CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010794	Methylacidiphilum infernorum V4, complete sequence	6 crisprs	cas2,cas1,csm3gr7,cas10,Cas9_archaeal,c2c9_V-U4,csa3	0	13	1	0

1. NC_010794

CRISPR-Cas detection and classification

Crispr_ID: NC_010794_1

• CRISPR_ID: NC_010794_1
• CRISPR_location: 819598-819769
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 2 spacers
• Cas_protein_info: cas2,cas1

Consensus repeat of NC_010794_1

Consensus_repeat	Method
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	CRISPRCasFinder
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACAGTA	PILER-CR

spacers of NC_010794_1

>1.1|819633|30|NC_010794|CRISPRCasFinder
AGTACCAGGTGGGGAACCTGACGGCCACGA
>1.2|819698|33|NC_010794|CRISPRCasFinder
AGATTGGAGAGTAATAAAGACGGATAAGTTTGG
>1.3|819642|26|NC_010794|PILER-CR
CCAGGTGGGGAACCTGACGGCCACGA
>1.4|819707|29|NC_010794|PILER-CR
TGGAGAGTAATAAAGACGGATAAGTTTGG

CRISPR arrays and Neighbor proteins around NC_010794_1

CRISPR arrays

The CRISPR arrays of NC_010794_1

>merge|NC_010794|1|819598-819769|CRISPRCasFinder,PILER-CR
AGCCTAAGCCCAGTGCACTGGGATACATCATCAACAGTACCAGGTGGGGAACCTGACGGCCACGAGTTTCAAGCCCAGTGCACTGGGATACATCATCAACAGATTGGAGAGTAATAAAGACGGATAAGTTTGGGTTTCAAGCCCAGTGCACTGGGATACATCATCAACTGTA

>NC_010794|1|1|819598-819765|CRISPRCasFinder
AGCCTAAGCCCAGTGCACTGGGATACATCATCAAC	AGTACCAGGTGGGGAACCTGACGGCCACGA
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	AGATTGGAGAGTAATAAAGACGGATAAGTTTGG
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC

>NC_010794|1|1|819603-819769|PILER-CR
AAGCCCAGTGCACTGGGATACATCATCAACAGTACCAGG	TGGGGAACCTGACGGCCACGAGTTTC
AAGCCCAGTGCACTGGGATACATCATCAACAGATTGGAG	AGTAATAAAGACGGATAAGTTTGGGTTTC
AAGCCCAGTGCACTGGGATACATCATCAACTGTA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010794.1|WP_148205123.1|816167_816419_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_148205126.1|829538_829868_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl|CDD|376633
NC_010794.1|WP_187146971.1|829081_829243_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA	unknown	unknown	gnl|CDD|214920
NC_010794.1|WP_012463182.1|804840_806331_+|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl|CDD|183987
NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein	unknown	unknown	gnl|CDD|224117
NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase	unknown	unknown	gnl|CDD|223360
NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein	unknown	unknown	gnl|CDD|238978
NC_010794.1|WP_048810128.1|821033_821312_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010794.1|WP_012463183.1|806327_807200_+|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl|CDD|376304
NC_010794.1|WP_012463203.1|822964_823381_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012463180.1|803797_804064_+|ATP-synthase-F0-subunit-C	unknown	unknown	gnl|CDD|184067
NC_010794.1|WP_079200413.1|804079_804844_+|F0F1-ATP-synthase-subunit-delta	unknown	unknown	gnl|CDD|132364
NC_010794.1|WP_012463186.1|808526_809618_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein	unknown	unknown	gnl|CDD|223510
NC_010794.1|WP_187146969.1|809846_810821_+|DUF4338-domain-containing-protein	unknown	unknown	gnl|CDD|372975
NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein	unknown	unknown	gnl|CDD|225224

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	3.2e-12	41.0	0.0
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.5e-13	45.5	0.0
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	9.4e-13	43.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.34711e-11
NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA	gnl|CDD|214920	smart00933, NurA, NurA nuclease. This family includes NurA a nuclease exhibiting both single-stranded endonuclease activity and 5'-3' exonuclease activity on single-stranded and double-stranded DNA from the hyperthermophilic archaeon Sulfolobus acidocaldarius.	2.18288e-15
NC_010794.1|WP_012463182.1|804840_806331_+|F0F1-ATP-synthase-subunit-alpha	gnl|CDD|183987	PRK13343, PRK13343, F0F1 ATP synthase subunit alpha; Provisional.	0
NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase	gnl|CDD|223360	COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism].	1.92708e-12
NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein	gnl|CDD|238978	cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.	1.0001e-05
NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein	gnl|CDD|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.000203486
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.25555e-11
NC_010794.1|WP_012463183.1|806327_807200_+|F0F1-ATP-synthase-subunit-gamma	gnl|CDD|376304	pfam00231, ATP-synt, ATP synthase.	1.10071e-23
NC_010794.1|WP_012463180.1|803797_804064_+|ATP-synthase-F0-subunit-C	gnl|CDD|184067	PRK13468, PRK13468, F0F1 ATP synthase subunit C; Provisional.	3.42052e-19
NC_010794.1|WP_079200413.1|804079_804844_+|F0F1-ATP-synthase-subunit-delta	gnl|CDD|132364	TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.	5.29041e-27
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.58793e-10
NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein	gnl|CDD|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	2.21247e-09
NC_010794.1|WP_187146969.1|809846_810821_+|DUF4338-domain-containing-protein	gnl|CDD|372975	pfam14236, DUF4338, Domain of unknown function (DUF4338). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 206 and 475 amino acids in length.	5.93262e-39
NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein	gnl|CDD|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	0.00267955

Protein sequences

>NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein
MTYGISDLQILLEDPQTGKLFRGYPEKKLTRLFHDDFLKEQQQVEVIDWPPEDEELKKKEKEINEKIFSDIKENLFKMQDCHSLRPKRGTNGQLLIVLPKTTPLIAPLLSSGVPGSENSPSSETSKTKGKDRKIDPRMLTVLLLGTDRKNEYQEPVAFSRFFKQWLIRKGVKEENIHQENYLKDNENLEKESSEINPQVAERIRQSIWNFYKPNTNSQLFVCDTGGIPKVRELIKELAFLLAGDRVQILKKTERELVGPVQTPSPIDVVRVRRECLQQVRRGALLDASAIASAFSPKLNPIDSQAESWVKRLRLAAQLINGNPSTKERGFPAFNALLEHIKKASCLLVAIRVETALLTGHWLEAINGSLTFLDVAYRDAIKEWAERNSSKYSIKYNIEKDFIEFTESTPEYIKEYSTKFREIEKNENLETTPNGIKVRVGGIKYLNLWDDLFNKQELSDFKIQELSYLKDLFYNYSDKNRNLAQYRNINTHALLKQKEIEEAVRDFKKAKIWGEKVNAKLDPENPPVPGECFLGRDPIKKVIKKFLKNSVKPPGTLYRDLLEELEDSLINSPLSN
>NC_010794.1|WP_148205123.1|816167_816419_+|hypothetical-protein
MPKNYIRIEDLLLQGNSSVLFGKIGEEKRSGCHERKKASIFKLDDLQLISYFCKFALSFLHLIQWIFSFPTLWITSSDWDRSS
>NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein
MNVDQNKDIEQLIDNTERIGTIGSPSSTSELSIDILGTAVSKKLVGELACFRFSQDEKSHIALGQITEVQLKNIWLEDPTMRSLARQRGNVNPISGQQDTHLGEMTVSAVFSKDGYKFEPSMLGTVPATGTPIHLATDQVMNTLLAQHKDEIWYLGHVYGSKPKLPMWFKHFGSGPRGAGEAYHIGIFGKNGSGKSTLAAMMLVAYARHPEMAIFIIDPQGQFSKHAKGQTNTEGFQLGLNTLLRNFNKKVIIKSVKELILDRWDLFCEILIESRFFELLSISEGDYRRIAAERITDELKKKNIKLKDLYQPSSFDSAWKVLGDPNVQMQIYKTKESRERFQTLYKESDKNEFYNKYWKPVTELFNKDRENTMAIKDLIKLAFSVDGGFPATNNCRPVVIIDLYLSKEEANVSGLYWNDTIQALVIKRLLDEIIYSAERAYHNNKLLNTLVVFDEAQKFAPREGFNWASNKVIEKLERVRQQLLDAIRTTRKYGLGWMFISQTLSSLHKDIISQIRIFFFGFGLALGTEFMSLKEIAGGESNALKLYQSFRDPHCAFEVSSKQYSFMTVGPVSPLSFSGTPLFFTAFNKPEEFISENGLNRQFDRDKNASNELFLDFNVN
>NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA
MLSKSETIGDRLYDSFKEIRNRKLDYRQQLQNRNFLKLETEVGYPGIPTTCGIDGSYGVEKLLAADFAACAAVAVEGLIPPSEKKYWEKPHHRVFIHPEKHDPDTGVMIRSVMMEMEVELAAKAPHDVVFLDGSLTTPLIYLNQAVNRLFELEDKESETGAKLIEKFEGFLKDYKTILESSRTDKLWVSLPKYTSRRELGKIFNWPSHYDDRAMLTHVLSPGEFTVPVQLEKPKQPWHLKTPNNDGKLEKLKDEVISAVQRIHVMYYKPHPWTPVFRIEMSSSIATNSSRIAVLLQAIKFQSGTPGIIEPYPIYIADRIVKHLGKAIPAFRQIASRRMVELHDGDIGDIVFTMHGYRTESEK
>NC_010794.1|WP_187146969.1|809846_810821_+|DUF4338-domain-containing-protein
MKYISKVRNYCRNGCEINPEKISLELIEIRKKSFEETLFKWWNLAWWSIPYQRPYGRQMRFLLWDTAHDSPFGLISLQSPILKISVRDKFLDIPRENLDLWVNMSMQAQRVGSLPPYNELLGGKLVAITLTCNEIREAYKKKYKHSVTLLRNRKLEPDLLFITTTSAFGKSSLYNRLKYNGENVALSLGYTKGSGTFHIPEQLYLEILRYLSKKGYDVSRGFGHGPSRKLKLISLGLRCLKLPKFDFHGIKREFFIFPLVKNLKEVIHESENPIWVDRPFCKLVNYWKERWAIPRMERIQKWKYFNCSEFFDNIERQLKGMEDV
>NC_010794.1|WP_012463186.1|808526_809618_+|hypothetical-protein
MGIFFIVLYLVLAAMLLSVLNILNINIIILLFIFILIFLLLLFFAPSVIVLYLIHFTWDENYKTFGNLYFVENRYAQAQKALFSLFSRLSGVLIILGFLPRAIKAYEHGISFAPLNITEDLSFSAVFWSTTIINTAVILITYLFYIHYVARQIVLAEDWIEEEKIKIKKIKKMVKNIAQMKLPWQKSIFKKIIIIPKRFIKNHIILRITLLVFFLIILFSITLYIIILHIDIIYYLKKEPIYAYILLIILLTPISISCIISILYLPRRSIIVLDGSILLILCSLLIIPDIINSVDQYPQQYGGFRPEHYIAKWKGEDKEKRISVVYKTDKFLFCQPEDAQKNPNWKCSILSTEGLERLVPDTK
>NC_010794.1|WP_012463183.1|806327_807200_+|F0F1-ATP-synthase-subunit-gamma
MSKRRDLIKYRGALLEIGEIMKAMKNMALVEQKKMARYYESQKRAIDTLQTIAEDFFPAFPELLPQPHRIDRPLYILIGSERGFCGDFNSTLVGFWENLENSGNLADRYGLILVGNKLESRASHLKQIIQRVPGPSVAEEIYPFILDFLDTVRKSLIEGEPPTSIAVFFHMADSLEIEKKTLLPIPVSEEKIRSARKRSAVSPLLHLSPREFFVDLVDSFLVSGLFFAFYSSLLAESKIRMQHMQSALDQLEKKVQELNKQANRLRQEEIIEEIEVILLGSETLMKKRLR
>NC_010794.1|WP_012463182.1|804840_806331_+|F0F1-ATP-synthase-subunit-alpha
MSPIEKVSHWVDQYRLDPKVEEFGRVVAIGDGTAWIDGLSMAAIDDLLECEEGSVALVYSLSEKLVGAIMLIQTEKISSGTLVHRTGRRLSVPVGDELLGRVIDPLGNPLDGKGALNCSKERLLEVKAPAIIDRDFVNEPLYTGNKIVDAMIPIGKGQRELLIGDNGLGKTTFALDTIVNQKDKNVLCIYCLIGQKRSTVVHVIDTLKATGALDYTTVVVAEATSLPGLQYIAPFSGCTIAEEWMERGKDTLVVYDDLSLHAQTYRELSLLLRRPPGREAYPGDVFYLHSRLLERSTHLSPLKGGGSMTTLPIVETQQGELAAYIPTNLISITDGQVYFEQFLFSSGFLPAIDVTRSVSRIGGAAQHPHLRKEAGRMKLDYLQFLELEVFTRFGTKLEASLEKKIARGRVLRELLKQERLSPISPQQEYCWLIAFNEGLFDDIPMDCLREVQEELLKKFEKSPLSLDDPREKWLKEIKEAFSTIQEKTNKKLQKVA
>NC_010794.1|WP_079200413.1|804079_804844_+|F0F1-ATP-synthase-subunit-delta
MNWNKLTFFLQIFNFLVFVWLLKKFLYKPVFDLIKQRKEAVAGMWQEAERARQEAQKLKADYENRLLIWEEEKKKAREELEEELRIQRAKLIAENQKALELEKERNRVLEEKRKKEMELEAENRALQVGARFVARLLSSLASEEVERKLIGLCLEKLRSLPQETLELIRRSMEREGVEKGVVKSVFPIGEELRERLRETIKQVVEKELAIEFDQDPQLLAGIRIIIGSWIARASIKDELEFFLQGKKEDTEVSL
>NC_010794.1|WP_012463180.1|803797_804064_+|ATP-synthase-F0-subunit-C
MTNIGLFSTLVTAMAVLAIGLGVVGPGLGMGIAIAKALEAIARQPELEKSITRWLLIGLAMIESLAIYVLVVVLIVLFRSPMLEYLTK
>NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein
MFLEARFKFFLDANLETRKSRRKLDGEANNVEKRDELSYLFKPKDAVMIDTTSFPVYKGASKIVSHLINCKDEELVIYPSALGLGYLGLAGLYRATLCKRQCGDGRIGGSGSDRADWLSEV
>NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase
MAKLIVTIDGTTASGKSTVVGEVAKITGFAYFSTSLLYRSVTQKLLDDCVNWRNKWAVIEACGNMKFVLKLKK
>NC_010794.1|WP_048810128.1|821033_821312_+|hypothetical-protein
MKEVKKNDDKNKTKDTVYKGKTAKNGKPVVTVTENGKTKFFPMYNNEFDLPPGGSFAWRYGGTAPWRLSYSILRHHTDEKQEKYGKLCLGFL
>NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein
MEEKLEETLRKLAAGQERLENRTEDLGASVGELTRVVRELTGVVRELAERQANTDRMLGELTGAVRELAERQADTDRMIGELTRVVRELSEHVARTDMRPERIDGRLEKIDKRLEDVHLVATLISIDQRASNSKLDLVAKAIEEIDDVVLESKAKDQLPFSLKEDILDLKVLDKDFVCHIISAAEDKGVLTKAESNDVGKADIFAFGFDKKTGDLVCLAVEVSATIGKNDITMADRRSKLFAKAVRHFVENEPDKWEKMRKMVYPNHH
>NC_010794.1|WP_012463203.1|822964_823381_-|hypothetical-protein
MEEKLEETLRKLAAGQERLENKTEILAAAVEELSAKTERRFEDMASAVRELTRAVGELAERQANTDRMIGELTRVVRELSEHAARTDMRLERIEKRLEDIHLVATLISIDQRAGNSKLDLVVETIDDLISLSSCSRLS
>NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2
MGVRQYGVAYDLSDNRERAMVERCISRYGQRLQKSLFSCVLDPKRYMQLQGELAGLRCASGNVVMAALADPVAIVQIGSVKPKAATEDWVFGHCSGLGELGSLPWKAFPSGPGHSG
>NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2
MGVRQYWVAYDLSDNRERAMVERCISRYGQRLQKSLFSCVLDPKRYMQLQGELAGLRCTSGSVVMAALADPVAIVQIGSVKSEVVTEDWVFGLFSGLGELGSLPWKAFPSGPGHSG
>NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1
MIQPLCVDRLYQLSWLEIDLVLRAHSPPRRAHPLAVLEALLKGVFESAHLDPSTVKQLWWWPGVKVEAMGWETGSRIPITVQLFGLGTSSIQAWIEQLYARFTERGQNFDLLKVSPWRVAKPPSPTKEPSPALALDFLTPVPLPHRPGTPRTALDGEGFLRLCQSRLRKLFGTEGQLPPPPELDTTSWQYWRTAHRSSSQRGNPMFLHGCIGPLRLFGPELPAWKPWLALFAAVGLGERLSFSHGRLELRSAEVVVPGQNDPAPLQLRRPFVLDVHLHGCRLSLSNANLVVETSADESIKLLPLLRISNIELHSACQVSTALLQACAELDIPVLLALPGRTPIHILGPSAEANRYRTLAAHHSAWQSLDEPGRVQLAARLISAKLAGMPTLCANVTARTTTSSWSGSREPASASFMPGNCPPCAAGKDGPADTTGDGSPNRSTNWEALKSVARTGKPRIRST
>NC_010794.1|WP_187146971.1|829081_829243_-|hypothetical-protein
MFIYPQANVAFLNCIPVKSTIQGLPAESTQPAKLDWNLLEKLEKHFIQPTKLE
>NC_010794.1|WP_148205126.1|829538_829868_-|hypothetical-protein
MAQNVSSPAAARVGLSWDWTASAHKRFIEPPSDRRLPSCVAMSVENELLTQLRFETINATPDLFDPAFNDSINSRLIADLAYMIQKKVLCMSTIPLRWTRLKDPGETAP

Crispr_ID: NC_010794_2

• CRISPR_ID: NC_010794_2
• CRISPR_location: 823735-823970
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 3 spacers
• Cas_protein_info: cas2,cas1,csm3gr7

Consensus repeat of NC_010794_2

Consensus_repeat	Method
AAGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	PILER-CR
AAGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	CRT
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	CRISPRCasFinder

spacers of NC_010794_2

>2.1|823772|30|NC_010794|PILER-CR,CRT
CCAGGTCCAAACCTAGATGAGCAGAATTAT
>2.2|823839|29|NC_010794|PILER-CR,CRT
AGTATACGAAATAGAATACTTAGGAGAAA
>2.3|823905|28|NC_010794|PILER-CR,CRT
TTGGAAGAACAGGCGTTTTTACTACAAA
>2.4|823772|32|NC_010794|CRISPRCasFinder
CCAGGTCCAAACCTAGATGAGCAGAATTATAT
>2.5|823839|31|NC_010794|CRISPRCasFinder
AGTATACGAAATAGAATACTTAGGAGAAAAA
>2.6|823905|30|NC_010794|CRISPRCasFinder
TTGGAAGAACAGGCGTTTTTACTACAAAAA

CRISPR arrays and Neighbor proteins around NC_010794_2

CRISPR arrays

The CRISPR arrays of NC_010794_2

>merge|NC_010794|2|823735-823970|PILER-CR,CRT,CRISPRCasFinder
AAGTTTCAAGCCCAGTGCACTGGGATACATCATCAACCCAGGTCCAAACCTAGATGAGCAGAATTATATGTTTCAAGCCCAGTGCACTGGGATACATCATCAACAGTATACGAAATAGAATACTTAGGAGAAAAAGTTTCAAGCCCAGTGCACTGGGATACATCATCAACTTGGAAGAACAGGCGTTTTTACTACAAAAAGTTTCAAGCCCAGTGCACTGGGATACATCATCAACT

>NC_010794|2|2|823735-823969|PILER-CR
AAGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	CCAGGTCCAAACCTAGATGAGCAGAATTAT
ATGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	AGTATACGAAATAGAATACTTAGGAGAAA
AAGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	TTGGAAGAACAGGCGTTTTTACTACAAA
AAGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC

>NC_010794|2|1|823735-823969|CRT
AAGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	CCAGGTCCAAACCTAGATGAGCAGAATTAT
ATGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	AGTATACGAAATAGAATACTTAGGAGAAA
AAGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	TTGGAAGAACAGGCGTTTTTACTACAAA
AAGTTTCAAGCCCAGTGCACTGGGATACATCATCAAC

>NC_010794|2|2|823737-823970|CRISPRCasFinder
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	CCAGGTCCAAACCTAGATGAGCAGAATTATAT
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	AGTATACGAAATAGAATACTTAGGAGAAAAA
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	TTGGAAGAACAGGCGTTTTTACTACAAAAA
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010794.1|WP_148205123.1|816167_816419_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_148205126.1|829538_829868_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|274902
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl|CDD|376633
NC_010794.1|WP_187146971.1|829081_829243_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA	unknown	unknown	gnl|CDD|214920
NC_010794.1|WP_048810128.1|821033_821312_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase	unknown	unknown	gnl|CDD|223360
NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein	unknown	unknown	gnl|CDD|238978
NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein	unknown	unknown	gnl|CDD|224117
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010794.1|WP_012463203.1|822964_823381_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810135.1|830829_831093_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810136.1|831120_831330_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein	unknown	unknown	gnl|CDD|223510
NC_010794.1|WP_012463211.1|829963_830653_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_187146969.1|809846_810821_+|DUF4338-domain-containing-protein	unknown	unknown	gnl|CDD|372975
NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein	unknown	unknown	gnl|CDD|225224
NC_010794.1|WP_012463214.1|831379_831607_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	1.1e-134	445.5	0.1
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	3.2e-12	41.0	0.0
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.5e-13	45.5	0.0
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	9.4e-13	43.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.34711e-11
NC_010794.1|WP_187146969.1|809846_810821_+|DUF4338-domain-containing-protein	gnl|CDD|372975	pfam14236, DUF4338, Domain of unknown function (DUF4338). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 206 and 475 amino acids in length.	5.93262e-39
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl|CDD|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.66434e-136
NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA	gnl|CDD|214920	smart00933, NurA, NurA nuclease. This family includes NurA a nuclease exhibiting both single-stranded endonuclease activity and 5'-3' exonuclease activity on single-stranded and double-stranded DNA from the hyperthermophilic archaeon Sulfolobus acidocaldarius.	2.18288e-15
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.58793e-10
NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein	gnl|CDD|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	2.21247e-09
NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein	gnl|CDD|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.000203486
NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase	gnl|CDD|223360	COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism].	1.92708e-12
NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein	gnl|CDD|238978	cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.	1.0001e-05
NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein	gnl|CDD|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	0.00267955
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.25555e-11

Protein sequences

>NC_010794.1|WP_012463203.1|822964_823381_-|hypothetical-protein
MEEKLEETLRKLAAGQERLENKTEILAAAVEELSAKTERRFEDMASAVRELTRAVGELAERQANTDRMIGELTRVVRELSEHAARTDMRLERIEKRLEDIHLVATLISIDQRAGNSKLDLVVETIDDLISLSSCSRLS
>NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein
MEEKLEETLRKLAAGQERLENRTEDLGASVGELTRVVRELTGVVRELAERQANTDRMLGELTGAVRELAERQADTDRMIGELTRVVRELSEHVARTDMRPERIDGRLEKIDKRLEDVHLVATLISIDQRASNSKLDLVAKAIEEIDDVVLESKAKDQLPFSLKEDILDLKVLDKDFVCHIISAAEDKGVLTKAESNDVGKADIFAFGFDKKTGDLVCLAVEVSATIGKNDITMADRRSKLFAKAVRHFVENEPDKWEKMRKMVYPNHH
>NC_010794.1|WP_048810128.1|821033_821312_+|hypothetical-protein
MKEVKKNDDKNKTKDTVYKGKTAKNGKPVVTVTENGKTKFFPMYNNEFDLPPGGSFAWRYGGTAPWRLSYSILRHHTDEKQEKYGKLCLGFL
>NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase
MAKLIVTIDGTTASGKSTVVGEVAKITGFAYFSTSLLYRSVTQKLLDDCVNWRNKWAVIEACGNMKFVLKLKK
>NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein
MFLEARFKFFLDANLETRKSRRKLDGEANNVEKRDELSYLFKPKDAVMIDTTSFPVYKGASKIVSHLINCKDEELVIYPSALGLGYLGLAGLYRATLCKRQCGDGRIGGSGSDRADWLSEV
>NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein
MTYGISDLQILLEDPQTGKLFRGYPEKKLTRLFHDDFLKEQQQVEVIDWPPEDEELKKKEKEINEKIFSDIKENLFKMQDCHSLRPKRGTNGQLLIVLPKTTPLIAPLLSSGVPGSENSPSSETSKTKGKDRKIDPRMLTVLLLGTDRKNEYQEPVAFSRFFKQWLIRKGVKEENIHQENYLKDNENLEKESSEINPQVAERIRQSIWNFYKPNTNSQLFVCDTGGIPKVRELIKELAFLLAGDRVQILKKTERELVGPVQTPSPIDVVRVRRECLQQVRRGALLDASAIASAFSPKLNPIDSQAESWVKRLRLAAQLINGNPSTKERGFPAFNALLEHIKKASCLLVAIRVETALLTGHWLEAINGSLTFLDVAYRDAIKEWAERNSSKYSIKYNIEKDFIEFTESTPEYIKEYSTKFREIEKNENLETTPNGIKVRVGGIKYLNLWDDLFNKQELSDFKIQELSYLKDLFYNYSDKNRNLAQYRNINTHALLKQKEIEEAVRDFKKAKIWGEKVNAKLDPENPPVPGECFLGRDPIKKVIKKFLKNSVKPPGTLYRDLLEELEDSLINSPLSN
>NC_010794.1|WP_148205123.1|816167_816419_+|hypothetical-protein
MPKNYIRIEDLLLQGNSSVLFGKIGEEKRSGCHERKKASIFKLDDLQLISYFCKFALSFLHLIQWIFSFPTLWITSSDWDRSS
>NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein
MNVDQNKDIEQLIDNTERIGTIGSPSSTSELSIDILGTAVSKKLVGELACFRFSQDEKSHIALGQITEVQLKNIWLEDPTMRSLARQRGNVNPISGQQDTHLGEMTVSAVFSKDGYKFEPSMLGTVPATGTPIHLATDQVMNTLLAQHKDEIWYLGHVYGSKPKLPMWFKHFGSGPRGAGEAYHIGIFGKNGSGKSTLAAMMLVAYARHPEMAIFIIDPQGQFSKHAKGQTNTEGFQLGLNTLLRNFNKKVIIKSVKELILDRWDLFCEILIESRFFELLSISEGDYRRIAAERITDELKKKNIKLKDLYQPSSFDSAWKVLGDPNVQMQIYKTKESRERFQTLYKESDKNEFYNKYWKPVTELFNKDRENTMAIKDLIKLAFSVDGGFPATNNCRPVVIIDLYLSKEEANVSGLYWNDTIQALVIKRLLDEIIYSAERAYHNNKLLNTLVVFDEAQKFAPREGFNWASNKVIEKLERVRQQLLDAIRTTRKYGLGWMFISQTLSSLHKDIISQIRIFFFGFGLALGTEFMSLKEIAGGESNALKLYQSFRDPHCAFEVSSKQYSFMTVGPVSPLSFSGTPLFFTAFNKPEEFISENGLNRQFDRDKNASNELFLDFNVN
>NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA
MLSKSETIGDRLYDSFKEIRNRKLDYRQQLQNRNFLKLETEVGYPGIPTTCGIDGSYGVEKLLAADFAACAAVAVEGLIPPSEKKYWEKPHHRVFIHPEKHDPDTGVMIRSVMMEMEVELAAKAPHDVVFLDGSLTTPLIYLNQAVNRLFELEDKESETGAKLIEKFEGFLKDYKTILESSRTDKLWVSLPKYTSRRELGKIFNWPSHYDDRAMLTHVLSPGEFTVPVQLEKPKQPWHLKTPNNDGKLEKLKDEVISAVQRIHVMYYKPHPWTPVFRIEMSSSIATNSSRIAVLLQAIKFQSGTPGIIEPYPIYIADRIVKHLGKAIPAFRQIASRRMVELHDGDIGDIVFTMHGYRTESEK
>NC_010794.1|WP_187146969.1|809846_810821_+|DUF4338-domain-containing-protein
MKYISKVRNYCRNGCEINPEKISLELIEIRKKSFEETLFKWWNLAWWSIPYQRPYGRQMRFLLWDTAHDSPFGLISLQSPILKISVRDKFLDIPRENLDLWVNMSMQAQRVGSLPPYNELLGGKLVAITLTCNEIREAYKKKYKHSVTLLRNRKLEPDLLFITTTSAFGKSSLYNRLKYNGENVALSLGYTKGSGTFHIPEQLYLEILRYLSKKGYDVSRGFGHGPSRKLKLISLGLRCLKLPKFDFHGIKREFFIFPLVKNLKEVIHESENPIWVDRPFCKLVNYWKERWAIPRMERIQKWKYFNCSEFFDNIERQLKGMEDV
>NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2
MGVRQYGVAYDLSDNRERAMVERCISRYGQRLQKSLFSCVLDPKRYMQLQGELAGLRCASGNVVMAALADPVAIVQIGSVKPKAATEDWVFGHCSGLGELGSLPWKAFPSGPGHSG
>NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2
MGVRQYWVAYDLSDNRERAMVERCISRYGQRLQKSLFSCVLDPKRYMQLQGELAGLRCTSGSVVMAALADPVAIVQIGSVKSEVVTEDWVFGLFSGLGELGSLPWKAFPSGPGHSG
>NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1
MIQPLCVDRLYQLSWLEIDLVLRAHSPPRRAHPLAVLEALLKGVFESAHLDPSTVKQLWWWPGVKVEAMGWETGSRIPITVQLFGLGTSSIQAWIEQLYARFTERGQNFDLLKVSPWRVAKPPSPTKEPSPALALDFLTPVPLPHRPGTPRTALDGEGFLRLCQSRLRKLFGTEGQLPPPPELDTTSWQYWRTAHRSSSQRGNPMFLHGCIGPLRLFGPELPAWKPWLALFAAVGLGERLSFSHGRLELRSAEVVVPGQNDPAPLQLRRPFVLDVHLHGCRLSLSNANLVVETSADESIKLLPLLRISNIELHSACQVSTALLQACAELDIPVLLALPGRTPIHILGPSAEANRYRTLAAHHSAWQSLDEPGRVQLAARLISAKLAGMPTLCANVTARTTTSSWSGSREPASASFMPGNCPPCAAGKDGPADTTGDGSPNRSTNWEALKSVARTGKPRIRST
>NC_010794.1|WP_187146971.1|829081_829243_-|hypothetical-protein
MFIYPQANVAFLNCIPVKSTIQGLPAESTQPAKLDWNLLEKLEKHFIQPTKLE
>NC_010794.1|WP_148205126.1|829538_829868_-|hypothetical-protein
MAQNVSSPAAARVGLSWDWTASAHKRFIEPPSDRRLPSCVAMSVENELLTQLRFETINATPDLFDPAFNDSINSRLIADLAYMIQKKVLCMSTIPLRWTRLKDPGETAP
>NC_010794.1|WP_012463211.1|829963_830653_-|hypothetical-protein
MMIVFALVLYLMISSESHNWHRVTGLPIPPIPPGLIPPRWGQVNPYQWLGPNSEKIFKFPNGSVLVNPDLWLEPKPVGKPPGNVWWCIRPEWSSNVWSDEEYESAWQSSDAAVFKAGIKTERGWERWSMTCKDKNQDIESVWERFIDDVLGKIREKISEGKIRGGGYVYMGLLFGQRILNVGVNTCWVLIWDSTQAGHMRQAPYLRWAFPVLSIQEDEPIHEAEQAVEA
>NC_010794.1|WP_048810135.1|830829_831093_+|hypothetical-protein
MLTGIAVLSRLWPWVQDEREKRCEGIEEGSEAVQLSAFSMHPQEASGGELDEINGAEPCSNQFLDEIPGKEQGDLFEIARNNRISGL
>NC_010794.1|WP_048810136.1|831120_831330_+|hypothetical-protein
MNIWGSNGTNCNLQRILIPEIGLFMDILFFGFLANEPLLEKATGGNGLLCVVVAMGARHQNGEQGWIKL
>NC_010794.1|WP_012463214.1|831379_831607_-|hypothetical-protein
MPFYPRLLKRQAGAIESPREMLSTQLKDTFNDRDGNRLKLWNGQANADCKRQVHCQLVFPKIGPAIVKMLLKRYA
>NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MNSLPYGFLPIEVQKSICDVPMWRDGSSGEDRLSGEILLTLEALTPLLVGNQQYKINEKQSVLFPQMLEDGRVLIAGTSLKGMFRAALSSLLHAPMERVGDHRYTFRPNLGFGQKYQSRPAVISSVKGKDENAEIELKVLPDDTRVTFVRNSAIPKPDEKVGKLLQGYFPGIKFTPTRTSRCMVLEKSSEGGKNLDHYLFFYSGGIDGEGLLAKAFRPSNEIYRYVLVHTSDFNRADSQSLPSKVLKDYYETQEILADEKTGHLSPGHPLLNEIKDKVKEVKEAIQNHSELKEKQLIYIEIENLERKPGNPPFRILSMGHHFYYRWAYTSSVCYKNSIGENKELRPELGFHPQETFDKKGAPKQLTAARLFFGYSIDNKQKELSSMAKESYQRLAGRIAFNTAIEVTEGKSLEERFVEGGREIALHILGQPRPSAVEFYLKQVHLPNKLTTYGDLPDDPGGELAGRKYYRHQPDARTNMDLYKKTEEKDNSKERGTVVCYLSKPGTRFRATLRFDSLRPWELGAVLAVLDPGLLEKTFGLTPYSQGYAHKLGYGKPLGLGSVRIRLDAARWQENDRLEWKEARAGEEAWDRLLETSLKALKEKLQKTWQSNTAANLECWLKTKQWSTTGRASYPTLYGTIYRFHAKLRSWQAAARRGARVNFNDLLEGYT

Crispr_ID: NC_010794_3

• CRISPR_ID: NC_010794_3
• CRISPR_location: 824622-824925
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 4 spacers
• Cas_protein_info: cas2,cas1,csm3gr7

Consensus repeat of NC_010794_3

Consensus_repeat	Method
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	CRISPRCasFinder
GTTTCAAGCCCAGTGCACTGGGATA	CRT
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACT	PILER-CR

spacers of NC_010794_3

>3.1|824657|30|NC_010794|CRISPRCasFinder
CCAACCCGCCCTCCTGGGCAATTCCTGGGA
>3.2|824722|33|NC_010794|CRISPRCasFinder
ATCTGGAGAAATCTGAAGCGTTAAGCAGGATAA
>3.3|824790|32|NC_010794|CRISPRCasFinder
TGAACAGGAAGAAATTACAATTCCCGCAGAAA
>3.4|824857|33|NC_010794|CRISPRCasFinder
TGATGCTACAAGGATAATGACACCTCAATTTAG
>3.5|824647|40|NC_010794|CRT
CATCATCAACCCAACCCGCCCTCCTGGGCAATTCCTGGGA
>3.6|824712|43|NC_010794|CRT
CATCATCAACATCTGGAGAAATCTGAAGCGTTAAGCAGGATAA
>3.7|824780|42|NC_010794|CRT
TATCATCAACTGAACAGGAAGAAATTACAATTCCCGCAGAAA
>3.8|824847|43|NC_010794|CRT
CATCATCAACTGATGCTACAAGGATAATGACACCTCAATTTAG
>3.9|824723|32|NC_010794|PILER-CR
TCTGGAGAAATCTGAAGCGTTAAGCAGGATAA
>3.10|824791|31|NC_010794|PILER-CR
GAACAGGAAGAAATTACAATTCCCGCAGAAA
>3.11|824858|32|NC_010794|PILER-CR
GATGCTACAAGGATAATGACACCTCAATTTAG

CRISPR arrays and Neighbor proteins around NC_010794_3

CRISPR arrays

The CRISPR arrays of NC_010794_3

>merge|NC_010794|3|824622-824925|CRISPRCasFinder,CRT,PILER-CR
AGCCTAGGCCCAGTGCACTGGGATACATCATCAACCCAACCCGCCCTCCTGGGCAATTCCTGGGAGTTTCAAGCCCAGTGCACTGGGATACATCATCAACATCTGGAGAAATCTGAAGCGTTAAGCAGGATAAGTTTCAAGCCCAGTGCACTGGGATATATCATCAACTGAACAGGAAGAAATTACAATTCCCGCAGAAAGTTTCAAGCCCAGTGCACTGGGATACATCATCAACTGATGCTACAAGGATAATGACACCTCAATTTAGGTTTCAAGCCCAGTGCACTGGGATATATCATCCACT

>NC_010794|3|3|824622-824925|CRISPRCasFinder
AGCCTAGGCCCAGTGCACTGGGATACATCATCAAC	CCAACCCGCCCTCCTGGGCAATTCCTGGGA
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	ATCTGGAGAAATCTGAAGCGTTAAGCAGGATAA
GTTTCAAGCCCAGTGCACTGGGATATATCATCAAC	TGAACAGGAAGAAATTACAATTCCCGCAGAAA
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	TGATGCTACAAGGATAATGACACCTCAATTTAG
GTTTCAAGCCCAGTGCACTGGGATATATCATCCACT

>NC_010794|3|2|824622-824914|CRT
AGCCTAGGCCCAGTGCACTGGGATA	CATCATCAACCCAACCCGCCCTCCTGGGCAATTCCTGGGA
GTTTCAAGCCCAGTGCACTGGGATA	CATCATCAACATCTGGAGAAATCTGAAGCGTTAAGCAGGATAA
GTTTCAAGCCCAGTGCACTGGGATA	TATCATCAACTGAACAGGAAGAAATTACAATTCCCGCAGAAA
GTTTCAAGCCCAGTGCACTGGGATA	CATCATCAACTGATGCTACAAGGATAATGACACCTCAATTTAG
GTTTCAAGCCCAGTGCACTGGGATA

>NC_010794|3|3|824687-824925|PILER-CR
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACA	TCTGGAGAAATCTGAAGCGTTAAGCAGGATAA
GTTTCAAGCCCAGTGCACTGGGATATATCATCAACT	GAACAGGAAGAAATTACAATTCCCGCAGAAA
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACT	GATGCTACAAGGATAATGACACCTCAATTTAG
GTTTCAAGCCCAGTGCACTGGGATATATCATCCACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010794.1|WP_148205123.1|816167_816419_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_148205126.1|829538_829868_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|274902
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl|CDD|376633
NC_010794.1|WP_187146971.1|829081_829243_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA	unknown	unknown	gnl|CDD|214920
NC_010794.1|WP_048810128.1|821033_821312_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase	unknown	unknown	gnl|CDD|223360
NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein	unknown	unknown	gnl|CDD|238978
NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein	unknown	unknown	gnl|CDD|224117
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010794.1|WP_012463203.1|822964_823381_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810135.1|830829_831093_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810136.1|831120_831330_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein	unknown	unknown	gnl|CDD|223510
NC_010794.1|WP_012463211.1|829963_830653_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_187146969.1|809846_810821_+|DUF4338-domain-containing-protein	unknown	unknown	gnl|CDD|372975
NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein	unknown	unknown	gnl|CDD|225224
NC_010794.1|WP_012463214.1|831379_831607_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	1.1e-134	445.5	0.1
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	3.2e-12	41.0	0.0
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.5e-13	45.5	0.0
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	9.4e-13	43.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.34711e-11
NC_010794.1|WP_187146969.1|809846_810821_+|DUF4338-domain-containing-protein	gnl|CDD|372975	pfam14236, DUF4338, Domain of unknown function (DUF4338). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 206 and 475 amino acids in length.	5.93262e-39
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl|CDD|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.66434e-136
NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA	gnl|CDD|214920	smart00933, NurA, NurA nuclease. This family includes NurA a nuclease exhibiting both single-stranded endonuclease activity and 5'-3' exonuclease activity on single-stranded and double-stranded DNA from the hyperthermophilic archaeon Sulfolobus acidocaldarius.	2.18288e-15
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.58793e-10
NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein	gnl|CDD|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	2.21247e-09
NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein	gnl|CDD|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.000203486
NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase	gnl|CDD|223360	COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism].	1.92708e-12
NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein	gnl|CDD|238978	cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.	1.0001e-05
NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein	gnl|CDD|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	0.00267955
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.25555e-11

Protein sequences

>NC_010794.1|WP_012463203.1|822964_823381_-|hypothetical-protein
MEEKLEETLRKLAAGQERLENKTEILAAAVEELSAKTERRFEDMASAVRELTRAVGELAERQANTDRMIGELTRVVRELSEHAARTDMRLERIEKRLEDIHLVATLISIDQRAGNSKLDLVVETIDDLISLSSCSRLS
>NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein
MEEKLEETLRKLAAGQERLENRTEDLGASVGELTRVVRELTGVVRELAERQANTDRMLGELTGAVRELAERQADTDRMIGELTRVVRELSEHVARTDMRPERIDGRLEKIDKRLEDVHLVATLISIDQRASNSKLDLVAKAIEEIDDVVLESKAKDQLPFSLKEDILDLKVLDKDFVCHIISAAEDKGVLTKAESNDVGKADIFAFGFDKKTGDLVCLAVEVSATIGKNDITMADRRSKLFAKAVRHFVENEPDKWEKMRKMVYPNHH
>NC_010794.1|WP_048810128.1|821033_821312_+|hypothetical-protein
MKEVKKNDDKNKTKDTVYKGKTAKNGKPVVTVTENGKTKFFPMYNNEFDLPPGGSFAWRYGGTAPWRLSYSILRHHTDEKQEKYGKLCLGFL
>NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase
MAKLIVTIDGTTASGKSTVVGEVAKITGFAYFSTSLLYRSVTQKLLDDCVNWRNKWAVIEACGNMKFVLKLKK
>NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein
MFLEARFKFFLDANLETRKSRRKLDGEANNVEKRDELSYLFKPKDAVMIDTTSFPVYKGASKIVSHLINCKDEELVIYPSALGLGYLGLAGLYRATLCKRQCGDGRIGGSGSDRADWLSEV
>NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein
MTYGISDLQILLEDPQTGKLFRGYPEKKLTRLFHDDFLKEQQQVEVIDWPPEDEELKKKEKEINEKIFSDIKENLFKMQDCHSLRPKRGTNGQLLIVLPKTTPLIAPLLSSGVPGSENSPSSETSKTKGKDRKIDPRMLTVLLLGTDRKNEYQEPVAFSRFFKQWLIRKGVKEENIHQENYLKDNENLEKESSEINPQVAERIRQSIWNFYKPNTNSQLFVCDTGGIPKVRELIKELAFLLAGDRVQILKKTERELVGPVQTPSPIDVVRVRRECLQQVRRGALLDASAIASAFSPKLNPIDSQAESWVKRLRLAAQLINGNPSTKERGFPAFNALLEHIKKASCLLVAIRVETALLTGHWLEAINGSLTFLDVAYRDAIKEWAERNSSKYSIKYNIEKDFIEFTESTPEYIKEYSTKFREIEKNENLETTPNGIKVRVGGIKYLNLWDDLFNKQELSDFKIQELSYLKDLFYNYSDKNRNLAQYRNINTHALLKQKEIEEAVRDFKKAKIWGEKVNAKLDPENPPVPGECFLGRDPIKKVIKKFLKNSVKPPGTLYRDLLEELEDSLINSPLSN
>NC_010794.1|WP_148205123.1|816167_816419_+|hypothetical-protein
MPKNYIRIEDLLLQGNSSVLFGKIGEEKRSGCHERKKASIFKLDDLQLISYFCKFALSFLHLIQWIFSFPTLWITSSDWDRSS
>NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein
MNVDQNKDIEQLIDNTERIGTIGSPSSTSELSIDILGTAVSKKLVGELACFRFSQDEKSHIALGQITEVQLKNIWLEDPTMRSLARQRGNVNPISGQQDTHLGEMTVSAVFSKDGYKFEPSMLGTVPATGTPIHLATDQVMNTLLAQHKDEIWYLGHVYGSKPKLPMWFKHFGSGPRGAGEAYHIGIFGKNGSGKSTLAAMMLVAYARHPEMAIFIIDPQGQFSKHAKGQTNTEGFQLGLNTLLRNFNKKVIIKSVKELILDRWDLFCEILIESRFFELLSISEGDYRRIAAERITDELKKKNIKLKDLYQPSSFDSAWKVLGDPNVQMQIYKTKESRERFQTLYKESDKNEFYNKYWKPVTELFNKDRENTMAIKDLIKLAFSVDGGFPATNNCRPVVIIDLYLSKEEANVSGLYWNDTIQALVIKRLLDEIIYSAERAYHNNKLLNTLVVFDEAQKFAPREGFNWASNKVIEKLERVRQQLLDAIRTTRKYGLGWMFISQTLSSLHKDIISQIRIFFFGFGLALGTEFMSLKEIAGGESNALKLYQSFRDPHCAFEVSSKQYSFMTVGPVSPLSFSGTPLFFTAFNKPEEFISENGLNRQFDRDKNASNELFLDFNVN
>NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA
MLSKSETIGDRLYDSFKEIRNRKLDYRQQLQNRNFLKLETEVGYPGIPTTCGIDGSYGVEKLLAADFAACAAVAVEGLIPPSEKKYWEKPHHRVFIHPEKHDPDTGVMIRSVMMEMEVELAAKAPHDVVFLDGSLTTPLIYLNQAVNRLFELEDKESETGAKLIEKFEGFLKDYKTILESSRTDKLWVSLPKYTSRRELGKIFNWPSHYDDRAMLTHVLSPGEFTVPVQLEKPKQPWHLKTPNNDGKLEKLKDEVISAVQRIHVMYYKPHPWTPVFRIEMSSSIATNSSRIAVLLQAIKFQSGTPGIIEPYPIYIADRIVKHLGKAIPAFRQIASRRMVELHDGDIGDIVFTMHGYRTESEK
>NC_010794.1|WP_187146969.1|809846_810821_+|DUF4338-domain-containing-protein
MKYISKVRNYCRNGCEINPEKISLELIEIRKKSFEETLFKWWNLAWWSIPYQRPYGRQMRFLLWDTAHDSPFGLISLQSPILKISVRDKFLDIPRENLDLWVNMSMQAQRVGSLPPYNELLGGKLVAITLTCNEIREAYKKKYKHSVTLLRNRKLEPDLLFITTTSAFGKSSLYNRLKYNGENVALSLGYTKGSGTFHIPEQLYLEILRYLSKKGYDVSRGFGHGPSRKLKLISLGLRCLKLPKFDFHGIKREFFIFPLVKNLKEVIHESENPIWVDRPFCKLVNYWKERWAIPRMERIQKWKYFNCSEFFDNIERQLKGMEDV
>NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2
MGVRQYGVAYDLSDNRERAMVERCISRYGQRLQKSLFSCVLDPKRYMQLQGELAGLRCASGNVVMAALADPVAIVQIGSVKPKAATEDWVFGHCSGLGELGSLPWKAFPSGPGHSG
>NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2
MGVRQYWVAYDLSDNRERAMVERCISRYGQRLQKSLFSCVLDPKRYMQLQGELAGLRCTSGSVVMAALADPVAIVQIGSVKSEVVTEDWVFGLFSGLGELGSLPWKAFPSGPGHSG
>NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1
MIQPLCVDRLYQLSWLEIDLVLRAHSPPRRAHPLAVLEALLKGVFESAHLDPSTVKQLWWWPGVKVEAMGWETGSRIPITVQLFGLGTSSIQAWIEQLYARFTERGQNFDLLKVSPWRVAKPPSPTKEPSPALALDFLTPVPLPHRPGTPRTALDGEGFLRLCQSRLRKLFGTEGQLPPPPELDTTSWQYWRTAHRSSSQRGNPMFLHGCIGPLRLFGPELPAWKPWLALFAAVGLGERLSFSHGRLELRSAEVVVPGQNDPAPLQLRRPFVLDVHLHGCRLSLSNANLVVETSADESIKLLPLLRISNIELHSACQVSTALLQACAELDIPVLLALPGRTPIHILGPSAEANRYRTLAAHHSAWQSLDEPGRVQLAARLISAKLAGMPTLCANVTARTTTSSWSGSREPASASFMPGNCPPCAAGKDGPADTTGDGSPNRSTNWEALKSVARTGKPRIRST
>NC_010794.1|WP_187146971.1|829081_829243_-|hypothetical-protein
MFIYPQANVAFLNCIPVKSTIQGLPAESTQPAKLDWNLLEKLEKHFIQPTKLE
>NC_010794.1|WP_148205126.1|829538_829868_-|hypothetical-protein
MAQNVSSPAAARVGLSWDWTASAHKRFIEPPSDRRLPSCVAMSVENELLTQLRFETINATPDLFDPAFNDSINSRLIADLAYMIQKKVLCMSTIPLRWTRLKDPGETAP
>NC_010794.1|WP_012463211.1|829963_830653_-|hypothetical-protein
MMIVFALVLYLMISSESHNWHRVTGLPIPPIPPGLIPPRWGQVNPYQWLGPNSEKIFKFPNGSVLVNPDLWLEPKPVGKPPGNVWWCIRPEWSSNVWSDEEYESAWQSSDAAVFKAGIKTERGWERWSMTCKDKNQDIESVWERFIDDVLGKIREKISEGKIRGGGYVYMGLLFGQRILNVGVNTCWVLIWDSTQAGHMRQAPYLRWAFPVLSIQEDEPIHEAEQAVEA
>NC_010794.1|WP_048810135.1|830829_831093_+|hypothetical-protein
MLTGIAVLSRLWPWVQDEREKRCEGIEEGSEAVQLSAFSMHPQEASGGELDEINGAEPCSNQFLDEIPGKEQGDLFEIARNNRISGL
>NC_010794.1|WP_048810136.1|831120_831330_+|hypothetical-protein
MNIWGSNGTNCNLQRILIPEIGLFMDILFFGFLANEPLLEKATGGNGLLCVVVAMGARHQNGEQGWIKL
>NC_010794.1|WP_012463214.1|831379_831607_-|hypothetical-protein
MPFYPRLLKRQAGAIESPREMLSTQLKDTFNDRDGNRLKLWNGQANADCKRQVHCQLVFPKIGPAIVKMLLKRYA
>NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MNSLPYGFLPIEVQKSICDVPMWRDGSSGEDRLSGEILLTLEALTPLLVGNQQYKINEKQSVLFPQMLEDGRVLIAGTSLKGMFRAALSSLLHAPMERVGDHRYTFRPNLGFGQKYQSRPAVISSVKGKDENAEIELKVLPDDTRVTFVRNSAIPKPDEKVGKLLQGYFPGIKFTPTRTSRCMVLEKSSEGGKNLDHYLFFYSGGIDGEGLLAKAFRPSNEIYRYVLVHTSDFNRADSQSLPSKVLKDYYETQEILADEKTGHLSPGHPLLNEIKDKVKEVKEAIQNHSELKEKQLIYIEIENLERKPGNPPFRILSMGHHFYYRWAYTSSVCYKNSIGENKELRPELGFHPQETFDKKGAPKQLTAARLFFGYSIDNKQKELSSMAKESYQRLAGRIAFNTAIEVTEGKSLEERFVEGGREIALHILGQPRPSAVEFYLKQVHLPNKLTTYGDLPDDPGGELAGRKYYRHQPDARTNMDLYKKTEEKDNSKERGTVVCYLSKPGTRFRATLRFDSLRPWELGAVLAVLDPGLLEKTFGLTPYSQGYAHKLGYGKPLGLGSVRIRLDAARWQENDRLEWKEARAGEEAWDRLLETSLKALKEKLQKTWQSNTAANLECWLKTKQWSTTGRASYPTLYGTIYRFHAKLRSWQAAARRGARVNFNDLLEGYT

Crispr_ID: NC_010794_4

• CRISPR_ID: NC_010794_4
• CRISPR_location: 825656-825895
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 3 spacers
• Cas_protein_info: cas2,cas1,csm3gr7

Consensus repeat of NC_010794_4

Consensus_repeat	Method
TGTTTCAAGCCCAGTGCACTGGGATATATCA	CRT
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	CRISPRCasFinder
GTTTCAAGCCCAGTGCACTGGGATATATCATCAACT	PILER-CR

spacers of NC_010794_4

>4.1|825687|37|NC_010794|CRT
CCAACTTCCTGAGCCAGCCGACGCTTTCGCTTCGTTT
>4.2|825755|37|NC_010794|CRT
CCAACCAAAGGCCTGGTAAAAGTAAAAGAAGTAGAAG
>4.3|825823|36|NC_010794|CRT
TCAACTAGAAAAGCTAAAGAAAAATGGGGAACAATT
>4.4|825692|33|NC_010794|CRISPRCasFinder
TTCCTGAGCCAGCCGACGCTTTCGCTTCGTTTT
>4.5|825760|33|NC_010794|CRISPRCasFinder
CAAAGGCCTGGTAAAAGTAAAAGAAGTAGAAGA
>4.6|825828|32|NC_010794|CRISPRCasFinder
TAGAAAAGCTAAAGAAAAATGGGGAACAATTT
>4.7|825761|32|NC_010794|PILER-CR
AAAGGCCTGGTAAAAGTAAAAGAAGTAGAAGA
>4.8|825829|31|NC_010794|PILER-CR
AGAAAAGCTAAAGAAAAATGGGGAACAATTT

CRISPR arrays and Neighbor proteins around NC_010794_4

CRISPR arrays

The CRISPR arrays of NC_010794_4

>merge|NC_010794|4|825656-825895|CRT,CRISPRCasFinder,PILER-CR
TAGCCTAGGCCCAGTGCACTGGGATATATCACCAACTTCCTGAGCCAGCCGACGCTTTCGCTTCGTTTTGTTTCAAGCCCAGTGCACTGGGATATATCACCAACCAAAGGCCTGGTAAAAGTAAAAGAAGTAGAAGAGTTTCAAGCCCAGTGCACTGGGATATATCATCAACTAGAAAAGCTAAAGAAAAATGGGGAACAATTTGTTTCAAGCCCAGTGCACTGGGATATATCATCAACT

>NC_010794|4|3|825656-825889|CRT
TAGCCTAGGCCCAGTGCACTGGGATATATCA	CCAACTTCCTGAGCCAGCCGACGCTTTCGCTTCGTTT
TGTTTCAAGCCCAGTGCACTGGGATATATCA	CCAACCAAAGGCCTGGTAAAAGTAAAAGAAGTAGAAG
AGTTTCAAGCCCAGTGCACTGGGATATATCA	TCAACTAGAAAAGCTAAAGAAAAATGGGGAACAATT
TGTTTCAAGCCCAGTGCACTGGGATATATCA

>NC_010794|4|4|825657-825895|CRISPRCasFinder
AGCCTAGGCCCAGTGCACTGGGATATATCACCAAC	TTCCTGAGCCAGCCGACGCTTTCGCTTCGTTTT
GTTTCAAGCCCAGTGCACTGGGATATATCACCAAC	CAAAGGCCTGGTAAAAGTAAAAGAAGTAGAAGA
GTTTCAAGCCCAGTGCACTGGGATATATCATCAAC	TAGAAAAGCTAAAGAAAAATGGGGAACAATTT
GTTTCAAGCCCAGTGCACTGGGATATATCATCAACT

>NC_010794|4|4|825725-825895|PILER-CR
GTTTCAAGCCCAGTGCACTGGGATATATCACCAACC	AAAGGCCTGGTAAAAGTAAAAGAAGTAGAAGA
GTTTCAAGCCCAGTGCACTGGGATATATCATCAACT	AGAAAAGCTAAAGAAAAATGGGGAACAATTT
GTTTCAAGCCCAGTGCACTGGGATATATCATCAACT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010794.1|WP_148205123.1|816167_816419_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_148205126.1|829538_829868_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|274902
NC_010794.1|WP_012463216.1|833816_834317_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_187146971.1|829081_829243_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA	unknown	unknown	gnl|CDD|214920
NC_010794.1|WP_048810128.1|821033_821312_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase	unknown	unknown	gnl|CDD|223360
NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein	unknown	unknown	gnl|CDD|238978
NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein	unknown	unknown	gnl|CDD|224117
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010794.1|WP_012463203.1|822964_823381_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810135.1|830829_831093_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810136.1|831120_831330_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein	unknown	unknown	gnl|CDD|223510
NC_010794.1|WP_012463211.1|829963_830653_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl|CDD|376633
NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein	unknown	unknown	gnl|CDD|225224
NC_010794.1|WP_012463214.1|831379_831607_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	1.1e-134	445.5	0.1
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	3.2e-12	41.0	0.0
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.5e-13	45.5	0.0
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	9.4e-13	43.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl|CDD|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.66434e-136
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.34711e-11
NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA	gnl|CDD|214920	smart00933, NurA, NurA nuclease. This family includes NurA a nuclease exhibiting both single-stranded endonuclease activity and 5'-3' exonuclease activity on single-stranded and double-stranded DNA from the hyperthermophilic archaeon Sulfolobus acidocaldarius.	2.18288e-15
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.58793e-10
NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein	gnl|CDD|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	2.21247e-09
NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein	gnl|CDD|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.000203486
NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase	gnl|CDD|223360	COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism].	1.92708e-12
NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein	gnl|CDD|238978	cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.	1.0001e-05
NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein	gnl|CDD|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	0.00267955
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.25555e-11

Protein sequences

>NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2
MGVRQYGVAYDLSDNRERAMVERCISRYGQRLQKSLFSCVLDPKRYMQLQGELAGLRCASGNVVMAALADPVAIVQIGSVKPKAATEDWVFGHCSGLGELGSLPWKAFPSGPGHSG
>NC_010794.1|WP_012463203.1|822964_823381_-|hypothetical-protein
MEEKLEETLRKLAAGQERLENKTEILAAAVEELSAKTERRFEDMASAVRELTRAVGELAERQANTDRMIGELTRVVRELSEHAARTDMRLERIEKRLEDIHLVATLISIDQRAGNSKLDLVVETIDDLISLSSCSRLS
>NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein
MEEKLEETLRKLAAGQERLENRTEDLGASVGELTRVVRELTGVVRELAERQANTDRMLGELTGAVRELAERQADTDRMIGELTRVVRELSEHVARTDMRPERIDGRLEKIDKRLEDVHLVATLISIDQRASNSKLDLVAKAIEEIDDVVLESKAKDQLPFSLKEDILDLKVLDKDFVCHIISAAEDKGVLTKAESNDVGKADIFAFGFDKKTGDLVCLAVEVSATIGKNDITMADRRSKLFAKAVRHFVENEPDKWEKMRKMVYPNHH
>NC_010794.1|WP_048810128.1|821033_821312_+|hypothetical-protein
MKEVKKNDDKNKTKDTVYKGKTAKNGKPVVTVTENGKTKFFPMYNNEFDLPPGGSFAWRYGGTAPWRLSYSILRHHTDEKQEKYGKLCLGFL
>NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase
MAKLIVTIDGTTASGKSTVVGEVAKITGFAYFSTSLLYRSVTQKLLDDCVNWRNKWAVIEACGNMKFVLKLKK
>NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein
MFLEARFKFFLDANLETRKSRRKLDGEANNVEKRDELSYLFKPKDAVMIDTTSFPVYKGASKIVSHLINCKDEELVIYPSALGLGYLGLAGLYRATLCKRQCGDGRIGGSGSDRADWLSEV
>NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein
MTYGISDLQILLEDPQTGKLFRGYPEKKLTRLFHDDFLKEQQQVEVIDWPPEDEELKKKEKEINEKIFSDIKENLFKMQDCHSLRPKRGTNGQLLIVLPKTTPLIAPLLSSGVPGSENSPSSETSKTKGKDRKIDPRMLTVLLLGTDRKNEYQEPVAFSRFFKQWLIRKGVKEENIHQENYLKDNENLEKESSEINPQVAERIRQSIWNFYKPNTNSQLFVCDTGGIPKVRELIKELAFLLAGDRVQILKKTERELVGPVQTPSPIDVVRVRRECLQQVRRGALLDASAIASAFSPKLNPIDSQAESWVKRLRLAAQLINGNPSTKERGFPAFNALLEHIKKASCLLVAIRVETALLTGHWLEAINGSLTFLDVAYRDAIKEWAERNSSKYSIKYNIEKDFIEFTESTPEYIKEYSTKFREIEKNENLETTPNGIKVRVGGIKYLNLWDDLFNKQELSDFKIQELSYLKDLFYNYSDKNRNLAQYRNINTHALLKQKEIEEAVRDFKKAKIWGEKVNAKLDPENPPVPGECFLGRDPIKKVIKKFLKNSVKPPGTLYRDLLEELEDSLINSPLSN
>NC_010794.1|WP_148205123.1|816167_816419_+|hypothetical-protein
MPKNYIRIEDLLLQGNSSVLFGKIGEEKRSGCHERKKASIFKLDDLQLISYFCKFALSFLHLIQWIFSFPTLWITSSDWDRSS
>NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein
MNVDQNKDIEQLIDNTERIGTIGSPSSTSELSIDILGTAVSKKLVGELACFRFSQDEKSHIALGQITEVQLKNIWLEDPTMRSLARQRGNVNPISGQQDTHLGEMTVSAVFSKDGYKFEPSMLGTVPATGTPIHLATDQVMNTLLAQHKDEIWYLGHVYGSKPKLPMWFKHFGSGPRGAGEAYHIGIFGKNGSGKSTLAAMMLVAYARHPEMAIFIIDPQGQFSKHAKGQTNTEGFQLGLNTLLRNFNKKVIIKSVKELILDRWDLFCEILIESRFFELLSISEGDYRRIAAERITDELKKKNIKLKDLYQPSSFDSAWKVLGDPNVQMQIYKTKESRERFQTLYKESDKNEFYNKYWKPVTELFNKDRENTMAIKDLIKLAFSVDGGFPATNNCRPVVIIDLYLSKEEANVSGLYWNDTIQALVIKRLLDEIIYSAERAYHNNKLLNTLVVFDEAQKFAPREGFNWASNKVIEKLERVRQQLLDAIRTTRKYGLGWMFISQTLSSLHKDIISQIRIFFFGFGLALGTEFMSLKEIAGGESNALKLYQSFRDPHCAFEVSSKQYSFMTVGPVSPLSFSGTPLFFTAFNKPEEFISENGLNRQFDRDKNASNELFLDFNVN
>NC_010794.1|WP_148205304.1|810879_811968_+|DNA-double-strand-break-repair-nuclease-NurA
MLSKSETIGDRLYDSFKEIRNRKLDYRQQLQNRNFLKLETEVGYPGIPTTCGIDGSYGVEKLLAADFAACAAVAVEGLIPPSEKKYWEKPHHRVFIHPEKHDPDTGVMIRSVMMEMEVELAAKAPHDVVFLDGSLTTPLIYLNQAVNRLFELEDKESETGAKLIEKFEGFLKDYKTILESSRTDKLWVSLPKYTSRRELGKIFNWPSHYDDRAMLTHVLSPGEFTVPVQLEKPKQPWHLKTPNNDGKLEKLKDEVISAVQRIHVMYYKPHPWTPVFRIEMSSSIATNSSRIAVLLQAIKFQSGTPGIIEPYPIYIADRIVKHLGKAIPAFRQIASRRMVELHDGDIGDIVFTMHGYRTESEK
>NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2
MGVRQYWVAYDLSDNRERAMVERCISRYGQRLQKSLFSCVLDPKRYMQLQGELAGLRCTSGSVVMAALADPVAIVQIGSVKSEVVTEDWVFGLFSGLGELGSLPWKAFPSGPGHSG
>NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1
MIQPLCVDRLYQLSWLEIDLVLRAHSPPRRAHPLAVLEALLKGVFESAHLDPSTVKQLWWWPGVKVEAMGWETGSRIPITVQLFGLGTSSIQAWIEQLYARFTERGQNFDLLKVSPWRVAKPPSPTKEPSPALALDFLTPVPLPHRPGTPRTALDGEGFLRLCQSRLRKLFGTEGQLPPPPELDTTSWQYWRTAHRSSSQRGNPMFLHGCIGPLRLFGPELPAWKPWLALFAAVGLGERLSFSHGRLELRSAEVVVPGQNDPAPLQLRRPFVLDVHLHGCRLSLSNANLVVETSADESIKLLPLLRISNIELHSACQVSTALLQACAELDIPVLLALPGRTPIHILGPSAEANRYRTLAAHHSAWQSLDEPGRVQLAARLISAKLAGMPTLCANVTARTTTSSWSGSREPASASFMPGNCPPCAAGKDGPADTTGDGSPNRSTNWEALKSVARTGKPRIRST
>NC_010794.1|WP_187146971.1|829081_829243_-|hypothetical-protein
MFIYPQANVAFLNCIPVKSTIQGLPAESTQPAKLDWNLLEKLEKHFIQPTKLE
>NC_010794.1|WP_148205126.1|829538_829868_-|hypothetical-protein
MAQNVSSPAAARVGLSWDWTASAHKRFIEPPSDRRLPSCVAMSVENELLTQLRFETINATPDLFDPAFNDSINSRLIADLAYMIQKKVLCMSTIPLRWTRLKDPGETAP
>NC_010794.1|WP_012463211.1|829963_830653_-|hypothetical-protein
MMIVFALVLYLMISSESHNWHRVTGLPIPPIPPGLIPPRWGQVNPYQWLGPNSEKIFKFPNGSVLVNPDLWLEPKPVGKPPGNVWWCIRPEWSSNVWSDEEYESAWQSSDAAVFKAGIKTERGWERWSMTCKDKNQDIESVWERFIDDVLGKIREKISEGKIRGGGYVYMGLLFGQRILNVGVNTCWVLIWDSTQAGHMRQAPYLRWAFPVLSIQEDEPIHEAEQAVEA
>NC_010794.1|WP_048810135.1|830829_831093_+|hypothetical-protein
MLTGIAVLSRLWPWVQDEREKRCEGIEEGSEAVQLSAFSMHPQEASGGELDEINGAEPCSNQFLDEIPGKEQGDLFEIARNNRISGL
>NC_010794.1|WP_048810136.1|831120_831330_+|hypothetical-protein
MNIWGSNGTNCNLQRILIPEIGLFMDILFFGFLANEPLLEKATGGNGLLCVVVAMGARHQNGEQGWIKL
>NC_010794.1|WP_012463214.1|831379_831607_-|hypothetical-protein
MPFYPRLLKRQAGAIESPREMLSTQLKDTFNDRDGNRLKLWNGQANADCKRQVHCQLVFPKIGPAIVKMLLKRYA
>NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MNSLPYGFLPIEVQKSICDVPMWRDGSSGEDRLSGEILLTLEALTPLLVGNQQYKINEKQSVLFPQMLEDGRVLIAGTSLKGMFRAALSSLLHAPMERVGDHRYTFRPNLGFGQKYQSRPAVISSVKGKDENAEIELKVLPDDTRVTFVRNSAIPKPDEKVGKLLQGYFPGIKFTPTRTSRCMVLEKSSEGGKNLDHYLFFYSGGIDGEGLLAKAFRPSNEIYRYVLVHTSDFNRADSQSLPSKVLKDYYETQEILADEKTGHLSPGHPLLNEIKDKVKEVKEAIQNHSELKEKQLIYIEIENLERKPGNPPFRILSMGHHFYYRWAYTSSVCYKNSIGENKELRPELGFHPQETFDKKGAPKQLTAARLFFGYSIDNKQKELSSMAKESYQRLAGRIAFNTAIEVTEGKSLEERFVEGGREIALHILGQPRPSAVEFYLKQVHLPNKLTTYGDLPDDPGGELAGRKYYRHQPDARTNMDLYKKTEEKDNSKERGTVVCYLSKPGTRFRATLRFDSLRPWELGAVLAVLDPGLLEKTFGLTPYSQGYAHKLGYGKPLGLGSVRIRLDAARWQENDRLEWKEARAGEEAWDRLLETSLKALKEKLQKTWQSNTAANLECWLKTKQWSTTGRASYPTLYGTIYRFHAKLRSWQAAARRGARVNFNDLLEGYT
>NC_010794.1|WP_012463216.1|833816_834317_-|hypothetical-protein
MNGQRLYLLRQDLAGRLTIGLLRQHISGNDPSWISLEPRAWLLECDGSFLWGRLRWLYPLVRRLPDGLDDLPLLAATLYEPNRWHHFYDAQPLSRLPAQKITWSLLPLDSPENVQQIDGLECKTTEVYCWQDIGRFGLSPDHLLREPLSIKHFFLKGRRVAWTLDL

Crispr_ID: NC_010794_5

• CRISPR_ID: NC_010794_5
• CRISPR_location: 826621-827125
• CRISPR_type: TypeIII
• Repeat_type: NA
• Spacer_info: 7 spacers
• Cas_protein_info: cas2,cas1,csm3gr7

Consensus repeat of NC_010794_5

Consensus_repeat	Method
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	CRISPRCasFinder
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACT	CRT
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	PILER-CR

spacers of NC_010794_5

>5.1|826656|32|NC_010794|CRISPRCasFinder
TCGAGCAACACTCCATTGGTTCGCCTCCGTGG
>5.2|826723|33|NC_010794|CRISPRCasFinder,PILER-CR
TTCTTGCTCCGGATGAAGAGACCACTTTTTCGG
>5.3|826791|31|NC_010794|CRISPRCasFinder,PILER-CR
TTTTATCCCTGAGGAAGTGGACTCCGTGGTA
>5.4|826857|33|NC_010794|CRISPRCasFinder,PILER-CR
AAATATATGACGATGAATGCAAATGCAAATGGG
>5.5|826925|31|NC_010794|CRISPRCasFinder,PILER-CR
TTTTATAGCCTAGTCCCAACCGGAGCTCTCC
>5.6|826991|33|NC_010794|CRISPRCasFinder,PILER-CR
AAATATATGACGATGAATGCAAATGCAAATGGG
>5.7|827059|31|NC_010794|CRISPRCasFinder,PILER-CR
TTTTATAGCCTAGTCCCAACCGGAGCTCTCC
>5.8|826657|31|NC_010794|CRT
CGAGCAACACTCCATTGGTTCGCCTCCGTGG
>5.9|826724|32|NC_010794|CRT
TCTTGCTCCGGATGAAGAGACCACTTTTTCGG
>5.10|826792|30|NC_010794|CRT
TTTATCCCTGAGGAAGTGGACTCCGTGGTA
>5.11|826858|32|NC_010794|CRT
AATATATGACGATGAATGCAAATGCAAATGGG
>5.12|826926|30|NC_010794|CRT
TTTATAGCCTAGTCCCAACCGGAGCTCTCC
>5.13|826992|32|NC_010794|CRT
AATATATGACGATGAATGCAAATGCAAATGGG
>5.14|827060|30|NC_010794|CRT
TTTATAGCCTAGTCCCAACCGGAGCTCTCC

CRISPR arrays and Neighbor proteins around NC_010794_5

CRISPR arrays

The CRISPR arrays of NC_010794_5

>merge|NC_010794|5|826621-827125|CRISPRCasFinder,CRT,PILER-CR
AGCCTAGGCTCAGTGCACTGGGATATATTATCAACTCGAGCAACACTCCATTGGTTCGCCTCCGTGGGTTTCAAGCCCAGTGCACTGGGATATATCATCAACTTCTTGCTCCGGATGAAGAGACCACTTTTTCGGGTTTCAAGCCCAGTGCACTGGGATACATCATCAACTTTTATCCCTGAGGAAGTGGACTCCGTGGTAGTTTCAAGCCCAGTGCACTGGGATACATCATCAACAAATATATGACGATGAATGCAAATGCAAATGGGGTTTCAAGCCCAGTGCACTGGGATACATCATCAACTTTTATAGCCTAGTCCCAACCGGAGCTCTCCGTTTCAAGCCCAGTGCACTGGGATACATCATCAACAAATATATGACGATGAATGCAAATGCAAATGGGGTTTCAAGCCCAGTGCACTGGGATACATCATCAACTTTTATAGCCTAGTCCCAACCGGAGCTCTCCGTTTCAAGCCCAGTGCACTGGGATACATCATCAACT

>NC_010794|5|5|826621-827124|CRISPRCasFinder
AGCCTAGGCTCAGTGCACTGGGATATATTATCAAC	TCGAGCAACACTCCATTGGTTCGCCTCCGTGG
GTTTCAAGCCCAGTGCACTGGGATATATCATCAAC	TTCTTGCTCCGGATGAAGAGACCACTTTTTCGG
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	TTTTATCCCTGAGGAAGTGGACTCCGTGGTA
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	AAATATATGACGATGAATGCAAATGCAAATGGG
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	TTTTATAGCCTAGTCCCAACCGGAGCTCTCC
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	AAATATATGACGATGAATGCAAATGCAAATGGG
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	TTTTATAGCCTAGTCCCAACCGGAGCTCTCC
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC

>NC_010794|5|4|826621-827125|CRT
AGCCTAGGCTCAGTGCACTGGGATATATTATCAACT	CGAGCAACACTCCATTGGTTCGCCTCCGTGG
GTTTCAAGCCCAGTGCACTGGGATATATCATCAACT	TCTTGCTCCGGATGAAGAGACCACTTTTTCGG
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACT	TTTATCCCTGAGGAAGTGGACTCCGTGGTA
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACA	AATATATGACGATGAATGCAAATGCAAATGGG
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACT	TTTATAGCCTAGTCCCAACCGGAGCTCTCC
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACA	AATATATGACGATGAATGCAAATGCAAATGGG
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACT	TTTATAGCCTAGTCCCAACCGGAGCTCTCC
GTTTCAAGCCCAGTGCACTGGGATACATCATCAACT

>NC_010794|5|5|826688-827124|PILER-CR
GTTTCAAGCCCAGTGCACTGGGATATATCATCAAC	TTCTTGCTCCGGATGAAGAGACCACTTTTTCGG
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	TTTTATCCCTGAGGAAGTGGACTCCGTGGTA
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	AAATATATGACGATGAATGCAAATGCAAATGGG
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	TTTTATAGCCTAGTCCCAACCGGAGCTCTCC
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	AAATATATGACGATGAATGCAAATGCAAATGGG
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC	TTTTATAGCCTAGTCCCAACCGGAGCTCTCC
GTTTCAAGCCCAGTGCACTGGGATACATCATCAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010794.1|WP_148205123.1|816167_816419_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_148205126.1|829538_829868_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl|CDD|274902
NC_010794.1|WP_012463216.1|833816_834317_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_187146971.1|829081_829243_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810128.1|821033_821312_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase	unknown	unknown	gnl|CDD|223360
NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein	unknown	unknown	gnl|CDD|238978
NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein	unknown	unknown	gnl|CDD|224117
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010794.1|WP_048810139.1|834313_835765_-|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl|CDD|187857
NC_010794.1|WP_012463203.1|822964_823381_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810135.1|830829_831093_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810136.1|831120_831330_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein	unknown	unknown	gnl|CDD|223510
NC_010794.1|WP_012463211.1|829963_830653_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl|CDD|376633
NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein	unknown	unknown	gnl|CDD|225224
NC_010794.1|WP_012463214.1|831379_831607_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	1.1e-134	445.5	0.1
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	3.2e-12	41.0	0.0
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	1.5e-13	45.5	0.0
NC_010794.1|WP_048810139.1|834313_835765_-|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	2.8e-26	87.8	0.0
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	9.4e-13	43.0	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl|CDD|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	1.66434e-136
NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1	gnl|CDD|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.34711e-11
NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.58793e-10
NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein	gnl|CDD|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	2.21247e-09
NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein	gnl|CDD|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	0.00267955
NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase	gnl|CDD|223360	COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism].	1.92708e-12
NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein	gnl|CDD|238978	cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.	1.0001e-05
NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein	gnl|CDD|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.000203486
NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.25555e-11
NC_010794.1|WP_048810139.1|834313_835765_-|hypothetical-protein	gnl|CDD|187857	cd09726, RAMP_I_III, CRISPR/Cas system-associated RAMP superfamily protein. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily proteins.	1.34617e-12

Protein sequences

>NC_010794.1|WP_012463206.1|826231_826582_-|CRISPR-associated-endonuclease-Cas2
MGVRQYWVAYDLSDNRERAMVERCISRYGQRLQKSLFSCVLDPKRYMQLQGELAGLRCTSGSVVMAALADPVAIVQIGSVKSEVVTEDWVFGLFSGLGELGSLPWKAFPSGPGHSG
>NC_010794.1|WP_012463205.1|825261_825612_-|CRISPR-associated-endonuclease-Cas2
MGVRQYGVAYDLSDNRERAMVERCISRYGQRLQKSLFSCVLDPKRYMQLQGELAGLRCASGNVVMAALADPVAIVQIGSVKPKAATEDWVFGHCSGLGELGSLPWKAFPSGPGHSG
>NC_010794.1|WP_012463203.1|822964_823381_-|hypothetical-protein
MEEKLEETLRKLAAGQERLENKTEILAAAVEELSAKTERRFEDMASAVRELTRAVGELAERQANTDRMIGELTRVVRELSEHAARTDMRLERIEKRLEDIHLVATLISIDQRAGNSKLDLVVETIDDLISLSSCSRLS
>NC_010794.1|WP_148205125.1|821677_822484_-|hypothetical-protein
MEEKLEETLRKLAAGQERLENRTEDLGASVGELTRVVRELTGVVRELAERQANTDRMLGELTGAVRELAERQADTDRMIGELTRVVRELSEHVARTDMRPERIDGRLEKIDKRLEDVHLVATLISIDQRASNSKLDLVAKAIEEIDDVVLESKAKDQLPFSLKEDILDLKVLDKDFVCHIISAAEDKGVLTKAESNDVGKADIFAFGFDKKTGDLVCLAVEVSATIGKNDITMADRRSKLFAKAVRHFVENEPDKWEKMRKMVYPNHH
>NC_010794.1|WP_048810128.1|821033_821312_+|hypothetical-protein
MKEVKKNDDKNKTKDTVYKGKTAKNGKPVVTVTENGKTKFFPMYNNEFDLPPGGSFAWRYGGTAPWRLSYSILRHHTDEKQEKYGKLCLGFL
>NC_010794.1|WP_187146970.1|820770_820992_-|(d)CMP-kinase
MAKLIVTIDGTTASGKSTVVGEVAKITGFAYFSTSLLYRSVTQKLLDDCVNWRNKWAVIEACGNMKFVLKLKK
>NC_010794.1|WP_048810126.1|820206_820572_-|hypothetical-protein
MFLEARFKFFLDANLETRKSRRKLDGEANNVEKRDELSYLFKPKDAVMIDTTSFPVYKGASKIVSHLINCKDEELVIYPSALGLGYLGLAGLYRATLCKRQCGDGRIGGSGSDRADWLSEV
>NC_010794.1|WP_148205124.1|816542_818270_-|hypothetical-protein
MTYGISDLQILLEDPQTGKLFRGYPEKKLTRLFHDDFLKEQQQVEVIDWPPEDEELKKKEKEINEKIFSDIKENLFKMQDCHSLRPKRGTNGQLLIVLPKTTPLIAPLLSSGVPGSENSPSSETSKTKGKDRKIDPRMLTVLLLGTDRKNEYQEPVAFSRFFKQWLIRKGVKEENIHQENYLKDNENLEKESSEINPQVAERIRQSIWNFYKPNTNSQLFVCDTGGIPKVRELIKELAFLLAGDRVQILKKTERELVGPVQTPSPIDVVRVRRECLQQVRRGALLDASAIASAFSPKLNPIDSQAESWVKRLRLAAQLINGNPSTKERGFPAFNALLEHIKKASCLLVAIRVETALLTGHWLEAINGSLTFLDVAYRDAIKEWAERNSSKYSIKYNIEKDFIEFTESTPEYIKEYSTKFREIEKNENLETTPNGIKVRVGGIKYLNLWDDLFNKQELSDFKIQELSYLKDLFYNYSDKNRNLAQYRNINTHALLKQKEIEEAVRDFKKAKIWGEKVNAKLDPENPPVPGECFLGRDPIKKVIKKFLKNSVKPPGTLYRDLLEELEDSLINSPLSN
>NC_010794.1|WP_148205123.1|816167_816419_+|hypothetical-protein
MPKNYIRIEDLLLQGNSSVLFGKIGEEKRSGCHERKKASIFKLDDLQLISYFCKFALSFLHLIQWIFSFPTLWITSSDWDRSS
>NC_010794.1|WP_012463189.1|811971_813834_+|ATP-binding-protein
MNVDQNKDIEQLIDNTERIGTIGSPSSTSELSIDILGTAVSKKLVGELACFRFSQDEKSHIALGQITEVQLKNIWLEDPTMRSLARQRGNVNPISGQQDTHLGEMTVSAVFSKDGYKFEPSMLGTVPATGTPIHLATDQVMNTLLAQHKDEIWYLGHVYGSKPKLPMWFKHFGSGPRGAGEAYHIGIFGKNGSGKSTLAAMMLVAYARHPEMAIFIIDPQGQFSKHAKGQTNTEGFQLGLNTLLRNFNKKVIIKSVKELILDRWDLFCEILIESRFFELLSISEGDYRRIAAERITDELKKKNIKLKDLYQPSSFDSAWKVLGDPNVQMQIYKTKESRERFQTLYKESDKNEFYNKYWKPVTELFNKDRENTMAIKDLIKLAFSVDGGFPATNNCRPVVIIDLYLSKEEANVSGLYWNDTIQALVIKRLLDEIIYSAERAYHNNKLLNTLVVFDEAQKFAPREGFNWASNKVIEKLERVRQQLLDAIRTTRKYGLGWMFISQTLSSLHKDIISQIRIFFFGFGLALGTEFMSLKEIAGGESNALKLYQSFRDPHCAFEVSSKQYSFMTVGPVSPLSFSGTPLFFTAFNKPEEFISENGLNRQFDRDKNASNELFLDFNVN
>NC_010794.1|WP_048810133.1|827696_829085_-|CRISPR-associated-endonuclease-Cas1
MIQPLCVDRLYQLSWLEIDLVLRAHSPPRRAHPLAVLEALLKGVFESAHLDPSTVKQLWWWPGVKVEAMGWETGSRIPITVQLFGLGTSSIQAWIEQLYARFTERGQNFDLLKVSPWRVAKPPSPTKEPSPALALDFLTPVPLPHRPGTPRTALDGEGFLRLCQSRLRKLFGTEGQLPPPPELDTTSWQYWRTAHRSSSQRGNPMFLHGCIGPLRLFGPELPAWKPWLALFAAVGLGERLSFSHGRLELRSAEVVVPGQNDPAPLQLRRPFVLDVHLHGCRLSLSNANLVVETSADESIKLLPLLRISNIELHSACQVSTALLQACAELDIPVLLALPGRTPIHILGPSAEANRYRTLAAHHSAWQSLDEPGRVQLAARLISAKLAGMPTLCANVTARTTTSSWSGSREPASASFMPGNCPPCAAGKDGPADTTGDGSPNRSTNWEALKSVARTGKPRIRST
>NC_010794.1|WP_187146971.1|829081_829243_-|hypothetical-protein
MFIYPQANVAFLNCIPVKSTIQGLPAESTQPAKLDWNLLEKLEKHFIQPTKLE
>NC_010794.1|WP_148205126.1|829538_829868_-|hypothetical-protein
MAQNVSSPAAARVGLSWDWTASAHKRFIEPPSDRRLPSCVAMSVENELLTQLRFETINATPDLFDPAFNDSINSRLIADLAYMIQKKVLCMSTIPLRWTRLKDPGETAP
>NC_010794.1|WP_012463211.1|829963_830653_-|hypothetical-protein
MMIVFALVLYLMISSESHNWHRVTGLPIPPIPPGLIPPRWGQVNPYQWLGPNSEKIFKFPNGSVLVNPDLWLEPKPVGKPPGNVWWCIRPEWSSNVWSDEEYESAWQSSDAAVFKAGIKTERGWERWSMTCKDKNQDIESVWERFIDDVLGKIREKISEGKIRGGGYVYMGLLFGQRILNVGVNTCWVLIWDSTQAGHMRQAPYLRWAFPVLSIQEDEPIHEAEQAVEA
>NC_010794.1|WP_048810135.1|830829_831093_+|hypothetical-protein
MLTGIAVLSRLWPWVQDEREKRCEGIEEGSEAVQLSAFSMHPQEASGGELDEINGAEPCSNQFLDEIPGKEQGDLFEIARNNRISGL
>NC_010794.1|WP_048810136.1|831120_831330_+|hypothetical-protein
MNIWGSNGTNCNLQRILIPEIGLFMDILFFGFLANEPLLEKATGGNGLLCVVVAMGARHQNGEQGWIKL
>NC_010794.1|WP_012463214.1|831379_831607_-|hypothetical-protein
MPFYPRLLKRQAGAIESPREMLSTQLKDTFNDRDGNRLKLWNGQANADCKRQVHCQLVFPKIGPAIVKMLLKRYA
>NC_010794.1|WP_012463215.1|831788_833801_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MNSLPYGFLPIEVQKSICDVPMWRDGSSGEDRLSGEILLTLEALTPLLVGNQQYKINEKQSVLFPQMLEDGRVLIAGTSLKGMFRAALSSLLHAPMERVGDHRYTFRPNLGFGQKYQSRPAVISSVKGKDENAEIELKVLPDDTRVTFVRNSAIPKPDEKVGKLLQGYFPGIKFTPTRTSRCMVLEKSSEGGKNLDHYLFFYSGGIDGEGLLAKAFRPSNEIYRYVLVHTSDFNRADSQSLPSKVLKDYYETQEILADEKTGHLSPGHPLLNEIKDKVKEVKEAIQNHSELKEKQLIYIEIENLERKPGNPPFRILSMGHHFYYRWAYTSSVCYKNSIGENKELRPELGFHPQETFDKKGAPKQLTAARLFFGYSIDNKQKELSSMAKESYQRLAGRIAFNTAIEVTEGKSLEERFVEGGREIALHILGQPRPSAVEFYLKQVHLPNKLTTYGDLPDDPGGELAGRKYYRHQPDARTNMDLYKKTEEKDNSKERGTVVCYLSKPGTRFRATLRFDSLRPWELGAVLAVLDPGLLEKTFGLTPYSQGYAHKLGYGKPLGLGSVRIRLDAARWQENDRLEWKEARAGEEAWDRLLETSLKALKEKLQKTWQSNTAANLECWLKTKQWSTTGRASYPTLYGTIYRFHAKLRSWQAAARRGARVNFNDLLEGYT
>NC_010794.1|WP_012463216.1|833816_834317_-|hypothetical-protein
MNGQRLYLLRQDLAGRLTIGLLRQHISGNDPSWISLEPRAWLLECDGSFLWGRLRWLYPLVRRLPDGLDDLPLLAATLYEPNRWHHFYDAQPLSRLPAQKITWSLLPLDSPENVQQIDGLECKTTEVYCWQDIGRFGLSPDHLLREPLSIKHFFLKGRRVAWTLDL
>NC_010794.1|WP_048810139.1|834313_835765_-|hypothetical-protein
MKPYRTLVFAHLVQDSALSVGGNNPHGFANLPLARDGLGRPILRGSTLAGCFIAQARALFPKLPSAITLETPTGKGDQKATASAWRFAHAHLLQMHAQTVFFQHVSIDRRTLAARENCLFSIEALPEGTSWDFLLEIAPSDECDFAQLEGMAAEVLATWSKKGGARIGRGSRHGYGWAHLEKIAIVRLDSRHVRLWPNAFATGQRGEALRQFFQDNNIPLLDLDSFLRTTQPVSKQAPRGYVVFSGTIEVGERADDFGKGYGLDTLSIGGHARLQLQANEFFNRVIPPIPPSEIHFKKEEEIHFKKEDFDPDFVITAMPTPGGGLVPYIPAASIRGVWRAGLERYCQALQEGNAGKELVEKLFGTTQQAGSLSISDGILDNEDWKLLWQQQLSIDEFSGGVYGASKFDRLCIAHGRFRWRAEITAAKQQEAEKLADPLVKMLQCLGDGHLPLGGGSWRGHGHIRWTLDRDEDSTNTRIIPKTP

Crispr_ID: NC_010794_6

• CRISPR_ID: NC_010794_6
• CRISPR_location: 1909760-1909847
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_010794_6

Consensus_repeat	Method
GTTTTTAGGAAAAAAAGAAAGAA	CRISPRCasFinder

spacers of NC_010794_6

>6.1|1909783|42|NC_010794|CRISPRCasFinder
AGGCACACTTTCCCAGGGGAGATTTCCACGCGCGCTTCGCAA

CRISPR arrays and Neighbor proteins around NC_010794_6

CRISPR arrays

The CRISPR arrays of NC_010794_6

>merge|NC_010794|6|1909760-1909847|CRISPRCasFinder
GTTTTTAGGAAAAAAAGAAAGAAAGGCACACTTTCCCAGGGGAGATTTCCACGCGCGCTTCGCAAGTTTTTAGGAAAACAAGAAAGAA

>NC_010794|6|6|1909760-1909847|CRISPRCasFinder
GTTTTTAGGAAAAAAAGAAAGAA	AGGCACACTTTCCCAGGGGAGATTTCCACGCGCGCTTCGCAA
GTTTTTAGGAAAACAAGAAAGAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_010794.1|WP_187146935.1|1905250_1905439_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012464398.1|1918553_1919420_-|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|379276
NC_010794.1|WP_148205229.1|1909898_1910198_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810318.1|1899727_1901164_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_148205227.1|1904153_1905068_+|carbohydrate-kinase	unknown	unknown	gnl|CDD|238920
NC_010794.1|WP_048810324.1|1921689_1922397_-|DUF707-domain-containing-protein	unknown	unknown	gnl|CDD|368342
NC_010794.1|WP_012464378.1|1901173_1901755_+|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_048810319.1|1903103_1903970_-|NAD(+)/NADH-kinase	unknown	unknown	gnl|CDD|223139
NC_010794.1|WP_012464386.1|1907567_1908251_-|hypothetical-protein	unknown	unknown	gnl|CDD|180466
NC_010794.1|WP_012464395.1|1913804_1915358_-|glycosyltransferase	unknown	unknown	gnl|CDD|274425
NC_010794.1|WP_012464380.1|1902593_1903049_-|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl|CDD|334031
NC_010794.1|WP_012464401.1|1919942_1921697_-|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|132997
NC_010794.1|WP_012464387.1|1908427_1909681_-|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|366154
NC_010794.1|WP_012464384.1|1905428_1906469_-|naringenin-chalcone-synthase	unknown	unknown	gnl|CDD|238427
NC_010794.1|WP_048810321.1|1911873_1912077_-|hypothetical-protein	unknown	unknown	unknown
NC_010794.1|WP_012464385.1|1906551_1907571_-|dehydrogenase	unknown	unknown	gnl|CDD|223717
NC_010794.1|WP_048810325.1|1922393_1925843_-|glycosyltransferase	unknown	unknown	gnl|CDD|226081
NC_010794.1|WP_012464397.1|1916219_1918355_-|filamentous-hemagglutinin-N-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|273865
NC_010794.1|WP_048810326.1|1925938_1927564_-|methyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|379312
NC_010794.1|WP_012464392.1|1912513_1913467_-|sulfotransferase-family-protein	unknown	unknown	gnl|CDD|226081

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_010794.1|WP_012464398.1|1918553_1919420_-|class-I-SAM-dependent-methyltransferase	gnl|CDD|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.55169e-16
NC_010794.1|WP_012464401.1|1919942_1921697_-|glycosyltransferase-family-2-protein	gnl|CDD|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	2.56182e-28
NC_010794.1|WP_148205227.1|1904153_1905068_+|carbohydrate-kinase	gnl|CDD|238920	cd01945, ribokinase_group_B, Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .	2.43871e-67
NC_010794.1|WP_048810324.1|1921689_1922397_-|DUF707-domain-containing-protein	gnl|CDD|368342	pfam05212, DUF707, Protein of unknown function (DUF707). This family consists of several uncharacterized proteins from Arabidopsis thaliana.	7.25974e-12
NC_010794.1|WP_048810319.1|1903103_1903970_-|NAD(+)/NADH-kinase	gnl|CDD|223139	COG0061, nadF, NAD kinase [Coenzyme metabolism].	5.95538e-70
NC_010794.1|WP_012464386.1|1907567_1908251_-|hypothetical-protein	gnl|CDD|180466	PRK06202, PRK06202, hypothetical protein; Provisional.	2.48512e-06
NC_010794.1|WP_012464395.1|1913804_1915358_-|glycosyltransferase	gnl|CDD|274425	TIGR03087, stp1, sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.	1.41236e-26
NC_010794.1|WP_012464380.1|1902593_1903049_-|PTS-sugar-transporter-subunit-IIA	gnl|CDD|334031	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.	6.71505e-19
NC_010794.1|WP_012464387.1|1908427_1909681_-|glycosyltransferase-family-2-protein	gnl|CDD|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	9.72931e-28
NC_010794.1|WP_012464384.1|1905428_1906469_-|naringenin-chalcone-synthase	gnl|CDD|238427	cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs. PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.	5.71726e-53
NC_010794.1|WP_012464392.1|1912513_1913467_-|sulfotransferase-family-protein	gnl|CDD|226081	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown].	2.90199e-40
NC_010794.1|WP_012464385.1|1906551_1907571_-|dehydrogenase	gnl|CDD|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	1.15802e-14
NC_010794.1|WP_048810325.1|1922393_1925843_-|glycosyltransferase	gnl|CDD|226081	COG3551, COG3551, Uncharacterized protein conserved in bacteria [Function unknown].	1.11619e-43
NC_010794.1|WP_012464397.1|1916219_1918355_-|filamentous-hemagglutinin-N-terminal-domain-containing-protein	gnl|CDD|273865	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain. This model represents a conserved domain found near the N-terminus of a number of large, repetitive bacterial proteins, including many proteins of over 2500 amino acids. Members generally have a signal sequence, then an intervening region, then the region described by this model. Following this region, proteins typically have regions rich in repeats but may show no homology between the repeats of one member and the repeats of another. A number of the members of this family have been designated adhesins, filamentous haemagglutinins, heme/hemopexin-binding protein, etc.	2.52987e-05
NC_010794.1|WP_048810326.1|1925938_1927564_-|methyltransferase-domain-containing-protein	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.87815e-11

Protein sequences

>NC_010794.1|WP_012464387.1|1908427_1909681_-|glycosyltransferase-family-2-protein
MPDRPFLSVIIPTFNRWAYLEKVLRALAEQDLQKDFFELIVVDDGSRDETPREMATFSGLQNLRYVRKENSGPADAKNLGIYMAKGKVVLFLDDDDIPARSLLSTHLATHQQNPDPSVAVLGYTELAEELKTDPLLRYVTTVGYQYCCYPLFEDGSLLDWQAFWGGRSSVKRSFLLEHDGLFNPIFKFHEDIELGLRLSSHGLKVLFNKKARSILVRNPGFDGICKRELVKGKYHYLLSYLYDHPQLRKYTRNWEKKWRILSFFHEQGYESVKKLHESIQWRIKEGLELDGATETTLFSAYKRVFESFYYKGMSEGPQLVEELGKKGYLVACRRKGKVLFMCRDSPLALAGARKRKQGHPFAGKSGGQAGAEKIFIQLGSYWKEPISKARGLFSGKKRLFPPGLFKGIKNLFLFLNK
>NC_010794.1|WP_012464386.1|1907567_1908251_-|hypothetical-protein
MERRLEEVEYLDILPPDSPEAKKGREGLKKLNFIMGNFSWFKRKLGPVAGSFGGIVAVLEIGAGDGSLGSYLYREPLLKGKLRITGLDRIPRPGCWPKEWDWIKSDLFEALDGALLDRQDFKGILANMVLHHFSPGQLGVLGKWIKRVNPSFLFFCEPLRSRLSLIELFLLRLAGLNEVTFHDGWLSIKSGFRDEELVSFLKLEERDWYCNISSNWMGAYRLEATAR
>NC_010794.1|WP_012464385.1|1906551_1907571_-|dehydrogenase
MKPITIIGGGLAGLSLGLCLRRFNLPVAIYEAGDYPLKKVCGEFLSGLPGRVVQKLGIEALLERFPKAREAVFFVGEKKRFLLKFPSPVYLAPRAELDTQLAILYRDRGGALYTHSLCRLDSSPGEGIVVAWGKKKIAGDWIGLKAHLQGIKLRYDLEMYANGHGYLGLCRSGRETVNLCGFFKKKKISASTRKDLLAGYLLESNFSLAYRYFEKSQFLEESFAAIPSFRLGFHREKEPFVRIGDSFATVPPFVGNGMAMAMESGAAASEDLLLYAQGKLSWLKTVSSVHRKLRRRFFRRLYLGLWIHPLLMKENSPLLPLLSQEKVANTLYRLTRSNA
>NC_010794.1|WP_012464384.1|1905428_1906469_-|naringenin-chalcone-synthase
MFLQSIFSLVPERGYKQSECWEIFSRSPVAQALREPSLQLVQKILLGNSWIDKRHFAVEPIEMLFDLPAESLNRKFEELAPKLASLSLREILEMSHLKPSELDALFVCTCTGYLCPGLSSHIAERVGLRPDSFLIDIVGHGCGAALPTLRAVKSFLSENPGCYAAAVAVELSSTAFYVDDDPGTLVSLCIFADGCCSTLWHSSKRGLGWRFKDFFSLHIPQDREKLRFENSQGKLRNKLHRSVPVLAAEAVAGLYRDFIAKGGSPAQRLIVHPGGKEVLIELQKRFPESRFEESAEILRLYGNMSSPSVLFAFQKGIESQPEEKEILLFSFGAGFSCYGCRVSRED
>NC_010794.1|WP_187146935.1|1905250_1905439_-|hypothetical-protein
MKISLLGLFHGPFSSIGHQKRDGQAGKDDALDKQLGFYFQENKPPLEHFLSAWSLLLGESKD
>NC_010794.1|WP_148205227.1|1904153_1905068_+|carbohydrate-kinase
MKQVEVLAVGHSCYDLSFFVEKDPHSDEKTMASDLVLCGGGPAANAAVAVSRLGGSAAFCGYVGCDLFGELIHREFRDEGVDTALLVKKMYPTPVACCLVKPDGQRAVVNYRKRTPPLSPAEVDFSFYHPQVLLFDGHEPAVSLEFIKFAKARGIVTVLDGGSLHEGTLLLAPQVDYVVASEKFTLELTTKNDPQAAFEEASKVYPRFIVTLGEKGLLWSCRGQKGMMKSLPIIPVDTNGAGDVFHGAFCLGLARGMDWDSLLLFATVSAGLSCTRKGARTSFPKKEELEAKLKEVKLEDLLSF
>NC_010794.1|WP_048810319.1|1903103_1903970_-|NAD(+)/NADH-kinase
MTLRVGLFVNKEKRGAHELLVELLEYFKKYGVSFFLEESTARLVGREGLSLSRLSQEVDLILAAGGDGTIIRIAHEIFPSQVPILGVNTGSLGFLTAVGREEILPELPKILTGRFRKSPRMVLKAVGSAYGKDFEIPCSLNDIVLFRGAYSHMTMIDVFAQGKLVTEYQADGVVVSTPTGSTAYALSTGGPIVVPESKVFTLNPICPHTLTNRSLVFAEEVVLRFSIPLGGGPVRLEYDGVAYGDLHPGDWIQIEARSERVVLGFLKERDFFEILRKKLRWSGTAVEE
>NC_010794.1|WP_012464380.1|1902593_1903049_-|PTS-sugar-transporter-subunit-IIA
MNLTDVLTQDRVLFNLTANDRFEAITKVAQLLSNSPKIQSFAAFLDALLEAERAGLTWFEQEVAFPHIRSELVKELILAAGFFSPGVFFRENAPLVQLIFVIGAPKKISTTDIVVVGSLARIVSKNKNRLLNAKNAQKFISLLSEYEKQLQ
>NC_010794.1|WP_012464378.1|1901173_1901755_+|hypothetical-protein
MRKTAWLISCLLFIGLFAQAQTPESEELDKAIEQAQKQLEKQQGATPTDRQTENRSQSSGPEYSPKQGRLVSAQDFAGYIKKHKAQHLWVYGHFKVIQVKKNRQLVAKPVIKGFIPLISSIALPKTHFVFLNPQNLKNFGRLSPGDSFYISPRHPALVIRIISKNKMETLAKALLSSQPKNHLLSSKSPPLSD
>NC_010794.1|WP_048810318.1|1899727_1901164_+|hypothetical-protein
MHNREKNNSLSFQLFKFLFFLYVSWFFPCELLTVRKMGKDYANPKRFLVSLTLLLILSWINKTADHKNIGIMLIFCGLLSLIYLFEALVLYYEEEKKKILRNPLSWGIPRFGFPGNEWFWYLFQPLMILLFSLLSSLFCPTLFFYFLVSAVFLWIFRFLSFRFYKEAETEPPWTDDFPSEEEEEEEVMPGSTEIIQGTEGSTPLKLRKLNPQFVSLAIIGLLASCSLIFYEKAFFFSRIPLQDSLARVLAREEEKLSSSMPEGWTFKTALSKEEDYFTLSHLQEKYHAQPPSFLQQLWTYWKEQKAEVVSGRFYPKAIKPLWAPFAGIMIQWVPVEEKQDQGPDTELWTYLETPSSLYNKLSPLFPAQAAPVVTFGKELKAYLFDVTPVGAKTVFHAVIPFSFTLNIAGCPVSQTLPDYYAQNEYQLQGQKIKALIIQRQRELLAELKTAPLTKEKLEEIKKEAALLKTKLAEIEGKR
>NC_010794.1|WP_148205229.1|1909898_1910198_-|hypothetical-protein
MILTLKSLAWDSWAFYGVPPALRKGSQLVESVLFRPAWASGCIICPGPIKEGMNSRALSRSTKVLLLVYLSQRDLFLGFAGLSGGFDLLLLLEKEKNWI
>NC_010794.1|WP_048810321.1|1911873_1912077_-|hypothetical-protein
MTYRIESDFVLTSDWLPAHVFTQHYDSISIAIATAIEGVDDPEEQEVRVICVETGEVVWRSTEEQYD
>NC_010794.1|WP_012464392.1|1912513_1913467_-|sulfotransferase-family-protein
MEHREKTGEKRKLVIVLGMHSSGTSVLSRSLMTLGLSLGQSLLDPVPYNPTGLWEDKDIVAINQEILAASGSSWDSFAPPSLFLKDEKMVSLLGRAADLIEQKLKEKNFAFKDPRTIRLLPFWHAVFEKLDISPSYILAVRNPLAVGYSLFRRNGFPLVKSFSLWLSHNVFPWPLYAPHLKAVIDYDQFLDHPEKELQRIAELFSLVYDEEAACALKRSFLKQELRHARFTDRELERHQAAFYPLVESWKLFKAMACSPIPREAKVQMDSLSKSFSAFQELFSLIDSYNQRKPKKSLVRFIIPKKLRGKLTILTFCL
>NC_010794.1|WP_012464395.1|1913804_1915358_-|glycosyltransferase
MRIQRGNCFYVVEEPRSIFFLPKGRRVRIRGFFIDAMGKAAKQITVEVKKESYWAKKTRRPDVLLKYFKGNPAVDEDCGFELVLKLSRGLKRIDLYAELQQGQKMRLGFFYAFVSKTEIEDWYLHAPQKTEHWYLHSPKKAAIMINDSLLIPDKKGADFRAFQILKMILEKGWEVYFATFLSRFEIPLGEGKWEEELKRYEKLLLDLGIKAIFYGESELEEFLSNFGSQFSLAYVFHELVAYRFLPLIRTYAINARVIYDTVDLAFVRLRREALTTGNDQLKKEARLSEKRDKSNFRGVDIVVAVTEEEKELIKGFVPERQVEVIPNIHEIHRPKNSWESRQGLLFLGYFGHRPNVDALRYFLSEIWRKIQGEIPGCRFDIVGSFLKENVPMELLNYPGVNPVGYVAELADCFEKVRVFVAPLRYGAGMKGKIGMAMASGLPVVTTSIGAEGMRLENGKNAFVCDDPSEFARQTVRLYKDKELWEKLSRASLEHVERYFSKEALKDTLERLFSYPFS
>NC_010794.1|WP_012464397.1|1916219_1918355_-|filamentous-hemagglutinin-N-terminal-domain-containing-protein
MHKKFLKKLRKWIFASLFLGFSALYSQKLLAFVPPPLPPPPAPNQLPGHGQVITGAATLNPPGNTLQVESQFTSIMWGGPSYNLNPNQPAGFNVGAQAHFGIVKNFPGPSVAALLNVDVSGNPSQVYGNITVAGDVIFFLANGSGIIVGPSGTINAPAGIGLFGYSINPSNFGGSVSIAKDSPGSFVTVMNGATLRSEKPGAMILIAAPQSVNIAALKGEPGDGGIVAKGGVSLVAGYALSGYNGYGFTVPSNGAFSVPASLNIHGSTDEQPFVISTALSNGNIWITGGSVVLPPTGAPGFGSLVWSTTLVNDATVAFSGPLSIANRQYSGSLYNYGSIVSFDEQPIVINVNGSIVNYGIINGGELNEDADQNVTLQAWQGGVANFGTINGHDTIVIAATNPSGTGTFPKGGVFSNGTISFSAEDTPTTLIFRSATGPGYLGGTVNYASQMGITNAFLGSGFSPGFPFELATNLTAQNVSFNGGSLVGGGILSVQSIDLTLSGNVNHVVSTNPLLNGFQLANGPFPSTNITINADGTGPQFINIAVSGNAVVNSGNSSTFMQQVMVNGVQGLTLPVPNAGGNLLLNVSGNLTVNPGSPSQFAMSRDILSFPGFVFPGGIAMKAGGSLTVNASLDNGYSPSAGTNYQGIFLSSPFLSVGYPFVTNGNTRVTVSSPVNEGVYAVSPISSSNPTVYTVVLNPSALVVGPFPWSP
>NC_010794.1|WP_012464398.1|1918553_1919420_-|class-I-SAM-dependent-methyltransferase
MKQGVKKSNDQEQAVSRAIEIEDWYPYGASLEPRWEWNKRVHPLLDDLLGSRLQTFEGYLRAWKKFVPALLSINSFLPLENLSAFWHNRWFTSLDGVALFGMIAQEKPGLYLEMGSGYSTLFAYAAKKAHSPTTKIVTIDPAPRIEVSPYIDEAIQSTLQDSPPSLFERLQAGDILFIDGSHRVLQGSDVTVFFLEVLPVVKPGVLVHLHDIFWPVDYPKAWSKRYYSEQYLLAALFLYAQEKFDILFASHYISMQPGLVQVLNELWTAPQLQGLKPLGGSFWFRKKA
>NC_010794.1|WP_012464401.1|1919942_1921697_-|glycosyltransferase-family-2-protein
MPDRPHPLLSVIIPTFNRSFYLRAVLDALVQQDLDSSLFELIVVDDGSSDDTPEVAQAFSSGLALRYVRRENAGQASARNLGIYLSRGEILVFLDDDDIPSRSLLSEHLKIHEQFPDPRVAVLAYTELSESLKTDPLLAYVTTEGGQYFSYPALSEGGIYDWTTFWSGRISVKRSFLIEGGVFNPIFRFLEDVELGWRLSKLGLKVVFNKNARSVLIRNPGFEGICQRERNKGKYHFLLGYLYRDERIKSYARIENWREKWRRYAPFSENLYVSVKKLHDCLALRIKEGQSIDEHRPLLYEAYRKLLECFFYKGMSEGPQLVLDLGKKGYLVESQGKNLVISFPRGVRPLVSSVSLDKESFSYPLLEEIFRFSPKRFTVSPLGELAARAEIEKDLAEYLWEGIPQGSKTIEVDGVVATLVFLNKKMDHTALFSKAEGEEILQEYLKSKNREVDSLKILRGPTEERLAELKETGFDAAVMHGKKGFPYPFVEFLFLSKLLKAKGLLVVNDTFGYGCSLLCQYLLSLEKEWKLEKTFSGSMVFRKLKNLSQEERQSIKAFDLSGEEKTFTLVGPYWRETFIGEQDS
>NC_010794.1|WP_048810324.1|1921689_1922397_-|DUF707-domain-containing-protein
MNKPKGKIKVFGVYYLNKPSFIRQLVQAWNASKEWAVEQSWVALGEGEPELELQAYTLKTGQFWKFAVANEVIQKDSPFDYLFICDDDVVLPHGFLDRYMEIVLERGFDLSQPARSHDSFIDHPFTERIDGIQARLTRYVEIGPVVCFSRRAWELVSPFPPFPPSGWGFDFVWPLAMEKAGYKMGIVDSLPCVHNLRVPVLNYAQSNPWKDMEYFLSVTPHLKKEEAFRILEVYA
>NC_010794.1|WP_048810325.1|1922393_1925843_-|glycosyltransferase
MEHGEKTKEKRRIVIVLGMHRSGTSALSRSLMALGLSLGQSLLDPQPDNPMGFWEDRQIVAINEEVLAASGSSWDSFAPPDLSLKEAKMVSLLRKAEELIEQKLKEKNFAFKDPRTIRLLPFWHTVFEKKEISPSYLLVIRNPLAVGYSLFRRNQFPLVKSFCLWLSHNVLPWPLYVPYLKAVVDYDRFLDQPEKELQRIAGVFSLPYDDQAVLVLKRNFLKQEYRHARFTDMDLERHQAAFYPLVESWKLFKAMATFSPIPREAKAQMDSLSKSFSAFQQLLSLFDFYNESKKKELAELYDREKKLGEELEEKKLEIRELKEKLKKNHFVNRANKEFIAKIFRDLAYSSPGKKKIWNRGKKEVDPEKEMAVKFMESGLFDPGYYWSCYPDVKKAGADPLLHYVRHGWKEGKNPNPYFDSAYYLEKNPEVKAAGVNPLLHFIENGWKEGRNPHPDFDLDLYLETQPEVRLSGVNPLKHFLESVKSLEGGTAPGQGTPERGQYLKILRSSLFDRAYYLGQYPDVQEAGIDPLLHYIRHGWKEGRNPNPYFDSAYYLEKNPEVKAAGVNPLLHFIENGWKEGRNPHPDFDLDLYLETQPELRLSGVNPLKHFLESVKSLEGGTAPGQGTPERGQYLKILRSSLFDKAYYLGQYPDVQEAGIDPLLHYIRHGWKEGRNPNPYFNSAYYLEKNPDVKAAGVNPLLHFIENGWKEGRNPHPDFDLRSYLERYPDVKQAQVNPLWHYLHYGQKENRITKGKSTPPWEISPSMAPRKKALVFNDYLLVPDRRGGDFRTFQIIKIIRELGWEVNLAVLNDRENHGKVLQEDNLDIEFKHYEGILFEAGVKEILLGEEKIKTFLSRQGQEISVAYVFSPTVAYHFIPLIRSYAVNAKLIYDPVDLAFIRLERKAALSKDPLVIEEAKQAKIIDTTNFVASDAIVAITEEEKEKILELSLQSRVEVVPNIHEVHKPKSPWENRKSILFLGYFGHEPNVDGLSYFILEMWESIREHIPGCSFEIVGSFLKEYVPEELLNRPGIQPVGYVPDLVPCFEKARVFVAPLRFGAGMKGKIGMAMASGLPVVTTSIGAEGMKLENGKNAFICDDKEEFIQAVVRLYKEKELWERLSQAALEHVESRYSKAVVKETLKKLFSFHCL
>NC_010794.1|WP_048810326.1|1925938_1927564_-|methyltransferase-domain-containing-protein
MRLKDIFIDLLGQRINGKKAINKGNQEDISQLKAGDLHYKAYVGPPDQYDFMGATQFRLLCALGLRAHHRLLDFGCGSLRAGKLFIPYLDKGNYFGIEPASWLIKEALRKELGKDIIRIKQPHFNHNRDFKTDVFGVDFDYILAQSIFSHAGRDLILKALKNFARSLKSQGLIAATFIEGEEDFEAEGWIYPGIVSYRPATIERCIEEAALCFVRLPWYHPRQSWYLLAKDKSKLPSREQLAYLTGAVYHEPFFEESLKKDLLGFYSYRALDKAYLELDKTHLLRTRNLRLIPTEENRRGGKYAYGEWAHVIGIFQTLIYQNLDKKEENLILDMGCGTGLLAIASEPFLGEKGAYYGVDVRLEDIEFCSRHYDSQKFHFIDLKAKNPHYAPLGEEKPKLPFEDDFFDLVTALSVWTHLSEEDSLFYFSEISRVMKRKARAIVTFFLLDESYEKTLPLRTKETGKYHMTEKNRWVFNKKAYGSGYWFCPEWAEVPEEAIGLKEEALQLLLKESSLKICRYYPGNWKEIPGVFFQDVVIFEKE

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010794_3	3.3|824790|32|NC_010794|CRISPRCasFinder	824790-824821	32	MN694127	Marine virus AFVG_250M874, complete genome	1499-1530	3	0.906
NC_010794_3	3.10|824791|31|NC_010794|PILER-CR	824791-824821	31	MN694127	Marine virus AFVG_250M874, complete genome	1500-1530	3	0.903
NC_010794_1	1.4|819707|29|NC_010794|PILER-CR	819707-819735	29	NZ_CP040995	Klebsiella pneumoniae strain FDAARGOS_775 plasmid unnamed3, complete sequence	77720-77748	6	0.793
NC_010794_1	1.4|819707|29|NC_010794|PILER-CR	819707-819735	29	NZ_CP032836	Klebsiella pneumoniae strain INF237 plasmid pINF237_03, complete sequence	43665-43693	6	0.793
NC_010794_2	2.2|823839|29|NC_010794|PILER-CR,CRT	823839-823867	29	MN693907	Marine virus AFVG_250M314, complete genome	20341-20369	6	0.793
NC_010794_2	2.2|823839|29|NC_010794|PILER-CR,CRT	823839-823867	29	MN694421	Marine virus AFVG_250M313, complete genome	15857-15885	6	0.793
NC_010794_1	1.4|819707|29|NC_010794|PILER-CR	819707-819735	29	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	659849-659877	7	0.759
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MH542234	Staphylococcus phage Terranova, complete genome	91535-91566	7	0.781
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	NC_041928	Staphylococcus phage phiIBB-SEP1, complete genome	54676-54707	7	0.781
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MF417868	Uncultured Caudovirales phage clone 7AX_1, partial genome	91360-91391	7	0.781
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	56091-56122	7	0.781
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MH321490	Staphylococcus phage Quidividi, complete genome	90735-90766	7	0.781
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MH321491	Staphylococcus phage Twillingate, complete genome	92038-92069	7	0.781
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	NZ_CP022021	Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence	3675-3706	7	0.781
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	NC_022045	Listeria monocytogenes strain N1-011A plasmid, complete sequence	146506-146537	7	0.781
NC_010794_4	4.8|825829|31|NC_010794|PILER-CR	825829-825859	31	NZ_CP017256	Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence	71930-71960	7	0.774
NC_010794_4	4.8|825829|31|NC_010794|PILER-CR	825829-825859	31	MN694246	Marine virus AFVG_250M226, complete genome	23205-23235	7	0.774
NC_010794_5	5.8|826657|31|NC_010794|CRT	826657-826687	31	KJ081346	Bacillus phage BCP8-2, complete genome	145584-145614	7	0.774
NC_010794_5	5.8|826657|31|NC_010794|CRT	826657-826687	31	NC_027352	Bacillus phage JBP901, complete genome	108771-108801	7	0.774
NC_010794_5	5.8|826657|31|NC_010794|CRT	826657-826687	31	MH638312	Bacillus phage Kioshi, complete genome	77503-77533	7	0.774
NC_010794_5	5.8|826657|31|NC_010794|CRT	826657-826687	31	NC_042140	Bacillus virus BM15, complete genome	76956-76986	7	0.774
NC_010794_5	5.8|826657|31|NC_010794|CRT	826657-826687	31	MG602477	Bacillus phage BCP01, complete genome	69834-69864	7	0.774
NC_010794_5	5.8|826657|31|NC_010794|CRT	826657-826687	31	KX495186	Bacillus phage PK16, complete genome	108484-108514	7	0.774
NC_010794_5	5.8|826657|31|NC_010794|CRT	826657-826687	31	MH638309	Bacillus phage Hobo, complete genome	76956-76986	7	0.774
NC_010794_5	5.8|826657|31|NC_010794|CRT	826657-826687	31	NC_031056	Bacillus phage Deep Blue, complete genome	95240-95270	7	0.774
NC_010794_5	5.8|826657|31|NC_010794|CRT	826657-826687	31	MN364664	Xanthomonas phage Xoo-sp15, complete genome	48666-48696	7	0.774
NC_010794_5	5.8|826657|31|NC_010794|CRT	826657-826687	31	KJ451625	Bacillus phage Bcp1, complete genome	77942-77972	7	0.774
NC_010794_2	2.5|823839|31|NC_010794|CRISPRCasFinder	823839-823869	31	NZ_CP015180	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB71, complete sequence	8663-8693	8	0.742
NC_010794_2	2.5|823839|31|NC_010794|CRISPRCasFinder	823839-823869	31	NZ_CP020746	Bacillus mycoides strain Gnyt1 plasmid unnamed3, complete sequence	95997-96027	8	0.742
NC_010794_2	2.5|823839|31|NC_010794|CRISPRCasFinder	823839-823869	31	NC_020240	Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pAW63, complete sequence	8663-8693	8	0.742
NC_010794_2	2.5|823839|31|NC_010794|CRISPRCasFinder	823839-823869	31	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	129163-129193	8	0.742
NC_010794_2	2.5|823839|31|NC_010794|CRISPRCasFinder	823839-823869	31	NZ_CP031066	Bacillus sp. SH8-8 plasmid pl193, complete sequence	171120-171150	8	0.742
NC_010794_2	2.5|823839|31|NC_010794|CRISPRCasFinder	823839-823869	31	NZ_CP031063	Bacillus sp. AR4-2 plasmid pl192, complete sequence	170950-170980	8	0.742
NC_010794_2	2.5|823839|31|NC_010794|CRISPRCasFinder	823839-823869	31	NZ_CP018742	Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence	204445-204475	8	0.742
NC_010794_3	3.1|824657|30|NC_010794|CRISPRCasFinder	824657-824686	30	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	324643-324672	8	0.733
NC_010794_3	3.1|824657|30|NC_010794|CRISPRCasFinder	824657-824686	30	NC_013930	Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence	14592-14621	8	0.733
NC_010794_4	4.5|825760|33|NC_010794|CRISPRCasFinder	825760-825792	33	MH542234	Staphylococcus phage Terranova, complete genome	91534-91566	8	0.758
NC_010794_4	4.5|825760|33|NC_010794|CRISPRCasFinder	825760-825792	33	NC_041928	Staphylococcus phage phiIBB-SEP1, complete genome	54675-54707	8	0.758
NC_010794_4	4.5|825760|33|NC_010794|CRISPRCasFinder	825760-825792	33	MF417868	Uncultured Caudovirales phage clone 7AX_1, partial genome	91360-91392	8	0.758
NC_010794_4	4.5|825760|33|NC_010794|CRISPRCasFinder	825760-825792	33	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	56090-56122	8	0.758
NC_010794_4	4.5|825760|33|NC_010794|CRISPRCasFinder	825760-825792	33	MH321490	Staphylococcus phage Quidividi, complete genome	90734-90766	8	0.758
NC_010794_4	4.5|825760|33|NC_010794|CRISPRCasFinder	825760-825792	33	MH321491	Staphylococcus phage Twillingate, complete genome	92037-92069	8	0.758
NC_010794_4	4.5|825760|33|NC_010794|CRISPRCasFinder	825760-825792	33	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	559552-559584	8	0.758
NC_010794_4	4.6|825828|32|NC_010794|CRISPRCasFinder	825828-825859	32	MH595538	Vibrio phage BONAISHI, complete genome	25190-25221	8	0.75
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	559553-559584	8	0.75
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MT375526	Pelagibacter phage Himinglaeva EXVC011P, complete genome	11595-11626	8	0.75
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MN693441	Marine virus AFVG_25M481, complete genome	51734-51765	8	0.75
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MT375531	Pelagibacter phage Unn EXVC019P, complete genome	34197-34228	8	0.75
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MT375520	Pelagibacter phage Bylgja EXVC0, complete genome	11595-11626	8	0.75
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	KT001915	Citrobacter phage Merlin, complete genome	105105-105136	8	0.75
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MT375527	Pelagibacter phage Hroenn EXVC0, complete genome	3927-3958	8	0.75
NC_010794_4	4.8|825829|31|NC_010794|PILER-CR	825829-825859	31	NZ_CP032528	Bacillus megaterium NCT-2 plasmid pNCT2_1, complete sequence	9588-9618	8	0.742
NC_010794_4	4.8|825829|31|NC_010794|PILER-CR	825829-825859	31	NZ_CP032531	Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence	83522-83552	8	0.742
NC_010794_4	4.8|825829|31|NC_010794|PILER-CR	825829-825859	31	MH595538	Vibrio phage BONAISHI, complete genome	25191-25221	8	0.742
NC_010794_5	5.1|826656|32|NC_010794|CRISPRCasFinder	826656-826687	32	KJ081346	Bacillus phage BCP8-2, complete genome	145583-145614	8	0.75
NC_010794_5	5.1|826656|32|NC_010794|CRISPRCasFinder	826656-826687	32	NC_027352	Bacillus phage JBP901, complete genome	108770-108801	8	0.75
NC_010794_5	5.1|826656|32|NC_010794|CRISPRCasFinder	826656-826687	32	MH638312	Bacillus phage Kioshi, complete genome	77503-77534	8	0.75
NC_010794_5	5.1|826656|32|NC_010794|CRISPRCasFinder	826656-826687	32	NC_042140	Bacillus virus BM15, complete genome	76956-76987	8	0.75
NC_010794_5	5.1|826656|32|NC_010794|CRISPRCasFinder	826656-826687	32	MG602477	Bacillus phage BCP01, complete genome	69834-69865	8	0.75
NC_010794_5	5.1|826656|32|NC_010794|CRISPRCasFinder	826656-826687	32	KX495186	Bacillus phage PK16, complete genome	108483-108514	8	0.75
NC_010794_5	5.1|826656|32|NC_010794|CRISPRCasFinder	826656-826687	32	MH638309	Bacillus phage Hobo, complete genome	76956-76987	8	0.75
NC_010794_5	5.1|826656|32|NC_010794|CRISPRCasFinder	826656-826687	32	NC_031056	Bacillus phage Deep Blue, complete genome	95239-95270	8	0.75
NC_010794_5	5.1|826656|32|NC_010794|CRISPRCasFinder	826656-826687	32	MN364664	Xanthomonas phage Xoo-sp15, complete genome	48665-48696	8	0.75
NC_010794_5	5.1|826656|32|NC_010794|CRISPRCasFinder	826656-826687	32	KJ451625	Bacillus phage Bcp1, complete genome	77942-77973	8	0.75
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	AP013753	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C63A-MedDCM-OCT-S44-C48, *** SEQUENCING IN PROGRESS ***	23477-23508	9	0.719
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MH356730	Staphylococcus phage VB-SauS-SA2, complete genome	427-458	9	0.719
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	AP013471	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C63A-MedDCM-OCT-S41-C57	2410-2441	9	0.719
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MN855978	Bacteriophage sp. isolate 105, complete genome	9153-9184	9	0.719
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	AP013752	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C63A-MedDCM-OCT-S30-C46, *** SEQUENCING IN PROGRESS ***	27786-27817	9	0.719
NC_010794_5	5.8|826657|31|NC_010794|CRT	826657-826687	31	JX094431	Bacillus cereus bacteriophage vB_BceM_Bc431v3, complete genome	108498-108528	9	0.71
NC_010794_1	1.2|819698|33|NC_010794|CRISPRCasFinder	819698-819730	33	NZ_CP040995	Klebsiella pneumoniae strain FDAARGOS_775 plasmid unnamed3, complete sequence	77720-77752	10	0.697
NC_010794_1	1.2|819698|33|NC_010794|CRISPRCasFinder	819698-819730	33	NZ_CP032836	Klebsiella pneumoniae strain INF237 plasmid pINF237_03, complete sequence	43661-43693	10	0.697
NC_010794_3	3.3|824790|32|NC_010794|CRISPRCasFinder	824790-824821	32	KY971610	Pseudomonas phage PspYZU05, complete genome	126855-126886	10	0.688
NC_010794_3	3.10|824791|31|NC_010794|PILER-CR	824791-824821	31	KY971610	Pseudomonas phage PspYZU05, complete genome	126856-126886	10	0.677
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	NZ_CP043616	Lactobacillus buchneri strain MGB0786 plasmid unnamed2, complete sequence	13808-13839	10	0.688
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	NZ_CP048057	Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p1, complete sequence	16317-16348	10	0.688
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	MK448730	Streptococcus phage Javan311, complete genome	16100-16131	10	0.688
NC_010794_4	4.7|825761|32|NC_010794|PILER-CR	825761-825792	32	KM983327	Clostridium phage phiCT453A, complete genome	6407-6438	10	0.688
NC_010794_5	5.1|826656|32|NC_010794|CRISPRCasFinder	826656-826687	32	JX094431	Bacillus cereus bacteriophage vB_BceM_Bc431v3, complete genome	108497-108528	10	0.688

1. spacer 3.3|824790|32|NC_010794|CRISPRCasFinder matches to MN694127 (Marine virus AFVG_250M874, complete genome) position: , mismatch: 3, identity: 0.906

tgaaca-ggaagaaattacaattcccgcagaaa	CRISPR spacer
-gaacatgaaaaaaattacaattcccgcagaaa	Protospacer
 ***** *.**.*********************

2. spacer 3.10|824791|31|NC_010794|PILER-CR matches to MN694127 (Marine virus AFVG_250M874, complete genome) position: , mismatch: 3, identity: 0.903

gaaca-ggaagaaattacaattcccgcagaaa	CRISPR spacer
-aacatgaaaaaaattacaattcccgcagaaa	Protospacer
 **** *.**.*********************

3. spacer 1.4|819707|29|NC_010794|PILER-CR matches to NZ_CP040995 (Klebsiella pneumoniae strain FDAARGOS_775 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.793

tggagagtaataaagacggataagtttgg	CRISPR spacer
tggagagtaataaaaaaggataagggtaa	Protospacer
**************.* *******  *..

4. spacer 1.4|819707|29|NC_010794|PILER-CR matches to NZ_CP032836 (Klebsiella pneumoniae strain INF237 plasmid pINF237_03, complete sequence) position: , mismatch: 6, identity: 0.793

tggagagtaataaagacggataagtttgg	CRISPR spacer
tggagagtaataaaaaaggataagggtaa	Protospacer
**************.* *******  *..

5. spacer 2.2|823839|29|NC_010794|PILER-CR,CRT matches to MN693907 (Marine virus AFVG_250M314, complete genome) position: , mismatch: 6, identity: 0.793

agtatacgaaatagaatacttaggagaaa	CRISPR spacer
catagctgaaatagaatacttaggagaat	Protospacer
 .**  .********************* 

6. spacer 2.2|823839|29|NC_010794|PILER-CR,CRT matches to MN694421 (Marine virus AFVG_250M313, complete genome) position: , mismatch: 6, identity: 0.793

agtatacgaaatagaatacttaggagaaa	CRISPR spacer
catagctgaaatagaatacttaggagaat	Protospacer
 .**  .********************* 

7. spacer 1.4|819707|29|NC_010794|PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.759

tggagagtaataaagacggataagtttgg	CRISPR spacer
tctggagtaataaagaaggataagatttt	Protospacer
*  .************ ******* **  

8. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MH542234 (Staphylococcus phage Terranova, complete genome) position: , mismatch: 7, identity: 0.781

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
. ** .  ** *********************

9. spacer 4.7|825761|32|NC_010794|PILER-CR matches to NC_041928 (Staphylococcus phage phiIBB-SEP1, complete genome) position: , mismatch: 7, identity: 0.781

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
. ** .  ** *********************

10. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MF417868 (Uncultured Caudovirales phage clone 7AX_1, partial genome) position: , mismatch: 7, identity: 0.781

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
. ** .  ** *********************

11. spacer 4.7|825761|32|NC_010794|PILER-CR matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 7, identity: 0.781

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
. ** .  ** *********************

12. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MH321490 (Staphylococcus phage Quidividi, complete genome) position: , mismatch: 7, identity: 0.781

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
. ** .  ** *********************

13. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MH321491 (Staphylococcus phage Twillingate, complete genome) position: , mismatch: 7, identity: 0.781

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
. ** .  ** *********************

14. spacer 4.7|825761|32|NC_010794|PILER-CR matches to NZ_CP022021 (Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence) position: , mismatch: 7, identity: 0.781

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
ataagcctggtaaaagaaaaagtagtactaaa	Protospacer
* *.************ ***** ****  *.*

15. spacer 4.7|825761|32|NC_010794|PILER-CR matches to NC_022045 (Listeria monocytogenes strain N1-011A plasmid, complete sequence) position: , mismatch: 7, identity: 0.781

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
ataagcctggtaaaagaaaaagtagtactaaa	Protospacer
* *.************ ***** ****  *.*

16. spacer 4.8|825829|31|NC_010794|PILER-CR matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 7, identity: 0.774

agaaaagctaaagaaaaatggggaacaattt	CRISPR spacer
acaggacataaagaaaaatggggaacatttg	Protospacer
* *..*  ******************* ** 

17. spacer 4.8|825829|31|NC_010794|PILER-CR matches to MN694246 (Marine virus AFVG_250M226, complete genome) position: , mismatch: 7, identity: 0.774

agaaaagctaaagaaaaatggggaacaattt	CRISPR spacer
cttaaagctaaagaaaaatgggaaaaagatt	Protospacer
   *******************.** *. **

18. spacer 5.8|826657|31|NC_010794|CRT matches to KJ081346 (Bacillus phage BCP8-2, complete genome) position: , mismatch: 7, identity: 0.774

cgagcaacactccattggttcgcctccgtgg	CRISPR spacer
cactccgcactccattggttctcctccttgg	Protospacer
*.  * .************** ***** ***

19. spacer 5.8|826657|31|NC_010794|CRT matches to NC_027352 (Bacillus phage JBP901, complete genome) position: , mismatch: 7, identity: 0.774

cgagcaacactccattggttcgcctccgtgg	CRISPR spacer
cactccgcactccattggttctcctccttgg	Protospacer
*.  * .************** ***** ***

20. spacer 5.8|826657|31|NC_010794|CRT matches to MH638312 (Bacillus phage Kioshi, complete genome) position: , mismatch: 7, identity: 0.774

cgagcaacactccattggttcgcctccgtgg	CRISPR spacer
cactccgcactccattggttctcctccttgg	Protospacer
*.  * .************** ***** ***

21. spacer 5.8|826657|31|NC_010794|CRT matches to NC_042140 (Bacillus virus BM15, complete genome) position: , mismatch: 7, identity: 0.774

cgagcaacactccattggttcgcctccgtgg	CRISPR spacer
cactccgcactccattggttctcctccttgg	Protospacer
*.  * .************** ***** ***

22. spacer 5.8|826657|31|NC_010794|CRT matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 7, identity: 0.774

cgagcaacactccattggttcgcctccgtgg	CRISPR spacer
cactccgcactccattggttctcctccttgg	Protospacer
*.  * .************** ***** ***

23. spacer 5.8|826657|31|NC_010794|CRT matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 7, identity: 0.774

cgagcaacactccattggttcgcctccgtgg	CRISPR spacer
cactccgcactccattggttctcctccttgg	Protospacer
*.  * .************** ***** ***

24. spacer 5.8|826657|31|NC_010794|CRT matches to MH638309 (Bacillus phage Hobo, complete genome) position: , mismatch: 7, identity: 0.774

cgagcaacactccattggttcgcctccgtgg	CRISPR spacer
cactccgcactccattggttctcctccttgg	Protospacer
*.  * .************** ***** ***

25. spacer 5.8|826657|31|NC_010794|CRT matches to NC_031056 (Bacillus phage Deep Blue, complete genome) position: , mismatch: 7, identity: 0.774

cgagcaacactccattggttcgcctccgtgg	CRISPR spacer
cactccgcactccattggttctcctccttgg	Protospacer
*.  * .************** ***** ***

26. spacer 5.8|826657|31|NC_010794|CRT matches to MN364664 (Xanthomonas phage Xoo-sp15, complete genome) position: , mismatch: 7, identity: 0.774

cgagcaacactccattggttcgcctccgtgg	CRISPR spacer
cactccgcactccattggttctcctccttgg	Protospacer
*.  * .************** ***** ***

27. spacer 5.8|826657|31|NC_010794|CRT matches to KJ451625 (Bacillus phage Bcp1, complete genome) position: , mismatch: 7, identity: 0.774

cgagcaacactccattggttcgcctccgtgg	CRISPR spacer
cactccgcactccattggttctcctccttgg	Protospacer
*.  * .************** ***** ***

28. spacer 2.5|823839|31|NC_010794|CRISPRCasFinder matches to NZ_CP015180 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB71, complete sequence) position: , mismatch: 8, identity: 0.742

agtatacgaaatagaatacttaggagaaaaa	CRISPR spacer
tgacgatcaaatagaatacttaggagtcaaa	Protospacer
 *   *. ******************  ***

29. spacer 2.5|823839|31|NC_010794|CRISPRCasFinder matches to NZ_CP020746 (Bacillus mycoides strain Gnyt1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

agtatacgaaatagaatacttaggagaaaaa	CRISPR spacer
tgacgatcaaatagaatacttgggagtaaaa	Protospacer
 *   *. *************.**** ****

30. spacer 2.5|823839|31|NC_010794|CRISPRCasFinder matches to NC_020240 (Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pAW63, complete sequence) position: , mismatch: 8, identity: 0.742

agtatacgaaatagaatacttaggagaaaaa	CRISPR spacer
tgacgatcaaatagaatacttaggagtcaaa	Protospacer
 *   *. ******************  ***

31. spacer 2.5|823839|31|NC_010794|CRISPRCasFinder matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 8, identity: 0.742

agtatacgaaatagaatacttaggagaaaaa	CRISPR spacer
taaagaagaattagaatacttaggaggaaat	Protospacer
 . * * *** ***************.*** 

32. spacer 2.5|823839|31|NC_010794|CRISPRCasFinder matches to NZ_CP031066 (Bacillus sp. SH8-8 plasmid pl193, complete sequence) position: , mismatch: 8, identity: 0.742

agtatacgaaatagaatacttaggagaaaaa	CRISPR spacer
tgatgatcaagtagaatacttaggagtaaaa	Protospacer
 *   *. **.*************** ****

33. spacer 2.5|823839|31|NC_010794|CRISPRCasFinder matches to NZ_CP031063 (Bacillus sp. AR4-2 plasmid pl192, complete sequence) position: , mismatch: 8, identity: 0.742

agtatacgaaatagaatacttaggagaaaaa	CRISPR spacer
tgatgatcaagtagaatacttaggagtaaaa	Protospacer
 *   *. **.*************** ****

34. spacer 2.5|823839|31|NC_010794|CRISPRCasFinder matches to NZ_CP018742 (Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence) position: , mismatch: 8, identity: 0.742

agtatacgaaatagaatacttaggagaaaaa	CRISPR spacer
tgatgatcaagtagaatacttaggagtaaaa	Protospacer
 *   *. **.*************** ****

35. spacer 3.1|824657|30|NC_010794|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 8, identity: 0.733

ccaacccgccctcctgggcaattcctggga	CRISPR spacer
tcaacccgccctcctcggcaatccgcgcct	Protospacer
.************** ******.* .*   

36. spacer 3.1|824657|30|NC_010794|CRISPRCasFinder matches to NC_013930 (Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence) position: , mismatch: 8, identity: 0.733

ccaacccgccctcctgggcaattcctggga	CRISPR spacer
acaacccgccctcctcggctattctggaac	Protospacer
 ************** *** ****. *.. 

37. spacer 4.5|825760|33|NC_010794|CRISPRCasFinder matches to MH542234 (Staphylococcus phage Terranova, complete genome) position: , mismatch: 8, identity: 0.758

caaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
tgtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
.. ** .  ** *********************

38. spacer 4.5|825760|33|NC_010794|CRISPRCasFinder matches to NC_041928 (Staphylococcus phage phiIBB-SEP1, complete genome) position: , mismatch: 8, identity: 0.758

caaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
tgtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
.. ** .  ** *********************

39. spacer 4.5|825760|33|NC_010794|CRISPRCasFinder matches to MF417868 (Uncultured Caudovirales phage clone 7AX_1, partial genome) position: , mismatch: 8, identity: 0.758

caaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
tgtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
.. ** .  ** *********************

40. spacer 4.5|825760|33|NC_010794|CRISPRCasFinder matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 8, identity: 0.758

caaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
tgtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
.. ** .  ** *********************

41. spacer 4.5|825760|33|NC_010794|CRISPRCasFinder matches to MH321490 (Staphylococcus phage Quidividi, complete genome) position: , mismatch: 8, identity: 0.758

caaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
tgtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
.. ** .  ** *********************

42. spacer 4.5|825760|33|NC_010794|CRISPRCasFinder matches to MH321491 (Staphylococcus phage Twillingate, complete genome) position: , mismatch: 8, identity: 0.758

caaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
tgtagctaaggaaaaagtaaaagaagtagaaga	Protospacer
.. ** .  ** *********************

43. spacer 4.5|825760|33|NC_010794|CRISPRCasFinder matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

caaaggcct---ggtaaaagtaaaagaagtagaaga	CRISPR spacer
---acatctgcaggtcgaagtaaaagaagtagaaga	Protospacer
   * ..**   *** .*******************

44. spacer 4.6|825828|32|NC_010794|CRISPRCasFinder matches to MH595538 (Vibrio phage BONAISHI, complete genome) position: , mismatch: 8, identity: 0.75

tagaaaagctaaagaaaaatggggaacaattt	CRISPR spacer
tccgaaagcaagagaaaaatggggaacgacta	Protospacer
*  .***** *.***************.*.* 

45. spacer 4.7|825761|32|NC_010794|PILER-CR matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
catctgcaggtcgaagtaaaagaagtagaaga	Protospacer
 *    * *** .*******************

46. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MT375526 (Pelagibacter phage Himinglaeva EXVC011P, complete genome) position: , mismatch: 8, identity: 0.75

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gatgattttgtaaaagtaaaagaaggacaaga	Protospacer
.* *...* **************** * ****

47. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MN693441 (Marine virus AFVG_25M481, complete genome) position: , mismatch: 8, identity: 0.75

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gaagaggaagtaaaagtagaagaagtaaaaga	Protospacer
.***.   .*********.********.****

48. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MT375531 (Pelagibacter phage Unn EXVC019P, complete genome) position: , mismatch: 8, identity: 0.75

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gatgattttgtaaaagtaaaagaaggacaaga	Protospacer
.* *...* **************** * ****

49. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MT375520 (Pelagibacter phage Bylgja EXVC0, complete genome) position: , mismatch: 8, identity: 0.75

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gatgattttgtaaaagtaaaagaaggacaaga	Protospacer
.* *...* **************** * ****

50. spacer 4.7|825761|32|NC_010794|PILER-CR matches to KT001915 (Citrobacter phage Merlin, complete genome) position: , mismatch: 8, identity: 0.75

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gaagaaaaggtaaaagaaaaagaagaagaagc	Protospacer
.***.   ******** ******** ***** 

51. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MT375527 (Pelagibacter phage Hroenn EXVC0, complete genome) position: , mismatch: 8, identity: 0.75

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gatgattttgtaaaagtaaaagaaggacaaga	Protospacer
.* *...* **************** * ****

52. spacer 4.8|825829|31|NC_010794|PILER-CR matches to NZ_CP032528 (Bacillus megaterium NCT-2 plasmid pNCT2_1, complete sequence) position: , mismatch: 8, identity: 0.742

agaaaagctaaagaaaaatggggaacaattt	CRISPR spacer
tttaaagctaaagaaagatggggaatatctc	Protospacer
   *************.********.* .*.

53. spacer 4.8|825829|31|NC_010794|PILER-CR matches to NZ_CP032531 (Bacillus megaterium NCT-2 plasmid pNCT2_3, complete sequence) position: , mismatch: 8, identity: 0.742

agaaaagctaaagaaaaatggggaacaattt	CRISPR spacer
tttaaagctaaagaaagatggggaatatctc	Protospacer
   *************.********.* .*.

54. spacer 4.8|825829|31|NC_010794|PILER-CR matches to MH595538 (Vibrio phage BONAISHI, complete genome) position: , mismatch: 8, identity: 0.742

agaaaagctaaagaaaaatggggaacaattt	CRISPR spacer
ccgaaagcaagagaaaaatggggaacgacta	Protospacer
  .***** *.***************.*.* 

55. spacer 5.1|826656|32|NC_010794|CRISPRCasFinder matches to KJ081346 (Bacillus phage BCP8-2, complete genome) position: , mismatch: 8, identity: 0.75

tcgagcaacactccattggttcgcctccgtgg	CRISPR spacer
acactccgcactccattggttctcctccttgg	Protospacer
 *.  * .************** ***** ***

56. spacer 5.1|826656|32|NC_010794|CRISPRCasFinder matches to NC_027352 (Bacillus phage JBP901, complete genome) position: , mismatch: 8, identity: 0.75

tcgagcaacactccattggttcgcctccgtgg	CRISPR spacer
acactccgcactccattggttctcctccttgg	Protospacer
 *.  * .************** ***** ***

57. spacer 5.1|826656|32|NC_010794|CRISPRCasFinder matches to MH638312 (Bacillus phage Kioshi, complete genome) position: , mismatch: 8, identity: 0.75

tcgagcaacactccattggttcgcctccgtgg	CRISPR spacer
acactccgcactccattggttctcctccttgg	Protospacer
 *.  * .************** ***** ***

58. spacer 5.1|826656|32|NC_010794|CRISPRCasFinder matches to NC_042140 (Bacillus virus BM15, complete genome) position: , mismatch: 8, identity: 0.75

tcgagcaacactccattggttcgcctccgtgg	CRISPR spacer
acactccgcactccattggttctcctccttgg	Protospacer
 *.  * .************** ***** ***

59. spacer 5.1|826656|32|NC_010794|CRISPRCasFinder matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 8, identity: 0.75

tcgagcaacactccattggttcgcctccgtgg	CRISPR spacer
acactccgcactccattggttctcctccttgg	Protospacer
 *.  * .************** ***** ***

60. spacer 5.1|826656|32|NC_010794|CRISPRCasFinder matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 8, identity: 0.75

tcgagcaacactccattggttcgcctccgtgg	CRISPR spacer
acactccgcactccattggttctcctccttgg	Protospacer
 *.  * .************** ***** ***

61. spacer 5.1|826656|32|NC_010794|CRISPRCasFinder matches to MH638309 (Bacillus phage Hobo, complete genome) position: , mismatch: 8, identity: 0.75

tcgagcaacactccattggttcgcctccgtgg	CRISPR spacer
acactccgcactccattggttctcctccttgg	Protospacer
 *.  * .************** ***** ***

62. spacer 5.1|826656|32|NC_010794|CRISPRCasFinder matches to NC_031056 (Bacillus phage Deep Blue, complete genome) position: , mismatch: 8, identity: 0.75

tcgagcaacactccattggttcgcctccgtgg	CRISPR spacer
acactccgcactccattggttctcctccttgg	Protospacer
 *.  * .************** ***** ***

63. spacer 5.1|826656|32|NC_010794|CRISPRCasFinder matches to MN364664 (Xanthomonas phage Xoo-sp15, complete genome) position: , mismatch: 8, identity: 0.75

tcgagcaacactccattggttcgcctccgtgg	CRISPR spacer
acactccgcactccattggttctcctccttgg	Protospacer
 *.  * .************** ***** ***

64. spacer 5.1|826656|32|NC_010794|CRISPRCasFinder matches to KJ451625 (Bacillus phage Bcp1, complete genome) position: , mismatch: 8, identity: 0.75

tcgagcaacactccattggttcgcctccgtgg	CRISPR spacer
acactccgcactccattggttctcctccttgg	Protospacer
 *.  * .************** ***** ***

65. spacer 4.7|825761|32|NC_010794|PILER-CR matches to AP013753 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C63A-MedDCM-OCT-S44-C48, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
tttagaatgataaaagtaaaagaaatagaaaa	Protospacer
   .*  **.**************.*****.*

66. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MH356730 (Staphylococcus phage VB-SauS-SA2, complete genome) position: , mismatch: 9, identity: 0.719

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
ggagattatgtaaaagtaaaagaaggaaaaga	Protospacer
..**...  **************** *.****

67. spacer 4.7|825761|32|NC_010794|PILER-CR matches to AP013471 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C63A-MedDCM-OCT-S41-C57) position: , mismatch: 9, identity: 0.719

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
tttagaatgataaaagtaaaagaaatagaaaa	Protospacer
   .*  **.**************.*****.*

68. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MN855978 (Bacteriophage sp. isolate 105, complete genome) position: , mismatch: 9, identity: 0.719

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
cgagatagagtaaatgtaaaagcagtagaaga	Protospacer
 .**..  .***** ******* *********

69. spacer 4.7|825761|32|NC_010794|PILER-CR matches to AP013752 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C63A-MedDCM-OCT-S30-C46, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
tttagaatgataaaagtaaaagaaatagaaaa	Protospacer
   .*  **.**************.*****.*

70. spacer 5.8|826657|31|NC_010794|CRT matches to JX094431 (Bacillus cereus bacteriophage vB_BceM_Bc431v3, complete genome) position: , mismatch: 9, identity: 0.71

cgagcaacactccattggttcgcctccgtgg	CRISPR spacer
aactccgcactccattggttctcctccttgt	Protospacer
 .  * .************** ***** ** 

71. spacer 1.2|819698|33|NC_010794|CRISPRCasFinder matches to NZ_CP040995 (Klebsiella pneumoniae strain FDAARGOS_775 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.697

agattggagagtaataaagacggataagtttgg	CRISPR spacer
gttgtggagagtaataaaaaaggataagggtaa	Protospacer
.   **************.* *******  *..

72. spacer 1.2|819698|33|NC_010794|CRISPRCasFinder matches to NZ_CP032836 (Klebsiella pneumoniae strain INF237 plasmid pINF237_03, complete sequence) position: , mismatch: 10, identity: 0.697

agattggagagtaataaagacggataagtttgg	CRISPR spacer
gttgtggagagtaataaaaaaggataagggtaa	Protospacer
.   **************.* *******  *..

73. spacer 3.3|824790|32|NC_010794|CRISPRCasFinder matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 10, identity: 0.688

tgaacaggaagaaattacaattcccgcagaaa	CRISPR spacer
tgaaaaggaaaaaattacaattcctatgatgc	Protospacer
**** *****.*************..... . 

74. spacer 3.10|824791|31|NC_010794|PILER-CR matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 10, identity: 0.677

gaacaggaagaaattacaattcccgcagaaa	CRISPR spacer
gaaaaggaaaaaattacaattcctatgatgc	Protospacer
*** *****.*************..... . 

75. spacer 4.7|825761|32|NC_010794|PILER-CR matches to NZ_CP043616 (Lactobacillus buchneri strain MGB0786 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
acaggcctggtaaatgtaaaataagctttttg	Protospacer
* ************ ****** ***.     .

76. spacer 4.7|825761|32|NC_010794|PILER-CR matches to NZ_CP048057 (Piscirickettsia salmonis strain Ps-8942B plasmid Ps8942B-p1, complete sequence) position: , mismatch: 10, identity: 0.688

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gttgtccaggtaaaagtaaaagaaggagcgcg	Protospacer
.  * ** ***************** ** . .

77. spacer 4.7|825761|32|NC_010794|PILER-CR matches to MK448730 (Streptococcus phage Javan311, complete genome) position: , mismatch: 10, identity: 0.688

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
cggtatattgttaaagtaaaaggagtagaaga	Protospacer
 .. .. * ** **********.*********

78. spacer 4.7|825761|32|NC_010794|PILER-CR matches to KM983327 (Clostridium phage phiCT453A, complete genome) position: , mismatch: 10, identity: 0.688

aaaggcctggtaaaagtaaaagaagtagaaga	CRISPR spacer
gtacaagaggtagaagttaaagaagtagaagt	Protospacer
. * .   ****.**** ************* 

79. spacer 5.1|826656|32|NC_010794|CRISPRCasFinder matches to JX094431 (Bacillus cereus bacteriophage vB_BceM_Bc431v3, complete genome) position: , mismatch: 10, identity: 0.688

tcgagcaacactccattggttcgcctccgtgg	CRISPR spacer
aaactccgcactccattggttctcctccttgt	Protospacer
  .  * .************** ***** ** 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	159646 : 168530	5	Bacillus_virus(40.0%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_010794|159646:168530|DBSCAN-SWA
CTTAGTTCGTTTTTTTAAACCTGTATCCAATACCTCTGACGGTCCTCAAGTATTGGGAAGCCCTGCCCAGTTTATCCCGGAGTCTCCGGATATGGGTATCGATCGTTCGCGTATCGACTGTTTTATCGTATCCCCAGACTTCCTTTAAAAGCTGTTCACGACTCTGAACGGCCCCTTCTCTTTCAACAAGGGTAGACAAGAGTCGAAATTCGATAGGGGTCAATTCGATCTTCTTTTTCTTAAAATAGGCGACTTTATCGATCGGATCGAGCCTGATGCCGTCCTCTTGCTGGATCTGCTCGGCTAAGGGGTTATCTTCCAATCTCCTGCGCAGTATCGACTGTATCCTCAGGATCAACTCTCTGGGACTAAAAGGCTTGGCGATGTAGTCATCGGCACCCAATTCAAGGCCTAAAATACGGTCCGAGGGGTCGGACTTCGCGGTCAAAATGACAATAGGAATGGATAAGGTATCCGGATCCTTCTTCAAGTATTTGCAAACGTCGAGTCCCGAAAATTCAGGTATCATCAGGTCAAGGACGATCAGATCGGGAAGTTCTTTTCTGGCGATACGCAACGCCTCCATCCCTTCTTTTGCTCCGATGGTCTCAAAGCCTTGGGAGTTGAGGTGTAAGCAGATTAAAGACAAAACATCTTCTTCATCTTCGACCACGAGTATTTTTTTCTTTCTTTTATCTATACCCTTATCGGTAGTCATGGATACACAACACCGCTCGATGATGAAAAAAGAGCTTAAAGAATTATTCTCTACTAACATTAGAATAGAATGAAGAGAATGTTAAAGCGAAAATTTCGTCAAAAAAGTCGCTTTTGCTTGCAATTTCTCACCAAAGGGGATACTCTAGATAGCAACGTCGTTCGATCTCCATTATTTTTTTTCTTTAAATCCCTCCCATTCTAGATATAATAACATTAATGAGTTTCAATTAGATCTTTTTTTAGCCCTTTAAAGATTCTCAAAGGCTTAACCGTTTTTTGCAGTGAATTGAACGAGCACAACTTATGCCGATAGAACCAGGTATTTCTACCTTACCCAAAGGAGATGTAAGTTATGATGCTTCTCGCATAGAGAAGTTGGAAGGATTGGAAGCTGTCCGGAAAAGGCCAGGAATGTATATCGGCCCAACCGATGAAAGAGGCTTACACCATTGCATTTTTGAAGTTCTCGATAATTCAATTGATGAACACTTGGCCGGTTATTGTTCTCGAATAGAACTGACCATCCATGTTGACGGTTCTGTTTCTATTTTAGACAATGGACGAGGAATTCCTGTCGATCCCCATCCTAAGTTTAAAATTCCTGCTGTTGAACTGGTTTTAACCAATCTCCATGCCGGGGGAAAATTTAGTCAAGGAGTGTACAAGTATTCAGGTGGGTTGCACGGGGTGGGAGCCAAGTGTGTAAATGCTTTATCTGAATGGTTCAAGGTTGAGGTGTTTAGGGATGGTAAGGTCTACAGGATGGAGTTTCGAAGAGGAAAAACATCTAAACCTTTGGAAGTGGTCGGCAAAACGCTCAAAACCGGTACGCTGATTACCTTTAAACCTGATCCCGAAATTTTCACCCAAACTTTGGAATTTAAAACGGAAATTATTGCCAAAAGACTTAGGGAACTAGCGTTTCTTAATCCGGGGTTGGAGATCTTGCTTTTGGATGAGAGACAACTCGACGGATCTAAACCGAGCAGTTTGCGGTTTTTTTTCAAAGAGGGCATTGCAGAGTTCGTGTCCCAATTTACCCAGGATTTGAAGCCCCTGTGCCCGCGGCCGATTGTTATCCAAAAGCAGAAAGACGACCTGATTGTCGACTGTGTACTTCAATATACCGAAGGCTATACAGAGCAGATTTTTTGCTATACTAACGGTATCCCTAATCCCGATGGGGGAAGCCATCTTTCCGGGTTAAGAACAGCCCTTACCCGTTCGATCAACCAGTATGGCAAAGCGAACAACCTGTTTAAGGAAAAAGATCCTCCCTTGAGTGGAGAGGATGTCCGGGAAGGGCTTGTCTGTATTCTTTCTCTAAAACATCCTTCACCTAGTTTTGAGTCTCAAACAAAAGTCAAACTCGTTTCTCCGGAAGTAGAAGGAGTAGTCTCCTCGTTGGTTTACGAGGGTCTCATGAATTATTTAGAACTCAACCCTCAAGTTGCCAAGAGGATCGTCGAAAAAGCCTTGACTGCGGCTCGGGCTCGGGAGGCTGCAAAAAAAGCCAGAGAAGCGGTCCGAAAAACAGCTTTAAGCGGGGGAGGCTTGCCCGGGAAGCTTGCCGACTGCTCCGTCAGGAATCCCCAAGAAGCCGAACTTTTTATCGTTGAAGGAGATTCCGCTGGAGGATCGGCAAAACAGGGAAGAAATAGGCAATTCCAGGCCATTCTTCCTATAAGAGGAAAATTAATCAACGTAGAAAAAGCCCGGTTGGACAAGGTCCTTAATAACGAGGAGATCCAGACGATCATTACGGCTGTGGGCACTGGCATTGGGGATGGCGATGGAGAAGGATCTTTTCTGTTGGAAAGGTTAAGGTATCACAAGATTATCTTGATGACCGATGCCGATGTGGACGGTTCTCACATTCGCACCCTCCTTTTAACTTTCTTTTATCGCCAGATGCCGGAGCTGATCAACAAAGGCCATGTGTATATCGCTCAACCTCCCCTCTACCTTATAGGAAAGAAAAAAGAAGAGTACTATGTCCAGAACGACGAGGAGCTCAACAAGATCCTTCTCGAGCAGGGAGTAAAGAACGTCGAACTTTTTAGAGCAAATGCAGAAAAGGTTTTTCGGGGAAGAGAACTCTTTGGTATTCTTTCGAAGTTGGAAAAATTGAGCCAGTTCTGTAAGTACCTTGAGCTTCATGGGATAGATTTTGATTTGCTCCTTGCCAACAAGGATCCCCAGACGGGCAAACTTCCCGAACACATTGTTCGGGTTTGGGAAAACAATCAAGAAAGGCTTTACTTTTTCTTCGATGAAAGACAACTGGGTCATTTTGCCGAAGAAAATCCCGATCTGCTCCTATTTGAAACCCCGGGAAGGGAGAGCCTCCCTCCGACCGGAGGAGAACTCCAAGCAGATGAAGAAAGGCCGAGAGCAAGACGGGCCAGTTACCTGGAATTATTTGAAAGCCCCATGGTGATGAAAATCTTGGAAGAACTTTTACAATTGGGTTTCGAAATCAGCCGCTATAAGTCTAAAGATGTTCCCCTTTATAAAATGATCGTCAAAAAAGGAGAAAAAGGGGAAAAGCAACTAGATATTTTTTCCATAGGACAAATTTTGGAAGTGGTGAAGGAAAATGGAAAGGAAGGGGTTGAAATCAAACGGTTTAAAGGTCTTGGGGAAATGAACCCCAAGCAGCTCTATGAAACGACAATGGATCCTCAAAAAAGGAAGCTTCTCAAGGTAGAGATTGCCGATGCCATTGAAGCCGAAAGGGTTTTTGTAACACTCATGGGCGAAGAGGTTGAGCCTAGAAAACGATTCATAGAAGAAAACGCCCTCCATGTCAGGAACCTAGATGTTTAATAACCGGCTGTTTTTGTATTTTGTTTGAATTTATGCCTCAAGAACCAGAAAACGGTAACCAACAATTGGATAGTCCGGATAACTCTTCGGTTCACTTGGTGGACGTGTCCGAAGAGATGAAGAGCTGTTTCATCGACTATGCCATGTCGGTGATTATCGCGCGGGCATTGCCGGACGTCAGGGATGGTTTAAAACCATCCCAGCGTCGAATTCTTTTTGCCATGCATGAGCTCGGCCTGGCTCCTAACCGGAAGCATTTAAAATGTGCAAAAATAGTGGGTGAAACCATGGGCAATTTCCATCCCCATGGCGATCAAGCTATTTATCCCACCCTGGTGCACATGGCCCAGCCTTGGGCGATGCGCGAAGTGCTGATCGATGGCCAAGGAAATTTTGGTTCTATTGAAGGAGATCCCCCAGCAGCCATGCGTTATACCGAAGCACGGCTTTCCGCGGCGGGGGCTTTGCTCATGGCGGATATGGATAAGGATACCGTGGATTTTGTGCCCAACTATGACGAAACCCGGATGGAGCCCTCGGTATTTCCCGCTTCTTTTCCCAATTTGATTGTTAACGGGGCAACGGGTATTGCCGTAGGTATGGCTACGAATATCCCTCCCCATAATCTTTCTGAAACGATTGATGGGCTGGTTGCCTTGATCGACCATCCCGGTCTTTCTTCCGAAGAGCTTTTGGAATATATAAAAGGCCCGGATTTCCCTACGGGGGGAGTGATTTTAGGGAGGGAAGGAATCGTTAATTATTTTACTACGGGCAGGGGGAGCCTTAAGGTGAGGGGAGAAATCCATGTTGAAGAACTCAGGGGAGGGAAGTCGGCGATCGTGATCGATGAAATTCCTTATAACGTCAATAGGGCCTCTCTTGTTGAAAAAATTGGAGAACTGGTCAATCAAAAAGTTATCCAGGAAATTGCCGATATCAGGGATGAATCCGATGAAAACACCCGGGTGGTCATCGAGCTGAAGAGGGATGCCGTGGCCAAGGTGGTCGCCAACAATCTTTACAGGCATACCCCTTTACAGACCACCTTTGCTGTGAACATGGTCGCGATTGATCGGCTGCGTCCCAAGTCACTTAATTTAAAAGAACTGTTGAGTTGCTATCTGGATCACCGGCATGAGGTCGTAACCAGGAGAACGCGGTTTGATTTAAACAAAGCCTTGGAAAGGGCCGAAGTTCTCGAAGGATTTTTGATCGCTTTAAGTAGATTGCAAGAGTTTATCGAGATTATAAGGCAATCCTCTAATAGAGATGAAGCCCGAAGGAAACTTTTGGATAGGGAGTTTTCCCCTGAATGGATCGAAAGCCTGGGTATACCCCTTGATGGGCAGAGGATGACTGAGGGAGCAATGTATAGACTGTCCCTCAGGCAGGTTGAAGCCATTTTGGATTTAAGATTATATCAACTGACGGGCCTTGAAAGGGAAAAAATAGCCGGCGAATATGCAGAATTGCTGGAAAAAATTAAGCAGTTTCGTCTCATACTGGCCAGCGAGGAAAAAATCTGGGCTATCGTCAAGGCTGAACTCCTCGAGATCAAGGAGAAATATGGGAACCCAAGAAAGACGAAAATTATTCCCGATGAGGGAGAAGTGGCCTTTGAAGACCTGGTTGCCAACCAACGGGTGGTTATTACCCTTACCCACAACGGGTTTATTAAAAGAACGAGTCTAGACAGTTACAGGTCTCAAAGAAGGGGAGGAAGAGGGGTAATAGGGATGTCTACCCAAGATACGGGGGTAGAGGAAGAGAAAGATTTTGTTGAATCTTTGTTCAACGCTTCGACCCATGATTTCCTGCTCTTTTTTACAACGGACGGAAGGGTTTATATCCAAAGAGTCTATGAAATTCCTGAAAAAGAAAGGGCGAGTAAAGGTAAAAATATAGCCAGCATTCTTGAATTAAAGCCGACAGAAGAAATTGCCTCGATGTTGAGGATAGTTGCTAATACGCAGGCTTCAGATGGGAGAGAATCATCGTGGGATAAAGAAGGCTATATATTTTTTTGTACCTTAAAAGGAAAGGTGAAGAAAACCCCTGTCAGTGAGTTTCGTAATATTCGTAAAGGGGGTATAACGGCCATTTCTATCGAGGAAAACGACAAGCTTATCGATTGCTTGTTTACGGATGGACAGAAAGAAATCGTTTTAATTACCAAGGAAGGACAAAGCATAAGGTTTTCAGAAAGCGACGTTCGTCCCATGGGAAGAAATGCCGCCGGAGTCATAGGGATCGACTTGCAGCCCGGAGACGAGGTCGTAGGGATGTCTATCGTTGATCATAGGGCAACTTTGCTGGTTGTCAGTGAAAAGGGAATGGGGAAAAGAACTTCTTTTGAAGAATACCGCAAGCAGAAAAGAGGGGGACAGGGAGTAATAACGATGAAAACCTCCGATAAAACGGGCAAAGTGGTAAAAGCGATCACCGTTTTGGATGATGACGAGCTGTTAGTCCTTACCCTTAAAGGAAATGTAATTCGGATCCATGTTAAAGATCTTCGAAAAACGGGAAGAAATACCCAAGGTGTTCGGCTCGTCCAATTGGACAGCGAAGATAAAGTCACTTCCATCGCCCGGATTATTCCAGACAAAGAAGACAATGAAGAGCCTTTATTTCCTTAATTTATCCCTGGCTAAAGCGGCATCTTCACATCCAGCCTCACCAGGAAACGGGATGAAGAGAGCACTCTTAGGCAACTTTTTTTTGTTGCTCTAGGTTTTTTTCCCATGGATCCGCGCTCTCCTGCTGATCCTAGGTAGCCCGGCGACTCTCCCATAGGCTTGGATGATTCCCAAGAGGATGCCTTGGCAGGAATAAATATAATAAAGATGGACCCAATGACTATCCCTTTAAGTATTTTTTAGCGAACTACAATGTCCCCGTTAACGTGGGTAAAAGGAAAGGGCCGTGCCGCGTGCCGGGTAGGAACAAACCAATAAGGAGATCGACCAAGGATTATTCCTTGGCGATTTTTAAGGCCGTGCGGCCTTAGACTTACGGGTTGTAGATTACCCAGCGATTGCTGCTTACCCAAAAAAAACTACCTAGCCCTTCATTGAGTCCGGTTATCTTGTTGTCTTGGGCTTGAGGGCAGAGCCTGCCCGCTCCAATGGCTCTACTATCCTGAACTTGCGGTCATTTTCTTGGGAATCAACGGCGCAGTCTCCTTCCATTCTTCTCTTGGATATTACCCCTGGACACCCCCTTGAGTAGAATTGGCATATCAGCTCTTCCCTGCTGCTTTTTTTAGCCTATCATTGATGGCTATACCCAGTCCTTTTTCGGGAAGGAGTAAAGCATAAATTTTTTCTACCCCGCTTTTGTCAAGATCGCGAAGCATCTGGAATAGGTTTGCTGCTGCTTCAGTAAGAGATTTCCGGGGAGAAAGGTTCCTGAACGTTTTAAAACCCTGAGTATCTTCTTCTCCCCAAAAAAGCAAAGCACTATTTTTTCTTTTATACAAGGGTAGATCGGTAAGAGTAAAAACGGTTTCTAGAGGGGTTGATGGAGCATAATGCCTTGGGAATCTCCCTGGAGCCAGGTTCCATCCTGTAGAGGGCGGGGGGATAGTTACAGGGCCGATTTTTCTTTCAATTTCTTCTTTGGAAATGGCGCCGAATCGAAGTAACAAGGGAGGAATTTGAGCGAAAGAAACTACGGTAGATTCAATTCCTACTTGGCATGGACCCCCGTCTAAAATAAAGGGGATAATCTGGTCGAACTCTTCGTAGACGGCTTGAGCGGTTGTAGGGCTGATTTTCCCAAATTTGTTGGCGCTGGGTGCTGCTAGGGGCCTGCCGAATTTTTGGATCAATTCTAATGTTAAAGGGTGCTTGGGCACCCTGAAGCCGGCAAAAGGAAGACCTGCAGTGACAATGTCGGGAATAGATTCCTTTTTTTTAAGAACGAGAGTCAATGGACCGGGCCAAAAGCTTTCTCCGAGTATTCTCGCTTCATCAGGCAAATCGCAGACATAAAAGCCCACTTCTTTAAGAGAAGAACAGTGGACGATGACGGGGTCAATTTTGGGTCTTTTTTTCAGCTCAAAAATTCGAGCTACGGCTTCAGGATTTAGACCGTCTGCCGCTAAACCGTAAACCGTTTCGGTAGGGATAGCGACAACTTCACCTTTATTTAAAAGGTCAACAGCCTTTTCTATTGCCTTTTTGATTTCTAGATTAAATTCTTTATCTTTCATGAATTAAAAAACATCGAATAGATGAAAGTAGGCTTTGATTAAAAAATGCGAAAGGGAGCTCTTTATAAAAAGCATGAAAATACAAAAATCCTTCTTTATGCCTATTAAAAAAAATTTTTGAAGAAATCGAATTCTTTACATGAGATAATAGCCAATGATGAGAGTTGTATTTATCGGCACGGGAGATTTCGGTGTCCCAAGCCTTGAAGCGATAGCCCTGGATGGAAGATATACTATACCGGCAGTTGTGACCCAGGCTGACAAACCTTTGGGGAGGCAAAAGGAAGTTATCCCTTCACCTATAAAAAGGACCGCTTTAAAACATCACATATGGGTTTTTCAACCTGAAAACATAAATTCTGCGGGTTCAATTCAACAGATCCAATTTCTTAAACCTGATCTGCTCGTGGTTTGCGACTATGGACAAATATTGTCGAAAGCCGTACTGGAAATTCCTTCAATAGGTGCTCTAAACATCCATGGCTCTCTGCTTCCCAAGTATCGTGGAGCATCTCCGATTCAGGCCGCCATAATGAACAGGGACAAAGAAACAGGAGTGACGGTCATATGGATGGATGAAGGCATTGATACGGGAGATATTTTGATGAGCGATAAGCTGTTGGTTCGCTCTACCGACACGGCTGAAACATTACATCATAGACTTGCCGAGCTTGGGGCTCGATTAATTATCCAATCCTTGGAAGCGATTAGGGCGGGCAAAGCCCCTCGGATCCCTCAAAATAACGCCCTTGCTTCTTATGCTAAGAAAATCAAAAAAGAGCAGGCCCTGATCGACTGGACAAAGGATCGACACGAAATTGACGCGATGATTCGAGCCTTTAATCCGTGGCCCGTCGCTTTTACCACCGTTTGGATCGGAGGAGAGAAAAAAATTTTAAAGATATTTAAAGTGATCATTTCTCATCGGGCAAAAGGTATGCCCGGCGAAGTGGTTCGAATCGATCGGCATGGCATTCTCGTTGCCGCGGGCCGTTCCGGTGGGCTTCTGTTGAGAGAGGTCCAGCTTGAAGGTAGGAAAAGGATGCATGCTGCAGATTTTGCTCGTGGAGCCCGGTTAGCTATAGGTACGGTTTTGGGGCAAAAAGATGAGCAATAG

Protein sequences of DBSCAN-SWA_1

>NC_010794|159646:168530|167567_168530_+|WP_012462503.1|tRNA|DBSCAN-SWA
MMRVVFIGTGDFGVPSLEAIALDGRYTIPAVVTQADKPLGRQKEVIPSPIKRTALKHHIWVFQPENINSAGSIQQIQFLKPDLLVVCDYGQILSKAVLEIPSIGALNIHGSLLPKYRGASPIQAAIMNRDKETGVTVIWMDEGIDTGDILMSDKLLVRSTDTAETLHHRLAELGARLIIQSLEAIRAGKAPRIPQNNALASYAKKIKKEQALIDWTKDRHEIDAMIRAFNPWPVAFTTVWIGGEKKILKIFKVIISHRAKGMPGEVVRIDRHGILVAAGRSGGLLLREVQLEGRKRMHAADFARGARLAIGTVLGQKDEQ
>NC_010794|159646:168530|163226_165836_+|WP_048809998.1|DBSCAN-SWA
MPQEPENGNQQLDSPDNSSVHLVDVSEEMKSCFIDYAMSVIIARALPDVRDGLKPSQRRILFAMHELGLAPNRKHLKCAKIVGETMGNFHPHGDQAIYPTLVHMAQPWAMREVLIDGQGNFGSIEGDPPAAMRYTEARLSAAGALLMADMDKDTVDFVPNYDETRMEPSVFPASFPNLIVNGATGIAVGMATNIPPHNLSETIDGLVALIDHPGLSSEELLEYIKGPDFPTGGVILGREGIVNYFTTGRGSLKVRGEIHVEELRGGKSAIVIDEIPYNVNRASLVEKIGELVNQKVIQEIADIRDESDENTRVVIELKRDAVAKVVANNLYRHTPLQTTFAVNMVAIDRLRPKSLNLKELLSCYLDHRHEVVTRRTRFDLNKALERAEVLEGFLIALSRLQEFIEIIRQSSNRDEARRKLLDREFSPEWIESLGIPLDGQRMTEGAMYRLSLRQVEAILDLRLYQLTGLEREKIAGEYAELLEKIKQFRLILASEEKIWAIVKAELLEIKEKYGNPRKTKIIPDEGEVAFEDLVANQRVVITLTHNGFIKRTSLDSYRSQRRGGRGVIGMSTQDTGVEEEKDFVESLFNASTHDFLLFFTTDGRVYIQRVYEIPEKERASKGKNIASILELKPTEEIASMLRIVANTQASDGRESSWDKEGYIFFCTLKGKVKKTPVSEFRNIRKGGITAISIEENDKLIDCLFTDGQKEIVLITKEGQSIRFSESDVRPMGRNAAGVIGIDLQPGDEVVGMSIVDHRATLLVVSEKGMGKRTSFEEYRKQKRGGQGVITMKTSDKTGKVVKAITVLDDDELLVLTLKGNVIRIHVKDLRKTGRNTQGVRLVQLDSEDKVTSIARIIPDKEDNEEPLFP
>NC_010794|159646:168530|159646_160363_-|WP_048810407.1|DBSCAN-SWA
MTTDKGIDKRKKKILVVEDEEDVLSLICLHLNSQGFETIGAKEGMEALRIARKELPDLIVLDLMIPEFSGLDVCKYLKKDPDTLSIPIVILTAKSDPSDRILGLELGADDYIAKPFSPRELILRIQSILRRRLEDNPLAEQIQQEDGIRLDPIDKVAYFKKKKIELTPIEFRLLSTLVEREGAVQSREQLLKEVWGYDKTVDTRTIDTHIRRLRDKLGRASQYLRTVRGIGYRFKKTN
>NC_010794|159646:168530|166438_167413_-|WP_012462501.1|DBSCAN-SWA
MKDKEFNLEIKKAIEKAVDLLNKGEVVAIPTETVYGLAADGLNPEAVARIFELKKRPKIDPVIVHCSSLKEVGFYVCDLPDEARILGESFWPGPLTLVLKKKESIPDIVTAGLPFAGFRVPKHPLTLELIQKFGRPLAAPSANKFGKISPTTAQAVYEEFDQIIPFILDGGPCQVGIESTVVSFAQIPPLLLRFGAISKEEIERKIGPVTIPPPSTGWNLAPGRFPRHYAPSTPLETVFTLTDLPLYKRKNSALLFWGEEDTQGFKTFRNLSPRKSLTEAAANLFQMLRDLDKSGVEKIYALLLPEKGLGIAINDRLKKAAGKS
>NC_010794|159646:168530|160668_163194_+|WP_012462499.1|DBSCAN-SWA
MPIEPGISTLPKGDVSYDASRIEKLEGLEAVRKRPGMYIGPTDERGLHHCIFEVLDNSIDEHLAGYCSRIELTIHVDGSVSILDNGRGIPVDPHPKFKIPAVELVLTNLHAGGKFSQGVYKYSGGLHGVGAKCVNALSEWFKVEVFRDGKVYRMEFRRGKTSKPLEVVGKTLKTGTLITFKPDPEIFTQTLEFKTEIIAKRLRELAFLNPGLEILLLDERQLDGSKPSSLRFFFKEGIAEFVSQFTQDLKPLCPRPIVIQKQKDDLIVDCVLQYTEGYTEQIFCYTNGIPNPDGGSHLSGLRTALTRSINQYGKANNLFKEKDPPLSGEDVREGLVCILSLKHPSPSFESQTKVKLVSPEVEGVVSSLVYEGLMNYLELNPQVAKRIVEKALTAARAREAAKKAREAVRKTALSGGGLPGKLADCSVRNPQEAELFIVEGDSAGGSAKQGRNRQFQAILPIRGKLINVEKARLDKVLNNEEIQTIITAVGTGIGDGDGEGSFLLERLRYHKIILMTDADVDGSHIRTLLLTFFYRQMPELINKGHVYIAQPPLYLIGKKKEEYYVQNDEELNKILLEQGVKNVELFRANAEKVFRGRELFGILSKLEKLSQFCKYLELHGIDFDLLLANKDPQTGKLPEHIVRVWENNQERLYFFFDERQLGHFAEENPDLLLFETPGRESLPPTGGELQADEERPRARRASYLELFESPMVMKILEELLQLGFEISRYKSKDVPLYKMIVKKGEKGEKQLDIFSIGQILEVVKENGKEGVEIKRFKGLGEMNPKQLYETTMDPQKRKLLKVEIADAIEAERVFVTLMGEEVEPRKRFIEENALHVRNLDV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048810407.1|159646_160363_-	winged helix-turn-helix domain-containing protein	W8CYM9	Bacillus_phage	2.9e-36	37.8
WP_012462499.1|160668_163194_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	6.1e-12	45.5
WP_048809998.1|163226_165836_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.5e-111	34.8
WP_012462501.1|166438_167413_-	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	1.1e-41	35.6
WP_012462503.1|167567_168530_+|tRNA	methionyl-tRNA formyltransferase	M4QRX9	Synechococcus_phage	2.8e-10	33.3