Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_010579 Xylella fastidiosa M23 plasmid pXFAS01, complete sequence 0 crisprs c2c9_V-U4 0 0 0 0
NC_010577 Xylella fastidiosa M23, complete sequence 1 crisprs Cas9_archaeal,c2c8_V-U2,WYL,csa3,DEDDh,cas3,DinG 0 1 7 0

Results visualization

1. NC_010577
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010577_1 1867433-1867507 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_010577_1 1.1|1867456|29|NC_010577|CRISPRCasFinder 1867456-1867484 29 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 1189005-1189033 7 0.759
NC_010577_1 1.1|1867456|29|NC_010577|CRISPRCasFinder 1867456-1867484 29 NZ_CP011248 Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence 503612-503640 7 0.759
NC_010577_1 1.1|1867456|29|NC_010577|CRISPRCasFinder 1867456-1867484 29 NZ_CP032919 Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence 774323-774351 7 0.759
NC_010577_1 1.1|1867456|29|NC_010577|CRISPRCasFinder 1867456-1867484 29 NZ_CP033029 Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence 774405-774433 7 0.759
NC_010577_1 1.1|1867456|29|NC_010577|CRISPRCasFinder 1867456-1867484 29 NZ_AP022319 Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence 80930-80958 8 0.724

1. spacer 1.1|1867456|29|NC_010577|CRISPRCasFinder matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

cccgccgttgctcgttccaggtctggaca	CRISPR spacer
ggcgtagtcgctcgttccaggtctggaag	Protospacer
  **. **.****************** .

2. spacer 1.1|1867456|29|NC_010577|CRISPRCasFinder matches to NZ_CP011248 (Agrobacterium tumefaciens strain Ach5 plasmid pAt, complete sequence) position: , mismatch: 7, identity: 0.759

cccgccgttgctcgttccaggtctggaca	CRISPR spacer
ccagccgttgctcgttccagggaaagatg	Protospacer
** ******************   .**..

3. spacer 1.1|1867456|29|NC_010577|CRISPRCasFinder matches to NZ_CP032919 (Agrobacterium tumefaciens strain 15955 plasmid pAt15955, complete sequence) position: , mismatch: 7, identity: 0.759

cccgccgttgctcgttccaggtctggaca	CRISPR spacer
ccagccgttgctcgttccagggaaagatg	Protospacer
** ******************   .**..

4. spacer 1.1|1867456|29|NC_010577|CRISPRCasFinder matches to NZ_CP033029 (Agrobacterium tumefaciens strain A6 plasmid pAtA6, complete sequence) position: , mismatch: 7, identity: 0.759

cccgccgttgctcgttccaggtctggaca	CRISPR spacer
ccagccgttgctcgttccagggaaagatg	Protospacer
** ******************   .**..

5. spacer 1.1|1867456|29|NC_010577|CRISPRCasFinder matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.724

cccgccgttgctcgttccaggtctggaca	CRISPR spacer
cggaacgtggctcgttccaggtctggcgc	Protospacer
*  . *** *****************   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 420196 : 468878 54 Xylella_phage(23.81%) tail,capsid,plate,protease,portal,integrase attL 450772:450786|attR 476141:476155
DBSCAN-SWA_2 1129799 : 1188719 72 Stenotrophomonas_phage(19.44%) tail,plate,protease,head,tRNA,transposase,coat NA
DBSCAN-SWA_3 1193159 : 1227447 42 Xylella_phage(30.43%) holin,integrase,terminase attL 1210729:1210746|attR 1228842:1228859
DBSCAN-SWA_4 1285582 : 1341082 71 Xylella_phage(43.18%) tail,capsid,plate,portal,integrase,holin,terminase attL 1331047:1331062|attR 1342929:1342944
DBSCAN-SWA_5 1383350 : 1406851 28 Xylella_phage(28.57%) tail,plate,integrase attL 1383822:1383836|attR 1403778:1403792
DBSCAN-SWA_6 1579945 : 1585776 10 Xylella_phage(33.33%) NA NA
DBSCAN-SWA_7 2025537 : 2034739 12 Xylella_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage