CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_010487	Escherichia coli SMS-3-5 plasmid pSMS35_3, complete sequence	0 crisprs	NA	0	0
NC_010488	Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequence	0 crisprs	csa3	0	2
NC_010486	Escherichia coli SMS-3-5 plasmid pSMS35_4, complete sequence	0 crisprs	NA	0	0
NC_010498	Escherichia coli SMS-3-5, complete sequence	3 crisprs	c2c9_V-U4,DinG,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL	19	8
NC_010485	Escherichia coli SMS-3-5 plasmid pSMS35_8, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

50337 : 78056

Macacine_betaherpesvirus(33.33%)

integrase,protease,transposase

attL 57397:57411|attR 72518:72532

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000082154.1\|50337_51309_+\|transposase	IS110-like element ISEc32 family transposase	Q75QL1	Wolbachia_phage	1.1e-25	32.1
WP_001513511.1\|52513_52852_-	hypothetical protein	NA	NA	NA	NA
WP_000817028.1\|53663_54635_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	8.8e-169	96.6
WP_001238646.1\|54634_55801_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.6e-228	99.7
WP_000715078.1\|56953_58456_-	hypothetical protein	NA	NA	NA	NA
57397:57411	attL	NA	NA	NA	NA
WP_000238252.1\|59055_59505_-	hypothetical protein	A0A222YWI5	Escherichia_phage	5.0e-42	67.1
WP_000190053.1\|59622_60102_+	hypothetical protein	NA	NA	NA	NA
WP_000968140.1\|61385_62243_-	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA
WP_000992806.1\|62239_63097_-	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA
WP_000983710.1\|63093_63921_-	iron/manganese ABC transporter ATP-binding protein SitB	A0A1M7XV31	Cedratvirus	3.6e-14	27.0
WP_000949004.1\|63920_64835_-	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA
WP_085947772.1\|67319_68532_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-100	57.1
WP_000361611.1\|69077_70055_+	replication initiation protein	J9Q7H0	Salmonella_phage	4.6e-101	63.9
WP_001066954.1\|70339_71080_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.2e-24	57.6
WP_014640565.1\|71200_71389_-	hypothetical protein	NA	NA	NA	NA
WP_001312822.1\|71762_72665_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
72518:72532	attR	NA	NA	NA	NA
WP_000771475.1\|72733_73843_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000280980.1\|74275_75229_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_001312823.1\|76501_76660_-\|transposase	transposase	NA	NA	NA	NA
WP_162842477.1\|76843_78056_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	2.7e-167	99.0

DBSCAN-SWA_2

84260 : 98568

Escherichia_phage(45.45%)

integrase,transposase

attL 85310:85369|attR 106441:107262

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000016493.1\|84260_85052_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	2.7e-51	90.2
85310:85369	attL	NA	NA	NA	NA
WP_001067855.1\|85372_86077_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|86857_87562_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001011939.1\|87705_88347_-	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
WP_001239317.1\|88496_88997_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|89076_89781_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000845048.1\|90228_91242_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|91397_91871_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001067855.1\|91940_92645_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001138070.1\|93015_95982_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
WP_000427619.1\|96060_97065_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|97246_97423_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_001043260.1\|97752_98568_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
106441:107262	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_010498

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CRISPR-Cas detection and classification

Crispr_ID: NC_010498_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010498_1

1516294-1516417

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010498_1

>merge|NC_010498|1|1516294-1516417|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NC_010498|1|1|1516294-1516417|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010498.1\|WP_000648420.1\|1505206_1505443_-\|murein-lipoprotein-Lpp	unknown	unknown	gnl\|CDD\|185294
NC_010498.1\|WP_000269501.1\|1523060_1523993_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NC_010498.1\|WP_001273504.1\|1509034_1511137_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NC_010498.1\|WP_001070009.1\|1512516_1513302_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NC_010498.1\|WP_000587573.1\|1513305_1514118_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NC_010498.1\|WP_001174939.1\|1518028_1519402_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NC_010498.1\|WP_000212678.1\|1515852_1516158_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NC_010498.1\|WP_000701040.1\|1525568_1526738_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_010498.1\|WP_000007283.1\|1526883_1527465_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NC_010498.1\|WP_000534264.1\|1516731_1517988_+\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|137602
NC_010498.1\|WP_001070230.1\|1508387_1509014_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NC_010498.1\|WP_001361451.1\|1511851_1512520_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|274451
NC_010498.1\|WP_000102278.1\|1525313_1525403_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NC_010498.1\|WP_012311779.1\|1511149_1511788_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NC_010498.1\|WP_001295403.1\|1505753_1507166_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NC_010498.1\|WP_000190982.1\|1523989_1525015_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NC_010498.1\|WP_000528342.1\|1507722_1507932_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NC_010498.1\|WP_000098896.1\|1520297_1521446_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NC_010498.1\|WP_000493947.1\|1519616_1520258_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NC_010498.1\|WP_001182339.1\|1521736_1522948_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924

Protein	Function_ID	Function_description	E-value
NC_010498.1\|WP_000648420.1\|1505206_1505443_-\|murein-lipoprotein-Lpp	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	2.83509e-37
NC_010498.1\|WP_000269501.1\|1523060_1523993_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NC_010498.1\|WP_001273504.1\|1509034_1511137_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NC_010498.1\|WP_001070009.1\|1512516_1513302_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	1.58239e-162
NC_010498.1\|WP_000587573.1\|1513305_1514118_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	4.87964e-174
NC_010498.1\|WP_001174939.1\|1518028_1519402_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NC_010498.1\|WP_000212678.1\|1515852_1516158_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.20156e-64
NC_010498.1\|WP_000701040.1\|1525568_1526738_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
NC_010498.1\|WP_000007283.1\|1526883_1527465_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NC_010498.1\|WP_000534264.1\|1516731_1517988_+\|AIDA-repeat-containing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NC_010498.1\|WP_001070230.1\|1508387_1509014_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NC_010498.1\|WP_001361451.1\|1511851_1512520_+\|4Fe-4S-binding-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.27457e-75
NC_010498.1\|WP_012311779.1\|1511149_1511788_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	9.25213e-120
NC_010498.1\|WP_001295403.1\|1505753_1507166_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NC_010498.1\|WP_000190982.1\|1523989_1525015_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NC_010498.1\|WP_000528342.1\|1507722_1507932_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NC_010498.1\|WP_000098896.1\|1520297_1521446_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NC_010498.1\|WP_000493947.1\|1519616_1520258_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NC_010498.1\|WP_001182339.1\|1521736_1522948_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0

>NC_010498.1|WP_000212678.1|1515852_1516158_-|monooxygenase
MATLLQLHFSFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NC_010498.1|WP_000587573.1|1513305_1514118_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERAFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NC_010498.1|WP_001070009.1|1512516_1513302_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYIGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NC_010498.1|WP_001361451.1|1511851_1512520_+|4Fe-4S-binding-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NC_010498.1|WP_012311779.1|1511149_1511788_+|YdhW-family-putative-oxidoreductase-system-protein
MNHQDELPLAEVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARTVFLSPPYSVAEEELPVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NC_010498.1|WP_001273504.1|1509034_1511137_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPGTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLAFEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAVDLAAHNLLPA
>NC_010498.1|WP_001070230.1|1508387_1509014_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NC_010498.1|WP_000528342.1|1507722_1507932_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NC_010498.1|WP_001295403.1|1505753_1507166_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NC_010498.1|WP_000648420.1|1505206_1505443_-|murein-lipoprotein-Lpp
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
>NC_010498.1|WP_000534264.1|1516731_1517988_+|AIDA-repeat-containing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTIKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NC_010498.1|WP_001174939.1|1518028_1519402_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NC_010498.1|WP_000493947.1|1519616_1520258_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NC_010498.1|WP_000098896.1|1520297_1521446_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NC_010498.1|WP_001182339.1|1521736_1522948_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLFIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NC_010498.1|WP_000269501.1|1523060_1523993_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NC_010498.1|WP_000190982.1|1523989_1525015_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NC_010498.1|WP_000102278.1|1525313_1525403_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NC_010498.1|WP_000701040.1|1525568_1526738_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NC_010498.1|WP_000007283.1|1526883_1527465_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NC_010498_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010498_2

2128408-2128499

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010498_2

>merge|NC_010498|2|2128408-2128499|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NC_010498|2|2|2128408-2128499|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010498.1\|WP_000777660.1\|2125040_2125853_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NC_010498.1\|WP_000979516.1\|2117659_2117869_-\|hypothetical-protein	unknown	unknown	unknown
NC_010498.1\|WP_001120112.1\|2138675_2139368_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NC_010498.1\|WP_001126780.1\|2124646_2125033_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NC_010498.1\|WP_001571240.1\|2121925_2122564_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NC_010498.1\|WP_000024560.1\|2133774_2134080_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NC_010498.1\|WP_012311663.1\|2137373_2138546_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NC_010498.1\|WP_000535337.1\|2131338_2132595_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NC_010498.1\|WP_024175781.1\|2123942_2124635_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NC_010498.1\|WP_000209892.1\|2134231_2134831_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NC_010498.1\|WP_001571241.1\|2117923_2121886_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NC_010498.1\|WP_001143120.1\|2129539_2129767_+\|YccJ-family-protein	unknown	unknown	gnl\|CDD\|182285
NC_010498.1\|WP_001044309.1\|2129804_2131046_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NC_010498.1\|WP_001151437.1\|2128922_2129519_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NC_010498.1\|WP_001001181.1\|2125849_2126440_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NC_010498.1\|WP_001063131.1\|2134827_2137374_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NC_010498.1\|WP_001240615.1\|2126965_2128294_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NC_010498.1\|WP_001028095.1\|2126450_2126945_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NC_010498.1\|WP_000420637.1\|2132854_2133775_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NC_010498.1\|WP_012311618.1\|2122851_2123943_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355

Protein	Function_ID	Function_description	E-value
NC_010498.1\|WP_000777660.1\|2125040_2125853_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	3.07322e-140
NC_010498.1\|WP_001120112.1\|2138675_2139368_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NC_010498.1\|WP_001126780.1\|2124646_2125033_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NC_010498.1\|WP_001571240.1\|2121925_2122564_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.03073e-152
NC_010498.1\|WP_000024560.1\|2133774_2134080_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NC_010498.1\|WP_012311663.1\|2137373_2138546_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NC_010498.1\|WP_000535337.1\|2131338_2132595_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NC_010498.1\|WP_024175781.1\|2123942_2124635_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.05349e-168
NC_010498.1\|WP_000209892.1\|2134231_2134831_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	4.78918e-84
NC_010498.1\|WP_001571241.1\|2117923_2121886_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NC_010498.1\|WP_001028095.1\|2126450_2126945_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	3.76111e-106
NC_010498.1\|WP_001044309.1\|2129804_2131046_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NC_010498.1\|WP_001151437.1\|2128922_2129519_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NC_010498.1\|WP_001001181.1\|2125849_2126440_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	2.9373e-130
NC_010498.1\|WP_001063131.1\|2134827_2137374_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NC_010498.1\|WP_001240615.1\|2126965_2128294_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NC_010498.1\|WP_001143120.1\|2129539_2129767_+\|YccJ-family-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NC_010498.1\|WP_000420637.1\|2132854_2133775_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NC_010498.1\|WP_012311618.1\|2122851_2123943_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0

>NC_010498.1|WP_001240615.1|2126965_2128294_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAIMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPGFNSQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRIDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVIHQEP
>NC_010498.1|WP_001028095.1|2126450_2126945_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NC_010498.1|WP_001001181.1|2125849_2126440_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARFVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFAGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NC_010498.1|WP_000777660.1|2125040_2125853_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINAHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSRHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAACKELL
>NC_010498.1|WP_001126780.1|2124646_2125033_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NC_010498.1|WP_024175781.1|2123942_2124635_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQTALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDAQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NC_010498.1|WP_012311618.1|2122851_2123943_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVATVPGAEGVLLTFDDFLSGIENFGERIQPLMQCRAHLPALTQEVA
>NC_010498.1|WP_001571240.1|2121925_2122564_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKITGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NC_010498.1|WP_001571241.1|2117923_2121886_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQSLPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRQVFQAVRENSEDTREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPALIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDTLHHQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NC_010498.1|WP_000979516.1|2117659_2117869_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NC_010498.1|WP_001151437.1|2128922_2129519_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NC_010498.1|WP_001143120.1|2129539_2129767_+|YccJ-family-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NC_010498.1|WP_001044309.1|2129804_2131046_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWRGLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKTNRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NC_010498.1|WP_000535337.1|2131338_2132595_-|YccE-family-protein
MGSNIHGISCTANNYLKQAWHNIKKEHEKNQTYSITLFENTLVCFMRLYKEIRRQKAEDYIPCLECESLEKEFEEMQNDNDLSLFMRTLRTNDTQIYSGVSGGITYTIQYVRDIDIVRVSLPGRASESITDFKGYYWYGFMEYIENINACDDVFSEYCLDDENISVQPKQINTPGISDLDTGIDLSGISFIQSEINKTYELKYAPVDGDGYCLLRAILVLKQHDYSWALGSHKTQKEVYEEFIKIVDKPTIEALVDAAFCDLREDVKTLFGVDLQSDNKIQGVGSHMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFKDNKKLLALDTDASDRIKAVKNFLAVLSDSICSSFIVTSNVASISLGNESFSTDEDLECGYLMNTGNHYDVYLPPELFAQAYKLNNKERNAQLDYLTRYAI
>NC_010498.1|WP_000420637.1|2132854_2133775_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSHQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLKVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFEPRKDWGKA
>NC_010498.1|WP_000024560.1|2133774_2134080_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NC_010498.1|WP_000209892.1|2134231_2134831_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELENRIAALTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMVTSGNFNEPADHLAIYLELLSHLHFSLGEGSVPARRIDSLRQKTLTALWEWLPEFAARCRQYDSFGFYAALSQLLLVLVECDHQNR
>NC_010498.1|WP_001063131.1|2134827_2137374_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSISPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NC_010498.1|WP_012311663.1|2137373_2138546_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASAVKVIKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NC_010498.1|WP_001120112.1|2138675_2139368_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Crispr_ID: NC_010498_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010498_3

2950900-2952209

TypeI-E

I-E:NA

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCAGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGC	CRT
CCGGTTTATCCCCGCTGGCGCAGGGAACAC	PILER-CR

21 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_010498_3

>merge|NC_010498|3|2950900-2952209|CRISPRCasFinder,CRT,PILER-CR
CGGTTTATCCCCGCTGGCGCAGGGAACACGCGGTTATCCGTTACTTCCAATTCATCACTCCCGGTTTATCCCCGCTGGCGCGGGGAACACATACAGAGGAAGTTAAGGAACTTAAGGCGCAACGGTTTATCCCCGCTGGCGCGGGGAACACTGTTGCGTACTCTGGTCCGGTCGCTAAAACCCCGGTTTATCCCCGCTGGCGCGGGGAACACGCGGAATGGTTGAGGAGCAGCCAGTTACCCTGCGGTTTATCCCCGCTGGCGCAGGGAACACGTACCGGTGCTGGCTGGTAGCGAATACACAGAGGGTTTATCCCCGCTGGCGCAGGGAACACTCGTGAGCGCGAGAACGCGCGAACGTTTACTGCGGTTTATCCCCGCTGGCGCAGGGAACACAGCATTAATCCCCACCAGCTCGACGTGTGCGGCGGTTTATCCCCGCTGGCGCAGGGAACACGGCCAGTTGATAGCCTCGCCGGATTCAGTCGTCGGTTTATCCCCGCTGGCGCAGGGAACACTTTTTTTTGTACACTCATCACACCATCAACGACGGTTTATCCCCGCTGGCGCAGGGAACACCATTTGAGCGACGTAGCGGAAAATACGATCGCCGGTTTATCCCCGCTGGCGCAGGGAACACTCCTGGAGTGACTACATTCCCGTTAATACCAACGGTTTATCCCCGCTGGCGCAGGGAACACCGCACCAACAAACGCACTACACCACGGAGTTTCGGTTTATCCCCGCTGGCGCAGGGAACACTCATACTGCTCCCACACCGAAAGCGCGGCAGCCGGTTTATCCCCGCTGGCGCAGGGAACACCGGAGGAAGTACCACGCCTGACCAGCGTTGACCGGTTTATCCCCGCTGGCGCAGGGAACACGCGTGTCGGCAAATCCCGAGGAAATAGAACCCCGGTTTATCCCCGCTGGCGCAGGGAACACCCTTTCAGCATGGCCACAGCTTCGCTCCCTGGCGGTTTATCCCCGCTGGCGCAGGGAACACTTTACGTCTATTTTTGCGTAAGGTGCGCCAGCCGGTTTATCCCCGCTGGCGCAGGGAACACTTCACCATCAACGCCCGTTTCGAAATTAATTTCGGTTTATCCCCGCTGGCGCAGGGAACACGCTGAACTGGAACCCGCTTTACCGCTTCTTCCCGGTTTATCCCCGCTGGCGCAGGGAACACGACGTTTCTGTCGCGGGCGTTGTCACGTTCACCGGTTTATCCCCGCTGGCGCAGGGAACACAGCAAGGCAGTATGAAATGCCCTTATGGTCACCGGTTTATCCCCGCTGGCGCAGGGAACAC

>NC_010498|3|3|2950900-2952209|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCAGGGAACAC	GCGGTTATCCGTTACTTCCAATTCATCACTCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATACAGAGGAAGTTAAGGAACTTAAGGCGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTTGCGTACTCTGGTCCGGTCGCTAAAACCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGGAATGGTTGAGGAGCAGCCAGTTACCCTG
CGGTTTATCCCCGCTGGCGCAGGGAACAC	GTACCGGTGCTGGCTGGTAGCGAATACACAGA
GGGTTTATCCCCGCTGGCGCAGGGAACAC	TCGTGAGCGCGAGAACGCGCGAACGTTTACTG
CGGTTTATCCCCGCTGGCGCAGGGAACAC	AGCATTAATCCCCACCAGCTCGACGTGTGCGG
CGGTTTATCCCCGCTGGCGCAGGGAACAC	GGCCAGTTGATAGCCTCGCCGGATTCAGTCGT
CGGTTTATCCCCGCTGGCGCAGGGAACAC	TTTTTTTTGTACACTCATCACACCATCAACGA
CGGTTTATCCCCGCTGGCGCAGGGAACAC	CATTTGAGCGACGTAGCGGAAAATACGATCGC
CGGTTTATCCCCGCTGGCGCAGGGAACAC	TCCTGGAGTGACTACATTCCCGTTAATACCAA
CGGTTTATCCCCGCTGGCGCAGGGAACAC	CGCACCAACAAACGCACTACACCACGGAGTTT
CGGTTTATCCCCGCTGGCGCAGGGAACAC	TCATACTGCTCCCACACCGAAAGCGCGGCAGC
CGGTTTATCCCCGCTGGCGCAGGGAACAC	CGGAGGAAGTACCACGCCTGACCAGCGTTGAC
CGGTTTATCCCCGCTGGCGCAGGGAACAC	GCGTGTCGGCAAATCCCGAGGAAATAGAACCC
CGGTTTATCCCCGCTGGCGCAGGGAACAC	CCTTTCAGCATGGCCACAGCTTCGCTCCCTGG
CGGTTTATCCCCGCTGGCGCAGGGAACAC	TTTACGTCTATTTTTGCGTAAGGTGCGCCAGC
CGGTTTATCCCCGCTGGCGCAGGGAACAC	TTCACCATCAACGCCCGTTTCGAAATTAATTT
CGGTTTATCCCCGCTGGCGCAGGGAACAC	GCTGAACTGGAACCCGCTTTACCGCTTCTTCC
CGGTTTATCCCCGCTGGCGCAGGGAACAC	GACGTTTCTGTCGCGGGCGTTGTCACGTTCAC
CGGTTTATCCCCGCTGGCGCAGGGAACAC	AGCAAGGCAGTATGAAATGCCCTTATGGTCAC
CGGTTTATCCCCGCTGGCGCAGGGAACAC

>NC_010498|3|1|2950900-2952200|CRT
CGGTTTATCCCCGCTGGCGC	AGGGAACACGCGGTTATCCGTTACTTCCAATTCATCACTCC
CGGTTTATCCCCGCTGGCGC	GGGGAACACATACAGAGGAAGTTAAGGAACTTAAGGCGCAA
CGGTTTATCCCCGCTGGCGC	GGGGAACACTGTTGCGTACTCTGGTCCGGTCGCTAAAACCC
CGGTTTATCCCCGCTGGCGC	GGGGAACACGCGGAATGGTTGAGGAGCAGCCAGTTACCCTG
CGGTTTATCCCCGCTGGCGC	AGGGAACACGTACCGGTGCTGGCTGGTAGCGAATACACAGA
GGGTTTATCCCCGCTGGCGC	AGGGAACACTCGTGAGCGCGAGAACGCGCGAACGTTTACTG
CGGTTTATCCCCGCTGGCGC	AGGGAACACAGCATTAATCCCCACCAGCTCGACGTGTGCGG
CGGTTTATCCCCGCTGGCGC	AGGGAACACGGCCAGTTGATAGCCTCGCCGGATTCAGTCGT
CGGTTTATCCCCGCTGGCGC	AGGGAACACTTTTTTTTGTACACTCATCACACCATCAACGA
CGGTTTATCCCCGCTGGCGC	AGGGAACACCATTTGAGCGACGTAGCGGAAAATACGATCGC
CGGTTTATCCCCGCTGGCGC	AGGGAACACTCCTGGAGTGACTACATTCCCGTTAATACCAA
CGGTTTATCCCCGCTGGCGC	AGGGAACACCGCACCAACAAACGCACTACACCACGGAGTTT
CGGTTTATCCCCGCTGGCGC	AGGGAACACTCATACTGCTCCCACACCGAAAGCGCGGCAGC
CGGTTTATCCCCGCTGGCGC	AGGGAACACCGGAGGAAGTACCACGCCTGACCAGCGTTGAC
CGGTTTATCCCCGCTGGCGC	AGGGAACACGCGTGTCGGCAAATCCCGAGGAAATAGAACCC
CGGTTTATCCCCGCTGGCGC	AGGGAACACCCTTTCAGCATGGCCACAGCTTCGCTCCCTGG
CGGTTTATCCCCGCTGGCGC	AGGGAACACTTTACGTCTATTTTTGCGTAAGGTGCGCCAGC
CGGTTTATCCCCGCTGGCGC	AGGGAACACTTCACCATCAACGCCCGTTTCGAAATTAATTT
CGGTTTATCCCCGCTGGCGC	AGGGAACACGCTGAACTGGAACCCGCTTTACCGCTTCTTCC
CGGTTTATCCCCGCTGGCGC	AGGGAACACGACGTTTCTGTCGCGGGCGTTGTCACGTTCAC
CGGTTTATCCCCGCTGGCGC	AGGGAACACAGCAAGGCAGTATGAAATGCCCTTATGGTCAC
CGGTTTATCCCCGCTGGCGC

>NC_010498|3|1|2951936-2952209|PILER-CR
CCGGTTTATCCCCGCTGGCGCAGGGAACAC	TTCACCATCAACGCCCGTTTCGAAATTAATT
TCGGTTTATCCCCGCTGGCGCAGGGAACAC	GCTGAACTGGAACCCGCTTTACCGCTTCTTC
CCGGTTTATCCCCGCTGGCGCAGGGAACAC	GACGTTTCTGTCGCGGGCGTTGTCACGTTCA
CCGGTTTATCCCCGCTGGCGCAGGGAACAC	AGCAAGGCAGTATGAAATGCCCTTATGGTCA
CCGGTTTATCCCCGCTGGCGCAGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010498.1\|WP_000206454.1\|2954904_2955960_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NC_010498.1\|WP_000956460.1\|2961061_2961214_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NC_010498.1\|WP_001246104.1\|2946211_2946535_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_010498.1\|WP_000568936.1\|2943452_2944502_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_010498.1\|WP_001233967.1\|2958167_2960867_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_010498.1\|WP_001090361.1\|2947189_2948617_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_010498.1\|WP_001173673.1\|2946584_2947190_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_010498.1\|WP_000490422.1\|2949778_2950816_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_010498.1\|WP_000063171.1\|2952305_2952599_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_010498.1\|WP_000281457.1\|2953515_2954166_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NC_010498.1\|WP_000085041.1\|2954147_2954894_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_010498.1\|WP_001219237.1\|2944498_2944978_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_010498.1\|WP_000039841.1\|2961478_2962213_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_010498.1\|WP_000517476.1\|2945706_2946018_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_010498.1\|WP_000372108.1\|2948618_2949527_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_010498.1\|WP_001295182.1\|2942710_2943472_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_010498.1\|WP_000246153.1\|2944977_2945688_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_010498.1\|WP_012311912.1\|2956507_2958070_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_010498.1\|WP_000144879.1\|2952595_2953519_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_010498.1\|WP_000029333.1\|2955974_2956511_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862

Protein	Function_ID	Function_description	E-value
NC_010498.1\|WP_000206454.1\|2954904_2955960_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	6.93299e-153
NC_010498.1\|WP_000956460.1\|2961061_2961214_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	4.96653e-13
NC_010498.1\|WP_001246104.1\|2946211_2946535_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NC_010498.1\|WP_000568936.1\|2943452_2944502_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_010498.1\|WP_001233967.1\|2958167_2960867_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.17793e-179
NC_010498.1\|WP_001090361.1\|2947189_2948617_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_010498.1\|WP_001173673.1\|2946584_2947190_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NC_010498.1\|WP_000490422.1\|2949778_2950816_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_010498.1\|WP_000063171.1\|2952305_2952599_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.83858e-65
NC_010498.1\|WP_000281457.1\|2953515_2954166_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.1742e-89
NC_010498.1\|WP_000085041.1\|2954147_2954894_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.07757e-46
NC_010498.1\|WP_001219237.1\|2944498_2944978_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	5.30213e-104
NC_010498.1\|WP_000039841.1\|2961478_2962213_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.50395e-137
NC_010498.1\|WP_000517476.1\|2945706_2946018_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NC_010498.1\|WP_000372108.1\|2948618_2949527_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_010498.1\|WP_001295182.1\|2942710_2943472_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NC_010498.1\|WP_000246153.1\|2944977_2945688_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.85161e-121
NC_010498.1\|WP_012311912.1\|2956507_2958070_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_010498.1\|WP_000144879.1\|2952595_2953519_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.17023e-156
NC_010498.1\|WP_000029333.1\|2955974_2956511_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.04653e-28

>NC_010498.1|WP_000490422.1|2949778_2950816_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDSEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NC_010498.1|WP_000372108.1|2948618_2949527_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NC_010498.1|WP_001090361.1|2947189_2948617_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NC_010498.1|WP_001173673.1|2946584_2947190_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NC_010498.1|WP_001246104.1|2946211_2946535_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NC_010498.1|WP_000517476.1|2945706_2946018_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NC_010498.1|WP_000246153.1|2944977_2945688_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVTRVVIAISPGDSRFAKLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NC_010498.1|WP_001219237.1|2944498_2944978_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYALGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NC_010498.1|WP_000568936.1|2943452_2944502_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEEVAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NC_010498.1|WP_001295182.1|2942710_2943472_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NC_010498.1|WP_000063171.1|2952305_2952599_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NC_010498.1|WP_000144879.1|2952595_2953519_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQVDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDLVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPELLGDSGHRGRSG
>NC_010498.1|WP_000281457.1|2953515_2954166_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFAPELHTGQSLCFNLRANPTVCKAGKRHDLLMEAKRQVRGQAEGRNVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLCLGYGKSRAFGCGLMLIKPGAEA
>NC_010498.1|WP_000085041.1|2954147_2954894_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAGVGIRRDDTECLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQEGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDALRNAYQQYQDRFHELKVSLPKLQDECWWEGEHDGLVSSKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NC_010498.1|WP_000206454.1|2954904_2955960_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATIMIEKGIEEKKAIEWAADIADYLGKAKKDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEDDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAAFKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NC_010498.1|WP_000029333.1|2955974_2956511_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIESQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTRLSAIKTPDDLLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NC_010498.1|WP_012311912.1|2956507_2958070_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSSSFMQDFEALTGDKVPVASLLPEIPGSQTTKFNKDHFIKRGVTEYLCPHCLALALFSLQLNAPAGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWLNVMPQDEADLPLPKKFDDLIFPWLGPTRTSELVGAVVTHDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICDEQNDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEMWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NC_010498.1|WP_001233967.1|2958167_2960867_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKSNCFGLADYFRQLGFADTEQAAQFFAWLLCWHDIGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLKRVMEMWMPMTTGHHGRPPERMDELDNFLPEDKGAARDFLLAIKVLFPLIEIPTFWDDDEGVELIKQLSWYISATVVLADWTGSSTRYFPRVAQTMDIEDYWQKTLVQAQNALTVFPPKAESAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGIEGQQEAPFLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIASAVSQGKCIAWIRNSVDDAIQVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDCSQRAGKVLICTQVLEQSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDMNGQLKRDGKDERHPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCVEQRHDPEMANVILVTDDESCGYSATEGLIGKVG
>NC_010498.1|WP_000956460.1|2961061_2961214_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NC_010498.1|WP_000039841.1|2961478_2962213_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010498_2	2.1\|2128434\|40\|NC_010498\|CRISPRCasFinder	2128434-2128473	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NC_010498_1	1.1\|1516337\|38\|NC_010498\|CRISPRCasFinder	1516337-1516374	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NC_010498_3	3.44\|2952027\|31\|NC_010498\|PILER-CR	2952027-2952057	31	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	1147088-1147118	5	0.839
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP019190	Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 plasmid pATCCBAA1673_01, complete sequence	127024-127055	6	0.812
NC_010498_3	3.19\|2952027\|32\|NC_010498\|CRISPRCasFinder	2952027-2952058	32	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	1147087-1147118	6	0.812
NC_010498_3	3.2\|2950990\|32\|NC_010498\|CRISPRCasFinder	2950990-2951021	32	NZ_CP024975	Escherichia coli strain CV839-15 plasmid pCV839-15-p1, complete sequence	66116-66147	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP030198	Salmonella enterica strain SA20051401 plasmid pSA20051401.2, complete sequence	4936-4967	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP030198	Salmonella enterica strain SA20051401 plasmid pSA20051401.2, complete sequence	128920-128951	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP022035	Salmonella enterica subsp. enterica serovar Onderstepoort str. SA20060086 plasmid punamed2, complete sequence	87665-87696	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP025255	Salmonella enterica subsp. enterica serovar Newport str. CDC 2010K-2159 plasmid pSNE1-2010K-2159, complete sequence	50764-50795	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NC_019342	Salmonella sp. 14 plasmid p14-120, complete sequence	91854-91885	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NC_021871	Salmonella bongori N268-08 plasmid RM1, complete sequence	59417-59448	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP030197	Salmonella enterica strain SA20051401 plasmid pSA20051401.1, complete sequence	74730-74761	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP053580	Salmonella enterica strain 94-0093 plasmid unnamed, complete sequence	113674-113705	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP022137	Salmonella enterica subsp. diarizonae serovar 65:c:z str. SA20044251 plasmid unnamed2, complete sequence	1091-1122	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP022118	Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence	88540-88571	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NC_019125	Salmonella enterica subsp. salamae plasmid pSGSC3045-121, complete sequence	51741-51772	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NC_019125	Salmonella enterica subsp. salamae plasmid pSGSC3045-121, complete sequence	57651-57682	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	171714-171745	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	170875-170906	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP023469	Salmonella enterica subsp. enterica strain BAA-1586 plasmid pSalMiami, complete sequence	43010-43041	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	170888-170919	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	170885-170916	7	0.781
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP045959	Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence	196996-197027	7	0.781
NC_010498_3	3.19\|2952027\|32\|NC_010498\|CRISPRCasFinder	2952027-2952058	32	NZ_CP009882	Pantoea sp. PSNIH1 plasmid pPSP-26e, complete sequence	40690-40721	7	0.781
NC_010498_3	3.19\|2952027\|32\|NC_010498\|CRISPRCasFinder	2952027-2952058	32	NZ_CP051294	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence	300772-300803	7	0.781
NC_010498_3	3.19\|2952027\|32\|NC_010498\|CRISPRCasFinder	2952027-2952058	32	NZ_CP033363	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence	300759-300790	7	0.781
NC_010498_3	3.44\|2952027\|31\|NC_010498\|PILER-CR	2952027-2952057	31	NZ_CP051294	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence	300773-300803	7	0.774
NC_010498_3	3.44\|2952027\|31\|NC_010498\|PILER-CR	2952027-2952057	31	NZ_CP033363	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence	300760-300790	7	0.774
NC_010498_3	3.45\|2952088\|31\|NC_010498\|PILER-CR	2952088-2952118	31	NC_022995	Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence	549628-549658	7	0.774
NC_010498_3	3.5\|2951173\|32\|NC_010498\|CRISPRCasFinder	2951173-2951204	32	NC_015170	Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence	58292-58323	8	0.75
NC_010498_3	3.9\|2951417\|32\|NC_010498\|CRISPRCasFinder	2951417-2951448	32	MH133207	Acinetobacter phage vB_AbaM_B9, complete genome	87648-87679	8	0.75
NC_010498_3	3.13\|2951661\|32\|NC_010498\|CRISPRCasFinder	2951661-2951692	32	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	220383-220414	8	0.75
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	1551934-1551965	8	0.75
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP044528	Klebsiella grimontii strain SS141 plasmid plamid_1, complete sequence	28753-28784	8	0.75
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP008789	Klebsiella oxytoca KONIH1 plasmid pKOX-137, complete sequence	128146-128177	8	0.75
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	LC549807	Klebsiella pneumoniae VNCKp115 plasmid pVNCKp115 DNA, complete sequence	66428-66459	8	0.75
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP026274	Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence	71946-71977	8	0.75
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP029143	Klebsiella michiganensis strain AR375 plasmid unnamed3, complete sequence	109947-109978	8	0.75
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP011634	Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-228, complete sequence	138644-138675	8	0.75
NC_010498_3	3.20\|2952088\|32\|NC_010498\|CRISPRCasFinder	2952088-2952119	32	NC_022995	Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence	549628-549659	8	0.75
NC_010498_3	3.2\|2950990\|32\|NC_010498\|CRISPRCasFinder	2950990-2951021	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1856586-1856617	9	0.719
NC_010498_3	3.2\|2950990\|32\|NC_010498\|CRISPRCasFinder	2950990-2951021	32	MN234187	Mycobacterium phage DyoEdafos, complete genome	33938-33969	9	0.719
NC_010498_3	3.2\|2950990\|32\|NC_010498\|CRISPRCasFinder	2950990-2951021	32	MG603697	Vibrio phage Vp_R1, complete genome	41873-41904	9	0.719
NC_010498_3	3.3\|2951051\|32\|NC_010498\|CRISPRCasFinder	2951051-2951082	32	NC_020865	Cyanophage KBS-P-1A genomic sequence	41617-41648	9	0.719
NC_010498_3	3.3\|2951051\|32\|NC_010498\|CRISPRCasFinder	2951051-2951082	32	HQ317389	Synechococcus phage S-RIP2 genomic sequence	22039-22070	9	0.719
NC_010498_3	3.3\|2951051\|32\|NC_010498\|CRISPRCasFinder	2951051-2951082	32	KC011005	Synechococcus phage S-RIP2 isolate N_01_1007 photosystem II D1 protein (psbA) gene, complete cds	429-460	9	0.719
NC_010498_3	3.6\|2951234\|32\|NC_010498\|CRISPRCasFinder	2951234-2951265	32	NZ_CP032314	Pannonibacter phragmitetus BB plasmid p.BB_2, complete sequence	58546-58577	9	0.719
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP041047	Citrobacter sp. CF971 plasmid pBM527-1, complete sequence	6870-6901	9	0.719
NC_010498_3	3.16\|2951844\|32\|NC_010498\|CRISPRCasFinder	2951844-2951875	32	NZ_CP033743	Citrobacter freundii strain FDAARGOS_549 plasmid unnamed, complete sequence	70911-70942	9	0.719
NC_010498_3	3.19\|2952027\|32\|NC_010498\|CRISPRCasFinder	2952027-2952058	32	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	126951-126982	9	0.719
NC_010498_3	3.43\|2951966\|31\|NC_010498\|PILER-CR	2951966-2951996	31	MN937349	Stenotrophomonas phage vB_SmaS_BUCT548, complete genome	13859-13889	9	0.71
NC_010498_3	3.46\|2952149\|31\|NC_010498\|PILER-CR	2952149-2952179	31	MN693415	Marine virus AFVG_25M102, complete genome	5687-5717	9	0.71
NC_010498_3	3.11\|2951539\|32\|NC_010498\|CRISPRCasFinder	2951539-2951570	32	NZ_CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	298322-298353	10	0.688
NC_010498_3	3.18\|2951966\|32\|NC_010498\|CRISPRCasFinder	2951966-2951997	32	MN937349	Stenotrophomonas phage vB_SmaS_BUCT548, complete genome	13858-13889	10	0.688
NC_010498_3	3.21\|2952149\|32\|NC_010498\|CRISPRCasFinder	2952149-2952180	32	MN693415	Marine virus AFVG_25M102, complete genome	5687-5718	10	0.688
NC_010498_3	3.4\|2951112\|32\|NC_010498\|CRISPRCasFinder	2951112-2951143	32	NZ_LN831184	Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence	302156-302187	11	0.656

1. spacer 2.1|2128434|40|NC_010498|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 1.1|1516337|38|NC_010498|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 3.44|2952027|31|NC_010498|PILER-CR matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.839

--gctgaactggaacccgctttaccgcttcttc	CRISPR spacer
ccgctg--ccggaacccgctttaccgcgccttc	Protospacer
  ****  *.***************** .****

4. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP019190 (Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 plasmid pATCCBAA1673_01, complete sequence) position: , mismatch: 6, identity: 0.812

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatggccaccgcatcggcctccgg	Protospacer
***************** ** *** .*.*.**

5. spacer 3.19|2952027|32|NC_010498|CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

--gctgaactggaacccgctttaccgcttcttcc	CRISPR spacer
ccgctg--ccggaacccgctttaccgcgccttca	Protospacer
  ****  *.***************** .****

6. spacer 3.2|2950990|32|NC_010498|CRISPRCasFinder matches to NZ_CP024975 (Escherichia coli strain CV839-15 plasmid pCV839-15-p1, complete sequence) position: , mismatch: 7, identity: 0.781

atacagaggaagttaaggaacttaaggcgcaa	CRISPR spacer
acgccggagaggttaaggagcttaaggcgcaa	Protospacer
*..* *..**.********.************

7. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP030198 (Salmonella enterica strain SA20051401 plasmid pSA20051401.2, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

8. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP030198 (Salmonella enterica strain SA20051401 plasmid pSA20051401.2, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

9. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP022035 (Salmonella enterica subsp. enterica serovar Onderstepoort str. SA20060086 plasmid punamed2, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

10. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP025255 (Salmonella enterica subsp. enterica serovar Newport str. CDC 2010K-2159 plasmid pSNE1-2010K-2159, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttgagcatggccacagcatcagcacccgg	Protospacer
***** ************** **. . **.**

11. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NC_019342 (Salmonella sp. 14 plasmid p14-120, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

12. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NC_021871 (Salmonella bongori N268-08 plasmid RM1, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

13. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP030197 (Salmonella enterica strain SA20051401 plasmid pSA20051401.1, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

14. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP053580 (Salmonella enterica strain 94-0093 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

15. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP022137 (Salmonella enterica subsp. diarizonae serovar 65:c:z str. SA20044251 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

16. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP022118 (Salmonella enterica subsp. enterica serovar Macclesfield str. S-1643 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

17. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NC_019125 (Salmonella enterica subsp. salamae plasmid pSGSC3045-121, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatggccactgcatctgcacccgg	Protospacer
***************** ** **  . **.**

18. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NC_019125 (Salmonella enterica subsp. salamae plasmid pSGSC3045-121, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

19. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

20. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

21. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP023469 (Salmonella enterica subsp. enterica strain BAA-1586 plasmid pSalMiami, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

22. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

23. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatagccacagcatcagcacccgg	Protospacer
***********.******** **. . **.**

24. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP045959 (Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence) position: , mismatch: 7, identity: 0.781

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatggccaccgcctcattttccgg	Protospacer
***************** **.**..*..*.**

25. spacer 3.19|2952027|32|NC_010498|CRISPRCasFinder matches to NZ_CP009882 (Pantoea sp. PSNIH1 plasmid pPSP-26e, complete sequence) position: , mismatch: 7, identity: 0.781

--gctgaactggaacccgctttaccgcttcttcc	CRISPR spacer
cagccg--cctgaacccgctttaccggatcttcc	Protospacer
  **.*  *. ***************  ******

26. spacer 3.19|2952027|32|NC_010498|CRISPRCasFinder matches to NZ_CP051294 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence) position: , mismatch: 7, identity: 0.781

gctgaactggaacccgctttaccgcttcttcc	CRISPR spacer
gccagactggaacccgctcgaccgcttcggcc	Protospacer
**...*************. ********  **

27. spacer 3.19|2952027|32|NC_010498|CRISPRCasFinder matches to NZ_CP033363 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence) position: , mismatch: 7, identity: 0.781

gctgaactggaacccgctttaccgcttcttcc	CRISPR spacer
gccagactggaacccgctcgaccgcttcggcc	Protospacer
**...*************. ********  **

28. spacer 3.44|2952027|31|NC_010498|PILER-CR matches to NZ_CP051294 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence) position: , mismatch: 7, identity: 0.774

gctgaactggaacccgctttaccgcttcttc	CRISPR spacer
gccagactggaacccgctcgaccgcttcggc	Protospacer
**...*************. ********  *

29. spacer 3.44|2952027|31|NC_010498|PILER-CR matches to NZ_CP033363 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence) position: , mismatch: 7, identity: 0.774

gctgaactggaacccgctttaccgcttcttc	CRISPR spacer
gccagactggaacccgctcgaccgcttcggc	Protospacer
**...*************. ********  *

30. spacer 3.45|2952088|31|NC_010498|PILER-CR matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 7, identity: 0.774

gacgtttctgtcgcgggcgttgtcacgttca	CRISPR spacer
gacgtttctgtcgcggcccttgtctttttag	Protospacer
**************** * ***** . ** .

31. spacer 3.5|2951173|32|NC_010498|CRISPRCasFinder matches to NC_015170 (Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequence) position: , mismatch: 8, identity: 0.75

gtaccggtgctggctggtagcgaatacacaga	CRISPR spacer
gcttcggcgctggctggtagcgaatgcaaggc	Protospacer
*. .***.*****************.** .*

32. spacer 3.9|2951417|32|NC_010498|CRISPRCasFinder matches to MH133207 (Acinetobacter phage vB_AbaM_B9, complete genome) position: , mismatch: 8, identity: 0.75

ttttttttgtacactcatcacaccatcaacga	CRISPR spacer
attttcttgtacactaatcacaccaagctcaa	Protospacer
 ****.********* *********    *.*

33. spacer 3.13|2951661|32|NC_010498|CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcatactgctcccacaccgaaagcgcggcagc	CRISPR spacer
acccgctgctcccacaccgaatgctcggcgac	Protospacer
 * ..**************** ** ****..*

34. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 8, identity: 0.75

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cttggataaatcgccacagcttcgctccctgg	Protospacer
*.*    . ** ********************

35. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP044528 (Klebsiella grimontii strain SS141 plasmid plamid_1, complete sequence) position: , mismatch: 8, identity: 0.75

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatggccaccgcatccgcttcggg	Protospacer
***************** ** **  ...* **

36. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP008789 (Klebsiella oxytoca KONIH1 plasmid pKOX-137, complete sequence) position: , mismatch: 8, identity: 0.75

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatggccaccgcatccgcttcggg	Protospacer
***************** ** **  ...* **

37. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to LC549807 (Klebsiella pneumoniae VNCKp115 plasmid pVNCKp115 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatggccaccgcatccgcttcggg	Protospacer
***************** ** **  ...* **

38. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP026274 (Klebsiella oxytoca strain KONIH4 plasmid pKPC-4b66, complete sequence) position: , mismatch: 8, identity: 0.75

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatggccaccgcatccgcttcggg	Protospacer
***************** ** **  ...* **

39. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP029143 (Klebsiella michiganensis strain AR375 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatggccaccgcatccgcttcggg	Protospacer
***************** ** **  ...* **

40. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP011634 (Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-228, complete sequence) position: , mismatch: 8, identity: 0.75

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatggccaccgcatccgcttcggg	Protospacer
***************** ** **  ...* **

41. spacer 3.20|2952088|32|NC_010498|CRISPRCasFinder matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

gacgtttctgtcgcgggcgttgtcacgttcac	CRISPR spacer
gacgtttctgtcgcggcccttgtctttttagg	Protospacer
**************** * ***** . ** .

42. spacer 3.2|2950990|32|NC_010498|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 9, identity: 0.719

atacagaggaagttaaggaacttaaggcgcaa	CRISPR spacer
ccgtcgaggaagcgaaggaacttaaggcgctc	Protospacer
 ... *******. ****************

43. spacer 3.2|2950990|32|NC_010498|CRISPRCasFinder matches to MN234187 (Mycobacterium phage DyoEdafos, complete genome) position: , mismatch: 9, identity: 0.719

atacagaggaagttaaggaacttaaggcgcaa	CRISPR spacer
acgctgaggcagttaacgaacttaaggccgcg	Protospacer
*..* **** ****** ***********   .

44. spacer 3.2|2950990|32|NC_010498|CRISPRCasFinder matches to MG603697 (Vibrio phage Vp_R1, complete genome) position: , mismatch: 9, identity: 0.719

atacagaggaagttaaggaactta----aggcgcaa	CRISPR spacer
ttacagaggaagctaaggaaattatccgaaac----	Protospacer
 ***********.******* ***    *..*

45. spacer 3.3|2951051|32|NC_010498|CRISPRCasFinder matches to NC_020865 (Cyanophage KBS-P-1A genomic sequence) position: , mismatch: 9, identity: 0.719

tgttgcgtactctggtccggtcgctaaaaccc	CRISPR spacer
tgttgcgtactctgctcctgtcgccgctgcga	Protospacer
************** *** *****..  .*

46. spacer 3.3|2951051|32|NC_010498|CRISPRCasFinder matches to HQ317389 (Synechococcus phage S-RIP2 genomic sequence) position: , mismatch: 9, identity: 0.719

tgttgcgtactctggtccggtcgctaaaaccc	CRISPR spacer
tgttgcgtactctgctcctgtcgccgctgcga	Protospacer
************** *** *****..  .*

47. spacer 3.3|2951051|32|NC_010498|CRISPRCasFinder matches to KC011005 (Synechococcus phage S-RIP2 isolate N_01_1007 photosystem II D1 protein (psbA) gene, complete cds) position: , mismatch: 9, identity: 0.719

tgttgcgtactctggtccggtcgctaaaaccc	CRISPR spacer
tgttgcgtactctgctcctgtcgccgctgcga	Protospacer
************** *** *****..  .*

48. spacer 3.6|2951234|32|NC_010498|CRISPRCasFinder matches to NZ_CP032314 (Pannonibacter phragmitetus BB plasmid p.BB_2, complete sequence) position: , mismatch: 9, identity: 0.719

tcgtgagcgcgagaacgcgcgaacgtttactg	CRISPR spacer
tcgtgcgcgcgagaacgagcgaatagagcccg	Protospacer
***** *********** *****..    *.*

49. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP041047 (Citrobacter sp. CF971 plasmid pBM527-1, complete sequence) position: , mismatch: 9, identity: 0.719

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatggccaccgcctcagcgccgtc	Protospacer
***************** **.**. . **

50. spacer 3.16|2951844|32|NC_010498|CRISPRCasFinder matches to NZ_CP033743 (Citrobacter freundii strain FDAARGOS_549 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cctttcagcatggccacagcttcgctccctgg	CRISPR spacer
cctttcagcatggccaccgcatccgcttcgga	Protospacer
***************** ** **  ...* *.

51. spacer 3.19|2952027|32|NC_010498|CRISPRCasFinder matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

gctgaactggaacccgctttaccgcttcttcc	CRISPR spacer
cttctatcagaacccgcttggccgcttcttcc	Protospacer
 .*  *...********** .***********

52. spacer 3.43|2951966|31|NC_010498|PILER-CR matches to MN937349 (Stenotrophomonas phage vB_SmaS_BUCT548, complete genome) position: , mismatch: 9, identity: 0.71

ttcaccatcaacgcccgtttcgaaattaatt	CRISPR spacer
ctcaccatcaacgccctgttcgaacgaaccc	Protospacer
.***************  ******   * ..

53. spacer 3.46|2952149|31|NC_010498|PILER-CR matches to MN693415 (Marine virus AFVG_25M102, complete genome) position: , mismatch: 9, identity: 0.71

agcaaggcagtatgaaatgcccttatggtca	CRISPR spacer
tatatcgcagaatgaaacgcccttatggtgt	Protospacer
 ..*  **** ******.***********

54. spacer 3.11|2951539|32|NC_010498|CRISPRCasFinder matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 10, identity: 0.688

tcctggagtgactacattcccgttaataccaa	CRISPR spacer
gcctggagtgactacattgacgtttctctgtg	Protospacer
 *****************  ****  * .  .

55. spacer 3.18|2951966|32|NC_010498|CRISPRCasFinder matches to MN937349 (Stenotrophomonas phage vB_SmaS_BUCT548, complete genome) position: , mismatch: 10, identity: 0.688

ttcaccatcaacgcccgtttcgaaattaattt	CRISPR spacer
ctcaccatcaacgccctgttcgaacgaaccca	Protospacer
.***************  ******   * ..

56. spacer 3.21|2952149|32|NC_010498|CRISPRCasFinder matches to MN693415 (Marine virus AFVG_25M102, complete genome) position: , mismatch: 10, identity: 0.688

agcaaggcagtatgaaatgcccttatggtcac	CRISPR spacer
tatatcgcagaatgaaacgcccttatggtgta	Protospacer
 ..*  **** ******.***********

57. spacer 3.4|2951112|32|NC_010498|CRISPRCasFinder matches to NZ_LN831184 (Vibrio cholerae isolate V. cholerae 116-14 plasmid pNDM-116-14, complete sequence) position: , mismatch: 11, identity: 0.656

gcggaatggttgaggagcagccagttaccctg	CRISPR spacer
ctggaatgattgaggcgcagccagtagatgac	Protospacer
 .******.****** ********* . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

910095 : 973330

uncultured_Caudovirales_phage(47.37%)

head,tail,integrase,protease,tRNA,terminase,capsid,transposase,portal

attL 945465:945480|attR 962275:962290

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000868863.1\|910095_911121_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_000691708.1\|911622_911706_-	protein YohP	NA	NA	NA	NA
WP_001078163.1\|911929_913366_+	multidrug resistance outer membrane protein MdtQ	NA	NA	NA	NA
WP_000079513.1\|913418_914180_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_001296821.1\|914299_914878_-	DedA family protein	NA	NA	NA	NA
WP_001295454.1\|915047_915635_+	YIP1 family protein	NA	NA	NA	NA
WP_001319943.1\|915808_916741_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_000097379.1\|916779_918495_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_000871485.1\|918690_920988_+	beta-glucosidase BglX	NA	NA	NA	NA
WP_001131262.1\|921239_922157_+	glycine betaine ABC transporter substrate-binding protein OsmF	NA	NA	NA	NA
WP_000221775.1\|922163_923321_+	glycine betaine ABC transporter permease YehY	NA	NA	NA	NA
WP_000569360.1\|923313_924240_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	30.8
WP_000783133.1\|924244_924976_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|924956_925064_-	protein YohO	NA	NA	NA	NA
WP_001240398.1\|925123_925855_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001334139.1\|926076_927762_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	9.5e-304	99.5
WP_012311742.1\|927758_928478_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_012311821.1\|928524_928995_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	8.8e-82	99.4
WP_001296231.1\|929035_929497_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_012311938.1\|929621_931622_-	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.3
WP_012311939.1\|931618_932755_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.2e-161	97.1
WP_001294440.1\|932747_935027_-	hypothetical protein	NA	NA	NA	NA
WP_012311965.1\|935037_936126_-	MoxR family ATPase	NA	NA	NA	NA
WP_000636920.1\|936701_937022_-	hypothetical protein	NA	NA	NA	NA
WP_000356771.1\|937082_940745_-	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_001215564.1\|940754_944543_-	WGR and DUF4132 domain-containing protein	NA	NA	NA	NA
WP_001295427.1\|944683_946717_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
945465:945480	attL	NA	NA	NA	NA
WP_001005448.1\|946848_947958_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001046488.1\|948220_948502_+	YehE family protein	NA	NA	NA	NA
WP_000830468.1\|948797_949340_+	fimbrial protein	NA	NA	NA	NA
WP_000945421.1\|950110_952591_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000405736.1\|952606_953641_+	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_000153067.1\|953722_954061_-	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_000134614.1\|954279_955104_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000019944.1\|955224_955497_+	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000513574.1\|955826_957047_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	2.4e-131	55.6
WP_000163378.1\|957043_957898_+	hypothetical protein	NA	NA	NA	NA
WP_001075377.1\|958001_958226_+	AlpA family phage regulatory protein	A0A2H4JB58	uncultured_Caudovirales_phage	3.6e-17	64.2
WP_001113141.1\|959270_959591_+	hypothetical protein	NA	NA	NA	NA
WP_001261505.1\|959597_959897_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000710160.1\|959893_961711_+	DNA primase	Q7M2A8	Enterobacteria_phage	2.6e-129	50.7
WP_000125507.1\|961998_962244_+	hypothetical protein	NA	NA	NA	NA
WP_000126652.1\|962240_962666_+	single-stranded DNA-binding protein	NA	NA	NA	NA
962275:962290	attR	NA	NA	NA	NA
WP_024167808.1\|962682_962931_+	hypothetical protein	NA	NA	NA	NA
WP_001053662.1\|962966_963473_-	hypothetical protein	NA	NA	NA	NA
WP_000733253.1\|963759_964929_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.8e-163	76.3
WP_000798773.1\|964983_965544_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	2.6e-88	84.9
WP_000270251.1\|965545_966760_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	2.2e-209	87.3
WP_001287546.1\|966752_967055_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	1.4e-27	61.1
WP_001145897.1\|967054_967495_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	9.1e-65	76.0
WP_001251188.1\|967478_967664_+	hypothetical protein	NA	NA	NA	NA
WP_001353110.1\|967783_968140_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	6.1e-51	83.8
WP_000127869.1\|968123_969785_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	4.9e-276	82.3
WP_001353111.1\|969790_970072_+	hypothetical protein	NA	NA	NA	NA
WP_001195575.1\|970861_971650_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000822274.1\|971646_972447_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_012311759.1\|972511_973330_+	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	1.1e-23	38.5

DBSCAN-SWA_2

1173550 : 1215190

Escherichia_phage(52.08%)

head,tail,integrase,protease,holin,terminase,capsid,transposase,portal

attL 1166612:1166627|attR 1195874:1195889

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1166612:1166627	attL	NA	NA	NA	NA
WP_000533615.1\|1173550_1174576_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	3.4e-102	57.9
WP_000096344.1\|1174575_1174779_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000102142.1\|1174837_1177279_-	exonuclease	V5UQJ3	Shigella_phage	3.5e-113	47.0
WP_001070260.1\|1177372_1177564_-	DUF1482 family protein	NA	NA	NA	NA
WP_000854558.1\|1177560_1177749_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001171942.1\|1178316_1178535_-	hypothetical protein	NA	NA	NA	NA
WP_000379594.1\|1178694_1178850_-	DUF1391 family protein	M4QQ57	Salicola_phage	9.8e-06	48.9
WP_001003379.1\|1179039_1179447_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	7.2e-24	45.4
WP_000476986.1\|1179524_1179752_+	transcriptional regulator	NA	NA	NA	NA
WP_000705383.1\|1179735_1180287_+	hypothetical protein	NA	NA	NA	NA
WP_000020541.1\|1180258_1181299_+	DNA-binding protein	A0A0U2RT81	Escherichia_phage	1.0e-90	87.2
WP_001309414.1\|1181210_1181753_+	hypothetical protein	A0A0U2JGJ0	Escherichia_phage	3.6e-79	90.2
WP_000450714.1\|1181786_1182557_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	4.3e-86	67.6
WP_001141099.1\|1182572_1182965_+	DUF977 family protein	A0A088CBK9	Shigella_phage	1.5e-39	63.3
WP_001266130.1\|1182961_1183258_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	1.2e-47	95.8
WP_001209471.1\|1183254_1183716_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	3.8e-37	91.7
WP_000403785.1\|1183693_1184050_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.8e-58	99.2
WP_001224665.1\|1184143_1184326_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	9.1e-27	98.3
WP_000753053.1\|1184318_1184495_+	hypothetical protein	A0A2R2X2A8	Escherichia_phage	3.3e-26	93.1
WP_001289982.1\|1184491_1185007_+	hypothetical protein	A0A076GCN9	Escherichia_phage	5.0e-38	76.2
WP_000902693.1\|1185493_1185706_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	6.8e-26	92.9
WP_000687435.1\|1185926_1186187_+	hypothetical protein	NA	NA	NA	NA
WP_024210535.1\|1186253_1186532_+	hypothetical protein	I6PCV7	Cronobacter_phage	9.7e-12	48.4
WP_001265039.1\|1186533_1187589_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.2e-89	48.1
WP_000140004.1\|1187589_1187955_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.2e-39	67.5
WP_001064893.1\|1187951_1188641_+	antiterminator	I6PDF8	Cronobacter_phage	7.4e-61	51.1
WP_000839572.1\|1189436_1189652_+\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	5.3e-34	98.6
WP_000193280.1\|1189656_1190007_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.9e-37	95.2
WP_000991413.1\|1190070_1190604_+	lysozyme	Q08J98	Stx2-converting_phage	5.3e-99	93.8
WP_032193450.1\|1190820_1191006_+	membrane protein	A0A0P0ZE50	Stx2-converting_phage	1.1e-19	80.3
WP_001140099.1\|1191110_1191461_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	1.2e-64	98.3
WP_001317918.1\|1191609_1192092_+\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	5.7e-84	97.5
WP_001140891.1\|1192091_1193849_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.3
WP_000478567.1\|1193860_1194043_+	hypothetical protein	A0A1B5FP99	Escherichia_phage	1.1e-24	96.7
WP_000466247.1\|1194042_1195284_+\|portal	phage portal protein	U5P411	Shigella_phage	5.9e-242	99.5
WP_001193631.1\|1195261_1195912_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-119	100.0
1195874:1195889	attR	NA	NA	NA	NA
WP_000257489.1\|1195926_1197132_+\|capsid	phage major capsid protein	U5P0G9	Shigella_phage	1.3e-222	99.0
WP_000601355.1\|1197183_1197372_+	hypothetical protein	A0A1B5FP98	Escherichia_phage	7.2e-27	100.0
WP_000983037.1\|1197383_1197689_+\|head,tail	phage gp6-like head-tail connector protein	A0A1B5FP86	Escherichia_phage	9.2e-40	100.0
WP_001147820.1\|1197697_1198036_+\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	1.6e-56	99.1
WP_000347790.1\|1198035_1198482_+	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	2.3e-63	80.4
WP_001209399.1\|1198478_1198823_+	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	4.2e-57	100.0
WP_000097533.1\|1198882_1199587_+	hypothetical protein	A0A1B5FP82	Escherichia_phage	1.5e-117	96.2
WP_000164661.1\|1199601_1199973_+\|tail	phage tail assembly chaperone	A0A1B5FP91	Escherichia_phage	6.5e-64	100.0
WP_000978931.1\|1199996_1200275_+	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	1.6e-43	98.9
WP_000224017.1\|1200320_1203548_+\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	95.1
WP_001330090.1\|1203525_1203882_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.8e-40	66.7
WP_001152420.1\|1203881_1204580_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	9.9e-130	96.1
WP_012311596.1\|1204584_1205328_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.9e-143	93.5
WP_012311734.1\|1205225_1205873_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.8e-110	96.3
WP_000515358.1\|1205933_1209413_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.0
WP_001228253.1\|1209480_1210080_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	4.0e-103	93.0
WP_089541817.1\|1212521_1213750_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.7e-170	95.7
WP_000654145.1\|1213858_1214140_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	2.4e-18	50.0
WP_000235970.1\|1214149_1215190_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	4.1e-156	81.4

DBSCAN-SWA_3

2227126 : 2294205

Escherichia_phage(13.64%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024210537.1\|2227126_2228473_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_000445250.1\|2228598_2229882_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000057149.1\|2229952_2231041_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	3.5e-81	46.8
WP_000642852.1\|2231239_2231932_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_001361418.1\|2232061_2233822_+	30S ribosomal protein S12 methylthiotransferase accessory protein YcaO	NA	NA	NA	NA
WP_000642546.1\|2234227_2235085_+	formate transporter FocA	NA	NA	NA	NA
WP_001292812.1\|2235139_2237422_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.3e-162	41.4
WP_000111039.1\|2237613_2238354_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	8.0e-21	26.5
WP_000918513.1\|2238563_2239994_-	amino acid permease	NA	NA	NA	NA
WP_000109295.1\|2240203_2241352_-	MFS transporter	NA	NA	NA	NA
WP_000165876.1\|2241666_2242293_+	hydrolase	NA	NA	NA	NA
WP_000534644.1\|2242328_2243192_-	dimethyl sulfoxide reductase anchor subunit DmsC	NA	NA	NA	NA
WP_000213103.1\|2243193_2243811_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000850334.1\|2243821_2246266_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	8.6e-221	49.8
WP_000886683.1\|2246504_2247797_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000067755.1\|2247887_2249231_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|2249241_2249853_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000077118.1\|2250011_2254121_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|2254255_2254750_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537432.1\|2255294_2256260_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.1e-62	44.6
WP_001043594.1\|2256382_2258149_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	9.2e-23	24.3
WP_001202209.1\|2258149_2259871_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.9e-20	25.0
WP_001241678.1\|2259912_2260617_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|2260901_2261120_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_001274547.1\|2261610_2262453_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_000839253.1\|2262537_2262735_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_001054233.1\|2262751_2263240_-	hypothetical protein	NA	NA	NA	NA
WP_000854686.1\|2263236_2263620_-	toxin	NA	NA	NA	NA
WP_001360163.1\|2263696_2264077_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000086769.1\|2264087_2264771_-	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	3.1e-27	35.6
WP_000692298.1\|2264789_2265011_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.4e-10	45.8
WP_001186726.1\|2265073_2265550_-	RadC family protein	NA	NA	NA	NA
WP_000214307.1\|2265565_2266051_-	antirestriction protein	A9J566	Pseudomonas_phage	3.4e-12	31.5
WP_001234732.1\|2266142_2266961_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	1.0e-45	39.3
WP_000820472.1\|2267287_2270134_-	autotransporter adhesin Ag43	NA	NA	NA	NA
WP_001069757.1\|2270505_2271378_-	GTPase family protein	NA	NA	NA	NA
WP_000200811.1\|2271641_2273213_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.2e-104	42.7
WP_000721956.1\|2274062_2276285_-	glycosyltransferase	NA	NA	NA	NA
WP_000183578.1\|2276382_2277192_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_000019443.1\|2278305_2279298_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	3.2e-182	99.4
WP_162842843.1\|2279745_2280959_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	3.9e-166	97.6
WP_089578733.1\|2280951_2282081_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.5e-47	40.6
WP_000654812.1\|2282077_2283046_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	2.1e-186	99.7
WP_160379547.1\|2284329_2285475_-	glycosyltransferase	NA	NA	NA	NA
WP_000683047.1\|2285475_2286366_-	glycosyltransferase	NA	NA	NA	NA
WP_000828112.1\|2286362_2287517_-	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	7.7e-79	41.6
WP_001084506.1\|2287535_2289428_-	DUF4422 domain-containing protein	NA	NA	NA	NA
WP_000433876.1\|2289442_2290183_-	O-antigen export ABC transporter ATP-binding protein RfbB	A0A2K9L3Z8	Tupanvirus	3.5e-08	27.2
WP_000876712.1\|2290182_2290950_-	ABC transporter permease	NA	NA	NA	NA
WP_012311662.1\|2292407_2292560_+	hypothetical protein	NA	NA	NA	NA
WP_012311606.1\|2292585_2294205_+\|transposase	ISL3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

2554185 : 2567107

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000368131.1\|2554185_2555118_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.2e-167	100.0
WP_001361863.1\|2555705_2556224_-	hypothetical protein	A0A2L1IV11	Escherichia_phage	1.4e-83	97.7
WP_012311963.1\|2556283_2564197_-	phase-variable autotransporter adhesin UpaE	A0A2L1IV38	Escherichia_phage	0.0e+00	93.4
WP_000243052.1\|2564221_2564842_-	LuxR family transcriptional regulator	A0A2L1IV08	Escherichia_phage	1.3e-117	99.0
WP_001181154.1\|2565159_2565789_-	tyrosine-type DNA invertase IpuA	A0A2L1IV36	Escherichia_phage	5.4e-119	99.0
WP_001224626.1\|2566537_2567107_+	tyrosine-type DNA invertase IpuB	A0A2L1IV36	Escherichia_phage	7.0e-49	52.2

DBSCAN-SWA_5

3168081 : 3221243

Stx2-converting_phage(50.0%)

integrase,transposase,tRNA,protease

attL 3183982:3183999|attR 3241092:3241109

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001297457.1\|3168081_3168840_+\|protease	metalloprotease LoiP	NA	NA	NA	NA
WP_000105566.1\|3168887_3169808_-	agmatinase	NA	NA	NA	NA
WP_000758893.1\|3169943_3170675_-	hypothetical protein	NA	NA	NA	NA
WP_001295380.1\|3170820_3172797_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_001297406.1\|3172805_3172937_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_001303650.1\|3173072_3173288_+	hypothetical protein	NA	NA	NA	NA
WP_001062128.1\|3173591_3174746_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.0e-128	63.2
WP_001112301.1\|3175181_3176576_+	galactose/proton symporter	NA	NA	NA	NA
WP_001296359.1\|3176652_3177150_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286519.1\|3177244_3177952_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001376015.1\|3178031_3178763_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593273.1\|3178775_3179726_+	glutathione synthase	NA	NA	NA	NA
WP_001355636.1\|3179834_3180398_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017111.1\|3180397_3180814_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001546096.1\|3180992_3181973_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997795.1\|3181990_3182695_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094831.1\|3182712_3183279_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277222.1\|3183275_3183566_+	YggU family protein	NA	NA	NA	NA
WP_001174747.1\|3183573_3184167_+	XTP/dITP diphosphatase	NA	NA	NA	NA
3183982:3183999	attL	NA	NA	NA	NA
WP_000239978.1\|3184159_3185296_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000745201.1\|3185364_3186372_-	DUF1202 family protein	NA	NA	NA	NA
WP_000394125.1\|3186488_3187535_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984796.1\|3187710_3188430_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001107564.1\|3188613_3188940_-	YggL family protein	NA	NA	NA	NA
WP_000786911.1\|3188939_3189659_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001376017.1\|3189819_3190872_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091700.1\|3190899_3191175_+	oxidative damage protection protein	NA	NA	NA	NA
WP_001618095.1\|3191238_3192318_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001360964.1\|3192519_3193776_+	nucleoside permease NupG	NA	NA	NA	NA
WP_001376254.1\|3193822_3195958_-	ornithine decarboxylase	NA	NA	NA	NA
WP_001218742.1\|3197410_3198595_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.7e-121	53.1
WP_000053331.1\|3198744_3199755_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_000253907.1\|3199850_3201977_+	alpha-galactosidase	NA	NA	NA	NA
WP_001083368.1\|3202039_3203317_+	MFS transporter	NA	NA	NA	NA
WP_024144973.1\|3203313_3204747_+	glycoside hydrolase family 32 protein	NA	NA	NA	NA
WP_001037798.1\|3204941_3206336_+	carbohydrate porin	NA	NA	NA	NA
WP_012311683.1\|3207579_3207804_-	hypothetical protein	NA	NA	NA	NA
WP_001339397.1\|3210659_3211337_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|3211336_3211684_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000381337.1\|3211703_3213278_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.0e-167	58.2
WP_001266790.1\|3214174_3216262_-	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.3e-09	33.8
WP_001354603.1\|3218015_3219047_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_000881113.1\|3220850_3221243_+\|transposase	transposase	NA	NA	NA	NA
3241092:3241109	attR	NA	NA	NA	NA

DBSCAN-SWA_6

3231312 : 3310462

Enterobacteria_phage(23.53%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000952436.1\|3231312_3232485_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	4.0e-224	97.4
WP_000248798.1\|3232550_3232871_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	8.8e-33	70.9
WP_000502867.1\|3236888_3237533_-	ParB N-terminal domain-containing protein	A0A0F7L444	uncultured_marine_virus	1.6e-54	51.5
WP_012311602.1\|3237517_3238744_-	phosphoadenosine phosphosulfate reductase	A0A068F1U8	Mycobacterium_phage	1.1e-64	34.2
WP_024211228.1\|3244028_3244349_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012311653.1\|3245597_3245822_+	hypothetical protein	NA	NA	NA	NA
WP_000823671.1\|3245950_3246475_-	superoxide dismutase family protein	Q9MC02	Salmonella_phage	3.0e-62	62.4
WP_113684727.1\|3246928_3248156_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	2.2e-177	99.0
WP_106376905.1\|3248277_3248511_-	hypothetical protein	NA	NA	NA	NA
WP_000555617.1\|3251172_3252087_+	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA
WP_000983727.1\|3252086_3252914_+	iron/manganese ABC transporter ATP-binding protein SitB	M1IB70	Acanthocystis_turfacea_Chlorella_virus	5.6e-07	26.9
WP_001101719.1\|3252910_3253768_+	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA
WP_000968123.1\|3253764_3254643_+	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA
WP_000973518.1\|3257232_3259434_-	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_012311881.1\|3259515_3260793_-	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_001015723.1\|3260789_3262532_-	aerobactin synthase IucC	NA	NA	NA	NA
WP_000011911.1\|3262531_3263479_-	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_000602863.1\|3263479_3265204_-	aerobactin synthase IucA	NA	NA	NA	NA
WP_000095522.1\|3265339_3266533_+	MFS transporter	NA	NA	NA	NA
WP_032145598.1\|3270341_3270566_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_000920000.1\|3270858_3271968_-	YadA-like family protein	Q9MCI8	Enterobacteria_phage	2.0e-20	76.5
WP_032346664.1\|3272790_3272904_-\|transposase	transposase	Q6H9S5	Enterobacteria_phage	1.2e-08	74.3
WP_001323513.1\|3274496_3274688_+	hypothetical protein	NA	NA	NA	NA
WP_001323514.1\|3274756_3275005_+	osmoprotectant transport activator ProQ	Q2A0A1	Sodalis_phage	8.3e-07	39.1
WP_001167455.1\|3275022_3275571_-	hypothetical protein	NA	NA	NA	NA
WP_000958153.1\|3275771_3276008_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000991602.1\|3276076_3276649_-	hypothetical protein	NA	NA	NA	NA
WP_001075482.1\|3277009_3277741_-	inovirus Gp2 family protein	NA	NA	NA	NA
WP_000147745.1\|3279259_3280390_-	hypothetical protein	NA	NA	NA	NA
WP_000010402.1\|3280574_3281459_+	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_001282919.1\|3281661_3282342_+	WYL domain-containing protein	NA	NA	NA	NA
WP_001097302.1\|3282489_3283167_+	hypothetical protein	NA	NA	NA	NA
WP_001278287.1\|3283172_3283406_+	DUF905 family protein	NA	NA	NA	NA
WP_001175148.1\|3283495_3284314_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.5e-47	40.1
WP_000860076.1\|3284395_3284875_+	antirestriction protein	A0A2D0W9W4	Bordetella_phage	8.9e-13	33.8
WP_001424026.1\|3284890_3285367_+	RadC family protein	NA	NA	NA	NA
WP_000692309.1\|3285429_3285651_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	8.5e-11	45.8
WP_001285415.1\|3285730_3286105_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000854735.1\|3286151_3286529_+	toxin	NA	NA	NA	NA
WP_000761676.1\|3286525_3287014_+	hypothetical protein	NA	NA	NA	NA
WP_000839291.1\|3287025_3287223_+	DUF957 domain-containing protein	NA	NA	NA	NA
WP_001280433.1\|3287307_3288174_+	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_001143297.1\|3288245_3288509_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_000779482.1\|3288505_3288832_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001298261.1\|3290288_3291272_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.4e-36	31.4
WP_000905920.1\|3291343_3292492_+	capsule polysaccharide export inner-membrane protein KpsE	NA	NA	NA	NA
WP_001332993.1\|3292515_3294192_+	polysialic acid transporter KpsD	NA	NA	NA	NA
WP_012311673.1\|3294201_3294942_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000579532.1\|3294938_3296972_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_001161844.1\|3296994_3298200_+	capsular biosynthesis protein	NA	NA	NA	NA
WP_000575413.1\|3299835_3301065_-	hypothetical protein	NA	NA	NA	NA
WP_000197078.1\|3301054_3302203_-	hypothetical protein	NA	NA	NA	NA
WP_000723248.1\|3302195_3303371_-	UDP-N-acetylglucosamine 2-epimerase (hydrolyzing)	NA	NA	NA	NA
WP_001259304.1\|3303367_3304624_-	N-acylneuraminate cytidylyltransferase	NA	NA	NA	NA
WP_000066002.1\|3304623_3305664_-	N-acetylneuraminate synthase	NA	NA	NA	NA
WP_000038461.1\|3305660_3306284_-	acetyltransferase	NA	NA	NA	NA
WP_000590258.1\|3306333_3306993_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	2.9e-06	25.7
WP_000124301.1\|3306989_3307766_-	ABC transporter permease	NA	NA	NA	NA
WP_012311830.1\|3308799_3309999_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	O80301	Enterobacteria_phage	3.5e-167	93.2
WP_001175008.1\|3310057_3310462_+\|transposase	IS200/IS605 family transposase	I4AZM1	Saccharomonospora_phage	1.4e-32	54.4

DBSCAN-SWA_7

4081596 : 4092196

Enterobacteria_phage(100.0%)

integrase

attL 4071907:4071920|attR 4088848:4088861

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4071907:4071920	attL	NA	NA	NA	NA
WP_001218976.1\|4081596_4082760_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.2e-209	92.7
WP_000365012.1\|4082772_4085493_+	SIR2 family protein	NA	NA	NA	NA
WP_012311686.1\|4085694_4086267_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	5.3e-97	98.9
WP_000984201.1\|4086281_4086527_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	1.8e-41	100.0
WP_001283022.1\|4086523_4087258_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.3e-128	97.5
WP_001149160.1\|4087810_4088077_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_000980222.1\|4088073_4088664_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.1e-60	90.3
WP_001244665.1\|4088656_4088944_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
4088848:4088861	attR	NA	NA	NA	NA
WP_000459327.1\|4088936_4089392_+	hypothetical protein	Q7M298	Enterobacteria_phage	1.0e-63	98.2
WP_000856729.1\|4089527_4089848_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000783687.1\|4089862_4092196_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	99.1

DBSCAN-SWA_8

4371622 : 4461152

Escherichia_phage(32.0%)

head,tail,plate,integrase,protease,lysis,tRNA,holin,terminase,capsid,transposase,portal

attL 4408771:4408817|attR 4443772:4443818

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000560983.1\|4371622_4372060_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_001297068.1\|4372104_4373046_+	fatty acid biosynthesis protein FabY	NA	NA	NA	NA
WP_000226332.1\|4373461_4375276_+	hypothetical protein	NA	NA	NA	NA
WP_001298592.1\|4375971_4376190_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_001309881.1\|4376408_4376651_+	hypothetical protein	NA	NA	NA	NA
WP_000027718.1\|4376979_4377909_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_000829018.1\|4377905_4378541_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_000331377.1\|4378537_4379440_-	formate dehydrogenase O subunit beta	NA	NA	NA	NA
WP_012311905.1\|4379452_4382503_-	formate dehydrogenase-N subunit alpha	A0A077SK27	Escherichia_phage	1.1e-07	23.8
WP_000753600.1\|4382696_4383533_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_000105771.1\|4383842_4385678_+	ATP-binding protein	A0A1V0SAD6	Catovirus	6.6e-24	24.3
WP_000355938.1\|4385679_4387986_+	hypothetical protein	NA	NA	NA	NA
WP_012311904.1\|4388180_4389236_+	YiiG family protein	NA	NA	NA	NA
WP_000931327.1\|4389291_4391040_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_001019502.1\|4391039_4392110_-	aminopeptidase	NA	NA	NA	NA
WP_000446000.1\|4392099_4393551_-	PTS fructose-like transporter subunit IIBC	NA	NA	NA	NA
WP_000729606.1\|4393561_4394008_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA
WP_000749944.1\|4394484_4395879_+	carbohydrate porin	NA	NA	NA	NA
WP_000619503.1\|4395919_4396234_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_001179733.1\|4396243_4397068_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_000211494.1\|4397150_4398410_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_000144113.1\|4398406_4399876_-	rhamnulokinase	NA	NA	NA	NA
WP_000217150.1\|4400163_4401000_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_012311625.1\|4400983_4401922_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_000063508.1\|4401918_4402953_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_001361705.1\|4403237_4403858_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	1.1e-63	59.3
WP_001166063.1\|4404117_4405101_+	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA
WP_001270277.1\|4405249_4405924_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_000580417.1\|4406028_4407402_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	3.8e-16	25.9
WP_001033722.1\|4407398_4408097_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_001223800.1\|4408246_4408747_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
4408771:4408817	attL	NA	NA	NA	NA
WP_000023386.1\|4408932_4409913_-\|integrase	tyrosine-type recombinase/integrase	U5N0A8	Enterobacteria_phage	2.3e-185	99.7
WP_001192857.1\|4409982_4410276_-	helix-turn-helix domain-containing protein	Q1JS45	Enterobacteria_phage	1.0e-48	100.0
WP_000453534.1\|4410428_4410701_+	hypothetical protein	Q1JS44	Enterobacteria_phage	1.5e-46	100.0
WP_024210514.1\|4410676_4410874_+	hypothetical protein	S4TNZ7	Salmonella_phage	1.8e-28	96.9
WP_000217671.1\|4410870_4411371_+	hypothetical protein	S4TTB7	Salmonella_phage	1.7e-91	99.4
WP_000557703.1\|4411434_4411659_+	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_001277958.1\|4411658_4411961_+	DUF5405 family protein	U5N0U2	Enterobacteria_phage	5.0e-46	98.0
WP_001113264.1\|4411960_4412185_+	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_000027667.1\|4412181_4412457_+	DUF5405 family protein	Q858T5	Yersinia_virus	3.8e-45	100.0
WP_000268608.1\|4412446_4414732_+	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	97.4
WP_001696366.1\|4414731_4415184_+	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	1.0e-79	96.7
WP_000554771.1\|4415183_4415390_+	hypothetical protein	Q2P9X3	Enterobacteria_phage	2.4e-31	97.0
WP_001143634.1\|4415632_4416571_+	DNA cytosine methyltransferase	Q7Y4B5	Escherichia_virus	3.1e-187	100.0
WP_001350076.1\|4416567_4417593_-	hypothetical protein	Q7Y4B4	Escherichia_virus	3.3e-198	100.0
WP_000368931.1\|4417597_4418671_-	ParB N-terminal domain-containing protein	Q7Y4B3	Escherichia_virus	1.2e-203	100.0
WP_000038165.1\|4419086_4420121_-\|portal	phage portal protein	M1SV64	Escherichia_phage	4.2e-201	99.7
WP_000156845.1\|4420120_4421893_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCM8	Escherichia_phage	0.0e+00	99.8
WP_001085972.1\|4422066_4422921_+\|capsid	GPO family capsid scaffolding protein	Q94MI4	Enterobacteria_phage	1.3e-139	100.0
WP_001248571.1\|4422979_4424053_+\|capsid	phage major capsid protein, P2 family	Q94MI3	Enterobacteria_phage	2.5e-201	99.4
WP_000203422.1\|4424056_4424800_+\|terminase	terminase endonuclease subunit	Q94MG8	Enterobacteria_phage	2.8e-122	100.0
WP_000988633.1\|4424899_4425409_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_000846415.1\|4425408_4425612_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	8.8e-31	98.5
WP_000123127.1\|4425615_4425897_+\|holin	phage holin family protein	A0A0F7LA12	Escherichia_phage	3.7e-43	98.9
WP_001144099.1\|4425896_4426394_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	1.7e-91	98.8
WP_000736589.1\|4426408_4426834_+	hypothetical protein	A0A0F7LBP4	Escherichia_phage	1.4e-57	93.6
WP_000040662.1\|4426821_4427247_+\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	5.5e-67	98.6
WP_000917174.1\|4427354_4427822_+\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	1.9e-81	98.7
WP_001001781.1\|4427814_4428267_+	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	2.4e-76	99.3
WP_000490546.1\|4428338_4429124_-	hypothetical protein	NA	NA	NA	NA
WP_001093714.1\|4429207_4429843_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	2.6e-113	98.6
WP_000127163.1\|4429839_4430187_+	GPW/gp25 family protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
WP_001121500.1\|4430191_4431100_+\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	6.3e-161	99.0
WP_001285325.1\|4431092_4431623_+\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	2.3e-102	100.0
WP_000104681.1\|4431633_4433655_+\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	3.5e-260	64.5
WP_000972099.1\|4433656_4434184_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	5.1e-86	88.6
WP_000014361.1\|4434399_4435299_+	hypothetical protein	Q7Y4D2	Escherichia_virus	4.0e-168	99.7
WP_001286680.1\|4435618_4436809_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.4e-224	99.5
WP_001251408.1\|4436821_4437340_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001031303.1\|4437396_4437672_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_000785970.1\|4437704_4437824_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_000069974.1\|4437816_4440264_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	0.0e+00	95.0
WP_000978888.1\|4440278_4440758_+\|tail	phage tail protein	O64315	Escherichia_phage	7.3e-84	98.7
WP_000882932.1\|4440757_4441921_+	phage late control D family protein	M1SV93	Escherichia_phage	2.9e-203	98.2
WP_000468308.1\|4442002_4442221_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_024179531.1\|4442259_4443606_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_001076748.1\|4443896_4444799_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
4443772:4443818	attR	NA	NA	NA	NA
WP_000591795.1\|4444979_4445942_+	6-phosphofructokinase	NA	NA	NA	NA
WP_001045689.1\|4446261_4447251_+	sulfate/thiosulfate ABC transporter substrate-binding protein Sbp	NA	NA	NA	NA
WP_000708998.1\|4447357_4448113_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_001216325.1\|4448167_4448935_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_000802233.1\|4449042_4449642_-	YiiQ family protein	NA	NA	NA	NA
WP_000155257.1\|4449742_4450183_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000655986.1\|4450394_4450694_+	DUF406 domain-containing protein	NA	NA	NA	NA
WP_000323555.1\|4450720_4451149_+	universal stress protein UspD	NA	NA	NA	NA
WP_000796322.1\|4451153_4451900_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_001250644.1\|4451996_4453007_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000136788.1\|4453141_4454650_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_000084268.1\|4454672_4455518_-	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
WP_001296623.1\|4455942_4456188_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_122991692.1\|4456226_4456853_-	hypothetical protein	NA	NA	NA	NA
WP_001572157.1\|4456975_4457650_-	hypothetical protein	NA	NA	NA	NA
WP_000872908.1\|4457709_4458195_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_001305044.1\|4458287_4459214_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_001293344.1\|4459280_4460612_-	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
WP_000208242.1\|4460621_4461152_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010488

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_010498

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection