CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011245	Borrelia duttonii Ly plasmid pl28, complete sequence	1 crisprs	NA	1	1	0	0
NC_011226	Borrelia duttonii Ly plasmid pl15, complete sequence	0 crisprs	cas14j	0	0	0	0
NC_011247	Borrelia duttonii Ly plasmid pl165, complete sequence	0 crisprs	cas14j	0	0	1	0
NC_011250	Borrelia duttonii Ly plasmid pl40, complete sequence	0 crisprs	NA	0	0	0	0
NC_011229	Borrelia duttonii Ly, complete sequence	0 crisprs	NA	0	0	0	0
NC_011259	Borrelia duttonii Ly plasmid pl23b, complete sequence	0 crisprs	NA	0	0	0	0
NC_011261	Borrelia duttonii Ly plasmid pl26, complete sequence	0 crisprs	NA	0	0	0	0
NC_011264	Borrelia duttonii Ly plasmid pl32, complete sequence	1 crisprs	NA	0	1	0	0
NC_011257	Borrelia duttonii Ly plasmid pl23, complete sequence	0 crisprs	NA	0	0	0	0
NC_011265	Borrelia duttonii Ly plasmid pl27, complete sequence	0 crisprs	NA	0	0	0	0
NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	0 crisprs	NA	0	0	0	0
NC_011224	Borrelia duttonii Ly plasmid pl11, complete sequence	0 crisprs	NA	0	0	0	0
NC_011251	Borrelia duttonii Ly plasmid pl41, complete sequence	0 crisprs	NA	0	0	0	0
NC_011254	Borrelia duttonii Ly plasmid pl42, complete sequence	0 crisprs	NA	0	0	0	0
NC_011262	Borrelia duttonii Ly plasmid pl31, complete sequence	0 crisprs	NA	0	0	0	0
NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	1 crisprs	NA	4	4	0	0
NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	0 crisprs	NA	0	0	0	0

1. NC_011245

CRISPR-Cas detection and classification

Crispr_ID: NC_011245_1

• CRISPR_ID: NC_011245_1
• CRISPR_location: 11931-12013
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_011245_1

Consensus_repeat	Method
AAAATCGACAAGGTAAGGGACGAATTAAA	CRISPRCasFinder

spacers of NC_011245_1

>1.1|11960|25|NC_011245|CRISPRCasFinder
ATCAGATATTAAAGAACTTGATAAC

CRISPR arrays and Neighbor proteins around NC_011245_1

CRISPR arrays

The CRISPR arrays of NC_011245_1

>merge|NC_011245|1|11931-12013|CRISPRCasFinder
AAAATCGACAAGGTAAGGGACGAATTAAAATCAGATATTAAAGAACTTGATAACAAAATCGACAAAGTAAGGGACGAATTAAA

>NC_011245|1|1|11931-12013|CRISPRCasFinder
AAAATCGACAAGGTAAGGGACGAATTAAA	ATCAGATATTAAAGAACTTGATAAC
AAAATCGACAAAGTAAGGGACGAATTAAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_011245.1|WP_143705866.1|9205_9622_-|Mlp-family-lipoprotein	unknown	unknown	gnl|CDD|308750
NC_011245.1|WP_012539227.1|8019_8772_-|site-specific-integrase	unknown	unknown	gnl|CDD|271175
NC_011245.1|WP_012539242.1|19018_20149_+|DUF787-family-protein	unknown	unknown	gnl|CDD|310307
NC_011245.1|WP_041177874.1|16255_17218_+|hypothetical-protein	unknown	unknown	unknown
NC_011245.1|WP_012539236.1|15673_16234_+|DUF228-domain-containing-protein	unknown	unknown	gnl|CDD|281047
NC_011245.1|WP_012539235.1|14874_15651_+|DUF228-domain-containing-protein	unknown	unknown	gnl|CDD|281047
NC_011245.1|WP_012539241.1|18468_19029_+|DUF764-family-protein	unknown	unknown	gnl|CDD|310276
NC_011245.1|WP_012539234.1|14320_14875_+|DUF228-domain-containing-protein	unknown	unknown	gnl|CDD|281047
NC_011245.1|WP_041177872.1|6570_6780_+|hypothetical-protein	unknown	unknown	unknown
NC_011245.1|WP_012539225.1|6754_7198_+|single-stranded-DNA-binding-protein	unknown	unknown	gnl|CDD|366099
NC_011245.1|WP_012539230.1|10317_11670_+|PBSX-family-phage-terminase-large-subunit	unknown	unknown	gnl|CDD|273684
NC_011245.1|WP_012539226.1|7243_7660_+|DUF261-domain-containing-protein	unknown	unknown	gnl|CDD|281224
NC_011245.1|WP_012539239.1|17679_18096_+|DUF1506-family-protein	unknown	unknown	gnl|CDD|284754
NC_011245.1|WP_012539232.1|12329_13592_+|DUF1073-domain-containing-protein	unknown	unknown	gnl|CDD|368870
NC_011245.1|WP_041177875.1|18088_18472_+|hypothetical-protein	unknown	unknown	unknown
NC_011245.1|WP_012539222.1|3313_3874_-|DUF226-domain-containing-protein	unknown	unknown	gnl|CDD|308504
NC_011245.1|WP_081434529.1|5241_6555_+|DUF244-domain-containing-protein	unknown	unknown	gnl|CDD|281152
NC_011245.1|WP_012539223.1|3883_4996_-|plasmid-partitioning-associated-protein-2	unknown	unknown	gnl|CDD|367076
NC_011245.1|WP_012539229.1|9773_10313_+|DUF603-domain-containing-protein	unknown	unknown	gnl|CDD|282496
NC_011245.1|WP_012539233.1|13598_14309_+|DUF1357-family-protein	unknown	unknown	gnl|CDD|284502

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_011245.1|WP_143705866.1|9205_9622_-|Mlp-family-lipoprotein	gnl|CDD|308750	pfam03304, Mlp, Mlp lipoprotein family. The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species. This family were previously known as 2.9 lipoprotein genes. These surface expressed genes may represent new candidate vaccinogens for Lyme disease. Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.	8.44922e-22
NC_011245.1|WP_012539227.1|8019_8772_-|site-specific-integrase	gnl|CDD|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	2.21246e-06
NC_011245.1|WP_012539236.1|15673_16234_+|DUF228-domain-containing-protein	gnl|CDD|281047	pfam02989, DUF228, Lyme disease proteins of unknown function.	3.11934e-44
NC_011245.1|WP_012539235.1|14874_15651_+|DUF228-domain-containing-protein	gnl|CDD|281047	pfam02989, DUF228, Lyme disease proteins of unknown function.	5.33128e-39
NC_011245.1|WP_012539242.1|19018_20149_+|DUF787-family-protein	gnl|CDD|310307	pfam05619, DUF787, Borrelia burgdorferi protein of unknown function (DUF787). This family consists of several hypothetical proteins of unknown function from Borrelia burgdorferi (Lyme disease spirochete).	6.92115e-123
NC_011245.1|WP_012539234.1|14320_14875_+|DUF228-domain-containing-protein	gnl|CDD|281047	pfam02989, DUF228, Lyme disease proteins of unknown function.	3.08008e-63
NC_011245.1|WP_012539225.1|6754_7198_+|single-stranded-DNA-binding-protein	gnl|CDD|366099	pfam00436, SSB, Single-strand binding protein family. This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.	1.5727e-21
NC_011245.1|WP_012539230.1|10317_11670_+|PBSX-family-phage-terminase-large-subunit	gnl|CDD|273684	TIGR01547, Uncharacterized_protein_YqaT, phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. [Mobile and extrachromosomal element functions, Prophage functions].	4.21159e-36
NC_011245.1|WP_012539226.1|7243_7660_+|DUF261-domain-containing-protein	gnl|CDD|281224	pfam03196, DUF261, Protein of unknown function, DUF261.	1.21172e-68
NC_011245.1|WP_012539239.1|17679_18096_+|DUF1506-family-protein	gnl|CDD|284754	pfam07405, DUF1506, Protein of unknown function (DUF1506). This family consists of several bacterial proteins of around 130 residues in length. Members of this family seem to be specific to Borrelia burgdorferi (Lyme disease spirochete). The function of this family is unknown.	1.30201e-22
NC_011245.1|WP_012539232.1|12329_13592_+|DUF1073-domain-containing-protein	gnl|CDD|368870	pfam06381, DUF1073, Protein of unknown function (DUF1073). This family consists of several hypothetical bacterial proteins. The function of this family is unknown.	1.60939e-38
NC_011245.1|WP_012539241.1|18468_19029_+|DUF764-family-protein	gnl|CDD|310276	pfam05561, DUF764, Borrelia burgdorferi protein of unknown function (DUF764). This family consists of proteins of unknown function from Borrelia burgdorferi (Lyme disease spirochete).	1.10727e-35
NC_011245.1|WP_012539222.1|3313_3874_-|DUF226-domain-containing-protein	gnl|CDD|308504	pfam02890, DUF226, Borrelia family of unknown function DUF226. This family of proteins are found in Borrelia. The proteins are about 190 amino acids long and have no known function.	2.96096e-48
NC_011245.1|WP_081434529.1|5241_6555_+|DUF244-domain-containing-protein	gnl|CDD|281152	pfam03112, DUF244, Uncharacterized protein family (ORF7) DUF. Several members of this family are Borrelia burgdorferi plasmid proteins of uncharacterized function.	1.9381e-10
NC_011245.1|WP_012539223.1|3883_4996_-|plasmid-partitioning-associated-protein-2	gnl|CDD|367076	pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded by an open reading frame in plasmid borne DNA repeats of Borrelia species. This protein is known as ORF-A. The function of this putative protein is unknown.	2.52927e-58
NC_011245.1|WP_012539229.1|9773_10313_+|DUF603-domain-containing-protein	gnl|CDD|282496	pfam04645, DUF603, Protein of unknown function, DUF603. This family includes several uncharacterized proteins from Borrelia species.	5.07125e-23
NC_011245.1|WP_012539233.1|13598_14309_+|DUF1357-family-protein	gnl|CDD|284502	pfam07094, DUF1357, Protein of unknown function (DUF1357). This family consists of several hypothetical bacterial proteins of around 225 residues in length. Members of this family appear to be specific Borrelia burgdorferi (Lyme disease spirochete). The function of this family is unknown.	1.23316e-32

Protein sequences

>NC_011245.1|WP_012539230.1|10317_11670_+|PBSX-family-phage-terminase-large-subunit
MDIYSSSIFKSLQREYKRDFGIDIASFMKPKSVVVDFKSFENKFLNKKQRKVLSAIEKNNQNKVILSGGIASGKTFLACYLFLKTLLKNRHRYSHDTNNFILGNSQKALEINVTGQFKKLANMLKIPFVPKYSNTSYFEINSLRVNLYGGDKIRDFERFRGSNSAVIYVNEATTLHKETLKEALKRLRIKPEFIVFDTNPDHPEHYFKTDYIDNNTVYSTYNFTTYDNEEISKEFIKTQEELYKDFPTYKASVLLGEWVANNDAIFRNINIIEDYEFKSPIAYLDPAYSSGGDNTSLCVLEKVSDKYYAFIFQEQKPAVDPYVMNTIKVIMGNLNVNTLYIEDRDDIKGAGALTREYVRLRNNMENYFRIAPTRPKTDKYARIVSLLTPFTYKKMHLLDYSSRSAFSDIYSYNGDGKVHDDALDALSAAYLILSLNYRDRIRHFTKFTFI
>NC_011245.1|WP_012539229.1|9773_10313_+|DUF603-domain-containing-protein
MNKVKRAYEDYAMYFNEDRLSDAEIAKELCVSRANVCKMRQKWEISQDNPKEFSSDNKITICKTTLDSVLGRVLENNAKARELKSQFSITKSQLGLKFMKAFNNFLELELEDCIEEIDLLEREIKMIKNKGNSRELQDKKIKLKDLKREKENKTMKLCYETMKKLKIADLDEGRFRFGG
>NC_011245.1|WP_143705866.1|9205_9622_-|Mlp-family-lipoprotein
MKITNFTLILLLLMSSCDQEKNTNKGIKSRNKRDLEQQIEAQKTPEETLREKLNDNQKKGLDFLKDALSSESDFNNFLNSDESKIKDALDHIQSELAKCTGDDAADKKNTFKQVVEGALKAGLDNFKDQSNSTCGQGN
>NC_011245.1|WP_012539227.1|8019_8772_-|site-specific-integrase
MSEYEILKAKIKELEKQNSILLKETRQYKKELLQTKSNTKSKSIPIRFYLNDKTIRLVKKSIDKLKQTDPISGWFVHILSITGCRGVEIQNIRLDDIVREENNNGDVFYSLRVNVAKKRSNICIREVVISKSEFESIEEIHKLHFKNKGQDSRRTYLFQKSKHRFKDNRINISEISKQFKELLTKSGFKHRKSLHICRNIFIATLKSKGYNSFEIKELMKYASTSEIDNVYGLSKASKLKAYHDIKDGFK
>NC_011245.1|WP_012539226.1|7243_7660_+|DUF261-domain-containing-protein
MKLQQNDNRFLLEIRRWGCYFLSLHYYIASLTKNEFDFNDINNNYYQFIRLGYMRINCYILNPCRILSFFGIKRDVRVEDKDYKCLKDEFEISEVKIKNNIGSHFMATNNTEVLYDPLFLKDRGQEYHLKSKRIFRKI
>NC_011245.1|WP_012539225.1|6754_7198_+|single-stranded-DNA-binding-protein
MMMGVLMSDINNITLSGRLVRDSLLSYSSTNLAILNFSIANNIKVKREGEWRDNAQFFNCVLFGKRAETLIHFLSQGKQVVVQGSMRHEYYKDKHSGVDKIKSIIFVEQLRLFGTGTKHHNPKVDIPVPVPPHVPDPACEFNEDIPF
>NC_011245.1|WP_041177872.1|6570_6780_+|hypothetical-protein
MIIHVIIFILIILYRVLKFICKCLRNIIKKYVYDYHTTKEYNEYLGNLYCDLQRMEIRRRLYDDGGFDV
>NC_011245.1|WP_081434529.1|5241_6555_+|DUF244-domain-containing-protein
MNQQDLYTQQVIKGLEAFVPAPESDNNKQTNVSKMSKIGRKLPGIKKNEYFKFNSKVDFSIQRGTLTKFGASEVGSIFLGADAAAELIVSRVLKSFGKEVPYKDNLHIKKGKALENLGFDEFLRIYSDNIQVLHKNKYANGIDKYNYFKRVGLGDNLVGATIDGWFVNNQGEAELLEIKCSDSNYLTSAITEYNQTGNFLDSKYFFKYYVQAQVQLACTGLSKCNLFFLIGDEPINCVIERNNGFIAKVMIYIATLDMEVGRMCNIIKRDKSIDLANIDIEDLTNHIKLLLQDSEYYSDLSELNYKDEFISFINIVNLNIGAEEQELLEKHLVDIQSKQTEIEKKEKENAKELYALTKPDKDILKDIFGKLSMEFSLTDNIVYRLGKNIFALNSGKRAIKDRFKLITDHYDYYDINDISSRRKFSISNPVSSTSYAI
>NC_011245.1|WP_012539223.1|3883_4996_-|plasmid-partitioning-associated-protein-2
MRTIKKPINKYQHKLIVLISTLNYINSKFKQYNQNKILYYFNNNLNNNGQKKATLKTLQSYLYKLEKEFHVTSNYYRHLGENCGTEIHYKLRFSKKVCHYKINRHFKDKKEERFQQRANSYHQQTCTNNGSLKKNGSAEKWECINNNSNNKNNKKKKKELEKTEREKAQLEKYIKKCEFKDDKYLSILNLETTKEIKIKKLIELKKEENRIEREQNKNKKLVDKQNKLEKILEETKEGLRKEGYNERQLETEIQKAYEKYKDKPHFIVESSKYGDLGQIVKRIKKTVECKKKGKKEDHKQIRNNIFSILIDQLKNKVEVKVLAPILRNYLNKQVDLKYSQVFNNHYYYEILEMVKGKENLKIGEYEKIVN
>NC_011245.1|WP_012539222.1|3313_3874_-|DUF226-domain-containing-protein
MDSVLERLKEKKFEIKEKKDKSIFIKIDKENNRKLYHTKIMKDFYAFGVDKRQTHKFFISFRGLFNQEKIEFFSLFSLKRGDKFLGIFYGHRKPIKNVIIKYEENGLIKSSTFSKVYYIEFRFKKGSIYCYIKGIYRLLRKDKVYTKYCEALIEKLSKLEKEVHMFYNKKLLEGGLITKWIEKNQK
>NC_011245.1|WP_012539232.1|12329_13592_+|DUF1073-domain-containing-protein
MKHNSKINSYELYKHSIFFRNYINNVAEDVLHNGINLEVIYSTALSGIEDTLDNLKVELKDALLNCIISYRFNGIGYILVKTAGDDNLDLEINSELPIGFVYLDFGCVRDRGSKSPYVIYSFKEEDDEGVLVRREVKIHKSRLIIYENYDYILGSYTPCYTQSFLLNVALFETIYQEIDRRIRNYNFLFYRDESLAEINDAISKASLQFNLLTKSNKDNSSGMFTKLFKRNSDDGSVDNSGDEVVKKGTNILNALNNDLSHELERLKSNLNNDGIFYSGSESAHLEVMKYELTFLKDTLELVKAKIGADTKEPLTRSFNEQTKGLGNDGKGDRSNYYDFLKGVQERIEIAVNQKLNQYFGLDMRFNSLILLSETDKIEHDIKLLELYEKYKSAIGYEELSEKSVELLKDKLFFGEIFLGG
>NC_011245.1|WP_012539233.1|13598_14309_+|DUF1357-family-protein
MKIETKENNKVVSKNVKVISKANNVKSEVPTKTISLDEYNKLMKYKKGLAKNDKQILSNKASKPLSINQRVAQELAEVKARNKAKNQILREAIKLNEIDSLSKKYLSSHFNKEALLSRGHSLDEIMLAQKRELVRKYVPRDQIRAIAKIDNLEHIKGTLLDMLVNLAKTSIKKTTKNKSVTTKSIGKTGIKFEDKISTASPHFKSTNNNELRSGILNRYKELLKRPSKVRKKRARA
>NC_011245.1|WP_012539234.1|14320_14875_+|DUF228-domain-containing-protein
MADIAKLKKEYEDKLNEIKSYMKNPSVDPGLFSNNTEFRDKNLHFAASGGTTTSSVDIIENMPSKGYPYKRGVKLDFSDAKYEPVVVPGGGSDLYGICVDIDDYTEIAQVVPINNNFQGWLIAKKDNATSISIGDTLKFNNFGELEKDTSSSRLINAVALSKAVKLNENLYIIHVSIFGNRAKS
>NC_011245.1|WP_012539235.1|14874_15651_+|DUF228-domain-containing-protein
MSGKVNDVELSSQVDDTKEQADLEIESEIQVNQDSSSHTPKSRKRRGAEDVSQNLDSRFGAEKEKQYRLAYLRLKKYTKTTTEDLAVRSCAKNGFQGSADFPYILTQTISSSVDKYENYPYKGFPYKRAVKLSFDTDGSVFVETSDDSNVYGICVDVDEYTETAQVVPITNNVSGYFICADSSIQCGDHLDFNSEGELVKASSNLPTSINIIALSNTYKHDFRTPAEQSDSSFSSSSDFIIHFVKVTIFGNKAIQRKS
>NC_011245.1|WP_012539236.1|15673_16234_+|DUF228-domain-containing-protein
MPDMKQLIKDYEDKRKALAAVIKGGSKEVAVRSNTFDFRNKGPSVGDGGFTSSSSNTKIENWPSKNYPYKCGVKITTNQIKANEVHYESCVQPGGSSDLYGICIDIDDYTETAQVVPITSGGYQAWLFAKDATIKRGDKIKFNDKGEAEKSSGSNTIYNAIAVEDTVSLPNNTYLVHVKFVGNSVQ
>NC_011245.1|WP_041177874.1|16255_17218_+|hypothetical-protein
MELYEEDYYEQEIIQATEEVELPKFYDWFAPEQIEEVPYKMGFFKTVEWDAFLNDNPTNVVNNYNTVSTIGFRSEVVKLNYLRLQYKFAHLKDSAVPEFTNSEYIGDVNNNYLPFGTAYELACNEIMKLITNFVLTGTVSVQKDGNRAKLLLPNMYGLLNMPYQIKEEVQAANKDKMEKIFESIKSGLSKLELGDYFDCPFMVLVDPLTSLKLVEPYTVNNNNPGILNERWQDFLIATIKAVNNRNEVTIQISNLLKNQIIIYPMNSKLLKFKPSKFMLPTPNEQIDTNSSDIAHSYIDFVLGGLLATQKTILQVEIKQS
>NC_011245.1|WP_012539239.1|17679_18096_+|DUF1506-family-protein
MHRSCSLMQVNPVRTKFAQMAESVISYFEDKKPLRLYKKRYEYNEDTASIDAIIDKDNFQEFTGVLFSINPDSIVSINESNLGDMTCLYTLYTSAQLDFEISDRISEGDLDNFHFEIISIDGSVGYLTLTLKGVGKYA
>NC_011245.1|WP_041177875.1|18088_18472_+|hypothetical-protein
MHDQFEIELEIGWFATRADIARMHEKGSRKLPIRKHLTKIANSQEFQQYIDTDYMRSKFQESIENGMNALGTAFINYYKNHVLASKIMPKLSPKTIALKSKKGSKTPQTPLVDTGLMLNSIEYRINK
>NC_011245.1|WP_012539241.1|18468_19029_+|DUF764-family-protein
MILDITTIEKCIISTLKDFTKFASIYNLSVDILNTYNHPYMSKYTVDNSNIIAVQFSDIDGLFEHNSRTGVFYDNVNEFAIHFQLYFMALTSNSDKNPHERLMLLYALFSDFLHDSSTQSFTFTPEDNCDYQKNVKFHIRHTTNMQNNGLLDINSNNSKSTYCLSQGFVANIQTKEEKVKEQNNAI
>NC_011245.1|WP_012539242.1|19018_20149_+|DUF787-family-protein
MPSDTISVNLTHSRLDLNQVSYYTPLLVYKCAKIKLNTVSPKNKILYLNVNDYEKAIGALEKEGNNGDDEFNAEKEYLKQAIQSFFAEDDKGLRAVTLAIYKDTAEAKGIKELFKRSRNSFIVFINTYASNNDGGDGLTIYKDDYTNFKDPAHFFVFATKESEVKELFKNGSNSKSKIIVIHSKGTQQLHLRFVSKYLHEASMFHAVNPYGLTFSGINPITNSEEITKLRQANINFYSHLNESGLDGFPAFKEGICLDSSPIDEIFTYDYIKYEFIAELIRIWNLNNRQNSKLSALQLSGQRDTAYSAAIACKLKEFVDAGIIVSYSKLKIQISSSAALKLFLSLSITYNYSMKGVVLNITTQDIQSYQNSLKEVE

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011251.1	31141-31165	0	1.0
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011262.1	21118-21142	0	1.0
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011262.1	28335-28359	0	1.0

1. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to position: 31141-31165, mismatch: 0, identity: 1.0

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaacttgataac	Protospacer
*************************

2. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to position: 21118-21142, mismatch: 0, identity: 1.0

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaacttgataac	Protospacer
*************************

3. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to position: 28335-28359, mismatch: 0, identity: 1.0

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaacttgataac	Protospacer
*************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011245	Borrelia duttonii Ly plasmid pl28, complete sequence	11960-11984	0	1.0
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011251	Borrelia duttonii Ly plasmid pl41, complete sequence	31141-31165	0	1.0
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011262	Borrelia duttonii Ly plasmid pl31, complete sequence	21118-21142	0	1.0
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011262	Borrelia duttonii Ly plasmid pl31, complete sequence	28335-28359	0	1.0
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_008442	Borrelia duttonii plasmid DNA, complete sequence, strain: Ly	30406-30430	0	1.0
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011255	Borrelia recurrentis A1 plasmid pl35, complete sequence	6622-6646	0	1.0
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011254	Borrelia duttonii Ly plasmid pl42, complete sequence	24920-24944	1	0.96
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024381	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-6	5585-5609	1	0.96
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011254	Borrelia duttonii Ly plasmid pl42, complete sequence	7698-7722	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011261	Borrelia duttonii Ly plasmid pl26, complete sequence	10335-10359	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024406	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-13	857-881	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024318	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1	5782-5806	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011264	Borrelia duttonii Ly plasmid pl32, complete sequence	22871-22895	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024207	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1	5854-5878	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024213	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-6	854-878	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024335	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1	5788-5812	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024353	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1	5791-5815	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024364	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-9	1836-1860	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024367	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-12	832-856	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024329	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-10	10717-10741	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024392	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence	64261-64285	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011253	Borrelia recurrentis A1 plasmid pl33, complete sequence	7943-7967	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024218	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-10	16037-16061	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024344	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-9	12158-12182	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024401	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence	63192-63216	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024405	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-1, complete sequence	16014-16038	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024373	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1	64298-64322	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024384	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-9	15840-15864	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024387	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-12	12141-12165	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP015334	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpG27, complete sequence	1545-1569	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP015333	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence	21045-21069	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP015333	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence	34455-34479	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP015333	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence	34509-34533	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP015333	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence	34563-34587	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP015333	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence	34617-34641	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024325	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-6	11234-11258	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024209	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-2	13125-13149	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP040828	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-2, complete sequence	27573-27597	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP015331	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpN31, complete sequence	29631-29655	2	0.92
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011251	Borrelia duttonii Ly plasmid pl41, complete sequence	23959-23983	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024318	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1	5902-5926	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024207	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1	5974-5998	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024335	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1	5908-5932	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024353	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1	5911-5935	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024364	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-9	1923-1947	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024392	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence	64141-64165	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011253	Borrelia recurrentis A1 plasmid pl33, complete sequence	22841-22865	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011253	Borrelia recurrentis A1 plasmid pl33, complete sequence	22928-22952	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011253	Borrelia recurrentis A1 plasmid pl33, complete sequence	23015-23039	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011253	Borrelia recurrentis A1 plasmid pl33, complete sequence	23102-23126	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024218	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-10	15950-15974	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024401	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence	24989-25013	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024401	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence	25623-25647	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024405	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-1, complete sequence	15927-15951	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024373	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1	64178-64202	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024384	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-9	15753-15777	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011260	Borrelia recurrentis A1 plasmid pl53, complete sequence	24541-24565	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011260	Borrelia recurrentis A1 plasmid pl53, complete sequence	1084-1108	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011250	Borrelia duttonii Ly plasmid pl40, complete sequence	29443-29467	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024322	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-3	1921-1945	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024210	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-3	24915-24939	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024210	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-3	25549-25573	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024337	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-2	24904-24928	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024337	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-2	25538-25562	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024356	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-2	24900-24924	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024356	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-2	25534-25558	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP014792	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpB58, complete sequence	1692-1716	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP014792	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpB58, complete sequence	1746-1770	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024375	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-2	24888-24912	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024375	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-2	25522-25546	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024379	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4	1922-1946	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024394	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2	28598-28622	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024323	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-4	23227-23251	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024323	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-4	23861-23885	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024330	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-11	597-621	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024330	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-11	1231-1255	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024396	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence	26650-26674	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024212	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5	27080-27104	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024359	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5	27115-27139	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024321	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-2	4144-4168	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024395	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-1, complete sequence	4177-4201	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024211	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-4	28284-28308	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024338	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-3	5611-5635	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024357	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-3, complete sequence	961-985	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024358	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-4, complete sequence	28696-28720	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024378	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-3, complete sequence	22239-22263	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_CP024382	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-7	335-359	3	0.88
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_011253	Borrelia recurrentis A1 plasmid pl33, complete sequence	25987-26011	4	0.84
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	232093-232117	4	0.84
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	MK562502	Shigella phage KPS64, complete genome	23241-23265	5	0.8
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	MF158041	Shigella phage Sf15, complete genome	32366-32390	5	0.8
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	MN342151	Escherichia phage vB_EcoM_3HA14, complete genome	23071-23095	5	0.8
NC_011245_1	1.1|11960|25|NC_011245|CRISPRCasFinder	11960-11984	25	NC_049857	Lactococcus phage P1048, complete genome	84312-84336	5	0.8

1. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011245 (Borrelia duttonii Ly plasmid pl28, complete sequence) position: , mismatch: 0, identity: 1.0

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaacttgataac	Protospacer
*************************

2. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011251 (Borrelia duttonii Ly plasmid pl41, complete sequence) position: , mismatch: 0, identity: 1.0

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaacttgataac	Protospacer
*************************

3. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011262 (Borrelia duttonii Ly plasmid pl31, complete sequence) position: , mismatch: 0, identity: 1.0

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaacttgataac	Protospacer
*************************

4. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011262 (Borrelia duttonii Ly plasmid pl31, complete sequence) position: , mismatch: 0, identity: 1.0

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaacttgataac	Protospacer
*************************

5. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_008442 (Borrelia duttonii plasmid DNA, complete sequence, strain: Ly) position: , mismatch: 0, identity: 1.0

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaacttgataac	Protospacer
*************************

6. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011255 (Borrelia recurrentis A1 plasmid pl35, complete sequence) position: , mismatch: 0, identity: 1.0

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaacttgataac	Protospacer
*************************

7. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011254 (Borrelia duttonii Ly plasmid pl42, complete sequence) position: , mismatch: 1, identity: 0.96

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaacttgataat	Protospacer
************************.

8. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024381 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-6) position: , mismatch: 1, identity: 0.96

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataac	Protospacer
*** *********************

9. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011254 (Borrelia duttonii Ly plasmid pl42, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
gtcagatattaaagaacttgataat	Protospacer
.***********************.

10. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011261 (Borrelia duttonii Ly plasmid pl26, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
gtcagatattaaagaacttgataat	Protospacer
.***********************.

11. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024406 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-13) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

12. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024318 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

13. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011264 (Borrelia duttonii Ly plasmid pl32, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
attagatattaaagaacttgataat	Protospacer
**.*********************.

14. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024207 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

15. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024213 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-6) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

16. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024335 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

17. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024353 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

18. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024364 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-9) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

19. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024367 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-12) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

20. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024329 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-10) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

21. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024392 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

22. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011253 (Borrelia recurrentis A1 plasmid pl33, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
attagatattaaagaacttgataat	Protospacer
**.*********************.

23. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024218 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-10) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

24. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024344 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-9) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

25. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024401 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

26. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024405 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-1, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

27. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024373 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

28. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024384 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-9) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

29. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024387 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-12) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaacttgataat	Protospacer
*** ********************.

30. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP015334 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpG27, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataac	Protospacer
*** *********** *********

31. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataac	Protospacer
*** *********** *********

32. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataac	Protospacer
*** *********** *********

33. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataac	Protospacer
*** *********** *********

34. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataac	Protospacer
*** *********** *********

35. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP015333 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpV47, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataac	Protospacer
*** *********** *********

36. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024325 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-6) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataac	Protospacer
* * *********************

37. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024209 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-2) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataac	Protospacer
* * *********************

38. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP040828 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-2, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataac	Protospacer
* * *********************

39. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP015331 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpN31, complete sequence) position: , mismatch: 2, identity: 0.92

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataac	Protospacer
*** *********** *********

40. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011251 (Borrelia duttonii Ly plasmid pl41, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
ggctgatattaaagaacttgataac	Protospacer
. * *********************

41. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024318 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

42. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024207 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

43. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024335 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

44. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024353 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

45. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024364 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-9) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

46. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024392 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

47. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011253 (Borrelia recurrentis A1 plasmid pl33, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
attagatattaaagaacttgatatt	Protospacer
**.******************** .

48. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011253 (Borrelia recurrentis A1 plasmid pl33, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
attagatattaaagaacttgatatt	Protospacer
**.******************** .

49. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011253 (Borrelia recurrentis A1 plasmid pl33, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
attagatattaaagaacttgatact	Protospacer
**.******************** .

50. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011253 (Borrelia recurrentis A1 plasmid pl33, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
attagatattaaagaacttgatact	Protospacer
**.******************** .

51. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024218 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-10) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

52. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024401 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagcacttgataag	Protospacer
*** ********** ********* 

53. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024401 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattagagaacttgataat	Protospacer
*** *******.************.

54. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024405 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-1, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

55. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024373 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

56. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024384 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-9) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

57. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011260 (Borrelia recurrentis A1 plasmid pl53, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaccttgatact	Protospacer
*************** ******* .

58. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011260 (Borrelia recurrentis A1 plasmid pl53, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattagagatcttgataag	Protospacer
***********.*** ******** 

59. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011250 (Borrelia duttonii Ly plasmid pl40, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaaagaccttgatact	Protospacer
*************** ******* .

60. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024322 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-3) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

61. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024210 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-3) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagcacttgataag	Protospacer
*** ********** ********* 

62. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024210 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-3) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattagagaacttgataat	Protospacer
*** *******.************.

63. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024337 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-2) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagcacttgataag	Protospacer
*** ********** ********* 

64. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024337 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-2) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattagagaacttgataat	Protospacer
*** *******.************.

65. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024356 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-2) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagcacttgataag	Protospacer
*** ********** ********* 

66. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024356 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-2) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattagagaacttgataat	Protospacer
*** *******.************.

67. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP014792 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpB58, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataat	Protospacer
*** *********** ********.

68. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP014792 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpB58, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataat	Protospacer
*** *********** ********.

69. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024375 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-2) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagcacttgataag	Protospacer
*** ********** ********* 

70. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024375 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-2) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattagagaacttgataat	Protospacer
*** *******.************.

71. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024379 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgatattaaagaacttgataat	Protospacer
* * ********************.

72. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024394 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-2) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataat	Protospacer
*** *********** ********.

73. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024323 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-4) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattagagaacttgataat	Protospacer
*** *******.************.

74. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024323 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-4) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagcacttgataag	Protospacer
*** ********** ********* 

75. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024330 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-11) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattagagaacttgataat	Protospacer
*** *******.************.

76. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024330 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-11) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagcacttgataag	Protospacer
*** ********** ********* 

77. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024396 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp29, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataat	Protospacer
*** *********** ********.

78. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024212 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-5) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataat	Protospacer
*** *********** ********.

79. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024359 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-5) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
atctgatattaaagaccttgataat	Protospacer
*** *********** ********.

80. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024321 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-2) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgagattaaagaacttgataac	Protospacer
* * ** ******************

81. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024395 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-cp30-1, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgagattaaagaacttgataac	Protospacer
* * ** ******************

82. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024211 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-4) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgagattaaagaacttgataac	Protospacer
* * ** ******************

83. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024338 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-3) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgagattaaagaacttgataac	Protospacer
* * ** ******************

84. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024357 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-3, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgagattaaagaacttgataac	Protospacer
* * ** ******************

85. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024358 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-4, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgagattaaagaacttgataac	Protospacer
* * ** ******************

86. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024378 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-3, complete sequence) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgagattaaagaacttgataac	Protospacer
* * ** ******************

87. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_CP024382 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-7) position: , mismatch: 3, identity: 0.88

atcagatattaaagaacttgataac	CRISPR spacer
agctgagattaaagaacttgataac	Protospacer
* * ** ******************

88. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_011253 (Borrelia recurrentis A1 plasmid pl33, complete sequence) position: , mismatch: 4, identity: 0.84

atcagatattaaagaacttgataac	CRISPR spacer
ggctgatattaaagagcttgataac	Protospacer
. * ***********.*********

89. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 4, identity: 0.84

atcagatattaaagaacttgataac	CRISPR spacer
tgcagatattaaaaaacttgttaac	Protospacer
  ***********.****** ****

90. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to MK562502 (Shigella phage KPS64, complete genome) position: , mismatch: 5, identity: 0.8

atcagatattaaagaacttgataac	CRISPR spacer
gcagggtattaaagaacttgataac	Protospacer
.. .*.*******************

91. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to MF158041 (Shigella phage Sf15, complete genome) position: , mismatch: 5, identity: 0.8

atcagatattaaagaacttgataac	CRISPR spacer
gcagggtattaaagaacttgataac	Protospacer
.. .*.*******************

92. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to MN342151 (Escherichia phage vB_EcoM_3HA14, complete genome) position: , mismatch: 5, identity: 0.8

atcagatattaaagaacttgataac	CRISPR spacer
gcagggtattaaagaacttgataac	Protospacer
.. .*.*******************

93. spacer 1.1|11960|25|NC_011245|CRISPRCasFinder matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 5, identity: 0.8

atcagatattaaagaacttgataac	CRISPR spacer
atcagatattaatgaacttgaaggt	Protospacer
************ ******** ...

2. NC_011264

CRISPR-Cas detection and classification

Crispr_ID: NC_011264_1

• CRISPR_ID: NC_011264_1
• CRISPR_location: 30254-30399
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NC_011264_1

Consensus_repeat	Method
ATAGATGGAGTTGAGAGTAGACTTAGTGCTAGAATGGA	CRISPRCasFinder

spacers of NC_011264_1

>1.1|30292|70|NC_011264|CRISPRCasFinder
TGGAGTTGAGAGTAGACTTAGTGCTAGAATGGAGAAACTAGATGTTAGAATAGATAAACTAGATGCCAAA

CRISPR arrays and Neighbor proteins around NC_011264_1

CRISPR arrays

The CRISPR arrays of NC_011264_1

>merge|NC_011264|1|30254-30399|CRISPRCasFinder
ATAGATGGAGTTGAGAGTAGGCTAGATGCCAAGATAGATGGAGTTGAGAGTAGACTTAGTGCTAGAATGGAGAAACTAGATGTTAGAATAGATAAACTAGATGCCAAAATAGATGGAGTTGAGAGTAGACTTAATGCTAGAATGGA

>NC_011264|1|1|30254-30399|CRISPRCasFinder
ATAGATGGAGTTGAGAGTAGGCTAGATGCCAAGATAGA	TGGAGTTGAGAGTAGACTTAGTGCTAGAATGGAGAAACTAGATGTTAGAATAGATAAACTAGATGCCAAA
ATAGATGGAGTTGAGAGTAGACTTAATGCTAGAATGGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_011264.1|WP_041177977.1|21052_21610_-|DUF226-domain-containing-protein	unknown	unknown	gnl|CDD|308504
NC_011264.1|WP_158298617.1|26660_26798_+|hypothetical-protein	unknown	unknown	unknown
NC_011264.1|WP_158298618.1|18470_19385_-|variable-large-family-protein	unknown	unknown	gnl|CDD|376417
NC_011264.1|WP_012539797.1|23313_24600_+|variable-large-family-protein	unknown	unknown	gnl|CDD|376417
NC_011264.1|WP_012539801.1|30726_30990_-|hypothetical-protein	unknown	unknown	unknown
NC_011264.1|WP_012539798.1|27664_28564_+|hypothetical-protein	unknown	unknown	unknown
NC_011264.1|WP_049752341.1|26788_27043_+|variable-large-family-protein	unknown	unknown	gnl|CDD|376417
NC_011264.1|WP_012539580.1|20324_21077_-|ParA-family-protein	unknown	unknown	gnl|CDD|224113
NC_011264.1|WP_012539802.1|31149_31419_+|hypothetical-protein	unknown	unknown	unknown
NC_011264.1|WP_041177975.1|28930_29206_+|hypothetical-protein	unknown	unknown	unknown
NC_011264.1|WP_012539794.1|19702_20302_-|chromosome-replication/partitioning-protein	unknown	unknown	gnl|CDD|376591
NC_011264.1|WP_041177973.1|21638_22283_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_011264.1|WP_049752341.1|26788_27043_+|variable-large-family-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	0.000119129
NC_011264.1|WP_041177977.1|21052_21610_-|DUF226-domain-containing-protein	gnl|CDD|308504	pfam02890, DUF226, Borrelia family of unknown function DUF226. This family of proteins are found in Borrelia. The proteins are about 190 amino acids long and have no known function.	5.26525e-38
NC_011264.1|WP_158298618.1|18470_19385_-|variable-large-family-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	2.305e-27
NC_011264.1|WP_012539580.1|20324_21077_-|ParA-family-protein	gnl|CDD|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	6.1374e-49
NC_011264.1|WP_012539797.1|23313_24600_+|variable-large-family-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	3.47106e-24
NC_011264.1|WP_012539794.1|19702_20302_-|chromosome-replication/partitioning-protein	gnl|CDD|376591	pfam01672, Plasmid_parti, Putative plasmid partition protein. This family consists of conserved hypothetical proteins from Borrelia burgdorferi the lyme disease spirochaete, some of which are putative plasmid partition proteins.	4.28623e-24

Protein sequences

>NC_011264.1|WP_041177975.1|28930_29206_+|hypothetical-protein
MKDIKFPKKKKGFRDEEIDMEAFIEQVDANIEKMDREFKEFQRRYGSDKSFEDWIEYEEKEQKLKDEKIQLRVKNLSSRFAKKLNSKIIAK
>NC_011264.1|WP_012539798.1|27664_28564_+|hypothetical-protein
MKQKDFIISIMFVVINLLLISCGSPKKYVSSSIVISSNTTPEQKNMQKEQKEKEKEKEIADIKREIPNKVMDILKIHYGKSWDEFAQIIQVVGPGLVSPNEIFNMFIIEDASKNILYTENVILRNEFYLALEYDLNLMAPFIDIYYNIDNGSTFYVSESSLRCKSFMNEFKNNIIEQSRNYAKAYYIDVYEALKAKQNKLDMLSLQDLKLLKTKLEKLESSKRELITGVIRKFVNDYNNDIATEFFIIQLNGELRTRVFDLHKVQPYFEEKFENFEAKCSVVIALANEIKGVLDKIKIN
>NC_011264.1|WP_049752341.1|26788_27043_+|variable-large-family-protein
MVLGIFSVFGSAIGDTLGFSVVKSGYKRDKIVEYFEKIKKGLEVINEKLQGLAGEISGAKNVGVNTIGVVKGSIKEANEVFETS
>NC_011264.1|WP_158298617.1|26660_26798_+|hypothetical-protein
MKENECKAVSTKTDGEQYKTIGKLFEKRDNVSEAKAAVASAVVWF
>NC_011264.1|WP_012539797.1|23313_24600_+|variable-large-family-protein
MKKPLGLLIMINLFMGCDSNSILGLGKLIDKHKDTGSNILGLGKLSDESKDALLDSALTLGQEVLQVGKEIAPKVVNMGEEVVSGALELGQEMLQMGQNLGEVIVPGAIQAGQVILPGVLHAGQIVVPGLLETGKVIGRGFQDIFWFVGNVVGDMLEDLLVKADIKSTDKRSKVKEHFEKVKSQLEATKNKVDGSSGVVGNDTVIDKLITAVGKLANAVGDDKIDIGAISDSSTKASIVSDRASVQSIIEGIKEIVDIAKKSGVNVSTEDAGATVTASSQTDATAALNSGKDGAQEGAGAKLAQEVSKADPWAMIDKICNANVKDGNLDGNNSNAGELVTGFVNTPNGIGAKTNADFAAAVALKAMSKDGKFAVKDNDSNSEDANKIKNAAAEAVNKLLDTLGLIIRRTVRMEIGKVDSKVNKVVAKK
>NC_011264.1|WP_041177973.1|21638_22283_-|hypothetical-protein
MHTSQKVQNYTQLSKKYQIRYYKIVSIIRYFQKNTIKYNQTIILNTLNRFLTKDELKIITLRTLRKDLALLCNKGIIQKTLLRLGEGNGSYIRYTVNKYSQNNLKRFIENKQDIIEHDANAIYKFTKETQKKYFKNIGYKTYKSKNVTKNVSHNIINNKDINIKDTKDINLLISNTSKWKTMRYLDKIEENKNKKRYEEAIIKTKKWLESEKNK
>NC_011264.1|WP_041177977.1|21052_21610_-|DUF226-domain-containing-protein
MICQLKNLESKPKKNFNDSFSKIEKEDARTIYHTKIFNDLFAFGVNRREEDKFFVALRGVFNSDKKSTFRLFSIEKEEDRFLGMFYGFKRLKTSFILRYKDDTKKSDVTTKIYKPYYIEFRFKKGSIFCYIKAIHSLIKKEKFTKKYVQTLLERIMKLEDEVYKFYDKRLPDGGIITKWIEKNQR
>NC_011264.1|WP_012539580.1|20324_21077_-|ParA-family-protein
MDRKKPEVITIASIKGGVGKSTSAIIFATLLSKKYKVLLVDIDTQASTTSYYHEKLIENDIDVVNINIYRVLNETLDINDSIVNIDNNLDFIPSYIHLHKFIREAIPLKELRLKECLFFLQNEYDYVVLDTNPSLDATLANALICSGYIIVPMTAEKWAVESLELIEFYMKELRINLPIFILITRFKNNNTHKELLEYIQSKRGFLGFIHEREDLNKRISKNDVFDLNKDYIKDYGSALESFLTKKLIVR
>NC_011264.1|WP_012539794.1|19702_20302_-|chromosome-replication/partitioning-protein
MKNVVLSNRVLHANKDVKLINLKQESLIRYNELKEKLKQNARKEIYYKIENIRILKEIKDNEYYKLDGHKHFDSFIKDYRMAKTQVYAYLRLANAMEKGILAEQYIIENGINESLAIIKNKKTIKTKKIRRSSINSLSFKLKNQASYDFYKNNVKFIAFMLDTIFLNDRNYLQKLFQKYSNLHLDKKVVNIADLLEKFQ
>NC_011264.1|WP_158298618.1|18470_19385_-|variable-large-family-protein
MFGVFGSAVGDALGFNIVKSDDNRSKVGEHFKTIGDGLKSTKDKLDELSKKIVATPNADTKGVEAVIQGSSAIITKLITSVTKLADSVGNAEITDGIDAAGSAPVEEVSVKAFIEGIKSIVETVENSGVKIEKGNAGVVVTNENGPKALVHNVRATAGDATKLAAEVAKADPWAMIDKIKNAKIKNAAPAANDDAGQLATATNVANNDGTAATNADLAAAVALKAMIKGGKFNQPAQNEDGALKAAVSSAVNKVLGILDVILRKVINLEINKIKEAINGIKYSDTLGINIPESDTIQTPATKKL
>NC_011264.1|WP_012539801.1|30726_30990_-|hypothetical-protein
MINILYSIKLQRSIKVNLPKINKDINLKQQRQIFNSESKKQHKKFNDDKILEFIKSNLENDNRTIKSVRKINQNTNLSKYKINIYQN
>NC_011264.1|WP_012539802.1|31149_31419_+|hypothetical-protein
MKDIKFPRKKKGFRDEEMDMEAFIAQVDANIEAMDREFKEFQKRYGSDKSFEDWIEYKEKERRIKEEKIQLRVENLSARFAKKIKCQSC

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011264_1	1.1|30292|70|NC_011264|CRISPRCasFinder	30292-30361	70	NC_011264	Borrelia duttonii Ly plasmid pl32, complete sequence	30292-30361	10	0.857

1. spacer 1.1|30292|70|NC_011264|CRISPRCasFinder matches to NC_011264 (Borrelia duttonii Ly plasmid pl32, complete sequence) position: , mismatch: 10, identity: 0.857

tggagttgagagtagacttagtgctagaatggagaaactagatgttagaatagataaact	CRISPR spacer
tggagttgagagtagacttagtgctagaatggagaaactagatgttagaatagataaact	Protospacer
************************************************************

3. NC_011251

4. NC_011226

5. NC_011262

6. NC_011256

CRISPR-Cas detection and classification

Crispr_ID: NC_011256_1

• CRISPR_ID: NC_011256_1
• CRISPR_location: 24891-25150
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 4 spacers

Consensus repeat of NC_011256_1

Consensus_repeat	Method
ANNNNNAATNTNNNNNTTTAAGTTATTTTCAA	CRT

spacers of NC_011256_1

>1.1|24923|22|NC_011256|CRT
CAGTATCAATTTTATTATTGAG
>1.2|24977|22|NC_011256|CRT
CAGTATCAATTTTATTATTAAG
>1.3|25031|34|NC_011256|CRT
TAATATCAATTTTATTATCAAGTTCATTAAATTT
>1.4|25097|22|NC_011256|CRT
CAGTATCAATTTTATTATTAAG

CRISPR arrays and Neighbor proteins around NC_011256_1

CRISPR arrays

The CRISPR arrays of NC_011256_1

>merge|NC_011256|1|24891-25150|CRT
AGTGTCAATTTTAATATTTAAGTTATTTTCAACAGTATCAATTTTATTATTGAGATCTCTAATATCTGATTTTAAGTTATTTTCAACAGTATCAATTTTATTATTAAGATCTCTAATATCTGATTTTAAGTTATTTTCAATAATATCAATTTTATTATCAAGTTCATTAAATTTAGTGTCAATTTTAATATTTAAGTTATTTTCAACAGTATCAATTTTATTATTAAGATCTCTAATATCTGATTTTAAGTTATTTTCAA

>NC_011256|1|1|24891-25150|CRT
AGTGTCAATTTTAATATTTAAGTTATTTTCAA	CAGTATCAATTTTATTATTGAG
ATCTCTAATATCTGATTTTAAGTTATTTTCAA	CAGTATCAATTTTATTATTAAG
ATCTCTAATATCTGATTTTAAGTTATTTTCAA	TAATATCAATTTTATTATCAAGTTCATTAAATTT
AGTGTCAATTTTAATATTTAAGTTATTTTCAA	CAGTATCAATTTTATTATTAAG
ATCTCTAATATCTGATTTTAAGTTATTTTCAA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NC_011256.1|WP_049752327.1|20836_21232_-|hypothetical-protein	unknown	unknown	gnl|CDD|369525
NC_011256.1|WP_041177945.1|31743_32271_+|Mlp-family-lipoprotein	unknown	unknown	unknown
NC_011256.1|WP_012539646.1|24128_24671_+|hypothetical-protein	unknown	unknown	unknown
NC_011256.1|WP_012539649.1|27637_28708_-|variable-surface-antigen-VlsE	unknown	unknown	gnl|CDD|376417
NC_011256.1|WP_041177944.1|29494_30067_-|hypothetical-protein	unknown	unknown	unknown
NC_011256.1|WP_041177943.1|14967_15753_-|hypothetical-protein	unknown	unknown	unknown
NC_011256.1|WP_012539641.1|19755_20130_-|hypothetical-protein	unknown	unknown	unknown
NC_011256.1|WP_012539638.1|15758_16538_-|hypothetical-protein	unknown	unknown	unknown
NC_011256.1|WP_158298612.1|28908_29079_-|variable-large-family-protein	unknown	unknown	gnl|CDD|376417
NC_011256.1|WP_162465379.1|16537_19204_-|right-handed-parallel-beta-helix-repeat-containing-protein	unknown	unknown	gnl|CDD|379079
NC_011256.1|WP_041177948.1|36500_37607_+|hypothetical-protein	unknown	unknown	gnl|CDD|367076
NC_011256.1|WP_041177947.1|34741_34951_-|hypothetical-protein	unknown	unknown	unknown
NC_011256.1|WP_041177946.1|32433_32853_+|Mlp-family-lipoprotein	unknown	unknown	gnl|CDD|308750
NC_011256.1|WP_012539645.1|22524_24132_+|hypothetical-protein	unknown	unknown	gnl|CDD|367076
NC_011256.1|WP_012539652.1|34966_36319_-|DUF244-domain-containing-protein	unknown	unknown	gnl|CDD|281152
NC_011256.1|WP_012539640.1|19353_19740_-|lipoprotein	unknown	unknown	gnl|CDD|308571
NC_011256.1|WP_012539644.1|21504_22143_+|hypothetical-protein	unknown	unknown	gnl|CDD|237177
NC_011256.1|WP_081434538.1|34280_34496_-|DUF261-family-protein	unknown	unknown	gnl|CDD|281224
NC_011256.1|WP_041177953.1|20154_20847_-|DUF261-family-protein	unknown	unknown	gnl|CDD|281224
NC_011256.1|WP_012539648.1|25488_26298_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NC_011256.1|WP_049752327.1|20836_21232_-|hypothetical-protein	gnl|CDD|369525	pfam07798, DUF1640, Protein of unknown function (DUF1640). This family consists of sequences derived from hypothetical eukaryotic proteins. A region approximately 100 residues in length is featured.	0.00552756
NC_011256.1|WP_012539652.1|34966_36319_-|DUF244-domain-containing-protein	gnl|CDD|281152	pfam03112, DUF244, Uncharacterized protein family (ORF7) DUF. Several members of this family are Borrelia burgdorferi plasmid proteins of uncharacterized function.	3.81241e-09
NC_011256.1|WP_012539649.1|27637_28708_-|variable-surface-antigen-VlsE	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	5.24223e-56
NC_011256.1|WP_041177946.1|32433_32853_+|Mlp-family-lipoprotein	gnl|CDD|308750	pfam03304, Mlp, Mlp lipoprotein family. The Mlp (for Multicopy Lipoprotein) family of lipoproteins is found in Borrelia species. This family were previously known as 2.9 lipoprotein genes. These surface expressed genes may represent new candidate vaccinogens for Lyme disease. Members of this family generally are downstream of four ORFs called A,B,C and D that are involved in hemolytic activity.	4.05834e-22
NC_011256.1|WP_081434538.1|34280_34496_-|DUF261-family-protein	gnl|CDD|281224	pfam03196, DUF261, Protein of unknown function, DUF261.	1.23947e-32
NC_011256.1|WP_012539640.1|19353_19740_-|lipoprotein	gnl|CDD|308571	pfam02999, Borrelia_orfD, Borrelia orf-D family. Borrelia burgdorferi supercoiled plasmids encode multicopy tandem open reading frames called Orf-A, Orf-B, Orf-C and Orf-D. This family corresponds to Orf-D. The putative product of this gene has no known function.	3.17979e-19
NC_011256.1|WP_158298612.1|28908_29079_-|variable-large-family-protein	gnl|CDD|376417	pfam00921, Lipoprotein_2, Borrelia lipoprotein. This family of lipoproteins is found in Borrelia spirochetes. The function of these proteins is uncertain.	1.39528e-06
NC_011256.1|WP_162465379.1|16537_19204_-|right-handed-parallel-beta-helix-repeat-containing-protein	gnl|CDD|379079	pfam13229, Beta_helix, Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.	2.59972e-07
NC_011256.1|WP_012539645.1|22524_24132_+|hypothetical-protein	gnl|CDD|367076	pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded by an open reading frame in plasmid borne DNA repeats of Borrelia species. This protein is known as ORF-A. The function of this putative protein is unknown.	1.99395e-15
NC_011256.1|WP_041177948.1|36500_37607_+|hypothetical-protein	gnl|CDD|367076	pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded by an open reading frame in plasmid borne DNA repeats of Borrelia species. This protein is known as ORF-A. The function of this putative protein is unknown.	4.56442e-64
NC_011256.1|WP_012539644.1|21504_22143_+|hypothetical-protein	gnl|CDD|237177	PRK12704, PRK12704, phosphodiesterase; Provisional.	9.5003e-05
NC_011256.1|WP_041177953.1|20154_20847_-|DUF261-family-protein	gnl|CDD|281224	pfam03196, DUF261, Protein of unknown function, DUF261.	8.39096e-30

Protein sequences

>NC_011256.1|WP_012539646.1|24128_24671_+|hypothetical-protein
MKFTLKYLIRRLYLRRDRFWQTYMSDEIQSKKNDGTIVNFPILNSDDIDYEYVSSYVKDWISKKYVDNSDIKIQLVDNLYYNCEIRKYSLLAGFLETLHRDYKEIFLGNLERKKIVEPKIKLQPEDQSGEEKDQKDQSVDQAEERVVQQDQAQAKAATKAKAAKKPATKPGVIQPEVIQS
>NC_011256.1|WP_012539645.1|22524_24132_+|hypothetical-protein
MLSIPKDNKNFKFQDPKGQINAILKSLVELNIHKDPNNSQTIRMSYVKLQIIKMLKRYKRIIKVYWAINTKNTNYKQSMGVEEYSACDIQKIVLKLLENDSAKKVCKRTLERDIKLLNEMGLIKSKIRKLGEQKGSIAYYVQNMELAHVHKDIILEYLIQLLTENLHDKKIIGDFDADIKNTTFNYTNLEKFGILSKFKECKSLIKMSHVQTPDVINKANISNINKENSKNSLEKNSAKSLSCEKPKSGEQKSEKVRFKRIGVKTRLIDVHKISRNYMQQVKELSNNDSTYINALLNLETAINEYGKEYDIEDILKHFLKQFGNRYKYKVWMMMKRKDGVINDYDLIWEGRFKDWYSHKYKKNYTTTKEKYGEKIRLAGKNFEFNASKNVKDEEEEKKEKEKTEKERKLQLKRQQEYIERLFRQEEQERKERIRRREEEKAKLRMEVKEEIRSYVGSIENGDSSDDIAKLYPLYEESRGDNIAVRPPRPQINTNFEGFKTTKGLSLASLGIMLQYQEQDPDKDKILMQNAKGETI
>NC_011256.1|WP_012539644.1|21504_22143_+|hypothetical-protein
MIKVGTIQLYKLGEVVKILKENFNFTIDNPTLCRKASKLNAYVIYNEKKYIPKDIIYHLTANMRYLETKINTQKIIENKIESIKQDISTYDKKHKINPLTAIQRIKTNNNNTTTFIKAFLELTEEIKNIKEETQKEIKNIKEETQKEIKNIKEETQKEIKNKDEEIFTLKQIIQNIQKQTQINLNKELISTINNPIYKKSKNNFYITNKKNI
>NC_011256.1|WP_049752327.1|20836_21232_-|hypothetical-protein
MANNLKKQLNIIGTVVTGIVICVSGLGTYAFQGFLAELKKDLLEELRVESENRLKNEFESLKNFFKEDVKKDIQKLNLESKEMISEVETLLFKERLKIKLAFKEELNKCFDSLKRVGEEVNRVGEEANDEK
>NC_011256.1|WP_041177953.1|20154_20847_-|DUF261-family-protein
MKNKLFVFLYDFAYKLLKDHFIKKYKSELLESAVPLKNSSYQVYEKIKEIEKHRLVVPFQYNFKEQNSAICKFGCYFLCILFIAFVVKEIKDKIEKCFDKFEVDLIFKSLASAGCLKDANSYVLDPNLIFKSLGIGDDIHYLNVHYSPTEYEPDSCDILIGKYKDSKSDLYHFVIVDNDLNSIIWDSLGSSKAVNDGVLESLRVFKIIDSSIVSDVRQRLALYREQFNKL
>NC_011256.1|WP_012539641.1|19755_20130_-|hypothetical-protein
MSAIRSVNKLFDAVVAKDSLLEELDGLVGESNTNLVREGMKLTSNILSFIYYIKNEIAKSNEKKRAFEIFDSKLQGVLDVSIAACRAIEDGENWDEYNRLIKLRGQIANEILQKFKSESVNHYR
>NC_011256.1|WP_012539640.1|19353_19740_-|lipoprotein
MNRFVVNKSYFLSLLLVVIFFSCKHIPDLPVQPALLHKNDPVSLGIDEGALFKYALSLNLWLIDAKSYVARYYKRDKFPYFEDFDTTYKDNSELEIAERIAYYKRYIQGTKPIVVSVYRKYTQLYLEE
>NC_011256.1|WP_162465379.1|16537_19204_-|right-handed-parallel-beta-helix-repeat-containing-protein
MISSDDDSDSTDSDSTDSDSTDSGSSDSDSTDVTGDILDEEENYCNLSIIFFTDEGQFFDLTPYANISSISLELKIVDPTLKTATSSFKFDAGGLSNEFLDFLFFRKEDVYVQVKDGKKPLFKGILEKFFNREVLNSTQTINFVVNDYSKLLNIVFEKPIQFPINFNPDWLYVYNPLIKEQSLVHLILGKTKLNDSLDDDRSESILNRVPAVIIDEGEDIQTILSALLYEFGYAYTFTGDGKLQILPIWKSEVIKKDVAYCSIDANSYVLSKSSSSSYDSNRVIWREGKFQTKEESISQKRPLYSAPFQNYGGSYYVAVLQKGVVYPDFADKIGSVVYQEYDPKWFDTAYKWDFTRKEVWHNHYALNEHLAVVSTHNLETRFSADSDIKLVHEEYYPTKARIWFKNTSSSQGSRYIYYVDIYGDVFYTTARNTLQTDNADDFYSKRFEYSTRFIFDSGSAVRLFEFLTNLRVKGHTIVNFRSIQELDLTDFVRLKFEDSGFEHFFLILSKKITGFDMNIRLYEYEGLTWGDYTHYDYLTTSQHIGAQSHLEAVSEVVVAPFNCQFLADDNFQKPHFVATGFKDEVTIQEAFEFAKRSSTSKIRLLPGDFYLYGSLDISNLQLRGDYGVVLRPSGFVKDVLVANRSCKLSDMTILHQPISEFWIKGGSLNDSEHLNSYLEDKEFIGAPDLRLCSSYKVREEERTSVYATDASFLYLKNIIFRNNQALALKVSGVQKILFENVIFKDTNQGFVVDDVSNMTLIGVEIDSNKNASVASGLNVIIRGGVIKTNENGLHLKQFSSIKVNAVEFSNNKGVAFNISDIVNARLSENNFIENEVGLKSSSFVDLLVKDFFVKNELGISLTKKSDVESRIVDLSTYQENLKDKEEAA
>NC_011256.1|WP_012539638.1|15758_16538_-|hypothetical-protein
MAISDDDFEDIKKRLQTDNVKIQFGVGNMEQAKTYVGKLGEPIVVEDRGLFAICDGKSSENRKYYPINKGLPPVLDDTLDSYIQDLVERCLENTYPGFLTAEFAREGSHLTRSKLIEAFEATKKFCLPDGRSLPEGCFVREKFGIYSAPSLSGRFLRHYDPHGSYDYVRSIGDTQSDSFQKHDHSINRDSINFDGKLVRSFDQLYKTGDWSTGDYRFVYNMRLGDYISKYDFPSYTEYYGDSETRPVNLAYVSFYRYDW
>NC_011256.1|WP_041177943.1|14967_15753_-|hypothetical-protein
MSISQKDYEEIKSRLSDKSTRIQFGIGSYLDSKGYTGSIGEPIVLKDKDVFGICDGSSIANRRYYPMNKDIPSILDDNLDAVLEHMVDFFIEKVAVGTLTSKFPVEGSKLNRSKLIETFSNTNKFCLPDGRSLPSNCYATRVLGITSAPSLSGRFLRQYDASNSRSLGDTQGYALKNHQHRINYERVNYGYGQNLFKEAYTNSKGFSDSWYWKDGSYGFVHNLKLGDPIYSHRFSRYTGYEGSSETRPKNLAYLWFFRYDL
>NC_011256.1|WP_012539648.1|25488_26298_-|hypothetical-protein
MISIKKFFKNIKHQKNVKQTFNNSTNNIIEINPKEIINFCKNHILISNSTELKAIGILLASGIPLSKFTNKNFTITNYTDDTITYRLSSNLQIRKHTLVNSKLIINAIYSLKEHNFNIITWKLNSIIKKLFLESTTTKHLECIYYVISNSLNKKDNFYSYEPISKNPKYKSIKLVNKTTPLKSHKNLVFINSFQNLRLHTANLLFYKKSNNKLQSTIANLIESFFLDPNSNKNIHNLKSHINLNLKQLGISYKNTHKMQKQIFSNTLLS
>NC_011256.1|WP_012539649.1|27637_28708_-|variable-surface-antigen-VlsE
MNKEKKGEGKVRVILLMMMMVMMGCNSGGVKGEGTGGGDGRGLSGAMMEVGRSAERVFYAFIELMSDTLGLKVTKDTNRSDVAGYFYSLGGKLGEASNELEKVASKVTSGVDKSDASKNSIRVVVDASKEVLSSLKGHLESLKDIGDSEKVGVSVSQNQGVAAAALELKKAYNAFKGIVGTAGKEGVAKPQAGETAVKVNNADNKDGVKILATDQGPGAAVGEKAAAIVSSVSGEEMLASIVASGENDQALGGSDADAATSTLKFALGGNKDNLAKDVAKAAAVAGGIALRSLVKGGKLAAHSSDDDKIAQLVGVSAVNKLLGAVEEIVKKTVKNVLEKVKEEVDKAREPKAVGQQ
>NC_011256.1|WP_158298612.1|28908_29079_-|variable-large-family-protein
MEVFVSFGDMTTGILGIKAGIKKSEIVAYFSKIAISNTVDEGLKEINKLLGEIKQG
>NC_011256.1|WP_041177944.1|29494_30067_-|hypothetical-protein
MEYMQMEPVITRQMVLNELVKAGINREIADDLSYRYYKNELTTKDLQYLENNFNLKLEILERGLKAEIRELDTKIDTVENNLNIKIDIKFTELDNKIDAKFTELDNKIDVKFNELDNKIDTVRKDMEVNKMELDTKIDIKFNELDTKIDKFASDVKGTFKLHAWMFGTIITINVGIFIALISMLYALFIK
>NC_011256.1|WP_041177945.1|31743_32271_+|Mlp-family-lipoprotein
MSTEEKNKLNALIYGLNMTIKRYDNIYKAKDTQTVENDIKRYNKFHNWIFNDPAQIQKQKELINAFSYAYDFIDDKRKKLASHKYKSTEQYIKDSFHFFHNKEYQKSHTYDPSWYGRNKNDLTNYINIYFLSIIMKSISRTNEHATNEEIFQVMKKELKNKESYTYQNSLSLWKD
>NC_011256.1|WP_041177946.1|32433_32853_+|Mlp-family-lipoprotein
MKIINFTLILLLLMSSCEQNNNTNKGIKSRHKRDLEQQVEAQKTPEENLREKLSESQIKGLDFLKEVLGSGSDFNNFLNADESKIKDALDHIQSELAKCTGDNAEQQKTTFKEVVKGALEGGLDNLKGQAASTCGQGNQ
>NC_011256.1|WP_081434538.1|34280_34496_-|DUF261-family-protein
MRINCYILNLCRILSVFGIKRDVRVEDKDYKCLKDEFEISEVKIKNNIGSHFMATNNTEVLYDPLFLKDRG
>NC_011256.1|WP_041177947.1|34741_34951_-|hypothetical-protein
MVVHVIIFILIILYRMLKFIYKCFRNIIKKYVYDYHKTKEYNEYLGNLYCDLQIMEIRRRLYDDGGFDV
>NC_011256.1|WP_012539652.1|34966_36319_-|DUF244-domain-containing-protein
MSKNNITEINNGVKRMNQQDLYTQQVIKGLEAFIPESDNNKQTNISKMSKIGRKLPGIKKNEYFKFNSKEDFSIQRGTLTRFGASEVGSIFLGVDAASELIISRVLKSFRKEVPYKDNLHIKKGKALENLGFDEFLRIYFDNIQVLHKNKYANGIDKYNYFKRVGLGDNLVGATIDGWFVNNQGEAELLEIKCDDNNYLTSAITEYNQTGNFLDSKYFFKYYVQAQVQLACTGLSKCNLFFLISDEPINCVIERNNGVIGIVMIYIAALDMEVGRICNIIKNDNSIDLANIDIEDLTNHIKLFLQDSQYYSSLTELNYKDEFINFINIVNLNIGSEERELLEKHLVDIQSKQTEIEKKEKENAKELYALTKQDKDVLKDIFGKLSMEFSLTDNIVYRLGKNIFALNAGKRAIKDRFKLITDHYDYYDINDISSRRKSSISNPLSFTSYAI
>NC_011256.1|WP_041177948.1|36500_37607_+|hypothetical-protein
MGSTKRPINNKYQHKLIVLISTLNYINSHFKQYNQNKILYYFNNNLNNNGQKKATLKTLQSYLYKLEKEFHVTSNYYRHLGENCGTEIHYKLRFSKKVCHYKINRHFKEKKEDRFQQRANLYHQQTCTNNGSLKKNGSAEKWECINNNSNNNKKKKELEKIERENAQLEKYIKKCEFKDDKYLSILNLETTKEIKIEKLIELKKEENKRERERNKNNRLIGRQQELEKTLAETKEVFKKEGYNEKQLEIEIQKAYDKYKNKPHFIVESSKYGDLGQIVKRIKKTVECKKKGKKEDYKQIRNNIFSILLDQLKNKVEVKVLAPILRNYLSNQIDLKYSQVFNNHYYYEILEMVEGKEHLRIAEYEKIVD

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011226.1	415-436	0	1.0
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011248.1	34730-34751	0	1.0
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011248.1	34817-34838	0	1.0
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011248.1	34904-34925	0	1.0
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011256.1	25151-25184	0	1.0
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011226.1	469-502	0	1.0
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011226.1	535-568	0	1.0
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011248.1	34730-34751	0	1.0
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011248.1	34817-34838	0	1.0
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011248.1	34904-34925	0	1.0
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011248.1	34730-34751	1	0.955
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011248.1	34817-34838	1	0.955
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011248.1	34904-34925	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011226.1	415-436	1	0.955
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011256.1	24857-24890	1	0.971
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011256.1	25184-25217	1	0.971
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011226.1	415-436	1	0.955
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011262.1	21068-21101	2	0.941

1. spacer 1.1|24923|22|NC_011256|CRT matches to position: 415-436, mismatch: 0, identity: 1.0

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattgag	Protospacer
**********************

2. spacer 1.2|24977|22|NC_011256|CRT matches to position: 34730-34751, mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

3. spacer 1.2|24977|22|NC_011256|CRT matches to position: 34817-34838, mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

4. spacer 1.2|24977|22|NC_011256|CRT matches to position: 34904-34925, mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

5. spacer 1.3|25031|34|NC_011256|CRT matches to position: 25151-25184, mismatch: 0, identity: 1.0

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatatcaattttattatcaagttcattaaattt	Protospacer
**********************************

6. spacer 1.3|25031|34|NC_011256|CRT matches to position: 469-502, mismatch: 0, identity: 1.0

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatatcaattttattatcaagttcattaaattt	Protospacer
**********************************

7. spacer 1.3|25031|34|NC_011256|CRT matches to position: 535-568, mismatch: 0, identity: 1.0

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatatcaattttattatcaagttcattaaattt	Protospacer
**********************************

8. spacer 1.4|25097|22|NC_011256|CRT matches to position: 34730-34751, mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

9. spacer 1.4|25097|22|NC_011256|CRT matches to position: 34817-34838, mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

10. spacer 1.4|25097|22|NC_011256|CRT matches to position: 34904-34925, mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

11. spacer 1.1|24923|22|NC_011256|CRT matches to position: 34730-34751, mismatch: 1, identity: 0.955

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
*******************.**

12. spacer 1.1|24923|22|NC_011256|CRT matches to position: 34817-34838, mismatch: 1, identity: 0.955

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
*******************.**

13. spacer 1.1|24923|22|NC_011256|CRT matches to position: 34904-34925, mismatch: 1, identity: 0.955

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
*******************.**

14. spacer 1.2|24977|22|NC_011256|CRT matches to position: 415-436, mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattgag	Protospacer
*******************.**

15. spacer 1.3|25031|34|NC_011256|CRT matches to position: 24857-24890, mismatch: 1, identity: 0.971

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatttcaattttattatcaagttcattaaattt	Protospacer
**** *****************************

16. spacer 1.3|25031|34|NC_011256|CRT matches to position: 25184-25217, mismatch: 1, identity: 0.971

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tagtatcaattttattatcaagttcattaaattt	Protospacer
**.*******************************

17. spacer 1.4|25097|22|NC_011256|CRT matches to position: 415-436, mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattgag	Protospacer
*******************.**

18. spacer 1.3|25031|34|NC_011256|CRT matches to position: 21068-21101, mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatatctattttgttatcaagttcattaaattt	Protospacer
******* *****.********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011226	Borrelia duttonii Ly plasmid pl15, complete sequence	415-436	0	1.0
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	24923-24944	0	1.0
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	34730-34751	0	1.0
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	34817-34838	0	1.0
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	34904-34925	0	1.0
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	24977-24998	0	1.0
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	25097-25118	0	1.0
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	25031-25064	0	1.0
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	25151-25184	0	1.0
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011226	Borrelia duttonii Ly plasmid pl15, complete sequence	469-502	0	1.0
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011226	Borrelia duttonii Ly plasmid pl15, complete sequence	535-568	0	1.0
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	34730-34751	0	1.0
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	34817-34838	0	1.0
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	34904-34925	0	1.0
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	24977-24998	0	1.0
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	25097-25118	0	1.0
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	25217-25238	1	0.955
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	24977-24998	1	0.955
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	25097-25118	1	0.955
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011245	Borrelia duttonii Ly plasmid pl28, complete sequence	11889-11910	1	0.955
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	34730-34751	1	0.955
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	34817-34838	1	0.955
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	34904-34925	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	24923-24944	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26413-26434	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024218	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-10	4302-4323	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011226	Borrelia duttonii Ly plasmid pl15, complete sequence	415-436	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	813493-813514	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024405	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-1, complete sequence	4271-4292	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024364	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-9	13580-13601	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024368	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-13	7545-7566	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP015336	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence	25141-25162	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP015336	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence	25228-25249	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP015336	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence	25315-25336	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP014792	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpB58, complete sequence	19512-19533	1	0.955
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024384	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-9	4098-4119	1	0.955
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	24857-24890	1	0.971
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	25184-25217	1	0.971
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	24923-24944	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26413-26434	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024218	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-10	4302-4323	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011226	Borrelia duttonii Ly plasmid pl15, complete sequence	415-436	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	813493-813514	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024405	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-1, complete sequence	4271-4292	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024364	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-9	13580-13601	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024368	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-13	7545-7566	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP015336	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence	25141-25162	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP015336	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence	25228-25249	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP015336	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence	25315-25336	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP014792	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpB58, complete sequence	19512-19533	1	0.955
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024384	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-9	4098-4119	1	0.955
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NZ_CP024404	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence	571-592	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NZ_CP024404	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence	736-757	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011258	Borrelia recurrentis A1 plasmid pl37, complete sequence	16411-16432	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011260	Borrelia recurrentis A1 plasmid pl53, complete sequence	32028-32049	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NZ_CP024365	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10	588-609	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NZ_CP024365	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10	753-774	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26413-26434	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NZ_CP024220	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12	12500-12521	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NZ_CP024220	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12	12665-12686	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NZ_CP024343	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8	12499-12520	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NZ_CP024343	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8	12664-12685	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NZ_CP024386	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11	12539-12560	2	0.909
NC_011256_1	1.1|24923|22|NC_011256|CRT	24923-24944	22	NZ_CP024386	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11	12704-12725	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	25184-25205	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	25217-25238	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26611-26632	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26314-26335	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26512-26533	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024318	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1	69524-69545	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024392	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence	523-544	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024404	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence	571-592	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024404	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence	736-757	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011245	Borrelia duttonii Ly plasmid pl28, complete sequence	11889-11910	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011254	Borrelia duttonii Ly plasmid pl42, complete sequence	7805-7826	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024207	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1	69595-69616	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024220	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12	12500-12521	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024220	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12	12665-12686	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024335	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1	69533-69554	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024343	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8	12499-12520	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024343	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8	12664-12685	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP019365	Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence	11976-11997	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP019365	Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence	15588-15609	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP019368	Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence	4329-4350	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024353	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1	69535-69556	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024365	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10	588-609	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024365	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10	753-774	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_021183	Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence	25002-25023	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024373	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1	556-577	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024386	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11	12539-12560	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP024386	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11	12704-12725	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NZ_CP015633	Borrelia turicatae strain BTE5EL plasmid lp31	26101-26122	2	0.909
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024322	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-3	25632-25665	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024398	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp27, complete sequence	24628-24661	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024398	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp27, complete sequence	24661-24694	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024214	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-7	1962-1995	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024214	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-7	1995-2028	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024339	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-4	4344-4377	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019365	Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence	18885-18918	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024360	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-6	24626-24659	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024360	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-6	24659-24692	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024379	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4	25608-25641	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024379	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4	28573-28606	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015636	Borrelia turicatae strain BTE5EL plasmid lp48	12753-12786	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011262	Borrelia duttonii Ly plasmid pl31, complete sequence	21068-21101	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_021623	Borrelia hermsii strain HS1 plasmid lp174, complete sequence	109233-109266	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_021623	Borrelia hermsii strain HS1 plasmid lp174, complete sequence	109266-109299	2	0.941
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP014350	Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence	118443-118476	2	0.941
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	25184-25205	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011256	Borrelia duttonii Ly plasmid pl70, complete sequence	25217-25238	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26611-26632	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26314-26335	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26512-26533	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024318	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1	69524-69545	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024392	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence	523-544	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024404	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence	571-592	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024404	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence	736-757	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011245	Borrelia duttonii Ly plasmid pl28, complete sequence	11889-11910	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011254	Borrelia duttonii Ly plasmid pl42, complete sequence	7805-7826	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024207	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1	69595-69616	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024220	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12	12500-12521	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024220	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12	12665-12686	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024335	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1	69533-69554	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024343	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8	12499-12520	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024343	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8	12664-12685	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP019365	Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence	11976-11997	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP019365	Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence	15588-15609	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP019368	Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence	4329-4350	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024353	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1	69535-69556	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024365	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10	588-609	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024365	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10	753-774	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_021183	Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence	25002-25023	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024373	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1	556-577	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024386	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11	12539-12560	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP024386	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11	12704-12725	2	0.909
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NZ_CP015633	Borrelia turicatae strain BTE5EL plasmid lp31	26101-26122	2	0.909
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011258	Borrelia recurrentis A1 plasmid pl37, complete sequence	16477-16498	3	0.864
NC_011256_1	1.2|24977|22|NC_011256|CRT	24977-24998	22	NC_011260	Borrelia recurrentis A1 plasmid pl53, complete sequence	32094-32115	3	0.864
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024323	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-4	23181-23214	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024330	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-11	551-584	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024398	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp27, complete sequence	24595-24628	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024210	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-3	25586-25619	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024214	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-7	2028-2061	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024337	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-2	25575-25608	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024339	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-4	4377-4410	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024401	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence	25660-25693	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024356	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-2	25571-25604	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024360	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-6	24593-24626	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024375	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-2	25559-25592	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015636	Borrelia turicatae strain BTE5EL plasmid lp48	1680-1713	3	0.912
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019368	Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence	26609-26642	3	0.912
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011258	Borrelia recurrentis A1 plasmid pl37, complete sequence	16477-16498	3	0.864
NC_011256_1	1.4|25097|22|NC_011256|CRT	25097-25118	22	NC_011260	Borrelia recurrentis A1 plasmid pl53, complete sequence	32094-32115	3	0.864
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024322	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-3	2024-2057	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024379	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4	2025-2058	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_021623	Borrelia hermsii strain HS1 plasmid lp174, complete sequence	109101-109134	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_021623	Borrelia hermsii strain HS1 plasmid lp174, complete sequence	109167-109200	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP014350	Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence	118311-118344	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP014350	Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence	118377-118410	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024318	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1	39335-39368	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024392	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence	30700-30733	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024335	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1	39342-39375	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024353	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1	39346-39379	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024373	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1	30736-30769	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	981-1014	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	1047-1080	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	1113-1146	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024324	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5	1179-1212	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024326	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-7	992-1025	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024404	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence	691-724	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26479-26512	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26578-26611	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024207	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1	39406-39439	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	22252-22285	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	22318-22351	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	22384-22417	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024215	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8	22450-22483	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024220	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12	12533-12566	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024343	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8	12532-12565	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019362	Borrelia turicatae 91E135 isolate Oz1 plasmid cp31, complete sequence	30459-30492	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019367	Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence	1349-1382	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019367	Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence	1415-1448	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019367	Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence	1481-1514	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	22825-22858	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	22891-22924	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	22957-22990	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024399	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence	23023-23056	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024400	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-2, complete sequence	954-987	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	1007-1040	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	1073-1106	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	1139-1172	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024361	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7	1205-1238	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024363	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-8	17427-17460	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024365	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10	708-741	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP021873	Borrelia miyamotoi strain CA17-2241 plasmid lp72, complete sequence	32-65	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	1040-1073	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	1106-1139	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	1172-1205	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024380	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5	1238-1271	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024383	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-8	17233-17266	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024386	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11	12572-12605	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015633	Borrelia turicatae strain BTE5EL plasmid lp31	1299-1332	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015633	Borrelia turicatae strain BTE5EL plasmid lp31	1365-1398	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015634	Borrelia turicatae strain BTE5EL plasmid lp40	14221-14254	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015634	Borrelia turicatae strain BTE5EL plasmid lp40	39447-39480	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015634	Borrelia turicatae strain BTE5EL plasmid lp40	39513-39546	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015634	Borrelia turicatae strain BTE5EL plasmid lp40	39579-39612	4	0.882
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015636	Borrelia turicatae strain BTE5EL plasmid lp48	30367-30400	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019368	Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence	28963-28996	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011250	Borrelia duttonii Ly plasmid pl40, complete sequence	12451-12484	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019369	Borrelia turicatae 91E135 isolate Oz1 plasmid lpU43, complete sequence	19070-19103	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024404	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence	592-625	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26380-26413	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024220	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12	12632-12665	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024343	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8	12631-12664	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024365	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10	609-642	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024381	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-6	5539-5572	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024386	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11	12671-12704	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015634	Borrelia turicatae strain BTE5EL plasmid lp40	26738-26771	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011255	Borrelia recurrentis A1 plasmid pl35, complete sequence	26200-26233	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MK250016	Prevotella phage Lak-A1, complete genome	142039-142072	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MK250019	Prevotella phage Lak-A2, complete genome	65086-65119	5	0.853
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019365	Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence	11997-12030	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019365	Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence	15489-15522	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015636	Borrelia turicatae strain BTE5EL plasmid lp48	30214-30247	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015636	Borrelia turicatae strain BTE5EL plasmid lp48	30433-30466	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019368	Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence	4296-4329	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019368	Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence	16391-16424	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019366	Borrelia turicatae 91E135 isolate Oz1 plasmid lpF33.5, complete sequence	20181-20214	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019369	Borrelia turicatae 91E135 isolate Oz1 plasmid lpU43, complete sequence	19223-19256	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP021873	Borrelia miyamotoi strain CA17-2241 plasmid lp72, complete sequence	98-131	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015634	Borrelia turicatae strain BTE5EL plasmid lp40	39381-39414	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011248	Borrelia duttonii Ly plasmid pl35, complete sequence	31044-31077	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MK250029	Prevotella phage Lak-C1, complete genome	102550-102583	6	0.824
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011226	Borrelia duttonii Ly plasmid pl15, complete sequence	6041-6074	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024322	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-3	1925-1958	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024323	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-4	23214-23247	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024330	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-11	584-617	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024210	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-3	25553-25586	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024337	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-2	25542-25575	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024339	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-4	4311-4344	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024401	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence	25627-25660	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024356	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-2	25538-25571	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024375	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-2	25526-25559	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024379	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4	1926-1959	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019368	Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence	35698-35731	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024318	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1	5906-5939	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024392	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence	64128-64161	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011260	Borrelia recurrentis A1 plasmid pl53, complete sequence	31950-31983	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024335	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1	5912-5945	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019369	Borrelia turicatae 91E135 isolate Oz1 plasmid lpU43, complete sequence	31111-31144	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024353	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1	5915-5948	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024373	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1	64165-64198	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024207	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1	5978-6011	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011255	Borrelia recurrentis A1 plasmid pl35, complete sequence	6609-6642	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015336	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence	25141-25174	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015336	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence	25228-25261	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP015336	Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence	25315-25348	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP014351	Borrelia hermsii HS1 isolate Browne Mountain plasmid cp28, complete sequence	27564-27597	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH892364	Streptococcus phage SW15, complete genome	21021-21054	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011258	Borrelia recurrentis A1 plasmid pl37, complete sequence	16333-16366	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP019364	Borrelia turicatae 91E135 isolate Oz1 plasmid lpB34, complete sequence	31114-31147	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	805917-805950	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_019538	Aeromonas phage CC2, complete genome	92933-92966	7	0.794
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	26413-26446	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937460	Streptococcus phage CHPC640, complete genome	23160-23193	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937507	Streptococcus phage CHPC1152, complete genome	22393-22426	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937474	Streptococcus phage CHPC930, complete genome	21099-21132	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH892382	Streptococcus phage SWK6, complete genome	21459-21492	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705266	Streptococcus phage P7152, complete genome	20769-20802	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937480	Streptococcus phage CHPC954, complete genome	21095-21128	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705282	Streptococcus phage P8921, complete genome	20994-21027	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705288	Streptococcus phage P9901, complete genome	21518-21551	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705268	Streptococcus phage P7571, complete genome	20571-20604	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937463	Streptococcus phage CHPC676, complete genome	23264-23297	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705269	Streptococcus phage P7572, complete genome	20571-20604	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705260	Streptococcus phage P5651, complete genome	20712-20745	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	FJ226752	Streptococcus phage ALQ13.2, complete genome	21203-21236	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705272	Streptococcus phage P7601, complete genome	21551-21584	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937505	Streptococcus phage CHPC1109, complete genome	19795-19828	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705262	Streptococcus phage P7132, complete genome	21530-21563	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024338	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-3	5598-5631	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024378	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-3, complete sequence	22226-22259	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705259	Streptococcus phage P5641, complete genome	20853-20886	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	90501-90534	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MF498774	Aeromonas phage AS-yj, partial genome	199044-199077	8	0.765
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024322	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-3	3125-3158	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024379	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4	3126-3159	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024318	Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1	19015-19048	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024392	Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence	51022-51055	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024335	Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1	19021-19054	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024353	Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1	19024-19057	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024373	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1	51056-51089	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP024207	Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1	19087-19120	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH000604	Streptococcus phage D1811, complete genome	21058-21091	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937495	Streptococcus phage CHPC1045, complete genome	20539-20572	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH000602	Streptococcus phage D5842, complete genome	22366-22399	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705290	Streptococcus phage P9903, complete genome	20252-20285	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705261	Streptococcus phage P5652, complete genome	20224-20257	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705274	Streptococcus phage P7631, complete genome	21401-21434	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH973662	Streptococcus phage SW7, complete genome	21223-21256	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937468	Streptococcus phage CHPC879, complete genome	20655-20688	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MG708273	Streptococcus phage vB_SthS_VA698, partial genome	8494-8527	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH000603	Streptococcus phage D1024, complete genome	22070-22103	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MF580761	Streptococcus phage 9A, complete genome	20592-20625	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH892381	Streptococcus phage SWK5, complete genome	21281-21314	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937458	Streptococcus phage CHPC572, complete genome	21038-21071	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705275	Streptococcus phage P7632, complete genome	21615-21648	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KT717084	Streptococcus phage 53, complete genome	21167-21200	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH892376	Streptococcus phage SW1151, complete genome	21369-21402	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH892379	Streptococcus phage SWK3, complete genome	21050-21083	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MG708274	Streptococcus phage vB_SthS_VA214, complete genome	16260-16293	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705289	Streptococcus phage P9902, complete genome	19973-20006	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	HG424323	Streptococcus phage 20617 complete prophage genome	39440-39473	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705267	Streptococcus phage P7154, complete genome	21549-21582	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NC_002072	Streptococcus phage DT1, complete genome	20534-20567	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937466	Streptococcus phage CHPC875, complete genome	21380-21413	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH892356	Streptococcus phage SW21, complete genome	21074-21107	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705276	Streptococcus phage P7633, complete genome	20742-20775	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705281	Streptococcus phage P7955, complete genome	22320-22353	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH892357	Streptococcus phage SW8, complete genome	20960-20993	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	AF085222	Streptococcus thermophilus bacteriophage DT1, complete genome	20534-20567	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705283	Streptococcus phage P8922, complete genome	21551-21584	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937485	Streptococcus phage CHPC1014, complete genome	20795-20828	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH892378	Streptococcus phage SWK2, complete genome	21688-21721	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705280	Streptococcus phage P7954, complete genome	22656-22689	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937472	Streptococcus phage CHPC928, complete genome	21162-21195	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937502	Streptococcus phage CHPC1083, complete genome	22108-22141	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937509	Streptococcus phage CHPC1230, complete genome	22244-22277	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937470	Streptococcus phage CHPC925, complete genome	20078-20111	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937478	Streptococcus phage CHPC951, complete genome	22083-22116	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937490	Streptococcus phage CHPC1036, complete genome	21454-21487	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH892380	Streptococcus phage SWK4, complete genome	21050-21083	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY705265	Streptococcus phage P7151, complete genome	21408-21441	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH892377	Streptococcus phage SWK1, complete genome	21219-21252	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP054441	Staphylococcus saprophyticus strain UTI-058y plasmid pUTI-058y-1, complete sequence	17178-17211	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MN909556	Staphylococcus saprophyticus strain 1005578 plasmid p1005578_vga, complete sequence	38015-38048	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	NZ_CP054445	Staphylococcus saprophyticus strain UTI-056 plasmid pUTI-056-1, complete sequence	17606-17639	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	LT546029	Enterococcus phage VFW genome assembly, chromosome: VFW	65360-65393	9	0.735
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	KY420199	Proteus phage vB_PvuS_Pm34, complete genome	37852-37885	10	0.706
NC_011256_1	1.3|25031|34|NC_011256|CRT	25031-25064	34	MH937491	Streptococcus phage CHPC1037, partial genome	21625-21658	10	0.706

1. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011226 (Borrelia duttonii Ly plasmid pl15, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattgag	Protospacer
**********************

2. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattgag	Protospacer
**********************

3. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011248 (Borrelia duttonii Ly plasmid pl35, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

4. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011248 (Borrelia duttonii Ly plasmid pl35, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

5. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011248 (Borrelia duttonii Ly plasmid pl35, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

6. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

7. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

8. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 0, identity: 1.0

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatatcaattttattatcaagttcattaaattt	Protospacer
**********************************

9. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 0, identity: 1.0

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatatcaattttattatcaagttcattaaattt	Protospacer
**********************************

10. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011226 (Borrelia duttonii Ly plasmid pl15, complete sequence) position: , mismatch: 0, identity: 1.0

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatatcaattttattatcaagttcattaaattt	Protospacer
**********************************

11. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011226 (Borrelia duttonii Ly plasmid pl15, complete sequence) position: , mismatch: 0, identity: 1.0

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatatcaattttattatcaagttcattaaattt	Protospacer
**********************************

12. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011248 (Borrelia duttonii Ly plasmid pl35, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

13. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011248 (Borrelia duttonii Ly plasmid pl35, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

14. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011248 (Borrelia duttonii Ly plasmid pl35, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

15. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

16. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 0, identity: 1.0

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
**********************

17. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattgag	CRISPR spacer
tagtatcaattttattattgag	Protospacer
.*********************

18. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
*******************.**

19. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
*******************.**

20. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011245 (Borrelia duttonii Ly plasmid pl28, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattgat	Protospacer
********************* 

21. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011248 (Borrelia duttonii Ly plasmid pl35, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
*******************.**

22. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011248 (Borrelia duttonii Ly plasmid pl35, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
*******************.**

23. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011248 (Borrelia duttonii Ly plasmid pl35, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattattaag	Protospacer
*******************.**

24. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattgag	Protospacer
*******************.**

25. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
tagtatcaattttattattaag	Protospacer
.*********************

26. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024218 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-10) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

27. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011226 (Borrelia duttonii Ly plasmid pl15, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattgag	Protospacer
*******************.**

28. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatgaag	Protospacer
****************** ***

29. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024405 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-1, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

30. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024364 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-9) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

31. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024368 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-13) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

32. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP015336 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

33. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP015336 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

34. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP015336 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

35. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP014792 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpB58, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

36. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024384 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-9) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

37. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 1, identity: 0.971

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatttcaattttattatcaagttcattaaattt	Protospacer
**** *****************************

38. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 1, identity: 0.971

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tagtatcaattttattatcaagttcattaaattt	Protospacer
**.*******************************

39. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattgag	Protospacer
*******************.**

40. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
tagtatcaattttattattaag	Protospacer
.*********************

41. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024218 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-10) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

42. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011226 (Borrelia duttonii Ly plasmid pl15, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattgag	Protospacer
*******************.**

43. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatgaag	Protospacer
****************** ***

44. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024405 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-1, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

45. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024364 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-9) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

46. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024368 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-13) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

47. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP015336 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

48. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP015336 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

49. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP015336 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

50. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP014792 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpB58, complete sequence) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

51. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024384 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-9) position: , mismatch: 1, identity: 0.955

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatcaag	Protospacer
******************.***

52. spacer 1.1|24923|22|NC_011256|CRT matches to NZ_CP024404 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

53. spacer 1.1|24923|22|NC_011256|CRT matches to NZ_CP024404 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

54. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011258 (Borrelia recurrentis A1 plasmid pl37, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
ctttatcaattttattattgag	Protospacer
*  *******************

55. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011260 (Borrelia recurrentis A1 plasmid pl53, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
ctttatcaattttattattgag	Protospacer
*  *******************

56. spacer 1.1|24923|22|NC_011256|CRT matches to NZ_CP024365 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

57. spacer 1.1|24923|22|NC_011256|CRT matches to NZ_CP024365 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

58. spacer 1.1|24923|22|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
tagtatcaattttattattaag	Protospacer
.******************.**

59. spacer 1.1|24923|22|NC_011256|CRT matches to NZ_CP024220 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

60. spacer 1.1|24923|22|NC_011256|CRT matches to NZ_CP024220 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

61. spacer 1.1|24923|22|NC_011256|CRT matches to NZ_CP024343 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

62. spacer 1.1|24923|22|NC_011256|CRT matches to NZ_CP024343 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

63. spacer 1.1|24923|22|NC_011256|CRT matches to NZ_CP024386 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

64. spacer 1.1|24923|22|NC_011256|CRT matches to NZ_CP024386 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattgag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

65. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaattttattatcaag	Protospacer
.*****************.***

66. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaattttattattgag	Protospacer
.******************.**

67. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tggtatcaattttattattaag	Protospacer
..********************

68. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagcatcaattttattattaag	Protospacer
.**.******************

69. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagcatcaattttattattaag	Protospacer
.**.******************

70. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024318 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

71. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024392 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

72. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024404 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

73. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024404 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

74. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011245 (Borrelia duttonii Ly plasmid pl28, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattgat	Protospacer
*******************.* 

75. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011254 (Borrelia duttonii Ly plasmid pl42, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttgttattaaa	Protospacer
*************.*******.

76. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024207 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

77. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024220 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

78. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024220 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

79. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024335 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

80. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024343 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

81. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024343 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

82. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP019365 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaatcttattattaag	Protospacer
.*********.***********

83. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP019365 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaatcttattattaag	Protospacer
.*********.***********

84. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP019368 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaatcttattattaag	Protospacer
.*********.***********

85. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024353 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

86. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024365 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

87. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024365 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

88. spacer 1.2|24977|22|NC_011256|CRT matches to NC_021183 (Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcatttttattattaac	Protospacer
******** ************ 

89. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024373 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

90. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024386 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

91. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP024386 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

92. spacer 1.2|24977|22|NC_011256|CRT matches to NZ_CP015633 (Borrelia turicatae strain BTE5EL plasmid lp31) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaatcttattattaag	Protospacer
.*********.***********

93. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024322 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-3) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tcttatcaattttattatcaagttcattaaattt	Protospacer
*  *******************************

94. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024398 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp27, complete sequence) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttcattaaattt	Protospacer
*. *******************************

95. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024398 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp27, complete sequence) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttcattaaattt	Protospacer
*. *******************************

96. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024214 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-7) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttcattaaattt	Protospacer
*. *******************************

97. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024214 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-7) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttcattaaattt	Protospacer
*. *******************************

98. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024339 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-4) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttcattaaattt	Protospacer
*. *******************************

99. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019365 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
caatatctattttattatcaagttcattaaattt	Protospacer
.****** **************************

100. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024360 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-6) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttcattaaattt	Protospacer
*. *******************************

101. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024360 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-6) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttcattaaattt	Protospacer
*. *******************************

102. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024379 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ttttatcaattttattatcaagttcattaaattt	Protospacer
*  *******************************

103. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024379 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tcttatcaattttattatcaagttcattaaattt	Protospacer
*  *******************************

104. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015636 (Borrelia turicatae strain BTE5EL plasmid lp48) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
caatatctattttattatcaagttcattaaattt	Protospacer
.****** **************************

105. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011262 (Borrelia duttonii Ly plasmid pl31, complete sequence) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatatctattttgttatcaagttcattaaattt	Protospacer
******* *****.********************

106. spacer 1.3|25031|34|NC_011256|CRT matches to NC_021623 (Borrelia hermsii strain HS1 plasmid lp174, complete sequence) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tagtatctattttattatcaagttcattaaattt	Protospacer
**.**** **************************

107. spacer 1.3|25031|34|NC_011256|CRT matches to NC_021623 (Borrelia hermsii strain HS1 plasmid lp174, complete sequence) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taacatcaattttgttatcaagttcattaaattt	Protospacer
***.*********.********************

108. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP014350 (Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence) position: , mismatch: 2, identity: 0.941

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tagtatctattttattatcaagttcattaaattt	Protospacer
**.**** **************************

109. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaattttattatcaag	Protospacer
.*****************.***

110. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011256 (Borrelia duttonii Ly plasmid pl70, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaattttattattgag	Protospacer
.******************.**

111. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tggtatcaattttattattaag	Protospacer
..********************

112. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagcatcaattttattattaag	Protospacer
.**.******************

113. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagcatcaattttattattaag	Protospacer
.**.******************

114. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024318 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

115. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024392 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

116. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024404 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

117. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024404 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

118. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011245 (Borrelia duttonii Ly plasmid pl28, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattattgat	Protospacer
*******************.* 

119. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011254 (Borrelia duttonii Ly plasmid pl42, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttgttattaaa	Protospacer
*************.*******.

120. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024207 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

121. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024220 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

122. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024220 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

123. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024335 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

124. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024343 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

125. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024343 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

126. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP019365 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaatcttattattaag	Protospacer
.*********.***********

127. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP019365 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaatcttattattaag	Protospacer
.*********.***********

128. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP019368 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaatcttattattaag	Protospacer
.*********.***********

129. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024353 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

130. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024365 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

131. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024365 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

132. spacer 1.4|25097|22|NC_011256|CRT matches to NC_021183 (Clostridium pasteurianum BC1 plasmid pCLOPA01, complete sequence) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcatttttattattaac	Protospacer
******** ************ 

133. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024373 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tattatcaattttattattaag	Protospacer
.* *******************

134. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024386 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

135. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP024386 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
cagtatcaattttattatttaa	Protospacer
******************* *.

136. spacer 1.4|25097|22|NC_011256|CRT matches to NZ_CP015633 (Borrelia turicatae strain BTE5EL plasmid lp31) position: , mismatch: 2, identity: 0.909

cagtatcaattttattattaag	CRISPR spacer
tagtatcaatcttattattaag	Protospacer
.*********.***********

137. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011258 (Borrelia recurrentis A1 plasmid pl37, complete sequence) position: , mismatch: 3, identity: 0.864

cagtatcaattttattattaag	CRISPR spacer
ttttatcaattttattattaag	Protospacer
.  *******************

138. spacer 1.2|24977|22|NC_011256|CRT matches to NC_011260 (Borrelia recurrentis A1 plasmid pl53, complete sequence) position: , mismatch: 3, identity: 0.864

cagtatcaattttattattaag	CRISPR spacer
ttttatcaattttattattaag	Protospacer
.  *******************

139. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024323 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-4) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ccttatcaattttattatcaagttcattaaattt	Protospacer
.  *******************************

140. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024330 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-11) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ccttatcaattttattatcaagttcattaaattt	Protospacer
.  *******************************

141. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024398 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp27, complete sequence) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagaatcaattttattatcaagttcattaaattt	Protospacer
.*. ******************************

142. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024210 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-3) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ccttatcaattttattatcaagttcattaaattt	Protospacer
.  *******************************

143. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024214 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-7) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagaatcaattttattatcaagttcattaaattt	Protospacer
.*. ******************************

144. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024337 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-2) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ccttatcaattttattatcaagttcattaaattt	Protospacer
.  *******************************

145. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024339 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-4) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagaatcaattttattatcaagttcattaaattt	Protospacer
.*. ******************************

146. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024401 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ccttatcaattttattatcaagttcattaaattt	Protospacer
.  *******************************

147. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024356 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-2) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ccttatcaattttattatcaagttcattaaattt	Protospacer
.  *******************************

148. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024360 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-6) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagaatcaattttattatcaagttcattaaattt	Protospacer
.*. ******************************

149. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024375 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-2) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ccttatcaattttattatcaagttcattaaattt	Protospacer
.  *******************************

150. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015636 (Borrelia turicatae strain BTE5EL plasmid lp48) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagaatcaattttattatcaagttcattaaattt	Protospacer
.*. ******************************

151. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019368 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence) position: , mismatch: 3, identity: 0.912

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaatcttattatcaagttcattaaattt	Protospacer
.* *******.***********************

152. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011258 (Borrelia recurrentis A1 plasmid pl37, complete sequence) position: , mismatch: 3, identity: 0.864

cagtatcaattttattattaag	CRISPR spacer
ttttatcaattttattattaag	Protospacer
.  *******************

153. spacer 1.4|25097|22|NC_011256|CRT matches to NC_011260 (Borrelia recurrentis A1 plasmid pl53, complete sequence) position: , mismatch: 3, identity: 0.864

cagtatcaattttattattaag	CRISPR spacer
ttttatcaattttattattaag	Protospacer
.  *******************

154. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024322 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-3) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagaatcaattttattatcaagttctttaaattt	Protospacer
.*. ********************* ********

155. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024379 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagaatcaattttattatcaagttctttaaattt	Protospacer
.*. ********************* ********

156. spacer 1.3|25031|34|NC_011256|CRT matches to NC_021623 (Borrelia hermsii strain HS1 plasmid lp174, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatctattttattatcgagttcattaaattt	Protospacer
.*.**** ***********.**************

157. spacer 1.3|25031|34|NC_011256|CRT matches to NC_021623 (Borrelia hermsii strain HS1 plasmid lp174, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatctattttattatcgagttcattaaattt	Protospacer
.*.**** ***********.**************

158. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP014350 (Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatctattttattatcgagttcattaaattt	Protospacer
.*.**** ***********.**************

159. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP014350 (Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatctattttattatcgagttcattaaattt	Protospacer
.*.**** ***********.**************

160. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024318 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttgttatcaagttcagtaaattt	Protospacer
.* **********.************ *******

161. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024392 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttgttatcaagttcagtaaattt	Protospacer
.* **********.************ *******

162. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024335 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttgttatcaagttcagtaaattt	Protospacer
.* **********.************ *******

163. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024353 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttgttatcaagttcagtaaattt	Protospacer
.* **********.************ *******

164. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024373 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttgttatcaagttcagtaaattt	Protospacer
.* **********.************ *******

165. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttattatcaagctcgttaaattt	Protospacer
.* *******************.**.********

166. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaattttattatcaaggtcattaaattt	Protospacer
.* *.***************** ***********

167. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaattttattatcaaggtcattaaattt	Protospacer
.* *.***************** ***********

168. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024324 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-5) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttgctatcaagttcattaaattt	Protospacer
.* **********..*******************

169. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024326 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-7) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttattatcaagctcgttaaattt	Protospacer
.* *******************.**.********

170. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024404 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatgaatttttttatcaagttcattaaattt	Protospacer
.*.*** ****** ********************

171. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ttttgtcaattttattgtcaagttcattaaattt	Protospacer
*  *.***********.*****************

172. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ttttatcaattttattgtcaagttcattaaactt	Protospacer
*  *************.**************.**

173. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024207 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttgttatcaagttcagtaaattt	Protospacer
.* **********.************ *******

174. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttgctatcaagttcattaaattt	Protospacer
.* **********..*******************

175. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaattttattatcaaggtcattaaattt	Protospacer
.* *.***************** ***********

176. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaattttattatcaaggtcattaaattt	Protospacer
.* *.***************** ***********

177. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024215 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-8) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttattatcaagctcgttaaattt	Protospacer
.* *******************.**.********

178. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024220 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatgaatttttttatcaagttcattaaattt	Protospacer
.*.*** ****** ********************

179. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024343 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatgaatttttttatcaagttcattaaattt	Protospacer
.*.*** ****** ********************

180. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019362 (Borrelia turicatae 91E135 isolate Oz1 plasmid cp31, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaatcttattatcaagttcattgaattt	Protospacer
.* *******.*****************.*****

181. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019367 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatctattttgttatcaagttcattaaattt	Protospacer
.* **** *****.********************

182. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019367 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatctattttgttatcaagttcattaaattt	Protospacer
.* **** *****.********************

183. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019367 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpG29, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatctattttgttatcaagttcattaaattt	Protospacer
.* **** *****.********************

184. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttgctatcaagttcattaaattt	Protospacer
.* **********..*******************

185. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaattttattatcaaggtcattaaattt	Protospacer
.* *.***************** ***********

186. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaattttattatcaaggtcattaaattt	Protospacer
.* *.***************** ***********

187. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024399 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp24, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttattatcaagctcgttaaattt	Protospacer
.* *******************.**.********

188. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024400 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp18-2, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttattatcaagctcgttaaattt	Protospacer
.* *******************.**.********

189. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttattatcaagctcgttaaattt	Protospacer
.* *******************.**.********

190. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaattttattatcaaggtcattaaattt	Protospacer
.* *.***************** ***********

191. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaattttattatcaaggtcattaaattt	Protospacer
.* *.***************** ***********

192. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024361 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-7) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttgctatcaagttcattaaattt	Protospacer
.* **********..*******************

193. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024363 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-8) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttattatcaagctcgttaaattt	Protospacer
.* *******************.**.********

194. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024365 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatgaatttttttatcaagttcattaaattt	Protospacer
.*.*** ****** ********************

195. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP021873 (Borrelia miyamotoi strain CA17-2241 plasmid lp72, complete sequence) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaattttcttatcaagttcattaaattt	Protospacer
.* *.******** ********************

196. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttattatcaagctcgttaaattt	Protospacer
.* *******************.**.********

197. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaattttattatcaaggtcattaaattt	Protospacer
.* *.***************** ***********

198. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaattttattatcaaggtcattaaattt	Protospacer
.* *.***************** ***********

199. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024380 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-5) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttgctatcaagttcattaaattt	Protospacer
.* **********..*******************

200. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024383 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-8) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaattttattatcaagctcgttaaattt	Protospacer
.* *******************.**.********

201. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024386 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatgaatttttttatcaagttcattaaattt	Protospacer
.*.*** ****** ********************

202. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015633 (Borrelia turicatae strain BTE5EL plasmid lp31) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatctattttgttatcaagttcattaaattt	Protospacer
.* **** *****.********************

203. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015633 (Borrelia turicatae strain BTE5EL plasmid lp31) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatctattttgttatcaagttcattaaattt	Protospacer
.* **** *****.********************

204. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015634 (Borrelia turicatae strain BTE5EL plasmid lp40) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatcaatcttattatcaagttcattgaattt	Protospacer
.* *******.*****************.*****

205. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015634 (Borrelia turicatae strain BTE5EL plasmid lp40) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatctattttgttatcaagttcattaaattt	Protospacer
.* **** *****.********************

206. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015634 (Borrelia turicatae strain BTE5EL plasmid lp40) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatctattttgttatcaagttcattaaattt	Protospacer
.* **** *****.********************

207. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015634 (Borrelia turicatae strain BTE5EL plasmid lp40) position: , mismatch: 4, identity: 0.882

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattatctattttgttatcaagttcattaaattt	Protospacer
.* **** *****.********************

208. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015636 (Borrelia turicatae strain BTE5EL plasmid lp48) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaatcttattatcaagctcattaaattt	Protospacer
.* *.*****.***********.***********

209. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019368 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctgtatcaatcttattatcaagttcattgaattt	Protospacer
. .*******.*****************.*****

210. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011250 (Borrelia duttonii Ly plasmid pl40, complete sequence) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
atttatctattttagtatcaagttcattaaattt	Protospacer
   **** ****** *******************

211. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019369 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpU43, complete sequence) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cattgtcaatcttattatcaagctcattaaattt	Protospacer
.* *.*****.***********.***********

212. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024404 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp13, complete sequence) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt---	CRISPR spacer
tgttatcaattttattatcaagttcatt---tttgac	Protospacer
*. *************************   ***   

213. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ttttgtcaattttattgtcaagttcactaaattt	Protospacer
*  *.***********.*********.*******

214. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024220 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-12) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt---	CRISPR spacer
tgttatcaattttattatcaagttcatt---tttgac	Protospacer
*. *************************   ***   

215. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024343 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-8) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt---	CRISPR spacer
tgttatcaattttattatcaagttcatt---tttgac	Protospacer
*. *************************   ***   

216. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024365 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-10) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt---	CRISPR spacer
tgttatcaattttattatcaagttcatt---tttgac	Protospacer
*. *************************   ***   

217. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024381 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-6) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctttatcaattttgttatcaagttcagtaaattt	Protospacer
.  **********.************ *******

218. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024386 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-11) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt---	CRISPR spacer
tgttatcaattttattatcaagttcatt---tttgac	Protospacer
*. *************************   ***   

219. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015634 (Borrelia turicatae strain BTE5EL plasmid lp40) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctgtatcaatcttattatccagttcattaaattt	Protospacer
. .*******.******** **************

220. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011255 (Borrelia recurrentis A1 plasmid pl35, complete sequence) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taatatcaattttattatcaagctctttaatatc	Protospacer
**********************.** ****  *.

221. spacer 1.3|25031|34|NC_011256|CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt--	CRISPR spacer
caatatcaattttattatcaagttc--tgaatcttg	Protospacer
.************************  *.***.*  

222. spacer 1.3|25031|34|NC_011256|CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 5, identity: 0.853

taatatcaattttattatcaagttcattaaattt--	CRISPR spacer
caatatcaattttattatcaagttc--tgaatcttg	Protospacer
.************************  *.***.*  

223. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019365 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cgttgtcaatcttgttatcaagttcattaaattt	Protospacer
.. *.*****.**.********************

224. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019365 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpE43, complete sequence) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cgttgtcaatcttattatcaagctcattaaattt	Protospacer
.. *.*****.***********.***********

225. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015636 (Borrelia turicatae strain BTE5EL plasmid lp48) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cgttgtcaatcttattatcaagttcattgaattt	Protospacer
.. *.*****.*****************.*****

226. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015636 (Borrelia turicatae strain BTE5EL plasmid lp48) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtgtatatcttattatcaagttcattaaattt	Protospacer
.*.*.*  **.***********************

227. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019368 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cgttgtcaatcttgttatcaagttcattaaattt	Protospacer
.. *.*****.**.********************

228. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019368 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctgtgtcaatcttattatcaaggtcattaaattt	Protospacer
. .*.*****.*********** ***********

229. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019366 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpF33.5, complete sequence) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtgttgattttgttatcaagttcattaaattt	Protospacer
.*.*.*..*****.********************

230. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019369 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpU43, complete sequence) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cgttgtcaatcttattatcaagttcattgaattt	Protospacer
.. *.*****.*****************.*****

231. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP021873 (Borrelia miyamotoi strain CA17-2241 plasmid lp72, complete sequence) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt---	CRISPR spacer
cattatcaattttcttatcaagttcatt---tttaat	Protospacer
.* ********** **************   ***   

232. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015634 (Borrelia turicatae strain BTE5EL plasmid lp40) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
gaagtttaagtttgttatcaagttcattaaattt	Protospacer
 **  *.** ***.********************

233. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011248 (Borrelia duttonii Ly plasmid pl35, complete sequence) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ccttgtcgattctattatcaagttcattaaattt	Protospacer
.  *.**.***.**********************

234. spacer 1.3|25031|34|NC_011256|CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 6, identity: 0.824

taatatcaattttattatcaagttcattaaattt--	CRISPR spacer
caatatcaattttattatcaagttc--tgattcttg	Protospacer
.************************  *.* *.*  

235. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011226 (Borrelia duttonii Ly plasmid pl15, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ccttgttaactttattatcaagctcattaaattt	Protospacer
.  *.*.**.************.***********

236. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024322 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-3) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tagaattaattttattatcaagttctttaatatc	Protospacer
**. **.****************** ****  *.

237. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024323 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-4) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttctctaatatc	Protospacer
*. ********************** .***  *.

238. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024330 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-11) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttctctaatatc	Protospacer
*. ********************** .***  *.

239. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024210 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-3) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttctctaatatc	Protospacer
*. ********************** .***  *.

240. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024337 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-2) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttctctaatatc	Protospacer
*. ********************** .***  *.

241. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024339 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-4) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttctttgatatc	Protospacer
*. ********************** **.*  *.

242. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024401 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp64, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttctctaatatc	Protospacer
*. ********************** .***  *.

243. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024356 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-2) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttctctaatatc	Protospacer
*. ********************** .***  *.

244. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024375 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-2) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tgttatcaattttattatcaagttctctaatatc	Protospacer
*. ********************** .***  *.

245. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024379 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
tagaattaattttattatcaagttctttaatatc	Protospacer
**. **.****************** ****  *.

246. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019368 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpT39, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt---	CRISPR spacer
tagtatctattttattatcaagttcagt---cttgac	Protospacer
**.**** ****************** *   .**   

247. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024318 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cgttatcaattttattatcaagttctttaatatc	Protospacer
.. ********************** ****  *.

248. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024392 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cgttatcaattttattatcaagttctttaatatc	Protospacer
.. ********************** ****  *.

249. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011260 (Borrelia recurrentis A1 plasmid pl53, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctttgttaatttgattatcaagttcattgaattt	Protospacer
.  *.*.***** ***************.*****

250. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024335 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cgttatcaattttattatcaagttctttaatatc	Protospacer
.. ********************** ****  *.

251. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019369 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpU43, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt---	CRISPR spacer
tagtatctattttattatcaagttcagt---cttgac	Protospacer
**.**** ****************** *   .**   

252. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024353 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cgttatcaattttattatcaagttctttaatatc	Protospacer
.. ********************** ****  *.

253. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024373 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cgttatcaattttattatcaagttctttaatatc	Protospacer
.. ********************** ****  *.

254. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024207 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cgttatcaattttattatcaagttctttaatatc	Protospacer
.. ********************** ****  *.

255. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011255 (Borrelia recurrentis A1 plasmid pl35, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatcaattttgttatcaagttctttaatatc	Protospacer
.*.**********.*********** ****  *.

256. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015336 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatcaattttattatcaaggtctttaatgtc	Protospacer
.*.******************* ** ****  *.

257. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015336 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatcaattttattatcaaggtctttaatgtc	Protospacer
.*.******************* ** ****  *.

258. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP015336 (Borrelia hermsii HS1 isolate Browne Mountain plasmid lpF27, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagtatcaattttattatcaaggtctttaatgtc	Protospacer
.*.******************* ** ****  *.

259. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP014351 (Borrelia hermsii HS1 isolate Browne Mountain plasmid cp28, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
acattatgattttattatcaagttcattgaattt	Protospacer
  **  ..********************.*****

260. spacer 1.3|25031|34|NC_011256|CRT matches to MH892364 (Streptococcus phage SW15, complete genome) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
attttgcgatttttttatcaagttcattaaattt	Protospacer
   *  *.***** ********************

261. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011258 (Borrelia recurrentis A1 plasmid pl37, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctttgttaatttgattatcaagttcattgaattt	Protospacer
.  *.*.***** ***************.*****

262. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP019364 (Borrelia turicatae 91E135 isolate Oz1 plasmid lpB34, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt---	CRISPR spacer
tagtatctattttattatcaagttcagt---cttgac	Protospacer
**.**** ****************** *   .**   

263. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 7, identity: 0.794

taatatcaa---ttttattatcaagttcattaaattt	CRISPR spacer
---tatcaggccttttaaaatcaagttcattaaatta	Protospacer
   *****.   *****  ***************** 

264. spacer 1.3|25031|34|NC_011256|CRT matches to NC_019538 (Aeromonas phage CC2, complete genome) position: , mismatch: 7, identity: 0.794

taatatcaattttattatcaagttcattaaattt--	CRISPR spacer
taatatcaattttattagcaaattta--aaatcagt	Protospacer
***************** ***.**.*  ****.   

265. spacer 1.3|25031|34|NC_011256|CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt----	CRISPR spacer
tagtatcaattttattattaagttc----tatcttagt	Protospacer
**.***************.******     **.*    

266. spacer 1.3|25031|34|NC_011256|CRT matches to MH937460 (Streptococcus phage CHPC640, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

267. spacer 1.3|25031|34|NC_011256|CRT matches to MH937507 (Streptococcus phage CHPC1152, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

268. spacer 1.3|25031|34|NC_011256|CRT matches to MH937474 (Streptococcus phage CHPC930, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

269. spacer 1.3|25031|34|NC_011256|CRT matches to MH892382 (Streptococcus phage SWK6, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

270. spacer 1.3|25031|34|NC_011256|CRT matches to KY705266 (Streptococcus phage P7152, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

271. spacer 1.3|25031|34|NC_011256|CRT matches to MH937480 (Streptococcus phage CHPC954, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

272. spacer 1.3|25031|34|NC_011256|CRT matches to KY705282 (Streptococcus phage P8921, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

273. spacer 1.3|25031|34|NC_011256|CRT matches to KY705288 (Streptococcus phage P9901, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

274. spacer 1.3|25031|34|NC_011256|CRT matches to KY705268 (Streptococcus phage P7571, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

275. spacer 1.3|25031|34|NC_011256|CRT matches to MH937463 (Streptococcus phage CHPC676, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

276. spacer 1.3|25031|34|NC_011256|CRT matches to KY705269 (Streptococcus phage P7572, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

277. spacer 1.3|25031|34|NC_011256|CRT matches to KY705260 (Streptococcus phage P5651, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

278. spacer 1.3|25031|34|NC_011256|CRT matches to FJ226752 (Streptococcus phage ALQ13.2, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

279. spacer 1.3|25031|34|NC_011256|CRT matches to KY705272 (Streptococcus phage P7601, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

280. spacer 1.3|25031|34|NC_011256|CRT matches to MH937505 (Streptococcus phage CHPC1109, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

281. spacer 1.3|25031|34|NC_011256|CRT matches to KY705262 (Streptococcus phage P7132, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagttcattaaattt	Protospacer
   . *..***** ********************

282. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024338 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-3) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctttatcaattttgttatcaagttctttaatctc	Protospacer
.  **********.*********** **** .*.

283. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024378 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-3, complete sequence) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctttatcaattttgttatcaagttctttaatctc	Protospacer
.  **********.*********** **** .*.

284. spacer 1.3|25031|34|NC_011256|CRT matches to KY705259 (Streptococcus phage P5641, complete genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
attttgcgattttttcatcaagttcattaaattt	Protospacer
   *  *.***** *.******************

285. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 8, identity: 0.765

----taatatcaattttattatcaagttcattaaattt	CRISPR spacer
agtctaa----aattttattttcaagttctttaaaatg	Protospacer
    ***    ********* ******** ***** * 

286. spacer 1.3|25031|34|NC_011256|CRT matches to MF498774 (Aeromonas phage AS-yj, partial genome) position: , mismatch: 8, identity: 0.765

taatatcaattttattatcaagttcattaaattt--	CRISPR spacer
taatatcaattttattagcaaatttg--aaatcagt	Protospacer
***************** ***.**..  ****.   

287. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024322 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-3) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagaattaattttattatcaagttctttgatatc	Protospacer
.*. **.****************** **.*  *.

288. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024379 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-4) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
cagaattaattttattatcaagttctttgatatc	Protospacer
.*. **.****************** **.*  *.

289. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024318 (Borrelia miyamotoi strain Yekat-6 plasmid pYkt6-1) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctttatcaattttgttatcaagttcagtatggct	Protospacer
.  **********.************ ** . .*

290. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024392 (Borrelia miyamotoi strain Izh-4 plasmid pIzh4-lp70, complete sequence) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctttatcaattttgttatcaagttcagtatggct	Protospacer
.  **********.************ ** . .*

291. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024335 (Borrelia miyamotoi strain Yekat-1 plasmid pYkt1-1) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctttatcaattttgttatcaagttcagtatggct	Protospacer
.  **********.************ ** . .*

292. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024353 (Borrelia miyamotoi strain Izh-16 plasmid pIzh16-1) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctttatcaattttgttatcaagttcagtatggct	Protospacer
.  **********.************ ** . .*

293. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024373 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-1) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctttatcaattttgttatcaagttcagtatggct	Protospacer
.  **********.************ ** . .*

294. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP024207 (Borrelia miyamotoi strain Izh-5 plasmid pIzh5-1) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
ctttatcaattttgttatcaagttcagtatggct	Protospacer
.  **********.************ ** . .*

295. spacer 1.3|25031|34|NC_011256|CRT matches to MH000604 (Streptococcus phage D1811, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

296. spacer 1.3|25031|34|NC_011256|CRT matches to MH937495 (Streptococcus phage CHPC1045, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

297. spacer 1.3|25031|34|NC_011256|CRT matches to MH000602 (Streptococcus phage D5842, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

298. spacer 1.3|25031|34|NC_011256|CRT matches to KY705290 (Streptococcus phage P9903, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

299. spacer 1.3|25031|34|NC_011256|CRT matches to KY705261 (Streptococcus phage P5652, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

300. spacer 1.3|25031|34|NC_011256|CRT matches to KY705274 (Streptococcus phage P7631, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

301. spacer 1.3|25031|34|NC_011256|CRT matches to MH973662 (Streptococcus phage SW7, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

302. spacer 1.3|25031|34|NC_011256|CRT matches to MH937468 (Streptococcus phage CHPC879, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

303. spacer 1.3|25031|34|NC_011256|CRT matches to MG708273 (Streptococcus phage vB_SthS_VA698, partial genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

304. spacer 1.3|25031|34|NC_011256|CRT matches to MH000603 (Streptococcus phage D1024, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

305. spacer 1.3|25031|34|NC_011256|CRT matches to MF580761 (Streptococcus phage 9A, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

306. spacer 1.3|25031|34|NC_011256|CRT matches to MH892381 (Streptococcus phage SWK5, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

307. spacer 1.3|25031|34|NC_011256|CRT matches to MH937458 (Streptococcus phage CHPC572, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

308. spacer 1.3|25031|34|NC_011256|CRT matches to KY705275 (Streptococcus phage P7632, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

309. spacer 1.3|25031|34|NC_011256|CRT matches to KT717084 (Streptococcus phage 53, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

310. spacer 1.3|25031|34|NC_011256|CRT matches to MH892376 (Streptococcus phage SW1151, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

311. spacer 1.3|25031|34|NC_011256|CRT matches to MH892379 (Streptococcus phage SWK3, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

312. spacer 1.3|25031|34|NC_011256|CRT matches to MG708274 (Streptococcus phage vB_SthS_VA214, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

313. spacer 1.3|25031|34|NC_011256|CRT matches to KY705289 (Streptococcus phage P9902, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

314. spacer 1.3|25031|34|NC_011256|CRT matches to HG424323 (Streptococcus phage 20617 complete prophage genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

315. spacer 1.3|25031|34|NC_011256|CRT matches to KY705267 (Streptococcus phage P7154, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

316. spacer 1.3|25031|34|NC_011256|CRT matches to NC_002072 (Streptococcus phage DT1, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

317. spacer 1.3|25031|34|NC_011256|CRT matches to MH937466 (Streptococcus phage CHPC875, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

318. spacer 1.3|25031|34|NC_011256|CRT matches to MH892356 (Streptococcus phage SW21, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

319. spacer 1.3|25031|34|NC_011256|CRT matches to KY705276 (Streptococcus phage P7633, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

320. spacer 1.3|25031|34|NC_011256|CRT matches to KY705281 (Streptococcus phage P7955, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
gctctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

321. spacer 1.3|25031|34|NC_011256|CRT matches to MH892357 (Streptococcus phage SW8, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

322. spacer 1.3|25031|34|NC_011256|CRT matches to AF085222 (Streptococcus thermophilus bacteriophage DT1, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

323. spacer 1.3|25031|34|NC_011256|CRT matches to KY705283 (Streptococcus phage P8922, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

324. spacer 1.3|25031|34|NC_011256|CRT matches to MH937485 (Streptococcus phage CHPC1014, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

325. spacer 1.3|25031|34|NC_011256|CRT matches to MH892378 (Streptococcus phage SWK2, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

326. spacer 1.3|25031|34|NC_011256|CRT matches to KY705280 (Streptococcus phage P7954, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
gctctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

327. spacer 1.3|25031|34|NC_011256|CRT matches to MH937472 (Streptococcus phage CHPC928, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

328. spacer 1.3|25031|34|NC_011256|CRT matches to MH937502 (Streptococcus phage CHPC1083, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

329. spacer 1.3|25031|34|NC_011256|CRT matches to MH937509 (Streptococcus phage CHPC1230, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

330. spacer 1.3|25031|34|NC_011256|CRT matches to MH937470 (Streptococcus phage CHPC925, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

331. spacer 1.3|25031|34|NC_011256|CRT matches to MH937478 (Streptococcus phage CHPC951, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagctcattaaattt	Protospacer
   . *..***** ********.***********

332. spacer 1.3|25031|34|NC_011256|CRT matches to MH937490 (Streptococcus phage CHPC1036, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgatttttttatcaagatcattaaattt	Protospacer
   . *..***** ******** ***********

333. spacer 1.3|25031|34|NC_011256|CRT matches to MH892380 (Streptococcus phage SWK4, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

334. spacer 1.3|25031|34|NC_011256|CRT matches to KY705265 (Streptococcus phage P7151, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

335. spacer 1.3|25031|34|NC_011256|CRT matches to MH892377 (Streptococcus phage SWK1, complete genome) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaattt	Protospacer
   . *..***** *.******************

336. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP054441 (Staphylococcus saprophyticus strain UTI-058y plasmid pUTI-058y-1, complete sequence) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taacatcaattttattaacaagttgtggaaaaaa	Protospacer
***.************* ******    ***   

337. spacer 1.3|25031|34|NC_011256|CRT matches to MN909556 (Staphylococcus saprophyticus strain 1005578 plasmid p1005578_vga, complete sequence) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taacatcaattttattaacaagttgtggaaaaaa	Protospacer
***.************* ******    ***   

338. spacer 1.3|25031|34|NC_011256|CRT matches to NZ_CP054445 (Staphylococcus saprophyticus strain UTI-056 plasmid pUTI-056-1, complete sequence) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
taacatcaattttattaacaagttgtggaaaaaa	Protospacer
***.************* ******    ***   

339. spacer 1.3|25031|34|NC_011256|CRT matches to LT546029 (Enterococcus phage VFW genome assembly, chromosome: VFW) position: , mismatch: 9, identity: 0.735

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
aaatatcaattttattttgaagttcttgcacctg	Protospacer
 *************** * ****** *  * .* 

340. spacer 1.3|25031|34|NC_011256|CRT matches to KY420199 (Proteus phage vB_PvuS_Pm34, complete genome) position: , mismatch: 10, identity: 0.706

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
aaatatcaattttattagcaaggtcaacaccgac	Protospacer
 **************** **** *** .*    .

341. spacer 1.3|25031|34|NC_011256|CRT matches to MH937491 (Streptococcus phage CHPC1037, partial genome) position: , mismatch: 10, identity: 0.706

taatatcaattttattatcaagttcattaaattt	CRISPR spacer
actctttgattttttcatcaagttcattaaatct	Protospacer
   . *..***** *.****************.*

7. NC_011247

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	125616 : 142672	18	Clostridium_botulinum_C_phage(40.0%)	holin,transposase,terminase	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NC_011247|125616:142672|DBSCAN-SWA
ATTAAATATATCTGCTCATACTAAAATGCTTAATTTTATCATGATATTTAAGACTTAAGAGCAAATAACAAGCACTAAGTGCATCAAGAGCATCATCTCTGCATCTAGAGAGGCCATTATAACTATAAATATCATTTATTACATTTTTATCTGTTATTTTTAAAAACTCGATACTACGGGCATTAAATAAGGGTATGAGAGTACATATTCTTACAAATTTATTACTTAAAGGTTTAACGGCTGATATTTTAAAATAATGATTCATATTTCGTCTTAAAGACGTCATAATTTTTGTTAAAAATCCATACCCATCAGTATTATCCCTATCTTCAATATAAAGGGTATTGATATTAAAATCCTCTGCAAACACACTAATTGCATGAAGAATTGATTCATCACTTATTGGCTTTTTATCTTGATAAATATAAGCATAATATTTATCACCCATCTTCTCAAACACACAAATAGCAGTATTATCCATACCAACAGAAAATGCAGGATCAATATACATAATTGGACTTTTAAATGTATATTCACAATTTAAAATTACTTCATTAAAACATGAATCAATACTGGCAGTCCATTCCCCAAGAAGCACACGAGCCTTATATGCGGACAAATTTTTATAAATTGCCTCTTGTGTTTTAATAAAATCTTTTGAATTTAAAGGATTATCATAAATATTAAAATTATATGTCCTATACACATCTCTATTATCAATATAATCAACCTTAAAGTAATGCGCAGGATGATCTGGATTTGTATCAAAAATAATTATACCTGGTTTTTGTCTTAGTCTTTTCATAATCTCAAGCAAAGTTTCTTTATGCATTAAAGTTGCTTCATTAACATAAACCAAAGCAGAATTACTACCCCTAATTTTTGTAAAAGAATCAATATTTTTACCACCATAAATATTAAGTGTAAGACCTGCAATAGTACATGTAACTTGTCTTGAATCTTTTAAAAGATATTCTATATTTAAAAGACTACATATTTTTTCTATCTGTTTTAATGTATTTGCAAGTAAAGTACCAATTGAACTTCCAACAATAAAATTATTAGTATCTTTGTGATAATGATCTCTATTAATAATTAAAAGTTTAATAAGCAAATATGATGCCAAGAATGTCTTACCACTAGATATTCCTCCATTAAAGATTATTTTGGAACAAAAATTATTATCAATATCTCTAAGCACTTCTTTTTGTTTTAAGGTTAAATATTTATTTTCAAACAACTTAAAATCAATTTTATTATCTTTATTTTGTAAAAAAGAACTAATATCAATATTAAATTTTTGCTTAAATTTTTTTTGTAATTTAATAAAAACAGGCAAATTATTTAATTGCACAACTACTCCAACTTTAATCCCTTGGAATTAAAGATTTTCTTTAATTTAAGTAAACATCCATAATCTTCTTTCATTTCATTTAAGATAATCTTTTTAGATAGTCGATTTTTTTTATAAATTTTATATCTTAAATCTAACTTCACTTTTTTACATAAGTCTTTATCATTATTATTGATATCTTTAGTTAATTTTAAAATCTCTTCATCAAGATTAATAAGCCTTTTTAAATCAGAATTAATAATAATTTGCTTATATTTAAAATGAGAATTTATATAAGAATTTGCAACTTTATAAAATGATTTATAAAAACTATCACGTTCCTTCTCAAGCATATAAGCTTGACATGTTGCATCACGAGCAAGAGCATCTAAATCAAAATTCAAGCAAGCATTAGTATCAAAATTATTTAAATCACTTGCAACTTCACCCAAAATATTAATCTTAGCTTTTAAAACAGTAGATTCTCTAACCCCTAAAACCTTTGCTATATCAGATATACTTAAATTTGATTTAAACAAAATACTATATTTTAATTCTTTATTTTTAAATACCATTTAAATAAATTGTAAACAAATTTTTACAAAAAAACAAGAGTAATTTAATTCTACTATATCAAAACACTAACTTTATCAAAAAAAATAAAACCACAAAATAGATATTGGACTAATCCAATATCTTAAGAAAAGGAGAAAAGCATAGTTAAAAATCATTCTAATGCCAAGCTTCATCATTAACAAACAACTCAACTTTAAATACAGTCTAACATAAAAAACAATTTAAATAAACAAAATTTAATATTTTTTGATATATTAATATAATAATGTATTAAATTATAAAGTCAAAAAACATACAAAAACATTAATCACAATCCTCTCACGTCAAGAATTTTTGTCTTGACGTGAGAGAACTCACAAAAATATTCCTAACAACTCTTAAATATTAAAGGGTTTATTGGAAACTCTGGCCTCAAAGTACCCCAATAAACCCTTTAAGGTAACAGGTCCTTATATTAAGAGTGACACATTGCATGTCAATCTGTACTAACTATAATATATAACAATTTAAAACATTTTGCAAACATTTTTTTAAAATTTTTTCATTTTTTTTAAAAAACATCAAAAAAAAGCAAAATAATCTAATTTATTGATAAATAATACAAAAAAATCTAATTTATTACAAAAAATATAAATTCCATCTTAATAATTTTCATAATTTATTAGATTTATTTCTAAAATCTCTGCTCTATCCATATAATAAATATGTAATAAATTTATTTATATAAAATTCAAAGACTTTTAAAAATAAATCTAAATATAATCCCATCAAAATACAATCAATTAATTTTTCACTCTTTTTGAAGATTCAAACTGAGTCACTATTTTTGCTAAAAATTCTTTTTCATCTGAGAAAACTCTCTCTAAAAGAAAACTCGTAAGTTTGGCATTTTTTTTATAAAATGCATAAGCATCAGGACATTTAAGCTGAAATCTTAAAGGTCGCAATGGATTCTGCTTAGATCGTTTTATATTAACGCCCTCTTTATTTCTTAGCAAAAACATAGTCCCATTAATACCATTGTTAATAACATACTTCTCTTCAACAATTCCTTCTTCAATAGCAGTGGCTATTTTTAAATATTTATATGTCTGAGTTCTAGCAAGTCTATAATCTTTTGCAAAATCATCAAAACTGGCATAATTATCAAGTTTATAATATTCATTATCTTTAATTTCTTTTAATACTTTCATCGCTTCAATTTTACAAAAAATTTCTTTTTGAAAGTTAATTTTCAATCTCTCTTTAAGCTTATTATAGTGAATAGATACTTGTTCTTCTGGCGAAATATTTTGAGTTAAATTCCTCTTATTAACCTCTATTCCCATTTCCAACCCTCCTTTGCTTTTACGTACACTAAGTGTACGTAAGTTATAATGTAAGCTTAAACAACAAAATTCTTAATCTTGTCCATCAAAACTGAGAGTGTGTTTTGATACTCTCTTATATAATCTTTATTTAAATCAAAAACATCATTCCTAGCTATTTTTCTATTTAAATCTTCCCTCTCTGATATTGTACCCAAAAAATTGTCATTTTCCTTTAAAATATTTAATAACTCTTTATGCGTATTATTTCTTTTGAATTTAGTATTAATCAAATAAATAGGAGCTTTGATGGATAACTTGTCTATAAAAAAATTAAACAAATCCAAACTTTCAACTGCCCACTTTTCTGCTGTAATTGGCACTATAATGTAACTGCTACATACTAAAGCATTAGTTAGCGTAAAATCTAAACTAGGATTAGTATCAAGTATTATATAATCGTATTCAAATTCTAATAATTTTAATTGTTCTTTTAATCTAAATTCTTTATACGGAATAGATTCAGAATTAAATTTATGCAAAGTTAAATAACTTGGTATCAAATCCAAATTGCTATTAACATTTACAACAGCATTATCAATATGCAAATTAGATATTAAAACCTCATATATATTTCGATTAAATAAATCTACTCCTCTTTCCTTTATTATCTTAAAATAATAACTAGTGGTCGATGCTTGGGTATCTATATCAATAATTAATACCTTAAAAGATTGAGATAGGAGAGTAGCAAATATTAAACTAGTTGTGCTCTTGCCTACTCCACCCTTAATTGATGCCACTGTAATTACTTTTGTCTCTTTTCTATCCATCTCGGAACAATACCCCCTTCCGGTAATTTTTTTCCATAAAACGCATAAAGTTCCCTCTCTAATTCTAGGAGTATACTCAGTAAAGTCTGATAATAGGAACTTCCAATCTTACCCTTTTTTAATAAATTATGTAGCCCACTTAGATAACAAAAAACACCACCTTTCTTAAATCTGAATTCAATATATTCACACTTTCTTAAAGTATAAGTTTCTCTTTTATTGAAGTTTTTTACCAAAAATGCTTTGTCTAATTTTTTAATCCCATAGTAAATACCCAAAAAATTATCATCATCTCGTATGGAAAATAAATGAAACATACTGATATCTTCTATGTTAAAAATTCCCCTAAGGGATATAAAAAATTTAGTAGGTTCGTTCTTGCTTATTCCAAACGCATAAAAATCATTAAATATTTTAGTATGATATATCTTACGATTATTAATCTCTTCTACTTTAGAAAAGATATTTTTACCCTTTTTTTGATTCTTGGGATCTATTTCCTTTTTCTTCTGCTTCAATAACTCTAGTAAAGCCACCATCCTTCCTTTTCCTTGGTATAATAAATTTTACTTTATTGTATCAAGCAGTTCGTAATAATACGTATTATCAACTACTTTACTATATTTCAATTCGTCTTGAGCATTAATAAATTTCTTTAAAGTTGGTACCAATATGCCAATATCAAATTTATGCCTCAACTGTTCTAATAATATACTAAAAATATTGTTTTTTATATCATCTCTTTCTTTTGTTTTTGATTTGCATTTTTCAGTGTTCTTTTTTATTTTTTGAATTAACAAATCTAGATCCCTATATTTGTCTTGTTCTATAATAAAATGGGGCTTGTTTTTGTATCTTTCATATATTTTGTTTATTTCTTGATTTAGGACATCTTCTTTATAATTTTGACTTTCCAGCTCCTTTCGTTTTAAGTCCAATATTTCTTTAAGTTCCTTCTGCTTAATCTCCTGTTTTTGAATTTTGCTTTCAGTATTTTTCAAATATCCCATCCCTTCTAAAAAGCCCTTAACACAGTTGGGAGTACCCTCTATTAACTTTCCTTTGAGTAAATTTATTTCGTCTAAAGATAGGACTTCTATGGCTCTTTCATGCTTTTTGATTTCCTTTATAAGTTCTATCTTTAAATCTTTTTCTATTTTTGAATTTAATAAAACAAGAGGAAGATCAATTTTAAAGTGGCATTTACTTATATACTTTTTTATTATTCTCTCTTCTATCTTTTTATTATTATTTATATTATTAATACACTCCCATTTTGGACTCCCATTTTCTTGAATATAAGTTTCTATCCTCTTTGTGAATTTGTCTATCTTTTCTTTTTTTATGTTTCGGAAATATTGATTTATCTTGGTATGACATGTTTTTTTTGGATATTTTAGCTTATAATAAATTTCGCTGCCGCATTGCTTACCTAGATGTTTGCAATAGTTGAGTGTGATTTTGTATTTTTTCTCAAGTTCATATAGATAATTTTGTAGTGTTTTTATCTTGACTTTCTGTTGTTTGTTTCTAGTTAAGTTTCCATTAAAAAAATATAAAATGTTTGTTTGTGTATATTGCTTTAATTTTAAATTCATAAAATTAAGTGTTGATATAAGTACAATCAAGTTGTATTGGTATCTGTTGGTTTTGCCTTTTATTTTTTTGATTTCCATTGTTTACTCCTAATATAAGTATTTATAAGTCTTAAGTTAATTAATAATACAATTTATCTTAAAAGTAAATACTTGTTTTAGCAAATATGAAAATAAATTAATATTTATTTTTTTATAAGATTAAATATTGTTTATATTTTTTTAATTGTGCTTTATTTCTTTAAAAAATGCTTTACAAACTTGTGTTTTTGCTATATTATAGAATTAAACACTTGTATTAAGAGCAAATAAGTACTAATAATTTTTTATTTAAAATTAATGAGAAATGGACGAGCCTTGTTAAGGCAAGTCATGTAAAAAAATTTCATGGATGAAATTATCAATTTTGTGTTTGAGTGAACTGTTATTTCTAAATCAAAGATTATAGAAATAGCTTCTTGTTTCATCCCATGATAGCTTTTTAGGTTCTATAAGAACGGTCATCCACTAGAGCATGGTCCACAAGCTTTACTTCAGGCAGTTCCTGCCTTAGTTTTTATTTCCTTATAATAATAAGCTTTAAGATTTAGAGCTGCATTTATATCTCTATCGTGCAAAGTGTTACAACTCCTACAACTCCACCTAATATCACTTAATTTTAGAGTTGTATTTTTAATACCGCAATTGTTGCATAGCTTGCTTGATGGAAAATATCTATCAACTTTATGCAAATAAGATTTAGACCACTCTGATTTATATGATAATTGTCTTACAAACTCATGCCATCCCAAATCATTAACACTTTTGCCAAACATTCCTTTTTGCATACTTTTAATTGATAGGCTTTCTATTACTATATTTTTATAATTAACTACAAAATAATAAGATAATTTATGTAAAAAATCTTTTCTTTGATTTGAAATTTTCCTATGCAATTTGGCAACTCTTAATCTAGATTTAGCTCTATTTCTAGAGCCCTTTTGTTTTTTTGATAGTTTTATTTGGCATTTCTTGAGTTTACATTCATTTTTTAGTAAACATTTGGGATGATTGATTTTCTCACCCCCACTACTTACTAAAAAATGCCTCATACTCATATCAATACCAACTATCTCTTTTTTATTGCATTTAGTTTTATCGTTATTTTTAACATCTAAGCACTCAACCGCTACTGAAATGTAATATTTATCATCAGTATCTTTTTCTACTACTACATTTTTAATAAGTTCATTGCTTTTAATTTTCCTATGTAGAGCTAATTTTACAAATCCTATTTTAGGTAGCTTTATATAATCATTTTCTATTCTTATTGAGTTTTTTTGATTATTAGTTCTAAAGGTTTGTCTATTTTTCTTACTTTTATATTTAGGAAATCCTTGTGTTCTATTTCCTTTTTTAATTTCTCTAAAAAAATTACTATACGCAGAATTTAAGTCAAGTTGGGCATTGCAAAGAGCCAAACTATCAACTTCCTTTAAGAATAGAAATTCTTCTTTATATTTGCTTGGATAAGTAATAAGACTTTGTTTATTTTTTTCATAATAATCTTTCTTATCACTTAACATTTTGTTATACAAAAATCTTACGCACCCAAATACTTTTGAAAAATATTTCTTTTGATTAGCGTCAGGATATATTCTGTACTTATAAGCTTTATTAGCACTCATATGTTTTATTATTTTATAATATTTTATACTTAAGTGTATATGTCACACAAGCTAACTTTTAATAATCACTGCGTATATTCTATTAATTATCACCTAGTATTAGTTACTAAATATAGGCATAAATGCATAAATGCCGAGCTTTCATCTTCTCTTTACCAAATAATACTTAATATATGTTCTTTATGGAAAATAACCCTTAATGAATTCAACCATGATAAGGATCATATTCATTTATTACTAGAATTTACCCCCAATATTCAACTTTCTACATTTATCAATAATCTAAAAACAGTATCTTCAAGGCTTATAAGGAAAAAATATTCTACTCATTTAGATAAATATTATTGGAAACCTTATTTTTGGTCTAGAAGTTATTGTCTTATTTCTACTGGAGGAGCCTCTATTGATATCATCAAAAAATATATTCAAAATCAAAATAAATCCATTTATTAACAAAGAATTCTCCACCTATAATTTCTATGAAGTTTAGGTGGAGAATTCTTTGTTATTATTTGTTAAATTTTGAATTAACCTTTATCCTTCAGTATTTAAATTAATTATATTATTTGCAATAAAGCTTAGAAATATAATTAATTTAATTTAAAGTCCCACATTGGGACTTTAAAAAAAGAGTAAGAAGGATATTAGTGTATTTTTAAATTTACTTTTTTAACTTGCTACATTTTTTATATACATCAATAGCTATGGGTTTTGTTGTGTTGATATAATGCTTTAAATGTTTGATATTTTCTTTTATTGTTTGCAATGTATGTTCTTCTTTTAAATTTTTCGGATCAAATAGTGTAAATGGTGGGAAATTATAATTTGGAAATTTTTGTCTAGCTCTAATTAAAAAAGTTTCAAGATATAATACATAACTTGTTAGTTGTGTTTCATATATGCTTAAGTTTTTAAGTGTAGGTTCAATAGGTGGCTCAGGTTCATTTGTAAGCGATGCTATTGATTTGCAACTAAATGTAATAAATTGTAATAAAATGATTAGGCTTACTATTGATTTCTTATTCATTTTTGCCCTCCTTTTTTATTTTTACTGTTTATTTTGTCCAATTCTTCTTGTAGCAATTTTGTTTTAATTTCAATAAGATTATTGCGTTCAAATCGCAAGTCTTCAATCAAAGTTGTATCAGCATTGGTGTTAATTGCATCTATGAGTTTTGCTATTTTGCTTAATATAGTTTCAAGCTCTAGTACAATTTGTTTACTTTCTTTCATTTCCATTTTTTGTAGCGATCTCGTGTAAATATTATTCATATATTTGTAAATATCGATTACTTTTTTGATACCAGTTTGAAAAAGTTCGTCATCTTGTGTATCACTGTATACAAAAAATTCTATTAGGTTTTTTAAGACAATTAGTCCAAGTTCGGTATTAGTTTTATTTAACATAAATATTCCTTAAATCTCCTTATTTAAATAAATTTTTTACTTTTTATTTTTACTTTGTTTATCAATTAAATACTTGAGTAAATGCTTAATAATTTTAACTATTTCAGCTAATACAGGTTTTAAGAATAAAGCCAAAGGGATTAGTATAAATAACGTAATGATTCCAATAATTATGAGTTTTGTCTCGGCAATATTTGATAAAAAGTCAAATACTGTATTCATATTTTCCTCCATTTTAAATTTAAGTTAGATGTATTTTTTTTTAGAAAGAGTAAACCATCAATTTTGTTATGTTTATATGTTAACATATTTTTAACAAAAATTAAATATATGCAAAAATTATAATTTAAGAAGATGAGGAACATCTTGATTTTCATCGTTGTTATATATATAGCTCTTTAGTTTGTACCATCCGTCAAGAAGAGTGATAGTTGTGTTATGTTGTTTCCCGGTGTAGGAATATATAATATTGTATTGTGATGCATTACTATTCTCTGAAAATCTCAAGTAAATTATTTTAGTCATGGTATTATTTGGATATTTATCCCTTGTAAGGGCAAGCATTATTTGAAGATATATATTTTGTTCTTTATAATTTCTCGGAAACCTTAACTCTACTTTTTCGCCTGTTATCTCTATTTTTAATAATTTGTCATAAAATTCTTTTAAAGTATAATAAGCATCGTGTGTAGGTTGTATGTTCCAATATTGAAAATCATTAGGAATTCCTTTTAAATAACGATATTCTATTCCTAATCTATATAGTTGTTTGTTTGTAGGATGAAAAGCAAGAAATTCTAATTCCATGTTAGGATATTTGTATTCTGGCATTTCTGGTATTATAGATTTTAATTTTGACTCTAGTTCGTGATTTTTGAGATAAGAAGTATTGATATTGTTAGTAATGCTTGTAATTTGTTTTATTTGTTCAAGAATTTTGTCTGTCTGGTTTTTTAGGTTGTTTAAATTAGTGATTTCTGCAAAAATTTGTTTTAATTTGTCTATAAATGTTTGAAATCCAATTAATTCAAAATCCTGTCTTTGTGGATTGTAGATTGATATTTTGCTTGAATTTATGTTATCTCCAGCTTGATTTATATTTTGAATCAATATTTCCTTGATTTTTTTTAAAACATCATCAAGTGTAATTTTGTTTGTTTCGTTCTTAAGGCCTATTAGTTTAGATATTGTTTTTATATACATTTCGTCTACATGAGATTCGTATTCAAGTAATTCTTTAGATATTATTTCTCTAATTACTTGTTTAAAATATTCAATACCTCTATAAAAGGTATCTTCTTGAATTTGTGTAAGTAAATTTTTATATGTAATTGCATAAGTCTCTTCAACAATATCGTCAATGGGAATTAAATCATTTTCATTGACTGTGATTTTTCTGTTAAAATCTTTTATTTGTATGCTTTCTTCTGTATTGTCTTGTTCATTTTCCATATACCCTCCTTGTTATTTTGTTTTTTATGATATGAATTTATTTTATTTCTTTGTTATTAATATCAAAAATTTTAATGGTTCTCCCTGCAGGAATTAGAGATTTTATAAATCCATAAGTTGAATTTTGAAAATCCTTTGGAATGTAGTTGGATACAAGTTTTTTAAGTTTGCCTTTATGTTTAATCATAATAGTTTTTAATTTTCCTTTAATTTTACCGGCTATTTTAAATTTAATTGGTGATCTTATATGTTCAAGTAATTTTATGATAATCTCGCCAGGTATATTTGGATTAACATTAATTTCGATTCTTGCATGTAAAAATGCTTTAAATATTAAATGAAAACTTTCATCTGTGCCTATTGATTTTATTGCAAATGTTAATGCTTTGATATAATTGATTAGATCTTTTTTAAGTCCTTTTTTTAAATGAGATGCATTAAATAGTGATAGCATTAGTAATGCAATGTATCTTGAATTGATACTTTCATCTACATTAATAGAAGCAAAATTCTCAAGTAATTGATTAAGCTCTTTTAATAATTGTTTTTTAAAATCAAGTTCGCTTTGTATAATTTTTGCAATCTGTGTATTTTGTAAAAAGTGTGGAATTGTTTTCATTTCTTATTCTCTTTCTATTATGAGCCTTGAATTTTCATCAAAAGAAATAAGTTCGTTTGCTTTAATTTCAATGTCATTGTTGAATTGAAATTCACTTTCTTTGATTTCTGTTATTTTGGTATTTAAATTTTCTTTTGTATGAATACCAATTTTCATTTTTCTAATTCCTTGTAGTAAACTTACAGGACCTAACAAGTCTTGATAGCAAAAAGAGATACCCATATCTTTGTATTTGTTTTGAAATATTTTTTTATAAATTTCTCTTATGTTTTCATCTATTTCTTTGTGGATAGATTCTGTTTCGGTTTTATATAATACTTTTAAATATGCATATTTAATTATTCCCAAGCTAAACTTATATGTTTTTTGTTGTCCGTTTTTATTGAAAAATTCAAGTTTTATTTTTCCTCTAAATGCTGTTCCACATGGAGCAGTATTATATATTGCTTTCCAAATTTGTATTTTTATATCTTGTGTAATGGCTGATAGTGTTCTATATTCTTTCGTAAATATTATGTAAATTTGTATTGTTCCTGCAGAACTTATAATATTTGCGTATTCTATTTGTGGAATTGCTAGTAATGTTTGTTTGACTGCCTCGTAAGTTGAGCTTTTGTGTATACTTAGGGAATGTTGTAGTTTTTTGAAATATTTTCCTCCTTCTTTGAGTGTTTCAAATAATTCATTTAATGCTTGAATTATTTCCATGTCAATGGCAGAACTTGGGTAATTGATTATGTCAAAAATGGAATTGTCTTTGATAAGAATATTATATTCTCTCTTTAGTATTTCTTTTTTTATATTTTGTATTTCTTCTATTGATTTTGTAATGATTCCAGTTTCTTTGTCAAATACTATTCTCATAAGTTATATTCCATATTTACAGTATCTCCAGCTAAAAAAAATTGTAATATTATTTTTTTATTCTTTTTTTTTATCTTGATATTTAATATGTCTATGTCTAGGGTTTTTAGTGCATTTGCAAAAAAGATTTTAATTTCTTCTTCTTTTTGGTTCTTTAAAAGTTTTATGAAGAAATTAAAATCAAGACCATAATTTTTGTCATAAAGACTGCCAATAGGTGTTTTTAGATATAAAAGCAGTCTTTGTTTTCGCTCATCAAGGCCATCTACTATTTTTAAATCGTTATTAAAAATTATTTTAAATTCATTATCTATTTTAATATCCATTTTTAATTACCTTAGGTTACTGCCTAGGTAATAATTATAACATTTTTAGCAAAAATAATATATTTTTTTATTAAAAAAATCAATTTATTTAAACATTTTATTTAAACAAATTTAAATATTAATTTAGATTTGGTATAAAAAAGAGACTCTTTACTTTAAAGAGTCTCCAAGGTGAGAAGAATATAAAAATGAGATTCGTTGATATTTTAAATAAAATTTAATTTTCTTGCTTTAATTTCTTCATTTAGAGCACACAATCTTTAAATAAGAAATAATTCTTTTTCTTGTGATGTAAATTGATATCTGTAGTTGTTGACATTTTTTAGTTGAAATTTTCTGTAGTACTTTTCTTTTGTAAGTGCATCACAGAAAAATTTTAAGAGAATAAACGAAGATAATATTATTTCATACACTTTATAACACTTTAACCTTATATAATTGTTTTTATTATATGTCTTGTATTATACATTTTTAATTAATGATCTTCAATAAGAAAAATATAAAAATTGATGGTTTTTTTATATTTTTTATTATTTGGTTTAACTTATAAAGTATAAATTATTTTGATTGAAAACTTATTAATTTTTATATAAAACCAAATTAATGATTTTAATCTAATTGTTAATAATTGATAGTGAGATTTGCTTGTCATAAATTTTAAAAATCATTGGAGCATATCATTGGCACTTTAATTTTCATAATTGCAATTTTGAGTATTTATAGTTAAATAGAATTATAATTTCTTTTAGCAATATGTATAAAAATACATATTGCTAATATAATCACTAGCAAATAGCTAGTGATATTGTTAATATATAAGTTCTAAAAAGAAGTTGCAAAAACTTTAAAAAGGTTGCTAATGATTATAATTTTTAATTTTATTATTGCTTTCACATATTGATTATAAAGCTTACCATTCCTCTTCTCTATTATACTCATCTTGGTAATATTCATTGTTGCTGGAATCTTCTTCATCTAAAGATGAACATGAAAGCATAGTGAGTAACAACATAAATAAACATTTTTTCATCTTTTATCCTCTATTTTGAATTTATACCAAATATCAAGATATATTTAGTACAATTTAAATGCTATCAAAATGTATTATGAAAGTCTAGAGTTTAAAGTTTTTTGTTTAAATATTTATGCCCAACATTTATATGCTGAGATAAGAAGCAGTATTAAAAAGCATTTTTGTTTTATTATTTATTTTTTTGTGATGTTTAGATTTTGTTTTGTTGACATTGTGGTTTTAAAATAGAAATTATAAATTAACATTGTAAATAATAAAATTAGTGATATGTTTGTAGTATTCTTGTTGGGAAAAATGCGAGGTGAAGAATGCAGAGAAATAATATATTATTAGCTGTTATTTTAATGCTATTTATAGGTTGTGATTTAGATTCTGGTATTGGTTTGTTAAGAGGTGTTCTTGATAAATTGGATGGAAAGTCTATAAGTAGTGATGGAATGATTGATTTTAAGAATGATGATATTAATGGAATTAATGGAAAAGATAAAGGAAATTTAGTAAAAAGAGAAGAGCTTGTACCTAATGTTGAAGGGCTTGTACCTAATGTTGCTGAGAAACAATATTTGGAGCCAGGTGATATTGATATTAATGATATTGATATTAATGATATTGATAATATTGATGTTGATAAAATTAATGATTATACCTACCCTTGGGATAGTAGTCCTAAATCTTTTCGTATTTTGCTTAAAAAATTAGAAAAGGCACAGCAAAGATTGCAGTATGTATATGATATTTGGGATAAAGCTTGTTCTGAAAGAAATATTGCTTATGAACTTTGTAGTAAGGCTCTTGCTGCATTGAATGAATTTGTTAAGGCTAAAGGTGGAAATAGCATTGATTATTCCGATAATAAATATTTTGAACTTACAAAGGAAGTTGATAGGAAATGGGATGATTATCAAAAAGCTGCTGAAGAGGAAAAAAGAACTCGTGAGGATGTAAGGAAAGCCGATGATTATTGTTTGAAATTGGAAGCAACTATAGAGGTTTTAATGTCGCCTTTTATGCCTGAAAAACAGAAATCTCAAGATTCTTCTCCAGAACTTCAAAGTGAGCAAAGTGAAGAGTTGAGCAAAGAACAGCTTGAAAGTTAACATTTGTTTAGATATGCTGGTTGATTTTTGGGAATGGTAATCTGTATAGATTATCTATTAGATTATTTATTACTATTCATTGTAAATTTTATAAGTGAATTACCAGAAAATGTTTATTTCCTGGTAATTTGTTATTTGTTAAAAGTAATTTCTCTAAAGATAAGGTCAAAGTTTAAAATTTAGTTTATATGTGTATCAATTTAATATAAATGTTTTATTTATTTAAATTTAATAATATTAATTTAAAAAGATAATTGTAATCTTTTAAAGATAGGTATACAATGATAAAAATCAATTTTAAGGGAGTTAAACTTGTGAAATGCAAGTAATTCTATGATTATAAAATCAATATTAATTAGTGTTGATATATTGAGTACTTTAGAGTAAATGATTTGTGGGTTAAATTGTTTTTATATAGAATGTTAATTATACTCTATATTGTGTGGTAATATTGGCATGTGGTAGTGGATTAATTTTAATCTAGAAGGAGATATATTTATGGAAAAGGATTTTTATAATTCAGTTTTGTTTTTATTGTTACTTACAGATATGAGTTGTGGGTTAAGTACTTCTACAAGTAGTTCTAAATTCCCCGATGAAAAATTGCCTTTAAAAAAGTTTACTAGTGAGAATGTAGATGTTGCGAAACCAGGTTTTGAGAGTCAAGATTTAGAATCAAAATTTGATTTAAAAGAAAGAAGAGTGGAAGCAGGGGGAAGTCAAGGAGGGATACGAGAAGAGAAACCAGAAGAGATTGAGTCAATTAAAAATTTTTATTCAGCTCTTATGTATAATGATAAGGTAGTATTTCATTCTGTGCAAAAAATGGCCAGTGGTTTTGAGGGTTATAGTGATAGTGAGGAATATAAAGATGATCAACCTAGATTTTATCGTGTATGGGGTAATTTGGGTATTAATAAACTTTCACATATTATGTCAGAATATTCTCGTCTTAATAAGAAAAGAAGTGACATTCAATGGATGATGATGAATTTTGATATTAGAAAGATAAAAGAACATTTTAATAATAAGTTAAATGATTGCGATCGTAATTATGCATTAGAATTTAGAGGTGCTTTTCAAAAAGATGATTTTAATACAATCTATGATGGTATTGTTTCTGTGATGAAGGCTTATGAGGAGAATTTAGATGTTTTTGAGAGTGATTATGAACGTCTTAGAATTTTTAGACGTATACATTCTGGTTTTTCTGTAAAATTACGTTCATCTTTTGATTATATAAGCAATGAGTTAACTGACTTTAATGTTGAAGATGAGTCACAATCTAAGATGTATTTTTATTATGACTTTTGTGTTTTGTTTGGAGATGAGACTGGTAATAATCGCTATTTGCAATTTGTTGAAAAATGTGAGCCGATTTTTGAATTAATGTCGTCACTTCGAGAAGAAATTAAGTTTGAGATTGAAGATGATGCTGTAGCAAGTCAATTTACTGAAGTTTTTAATGGGCTTGAAGATAGGTTTAAATTATATTTAAAAGAAGTGTTTCCTAGGATTGTTTCTGATGATATGTCTTTTGAAGGTTTGGATAGTTATGAAACCGATTTTGAAAATTTGAAAGCAAGGGTAATGGACTATTGAGTTGTAACATTAATATTTAGATATTAATGGATTTTGGATATTAAATTATCATGCAATAAAAGATAGTTTAAAATATTCAATAAGAAAATTTGAGGATTGTTTAATTTTGTCAAAAAATTAAAAAGAATACTCCACCTATAATTTCTATGAAATTTAGGTGGAGATGAATTTGTAACGTAAGTTAAAATATAATATAATAATTTTAAAAAATAATGAGTGTTAATAAAGCTTATAAGTACAGAATATATCCCAACGCCAATCAAAAGAAATATTTTTCAAAAGTATTTGCATGTGTAAGATTTTTGTATAACAAAATGTTAAGTGATAAGAAAGATTATTATGAAAAAAATAAGAAAAGTCTTAGTGTTAATCCAAGTAATTATAAAAATGAATTTCCATTCTTAAAGGAAGTTGATAGTTTGGCTCTTTGCAATGCCCAACTTGACTTAAATTCTGCATATAGTAATTTTTTTAGAGAAATTAAAAAAGTAAATAGAACGCAAGGATTTCCTAAATATAAAAGTAAGAAAAATAGGCAAACCTTTAGAACTAATAATCAAAAAAACTCAATAAGAATAGAAAATGATTATATAAAGCTACCTAAAATAGGATTTGTAAAGTTGGCTCTACATAGGAAAATTAAAAGCAATGAAGTTATTAAAAATGTAGTAGTAGAAAAAGATACTGATGATAAATATTACATTTCAGTAGCAGTTGAGTGCTTAGATGTTAAAAATAACGATAAAACTAAATGCAATAAAAAAGAGATAGTTAGTATTGATATGAGCATGAGGCATTTTTTAGTAAGTAGTGGGGGTGAGAAAATCAATCATCCCAAATGTTTACTAAAAAATGAACGTAAACTTAAGAAATGCCAAAGAAAACTATCAAAAAAACAAAAGGGCTCTAGAAATAGAGCTAAGTCTAGATTAAGAGTTGCCAAGTTGCATAGGAAAATTTCAAATCAAAGAAAAGATTTTCTACATAAATTATCTTATTATTTTGTAGCTAATTATAAAAATATAGTAATAGAAAGCCTATCAATTAAAAGTATGCAAAAAGGAATGTTTGGCAAAAGTGTTAATGATTTGGGATGGCATGAGTTTGTAAGACAATTATCATATAAATCAGAGTGGTGCGGAGCCTATTTACATAAAGTTGATAGATATTTTCCATCAAGCAAGCTATGCAACAATTGTGGTATTAAAAATACAACTCTAAAATTAAGTGATATTAGGTGGAGTTGTAGGAGTTGTAACACTTTGCACGATAGAGATATAAATGCAGCTCTCAATCTTAAAGCTTGTTATTATAAGGAAATAAAAACTAAGGCAGGAACTGCCTGA

Protein sequences of DBSCAN-SWA_1

>NC_011247|125616:142672|133587_133953_-|WP_012539450.1|DBSCAN-SWA
MNKKSIVSLIILLQFITFSCKSIASLTNEPEPPIEPTLKNLSIYETQLTSYVLYLETFLIRARQKFPNYNFPPFTLFDPKNLKEEHTLQTIKENIKHLKHYINTTKPIAIDVYKKCSKLKK
>NC_011247|125616:142672|136407_137268_-|WP_012539454.1|DBSCAN-SWA
MRIVFDKETGIITKSIEEIQNIKKEILKREYNILIKDNSIFDIINYPSSAIDMEIIQALNELFETLKEGGKYFKKLQHSLSIHKSSTYEAVKQTLLAIPQIEYANIISSAGTIQIYIIFTKEYRTLSAITQDIKIQIWKAIYNTAPCGTAFRGKIKLEFFNKNGQQKTYKFSLGIIKYAYLKVLYKTETESIHKEIDENIREIYKKIFQNKYKDMGISFCYQDLLGPVSLLQGIRKMKIGIHTKENLNTKITEIKESEFQFNNDIEIKANELISFDENSRLIIERE
>NC_011247|125616:142672|138935_139724_+|WP_012539456.1|DBSCAN-SWA
MQRNNILLAVILMLFIGCDLDSGIGLLRGVLDKLDGKSISSDGMIDFKNDDINGINGKDKGNLVKREELVPNVEGLVPNVAEKQYLEPGDIDINDIDINDIDNIDVDKINDYTYPWDSSPKSFRILLKKLEKAQQRLQYVYDIWDKACSERNIAYELCSKALAALNEFVKAKGGNSIDYSDNKYFELTKEVDRKWDDYQKAAEEEKRTREDVRKADDYCLKLEATIEVLMSPFMPEKQKSQDSSPELQSEQSEELSKEQLES
>NC_011247|125616:142672|135822_136404_-|WP_012539453.1|DBSCAN-SWA
MKTIPHFLQNTQIAKIIQSELDFKKQLLKELNQLLENFASINVDESINSRYIALLMLSLFNASHLKKGLKKDLINYIKALTFAIKSIGTDESFHLIFKAFLHARIEINVNPNIPGEIIIKLLEHIRSPIKFKIAGKIKGKLKTIMIKHKGKLKKLVSNYIPKDFQNSTYGFIKSLIPAGRTIKIFDINNKEIK
>NC_011247|125616:142672|130230_131340_-|WP_012539447.1|DBSCAN-SWA
MEIKKIKGKTNRYQYNLIVLISTLNFMNLKLKQYTQTNILYFFNGNLTRNKQQKVKIKTLQNYLYELEKKYKITLNYCKHLGKQCGSEIYYKLKYPKKTCHTKINQYFRNIKKEKIDKFTKRIETYIQENGSPKWECINNINNNKKIEERIIKKYISKCHFKIDLPLVLLNSKIEKDLKIELIKEIKKHERAIEVLSLDEINLLKGKLIEGTPNCVKGFLEGMGYLKNTESKIQKQEIKQKELKEILDLKRKELESQNYKEDVLNQEINKIYERYKNKPHFIIEQDKYRDLDLLIQKIKKNTEKCKSKTKERDDIKNNIFSILLEQLRHKFDIGILVPTLKKFINAQDELKYSKVVDNTYYYELLDTIK
>NC_011247|125616:142672|129639_130203_-|WP_012539446.1|DBSCAN-SWA
MVALLELLKQKKKEIDPKNQKKGKNIFSKVEEINNRKIYHTKIFNDFYAFGISKNEPTKFFISLRGIFNIEDISMFHLFSIRDDDNFLGIYYGIKKLDKAFLVKNFNKRETYTLRKCEYIEFRFKKGGVFCYLSGLHNLLKKGKIGSSYYQTLLSILLELERELYAFYGKKLPEGGIVPRWIEKRQK
>NC_011247|125616:142672|134369_134555_-|WP_041177821.1|holin|DBSCAN-SWA
MNTVFDFLSNIAETKLIIIGIITLFILIPLALFLKPVLAEIVKIIKHLLKYLIDKQSKNKK
>NC_011247|125616:142672|137264_137594_-|WP_012539455.1|DBSCAN-SWA
MDIKIDNEFKIIFNNDLKIVDGLDERKQRLLLYLKTPIGSLYDKNYGLDFNFFIKLLKNQKEEEIKIFFANALKTLDIDILNIKIKKKNKKIILQFFLAGDTVNMEYNL
>NC_011247|125616:142672|132965_133379_+|WP_081434523.1|transposase|DBSCAN-SWA
MSHKLTFNNHCVYSINYHLVLVTKYRHKCINAELSSSLYQIILNICSLWKITLNEFNHDKDHIHLLLEFTPNIQLSTFINNLKTVSSRLIRKKYSTHLDKYYWKPYFWSRSYCLISTGGASIDIIKKYIQNQNKSIY
>NC_011247|125616:142672|128306_128852_-|WP_025401297.1|DBSCAN-SWA
MGIEVNKRNLTQNISPEEQVSIHYNKLKERLKINFQKEIFCKIEAMKVLKEIKDNEYYKLDNYASFDDFAKDYRLARTQTYKYLKIATAIEEGIVEEKYVINNGINGTMFLLRNKEGVNIKRSKQNPLRPLRFQLKCPDAYAFYKKNAKLTSFLLERVFSDEKEFLAKIVTQFESSKRVKN
>NC_011247|125616:142672|134672_135785_-|WP_012539452.1|DBSCAN-SWA
MENEQDNTEESIQIKDFNRKITVNENDLIPIDDIVEETYAITYKNLLTQIQEDTFYRGIEYFKQVIREIISKELLEYESHVDEMYIKTISKLIGLKNETNKITLDDVLKKIKEILIQNINQAGDNINSSKISIYNPQRQDFELIGFQTFIDKLKQIFAEITNLNNLKNQTDKILEQIKQITSITNNINTSYLKNHELESKLKSIIPEMPEYKYPNMELEFLAFHPTNKQLYRLGIEYRYLKGIPNDFQYWNIQPTHDAYYTLKEFYDKLLKIEITGEKVELRFPRNYKEQNIYLQIMLALTRDKYPNNTMTKIIYLRFSENSNASQYNIIYSYTGKQHNTTITLLDGWYKLKSYIYNNDENQDVPHLLKL
>NC_011247|125616:142672|131792_132926_-|WP_012539448.1|transposase|DBSCAN-SWA
MSANKAYKYRIYPDANQKKYFSKVFGCVRFLYNKMLSDKKDYYEKNKQSLITYPSKYKEEFLFLKEVDSLALCNAQLDLNSAYSNFFREIKKGNRTQGFPKYKSKKNRQTFRTNNQKNSIRIENDYIKLPKIGFVKLALHRKIKSNELIKNVVVEKDTDDKYYISVAVECLDVKNNDKTKCNKKEIVGIDMSMRHFLVSSGGEKINHPKCLLKNECKLKKCQIKLSKKQKGSRNRAKSRLRVAKLHRKISNQRKDFLHKLSYYFVVNYKNIVIESLSIKSMQKGMFGKSVNDLGWHEFVRQLSYKSEWSKSYLHKVDRYFPSSKLCNNCGIKNTTLKLSDIRWSCRSCNTLHDRDINAALNLKAYYYKEIKTKAGTA
>NC_011247|125616:142672|141538_142672_+|WP_012539458.1|transposase|DBSCAN-SWA
MSVNKAYKYRIYPNANQKKYFSKVFACVRFLYNKMLSDKKDYYEKNKKSLSVNPSNYKNEFPFLKEVDSLALCNAQLDLNSAYSNFFREIKKVNRTQGFPKYKSKKNRQTFRTNNQKNSIRIENDYIKLPKIGFVKLALHRKIKSNEVIKNVVVEKDTDDKYYISVAVECLDVKNNDKTKCNKKEIVSIDMSMRHFLVSSGGEKINHPKCLLKNERKLKKCQRKLSKKQKGSRNRAKSRLRVAKLHRKISNQRKDFLHKLSYYFVANYKNIVIESLSIKSMQKGMFGKSVNDLGWHEFVRQLSYKSEWCGAYLHKVDRYFPSSKLCNNCGIKNTTLKLSDIRWSCRSCNTLHDRDINAALNLKACYYKEIKTKAGTA
>NC_011247|125616:142672|125616_126969_-|WP_012539443.1|terminase|DBSCAN-SWA
MQLNNLPVFIKLQKKFKQKFNIDISSFLQNKDNKIDFKLFENKYLTLKQKEVLRDIDNNFCSKIIFNGGISSGKTFLASYLLIKLLIINRDHYHKDTNNFIVGSSIGTLLANTLKQIEKICSLLNIEYLLKDSRQVTCTIAGLTLNIYGGKNIDSFTKIRGSNSALVYVNEATLMHKETLLEIMKRLRQKPGIIIFDTNPDHPAHYFKVDYIDNRDVYRTYNFNIYDNPLNSKDFIKTQEAIYKNLSAYKARVLLGEWTASIDSCFNEVILNCEYTFKSPIMYIDPAFSVGMDNTAICVFEKMGDKYYAYIYQDKKPISDESILHAISVFAEDFNINTLYIEDRDNTDGYGFLTKIMTSLRRNMNHYFKISAVKPLSNKFVRICTLIPLFNARSIEFLKITDKNVINDIYSYNGLSRCRDDALDALSACYLLLSLKYHDKIKHFSMSRYI
>NC_011247|125616:142672|126971_127523_-|WP_012539444.1|DBSCAN-SWA
MVFKNKELKYSILFKSNLSISDIAKVLGVRESTVLKAKINILGEVASDLNNFDTNACLNFDLDALARDATCQAYMLEKERDSFYKSFYKVANSYINSHFKYKQIIINSDLKRLINLDEEILKLTKDINNNDKDLCKKVKLDLRYKIYKKNRLSKKIILNEMKEDYGCLLKLKKIFNSKGLKLE
>NC_011247|125616:142672|140222_141326_+|WP_012539457.1|DBSCAN-SWA
MEKDFYNSVLFLLLLTDMSCGLSTSTSSSKFPDEKLPLKKFTSENVDVAKPGFESQDLESKFDLKERRVEAGGSQGGIREEKPEEIESIKNFYSALMYNDKVVFHSVQKMASGFEGYSDSEEYKDDQPRFYRVWGNLGINKLSHIMSEYSRLNKKRSDIQWMMMNFDIRKIKEHFNNKLNDCDRNYALEFRGAFQKDDFNTIYDGIVSVMKAYEENLDVFESDYERLRIFRRIHSGFSVKLRSSFDYISNELTDFNVEDESQSKMYFYYDFCVLFGDETGNNRYLQFVEKCEPIFELMSSLREEIKFEIEDDAVASQFTEVFNGLEDRFKLYLKEVFPRIVSDDMSFEGLDSYETDFENLKARVMDY
>NC_011247|125616:142672|128908_129664_-|WP_012539325.1|DBSCAN-SWA
MDRKETKVITVASIKGGVGKSTTSLIFATLLSQSFKVLIIDIDTQASTTSYYFKIIKERGVDLFNRNIYEVLISNLHIDNAVVNVNSNLDLIPSYLTLHKFNSESIPYKEFRLKEQLKLLEFEYDYIILDTNPSLDFTLTNALVCSSYIIVPITAEKWAVESLDLFNFFIDKLSIKAPIYLINTKFKRNNTHKELLNILKENDNFLGTISEREDLNRKIARNDVFDLNKDYIREYQNTLSVLMDKIKNFVV
>NC_011247|125616:142672|133949_134333_-|WP_012539451.1|holin|DBSCAN-SWA
MLNKTNTELGLIVLKNLIEFFVYSDTQDDELFQTGIKKVIDIYKYMNNIYTRSLQKMEMKESKQIVLELETILSKIAKLIDAINTNADTTLIEDLRFERNNLIEIKTKLLQEELDKINSKNKKGGQK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012539443.1|125616_126969_-|terminase	PBSX family phage terminase large subunit	A0A1X9IGF9	Lactococcus_phage	3.3e-20	31.5
WP_012539444.1|126971_127523_-	hypothetical protein	NA	NA	NA	NA
WP_025401297.1|128306_128852_-	chromosome replication/partitioning protein	NA	NA	NA	NA
WP_012539325.1|128908_129664_-	ParA family protein	E2ELL2	Clostridium_phage	1.7e-10	31.0
WP_012539446.1|129639_130203_-	DUF226 domain-containing protein	NA	NA	NA	NA
WP_012539447.1|130230_131340_-	peptide transporter	NA	NA	NA	NA
WP_012539448.1|131792_132926_-|transposase	transposase	Q332I1	Clostridium_botulinum_C_phage	1.7e-75	46.0
WP_081434523.1|132965_133379_+|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	3.2e-27	45.8
WP_012539450.1|133587_133953_-	hypothetical protein	NA	NA	NA	NA
WP_012539451.1|133949_134333_-|holin	holin, BlyB family	NA	NA	NA	NA
WP_041177821.1|134369_134555_-|holin	BlyA family holin	NA	NA	NA	NA
WP_012539452.1|134672_135785_-	DUF685 domain-containing protein	NA	NA	NA	NA
WP_012539453.1|135822_136404_-	DUF735 family protein	NA	NA	NA	NA
WP_012539454.1|136407_137268_-	DUF276 domain-containing protein	NA	NA	NA	NA
WP_012539455.1|137264_137594_-	DUF2634 domain-containing protein	NA	NA	NA	NA
WP_012539456.1|138935_139724_+	hypothetical protein	NA	NA	NA	NA
WP_012539457.1|140222_141326_+	hypothetical protein	NA	NA	NA	NA
WP_012539458.1|141538_142672_+|transposase	transposase	Q332I1	Clostridium_botulinum_C_phage	5.4e-69	46.9

8. NC_011248