAQIRAEGEKEARKIRAEADKTAKVLIAEAQSKAEQIKGTGEASAVKIYAEVFSKDKDFYEFWRTMEVYRSIEKGILIIGDELDALKYLKTK
>NC_010483|1036472:1044415|1038605_1039652_+|WP_012310868.1|DBSCAN-SWA
MYETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKFRNHGIEVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHEMRNIYSAVLVGAGTVLKDDPQLTCRLKEGRNPVRVILDRKGVLSGKVFRVFEENARVIVFTESEEAEYPPHVEKALSDCSVESILRNLYERDIDSVLVEGGSKVFSEFLDHADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEMRTCSRE
>NC_010483|1036472:1044415|1041346_1041844_+|WP_004082371.1|DBSCAN-SWA
MKVVQGDYRGEGLKIAVVVPRFNDLVTSKLLEGALDGLKRHGVSDENITVVRIPGSMEAIYTLKRLLDLGVHDAIIVLGAVIRGETYHFNVVANEIGKAVAQFNMTSDIPIVFGVLTTDTLEQALNRAGAKSGNKGFEAAMVAIEMANLRKRLRRDVFESDSNGR
>NC_010483|1036472:1044415|1038039_1038357_+|WP_010865413.1|DBSCAN-SWA
MEGGLRATKNPIPFRGLGGGQVIARWGGEEFLILCPETKLNEAVSLAERIRTKIEKEVFENGLNVTVSIGVCEMKDHETIDDLLKEADDNLYLAKQRGKNRVIGR
>NC_010483|1036472:1044415|1036846_1038055_+|WP_012310867.1|transposase|DBSCAN-SWA
MSRRVIRTYKLAVPGHLNQICEELNRTAARIYNKTMSLVRKIHQKKGFWLSWPAADKYILRWAENIKIHVHSKQAFVQLYFQALKGYFKATKKNPDAKPPHKKKRYLPFIWKESAVKLLPDGTLRLSLGKEREPFVVQTPLKPPLRIKQTRLVFEDGYYLHLAIEVEIEEKNAGSGVMAVDLGVLRPITCFDGKEVISYHGGVLSSVLRYRNKRLASFQSAIAECKKGSRRYNKLVSAKKRALRRLRNQINDIMHKITSSFIGLCLRKQIRTIVIGDVTGIRERADYSDNANQKIHQWQFRKLIEMIRYKAEQFGIEVELISEANTSKTCPVCGAKNKPNGRRYHCKACGFEYHRDGVGAINIWKRYPGTGQVVAGLAPARGVRFHPHLCGHGASLAPWKVA
>NC_010483|1036472:1044415|1043488_1044415_-|WP_012310871.1|protease|DBSCAN-SWA
MRKYVWIVVFIVLGIYFLTGVYQVGPSEVTLLKTFGRFTSVVPSGIHYHLPYPIQSHVTVDVTTVRKIEIGFRSIQRGERISYQSVPQEAIMITGDNNLVSVEAVVQYRVKDPVAYAFNITEADSIVRFTTESVLREKVAMRSIDDVLTSGRDEIGFKTAQMLQEILDSYNCGIKVENVYLQEVVPPDPVVDAFDDVNNARQDKERLINEARKYANDVVPKAQGQAQEILRQAEAYAQEVYLKALGEAKRFEEVLEEYSKAPDITRKRMLLDALQSLLEKSENKVFFVGNGDSLNILNISDLLKGMGK
>NC_010483|1036472:1044415|1039636_1040209_+|WP_012310869.1|DBSCAN-SWA
MFTGIVQKVERGYIRGERIFFKRTWEVKLGESIAVNGVCLTVSGLSEEEYWFDVGEETRRRTNLFVSRFYNLEKSLALGSRVEGHLVTGHVDGTVRFVGMERRGNSYFMFFSMPSERWAIVPKGSITLNGISLTVVETSLDTFSVQVIPHTFENTNLQYLVPGDPVNYEIDIIARYLKGVIDRGRTERGF
>NC_010483|1036472:1044415|1041818_1042628_+|WP_004082370.1|DBSCAN-SWA
MNLIATAGNDRIRDFLVNDWYRSLKENVDLSKTDVLVINYGLTGLPKEVINFPAVERSGLINNTRFINLAIFLENHPEYDQILFCDGGDIIFQSDISHLFEEHRDAFRAVVEQLSPPIDLVVKEEDLVNGKEIKSFLSNKKLFNVGVIIAPREGFLELARTMERRLKNINVWGGDTVIGNYVIYKNPHVELPSKYNFIPSTAREKFYVKDSKFYLENGELIPIVHNAGRYRFLRPVKDFGYGPGKNRVNKFNIWMFRMLFSVSNFLKMK
>NC_010483|1036472:1044415|1036472_1036862_+|WP_012310866.1|transposase|DBSCAN-SWA
MHIKKTRWSHYNLNYHFVWIPKYRRKILVGSIAEELERILRNTAKQHGIEILALSIQPDHVHLFVSAPPRFSPAEIANLLKGVSARKLLEKFPELRTKEGLWARSYYVGTAGNVSEETIRRYIEECQDV
>NC_010483|1036472:1044415|1040183_1041350_+|WP_012310870.1|DBSCAN-SWA
MEELREAFEEGKPVILIDRNRENEADFVFPAQLITEDVVNFFVTYGKGLFCVTADEEDLLKRGFVKLSSNYGANYFVPVDWGTGTGISALERAETCRKLAEGRYFHEFRYPGHVTVIGGIGFQRRKGHTEASLEISELAGFSRHAVIVEILDEKGNSHNLDYVLKLSEKFSLPVLEMDDVWREFVKRKLLMKKKAEATLPTDFGVFKVVSFENHLDGKEHFAIVKEPLEDPVAVRIHSECVTGDVLSSLRCDCGSQLANFLRYMSAHGGILIYLRQEGRGIGLSNKIAAYSLQDKGLDTVEANRVLGFSEDERDYAPAVQILKALGIERVLLFTNNQRKTVGLEKYGIEVVETKRLYGRVTPHNRFYLSTKMKKLGHELEEIFREVNS

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012310866.1|1036472_1036862_+|transposase	IS200/IS605 family transposase	W0UUZ0	Sulfolobus_monocaudavirus	1.9e-37	56.8
WP_012310867.1|1036846_1038055_+|transposase	transposase	A0A1C9EG34	Acidianus_two-tailed_virus	1.6e-10	27.0
WP_010865413.1|1038039_1038357_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	7.7e-05	31.0
WP_012310868.1|1038605_1039652_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	3.9e-53	37.5
WP_012310869.1|1039636_1040209_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	3.0e-23	36.0
WP_012310870.1|1040183_1041350_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.7e-68	38.2
WP_004082371.1|1041346_1041844_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.2e-30	44.7
WP_004082370.1|1041818_1042628_+	hypothetical protein	NA	NA	NA	NA
WP_004082369.1|1042640_1043492_-|protease	protease modulator HflC	NA	NA	NA	NA
WP_012310871.1|1043488_1044415_-|protease	FtsH protease activity modulator HflK	S4VT23	Pandoravirus	4.0e-09	26.5

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NC_010483|1204316:1211929|DBSCAN-SWA
GATGAAGATAACGCTGAATAGCGTTTCCTTCAGATACAACGGAGACTACGTTTTGAAGGACGTGAACGCCGAGTTCGAAACGGGGAAGATCTACGTTGTGGTGGGAAAAAACGGCTCCGGGAAGACCACCCTTTTGAAGATCCTCGCAGGACTCCTGGAAGCCGAGGGAGAGATTTTCCTGGACGGTTCACCAGCGGATCCGTTTCTTTTGAGAAAGAACGTGGGCTACGTCTTCCAGAATCCGTCTTCACAGATCATAGGTGCCACCGTGGAGGAGGACGTGGCCTTTTCGCTGGAGATACTGGGGCTCGACGAGGGCGAAATGAGAAAGAGAATAAAGAAGGTCCTGGAACTGGTGGGACTCTCCGGTCTCGAAAAGGAAGACCCGCTGAGCCTTTCAGGAGGACAGAAACAGAGACTTGCAATCGCCTCGATGCTCGCTCGAGACACACACTTTCTCGCTTTAGATGAGCCGGTTTCCATGCTGGACCCTCCCTCTCAGAGGGAGATATTTCAGGTGCTCGAGAGCCTCAAGAATGAAGGAAAGGGAATAATACTGGTAACACACGAGCTGGAGTATCTGGATGATATGGACTTCATACTCCACATCTCGAATGGTACAATCGATTTCTGTGGAAGCTGGGAGGAATTCGTGGAGAGAGAGTTCGACGATGTGGAGATTCCTTTCAAGTGGAAACTCTGGAAGAAATGTGGGAAGATAAACCTGTGGGAGGATCGGTATGAGAATTCTGGTAACCAACGACGACGGGATACAGTCTAAGGGTATCATCGTCCTCGCAGAGCTTCTTTCTGAGGAACACGAGGTTTTCGTGGTGGCTCCAGATAAAGAAAGGAGCGCAACCGGTCACAGCATCACCATACACGTTCCGCTCTGGATGAAGAAGGTTTTCATCTCAGAGAGGGTGGTTGCGTACTCCACCACAGGAACGCCCGCGGACTGTGTGAAACTCGCCTACAACGTGATCATGGATAAAAGGGTCGATCTCATCGTGAGTGGTGTGAACAGGGGACCCAATATGGGCATGGATATTCTCTATTCTGGGACGGTCTCGGGTGCGATGGAAGGTGCCATGATGAACATTCCTTCGATCGCAATATCGAGTGCTAACTACGAGAGTCCCGATTTCGAGGGAGCGGCACGTTTTCTGATCGACTTTCTGAAAGAATTCGACTTCTCACTCCTCGATCCTTTCACCATGCTGAACATAAACGTGCCTGCTGGTGAGATAAAGGGATGGAGATTCACAAGGCAGAGCAGAAGAAGGTGGAACGATTACTTCGAAGAGAGAGTCTCACCCTTTGGGGAGAAGTACTACTGGATGATGGGAGAGGTCATCGAAGACGACGATAGAGACGATGTTGACTACAAGGCGGTTAGAGAAGGGTACGTCTCCATCACTCCGATACATCCCTTCCTCACGAACGAAACGTGTCTGAAGAAGTTAAGGGAGGTGTACGACTGATGTACAGAATAAGAGTCTTTGGAGATCCCGTTTTGAGAAAGAGGGCAAAACCCGTCACGAAGTTCGACGATAACCTGAAAAAGACCATAGAGAGAATGATAGAGACGATGTATCACTACGACGGTGTGGGACTCGCGGCACCGCAGGTTGGAATATCTCAGAGGTTCTTCGTCATGGACGTTGGAAATGGCCCGGTTGCCGTGATAAATCCGGAGATTCTTGAAATCGATCCAGAAACTGAAGTAGCAGAAGAGGGGTGCCTCAGCTTTCCCGAGATCTTCGTCGAGATAGAAAGGAGCAAAAGAATAAAGGTCAAATACCAGAACACAAGGGGAGAATACGTGGAAGAAGAACTGGAAGGTTACGCTGCAAGGGTTTTTCAGCACGAGTTCGATCATCTGAACGGAGTTTTGATCATCGATCGAATCAGTCCAGCAAAGCGCCTTTTGCTCAGAAAGAAACTCATGGACATAGCAAGAACCGTTAAGAGATGAGGAGGGAAGAGACGTGAAAAGGTGGTTGCTTTTGATTTCCTTGATGGTGTTCTCCGCGGTTGTGTTTTCGTTCTCCGCACCCGTTGATTCTCCAAGGGTTTCGGCAACTTTCGGTGAGTACAGAGGGAGTGGAAACAGAGGACCTCATTTTCACATGGGAATCGACTTTTCTACGGGATTGAAAGAAGGAGTTCCCATATACGCCTCCGAGAGAGGCTGGCTCGTCAGAATCGAAATAGACGAGGACGATATATACGGCTACACAGTGGTTCTGGAACACGAGAATGGATACAGAACGCTCTACGCCCATCTGAGCAGATTCTCGAAAAAACTGGAAACGGTAGCGAGTTCTTTGAAACAAGAGTTCGGGAATGTGAGGATCGTCGTGAACTTCCCTGAGAAAGAGATCTGGTTCGAAAAAGGTGAAGTCGTCGGATACTCAGGAACCACAGGAGAGGCACCCATTCCCCACGCACACTTCGAGATAAGAGACAGGAACGAGGAAGTTTCCTACGACCCTTCGACTTTCTTGAACCTTCCAAAACCCGTGGATGAGGATATTGTTCTGGAAAAAATAAAGATAGGAGACAGTGTGTACGATTTCGTCGAGGGGAGGACGTACCCGTTCAGTGGAAATTTCCCGGATCTTGCGATCAAAGCCTATTCGAAAGGGTTCAACAACACGTTAGGACTCAAGAAGATCTCACTCCTTTTGGAAGGTGAAGAGATCTATCAGATCTCTTTCGATCAGATTCCCTGGTCCGAGTTCACAAACGTCTGGGGAGTGTACGATAGGAAGTCCGTTTCGGCCGCGTACAGGTTTGAGCTCTGGTACAAATTGTTCCCCGAAACGTTTTCTTCGATGATAAAGGTGAACAAATTTCCCGAATTGGGAAAAGCCCCAGATTTTGCCAAATACACAGTCGTTATTGAAGATATCTGGGGCATGAAGAAGGAATTTTCTTTCTACCTGCAGCGGAGGTGAAATCATGCTCTTTCTGTTTTTTGGGAAAAAAAAGAAAGACCTGAACAAAAATCCGTTTTACAGGGAAAAAGGGGCTCTTGTAATTTACATAAAATGTGACAGATGTGGGGAAGTCTTCAGAAGTCATCTGAGAACGGGGTACGATTTCATCGTGGATTACGATAACCCGGGCGTTCCTTACAAGATAGACAAGCTCTATGTGGGTTCAAAATGTCCCAACAAGATACATCTTGTTGCGACCTTCACGTCTTCTTATAAACCGGTGTCTGTTTCTCTGGAGGGTGGAACTTTTATAACCCGAGAAGAATTTGAAGAATCGCAAAAACAATGATGTAACCTTTTTTTAAGAAAGATTGTGATAAACTATCAAGGCTGTTATAAGATCAGCGAAAGGAGGATGGGAGATGAGAAGACTTTTCACCAGCGAGAGCGTAACAGAAGGGCATCCGGACAAAATCGCCGACCAGATTTCCGACGCCATACTCGACGCCATGCTCGAGCAGGATCCAAGGAGCAGGGTTGCCGTTGAAACACTCGTAACAACAGGGCTTGTCATCATCGCGGGAGAGGTTACCACCAGAGCTTATGTTGAGATCCCCGATATAGCGAGAAAGACCATTCTGGAGATAGGATACACGAGGGCGAAGTACGGATTCGATGGGGAAACCTGCGGAGTGCTCACCAGCATCCACAGTCAGTCTCCTGACATAGCTCTCGGTGTAGACAAGGCGCTCGAGGTCAAAACAGGAGAGGAAGTGGCTGACGAGTTCGAGGCGCTCGGAGCTGGCGACCAGGGAATCATGTTCGGCTACGCCACCAACGAAACCCCTGAGTACATGCCCCTTCCCATAACTCTCGCCCACAAACTCGCCATGAGACTCGCTGAGGTCAGAAAGAACGGGACTCTTCCTTTCCTCAGGCCAGATGGAAAGACACAGGTGACCATAGAATACGAGGACGACAAACCAGTCCGTGTCGACACAGTGCTTATTTCAACTCAGCACGATCCGGATATCTCCCAGGCAGATCTGAGAGAGGCGATAATAGAACACGTCATAAATCCTGTGATTCCAGAACAGTACAGGGACGACAAAATGAAGATACTGGTGAATCCAACAGGAAGATTCGTTCTTGGAGGTCCCATGGCCGACACGGGGCTCACAGGGAGAAAGATCATCGTTGACACTTACGGTGGTTGGGTACCCCACGGCGGAGGGGCGTTCAGCGGAAAAGATCCCACAAAGGTTGACAGATCGGCTCACTATATGGCAAGATATGTAGCGAAGAACGTTGTGGCTGCAGGTCTTGCGGACAAGTTCCTCATACAGCTTTCTTACGCTATAGGTGTCGCGAAACCCGTTTCCATAATGATCGACACGTATGGAACCGCGAAGGTGGATGAAGACAAACTTCTCAAGGTGATCACTGAACTGTTCGATTTCAGACCGGGTGCGATCATAAAGAAACTGAATCTTTTGAGACCTATTTACAGGAAAACAGCCGCCTACGGTCACTTTGGAAGGAACGAAGAGGAATTCACATGGGAGAAACTCGACATGGTAGATGAGTTGAAAAGAGCTTTCAATATGTAAGGGAGGGATCAAGTAGTGCCGAATATCAAATCTGCAAAGAAAAGGGTCAGAGTTTCTGAAAAGAGAAGACTCAGAAACAAGGCTTACAAGACTTTCTTCAAGAACAGAATAAAAGAGGTTCTCAAAGCTATCGAGAACAAAGAACCGAAAGAAGTCGTTCTTGAACTCACCAGGAAAGCGCAGGCTGCCATAGACAAAGCCGTTTCCAAGGGAGTCATCCACAAGAATCAGGGTGCGAGAAGAAAAGCGAGACTTTTCGAGAAGGTGAACGAATACCTGAGAACTCTCGAAACAACTCAGGAGTGAATTTCTTGCTGTTTTTGAAAGCTGGCCCCCTTGCGGGGCATTTCTGATTTTAAAGGGAGGGATTGTGCGTGGAGGGGTTGATAGGGGATTTCTTCAGGTTGATTATTAAAAACTGGTATTTTTCCCTACCCGCCGCTCTTTTTCTCATGTTCGCTGCCAGGTATGTTGAACACATAGCTTTTGCGGTGATCGGTTTTGTAATCGGTATCAACTTCGTGTTTCCTCTTCTTTCGAATATCGAATTTCTCAAATCCTATCTCACGAATGAGAATGTGAAGGTTGTTGTACTGGTGGCAACAGGTGTTTTAACCGCAGTTGTGCTTTACGTTCTGTACAGATACCTGGTGTTCCTCGCTGCTCTCGTCACCGTGACCTTCGTCGCTTACTACGTTATAAACTTTCTGGTGAGTTCTTTTAACCTTCAAAGTGTTCAGTACATGAACTGGATAACGTTTGGACTTTCCGTTTTCATTGGACTTTTAGCTGGATTGACTGCTTACCGCAAGGAAAAAGAATTTGCGAGAATCCTCTCAGTTGTGGTGGGTGCTGCGATTTTTTCAGTGCTGGTTTTGTTCTACCTTTCCGGACTCTTTGGTGTGGAGTTTAAACCGGAATCTCTCTTTGCGAACAAGATGATGATCTTCTTCTACGTGTCTCTTTTTCTGCTCTTTCTGTTTCTTTCTGCATGGTTCACTTTCAGGAAAAGATCCTATCAAAAAACTAGTTCGTAAATGTTAAAATAGTATAGAAACCAGATCTGAAAGGAGGTGTACCCCCTCGGGGGATCGAAGATGGCGAAAAAGAAGATTCTGGTGGTTGACGACGACCCGGCAATTCTCGAGCTGGTAGGATACAACCTTTCCAAAGAAGGATACGAGGTGCTCAAGGCTTACGATGGAGAAGAAGCACTCAAAATTGCCAACGACGAGGATGTGGATATGTTCATAGTGGATATCATGCTTCCTGGAATTGACGGTTTCGAGCTGGTCAGGAAGATCAGGGCTATAGAGAAATACAAGAACACCCCCGTGATCTTCCTGAGCGCGAAGGGAGAAGAATTCGACAAGGTGCTTGGGCTGGAGCTCGGTGCGGACGACTACATCACCAAGCCGTTCAGCGTGAGAGAGCTTCTTGCGAGGGTGAAGGCTATATTCAGAAGGCTTTCCACCGCTACTCAGAGCAAGGAAGAAAGGCCTAAGAAGATCATAGCCAAGGATCTTGAAATCGATGTGGAAAAGTACGAAGTGAAAGTGAGAGGGAAAAAAGTGAACCTCACTCCTCTCGAATTTGAACTGCTCCGATTCCTCGCGGAAAACGAAGGAAAAGTTTTCAGCAGGGATGTTCTCCTTGATAAACTCTGGGGATACGATTATTACGGAGATACGAGAACTGTAGATGTTCACATAAGAAGGCTGAGAACGAAGATAGAAGAAGATCCTTCGAATCCGAAATACATAATCACTGTGAGAGGAAAGGGATACAAATTCAGGGATCCCGGAAAGGAAGACTGATCAATGAGTATTTTCCTGTTTGTCGTAGTAGCTGTTCTATTCGTCCTGCTCTTTTTGGTGTTCAGGAAGCGCCTATCTGAGTACAGAATCTTCATCGAAAAGCTGTCAGATATGCTGGGGGAAAAGGACGTTCCCCCGCTTTATCTTTTCGAGAGACTGAAAAAGTACGTAGACAATCTGAAAGAAACAATTTCGCGTGTTGAGGTGAGCAGAGACAACTTCCTCACGATTTTGAACAGCCTCAGTGAACCCATATTCATTCTGGATCGAGAGGGGAAGATCACGTTTTTGAACGAAATTGCCCGTGAACTTGTGCAGGGCAGGATCAATCCCGAAGGAAGGCCTTATTACGAAATATTTGAAGATTACTACATAAACGAGATGGTGGAAGAGACCATCAAAAGTGAAGAACCGCAGGAAGGAACTCTCGTTACCTATGTTGGTAACGAAAAGAAATACTTCCATGTGAAGGTGATACCCGTCGAGCTGAAGAGCGGCGACAAAATCTTTGTCATTCTCTTCCACGATGTGACCAAGGAAAGAAAGCTCGACGAGATGAGAAGAGAATTCATAGCCACAGTTTCACACGAACTCAGAACTCCCCTCACTTCCATCCACGGTTATGCGGAAACGCTCCTTGAAGATGATCTGGAGAACAAAGAACTGGTCAAAAGGTTTTTGAAGATCATAGAGGAAGAATCCGCTCGAATGACACGCCTCATCAACGATCTTCTCGACCTTGAGAAAATGGAAGAAAGTGAAGTCAATTTTGAAATGAAAGATGTGGATCTGTGTGAAGTGGTAGAATACGTTTACAAAATCATACAGCCAATAGCTGAGGAAAACGAAGTGGATCTTATCGTTGAATGCGAGGATGTTGTGGTTAAGGGAAACAAAGAAAGGCTGATTCAGATGCTCCTGAATCTTGTGGACAACGCTGTTAAATACACATCTTTGAAGGAAAAAGGAGAAAAGAAGGTCTGGGTGAGGGCCTACGATACACCGGACTGGGTGGTTGTTGAGGTAAAAGACACGGGACCTGGAATACCTAAGGAATCCCAGAGCAGAATCTTCGAAAAGTTCTACAGAGTGGATAAAGCGCGTTCCAGAAAGATGGGCGGAACAGGTTTGGGTCTCACGATAGTGAAAACGATCGTTGACAAGCATGGAGGAAAGATAGAGGTTGAGAGTGAGATCAACCAGGGAACGGTGATGAGAGTTTTCCTGCCGAAAAGAGGGTGA

Protein sequences of DBSCAN-SWA_2

>NC_010483|1204316:1211929|1205798_1206293_+|WP_012310990.1|DBSCAN-SWA
MYRIRVFGDPVLRKRAKPVTKFDDNLKKTIERMIETMYHYDGVGLAAPQVGISQRFFVMDVGNGPVAVINPEILEIDPETEVAEEGCLSFPEIFVEIERSKRIKVKYQNTRGEYVEEELEGYAARVFQHEFDHLNGVLIIDRISPAKRLLLRKKLMDIARTVKR
>NC_010483|1204316:1211929|1207282_1207609_+|WP_011943663.1|DBSCAN-SWA
MLFLFFGKKKKDLNKNPFYREKGALVIYIKCDRCGEVFRSHLRTGYDFIVDYDNPGVPYKIDKLYVGSKCPNKIHLVATFTSSYKPVSVSLEGGTFITREEFEESQKQ
>NC_010483|1204316:1211929|1208885_1209176_+|WP_004082168.1|DBSCAN-SWA
MPNIKSAKKRVRVSEKRRLRNKAYKTFFKNRIKEVLKAIENKEPKEVVLELTRKAQAAIDKAVSKGVIHKNQGARRKARLFEKVNEYLRTLETTQE
>NC_010483|1204316:1211929|1210690_1211929_+|WP_012310991.1|DBSCAN-SWA
MSIFLFVVVAVLFVLLFLVFRKRLSEYRIFIEKLSDMLGEKDVPPLYLFERLKKYVDNLKETISRVEVSRDNFLTILNSLSEPIFILDREGKITFLNEIARELVQGRINPEGRPYYEIFEDYYINEMVEETIKSEEPQEGTLVTYVGNEKKYFHVKVIPVELKSGDKIFVILFHDVTKERKLDEMRREFIATVSHELRTPLTSIHGYAETLLEDDLENKELVKRFLKIIEEESARMTRLINDLLDLEKMEESEVNFEMKDVDLCEVVEYVYKIIQPIAEENEVDLIVECEDVVVKGNKERLIQMLLNLVDNAVKYTSLKEKGEKKVWVRAYDTPDWVVVEVKDTGPGIPKESQSRIFEKFYRVDKARSRKMGGTGLGLTIVKTIVDKHGGKIEVESEINQGTVMRVFLPKRG
>NC_010483|1204316:1211929|1204316_1205096_+|WP_012310988.1|DBSCAN-SWA
MKITLNSVSFRYNGDYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLEAEGEIFLDGSPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSLEILGLDEGEMRKRIKKVLELVGLSGLEKEDPLSLSGGQKQRLAIASMLARDTHFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVEREFDDVEIPFKWKLWKKCGKINLWEDRYENSGNQRRRDTV
>NC_010483|1204316:1211929|1205055_1205799_+|WP_012310989.1|DBSCAN-SWA
MRILVTNDDGIQSKGIIVLAELLSEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLAYNVIMDKRVDLIVSGVNRGPNMGMDILYSGTVSGAMEGAMMNIPSIAISSANYESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVPAGEIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLTNETCLKKLREVYD
>NC_010483|1204316:1211929|1209967_1210687_+|WP_011943665.1|DBSCAN-SWA
MAKKKILVVDDDPAILELVGYNLSKEGYEVLKAYDGEEALKIANDEDVDMFIVDIMLPGIDGFELVRKIRAIEKYKNTPVIFLSAKGEEFDKVLGLELGADDYITKPFSVRELLARVKAIFRRLSTATQSKEERPKKIIAKDLEIDVEKYEVKVRGKKVNLTPLEFELLRFLAENEGKVFSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGKED
>NC_010483|1204316:1211929|1209244_1209907_+|WP_004082166.1|DBSCAN-SWA
MEGLIGDFFRLIIKNWYFSLPAALFLMFAARYVEHIAFAVIGFVIGINFVFPLLSNIEFLKSYLTNENVKVVVLVATGVLTAVVLYVLYRYLVFLAALVTVTFVAYYVINFLVSSFNLQSVQYMNWITFGLSVFIGLLAGLTAYRKEKEFARILSVVVGAAIFSVLVLFYLSGLFGVEFKPESLFANKMMIFFYVSLFLLFLFLSAWFTFRKRSYQKTSS
>NC_010483|1204316:1211929|1206306_1207278_+|WP_004082174.1|DBSCAN-SWA
MKRWLLLISLMVFSAVVFSFSAPVDSPRVSATFGEYRGSGNRGPHFHMGIDFSTGLKEGVPIYASERGWLVRIEIDEDDIYGYTVVLEHENGYRTLYAHLSRFSKKLETVASSLKQEFGNVRIVVNFPEKEIWFEKGEVVGYSGTTGEAPIPHAHFEIRDRNEEVSYDPSTFLNLPKPVDEDIVLEKIKIGDSVYDFVEGRTYPFSGNFPDLAIKAYSKGFNNTLGLKKISLLLEGEEIYQISFDQIPWSEFTNVWGVYDRKSVSAAYRFELWYKLFPETFSSMIKVNKFPELGKAPDFAKYTVVIEDIWGMKKEFSFYLQRR
>NC_010483|1204316:1211929|1207682_1208870_+|WP_004082170.1|DBSCAN-SWA
MRRLFTSESVTEGHPDKIADQISDAILDAMLEQDPRSRVAVETLVTTGLVIIAGEVTTRAYVEIPDIARKTILEIGYTRAKYGFDGETCGVLTSIHSQSPDIALGVDKALEVKTGEEVADEFEALGAGDQGIMFGYATNETPEYMPLPITLAHKLAMRLAEVRKNGTLPFLRPDGKTQVTIEYEDDKPVRVDTVLISTQHDPDISQADLREAIIEHVINPVIPEQYRDDKMKILVNPTGRFVLGGPMADTGLTGRKIIVDTYGGWVPHGGGAFSGKDPTKVDRSAHYMARYVAKNVVAAGLADKFLIQLSYAIGVAKPVSIMIDTYGTAKVDEDKLLKVITELFDFRPGAIIKKLNLLRPIYRKTAAYGHFGRNEEEFTWEKLDMVDELKRAFNM

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012310988.1|1204316_1205096_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.4e-23	33.0
WP_012310989.1|1205055_1205799_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_012310990.1|1205798_1206293_+	peptide deformylase	A0A067XQZ3	Caulobacter_phage	1.8e-21	44.7
WP_004082174.1|1206306_1207278_+	M23 family metallopeptidase	D7RWE0	Brochothrix_phage	3.0e-07	30.8
WP_011943663.1|1207282_1207609_+	hypothetical protein	NA	NA	NA	NA
WP_004082170.1|1207682_1208870_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.0e-138	65.3
WP_004082168.1|1208885_1209176_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_004082166.1|1209244_1209907_+	hypothetical protein	NA	NA	NA	NA
WP_011943665.1|1209967_1210687_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-43	44.3
WP_012310991.1|1210690_1211929_+	PAS domain-containing protein	W8CYF6	Bacillus_phage	1.5e-35	36.7

Sequences of DBSCAN-SWA_3

Nucleotide sequences of DBSCAN-SWA_3

>NC_010483|1568934:1586854|DBSCAN-SWA
AATGGAACCAATAATTGAGATCGAAAACTTCAGCGCTTACTACGGTGATAAAGTGGCCGTCAAAAACGTGACGATGAAGATCTTCAAAAATCAGATAACCGCCATAATAGGACCATCCGGGTGTGGAAAGACCACGCTCCTCAGGAGTATAAACAGAATGAACGATCATATACCCGGTTTCAGGGTGGAAGGGAAGATATACTTTAAAGGGCAGGACATATACGATCCGAAACTCGATGTGACGGAGTACAGAAAAAAGGTGGGAATGGTCTTTCAGAAACCCACTCCTTTTCCGATGTCGATCTACGACAACGTGGCGTTCGGCCCGAGGATTCATGGGACAAAAAGCAAGCACGTACTCGACAGAATCGTTGAAGAGTCCCTTAAGAAGGCGGCACTCTGGGATGAAGTAAAATCAGAGTTGAACAAACCCGGAACGAAACTTTCGGGTGGCCAGCAGCAAAGGCTCTGTATAGCGAGAGCACTTGCAGTGGAACCCGAGGTGATCCTCCTCGACGAACCAACATCGGCCCTCGATCCGATTGCGACTCAAAGGATCGAAAAGCTTCTGGAAGAACTCTCTGAGAACTACACGATCGTGATCGTCACCCACAACATAGGACAGGCCATAAGGATCGCCGATTACATAGCCTTCATGTACCGGGGCGAACTCGTAGAGTACGGCCCCACGAGGGAAATTGTAGAAAGACCGAAGAGCAAACTCACCGAAGAGTATCTGACAGGAAAAATAGGATGATGGAGGCGAAAGGATGGTGGACCACGTTCATTTCGAAAGGGAACTGACCCTTCTGAAATCGGACGTTTCAAAGATGCTCTTTCTTGTTTCAGAATCTCTGAACGATGCGATAGAAAGCCTCGAAACCATGAACGAGACACTCGCAAAAAAAGTGCTCGACTCAGACGATATGATAGATGAACTGAACAGGGAGATAGAGGAAAAGGCCTATCAGATCATAGCAAGGTACAACCCCATCCTCAAACAGCTCAGATACATCATCACTATCCTGAAGTTTTCCAACGACCTGGAAAGGATCGGAGACCTTTCCTGCAACATCGCTGAGAAATGTCTGTTTCTCTCCGAAAGGAAGATCCGGTTTGAGATGCTGAAGGAAATAAAGGACATGTTCGGAAGTACACTGAGGGTGGTTCAGGACTCTTTCAAGGCCTTTGTCGAAGAAGACGTGGACTCTGCCTACAGGCTCTGGAAGTTCGACGACGTGATAGACGAGATGGAAAAGAAGATCAGAAGAATCGTGGTGGAAAGAATAAGGGAGGGAAACATCTCGGCCGAGCTGGCGCTGGTTTACATACTCATCGCAAGAGACCTTGAGAGGGTGGGAGATCACGCCAACAACCTCTGTGAGGAGGTCATATACATAGAAACGGGAAAAAACATGAAGGAATTCCTGAGGGGTGTTGAGAGTGGGAGTGAAGGTGCTGATAGCTGAAGACGACGAAGACATAAGGAGCGTGTTGAAGAGATACCTGGAAACCGAAGGATACGAGTGCGACGAAGCAGAGTCCCTTTTCGATCTCAAGAAAAAACTCTCTGAAGGAACGTACAACGTGCTTCTCCTCGATCTCATGTTTCCCGACGGTGTGGCGATGGACGAAATTCCCGAGATGAAAGTTTCTCACCCGGAAATGGCCATCATCATCATCTCGGCAAGGGACAGGGACATGGACCGCATCTTTGGAATAGAGCTCGGAGCGGATGATTACGTGACAAAACCTTTCAATCCAAGGGAAGTTCTCGCACGTGTGAAAGCGGTTCTGAGAAGGATGGGGAAAGAACAGAAGGTACTGAGATTTGGAAGACTCGAGATCTTTCCAGAGGATTACATAGTCAGATACGATGGAAAAAACGTTGAGATGACAGCCAAAGAGTTCGAGCTTTTGAAACTCCTCGCCACGACCCCGAACAAGGTCTTTTCAAGAGAGGAGATCCTGAACAGGGTGTGGGGAGACGATTACGTCTCTGACAGGGTAGTGGATGTCCACATCAGCGCCATTCGATCGAAGATAGGAAAGGGATGGATAAAAACGGTGAGGGGATTGGGATACAAGTTTTCAACACGGGGTGATGAGGGTGATAGAGCTTGAAGATCTCGATCATATCAGAGAAGCGATCGTGATACTGAAGGGCCTGGAAGTGGAAGGTGCGAACAAACCGGGTGAGAAACTCGGCTTCAAAAAGGGAAAGAATCTGATGTCGATCTTCACGTGCAAGGAAATGGATAGATTCATCAGAGATGTTCAAGAAAGAAAGAATTTCTCCCTTGAAACAAACGCCTATTTTTTTGAACTCCACTCGAAAAGGTTCGTCTCCCTCCGCTACCTTCCGAAGAAGAGTCTTCTCTTTGTGAACGATCTCACCGAGGAGAGAACTCTCAGCGAGGCAAAACTCGATTTTGTAACGGCCGTCTCCCACGAGCTGTTCACACCTCTTTCTGCGTCAAAGGCAAACGTTTTTCTTCTGAAGGACATAGAAAACGATCCAGAAAAACTCGAAATACTCGGAAAAGTTGAGCGCTCCTTGGACAGAATGGAAACGATCATCAGACAGCTCAAGGTGCTCACCATGATACAGCTGAGACTTTACGAACTCAAGATGGAGCACATTCCTGTCGAAGAAGTCGTTCACATGGTCTTGGAAGAGCTTCGAGAAAAGATCGAGTCAAAGAAGATCAAGGTAAACGTTTTTGTGGATGTTGAAACAATCGAAACTGACAGGTTCGTGTTCCACACGATCTTGAAGAACCTTGTTTCAAACGCCGTGAAGTACTCTTATCCCGATTCTGTGGTGGAGATTTCTATCACCGGTGAAAGACTGAGTGTGAAAGATCAGGGAATCGGTATCAAAGAAGAGGAGAAGAGCAGGATATTCGAGCGCTTCTACAGAGGTTCAGAAGCACTCAAGATGGCGCCCGGTTCTGGCCTGGGACTTTCCATAGTGAAACACCTGTGCGACACGATAGGTTACAGGCTGGAAGTGAACTCTCAGTGGCTCGTTGGATCAGAGTTCATCGTTCACTTCAAATGATGAACTCCTCTTCTTCCCACGTTTTCCCCTCCGGGTTGTGCCACCCGCCTTCTCTCGTGCACCAGGCTGGGAGTGGAAACTTCACCGTGAGAGGAAGGTTCAAGAACGGCTGATCTATGATCACTTCTCCCTGTCTCAAGAGTGCTGCTTTTCTCTTGTAGTGCTCTGTGAGATGCGAGTATTCGGGTTTTATGAGTTCGGCTCCTTTCTGCCTGCCCACAACCACCGTAGCGGCTTGCGTGATTACCCTGTAATCCACTTCGGAAGCGGTCTGTTCGGCTCCAATGAGGATCACTCTGAAAGATCTTCCTCTTTCCGCCACATCTCTGAAGATGTTCGCAAGGGCTCCTCCGCCGTGTCTTGGTGCGTACTTGTTCAGCTCGTCCAGGAAAATGAAAACGGGCTGGGTGAAACCGCTGTTTCTTTCTTTTTCTCTCATTACCTCGGAAAGAATCGCACCTACAACGAACGCCTGTGCGCGTTCTCTCAACTTCGAAATGTCGATGACTGTGACCCTTCCCGGCACGTTCCAGTCGATCCGATAGTTGGTCTGCCACGGTTCCACTTTCAGAGGCGGTTTCACCCAGAGTCTGTCGAAGTCCATCTTTTGAGCGGCTTTCAATCTCCTGATCAGCATCCCGATCGTCTGCTTCTGGACGTGTTCTCCCAGGAGATACTCTCTTGTCCTTCCACCTTCTCCAAGATCTTTTATCAAACTATCGAGATCAAGTGGAAGATCCACGACTTCACCTTTCTTCATCACCACTTCGCGCAGTGCTTCTGACGGCAGTTTTTTTCTGTCAACGATGTATCCCTCTTTCAGAAATTCCTGGTACATCTCTTCCATTCTCTGGGAAAGGTGCTCCTGGAGGGACCAGACCGCGAGCTGAAAGTTCTGGTTTCTCGTCATCTCATCTGGATCGAACATGAGTTCCAGAAGGTTCATTTCGACGATGTCGAACACGTCCCAGCCGTAAACGTTCACACCGATCAATCTCTTGTTGACATCCGGTATGTAAGCTCCCTTCTCCCTGCTGGGAGCGTAGAATGCGACATTTTCAAAAGGTTTTGGTTCAATGCCGAGAACCCTGTACATTTCATCCCATTTCTCCCTTTCTGAATACCACTCCTTCGAAATGCGATCGAGAAACAGCAGACTCTCTCCCTTCACGTTGAAGATGATGTATCTCGCCTCTCTCAGCTCTCTCATCAGATCTCCATCGTTTTTGCTGGACGTTTCTATCATCGACTTGACGAGGAACGTGGTGTAAGACGTTTTCGCCGCAACACCGGACTGTCCGGAGACGTTTATGTGGGCTCCGTTGTCTCCCAGGATGTATCTCAAATCGAGATAAGCCGGCCTTCCGTTCTTCAGCAAGCCAACTGGCAGTGCAACGTTCTTTCTCTTCAACTCATCGAATCCAAGGGCGATGTCTATCTCCTCATCTCCGACGAGAAAGACGGGGGAGCCTATGTTTGGAGGGATCTCCGGAGCGTCTTCGAGGAGCTTGTCTCCTTCTTTCAGAAACGATCTTGTCACCTTCACCTTCGCGATGTATATCGGATAGGCAGGTTTCAACTTCTCGAGTGCAACTTCCTCTTCGTAGCCGTTTCTCAAATCTCCATCCCATCTGTTCTGTATATCAACGATCATTCCGTACGTGACGACGGTGCCGTACCCCGTGAGGTACTCAACCTTCACAACATCCTCTATCTGAGCGAATACCTTGTACGCTTCTCCTGGCTTTTCGGCGGTCATTCGAACGAAGAATTCGTACGGACTGGACTGGAATATACCGGTGACAACCCCTATCTTTCTTCCGCTCATTTACCTATCCCTCCTCGATGAGCTGTTTTCTGTACATTCTACTGTACATGCCATCCCTGATCATCAATTCCTCGTGAGTGCCCTCTTCTATCACTCTTCCCTCGTGCAAGACATATATCCTGTCGGCGTTTTTCAACACCTTCAATCGATGTGTTATGACGACGATCGTTTTTCCTTTCATTCCTTTTCTGATCGAATCTATGATCCTCTCTTCGGTTTCAGGGTCAACGGCCGAGAGACAGTCGTCGAATATGTAAACTTCGAAATCTCTTATGAGAGCGCGGGCTATGGTGATTCTCTGTTTCTGACCGCCCGAAAGCGTCACACCTCTTTCCCCAACGATCGTGTCGAATTTTTCTGGAAAGCTCATGATATCGTCGTAGACGGCCGCAAGTTTTGTCACTTCTTCGATCTTTTTCTCATCGACGTTTTCCAAACCGACCGTTATGTTGTTTCTCACCGTGTCTGAGAACAGAAACGTTTCCTGCGGAACCAGAGTGACGATGGATCTGATATTCTCCGAAGAAACGTCGTTTATGTCCACACCGTTTATGAATATCTTTCCCCTTTCCACCGGATAGAGCTTCACGAGAAGCTTTGCTATCGTGGACTTTCCACTTCCAACACTGCCGGCGATGCCTATCATTTCTCCCCTGTTTATCTTCATGGTGACGTTTTTCAGAACTTCACGTTCTGTTCCGGGGTATCTGTAGGTCAGGTTTCTCACTTCAAAACTTTCAAAGTGATCTATCCTGATCGGCTTCTCGGGTTCTTTAACTTCGGGTTGAGCGGTGAAGATCGTGTCCAGACGTCTCATAGCCGCTCTTCCCCTCTGGAACAGATCCACCATGAAACCGTAGGCCATCATCGGCCAGACGAGCATTCCAAGGTAAGAATTGAAGGCTATGAAATCACCGAGAGAGATCTTCCCGTTTATAACGGCTCTTCCACCGTAGAGAAGGGCGAGGAAAAAAGCGGTCGAAGCGATAAGATTGATGAGGGGCCTGAAAACGCTGGAGACTTTGATTGCACTGAGAGTGTCTTCGTAGTTTTTGAGTGCCCTGTTTTCAAATATCTTGAATGAGACGTCTTCCACCGAGAAGCTCTTCACAATGCGCACACTCGAAATCGTTTCTTCGGTGAACCCGGAAAGTTCCGAGAAGGATCTCTGAACTTCCGATACTTTTCTGTGTATGAGTCGTCCAAAGCTCATCGAAACAGGGGCAAGAAGCAAAAGCGGCGCAAAGCTGATCCAGGAGAGCTTCCAACCCACGTTACCTATCATGAAGAAAAAGACCATCACGATCATGATGAAAGAATCGAAGAAGAGTATCGCACCCTGGCCGAGCACTCTTCTCAGAAGGCTCAGATCGTTGGTGAACCTTGCCATGAGTTCACCGCTTTTCATTCGATCGAAGAAACCGGGAGTGAGACTGAGCAGCTTTGAGAACATCTTGTTCGATGTCTCGAGGAAAAACTTTCTTGCAGTGCCACCAAAGAAGAATCTCCAGAAGAACCTTCCAATAAACATCCCGCTCGCGGCGGCCATCACCCAAAACAACATTATTTTGAGTGTATCGAAGTTCATCGTTTCTGTGTTCAGCATGTCAACGATCTTTCCGATGACACGTGGAATGTAGACTTGAAGGAGGTCCACCGCGATGAGTGAAAGAACACCGAGAAGGTATTTGTGCCAGTTTCTCTTCAGGAAATCAACGAGAATTGAGGAAGTCTTCAATTCTATCCAGCGCCTCCGTAAGTCTTTCTATAGATGTGGCAAAAGAAAGCCTCACAAATCCAGGCTTCAGAAAAGCGGATCCTGGAACGAGTGCAACCTTCTTTTCTTCGAGGAGCCTTTCACAGAATTTCACATCGTCACCCCGGACTTTGAAAAAGAGGTAGAACGCACCTTCTGGTTCCACGAACTTAACACCCATCTTTTTCAATCTTTCCACCACGAAATTTTTTCTTTCTTTAAAGGTCTGAACCATGTAAGAGTTGTCCACTTCCAGAGCCTTCAAGGCGGCGTACTGTGCTACCGTGTTGATACAGGAGGTGGTGTGAGACTGGATCTTCGACACAGCGGTCGCTACTTTTTCGCTCGATATCAGGTAACCCACCCTCCAGCCGGTCATGGAGTGAGACTTCGAGAAGCCGTTTATGTAAACTATCCGGTCGAATCCTTCAGAAACATCGAGTATCGATGTGAATTCATCCGTGTAAACAAGGGAATCGTAGACTTCGTCGCTGATTATGTAGAAATTCCTCTTCTTGGCAAGTCTCACAAGTCCTTCAAGGAACTCTCTTCTGTACACCACACCAGTGGGATTGTTCGGCGAGTTGATAAGAACGGCTTTCGTTTTCCCAACAAGAAGCCCTTCCACCTCTTCCAGACTGGGCTGGAAATTTTTACTCATGAACGTCTCAACCACGTTCACCGTGCCACCAGCAAGGATGATCTGAGGAATGTAGCTGACCCAGACGGGAGAAAACACGATCACTTCGTCACCGGGATCAAGAAGGGCCATGAAAGCATTGAACAGAGCCTGTTTCGCTCCATTCGTCACCACGACCTGATCCGGTGAGATATCTTTTTTGTATCTCTCGCCTATCCTTTTCGCTATACCCTCTCTGAGTTCGTAGATACCACGAGGATCTGTGTATTTCACTTCTCCTTTCTGGAGAAATCTCATCGCTTCTTCCACGACGGGTTCCGGTGTGGGAAAATCCGGCTCACCAGCCGTTAGATTGATCACGTCTTCTCCCTTTTTTATGAGGGCTTTGGCCTTCGCGTCGAGTTCCATGGTTTTCGATATGGGAATCTCTGATATTCTCCTGGATACCATTTAGAACCCCCCCTGGTCGTGGTTTCATATTTAATACTACCACAAAGATCCGATTTAGACAGGTTAAACTTCTCATGTTATTCTTTTAAAAGAAAGGAGGAGTAAGGAATGGAAGCGGTGATTTTCGACATGGATGGAGTGCTCATGGACACAGAGCCTCTCTACTTCGAAGCTTACAGAAGAGTCGCGGAAAGCTATGGAAAACCTTACACGGAGGATCTCCACAGGAGAATAATGGGAGTTCCTGAAAGAGAAGGTCTTCCCATCCTCATGGAAGCTCTGGAGATAAAAGATTCTCTGGAGAACTTCAAAAAGAGGGTCCACGAAGAAAAAAAGCGCGTTTTCTCTGAGCTTCTCAAGGAAAATCCGGGTGTAAGAGAGGCGCTCGAGTTCGTAAAGAGCGAAAGAATAAAACTCGCGCTCGCAACCTCCACACCACAGCGAGAAGCGCTGGAGAGATTGAGAAGACTCGATCTCGAAAAGTACTTCGACGTCATGGTGTTCGGTGATCAGGTGAAGAACGGAAAGCCTGATCCAGAGATATACCTTCTCGTTCTGGAAAGGTTGAATGTGGTCCCAGAGAAGGTTGTGGTCTTCGAAGACTCAAAGAGCGGTGTTGAAGCCGCAAAAAGCGCCGGCATAGAAAGAATCTATGGAGTCGTTCACTCTTTGAACGACGGTAAAGCGCTTCTTGAAGCGGGTGCGGTTGCTCTGGTGAAACCCGAGGAAATCCTGAACGTTCTCAAAGAGGTTCTTTAAATCTGTTCGTGATCGGCATTCTCCAGTCTTTCCCAAAAGCTCTCGTGGAGATCTTCACGCCGATAGCGGCCTGTTTTCTCTTGTATTCGTTCTTTCGTATCATTTCCGTCACGTCGAGCACGGTCTTCCTGTCGAAGCCTTTTGATGCGATTTCTTCTGGATCGAGCCCTTCTTCTATGTAGAGTCTCAGTATTTCATCGAGCACCTCGTACGGTGGTAGTTTCTCCTGGTCCGTCTGGCCCGGCCTGAGCTCCGCCGTTGGGGGTTTCACGAAGATGTTTTCCGGAATGATCTCTTTTCCTCTCCAGCTGTTGTACCATCTTCCTATTCTGTAAACGTCTGTCTTGTAAACATCCTTTATAACGGCGAATCCTCCCGCCATGTCTCCGTAGAGAGTCGCGTATCCCGTTGCCATCTCGCTTTTGTTTCCCGTTGTGAGAACGAGCCATCCGAACTTGTTGGAAAGTGCCATGAGGTAGTTTCCTCTGATCCTCGCCTGAAGATTCTCTTCGGTTATATCTGGTTCTCGCCCAGCGAAAACGCCTTTGAGTGTTTCGAGGTAGGAGTGAAACACATCCGTGATGGGAATGATGAAAGTCTCTATGCCCAGATTTTTTGCCAGTGTTTGCGCGTCTTCGATACTTTCTTTTGAGGTGTACATGGACGGCATGAGGACACCTTTCACGTTCTCTTTTCCCAGGGCTTCTGTTGCTATGACCGCGACGAGGGAAGAGTCCATTCCCCCACTGAGCCCTATCACGACCTTTTCAAAACCGTTTTTCCTCACGTAGTCTCTCAGACCCGTGATCAGAGCCCTGAACATCTCTTCTTCTCTCACAGGAAGAGGATTCACCACCGGTTCAAAATGCCCGGATTTCTCCCGGAGATTTCCCGCTTCCACGGTTTTCACCGGATAGTTCTGAGTCTTCATGTACCTTCTTCTAGGATCTACCAGTGAGACTCTGAGGTTCTCGTCCAGATCCAGATCCACCGTGATGATCTCCTCTTCGAAGAGCTTTCCGTAGTTTATGACCTCTCCTGAAGCGTCAACCACCATGCTTCCTCCATCGAAAACGAGCTCGTCCTGACCCCCGACCATGTTGCAGTAGGCCATGGCCACGTGATAGTCGTAAGCCTTCATGGAAAGATAGTCCTTTCTCAGAACAGGTTTCCCCACGTGGTAGGGAGAAGCCGAAAGATTCGCTATGAGATGAACTCCCTCACCCAAGGAAAGCGAGGCGCTCGGTTCCACTGGATTCCAAATGTCTTCGCAGATGGTAACTCCCACTTTGATGTTGCCTATTTTCACGACGAGGAGTTCCTCTCCGGGTTTGAAGTATCTTCTCTCATCGAAAACCCCGTAGTTCGGCAGAGATATCTTCCTATACACTCCAAGGATCTCACCGCCTTTCACAACTGCGGCGGCGTTGTACGCATCCTCGTCGCTGTCTATGAAGCCCATCAAGACGGTAACACCGAGATTTCTTGTATGCTGAGCGAACTTCTGGAGGTATTTTCTGTTCTCTCTGAGGAATGAGAGCCTGAGCATGAGGTCTTCGGGAGGATAACCGGGAAGAAAGAGCTCCGGGAAGACAAGGAGATCACTTCCCCGGTCTTCCGCCACTCTGAGGGCTTCTATTGCCTTCTTCAGATTTCCCTCGAAGTCTCCAAGGGTCGGATTAAGCTGAGCCAGTGTCACTCTCAGTCTTTTCATAGGATCCCTCCATTATCCGGTACATCGAGTAGACCAGAACGACTCTCAAGAGATTCGATATTATGGAACCCAGGTACGGTATGAACCAGACGATGAACACAACGGCTGCAGCGAGGAAAACGTCCACCGTCTTTTCCCCTTTGAACACCATTCTGTAGTTCTTTTCCAGGACGCTGGAAGGAGATTCGTCTTTAGCGGAGAGCAGGGGGACAAAGAAGAGAAACATGAAGGCCACAAAACCGGGAAGGACGAACAGAGAAAAACCAGCACTTACCGTCAACCCGTAAAACGCTGAAAACACGAGAAGACTGAGAAGATTTTCTCTTCTTCTTGGAACCAGAAGTAGTCCCATCAACAATGCGAGCAGTACCTCTTCAAAGAGTTTTATGACGAAGAAATCGAAGCTCAGAAAATCGTACTTTCCGGCAAAGATGTAAAGCACTTCCGTCACAAACCCCAGAACGAGAGCCATAACGCTTATCACAGCGAGTTTTGTATTTTGAACTATCTCCCTGAATCCTTTAACGAAACTCTCGATCACACTTATCCCCCCTCACCTCCGTACTCGATTCTCCAGTCTGAGGATACCTTCCCAACGACTGTTCCATCCACTCTGGCCAGAACCTCGTCCACCTTTTGTTTTTCCACGATCAGAAACATTCCAACACCCATGTTGAAGGTGTTGACCGCTTCGTTGAAGTCTACATATTTCAATATCCAATCAACGAAGTCCCTCTTTGGTAGAGAAACGTGCGCCCCAAGCTTTCCGAGGACTCTCTTCAGCGCCCTCACCACTCCCCCGCCGGTCACGTGTGCGATCCCTTTCACCAGATCGAACAACTCGATGACTTCTCTGTATATGCGTGTTCCTTTCAGGAGTTCAAAGGGAAGTTCTTCGATCTTTATGGATTCCTCCTTTATGATCCTTCTTATGAGGGACCAGCCGTTCGAGTGGAATCCCGATGACGGAATACCAACGATCACATCCCCTTCTTTTATCTTATCAACCGGTATCCGTTTTTCTAAAACGCCGACAGCGAACCCCACAGCGTCCCAGTCTCCACGATACACATCGGGCATCTCAGCGGTCTCACCGCCCACCAGTTTCACATCCACGCTGTCAAGGACGTTTACGAGCTCTTTTATGAACGACTCGTGTTCTTCGGAGATTCTCTCGACCCCAAGGTAGTCCAGAAAGGCCACAGGCCTCGCTCCCACGCAGACCAGATCGTTGTAGTTCATACCCACAAGGTCCTCAGCCGCGTAGCGCCAGGTCCCGTGCTTTCTGTGAAGGATGAGTTTGGTGCCGATCCCATCGGCCGTTACAACAACGGGGGGAGTTGTGATCGTGAGTATGGAAGCGTATCCCGTGGGCTCTTTCATCACCCATTCAGGAAGTTTTACAGCGCTTTTTATAGTTTTTGCGAAGCTTTCTCCCCTCTCGACATCGACTCCTGCTTCTCTGTAAGTGTATTTCATAGAGCGATATCCCTCCTGTAGGTCTTACCTTCGAAGTGGACCTTTTCCGCGAGTTCGTAAGCCTTTCTTCGTGCCTCTTCTTTCGTCTCTCCCGTTCCCATGCAGTGAAGAACACGACCGCCATTGGTTACGAGTTTTCCATCTTTCTCCGCGACTCCCGCGAAGAATATGAGACCTTCTTCGGGAAGGGTGATCTCTTTGCCCTTTTCGGGAGCGTCGGGATAGCCCCTCGCTGCGAGAACCACGTCCACGGCGAATCCACGCGGTTCCACCGGCTCCATTTTACCACCGCGGTATCCCTCGAGAACCGCGTTGACAAATCCTTCGGGATTCAACGTCACTATCACTTCTGTTTCTGGATCGCCCAGTCTCACGTTGTACTCGAGTATGTAGGGATCACCATCGTGGAGCATGAGACCCAAGTAGAGGAACCCCCGGTACGCGTAGCCTTCTTTCTCCACTCCCCACAGAGTCTTATCGAAGAGCTCTTCGATCTTTTTGATCGTATCGGAAGGGATTTCTACAGGCCCCCAGGAGCCCATACCTCCCGTGTTCGGTCCCCTGTCACCGTCCATCAGTCTCTTGTAATCTCTGACGAAGGGAAGGATCACGAAATTTCTTCCATTCACGACCGCCATGGCGGAAAGCTCGTTCCCGGCGAGAAATTCATCTATCACAACAGGGCCTTTCACACCTTTTATGAGCTCTCCGATGATGAGTTTCGATCCCTTTTCGATGGTTTCTTCCTTAGAGTCGAGGATCAGAACACCCTTTCCTCGAGCGAGCCCGTCCGCCTTTATCACGTAAGGAGGAGAGAATTTTTTTATCTTCTCTCTCAATTCCTCTGGAGTTTCTGCCACTTCGAAACGAGCGGTTCTTATACCGTACTTCTTCATGAACCTTTTGGCATAGACCTTGGATCCTTCGAGCCTTGCGACCTCTTTCACCGGGCCAAAGACGTTGGATCTCCAGTTCGAGACCCCTTCTACCAGGAATTCCTCGGATCCCGGTATCACGATGTCTTCTTCGGGAATGGCTTTCAAGGTTTTTTCCCCTTCATAGGGATGGTTCGTTCCATCTCTCTTCGTTCCGGCGTTTCCCGGATAGAAGTGGACTTCGTACCCCTGCTTTGCGAAAGCCCATCCTATCGCGTGTTCCCTTCCTCCAGAACCGAGTATGTGTACCCTCACCGCTTTCACCCCTCAGTGCCTGAAAACCCTGCTCGGAGCTTTGTAGAACGTGATTCCAAGTTCTCTGGCTTTTTCGATCACTTCTTCGTCTCTTATGGATCCGAGAGGAGCGACCACCGCTTTCACACCAGCCTGAGCGAGTATTTCGAGCGAGTCCGGGAACGGGAAGAACGCATCGGAAGCCGCAACCGCTCCCTTCGCTTTTTCTCCTGCCATCACGGTGGCGATCCAGGCAGCTCTCTTTCTCGAAGGCTGCCCGCTCCCTATTCCCACAGTTACACCGTCTTTTGCTATGAGAACAGCGTTGGATTTCGCTCCTTCCACAACACGGTAAGCGAATTCCAGATCCTCAAGCTCTTTTTCCGAGAGAGGCTCTCCAACTACCAGTTCAAAATTCCCTTCGGGGTACTTTCTTTCACTCAGGACGAGAGAACCGAATGCCATCTTTCCAGCCCACGAAGCGTAATCCCCAGGCTTCAAGAGACGCACTTTTTTCTTAGAGAGAACCTCGATCGCTTCCTGTGTGAAGGAAGGTGCCACGATCACCTCGAGGTACTTTTTCAATGACTTCGCAACTTCTTCGTCCATTTCGAAGTTCACGGCCAGGATCCCTCCAAAACTGGATTCGTCGTCCGCCTCGATGGCCTTCTTCACGATTTCCACTTTGTCTTCTCCTATCGCAGCACCACAGGGAGATTGGTGTTTCACCACAACCGCACCCATCCTCGGCAGGTTCTTCGCCATGAACCACGCGTTTTCCGCGTCTAAGATGTTGTTGAATGAGATTGTCTTTCCTTCGTGCAGAATCTCAAAAGCTGGTTTTCCATACACAAACGCTTTTTCGTGAGGGTTCTCTCCGTACCTCAGCTGAAGATCTTCCCTCTTGAAGGCGAGAGAAATACCCTCGACAAACTGGTTGGCCCTTATCGAATCGTACACACTGGTGAACGCAAAGGTCATTCCAGCGAGGTACTTTCTCGTCTCTTCGTCGTCTATCTCAATCGCGAGTTTGAGTGTTTCCATGTCGAAAGCGGGTTTCACCTTTTTCCAGTTTTTGGCAGCTGCTCGAAGAAGAGCGACTCCTCCTATGTCGATGTCTGGGGGTGGATATAGGTCCACAAAGACCACATCCCATCTGGGTTCCGGTCCGAGGATGCCGGCGAATATCTCCGGGTGGAGGGTCTTCACGAGCCCTCCGAGGAGATTCTCGAAACCCGTTATGGTGCTCACGTCGTTTGCTTCTATTCCGTTTGATTTCAAAAACTTGGCGGTGCCGGAGCTCGCCCAGATCTCCCAGCCTTTTTCGTGGAGTTCTCTCAGAATATCCAGATATTTTTCTTTCTCGTAGAGACTAACCAATATCCTCTTCAAGGATAACCCTCCTTCCTTCGATCTTCCATTTTCCTTCCAGTACCTTTTGAATGACGAGCGGATAATACCGATGTTCTATCTTATGGATCTCTTCTTCCAGTCTTTCGAGAGACCAGTCTTTCTTTATTTCAACTGCTTTCTGAAAGATGATGGGACCGGTGTCGACTCCCTCATCAACGAAGTGGATGGTGATTCCTGTGACCTTCACACCGTATTCGTAGGCCTTCTCGATGGCGTGGGTCCCGGGGAACGCGGGAAGAAGCGAAGGGTGGATGTTGACGATCTTCCACTTCCACCTTTCGACGATCTCCGCCGGAAGAATCCTCATGAAACCGGCGAGGACCACGAGGTCGGGATTCAACTCTTCGAGTCTTTTTTTCAGAGACTCTGCCCAGGGTTTCTCGAGCCTTTCCCAGGGGATCTGCAGTCTTTTCGCTCGCTCTATTGCGTAGCAGTTTCTGTCCACAAGGAGCATCTGGATTTCCGCACTCAATTCACCGCTTCGCGCTGCGTTCACGATCGCTTCGAAATTGCTTCCGTTTCCCGAAGCGAGAACGACTATTCGTGGAGGTACTCCCCGCTGAAGCACGCTACACACAGTTCACTCCTCCCAATGGCTCTTTTCAACCCTTCGAGTGAAAGGTAAAAGAGAGAGTCTGCGTTGACTATTTTTTTCACTTCTTCCACGGCACGTTCTCCCGCGACGAGCTCTTTCTTTCTGGCGGTATCTATTCCGTAGAAACAGGGAAAACGTACAGGTGGAGAGTGTATGCCAACGTGTACTTCCTTCGCACCCGCCTCTCTCAATATCTTCACGATGATGCCCATGGTTGTTCCTCTGACGATCGAATCATCGATTACAACAACCCTCTTTCCACTCACAACGTCTTCTATGGGGACGAGTTTTTTCTTGACGATCTTTTCCCTGTCCACCGGCATGATGAAACTTCTTCCCACATATCTGTTCCTCATGAGACCGATGTCGAGAGGTATACCCGAAGCCGAAGAAAATCCCATCGCTCCGGAAAGTCCGGAGTCCAGCACCGGAACGACCACGTCCGCTTCTATCGGGTTTTCTCTGTAGAGTTCTTCACCCATTCTGTAACGGGCTATGTGTACACTCTGATCGAGAAAGTGACTGTCCGGCCTCGCGAAATAGATGAATTCGAAGGAGCAGAACCGCTTTTCTTTTTTGGAGAACCTCACCGTTTCTGTGCCTTTGTTCGAGAAGAACACGACCGTTCCAGAGGGAACTTCTTCTATGTCTTCCACACCTATCGCTTTCAGCGCTGCGTCTTCCGATGCCACAACGATTCCATCACCGTATTTTCCATAGAACAGGGGACGGACGCCGTATGGGTCTCTCGCCGCAGCGAGGAATTCTTCGTGTAGAATGAGAAGTGAGTAGGCAAGAGGGACTTTCTTCAGCGCTTTCACTATGGACTCTTTCAGGTCACCTTCAGACATCGAGATGAGATGAAGGAAGACCTCCGAGTCGAGCGAGCTCTGGAAAACCGCTCCTTTTTCTTTGAGCATCTCTATCCACTTTTCGCCGTTGGGTATGTTTCCGTTGTGAGCGATCGCGAGCCTTCCCTTTCTCGTGAACGCCACGATTGGCTGAATGTCCTCGAGCGATCCTGCCGTGGAGTACCTTACGTGTCCAATACCCTTTTCAGCGTCTTCCCACCTGTCTTCGGTGAGAACGGTGTCTACGAGTCCTTTTCCTTTTATCGTTTTGAACCCGTCTACCACAACACCCACACTTTCCTGTCCTCTATGCTGAAGACCGAGAAGCACGTCGTGAAGGACAGAAAAGGCATCTTTCACATTCCAGACTCCTGCGATTCCGCACATATCATCACCTCGAGAGCGTTCCGATCTCCTTCACAGGAACATCGACTACGGGAGTTCTCTCAGAGAAGACGAGCACCATCTGATGCGCCGGCCTCACTTCTGGCAGTTTCACTTCGATCTTCAAGCCGTACTCTCTGAAAGTCTCCACGTGAGTTCTCGTCAGAAGCTGTGACGAAGAGAGGATGAAAGCACCTTCTTCTGAGAGTTTTCTTATGGCTCTCCAGAGTTCTTTTTCCCTTTCGAGTTCGAAGTCGTTCCATCCCACCGCGAACACCTTCGAAGGCTTCGGTTTTGCCACTTTCTGCGGGTTCACCTTCCCCAACATTCCCACAACCAGGGTGGGTGGAATGGGTTTTCCCTGGTACGTGTTGTAGAGAGAAGCGTTTCCCGATGCAACGGGAACACCGGAGAATTCGCAAGCGTTCTTGAGAGCGGTCATCATGGCCGAAAGTCCCACCGGATCAACATCGGGATCCCCGTAGTTCACGCAGTTCGTTATAGCGAGGGGTTCCGCACCAACGCTGAGCGTCTTTCTCACACTCTCGAGCACGGCTATGAAGGTTCCCCAGTAGGTATCCTGAAGAGCCAGATCCGCCCTGCTGTGTGTGACGAGGGAGTACCCCCCGTCTCTCTTTATTCTCATCACGGCCGCGCCGAATCCGGGTGGAACCACGGTATCCGTTCCGACCATGTGATCGTACTGCTCGAAGACTTCCCTCGCGTTCACCTCTTCGAATTCCACCCTTTTGAACTCTGGGATCTTTCCGGGTGTGTATTCGACTATGTCCTCTTCTGGGGCGTTTGCGAGGAGCTGGACGGGAACTTCCATGACGAGATCGTTTCTGTACATCACCCTGTAAACTGGTTCTTCTATCACTTCGGCAACGATATCGCCGAAAAGAAGGTGCTTCCTGGCTATTTCCAGAATGCGGCTCGCCTTCTGAGGTGATGTGACGACCGCCATTCTTTCTTGGCTTTCGCTTATGAGGATTTCCCAGGGCTCCATATCCGGTTCTCTCAGGGGAACACGGTCCAGATGAACGATCGCTCCGAGATTCCCCTTCGCTACGAGTTCCGAAGTTGCGGACAGCACACCGCCCGCTCCCAGATCCTGAGCTCCTTCCACGAGTCCCTCTTCCACCATCTCCAGGAACGCTTCTATGAGCATCTTTTCAGCGAACGGGTCACCAACCTGAATTGAAAGCTTGGTTGCCTTATCACCCGTGAGATCCTCCGAAGCGAAAGACGCCCCGTGGATTCCGTCCCTTCCTGTGGCTCCTCCGAAGATCACTATGACCTGTCCCGGTCTCGATGCTTTCGAATCGACCAGCATGTCGTTTCTCACAACACCCGCTGCGAGCACGTTCACGAGGGGGTTGTGCGCGTATAGTGAGGAGATCCTGAGTTCTCCACCGACCGTTGGAACGCCTATGGAATTACCGTAATCGGCTATTCCCTCTATGATACCGTCTATGATTCGGGACATGTGGAGTGAATCGAATATGACCGTTGGGCGGGCTCCCATCGCGAGGACGTCTCTGATGATTCCACCGACACCCGTTGCTGCACCGTTGTAAGGTTCTATCGCACTCGGGTGATTGTGGCTCTCTATCTTGAAAGCAACGGAATAGTAATCATCCAGGTTCACCACACCCGCGTTTCCCTCAAAACCCGTTTTCGGTAATCTTCTTATGTATTTCTTCGTGTGGGAGTATCCACAGTGTTCGCTCCACATGACTGAAAAAGCCTGAAGCTCGACGAAGGTGGGTTCTCTTCCAAGCTTCTCCTTGAGAATGTTCAGATATCTCAACTTCAT

Protein sequences of DBSCAN-SWA_3

>NC_010483|1568934:1586854|1575537_1576671_-|WP_011943945.1|DBSCAN-SWA
MVSRRISEIPISKTMELDAKAKALIKKGEDVINLTAGEPDFPTPEPVVEEAMRFLQKGEVKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMALLDPGDEVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGAFYLFFKVRGDDVKFCERLLEEKKVALVPGSAFLKPGFVRLSFATSIERLTEALDRIEDFLNSR
>NC_010483|1568934:1586854|1571989_1573825_-|WP_011943943.1|DBSCAN-SWA
MSGRKIGVVTGIFQSSPYEFFVRMTAEKPGEAYKVFAQIEDVVKVEYLTGYGTVVTYGMIVDIQNRWDGDLRNGYEEEVALEKLKPAYPIYIAKVKVTRSFLKEGDKLLEDAPEIPPNIGSPVFLVGDEEIDIALGFDELKRKNVALPVGLLKNGRPAYLDLRYILGDNGAHINVSGQSGVAAKTSYTTFLVKSMIETSSKNDGDLMRELREARYIIFNVKGESLLFLDRISKEWYSEREKWDEMYRVLGIEPKPFENVAFYAPSREKGAYIPDVNKRLIGVNVYGWDVFDIVEMNLLELMFDPDEMTRNQNFQLAVWSLQEHLSQRMEEMYQEFLKEGYIVDRKKLPSEALREVVMKKGEVVDLPLDLDSLIKDLGEGGRTREYLLGEHVQKQTIGMLIRRLKAAQKMDFDRLWVKPPLKVEPWQTNYRIDWNVPGRVTVIDISKLRERAQAFVVGAILSEVMREKERNSGFTQPVFIFLDELNKYAPRHGGGALANIFRDVAERGRSFRVILIGAEQTASEVDYRVITQAATVVVGRQKGAELIKPEYSHLTEHYKRKAALLRQGEVIIDQPFLNLPLTVKFPLPAWCTREGGWHNPEGKTWEEEEFII
>NC_010483|1568934:1586854|1569703_1570402_+|WP_012311193.1|DBSCAN-SWA
MVDHVHFERELTLLKSDVSKMLFLVSESLNDAIESLETMNETLAKKVLDSDDMIDELNREIEEKAYQIIARYNPILKQLRYIITILKFSNDLERIGDLSCNIAEKCLFLSERKIRFEMLKEIKDMFGSTLRVVQDSFKAFVEEDVDSAYRLWKFDDVIDEMEKKIRRIVVERIREGNISAELALVYILIARDLERVGDHANNLCEEVIYIETGKNMKEFLRGVESGSEGADS
>NC_010483|1568934:1586854|1570376_1571057_+|WP_004080003.1|DBSCAN-SWA
MGVKVLIAEDDEDIRSVLKRYLETEGYECDEAESLFDLKKKLSEGTYNVLLLDLMFPDGVAMDEIPEMKVSHPEMAIIIISARDRDMDRIFGIELGADDYVTKPFNPREVLARVKAVLRRMGKEQKVLRFGRLEIFPEDYIVRYDGKNVEMTAKEFELLKLLATTPNKVFSREEILNRVWGDDYVSDRVVDVHISAIRSKIGKGWIKTVRGLGYKFSTRGDEGDRA
>NC_010483|1568934:1586854|1577413_1579144_-|WP_012311196.1|DBSCAN-SWA
MKRLRVTLAQLNPTLGDFEGNLKKAIEALRVAEDRGSDLLVFPELFLPGYPPEDLMLRLSFLRENRKYLQKFAQHTRNLGVTVLMGFIDSDEDAYNAAAVVKGGEILGVYRKISLPNYGVFDERRYFKPGEELLVVKIGNIKVGVTICEDIWNPVEPSASLSLGEGVHLIANLSASPYHVGKPVLRKDYLSMKAYDYHVAMAYCNMVGGQDELVFDGGSMVVDASGEVINYGKLFEEEIITVDLDLDENLRVSLVDPRRRYMKTQNYPVKTVEAGNLREKSGHFEPVVNPLPVREEEMFRALITGLRDYVRKNGFEKVVIGLSGGMDSSLVAVIATEALGKENVKGVLMPSMYTSKESIEDAQTLAKNLGIETFIIPITDVFHSYLETLKGVFAGREPDITEENLQARIRGNYLMALSNKFGWLVLTTGNKSEMATGYATLYGDMAGGFAVIKDVYKTDVYRIGRWYNSWRGKEIIPENIFVKPPTAELRPGQTDQEKLPPYEVLDEILRLYIEEGLDPEEIASKGFDRKTVLDVTEMIRKNEYKRKQAAIGVKISTRAFGKDWRMPITNRFKEPL
>NC_010483|1568934:1586854|1585042_1586854_-|WP_148202955.1|DBSCAN-SWA
MKLRYLNILKEKLGREPTFVELQAFSVMWSEHCGYSHTKKYIRRLPKTGFEGNAGVVNLDDYYSVAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGARPTVIFDSLHMSRIIDGIIEGIADYGNSIGVPTVGGELRISSLYAHNPLVNVLAAGVVRNDMLVDSKASRPGQVIVIFGGATGRDGIHGASFASEDLTGDKATKLSIQVGDPFAEKMLIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIVHLDRVPLREPDMEPWEILISESQERMAVVTSPQKASRILEIARKHLLFGDIVAEVIEEPVYRVMYRNDLVMEVPVQLLANAPEEDIVEYTPGKIPEFKRVEFEEVNAREVFEQYDHMVGTDTVVPPGFGAAVMRIKRDGGYSLVTHSRADLALQDTYWGTFIAVLESVRKTLSVGAEPLAITNCVNYGDPDVDPVGLSAMMTALKNACEFSGVPVASGNASLYNTYQGKPIPPTLVVGMLGKVNPQKVAKPKPSKVFAVGWNDFELEREKELWRAIRKLSEEGAFILSSSQLLTRTHVETFREYGLKIEVKLPEVRPAHQMVLVFSERTPVVDVPVKEIGTLSR
>NC_010483|1568934:1586854|1583742_1585038_-|WP_004080018.1|DBSCAN-SWA
MCGIAGVWNVKDAFSVLHDVLLGLQHRGQESVGVVVDGFKTIKGKGLVDTVLTEDRWEDAEKGIGHVRYSTAGSLEDIQPIVAFTRKGRLAIAHNGNIPNGEKWIEMLKEKGAVFQSSLDSEVFLHLISMSEGDLKESIVKALKKVPLAYSLLILHEEFLAAARDPYGVRPLFYGKYGDGIVVASEDAALKAIGVEDIEEVPSGTVVFFSNKGTETVRFSKKEKRFCSFEFIYFARPDSHFLDQSVHIARYRMGEELYRENPIEADVVVPVLDSGLSGAMGFSSASGIPLDIGLMRNRYVGRSFIMPVDREKIVKKKLVPIEDVVSGKRVVVIDDSIVRGTTMGIIVKILREAGAKEVHVGIHSPPVRFPCFYGIDTARKKELVAGERAVEEVKKIVNADSLFYLSLEGLKRAIGRSELCVACFSGEYLHE
>NC_010483|1568934:1586854|1580619_1581813_-|WP_004080013.1|DBSCAN-SWA
MRVHILGSGGREHAIGWAFAKQGYEVHFYPGNAGTKRDGTNHPYEGEKTLKAIPEEDIVIPGSEEFLVEGVSNWRSNVFGPVKEVARLEGSKVYAKRFMKKYGIRTARFEVAETPEELREKIKKFSPPYVIKADGLARGKGVLILDSKEETIEKGSKLIIGELIKGVKGPVVIDEFLAGNELSAMAVVNGRNFVILPFVRDYKRLMDGDRGPNTGGMGSWGPVEIPSDTIKKIEELFDKTLWGVEKEGYAYRGFLYLGLMLHDGDPYILEYNVRLGDPETEVIVTLNPEGFVNAVLEGYRGGKMEPVEPRGFAVDVVLAARGYPDAPEKGKEITLPEEGLIFFAGVAEKDGKLVTNGGRVLHCMGTGETKEEARRKAYELAEKVHFEGKTYRRDIAL
>NC_010483|1568934:1586854|1581825_1583184_-|WP_004080014.1|DBSCAN-SWA
MKRILVSLYEKEKYLDILRELHEKGWEIWASSGTAKFLKSNGIEANDVSTITGFENLLGGLVKTLHPEIFAGILGPEPRWDVVFVDLYPPPDIDIGGVALLRAAAKNWKKVKPAFDMETLKLAIEIDDEETRKYLAGMTFAFTSVYDSIRANQFVEGISLAFKREDLQLRYGENPHEKAFVYGKPAFEILHEGKTISFNNILDAENAWFMAKNLPRMGAVVVKHQSPCGAAIGEDKVEIVKKAIEADDESSFGGILAVNFEMDEEVAKSLKKYLEVIVAPSFTQEAIEVLSKKKVRLLKPGDYASWAGKMAFGSLVLSERKYPEGNFELVVGEPLSEKELEDLEFAYRVVEGAKSNAVLIAKDGVTVGIGSGQPSRKRAAWIATVMAGEKAKGAVAASDAFFPFPDSLEILAQAGVKAVVAPLGSIRDEEVIEKARELGITFYKAPSRVFRH
>NC_010483|1568934:1586854|1573829_1575563_-|WP_012311194.1|DBSCAN-SWA
MKTSSILVDFLKRNWHKYLLGVLSLIAVDLLQVYIPRVIGKIVDMLNTETMNFDTLKIMLFWVMAAASGMFIGRFFWRFFFGGTARKFFLETSNKMFSKLLSLTPGFFDRMKSGELMARFTNDLSLLRRVLGQGAILFFDSFIMIVMVFFFMIGNVGWKLSWISFAPLLLLAPVSMSFGRLIHRKVSEVQRSFSELSGFTEETISSVRIVKSFSVEDVSFKIFENRALKNYEDTLSAIKVSSVFRPLINLIASTAFFLALLYGGRAVINGKISLGDFIAFNSYLGMLVWPMMAYGFMVDLFQRGRAAMRRLDTIFTAQPEVKEPEKPIRIDHFESFEVRNLTYRYPGTEREVLKNVTMKINRGEMIGIAGSVGSGKSTIAKLLVKLYPVERGKIFINGVDINDVSSENIRSIVTLVPQETFLFSDTVRNNITVGLENVDEKKIEEVTKLAAVYDDIMSFPEKFDTIVGERGVTLSGGQKQRITIARALIRDFEVYIFDDCLSAVDPETEERIIDSIRKGMKGKTIVVITHRLKVLKNADRIYVLHEGRVIEEGTHEELMIRDGMYSRMYRKQLIEEG
>NC_010483|1568934:1586854|1583164_1583782_-|WP_012311197.1|DBSCAN-SWA
MCSVLQRGVPPRIVVLASGNGSNFEAIVNAARSGELSAEIQMLLVDRNCYAIERAKRLQIPWERLEKPWAESLKKRLEELNPDLVVLAGFMRILPAEIVERWKWKIVNIHPSLLPAFPGTHAIEKAYEYGVKVTGITIHFVDEGVDTGPIIFQKAVEIKKDWSLERLEEEIHKIEHRYYPLVIQKVLEGKWKIEGRRVILEEDIG
>NC_010483|1568934:1586854|1576779_1577430_+|WP_012311195.1|DBSCAN-SWA
MEAVIFDMDGVLMDTEPLYFEAYRRVAESYGKPYTEDLHRRIMGVPEREGLPILMEALEIKDSLENFKKRVHEEKKRVFSELLKENPGVREALEFVKSERIKLALATSTPQREALERLRRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLERLNVVPEKVVVFEDSKSGVEAAKSAGIERIYGVVHSLNDGKALLEAGAVALVKPEEILNVLKEVL
>NC_010483|1568934:1586854|1568934_1569690_+|WP_012311192.1|DBSCAN-SWA
MEPIIEIENFSAYYGDKVAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPKLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGTKSKHVLDRIVEESLKKAALWDEVKSELNKPGTKLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELVEYGPTREIVERPKSKLTEEYLTGKIG
>NC_010483|1568934:1586854|1571037_1571997_+|WP_004080004.1|DBSCAN-SWA
MRVIELEDLDHIREAIVILKGLEVEGANKPGEKLGFKKGKNLMSIFTCKEMDRFIRDVQERKNFSLETNAYFFELHSKRFVSLRYLPKKSLLFVNDLTEERTLSEAKLDFVTAVSHELFTPLSASKANVFLLKDIENDPEKLEILGKVERSLDRMETIIRQLKVLTMIQLRLYELKMEHIPVEEVVHMVLEELREKIESKKIKVNVFVDVETIETDRFVFHTILKNLVSNAVKYSYPDSVVEISITGERLSVKDQGIGIKEEEKSRIFERFYRGSEALKMAPGSGLGLSIVKHLCDTIGYRLEVNSQWLVGSEFIVHFK
>NC_010483|1568934:1586854|1579109_1579685_-|WP_004080011.1|DBSCAN-SWA
MIESFVKGFREIVQNTKLAVISVMALVLGFVTEVLYIFAGKYDFLSFDFFVIKLFEEVLLALLMGLLLVPRRRENLLSLLVFSAFYGLTVSAGFSLFVLPGFVAFMFLFFVPLLSAKDESPSSVLEKNYRMVFKGEKTVDVFLAAAVVFIVWFIPYLGSIISNLLRVVLVYSMYRIMEGSYEKTESDTGSA
>NC_010483|1568934:1586854|1579687_1580623_-|WP_004080012.1|DBSCAN-SWA
MKYTYREAGVDVERGESFAKTIKSAVKLPEWVMKEPTGYASILTITTPPVVVTADGIGTKLILHRKHGTWRYAAEDLVGMNYNDLVCVGARPVAFLDYLGVERISEEHESFIKELVNVLDSVDVKLVGGETAEMPDVYRGDWDAVGFAVGVLEKRIPVDKIKEGDVIVGIPSSGFHSNGWSLIRRIIKEESIKIEELPFELLKGTRIYREVIELFDLVKGIAHVTGGGVVRALKRVLGKLGAHVSLPKRDFVDWILKYVDFNEAVNTFNMGVGMFLIVEKQKVDEVLARVDGTVVGKVSSDWRIEYGGEGG

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012311192.1|1568934_1569690_+	phosphate ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	9.3e-17	29.4
WP_012311193.1|1569703_1570402_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_004080003.1|1570376_1571057_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.8e-28	32.6
WP_004080004.1|1571037_1571997_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.6e-16	28.7
WP_011943943.1|1571989_1573825_-	ATP-binding protein	A0A139ZPI2	Marinitoga_camini_virus	1.6e-30	28.0
WP_012311194.1|1573829_1575563_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.8e-40	26.7
WP_011943945.1|1575537_1576671_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_012311195.1|1576779_1577430_+	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	1.1e-10	26.6
WP_012311196.1|1577413_1579144_-	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	1.4e-92	36.6
WP_004080011.1|1579109_1579685_-	hypothetical protein	NA	NA	NA	NA
WP_004080012.1|1579687_1580623_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3HQK7	Synechococcus_phage	1.4e-38	35.5
WP_004080013.1|1580619_1581813_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_004080014.1|1581825_1583184_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	1.2e-41	39.1
WP_012311197.1|1583164_1583782_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.9e-26	39.5
WP_004080018.1|1583742_1585038_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.6e-46	32.5
WP_148202955.1|1585042_1586854_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.2e-78	33.7

Sequences of DBSCAN-SWA_4

Nucleotide sequences of DBSCAN-SWA_4

>NC_010483|1732233:1740952|DBSCAN-SWA
TTCATGCTCTCTCCTTCAAAAGCTTTTCGTAGGCGATTCTTGCAGCCTCCTTTTCCGCTTCTTTCTTTGTTCTACCCCTGCCCGTGGCGATGGTCTTCCCATCCACCCTCACTTCCACAACAAAAATCCTGTCACCATCGTTTTTTTCTGTTCTCACCAGTACATATTCTGGTGGCACCTTGTGTTCGCTCTGAACTATTTCCTGGAGAGCCGTTTTGTAGTCGAAGAGCATTTCACCCTTCATGATCTTTTCTATGTAGAACTCGAATTCCTGCTCAAATAGCTCCTTTATCTTCTCATAGCCCTGATCGAGGTATATGGCAGCCAGAAGCGCTTCGAACGCGTCGGCGAGTATGGAATCTCTATCACGTCCACCAGTTTTTTCCTCTCCCTTTCCAAGGAACAAGAATTTGCCAAGATTCATCTTCCTGGAAACCAGGGCGAGAACTTCTTCGCTCGCCGCTGCGGATTTCACCCGGGCCAGGTCCCCCACTTCCGCTTCCGGATACTTTTTGTAAAGTATTTCGCACACGAAGAGTTCTAGAACGGCGTCCCCCAGAAACTCCAGCTTTTCGTTCGATTCCACGTTCTTTCTTCCCGCTTGATTTTGCTCGTTCGCGTAAGAACTGTGGCACAGAGCCCGAAAGAGAAGTTCTTCGTTCTTGAAGTTGATTCCTGTTTTTTTCTGAAACTCCTCCACGATCTTTCTCTCACTCTCGTTCAACGAACATCACCTCTTTCAAAACATCACCTTCCAGCGAGCAGAGGTAGTATTTTTTCTCATCCGTATCGATGATACCAAAAGTCGGACCGACCTCAGATTTTGGAAGAGAAACCGATCCCGGATTCAAAAGCAGCACCCCTTCGCACCTTTCTGCCAGAGGAACGTGAGTGTGACCGAAAAGAACTACACTGCATCCATGAGCCTGTGCCAGACTCACAGGATCTCCTCCTTCGTATTCGAACTGGTCGCCGTGAACAAGGAGTATCTTTACATCTCCTAAAAATTCCATTCCGATCCTGGGCATTTCCGGAATTTCCAGAACCCTTATGTCCACATCTGCATCACAATTTCCGCGTATGTACTTCACACGGTGTTTCTTCAAAAGTGATGAGAGTTCCTTTGGACTGTATCCCTCGGGAAGCGGATTTCTGGGGCCGTGGTAGAGAACATCACCAAGATGCCAGATTTCATCGAAATTCCCCGCACTTTTCAAAGCTTTCTCTGTGCAAGAAAGTGAACCGTGGGTATCCGAGATCACAAGAATCCTCAAGGTCAACCCCTCCTGATAACGAACTTTCCCGATAGAACAGAAATGGAGAACAAAACAACTGTCCAGAGCGAGACGACAAAGATCGAGCGATTATCGATTGTGTGCTCCAGCTGGTATACCCTGAGGGCGTACATGGTTCTGAACACGGGCGTCGACATGGCGATTCTTCGGAGGATATCTGGCAAATTGCTTATAGGAATGGCAAAACCGCTTGAGAACAGGGATATTCCTATAACAGAAACACCGAGTATGTTTGCAAGACTCTTGTCGGGAGAAATGGAAGAAACCAGAAAACCCACGGACGTGTGAAGAAGAGCGTTGAGAAGGATGAGAACAGACGTAACGAAGAAGCCCAGGTTGTCTCCAGTCAGTATCACCGTCAGGGCGTAGGCTATGAAAGAAACGGAAGCTCCAATGACGGTGTAAGCAAGTATCTTCCCGCAGGCGTATTTCCGTGCCGGAAGGTTGTACACGAGGAACATCTCGTGCAGGTTTTTCTCTCTGTCGAGAAAGGTGGAGACACTCGCCAGTGATACGGTTATCAAAATCGCCGTGAAAAAGACGATGAAGGGGGAGATGAGATCAGAAAATCTGAGTTCTGAGTCTTTCAATGTCAATCTGGGTACGGGATAATCGGACTCTGTGAATATGTACCGGAGCACCTTGGGATCGAAGAAGGCACTTCCCTGGAAATCTGCCAGAACGGAATCGAGAACGTTGTATATCGCGGCGGCGAGGTGAAGATCGATGGGACTCGGGATGAAGATCATCTGGGTTGGCTGTTTGGAATACAGTTTCGCCGCGAAGCCCTTTGGAATCACTATGACCGCGTTCAGCTTTCCTTTCTTCAGAAGTTTTTCGTAGTTCTGATCGACTTTCACTATGTTTTCCTGTCTCAGGATGGTTCCAATGAATCTCATGACGAGGGAGGACCAGATGCTGTTGTCTTCGTTGTATATTCCGAGCTTCATCGTCTGAAGGTTGTACCCCTGCATGAAGAGAAGAGAGATCAGCACAACCAGAACGGGTGCAGCGATTATCATCATCAGTGAAGATCTTTTCTTCAAGATCCTCTTCAGTTCCACAATGGCTATTCTAAACATCGAGTTTCCACCTTCTTTCAACTTCCCTCACCACGTCTCTGTGGATTTCCTCTATGGAGCGTTTTCCATCCAGCACCACGATCCTTTCGGGATGTTCTCTGGCAAGCACGAGGTAGCCTTCCCTTACATGTTCGAGAAACTCTCTTTTTTCAAAGCGGTTGAGTTCTCCTTTTCTTTTGAGGGCCGTTTCGACGTCCACGTCTATGTAGAAAGTTAGGTCAGGAATCAGTCCATCCGTGGCAAGATCGTTCAACTCCTCCACGATCTCTTTTCCCAGGTTTCTTCCAAAACCCTGGTATGCAACACTGGAGTCCGTGTATCTGTCAAGAAGAACGGCGTATCCTTCGGAAAGGTACTGTTTTATTTCTGTCACAAGAAGATTTCTTGAAGCGAGAAATAGGAAGAGCTCAGCTTTGGGAGTTACTTCTTCCTCCAGAAGAATCTTTCTGATCTTCTCCCCCGTCTCCGTTCCGCCCGGCTCTCTCTTCAAGATCACTTTCTTTCCTCTCTTCTCCAGGTATTGAGCCAGAAGTTGGATCTGTGTGCTCTTCCCGGATCCGTCTATTCCCTCGAACGTTATGAACATTCCTTCCCCTCCTGGTCATAAGGATGAAGGCGACAAGATTGTTGGTGATATGGTACAGAACAGCGGGAAACAGAGATCCACTGACGGCTGCGCTGTGAGCGAATATGAGTGCGACGACGAATCTGTATATGAGGTTCGCAAAGGAAAATCTTTCGAAGCCCACGATCACGTTGAAGAGGTGAAGGAAAGAAAAAACGAGTGCGTTGGTCCATATGTCGTTTCCGTTCAGTTTCAAAAAAACTCCCCTGAAGAACAATTCTTCCGAGAAAGGAGACAGAAAAACCACCGAAACCATCACGATGAAGCGGTTCATGAAGGGTGGAAATCGAACTTCACTGCCTCCTAAGAAAAACACGTTCACGAAGAGGAGAATCAGGAACCAGTGTAGATCGACAAAGCTTACTCTGAACGATGGAACGTATCGAAAGGCCACACACACCGTCACAGCGCCGGCGAGTCCCAGCAGGGACTGATAGAAGATCGCCTTCTCGAATCGGTGTATCCTGAAGAGATTTATCGAAAACATGAACGCAAGATACAAAGCAAGGGCTATTATCGAGTAAAGAACGCTCACGGCTTCACCTCACAGCAGTGTTGCTATCATGACCGCTTTTATGGTGTGTTTTCTGTTCTCCGCCTCGTCCCAGACCCTGCTCTGTTTTCCCTCGATCACCTCGTAGGTGACCTCCTGGCCCTTCACCGCGGGGAGGCAGTGCATGAAAATCGTTTCTGATTTACCCGTCATTTCCATCACTCTCTCGTTCACCTGATAAGGCTTTAGGAGGGATATTCTCTCCTTTTCTTTGTCTTCCTCACCCATGGATGCCCACACGTCCGTGTAGACAACATCGGCACCTGCGAGTGCTTCTTCCAGATTTGATGTGAAAGAAATGCTCCCATCGGTTTCTTTCGCGATCTCCTGACACTTTTCGAATATGTCAGATCTGGGCTTGAGTTCTTCGGGACCACACGCCACGAAATTCATCCCCATCTTCGCACAGGCAATCATGAGGGAGGTCGCAACGTTGTTTCTGGTGTCCCCCATGAAAACAACCTTTACACCCTTCAATCTTCCGAAATTCTCCTCTATGGTCATCAGGTCGGCGAGCGCCTGTGTTGGGTGAAACTCGTCGGTGAGTCCGTTGTACACGGGAACACCGGAGTACTCAGCCAGCTTTTCCACAGTCTCCTGTTTGTAGCCCCTGAACATGATGGCGTCCACCATTCTTCCAAGGACGCGTGCGGTGTCCTCGAGAGATTCTTTCGCTCCAAGGTGTATGTCGTTCGGTGAGAGAAAGACCGGATGTCCTCCTTCTTCTGCAAAAGCGGTTTCAAAGGCGAGTCTCGTTCTCGTTGATCTCTTCTCGAAGATCATGGCAAGTGTCATTCCTTTGAACCTTTCGGTTCTCAGCCTGGATCTGCTTTCCATCTTCACCTGCTCTGAGATATCGAGAAGGTATCTGATCTCTTCAGGAGAAAAATCAAGAAGAGTGAGGAGAGATCTCCCTTTCAGATTCACAGACACACTTCACACCTCCACTATATCCTCGAGTTTTTCACCTGTGGATATGTACCTTACCGGTCTTCCTGTCTCTCTTTCTATGAAATCAACAAAGCGCTCGAAGTTCTTGTCTTCCAGAGATTTCCAGCCATCGAAGACTTCGTAGACAGGCTCTTTCTTTTCCAGATCTCTGAGTGAAACGAGATCTCTTCCATCGGAGTAGCGCACGCAGACCTTGATCTTTTCAAAACCGTTCAGCACATCTGCCTTGGTCATGACCAGAGAGTCGACACCGGAGATCTCAATGGCGTACCTGAGGAGCGGCAGATCGAGCCAGCCGCATCTCCTCGGCCGACCGGTCGTGGAACCGTATTCGTGTCCCGCTTTTCTCAACTTCTCTCCTTCTTCTCCTGTGAGCTCCGTCGGGAAGGGACCTTCCCCGACTCGTGTTGTGTACGCCTTGAAGACACCTAAAACTTCATCTACTTCTACAGGAAAGCCCATTCCCGCGCTCACGCCTGAGGAGGAACAGTTCATGCTCGTGACGTACGGGTACGTTCCCACGTCCAGATCCAGAAGAACCCCCTGTGTTCCTTCGAAGAGAACGCTCTTCTCTTCGAGGATTCTTTTCAACTGGACCGGTGAAACGACAAAGTCTTTTATTGTCTCATAGAAGGTGGAAAGATCTCCCATCATTTTCTCTGCGTCGAAATCCACCCCGTAGATCTTCTTCAAAGAGAGGTTCTTTTCGAGGAAATATCTGAGTTTTTCTTCGTTGCCGAGCTCTGCAACTCTCACGTTCACCCTCATAACCCTGTCAGCACAAGCGGGACCTATTCCTCTTTTCGTAGTGCCTATTTTCAACACTTCGTCTATTATCCTGTCCATTTCTTTGTGCACTGGAAGAACCACGTGTGCGCTCTCAGAGATGAAGATTTCACCTGAATAATCGGGAAATTTCTCTTTCAATTCCCTCAATTCTTCTGTCAGCACCTGAGGATCCAGGAGAACACCGCTTCCTATGGCGATTCCTCTGTTTTTTGTGAAATCGGCCGAAGGGAGGAGGTGGTGTATCACCTTGAAATTTCCATAATTCACAGTGTGCCCGGCATTCGCTCCGCCCGAAAATCTCGCCACGATATCGTGGTATCTGGAAAGATACGTTACCACCTTGCCCTTTCCTTCGTCTCCCCATTGAAGACCCACCACAACGCGGTTCATTCGCTTCACTCCTTTTCAAAGCGTTCGAAGATGTGGTCCACGTGTTTCAAGTAGTAAGAGATATCGAAGAGTTCTTCGAGCTCTTCTTTGGTAACCAGTTTCTTAACCTCTTCATCCTCGAGGAGGTACTCGAGGAAGTGTTTTTCGGAATTCCAGGTTTTCAGAGCGTTCCTCTGGACAATATCGTAAGCCTCTTTCCTTGTGAGTCCTTTCTCTATGAGTTTCAGCAGGACTCTCTGGGAGAACACGAGACCCTTTGTGAGATCTATGTTCTTCTTCATTCTTTCCTCGTTCACCTTCATGTTCCTCACCACGTTTGTGGCCGTGACGATCATGTAGTAAAGAGTCTGTGTGGCGTCGGGAAAAACGTATCTTTCGACGGAGGAGTGCGAAATGTCCCTCTCGTGCCAGAGCGCGATGTTTTCAAGGGAAGGATCGACGTACGCCCTCATCATTCTGGAAAGTCCCGTGAGTCGCTCGCAGGTGATGGGATTCTTCTTGTGGGGCATGGCGCTCGAACCTCTCTGGCCTTCTCTGAACGGTTCCTCCACCTCGAGCACTTCCGTTCTCTGAAGATGTCTGATCTCGACAGCGATCCTTTCTATCCCCGCTGCCACGATCGCGAGCGTGGACAGATAGAAAGCGTGACGATCCCTCGGGACAACCTGTGTGGAGACGGGTTCAGGTTTCAAGCCCAGGTACGAAAGCGCTTTTTCCTCCACCTCCGGTGGTACGTTTGCGTAGTTTCCAACAGCTCCACTGATCTTACCGTAAGAAACTTCCTCTATCGCCCTCTCAAGGCGTTGAACGTTCCTTTTCATCTCGGAATACCATCCGAGGACCTTCAAGCCGAAGGAGGTGGGTTCCGCGTGGACTCCGTGTGTTCTTCCGATGGTGGGGGTGTGTTTGTATCGATTCGCGACTTCCCAGAGCACGTCGCAGAACTCTTTTAGAGACTCTAACAGGATTTTCCCCGCTTCCACGAGAGCGAGGGAATTTGCGGTGTCGAGAACATCTGACGAAGTGAGACCGTAGTGGAAGAATCTCGAGTCTTCTCCTATCATCGATCCGATTCCTTCGACGAACGCCACCACATCGTGGTTCGTTCTCTCTTCTATCTTTTTGAACAGTTCCACATCTATCTTAGCGTTGTTCCTTATTCTCTCTGTCACTCCCTTCGGAATCGTTCCCAGTTCTTCGTACGCCCTCGTCACTGCCAGTTCCACTTCCAGCCATCTTCTGTACTTCGCTTCCTCCGTCCAGAGATCCTTCATCGGTGACAGCGAATACCTTTCTACCATCTTTTTCCCTCCCAAACAGATCTCTTATGAACACGAGCGCAACAACAGGAAAAACAAGATAAGAAGCCGTTGGATATTTAATACTCGCCACCTTCCACAACGCCATCGCAACGAGAAACCAGAAAAGCGATTTGAGAGGTATGTTCACGGCTTTTTTCTTTGCAAAACTGGTGACGATCAGAGGAAAGAAAGACAGCACCAGAAACAACTCGGCTCGATCGTAATTTGTTCCTTTCAAATATTCGAACCCCTCGAGGACGAGGAGAAAGATCAGACTCACATGAAACAGGGTCTTTTCTCTCTCACTTCTGGTGAAGAAGAAAATAACAGAAGCAATAAGAGCGAGTATCGATACAAAAGTACTGTCTTTCCAGGAGAGAACAGCGAAGATCAGAGAAAGTCCCAGACCTAACATCATCGATCCCCTTTCACGAGAGTCACAGCAGTTTCCACATGGTAAGTCTGAGGAAACATGTCGAAAGGCTTCACCCCGACAATAGAATAGCCGTTCTCCACCAGCACCTTGAGGTCTCTCACCAGAGTAGAAGGCTCACAAGAGACGTAAACGATCCTTTCGGGTGAAAGTCTCGCTATTTCTTTCATCGCTTCTGGACCCGCACCTGATCTCGGTGGGTCCAGGATTATCCTGTCTGCCCTTCCGCTGTAGTTTTTCAGAAAGTCCAGCACATCCTGTTCCACGTATTCTATGTTCCTTCTGCTGTTTATGTTCGCGTTAGCCTTTCCAGCCTTCACAGCGACCCTGCTGGATTCAACGGAGATCACCCTCGCTGCCGAAAAGGAAGTTCTCACGGAAAACGTACCGATACCCGCGTACAGATCCAGCACCACCTCGTTACCCTGAAGTGCCAGTTCTCTGTACACGTGATCTATCAGTTTGGATGTGATGGAGTAGTTGCTCTGGAAAAAGGCGGTCGGTGGAATTTGAAACCTTTCCCAGTCGAACTCTTCCACAATTACTCCTTCACCGTAGAGGGTTCTGTACGGTCCCCTTAGGACCACAGAGTCTTTAGAGTTCATCACATGAATGATGGAGTGAATCTTTGGAAATCTCTTTAACACAGCGCGAACCAGATCTCTTCCCCAGGGAAAGGATTCCGTCTTCGTCACAAAGATCACCATGAACTGGTCCGTGCTGAATGCGTACCTGATCACGAGGTGCTTGAGCACTCCCTTCCTCGTTTCCCAGTTGTAAACAGGAATGTTGAGTACCTGAACGGCCTCTTTTACAGTGTTCAGAATCTCACCCGTGCCTTCCGGTGCCACCTCACAGTCTTTTATGTCAATCACAAAATCGGAGTTTCTCTTTTTCAACCCCAATTTTCTTCCCTGAAAATGAAACTCCATTTTCGTCCTGTAGTGAAAAACAAGATCACTCGGCTCCACATCTTCCACTTCTACCTTCAGATTTGAGCGTTCGAAAAGATCGATCAATACCTCCTTTTTGTAACGAAGCTGGGTTTCATACTTCACATCCATCCAGTGACAGCCACCGCATCTTCCAAAGTATCTGCAGGGTGGTTTTGTTCGATCTTCGGATTCTTTCAGAAGGGAAACTACCTTTCCAAAAGAAAAATCCCTTTTCTCTCTGTAGGTTTTTATCAGGACTTCCTCACCGGGATACGCTCCTTCTACGAGAACTACCTTGCCGTTCGAAAGATGGGCAAGGCCGTAACCTCCGTTGATCATCTTCTGTATCCTCACCTGCTCCAGCAT

Protein sequences of DBSCAN-SWA_4

>NC_010483|1732233:1740952|1732233_1732956_-|WP_012311293.1|DBSCAN-SWA
MNESERKIVEEFQKKTGINFKNEELLFRALCHSSYANEQNQAGRKNVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLALVSRKMNLGKFLFLGKGEEKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSEHKVPPEYVLVRTEKNDGDRIFVVEVRVDGKTIATGRGRTKKEAEKEAARIAYEKLLKERA
>NC_010483|1732233:1740952|1736723_1737917_-|WP_012311298.1|DBSCAN-SWA
MNRVVVGLQWGDEGKGKVVTYLSRYHDIVARFSGGANAGHTVNYGNFKVIHHLLPSADFTKNRGIAIGSGVLLDPQVLTEELRELKEKFPDYSGEIFISESAHVVLPVHKEMDRIIDEVLKIGTTKRGIGPACADRVMRVNVRVAELGNEEKLRYFLEKNLSLKKIYGVDFDAEKMMGDLSTFYETIKDFVVSPVQLKRILEEKSVLFEGTQGVLLDLDVGTYPYVTSMNCSSSGVSAGMGFPVEVDEVLGVFKAYTTRVGEGPFPTELTGEEGEKLRKAGHEYGSTTGRPRRCGWLDLPLLRYAIEISGVDSLVMTKADVLNGFEKIKVCVRYSDGRDLVSLRDLEKKEPVYEVFDGWKSLEDKNFERFVDFIERETGRPVRYISTGEKLEDIVEV
>NC_010483|1732233:1740952|1732942_1733506_-|WP_012311294.1|DBSCAN-SWA
MRILVISDTHGSLSCTEKALKSAGNFDEIWHLGDVLYHGPRNPLPEGYSPKELSSLLKKHRVKYIRGNCDADVDIRVLEIPEMPRIGMEFLGDVKILLVHGDQFEYEGGDPVSLAQAHGCSVVLFGHTHVPLAERCEGVLLLNPGSVSLPKSEVGPTFGIIDTDEKKYYLCSLEGDVLKEVMFVERE
>NC_010483|1732233:1740952|1734601_1735195_-|WP_012311296.1|DBSCAN-SWA
MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDLATDGLIPDLTFYIDVDVETALKRKGELNRFEKREFLEHVREGYLVLAREHPERIVVLDGKRSIEEIHRDVVREVERRWKLDV
>NC_010483|1732233:1740952|1739632_1740952_-|WP_012311300.1|DBSCAN-SWA
MLEQVRIQKMINGGYGLAHLSNGKVVLVEGAYPGEEVLIKTYREKRDFSFGKVVSLLKESEDRTKPPCRYFGRCGGCHWMDVKYETQLRYKKEVLIDLFERSNLKVEVEDVEPSDLVFHYRTKMEFHFQGRKLGLKKRNSDFVIDIKDCEVAPEGTGEILNTVKEAVQVLNIPVYNWETRKGVLKHLVIRYAFSTDQFMVIFVTKTESFPWGRDLVRAVLKRFPKIHSIIHVMNSKDSVVLRGPYRTLYGEGVIVEEFDWERFQIPPTAFFQSNYSITSKLIDHVYRELALQGNEVVLDLYAGIGTFSVRTSFSAARVISVESSRVAVKAGKANANINSRRNIEYVEQDVLDFLKNYSGRADRIILDPPRSGAGPEAMKEIARLSPERIVYVSCEPSTLVRDLKVLVENGYSIVGVKPFDMFPQTYHVETAVTLVKGDR
>NC_010483|1732233:1740952|1735778_1736720_-|WP_012311297.1|DBSCAN-SWA
MSVNLKGRSLLTLLDFSPEEIRYLLDISEQVKMESRSRLRTERFKGMTLAMIFEKRSTRTRLAFETAFAEEGGHPVFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETVEKLAEYSGVPVYNGLTDEFHPTQALADLMTIEENFGRLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDIFEKCQEIAKETDGSISFTSNLEEALAGADVVYTDVWASMGEEDKEKERISLLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATLL
>NC_010483|1732233:1740952|1733508_1734609_-|WP_012311295.1|DBSCAN-SWA
MFRIAIVELKRILKKRSSLMMIIAAPVLVVLISLLFMQGYNLQTMKLGIYNEDNSIWSSLVMRFIGTILRQENIVKVDQNYEKLLKKGKLNAVIVIPKGFAAKLYSKQPTQMIFIPSPIDLHLAAAIYNVLDSVLADFQGSAFFDPKVLRYIFTESDYPVPRLTLKDSELRFSDLISPFIVFFTAILITVSLASVSTFLDREKNLHEMFLVYNLPARKYACGKILAYTVIGASVSFIAYALTVILTGDNLGFFVTSVLILLNALLHTSVGFLVSSISPDKSLANILGVSVIGISLFSSGFAIPISNLPDILRRIAMSTPVFRTMYALRVYQLEHTIDNRSIFVVSLWTVVLFSISVLSGKFVIRRG
>NC_010483|1732233:1740952|1737922_1739218_-|WP_012311299.1|DBSCAN-SWA
MVERYSLSPMKDLWTEEAKYRRWLEVELAVTRAYEELGTIPKGVTERIRNNAKIDVELFKKIEERTNHDVVAFVEGIGSMIGEDSRFFHYGLTSSDVLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPPEVEEKALSYLGLKPEPVSTQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFREGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLENIALWHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISYYLKHVDHIFERFEKE

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012311293.1|1732233_1732956_-	ribonuclease III	A0A167RGU4	Powai_lake_megavirus	5.2e-17	26.8
WP_012311294.1|1732942_1733506_-	phosphodiesterase	NA	NA	NA	NA
WP_012311295.1|1733508_1734609_-	ABC transporter permease	NA	NA	NA	NA
WP_012311296.1|1734601_1735195_-	dTMP kinase	M1PSC7	Streptococcus_phage	5.6e-33	41.9
WP_012311297.1|1735778_1736720_-	ornithine carbamoyltransferase	M1I6M4	Paramecium_bursaria_Chlorella_virus	1.4e-22	29.7
WP_012311298.1|1736723_1737917_-	adenylosuccinate synthase	L7Y4J5	Megavirus	1.1e-51	33.5
WP_012311299.1|1737922_1739218_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.0e-18	28.5
WP_012311300.1|1739632_1740952_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.1e-47	27.5