CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010633	Nostoc punctiforme PCC 73102 plasmid pNPUN04, complete sequence	0 crisprs	NA	0	0	0	0
NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	2 crisprs	NA	6	8	1	0
NC_010630	Nostoc punctiforme PCC 73102 plasmid pNPUN03, complete sequence	2 crisprs	NA	0	2	1	0
NC_010629	Nostoc punctiforme PCC 73102 plasmid pNPUN05, complete sequence	0 crisprs	PD-DExK	0	0	0	0
NC_010628	Nostoc punctiforme PCC 73102, complete sequence	33 crisprs	RT,csa3,DEDDh,cas14j,cas2,cas1,cas4,cas6,2OG_CAS,cas3,csc1gr5,csc2gr7,cas10d,WYL,Cas9_archaeal,PD-DExK,DinG,c2c5_V-U5	1	20	537	1
NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	2 crisprs	cas3,csa3	0	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010630_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010630_1

61534-61662

Orphan

A:N

Consensus_repeat	Method
CATTGCCAGAGCTAGAAAAGGAAGAAGAATTTATATTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010630_1

>merge|NC_010630|1|61534-61662|CRISPRCasFinder
CATTGCCAGAGCTAGAAAAGGAAGAAGAATTTATATTATAAATATAAATACCTTCAGAGGATTGAAGAGTAATTGCACCACCATTTCCGGCATTGCCAGAGCTAGAAAAGGAAGAAGAATTTATATTAT

>NC_010630|1|1|61534-61662|CRISPRCasFinder
CATTGCCAGAGCTAGAAAAGGAAGAAGAATTTATATTAT	AAATATAAATACCTTCAGAGGATTGAAGAGTAATTGCACCACCATTTCCGG
CATTGCCAGAGCTAGAAAAGGAAGAAGAATTTATATTAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010630.1\|WP_012412889.1\|63297_63546_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_012412896.1\|73672_74641_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271195
NC_010630.1\|WP_041566757.1\|70824_71100_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_010630.1\|WP_012412886.1\|52260_54618_+\|glycoside-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|119351
NC_010630.1\|WP_041566755.1\|50700_51543_+\|DUF928-domain-containing-protein	unknown	unknown	gnl\|CDD\|368720
NC_010630.1\|WP_012412892.1\|65213_67598_-\|CHASE2-domain-containing-protein	unknown	unknown	gnl\|CDD\|226703
NC_010630.1\|WP_052304755.1\|67705_68911_-\|DUF1822-family-protein	unknown	unknown	gnl\|CDD\|370155
NC_010630.1\|WP_012412881.1\|45660_46266_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_012412894.1\|68936_70127_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_010630.1\|WP_012412882.1\|46320_46884_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_012412895.1\|72520_72889_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_041566750.1\|46886_47345_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_041566754.1\|50241_50469_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_012412887.1\|54816_57441_-\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|227328
NC_010630.1\|WP_012412890.1\|63731_64559_+\|50S-ribosome-binding-GTPase	unknown	unknown	gnl\|CDD\|226124
NC_010630.1\|WP_012412883.1\|49093_50089_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_012412880.1\|45110_45536_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_041566756.1\|64612_64813_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_041566751.1\|47331_47796_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_041566758.1\|71890_72130_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010630.1\|WP_012412896.1\|73672_74641_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271195	cd01195, INT_C_like_5, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	3.49382e-53
NC_010630.1\|WP_052304755.1\|67705_68911_-\|DUF1822-family-protein	gnl\|CDD\|370155	pfam08852, DUF1822, Protein of unknown function (DUF1822). This family of proteins are functionally uncharacterized.	2.68789e-107
NC_010630.1\|WP_012412894.1\|68936_70127_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.51261e-10
NC_010630.1\|WP_012412886.1\|52260_54618_+\|glycoside-hydrolase-family-protein	gnl\|CDD\|119351	cd02872, GH18_chitolectin_chitotriosidase, This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the large form being converted to the small form by either RNA or post-translational processing. Although the small form, containing the chitinase domain alone, is sufficient for the chitinolytic activity, the additional C-terminal chitin-binding domain of the large form plays a role in processing colloidal chitin. The chitotriosidase gene is nonessential in humans, as about 35% of the population are heterozygous and 6% homozygous for an inactivated form of the gene. HCGP39 is a 39-kDa human cartilage glycoprotein thought to play a role in connective tissue remodeling and defense against pathogens.	3.70244e-125
NC_010630.1\|WP_012412890.1\|63731_64559_+\|50S-ribosome-binding-GTPase	gnl\|CDD\|226124	COG3596, COG3596, Predicted GTPase [General function prediction only].	2.03662e-25
NC_010630.1\|WP_012412892.1\|65213_67598_-\|CHASE2-domain-containing-protein	gnl\|CDD\|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	1.92592e-87
NC_010630.1\|WP_041566757.1\|70824_71100_+\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.12879e-16
NC_010630.1\|WP_041566755.1\|50700_51543_+\|DUF928-domain-containing-protein	gnl\|CDD\|368720	pfam06051, DUF928, Domain of Unknown Function (DUF928). Family of uncharacterized bacterial protein.	5.21332e-79
NC_010630.1\|WP_012412887.1\|54816_57441_-\|CHAT-domain-containing-protein	gnl\|CDD\|227328	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown].	1.64919e-136

>NC_010630.1|WP_012412887.1|54816_57441_-|CHAT-domain-containing-protein
MQKLQLAKRVVKFAVNPVILFTLAIFLIIIPSTFAKPIQTNLPDEFHIQTNKPPATTSQQLLEQGEALYQAGRFTEAVTVLQQAVRISQAESNNLAQAAALTNLSLVYQQIGSWKKADATIDTSLNLLGWDEKNQTLNVNNPKSQLWEILAQTLNIQGELQLAQGQTDASVKTSQQAEQIWKKLGDNAGVTRSRIDQAQALRVSGFYRRSRDILQEVSEQLKAQPDSLLKVTALRSLGNVLQQLGEIESSQKILQQTLEIAQHLQLPLEISLTEFSLGNTARSLSNIKDAIIHYENAAKIAPNPLPKVQAQINQLSLLVEKEQITAAKTLIPIIQSQLASLPTNQAGIYARINFAQTLTKIAYKKDIAEILASSVQQAKIIGDERAESYALGSLGEVYEQNHQWQDAQDLTQQALFLAQKIDASDIAYRWEWQLGRLLKAQGNIPEAISAYDAAVARLQLLRSDLVAVDREVQFNFRDRIEPIYRQSVELLLQEKGQGKPDLDKARQRIEALQLAELDNFFREACLNNQFVALDNVVNRDNPDTAIFYPIILDKHLEIIVKLPNQPLIHKTFVVNRQEIEQVIIKMRETIVEPDANRQFQVLSQQLYEWLIKPVETDLKKRKVNTLVFIPDGLLRNIPMSALYDGKEYLVQKYSVAVTPGLQLFTPKPLAQHKLNALAGGLSQPPKNENFAPLPNVKVELQLIQRLGVSKITLLDGNFNSATLEETINAQPFRVVHLATHGQFSSKAKDTFILAADRRINVSELDSLLKSRGQKRAEPIELLVLSACETATGDNRAALGLAGVALRAGARSTLASLWQIGDNSTALFIDEFYRQLMTGKTTAEALRLAQLKLLSGSEYTRPRYWAPYVLVGNWL
>NC_010630.1|WP_012412886.1|52260_54618_+|glycoside-hydrolase-family-protein
MSNRFSRRKFVKFAGGVIAGSAAVGSAPLVNLLAANAQSSTGYKVVGYFENWSQYRQGGGKFLPAQIDPSLYTHINFAFGIFGYITKGIAPNNPRLTGDYRIQPIEWNDQTVLYPEIQKLKLKNPNLKTLLSIGGWGFNDPQDPIQIGTYTYNLFSQMAASAAGRQQFIYSALEYAQKYKFDGIDLDWEYPGYQGRGGRPEDFANFLALVREFRTAISGRNFLLTIASSAIVPSGVPDQYRSNPGSYFQWLAQCAQYLDWLNVMSYDYHGAFPDDKVTGMNAPLPQDSTPKGPFSVKNTIEAYLAAGIPNSKIVMGIPTYGRTFKVSSPLSLTDNGPGKSYSSVGPAGISTVTPGVLSYYEIQNRISSGSLTRRWHEPTLTPYAYNSQTSEWVSYDDTESIGYKTSYLIEKKLGGAMIWAIGLDQFQSGFPLIKRVKSILDNPALRPKLPSYFVSGGRRYNQYSFLCTHNSFANSDENWTAANQFNTITKQLNDGVRALMLDIYNAEFDSLLGGKGVYLLHNFNPNASFPGINYALPLKHLYDALNEVVAFLKNNRNEVVTIFLEDYVYPDTNKLKEELDKVTGLKELIYDPDNNPNWSVRVTGEWPLLSEMIEWNKRLIIFSDKNHNNLTTKIGVAYDRNYILQNFWSLGVGGTDWDCQSRWRDGYHYQIVPEGTPYSQWRYADPQLHPKVVEKKSALFLFNHFRDTPTRITAALDNTYDKIMDRIENRCCNSAFLPKEKTTKQLPNFVAVDFWQEPVLYNNKAANVVQELNRRWENKLGCANR
>NC_010630.1|WP_041566755.1|50700_51543_+|DUF928-domain-containing-protein
MKWLLAIAVTLSSTTQYPVQVIAQTKQPPTTKQPVQPVKTPASPQQRTSQPVFVWPKTPALSPISGRRVGMGSRDNCPAVATALTALVPLQEAQNVGKQRDASVIGIVEGLTISERPTFWFYVPYTRDLADSSAEFILQDSAETNIYEKAIALPSQPGVIGISLPDNVASLEVGKTYRWYLKVRCNQRTASVPIYVEGDIQRINLDSRVMQQLQTTTDPQEKIVIYAKEGIWFDALTMLAKLRLANSNDASVKKHWQTLLQSVSLDNIATDPLVNSSNGQ
>NC_010630.1|WP_041566754.1|50241_50469_+|hypothetical-protein
MNAKIPSKNYRWIVSGIYENNVSYYLDVRNHWILDKEQAHQFTDKRQALEAFETVERPFDDFYPNVLQIEEGEAF
>NC_010630.1|WP_012412883.1|49093_50089_+|hypothetical-protein
MMTGFIQFRQNNFFALESLAQNLKFTLQEVARLEKDNKYLFVQAEATMVYSLVKNAASSINHLVRINLDCEKKAIAVIKTVANYLHTAYIRVCKYTGYIAHKLEQLLHEAFNLLPSGMTLQPELFAPNEINTVRENKTPLLGVIANWFKDNAQRWAFQQQQKLDKQYFDYTNNGKQKPPVAVQLCLDLESVTPAPPVDSPEVIAQKLAAYGYVKLEVESETRPDSSWSRGDRLKSSGCSGTIADVKGNKAKIDWDNGYSEVYTFEQIHLYGYQKVEAPKNHTFTIDNIKNLTLRAARKLASELGLPQKMNGQDLRKEVLIASLLHWRQQQA
>NC_010630.1|WP_041566751.1|47331_47796_+|hypothetical-protein
MILNRGDIIPGKQEREEIKSRYLQIKPISYKNLRPILIASLGGFVVALMPKLSKQSNPVADEKTYLDRVFDLEFDLSEISQQSKHQQQLSEVANKVLEYFQNVKNKVPKTLRDLKKADRLTSYSEQELIAGLKELIQFEKLNTGENNTYFLPNW
>NC_010630.1|WP_041566750.1|46886_47345_+|hypothetical-protein
MKDVKPAELNQRSYSLPLRLDLAVKLSVVGAVVCAIAAHIGDGIAKKEICFYPKSARIHDAPIQAGEGNPEKLLLGKKYCRYEQRSQIPEPYLKANQYRTSNPNFNPWAFLQHESLYVFRELPADNPFKIHLGIAAIAFGGMGLWGAGVDFK
>NC_010630.1|WP_012412882.1|46320_46884_+|hypothetical-protein
MLTKNQKTPIYFDAEIVDDSPTSVTGDEYDSEQVQQAIAEIDSSITIFRGIAQGAVLAGFQLTSTQSLYLAGSVGLFPAVIAGLPVGASFAATLCYLRFENGLIPKITNRQKLAIGVTRTAMLAASSWKLTGDAQQMDFIARGSFQVFTQQVREFEGIPQPSQNHFGFLLGFSVCAALALFLFLRKK
>NC_010630.1|WP_012412881.1|45660_46266_+|hypothetical-protein
MSRTVKLKLDAPVTYAALQSLTNISQETIFQALDGNKTAAAEVADFRIKQTQRAQNAKAVFGNLNQGLQATEAVMAEETQFLTAAGTSINKMADGWSKVRVSDARLGYGLQEKVIASDNQLAQEQFRHGRTLNLLGESHRATLRVIEIDATKAQSQVWQQVKDKQQGLSPADRAKETLKDIHRHGSNAMRGVKGFFRRLID
>NC_010630.1|WP_012412880.1|45110_45536_+|hypothetical-protein
MSDNIFFAALNALTLNGCPSELAQSAASIVANDDPSKPDLGRTTEDQQIIQETLPYLQNQTWDSTGAYDSYQTIDDTPHPLAHGQFLANLGGLVPDNLIFALAEGEDYPFQVMQELGISEDVIERAESIQSRLGEMNYWGE
>NC_010630.1|WP_012412889.1|63297_63546_+|hypothetical-protein
MSNINIGDDLFRAIKGIASNIDPSGLVKAADGIATIASGALKLATGEEDALTDITNGAGKVITGTGTLCGFIKSNSDSDDSE
>NC_010630.1|WP_012412890.1|63731_64559_+|50S-ribosome-binding-GTPase
MVKEIEQLEKALPIIQRELKKRPPTIGLIGLSGVGKSSTINRLFKTNLATSDTVACTKEFEHKDIELKLTNSTIQNYPVQLRVIDAPGLGEDINLDPQYLQMYKENLGRCDVIVWVLAARNRAVALDQQYLQELEEFHNKIVFALHQIDLVEPLNWNIEYNIPSPKQKKNIEVILQDKKEKLSAVIKKDVKMIEYSSRTGFGLEQLFAAIINSCPEERTWIFNGLKGFSYKEYTPKIVLDELEKRNNGKVSVGKSWLENWLEILENLLEMLNPFK
>NC_010630.1|WP_041566756.1|64612_64813_+|hypothetical-protein
MSNKHDSEFERALNAAKNASYSDKKAAAKSPNSFLDFLRNLGLRTLANNLSDWIRDNWSTIVDWIL
>NC_010630.1|WP_012412892.1|65213_67598_-|CHASE2-domain-containing-protein
MSKLVVFSFLGGDLNKGFLVVTAQLWHHNQFFPMKLTGSLPAAPELSELYRRWQLLYTAVHQSLGRNQRIKVHSQDITNISINDFDEVCQQLQANINAWLQFESFQNIERQLRTQLNRDDEIRVIIETNIVLLHRLPWHLWHFFEDYPKAELALSNHEYASHHVLLKSSAGKVKILAILGNRVGIDIDKDSSLLEALTDAQTTFLVEPSRKTLDEYLWKQDWDILFFAGHSTSLANGEIGEIGINQTENLTIPQLKNALKNAIRRGLQLVIFNSCDGIGLARNLADLNIPQTIVMREAVPDLIAQEFLKHFLIAFAGSKPFYLAVREARERLQGLENEFPCASWLPVIYQNPTTVPTTWLALLGNFGDTKFMGIATKGKIANPKSQLLTVLISIFIVAVSTVGLRYLGVFEKIELQTFDQMLRLRPKEDPEPRLIIVEITEKDIQSRPEKTLGWKSVSDSTLATLLNKLQKYEPRVIGLDIYRDFADPLNKLNPIELPTELGKDNVVVVCKSRDRKYDPQGVKAPKDVPVERQGFTDGVQDPDGIVRRQILMMAQEPPSTCKTPYSLSLQLAARYLFAENIQPEFQKDYVQFGSKVLKRLKPGRSGGYQQGVELGGMQLLVNYRDTDYQRVSLEDILTNKFDPKLLKDKVVIVGVTANTISDTWSTPYSAAQQPYQETPGVLIQAQMVSQVLSAVLDERLILWVLPFWGDMIWICAWSVGGSLIVWCVRSLFDRGWVIVAMVFVLYGVCAIALFQQGLWLPFIPTAFGVVTSGVVVLFIQSRREFSTATHSLRE
>NC_010630.1|WP_052304755.1|67705_68911_-|DUF1822-family-protein
MTLDFTEPQEILLEISPSLQKSAWQESQVYATPSSRWCAYTNQICLYAFLNWIKTESVSKASVWYSSPGIPAFWEFVNGTAILLEEKRVVLIPSEAIDDSELEVPQEWVDIPSWVADYYLAVQVTPDGEWVRIWGYITHQELKSLAHYDQVDRTYCIDARYLIKDLNAFWITYQFCIKEEMKAAIAPLPELSTAQAENMQQLLSDSSVTFVRLAVPFTTWAALLDNEQWRQCLYEQHQRCLRRAVPTQFSQVQVNLSRWLLQIYDASWQAIETFFEPNTSSLAFNFRSSSGLNAAAIKRAKLIDLGMQIEAQKVILLVALMPEVNQQVSIRVQLHPACNQPYLPANIKLVLLSEQGEILQEVQARVQDMYVQLKLFDGEVGERFSIQVTLDSCQITENFVI
>NC_010630.1|WP_012412894.1|68936_70127_-|sigma-70-family-RNA-polymerase-sigma-factor
MRPRQEITEMFSTFVHLERDRFSKWLIDIKLHRSIQNCLEYSPLVPNSENFWALYWHKHWRKQSNHLARMHLSAYLQEPSYWSAKKTIAKFTNSQYSLADYFQMASAEIETVLKSFNPEKCSSLKAYATMALPSRLKDILRQRKEADICTNWGLLRKVSKKQFLEALDKAGLSPAIIAQYRLAWNCFKELYVQNQPGGIKALPEPERQIWEAIANLYNRERQNQLTQPTPQCTREKIEQWLTQAAIYVRAYLYPPVSSLNLAISEDDSIATLDLPDPSSDSLIAEMIAEEDAQHQQNQQSQIQAILLKTLQTFETKTKEILKLYYQQGLTQPQIVQHLQMSQPTVSRRLFKARESLLTALIQWTQETFNISVNSNQVKDMSTALEEWLRVKYGESS
>NC_010630.1|WP_041566757.1|70824_71100_+|hypothetical-protein
MWDLQGQQLSKFTAHQGSVRSLSLSPNGQQLATAGEDRTMRLWNLQGERLAEFSANSRNVIFGPDGQRLATVGVDGNAKLSYGKLKRLRNC
>NC_010630.1|WP_041566758.1|71890_72130_+|hypothetical-protein
MLNQRVLAGLLAVSTVMTTLAVNASPSSAAIRIDVSPSYTATKFTKKMTLAKRPPNILEWNRKYRKFCATVTKAPICKR
>NC_010630.1|WP_012412895.1|72520_72889_+|hypothetical-protein
MLDTFGAFEQGFILSQKALDYLMEWNTEAEIASSISQTAQQVVEILVNVPGMTMAHSRDFQRSMPHFTLKDKTVVKIYINPAQVKHIFLADCNHKMVFGGYVGWIHTKELNKAIDNIKKNFN
>NC_010630.1|WP_012412896.1|73672_74641_+|tyrosine-type-recombinase/integrase
MSGRILKVNNNTLPSVLDWWTQPDVLAMLLSEKRSESTRKAYDRDIKDFFTKMFAVESTAEWVVRFLALPGAQALLWVVKYKAKMIEQRLSEATVNRRLSALRALVHKGRVLGVCGYTLEDIKGETVIKYRDTSGVTPQEFKQILLTCDPTTAKGVRDYALLRLLWDNALRRGEIAKLKMGDFDRQNSKLLILGKGRGSQRETIDLTPKTRDAICYWLAFRGLASTKDALFVALDLNTPGHPLTDTGIAKMVRTRAKKANISKPLSPHRIRHSSITAALDAGQSVREVQKLSRHTKLETLMIYDDNRQQHQLKVSSVLADLV

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Crispr_ID: NC_010630_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010630_2

78268-78406

Orphan

A:N

Consensus_repeat	Method
CGAACCTTTAAGCAAAGCAGACTCAACAGAACAACAGACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010630_2

>merge|NC_010630|2|78268-78406|CRISPRCasFinder
CGAACCTTTAAGCAAAGCAGACTCAACAGAACAACAGACTGCCAAGGTTACAGACTTACAGACTTCGGAAGCTACAAACTCTGTAACGTTATCCGAATGCGAACCTTTAAGTAAAGCAGACTCAACAGAACAACAGACT

>NC_010630|2|2|78268-78406|CRISPRCasFinder
CGAACCTTTAAGCAAAGCAGACTCAACAGAACAACAGACT	GCCAAGGTTACAGACTTACAGACTTCGGAAGCTACAAACTCTGTAACGTTATCCGAATG
CGAACCTTTAAGTAAAGCAGACTCAACAGAACAACAGACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010630.1\|WP_012412908.1\|109189_109687_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_012412896.1\|73672_74641_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271195
NC_010630.1\|WP_012412907.1\|101411_106817_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|235564
NC_010630.1\|WP_041566772.1\|78763_78973_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_041566758.1\|71890_72130_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_041566757.1\|70824_71100_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_010630.1\|WP_012412901.1\|77292_78087_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NC_010630.1\|WP_012412906.1\|95853_101415_-\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|225858
NC_010630.1\|WP_012412909.1\|110286_110700_-\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_012412894.1\|68936_70127_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_010630.1\|WP_012412895.1\|72520_72889_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_148220521.1\|79345_80011_-\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_012412897.1\|74903_75290_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_012412910.1\|110812_111781_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|372608
NC_010630.1\|WP_012412899.1\|76286_76697_-\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_012412905.1\|82033_95848_-\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NC_010630.1\|WP_012412900.1\|76852_77200_-\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_041566761.1\|107116_107524_+\|hypothetical-protein	unknown	unknown	unknown
NC_010630.1\|WP_167315731.1\|80387_81401_-\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238882
NC_010630.1\|WP_012412898.1\|75425_76280_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010630.1\|WP_012412896.1\|73672_74641_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271195	cd01195, INT_C_like_5, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain contains six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	3.49382e-53
NC_010630.1\|WP_041566757.1\|70824_71100_+\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	4.12879e-16
NC_010630.1\|WP_012412906.1\|95853_101415_-\|type-I-polyketide-synthase	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_010630.1\|WP_012412901.1\|77292_78087_+\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	1.84439e-34
NC_010630.1\|WP_012412905.1\|82033_95848_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NC_010630.1\|WP_012412907.1\|101411_106817_-\|non-ribosomal-peptide-synthetase	gnl\|CDD\|235564	PRK05691, PRK05691, peptide synthase; Validated.	0
NC_010630.1\|WP_012412910.1\|110812_111781_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|372608	pfam13455, MUG113, Meiotically up-regulated gene 113. This is a family of fungal proteins found to be up-regulated in meiosis.	5.15508e-05
NC_010630.1\|WP_012412894.1\|68936_70127_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.51261e-10
NC_010630.1\|WP_167315731.1\|80387_81401_-\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238882	cd01846, fatty_acyltransferase_like, Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.	1.56444e-81

>NC_010630.1|WP_012412901.1|77292_78087_+|ParA-family-protein
MVNHTLCSWHGLCQLYGVLLTYKLCKLVSLLLTNLQSYEQTELRTNRVTKLRSQDVHIIAVVNGKGGSAKTTTSVNLAAILAEKSKVLLVDADPQGSATWWAERNERDFELSKETDTNELLKLKKVKGFDFIIVDTPPALHFEALQITIDAADFVLLPSPPAPMDLQALIETVQASIMPANVKFRVLLTRVDPRSLGKALDAQQALMQGGIPAFNGFVRAYAVHEQAVLDGIPITQVRGKIAREAEGDYRRVADELLREVNTHG
>NC_010630.1|WP_012412900.1|76852_77200_-|hypothetical-protein
MTQSHPSLPQPQLEKAGITFEQYLEFTPEKLELSNGYLGYGGQDQLGFHLAVLTNMGLLSAIRHTGLSLWLEALDRRVREKLATVNADPEVAQALLNRFDRAMADLTAMVEYLEE
>NC_010630.1|WP_012412899.1|76286_76697_-|hypothetical-protein
MNIEQTVLEVSGVEITKTLLVDLQKLQQYTGEPIAAVYADNLLRTMRKLRDKLPFDPYTEVVMALHDALFFENRWIDYNANQYKGVCELLTSLVNQETINNSSVESAILTLENLGFDTLPFGVKIDDDLETDEDEE
>NC_010630.1|WP_012412898.1|75425_76280_-|hypothetical-protein
MDDNSVPQHFLDTSVLRSLLLGTQVYKQYFESQFTDQPLYISNYVQMEMKRSYLINLISFYFVLRLETINNIGDAITLWSNRFKTSELKAILQLIPQLFSTHQLNFSSPQDKEKALAILGIYIKRFELLLRKKFNNTNTDPTACARAQGALNLDLQNAATGLKQFADEFGDVKTCRSKCQIDQFLLVQYPSEIEQLVQIASQLPKNSKTRGFINIASNLKEILAQGAAACDCKRCEKIGDAVIALNAPRNMQLEHTDNSFDYLCPSINQPHYKHPSENQIVTNI
>NC_010630.1|WP_012412897.1|74903_75290_+|hypothetical-protein
MIINRPQWQLSLIESDNRISAELVVFDEQIFSNILAAIQRDWQQVVQDFYTAERRNFNTITPLGDLETIEIVQPLTIKVKDDYIMGRNQVSCLLWAMRDLLEPRESVELRKICNSRKKPDSNIFQLHG
>NC_010630.1|WP_012412896.1|73672_74641_+|tyrosine-type-recombinase/integrase
MSGRILKVNNNTLPSVLDWWTQPDVLAMLLSEKRSESTRKAYDRDIKDFFTKMFAVESTAEWVVRFLALPGAQALLWVVKYKAKMIEQRLSEATVNRRLSALRALVHKGRVLGVCGYTLEDIKGETVIKYRDTSGVTPQEFKQILLTCDPTTAKGVRDYALLRLLWDNALRRGEIAKLKMGDFDRQNSKLLILGKGRGSQRETIDLTPKTRDAICYWLAFRGLASTKDALFVALDLNTPGHPLTDTGIAKMVRTRAKKANISKPLSPHRIRHSSITAALDAGQSVREVQKLSRHTKLETLMIYDDNRQQHQLKVSSVLADLV
>NC_010630.1|WP_012412895.1|72520_72889_+|hypothetical-protein
MLDTFGAFEQGFILSQKALDYLMEWNTEAEIASSISQTAQQVVEILVNVPGMTMAHSRDFQRSMPHFTLKDKTVVKIYINPAQVKHIFLADCNHKMVFGGYVGWIHTKELNKAIDNIKKNFN
>NC_010630.1|WP_041566758.1|71890_72130_+|hypothetical-protein
MLNQRVLAGLLAVSTVMTTLAVNASPSSAAIRIDVSPSYTATKFTKKMTLAKRPPNILEWNRKYRKFCATVTKAPICKR
>NC_010630.1|WP_041566757.1|70824_71100_+|hypothetical-protein
MWDLQGQQLSKFTAHQGSVRSLSLSPNGQQLATAGEDRTMRLWNLQGERLAEFSANSRNVIFGPDGQRLATVGVDGNAKLSYGKLKRLRNC
>NC_010630.1|WP_012412894.1|68936_70127_-|sigma-70-family-RNA-polymerase-sigma-factor
MRPRQEITEMFSTFVHLERDRFSKWLIDIKLHRSIQNCLEYSPLVPNSENFWALYWHKHWRKQSNHLARMHLSAYLQEPSYWSAKKTIAKFTNSQYSLADYFQMASAEIETVLKSFNPEKCSSLKAYATMALPSRLKDILRQRKEADICTNWGLLRKVSKKQFLEALDKAGLSPAIIAQYRLAWNCFKELYVQNQPGGIKALPEPERQIWEAIANLYNRERQNQLTQPTPQCTREKIEQWLTQAAIYVRAYLYPPVSSLNLAISEDDSIATLDLPDPSSDSLIAEMIAEEDAQHQQNQQSQIQAILLKTLQTFETKTKEILKLYYQQGLTQPQIVQHLQMSQPTVSRRLFKARESLLTALIQWTQETFNISVNSNQVKDMSTALEEWLRVKYGESS
>NC_010630.1|WP_041566772.1|78763_78973_+|hypothetical-protein
MERKETRLRQDQIDALTDLTRKLNRTKQVKGGERLTDNTLIRVAVDLLLNKASELQGTTEDELRSSLNL
>NC_010630.1|WP_148220521.1|79345_80011_-|hypothetical-protein
MGILMAIERESVNFKLPKSLVELLRAEAKKRQVSATELVVQGLHHILGQAEVADNRIENVLHQIVSRLSALEANQVNNTSSIESSIENRLQQIETVLGHLTQSIESTSTEQQAQQLSNLEEKLETVAKNVAQLNNALGQLRHQGNTGRRQFSSSHQFHGISVEIQSLTGENLARRLGVDELSLSRERESKSPSEFESWSRHRDPASRGWRFGDDGLYYPIK
>NC_010630.1|WP_167315731.1|80387_81401_-|SGNH/GDSL-hydrolase-family-protein
MFPIKVSAAIFDKIFVFGDDLSDTGNFFNATGQTSPSSPPFYQGRASNGPIWIDYLSQYLGLNPTPYTAVLGGASSSQGINYAYINATTGTANLFANLTSDPLLALGLQQEINAFTTTNPTADPNALYIVWAGAADYIPVTNSFQPYQTPTQTISNLSQAINSLVKVGAQNIFVPNLPDLGKNPYIQDTPLATPLNTLTSEHNADLAKLINIQNQSLDNGVKIQLFDVNSLFNAILSNPAKYGFTNVQDSCLDQLDPSKITLCGTQPNIQNQYLFWYSLEPTTAFHKIVADAAYQQLVPVHEPSTGLGLLALGAVSAIFVTRVKYTSRKAKMSQLSS
>NC_010630.1|WP_012412905.1|82033_95848_-|non-ribosomal-peptide-synthetase
MNKNELIIELFNRKVKLWVEGDQLRIRAHKGVLTQELLDTLTTHKADVIELLRQNTIGGYDSSLPPIKARPEQHYQPFPLTDIQQAYWLGRSSTFELGNVATHAYIEIDSNNLDIKLFKEAWQKLILRHDMLRAVVLPSGEQQILKAVPPYEIEILNLQEFEPEVAVVKCEEIREQMSHQVLPPDKWPLFEIRATRFDQKRYRLHVSFDLLMADLGSLQQLLKELNQLYQNPETQLPPLELSFRDYVLAERQVKETQLYQRAQSYWWNRLDTLPPAPELPLAKSVLKQPTFVRHSAQLDQQKWQQLKQRAQAVGLTPSGVLLAAFAEVLTAWSKSPKFTINLTLFNRLPLHPQVNEIVGDFTSVTLLEVNNSTSETFGNRALRLQQQLWQDLDHRYVSGVEVMRELARRQGGTHRAMMPVVFTSALTHNFLTNTANGLNQLGEIVYGVSQTPQVWLDHQVSEEEERLVFNWDVVADLFPEEMIDDMFETYCQLLVELATKEAVWQQPQRQLVPAYQLEQRAGVNQTPAPNSGELLHTLFAKQAELRKHSPAVISPERVLTYEELWRLANQVGHRLQQLGAKPNSLVAVVISKGWKQVAAVLGVLMSGAAYVPIDPQLPSQRQQQLLEQSQARVIVTDDPLVATSAWVGLIPVMLIDERMQSQEPTLPLAWVQTPEDLAYVIYTSGSTGIPKGVAIDHCSAVNTLLDINSRFCVSPADRVLALSALNFDLSVYDIFGVLAAGGTIVMPGVTEVKEPAHWVELMRQHHVTLWNTVPALGQMLADYLSRERMTPPQGLRLALLSGDWLPLSLPAQLRQLWSQMEIVSLGGATEASIWSICYPIDEVDPSWSSIPYGKPLVNQTFVVFDDRLNARPVWVPGELYIGGIGLARGYWQDEERTATSFITHPVTGERLYKTGDLGRYLPNGNIEFLGRLDHQIKIRGFRIELGEIESVLGQHPSVQQTLVTSVGESANRQLVAYVVPTIEHYPASPSEVHDPIEFKLSQPGWQQIRIAHLREFLQEQLPAYMVPSHFVILEALPLTPNGKVDRKALPAPEMRSDQKLEFEAGRTPIEEMLTFIWANILKVEQIGIHDNFFELGGNSLLATQVIAQVRSTISLEIPLRSLFQHPTVAKLAQIIQLAIQPDEQLTAPPLRPIARDGELPLSFAQARLWFLNQLQPHSAFYNIPVFLRMAGQLDVVALQESINEIIRRHEALRTNFTATDGIPVQVIAATHNLTLEVIDLQSLPEAARELETTRLGTDSAQQPFDLAQEPLVRTKLVQVHQTEHVLLLTMHHIISDGWSMGVFVRELAALYNAYSQGQPSPLPKLSVQYVDFAAWQRKWLQGEVLESQLNYWQKKLAGVSTLLALPTDRPRPAFQSFRGSHQQITIPVELSQALRLLSRQQGVTLFMTLLAAFDTLLYRYTSSDDICVGTPIANRQHQEIEGLIGFFVNTLVMRTDLSGNPSFAELLSRVRSVALEAYTHQDIPFEQLVEALQPERSLSHTPLFQVMFDLQNVPMSALDMTGLSMSSLTVETDTTKFDLTLSILETDLELVGVWEYDTDLFDAATITRMAGHFQLLLEGIVANPQQQLSELPLLSKPERNQLLVEWNDTQADYPYDKCIHQLFEEQVARTPDAVAVVFENQQLTYQQLNNRANQLAHYLQSLGVKPDTLVGICIERSLEMVVGLLGILKAGGAYVPLDPGYPSERLGYALSDAQISVLLTQQHLVEKLPEHQAQVVYLDQNWDAILTADYAYAQFPKDNVHSQVQPTNLAYVLYTSGSTGKPKGVAIEHHSPVALVAWAKEVFTPEQLAGVLACTSICFDLSVFELFVPLSWGRKVILAENALHLPTLPAAEQVTLINTVPSVITELIRINGLPGGVSTVNLAGEPLQNQLVQQIYQQQIVKYIFNLYGPSEDTTYSTFALIEKGTTFAPPIGRPIANTQIYILDEYLQPVPVGVAGELHIAGAGLARGYLNRPQLTIEKFIPNPFSTDPHSRLYKTGDLARYLPDGNIEYLGRIDNQVKIRGFRIELGEIEAVLSQLGDVQASCVIAREDTPGDKRLVAYVVADQHCTTTISELRHSLKAKLPEYMVPNAFVVLESLPLTPNGKVDRHALPTPDLHSERIEKYVSPRTPIEEMLAQIWAQVLKVEQVGIYDNFFELGGHSLLATQLLSRIRNTFKVELPLRSLFAAATVAELAQEIEQLQQQGLELTSSPILPRVDNAELLLSFAQQRLWFLDQLEPNSALYNIPLTLRIVGTLSVKALEQSLEEIIHRHEALRTNFITIEGKPSQIIQTQTNWIVSVVDYQHLSTSEQEIATQQLAQKQLIQPFDLATEALIKATLVVLNKTEHVLLVCMHHIVSDGWSMGVFVQELAVLYNAYSIGQPSSLAPLPIQYADFAIWQRQWLQGDILQSQLSYWQQQLADAPGLLSLPTDRPRPAVQSFAGAYQQFALSKQLTSGLIQLSQEQGVTLFMTLLAAYDTLLYRYTGVADILLGSPIANRDRSEIEGLIGFFVNTLVMRTDLSGNPSFCELLDRVREMAMDAYSHQDLPFEMLVEALQPERDLSHTPLFQVAFVLQNAPMSQLELTGLTVSPLVVEGTTSRFDLTLLMENTGTGLVGLWEYNTDLFDSSTIERMTGHFMTLLEGIIANPEERISQLPLLTQVEQHQLLVEWNDTQVDYPQDQCIHQLFEEQVERTPDAVAVVYENQQFTYRELNAKANQLAHYLQTLGVGPDVVVGLCVERSLETIVGILGILKAGGAYVPLDPEYPTERLQFILEDAQVSVLLTQQQLVNSLPKHQARVICLDSDWEKIAQKSESNSLNTTTSDNLAYVIYTSGSTGKPKGVLVNHSNVVRLFEATNSWYSFNAQDVWTLFHSYAFDFSVWEIWGALLYGGRLVVVPYLVTRSPESFFELLTQEKVTILNQTPSAFRQLIQAEQSTATTGNLNLRLVIFGGEALELKSLQPWFERHGDQLPQLVNMYGITETTVHVTYRPLSKADLNSTASVIGRPIRDLQVYVLDEYKQPVPIGVPGEMYVGGAGVARGYLNRPELTAQRFISSPFDNSKLYKTGDLARYLPNGELEYLGRIDQQVKIRGFRIELGEIEALLAQHPAVWESVVVIREDELDDKRLVAYVVPKVKQSSTAAELRQFLANQLPSYMVPNTFMMLESLPLTSNGKIDRRALPKPELDSTLLEKFVAPRTPIEDMLAQIWAQVLKVEQVGIYDNFFELGGHSLLATQLLSRIRNTFKVELPLRSLFAAATVAELAQEIEQLQQQGLELTSSPILPRVDNAELLLSFAQQRLWFLDQLEPNSALYNIPLTLRIVGTLSVKALEQSLEEIIHRHEALRTNFITIEGKPSQIIQTQTNWIVSVVDYQHLSTSEQEIATQQLAQKQLIQPFDLTSEALVRATLIILSETKHILLVCMHHIVSDGWSTGVFLQELAVLYNAYSQGQPSPLASLPIQYADFAIWQRNWLQGDVLQTQLNYWQQQLKDAPALLVLPTDRPRPAVQTFAGTHQKFALSEKLTQGLIQLSKEQGVTLFMTLLATYDTLLYRYTGQADILVGSPIANRDRNEIEGLIGFFVNTLVMRTNLAGNPSFSELLTRVRFMAMEAYTHQNLPFEMLVETLQPQRDLSYTPLFQVMFALQNAPMSEVELTGLSVSPLVVESTTAKFDLTLSMQNTADGLVGVWEYSTDLFDANTIERMTGHFVTLLEGIVANPEERISQLPMLTKIERQQLLVEWNDTQADYPYDKCIHQLFEEQVARTPDAVAVVFENQQLTYQQLNNRANQLAHYLQSLGVKPDTLVGICIERSLEMVVGLLGILKAGGAYVPLDPGYPSERLGYALSDAQISVLLTQQHLVEKLPEHQAQVVYLDQNWDAILTADYAYAQFPKDNVHSQVQPTNLAYVLYTSGSTGKPKGVAIEHHSPVALVAWAKEVFTPEQLAGVLACTSICFDLSVFELFVPLSWGRKVILAENALHLPTLPAAEQVTLINTVPSVITELIRINGLPGGVSTVNLAGEPLQNQLVQQIYQQQIVKYIFNLYGPSEDTTYSTFALIEKGTTFAPPIGRPIANTQIYILDEYLQPVPVGVAGELHIAGAGLARGYLNRPQLTIEKFIPNPFSTDPHSRLYKTGDLARYLPDGNIEYLGRIDNQVKIRGFRIELGEIEAVLSQLGDVQASCVIAREDILRDKRLVAYVVSNTEPAPTDKLLRQFLKQQIPEYMMPSHFVILETLPLMPNGKVDRFALPAPHNVQLQNTFVPPRDSVELQLTQIWENILNTNPISVLDNFFDLGNSLLAVSLMAQIHKRFGQSLPLSTLFQNATIEQLSTIIRQQVNSSSWSHLVAIQPNGSKKPFFCVHPAGGNVVSYLNLARYLGEEQPFYGLQAQGLDGQHTPMTSIEEMATSYIKAMHIVQKEGPYLLGGWSLGGTIAFEMAVQLQKQGHQVALLALFDSQAPNFESQNDFDHTVLLNNFAHVIGVYFGKKLVECDDEFKELTFNQQLHYILERAKMAGLMPTDAGIEYLRPLAEVFKANLQAAQNYVPQIYPNQVILFKASAALSSDCPNSALGWEKLTVKPVKIYTVPGEHLTMMSNPYIQDLADKLRDCLNEAQTF
>NC_010630.1|WP_012412906.1|95853_101415_-|type-I-polyketide-synthase
MSEYDRSGDIAIIGMSGRFPGAKNLEEFWQNLKNGVESISFLNDDRILGSGVSPSVLGHPNYVKASSVLKDIDLFDAPFFGFSPREAEITDPQHRIFMECAWEALENAGYNPKKSNCSTGVFAGKSISNYLLFNLLHTLDLTKATNYLQNLIGNDKDYLATHTSYKLNLKGLSVTIQTACSTSLVSVIMGCDSLLSYQCDLALAGGITVRVPQEIGYIYEEGSILSPDGHCRSFDAKAGGTIYGSGVGIVVLKRLADAITDRDCIHAIIKGTAINNDGALKVGYTAPSVDGQSEVIAMAHAMAGIDAETISYIEAHGTGTNLGDPIEIAALTQVFRTTTQKKGFCAIGSVKTNIGHLDAAAGVAGLIKTVLALKYKLLPPSLHFEEPNPQIDFANSPFYVNTKLSEWKTDGKPRCAGVSSFGMGGTNAHVILEEAPALIPVANQVERSLHILSLSAKSQKALQELASRYENFLASHPEASHPDICFTAHTGRTHFDCRLAVVSESIAQMREQLGTFVAGVEAAGLVSGQVNEAESPKIAFLFTGQGSQYIGMGRQLYEEAPIFRQTLDRCNDILRPYLEKSLLSILYPESEETSLIDETAYTQPALFALEYSLYELWKSWGIKPDIVIGHSIGEYVAATVAEIFSLEDALKLISERGRLMQALTQNGKMVAVFASESKVREAIQAVAVSSEVAIAAINSPQNTVISGGNKAVEAVCAVLEAEGIKTKKLKVSHAFHSPMMEPILADFEKVAASIAYSAPKIELSSNVTGKLIGSEIATPEYWCRHIKQPVRFAEGMKTLHDRGCEVFVEIGPNPTLLDMGHQCLDEVGVFIPSLRQRYSDWQQLLQSLAALYVRGVQVDWFGFDQNYLRSRLELPTYPFQRQRYWIDKPGILIDTKSHLALNGIRNQVIHPLLGQRLQSAALKNNEIQFESKISENFPAFLEHHRIYQQTIFPASGYLEMALFAGAEVFKSDKLILEEFVIHQVLILPPNQEKTLQLILTPTGNLEYSFQIFSFNQVAEQSADLWILHASAKLLLSEKGLEIPHVNLEQLTQRSEEISPEDYYQKCCDQGIDYGASFQGIERLWRQNGEVLGQIRLPEALHLEAVNYKLHPSLLDACFQVLKAGIHDTNTEDTYVLVGLERLAVFGYPDSTLWSYAQMRPVKETNQQTLTADLQLVSPDGRVIITVEGLVLKQVSSEALVGTAPQLLLNSLYEVEWRSQARLFPLSPAENLLTPSAISERILPQVNEAIGDQYKNWLILADSLGIGQQLATFLRARGQTCTLIFSGENYEQLAEQEFRIDLASFADFQQLLKETVGTGIRGVVHLWSLEAPEAQDLTVTDLEAASHKACGSTLYLVQALVKAELKQPPTLWLVTRGAILVGVESAVSGVAQSPLWGMGKVIALEYPEFNCVRVDLDPNAPDDNAQTLFEEIWSKSSEDQVAFCKGNRLVPRLVSRQFQAPVVHNKLNCRGDSTYLITGGLGYLGLLVARWLVECGAKYLVILGRNSASFAANSQLRELEQMGTQVVVRMADVSQEGQIAQVLAEIKQSLPPLRGVIHAAGVIDDSTLLQLSWERFSQVMASKVEGAWNLHTLTQDTPLEFFVLFSSLSSLLGNSGQANYAAANAFLDALAHYRRNRGLAGLSINWGVWSLKESTPEPDRREGERLLGRKGMEFINSKEGLQVLDYLLLQSSVQVGVLPVKWSKFLQQFPPGGEPPFFSEFVYQLQQQVKDGQSQVKQIELIRRLKEASANERLELLVAYLQDGVAKVLGISSSQQIDPNQSLNELGFDSLMSIDFKNKIKNELGIELPIRKIAESSSVVQLALALIEQLALTSLIQSEQPSNELTDNLEEIIL
>NC_010630.1|WP_012412907.1|101411_106817_-|non-ribosomal-peptide-synthetase
MVSFYISELGLEVANFIEIIRFRSLSQAGKTAFLFLQDGETEAAKITYRELDQKAQAIAAQLQTLTTPGDRVLLLYPSGFEFIAAFVGCLYAGVVAVPAYPPRRNQKMLRLQAIAIDAQATLVVSTTSVLGNINSQAENPGFLGLKCVATDNLIPIEDFIPYRATPDTLAFLQYTSGSTGTPKGVMLNHGNLLHNQRLIQTAFEHTEQTIFVGWLPLFHDMGLIGNTLQPLYLGIPCIFMSPTAFLMRPLQWLMAISKYKATTSGGPNFAYDLCASKITSEERSTLDLSTWQVAFNGAEPIRAETIERFASTFADCGFRREAFYPCYGMAETTLIVSGGLVAPPPVLQTFQKAALEQHLVVPASNSDDATQTLVGCGQPLQDMRVVIVHPERMTRCNSDEIGEIWVSSASVTQGYWNQIDSTQRTFQAYLQDTGAGPFLRTGDLGFLKDGELFVTGRLKDLIIIRGRNYYPQDIESTVQKSHLSLRANCGAAFSVEIDGEERLVVIQEVERAYYRNLEVEEVVGAIRSAVSEEHELQVYAVVLLKPGGILKTSSGKVQHYACKAGFLANTLDAIGSSILEKFDSFEGIELINVEELLATPAEDRTRQLESYLQKLIARMLKIYPSKLNIREPLTVLGIDSLLATQIAYRIREQLKVDLPIQSFFDSATIGDLTEHIETILQEQKNKDSALSLSQIISAPDQRYQPFPLTDIQQAYWVGRSNSFELSNVATHVYIEIESINLNIKRLTNAWQKIIERHDMLRTVVLSGGEQQILEVVPFYEIEVLDLQKLEPKFAIPKSEEIRQQMSHQILQTDQWPLFEIRATRFDEQRFRLHISIDLLLADYGSLLRLCQEWSQIYQHPDTTLKPLEISFRDYVITEKQLVHTELYKRAQEYWFKRLDTLPQSPQLPLAQNPYLLKQPQFKRRCSQLKSETWQQLKQRASQAGLTPSGILLTAFAEVLAIWSNSTEFTLNLTLYNRLPLHPQVNEIIGNTISLILLEVNNSTPASFTVRAQNLQRQLWQDLDHSYMSGVHVLRELARRQGSHQKALMPIVFTSILNNGSFIQDRSALNVFGEVIYSISQTSQVWLDHQVMEEDGKLVFNWDAVEDLFPEGLLDDMFEAYCEFLMLLATSDAVWREITYELVPKAQLLQRATVNSTDAPISGWMLHTLFAAQVEAREQDCAVISSQRTLTYLELFQLANQVGHRLRKLKTSPNTLVAVVMEKGWEQIVAVLGILMSGAAYMPIDPELPDERVQYLLKQGEVKLILTQSWLNERLTWIEGIPRICLDCDELVGEDSSPLDLVQSPDDLAYVIYTSGSTGVPKGVMLTHRGPVNTILDINQRFGITHQDRVLALSALNFDLSVYDIFGTLAAGGTLVIPEAERTKDPAHWVELMKQHKVTLWNSVPTFMQMLVEYLSAGLEKVPASLGLILMSGDRIPVNLPQQIKAIWEDVKVVSVGGPTETSIWNICYPIEKIDEQWKSIPYGKPITNQRYHVLNKFLEPCPVWVPGMLYAEGIGLAKGYWRDEKKTEESFIIHPRTQQRLYKTGDSGRFLPDGNIEILGREDFQVKINGYRIELGEIEATLLQDESVKEVVVTSTEKEHQSLVAYVVLNSNQKQSSQQHHQLKGVLLNSLEPVQESNSISKKLLNYLEQKLPSYMVPSDCVILNALPLNRNGKVDRKLLPKLNKNVLKPETGAVPPKTEIEQTLAKIVREVLQIEKIGVYDNFFDLGANSIHLVQINKNIKILMGIEVQMVEIFQNPSISYLAKFFSQHKGENKSFQAVAERAEKRKIAQQKRGMKRGKS
>NC_010630.1|WP_041566761.1|107116_107524_+|hypothetical-protein
MWQNPSFLVKTFSVSLRISDTEKVKLLSYKAFSVSLSVAIKMAKVELVDMFFYTADMTCFDIDEFLAVVLLPRLTFLYVEDYCIHSTLLDRTRGIFFEHNRVLQTMLPLVLNFFLPSFCTIISLQGQDYRISALL
>NC_010630.1|WP_012412908.1|109189_109687_+|hypothetical-protein
MKRDIQGKFALKNEDYRLVRSLRLTDSTWVALGITSECLGLTRADYLEQIIREKALPSTVSPSNTREKDFLFPCITRQNTDSPPRNTRFQEEIEVLLAEIQNLSQKNAALMQRTAIAFSQIELELLRDRILLDLKLGKQAPGYKAVQKALNRFIAELTYPNTSVF
>NC_010630.1|WP_012412909.1|110286_110700_-|hypothetical-protein
MLGMNNDFIEQLREELGVWNNSPTECDGHSKVLSTILFNEGIEHLIWYGSFRWVGHGQVSPHYWIELPFGNLTIDYRARMWCRVMENPQLVDVEVPHSIFNPAYWNQVQYTKIQQQIPEEFGVPLEDWLFKILTVSI
>NC_010630.1|WP_012412910.1|110812_111781_-|GIY-YIG-nuclease-family-protein
MWLRYGVDLDLILVPIEDVLRGRTQLKCPYCGGELTAKKGNRKEHHFAHTNFTCREVANRSEREIPTLPLYNNFNICLTGKELQQIKTLWNRYGWKNKGIYESKINSIFIKEKLLEYNEYRLYGEYQFTKLGKIPVGALSLMLFNQVQESILWEKLQQLEKKVQVAYLDDASNFHECLWDLQIYRAELKKILSNTLYYLQIDTDKETFYKIGVTRREIQARVAEVQTDLVKHFSHVSIKVLGHWSHRGNVEKYFKYRYADYNCSIGSLTEYYKFDNPEDATAALRDLRRMKKKQLSEFEVDILAGKPSWIEQLIEEIEEERA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010630_1	1.1\|61573\|51\|NC_010630\|CRISPRCasFinder	61573-61623	51	NC_010630	Nostoc punctiforme PCC 73102 plasmid pNPUN03, complete sequence	61573-61623	0	1.0
NC_010630_2	2.1\|78308\|59\|NC_010630\|CRISPRCasFinder	78308-78366	59	NC_010630	Nostoc punctiforme PCC 73102 plasmid pNPUN03, complete sequence	78308-78366	0	1.0
NC_010630_1	1.1\|61573\|51\|NC_010630\|CRISPRCasFinder	61573-61623	51	NC_010630	Nostoc punctiforme PCC 73102 plasmid pNPUN03, complete sequence	61666-61716	4	0.922
NC_010630_2	2.1\|78308\|59\|NC_010630\|CRISPRCasFinder	78308-78366	59	NC_010630	Nostoc punctiforme PCC 73102 plasmid pNPUN03, complete sequence	78407-78465	11	0.814

1. spacer 1.1|61573|51|NC_010630|CRISPRCasFinder matches to NC_010630 (Nostoc punctiforme PCC 73102 plasmid pNPUN03, complete sequence) position: , mismatch: 0, identity: 1.0

aaatataaataccttcagaggattgaagagtaattgcaccaccatttccgg	CRISPR spacer
aaatataaataccttcagaggattgaagagtaattgcaccaccatttccgg	Protospacer
***************************************************

2. spacer 2.1|78308|59|NC_010630|CRISPRCasFinder matches to NC_010630 (Nostoc punctiforme PCC 73102 plasmid pNPUN03, complete sequence) position: , mismatch: 0, identity: 1.0

gccaaggttacagacttacagacttcggaagctacaaactctgtaacgttatccgaatg	CRISPR spacer
gccaaggttacagacttacagacttcggaagctacaaactctgtaacgttatccgaatg	Protospacer
***********************************************************

3. spacer 1.1|61573|51|NC_010630|CRISPRCasFinder matches to NC_010630 (Nostoc punctiforme PCC 73102 plasmid pNPUN03, complete sequence) position: , mismatch: 4, identity: 0.922

aaatataaatac---cttcagaggattgaagagtaattgcaccaccatttccgg	CRISPR spacer
---tataaatactagcttcagaggattgaagaataattgcaccaccatttccgg	Protospacer
   *********   *****************.*********************

4. spacer 2.1|78308|59|NC_010630|CRISPRCasFinder matches to NC_010630 (Nostoc punctiforme PCC 73102 plasmid pNPUN03, complete sequence) position: , mismatch: 11, identity: 0.814

gccaaggttacagacttacagacttcggaagctacaaactctgtaacgttatccgaatg	CRISPR spacer
accaaagttacagacttacagacttcggaagctacaaactctgaaggtttactggaaac	Protospacer
.****.************************************* *.  ***.. ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27101 : 120156

Tupanvirus(33.33%)

transposase,integrase

attL 26191:26208|attR 120784:120801

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
26191:26208	attL	NA	NA	NA	NA
WP_012407621.1\|27101_28016_+\|integrase	tyrosine-type recombinase/integrase	A0A1U9WS15	Gordonia_phage	3.1e-06	24.7
WP_041566767.1\|31930_33940_-	hypothetical protein	NA	NA	NA	NA
WP_041566746.1\|35821_36010_-	hypothetical protein	NA	NA	NA	NA
WP_012412869.1\|36010_36943_+	ParM/StbA family protein	NA	NA	NA	NA
WP_012412870.1\|36944_37355_+	hypothetical protein	NA	NA	NA	NA
WP_012412871.1\|37531_40510_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	3.1e-289	50.4
WP_012412872.1\|40533_41001_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_012412873.1\|41088_41982_+\|integrase	tyrosine-type recombinase/integrase	A0A1U9WS15	Gordonia_phage	8.8e-06	43.1
WP_012412874.1\|42331_42553_+	hypothetical protein	NA	NA	NA	NA
WP_167315730.1\|42571_42937_+	hypothetical protein	NA	NA	NA	NA
WP_041566748.1\|42942_43146_+	hypothetical protein	NA	NA	NA	NA
WP_041566749.1\|43203_43533_+	hypothetical protein	NA	NA	NA	NA
WP_012412876.1\|43671_43938_+	hypothetical protein	NA	NA	NA	NA
WP_012412877.1\|43981_44353_+	hypothetical protein	NA	NA	NA	NA
WP_012412878.1\|44592_44859_+	hypothetical protein	NA	NA	NA	NA
WP_012412879.1\|44866_45046_+	hypothetical protein	NA	NA	NA	NA
WP_012412880.1\|45110_45536_+	hypothetical protein	NA	NA	NA	NA
WP_012412881.1\|45660_46266_+	hypothetical protein	NA	NA	NA	NA
WP_012412882.1\|46320_46884_+	hypothetical protein	A0A1L2BX18	Bacteriophage	1.4e-17	34.6
WP_041566750.1\|46886_47345_+	hypothetical protein	NA	NA	NA	NA
WP_041566751.1\|47331_47796_+	hypothetical protein	NA	NA	NA	NA
WP_012412883.1\|49093_50089_+	hypothetical protein	NA	NA	NA	NA
WP_041566754.1\|50241_50469_+	hypothetical protein	NA	NA	NA	NA
WP_041566755.1\|50700_51543_+	DUF928 domain-containing protein	NA	NA	NA	NA
WP_012412886.1\|52260_54618_+	glycoside hydrolase family protein	A0A2K9KZQ8	Tupanvirus	1.4e-29	28.9
WP_012412887.1\|54816_57441_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_012412888.1\|57451_63007_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_012412889.1\|63297_63546_+	hypothetical protein	NA	NA	NA	NA
WP_012412890.1\|63731_64559_+	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_041566756.1\|64612_64813_+	hypothetical protein	NA	NA	NA	NA
WP_012412892.1\|65213_67598_-	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_052304755.1\|67705_68911_-	DUF1822 family protein	NA	NA	NA	NA
WP_012412894.1\|68936_70127_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_041566757.1\|70824_71100_+	hypothetical protein	NA	NA	NA	NA
WP_041566758.1\|71890_72130_+	hypothetical protein	NA	NA	NA	NA
WP_012412895.1\|72520_72889_+	hypothetical protein	NA	NA	NA	NA
WP_012412896.1\|73672_74641_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012412897.1\|74903_75290_+	hypothetical protein	NA	NA	NA	NA
WP_012412898.1\|75425_76280_-	hypothetical protein	NA	NA	NA	NA
WP_012412899.1\|76286_76697_-	hypothetical protein	NA	NA	NA	NA
WP_012412900.1\|76852_77200_-	hypothetical protein	NA	NA	NA	NA
WP_012412901.1\|77292_78087_+	ParA family protein	K7R2R7	Vibrio_phage	1.3e-13	37.7
WP_041566772.1\|78763_78973_+	hypothetical protein	NA	NA	NA	NA
WP_148220521.1\|79345_80011_-	hypothetical protein	NA	NA	NA	NA
WP_167315731.1\|80387_81401_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_012412905.1\|82033_95848_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	6.2e-183	28.8
WP_012412906.1\|95853_101415_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	2.1e-52	38.0
WP_012412907.1\|101411_106817_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	4.4e-52	27.1
WP_041566761.1\|107116_107524_+	hypothetical protein	NA	NA	NA	NA
WP_012412908.1\|109189_109687_+	hypothetical protein	NA	NA	NA	NA
WP_012412909.1\|110286_110700_-	hypothetical protein	NA	NA	NA	NA
WP_012412910.1\|110812_111781_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_012412911.1\|112093_112372_-	hypothetical protein	NA	NA	NA	NA
WP_012412912.1\|112403_112820_-	hypothetical protein	NA	NA	NA	NA
WP_012412913.1\|112910_114383_-	ATP-binding protein	NA	NA	NA	NA
WP_012412914.1\|114382_117100_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_012412793.1\|117546_120156_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
120784:120801	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_010628

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_010628_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_1

463747-463985

Orphan

Consensus_repeat	Method
TAAGCAAACTGGAGTTTGAATAAGTCAAA	CRISPRCasFinder
CATTTTGCTTGCACAAAACACTAAAATGAATACGCAAACT	PILER-CR

2 spacers

The CRISPR arrays of NC_010628_1

>merge|NC_010628|1|463747-463985|CRISPRCasFinder,PILER-CR
TAAGCAAACTGGAGTTTGAATAAGTCAAAGCTTATTTTGCTTGCGGAAAACACTAAAATGAATAAGCAAACTGGGGTTTGAATAAGTCAAATGACCTTTTGAGAAAGTAATATGCCTTTTTACTTTCTCAAAACACTAAAATCAATACCTGAATTTCACAAATGAGAATGAATTCAGAGATATTGAGAAAGCATTCAGGCATTGTGCTTGCACAAAACACTAAAATGAATGCGCGAACT

>NC_010628|1|1|463747-463837|CRISPRCasFinder
TAAGCAAACTGGAGTTTGAATAAGTCAAA	GCTTATTTTGCTTGCGGAAAACACTAAAATGAA
TAAGCAAACTGGGGTTTGAATAAGTCAAA

>NC_010628|1|1|463780-463985|PILER-CR
ATTTTGCTTGCGGAAAACACTAAAATGAATAAGCAAACTG	GGGTTTGAATAAGTCAAATGACCTTTTGAGAAAGTAATATGCC
TTTTTACTTTCTCAAAACACTAAAATCAATACCTGAATTT	CACAAATGAGAATGAATTCAGAGATATTGAGAAAGCATTCAGGCATTGTGC
TTGCACAAAACACTAAAATGAATGCGCGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012407177.1\|468459_470055_+\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|223451
NC_010628.1\|WP_012407176.1\|467304_468267_+\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NC_010628.1\|WP_012407165.1\|455678_456506_-\|hydrogenase-nickel-incorporation-protein-HypB	unknown	unknown	gnl\|CDD\|182479
NC_010628.1\|WP_012407169.1\|459375_459636_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|376549
NC_010628.1\|WP_041565846.1\|458007_459186_-\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
NC_010628.1\|WP_012407164.1\|452587_455518_+\|calcium-binding-protein	unknown	unknown	gnl\|CDD\|380205
NC_010628.1\|WP_086000616.1\|462215_463403_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271320
NC_010628.1\|WP_012407174.1\|465195_465462_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234609
NC_010628.1\|WP_012407181.1\|474021_474444_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565129.1\|465520_466489_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407162.1\|443917_447574_+\|NACHT-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_010628.1\|WP_012407172.1\|464060_464906_-\|NifU-family-protein	unknown	unknown	gnl\|CDD\|376458
NC_010628.1\|WP_012407178.1\|470137_472831_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226121
NC_010628.1\|WP_012407170.1\|459717_462063_-\|carbamoyltransferase-HypF	unknown	unknown	gnl\|CDD\|223146
NC_010628.1\|WP_193372270.1\|456858_457914_-\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|273984
NC_010628.1\|WP_012407163.1\|448135_451837_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|237425
NC_010628.1\|WP_012407180.1\|473408_473807_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350220
NC_010628.1\|WP_012407179.1\|473166_473412_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|226603
NC_010628.1\|WP_012407173.1\|464962_465187_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407166.1\|456496_456838_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|376468

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012407177.1\|468459_470055_+\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|223451	COG0374, HyaB, Ni,Fe-hydrogenase I large subunit [Energy production and conversion].	0
NC_010628.1\|WP_012407176.1\|467304_468267_+\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	1.48669e-123
NC_010628.1\|WP_012407165.1\|455678_456506_-\|hydrogenase-nickel-incorporation-protein-HypB	gnl\|CDD\|182479	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional.	1.17131e-117
NC_010628.1\|WP_012407169.1\|459375_459636_-\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|376549	pfam01455, HupF_HypC, HupF/HypC family.	1.28661e-30
NC_010628.1\|WP_041565846.1\|458007_459186_-\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
NC_010628.1\|WP_012407164.1\|452587_455518_+\|calcium-binding-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	1.93774e-11
NC_010628.1\|WP_086000616.1\|462215_463403_-\|hypothetical-protein	gnl\|CDD\|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	7.2312e-14
NC_010628.1\|WP_012407174.1\|465195_465462_-\|hypothetical-protein	gnl\|CDD\|234609	PRK00068, PRK00068, hypothetical protein; Validated.	0.00556183
NC_010628.1\|WP_012407162.1\|443917_447574_+\|NACHT-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	2.46156e-111
NC_010628.1\|WP_012407172.1\|464060_464906_-\|NifU-family-protein	gnl\|CDD\|376458	pfam01106, NifU, NifU-like domain. This is an alignment of the carboxy-terminal domain. This is the only common region between the NifU protein from nitrogen-fixing bacteria and rhodobacterial species. The biochemical function of NifU is unknown.	8.67871e-24
NC_010628.1\|WP_012407178.1\|470137_472831_-\|AAA-family-ATPase	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	7.06714e-14
NC_010628.1\|WP_012407170.1\|459717_462063_-\|carbamoyltransferase-HypF	gnl\|CDD\|223146	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones].	0
NC_010628.1\|WP_193372270.1\|456858_457914_-\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|273984	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.	0
NC_010628.1\|WP_012407163.1\|448135_451837_+\|PAS-domain-S-box-protein	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	6.20244e-73
NC_010628.1\|WP_012407180.1\|473408_473807_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350220	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Synechocystis sp. (strain PCC 6803) Sll0205 protein and other uncharacterized homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	6.64019e-55
NC_010628.1\|WP_012407179.1\|473166_473412_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	1.38593e-18
NC_010628.1\|WP_012407166.1\|456496_456838_-\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|376468	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA. HypA is a metallochaperone that binds nickel to bring it safely to its target. The targets for Hypa are the nickel-containing enzymes [Ni,Fe]-hydrogenase and urease. The nickel coordinates with four nitrogens within the protein. The four conserved cysteines towards the C-terminus bind one zinc moiety probably to stabilize the protein fold.	4.27579e-41

>NC_010628.1|WP_086000616.1|462215_463403_-|hypothetical-protein
MSQLPLEATENTQYLPLLSQGAEVILGNIIELEQLVIPVVPNATTMFGPRGACLLSETGPLWVSDTGHHRLLGWKNLPTRDSQPADWVIGQPDFYHEGQNAKTTPGKATLSVPTGICACGEGLAVADAWNHRVLIWKNLPEDNNVPADLVLGQVNFTDNKPNRGNQQASASTMHWPYSIFYHQGRLFIADTGNRRLLIWHQLPTENGQPADLVLGQPDMISRNENGGDSPTAASMRWCHDIAFWGENLVVSDAGNHRVMIWQGMPTENNASCAVVLGQKSFDFVEMNQGVYYPSASSLSMPYGVAVAGDWLVVADTANSRLLGWKKPESILSLQGVMADGLAGQINFQSKGENRNFGLPKRDSLNWCYGIKICGNTAVIADSGNNRILLWQFNNL
>NC_010628.1|WP_012407170.1|459717_462063_-|carbamoyltransferase-HypF
MATEEIRVRGTVQGVGFRPTVYRLAKACGLYGDVCNDGQGVLIRISGSEEALTEFVARLQTECPPLAKINQLTRIPYEGEFNFNNFVISNSVNNAIKTEIVPDAATCPQCQQEIFDPFSRFYRYPFTNCTHCGPRLSIIRAIPYDRCNTSMSAFVICPECAKEYHDVENRRFHAQPVACHVCGPTAWLERADGKAVTASMFSMLDDVDAVCTLLQKGEIVAIKGLSGIHLACDATQETVVQKLRQRKKRYHKPFALMARDIEIIEQYCTVNAKEKELLTSSAAPIVLLQAISKKLVAPSVASGQNTLGFMLPYTPLHHLILRRMNRPIVLTSGNLADEPQCIDNDEAREKLGTIADYFLFHNREIINRVDDSVVIIGDKVQTIRRARGYAPASISLPPGFDNVPQILAMGSELKNTFCLLREGEAILSQHLGDLENAAAFNAYQETLNLYLNLFEHTPEVIAIDKHPEYLSSKLGKELADTNRIPIHQIQHHHAHIAACMAENGIPLTSPPVLGIALDGLGYGDDSTLWGGEFLLADYRKFQRLATFKPVPMIGAEQAIYQPWRNTYAQLIAANLWDDCQQQYADLEIVKLLNKKPLKLLNQLIEKKINSPLASSVGRLFDAVAAAIGICPEECSYEGQTAIAMEAIVDVSSLNNDKEALIYPFSFSFSDSIYCIDSRPMWQALLYDLQQQIPQPVIAAKFHKGLANAIVEMVKRLRQENPIHQVALTGGVFQNCILLQQVSKQLETLGIKVLTHSLVPANDGGLSLGQAVIAAAKLIHKY
>NC_010628.1|WP_012407169.1|459375_459636_-|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCLGIPGQIIEITNVNHKLALVNIGGVKREVNIACIVDEQHPPEACIGDWVLVHVGFAMNRINEQEAAETLQLLQELAAAQAGINT
>NC_010628.1|WP_041565846.1|458007_459186_-|hydrogenase-formation-protein-HypD
MKYVDEFREPEKAEALCREITKLSHQLEKPIKIMEVCGGHTHSIFKYGIEEILPQTIELIHGPGCPVCVMPKGRLDDAIAISQNHNVIFATFGDAMRVPGSKTSLLQARAQGADIRMVYSPLDSLQIAKDHPDREVVFFALGFETTAPSTAFTIVQAAAEEIHNFSMFSNHVLVIPALKALLDNPDLQLDGFVGPGHVSMVIGSDPYQFISQQYNKPIVVSGFEPLDILQSIWMLLQQIVENRCEVENQYNRIVQKSGNTVALQAINKVFAVRDSFDWRGLGDIPYSGLKIKPEYAQFDAELKFTIPNLKVADHKACKCGEILKGVLKPWECKVFGTACTPETPIGTCMVSSEGACAAYYKYGRLSTIAKRTITQKPKITQEPLPACGFSLD
>NC_010628.1|WP_193372270.1|456858_457914_-|hydrogenase-expression/formation-protein-HypE
MEQVRRRQGKVRDTHITLAHGSGGKAMHDLIDDIFVSNFDNPILSQLEDQASFDLANLIQQGDRLAFTTDSYVVDPLFFPGSDIGELAINGTVNDLAVSGAKPLYLTCSVILEEGLPVEILRRVAASMNAAAKNAGIKIVTGDTKVVHRGAADKLFINTAGIGVIPRGVNISAHNIKPGDAVIINGEIGNHGTAILIARGELALETNIESDCQPLHSLVETILHICPQVHAMRDATRGGLATVLNEFALSSNVGIRLFEESIPVREEVNGVCEILGLDPLYLANEGKLVVLVSKENADNVLSTMKSHPAGKDACIIGEVISSPPGIVLLKTVFGAERIVDMLVGDQLPRIC
>NC_010628.1|WP_012407166.1|456496_456838_-|hydrogenase-maturation-nickel-metallochaperone-HypA
MHEFGITQNIVAIVTEHAKGAKVQRVLLEIGKLSAIMPDAIRFCFDICTQGTVLEGATLEILEIPGLGRCRQCGGEIYLDKPFGICNCGSVQLDLITGEELKIKEIEIEELCV
>NC_010628.1|WP_012407165.1|455678_456506_-|hydrogenase-nickel-incorporation-protein-HypB
MCVTCGCSDDGEIKITNLETDEAEHNHTHTLPDGTIITHSHGHDTHIKAPQIHAKIHNTTISLEQDILAKNNLLAAQNRGWFKGRNILALNLMSSPGAGKTTLLTQTINDLKNQLSISVIEGDQETANDAKKIKETGSKVIQINTGTGCHLDASMIDRGLQQLNPPLNSVVMIENVGNLVCPALFDLGEQAKVVILSVTEGEDKPIKYPHIFRASDVMIITKIDLLPYVNFDVQKCIVYAVEVNPKIQIFQVSATTGVGLDNWYKWVSESLLSKC
>NC_010628.1|WP_012407164.1|452587_455518_+|calcium-binding-protein
MGTYTGDNSNNTFIADDDGQPWLLSGKGGDDYLAGKSQNDRIYGDEGNDNLLGGAGNDILDGGTGNDNLYGGIGFDSLYGGDGNDIISDTDGIVDGGAGTDTLVADYSQLSNGAGIDVAYQGQNAIFSRFTGNPVLNYSNIERFEITGTQYADVLRGGTGNDIFNGGAGDDALTGGAGYDTLNGGDGNDIISDTDGIVDGGAGTDTLVADYSQLNNGAGIDVAYLGQNAIFSRFTGNPVLNYSNIERFEITGTQYTDVLRGTAGNDILNGGAGDDVLIGSAGSDTLNGGAGTDTLVSDYSQLNNGAGVDAGFNGQNAIVSRLNNSTLLNFSNIERFELTGTQYADVLRGGTGNDILNGGAGDDALTGGAGYDTLNGGDGNDRITDTDGIVDGGAGTDTLVADYSQFNNGAGVEVAYLNQNAIFSRFTGNPVLNYSNIERFEITGTQYTDVLRGNAGNDILNGGAGDDVLIGSAGYDTLNGGDGNDIISDTDGIVDGGAGTDTLIADYSQLNTATPVDVGYLGQNAIFSRISGNPVLSFSNIERFEITGSQYADALRGAAGNDILNGGAGDDALIGGAGYDTLNGGDGNDRITDTDGIVNGGAGTDTLVADYSQFNNGAGVEVAYQGQNAIFSRFTGNPVLNYSNIERFEITGTQYTDVLRGAAGNDILNGGAGDDVLIGGAGYDTLNGGDGNDRITDIDGIVDGGAGTDTLVADYSQLNNGTPVDVGYQSQNAIFSRVSGNPVLSYSNIERFELTGSQYADVLRGAAGNDILNGGAGDDALIGGAGYDTLNGGDGNDRITDTDAIVDGGTGTDTLVADYSQFSNGAGVDVAYQGQNAIFSRFTGNPVLSYSNIERFEITGSQYADVLRGTAGNDILNGGAGNDILVGGAGNDILTGGIGADQFVFNSKLEGLDVIKDFSRVEGDKIQISKIGFGITDFSGFSYNDATGALLFQGTQFATLENKPANFAVSLDIQLI
>NC_010628.1|WP_012407163.1|448135_451837_+|PAS-domain-S-box-protein
MRSLSPVDLPTLEQIVECSPLIVLPDTPVIDVIALMNRVNSSIVESKFDFSSYVLVVEETNLIGILTLRDVIRLTGMGKDLSSVKISEVMTQPVISLGLAQAQNALTALSFMRQHCIRHLPVVDDLGQLVGLITQDRIRQVIQPVHLLKLQCVTEVMVTEVIHALPTTSVLELSQIMSDRQISCVVIVAQQKAKLIPVGMITEKDIIKFHLQGLDIAQTQAQDVMSTPVLSITPTESLWTVHQLMQERKVRRLTVVGEQSELQGLVTQTNLLQVLDPLEIDSIIQVLQAKVEEQTVKLRQCNQQLEQEVEQHRQAQQELELRVAERTAELLQANVRLKREIEERKQTEIALQQREHQWKALFDRALDAIAIADDEGRYVEVNPAACKLFGVSKEELLGSTIADFAAPEFDFTQAWQQFYEQGQMLGEFNIYCPDGTVRETEFAAVANFIPHRHLSILRDVSDRQAMLRARKQTEETLRESEQRLQLALSVGNIGTWEWNLRTNQVIWSESLFTLFGLTPDTFDVSYENFLNLIVHPEDRELLHQSVLRAIDQQVPHNLEFRFIYSDGTVGWSVCKGQVLYDDTTNKPLQMIGVNIDITERKQSELEIRKFVSLADNSTEFIGMCDMNFVPFYLNPAGMQLVGLNDTQQYSETPVREFFFPEDRDFIINEFFPRVLREGRAEVEIRFRHFQTGEALWMVYSVSCVKDMNDQLIGLAAVSRNITDRKLAKQKIAEQAALIDIATDAIFVRDLENRILFWSPGAEKLYGWTAQESMGKLVHELFNVESLSQLAAGFKTTLEQGYWQGELEKTTKTGRKIIVASRWTLVQNQFGQSQSILSVNTDITEKKQLEQQFYRAQRLESVGTLASGIAHDLNNVFAPIIMIAELLPLRYKNVDLQTQELFKTLENSSQRGANLVKQILTFTRGTEGKRILLQPGHLLQELVKVIKQTFPKSIEIVNDIPINTLWMVQADPTQLEQVFMNLAVNARDAMPNDGMLTINAENRMIDETNARMHLDAKAGGYMVVTVSDTGTGIPPEFLERIFDPFFTTKEVGKGTGLGLSTVLGIVKNHGGFVEVSTQVGKGTRFQVFLPRGEGKATETITKAELPEGNGELILVVDDEDLVKQTNQGTLEDYNYKTLVANDGIEAIALYAQYKERISAVLLDMSMPNMDGLTTISILRTFNPNIKIIATSGLPANEQKAIAIGAKKFLSKPYTATDLLTTLSAVIGHPGEPQS
>NC_010628.1|WP_012407162.1|443917_447574_+|NACHT-domain-containing-protein
MDIDQALAFTDALVFAKSRIHLSDLQQAMLRESWSLERQSYDRIADIYGYSPTYLKHDVGPKLWKLLSEVLGEKVNKTSFRTAIERATAQSNQYIEEKTRVKFTDNLLVAEAQTSYQDWGDAIDVDFFYGRQAELAQLQQWILVDQCRLVAVSGMGGIGKTSLSIKLAQQLQSDFKWVIWRSLRNAPPVQEILTELLKLLSNQQEIDYPETVEGKISRLLHYLRSQRCLVIFDNIETILQHNEKSKSSYIKGYEYYGEIFRQIGEIRHQSCLVLTSRDQPPEVGLLEGASLPVRAFQLGGLKKTEAQELLHLKGNFQGSTEEWNRLVEGYAGNPLALKIIATTIQNLFDGSISDFLNQQAFVFGNIRNLIGQQFERLSESEKTVIYWLAIYRDPASFSELRSDIFPRRSPQELIDILESLEQRSLIEKTKPTLIEKHQTQFSLQPVVMEYATEKLVAQVCQEILAGLEANADQKILLFKTHALLKAQAKDYVRETQVRFILKPILERLLLDRLLIEVSEQLAIENLLTQCLTKLRGTSSLKTGYAGGNILNLLCQLQSTLTNYNFSNLTIWQAYLQDVNLHNVNFESSDLSQCVFAETFGMVFAGIAFSPDGTLLATGDAEGELRLWEVATGKLVVNFAGHLGWVWSLAFSPDGQLLASCSSDKTIRLWDVNTGKCLRTLSGHTSSIWSVAFSADGQMLASGGDEPTIRLWNVNTGDCHKIFSGHTDRILSLSFSSDGQTLASGSADFTIRLWKISGECDRILEGHSDRIWSISFSPDGQTLVSGSADFTIRLWEVSTGNCFNILQEHSDRVRSLAFSPNAQMLVSASDDKTVRIWEASTGECLNILPGHTNSIFSVAFNVDGRTIASGSTDQTVKLWDVNTGRCFKTLKGYSNSVFSVAFNLDGQTLASGSTDQTVRLWDVNTGTCLKKFAGHSGWVTSVAFHPDGDLLASSSADRTIRLWSVSTGQCLQILKDHVNWVQSVAFSPDRQILASGSDDQTIRLWSVSTGKCLNILQGHSSWIWCVTFSPNGEIVASSSEDQTIRLWSRSTGECLQILEGHTSRVQAIAFSPDGQILSSAEDETVRLWSVDTGECLNIFQGHSNSVWSVAFSPEGDILASSSLDQTVRIWDRHTGVCLKVLPVLPHAMRSAIAFGKSTEHYAIASGSQNGTIQIWDAQTGECLKILNPDRPYQGSNITGVTGITTAQKDVLKALGAFEI
>NC_010628.1|WP_012407172.1|464060_464906_-|NifU-family-protein
MTNLEELIQEINRFEAIISEWDESQRCVAVGLKRAIEALHKAALTNLIKNLKQESMPALRHAVADELVYAVLLYHELVKPPKPPLAQRIETALEEVRPGLKSHDGDVELVAIKSPDTVEVRLIGTCSSCPASTLTLSQGVEQAIKNHCPEITKVVAVNNSPAVNNANSGLISPFSSKITCTWMKVATLDEVPEFSVVVVQLAGTSLILHRQGVTVKCYRNACTHLGSPLEKGKVENGIITCPAHGFQYKLETGKCLTVPDVSLQSYPVKVKDDKVFVKLQK
>NC_010628.1|WP_012407173.1|464962_465187_-|hypothetical-protein
MLELGWLSAKLFFKGKLIRNPIFFVTQTTIGIAIGFLLLVLLAQAPIPFYLPIILSSLVTGMIMPFLFKDFKTK
>NC_010628.1|WP_012407174.1|465195_465462_-|hypothetical-protein
MREILTTPNLINFLTSLADGDLNIATELVWLIIATALAMVGGAIGGMLLAGKDIGYQLSAMLGALFAPAGVIPAIFLGLIALNFLTNY
>NC_010628.1|WP_041565129.1|465520_466489_-|hypothetical-protein
MTPSITDSAVKAAIAAVASESATAEEKIQMLIEIAQGFQKKPKAAQDLRNAVGLYYRAYEMCGEEYPLLKARAKVGMAGTLQAIPDADYQLLMQAKVGYEEALPILQQLATPQEVAETQMNFGLVLQSLVPFNLARITDSIQAYHEALRVFTWEDYPQEYAILYNNIAIAYLSMPLASEREYLRQGLAVQSFEVALKHINLIDHPREYAMLQNNLGNALQYLVSSHPVENNLRAIAAYDEALKVRNPKDTPLEYANTISNKANALFNLPDDPEKPEAGNPQNLLQARIYYQSALEIFTEYQQIAQAEVVVQALQDVEAEMKG
>NC_010628.1|WP_012407176.1|467304_468267_+|hydrogenase-small-subunit
MTNVLWLQGGACSGNTMSFLNAEEPTVCDLIADFGINILWHPSLGLELGNDLQILLRNCISGTIPLDILVFEGSVVNAPNGTGEWNRFADRAMKDWLADLAKVAKFIVAVGDCATWGGIPAMSPNPSESEGLQFLKRQEGGFLGKDFVSQAGLPVINIPGCPAHPDWITQILVAIATGRIADIAFDELNRPQTFFNTYTQTGCTRNVHFAYKASTAEFGQRKGCLFYDLGCRGPMTHSSCNRILWNRVSSKTRAGMPCLGCTEPEFPFFDLKPGTVFKTQTVMGVPKELPPGVNKKDYALLTMVAKDAAPPWAEEDFFTV
>NC_010628.1|WP_012407177.1|468459_470055_+|nickel-dependent-hydrogenase-large-subunit
MTIQSLDISPVGRVEGDLDVRVDIEHGRVVNAWTHAELFRGFEVILRGKDPQAGLIVTPRICGICGGSHLTSASWALDTAWETEVPRNAILARNLGQIVETIQSIPRYFYGLFAIDLTNKKYRNSRHYEEAVRRFAAFTGKSYELGITISAKPVEIYALLGGQWPHSSYMVPGGVMCAPTLTDITRAWAILEYFRTNWLEPVWLGCSLERYEQIQTYDDFRDWLDEDRNHRDSDLGFYWRMGLDIGLDRYGAGVGKYVTWGYLAHEDKYQKPTIEGRNAAMIMKSGVYDSFADTHVLMDQSFTRENTTHSWYDEGTEDIHPSDRTTKPTAINTKDFDNAYSWSSAVLHKDFGRLETGPLARQLVAGGQHGESWQHYDGFILDVFKQMGGPSIHVRQLARLHEIVKLYRQAEHCLREFKLNDPWYIKPKEKDGRGWGATEAARGSLSHWVEIEGGKIKNYQVIAPGTWNIGPRDGEGIRGPIEEALIGTPIYDSSDPVEVGHVARSFDSCLVCTVHAHDAKTGEELARFRTA
>NC_010628.1|WP_012407178.1|470137_472831_-|AAA-family-ATPase
MYLKTVFIRFYKSFNDDFIRKNNNKVKPKPWEKIDNAFYPYIEVPLDPKITTIVGANESGKSHLLSAIEKAISGNNIERSDFCRYSHFFTVKQNELKYPDFGTEWSDLSKSEEVSLRKIIEIPENIIFDRFLVFRRNISNIIVYLPEKGDYRPYRIGERQVSELQSLLPEILRIESDVALPSSVPIKKLVHLGQEKYLDSRRFELLDREQRNRIVDALDEFSDNPELVTKVRLFWGENKDVVDPDAIETMKSIISALDEAVFSLNEKERRDKETNLAYKLICKIAQVDTNALLDLAGAIKKGMQGYANGIIEKINRQLSINLNFPNYWVQDRNFCLKVMARDYDLVFTITDRTGTEYSFEERSQGLRYFLSYYIQYRSHEPHPNKTEILLMDEPDAYLSSQAQQDLLKVFDLFAIPAQGSHLTHPIQVVYVTHSPFLIDKNHAERIRVLRKGNEDEGTRVVKDAAKNHYEPLRSSIGAYVGETAFIGNCNLMVEGISDQILIAGATTYLRANGAPNLETLDLNQITIVQSGSASHIPYLVYLARGRDVEQPAVIVLLDSDNSGNEAKKQLLGKGGQHRRPVLKEQFILQLTDLKEEFSLVTDPLTVKIEIEDIIPLSICIQATKFYLKEFLQLDETEFCFLTEDLVLKKLANQTILDAIQASLLEFPDKGLQINKVGFARNVIQVVNEWKQKRDSLDKHQSDALQVFEKNFRVLFKKLNIMQRRARQRLTDERLSQKIERLKKDFIALHPISARREDGVILLDEIEVILENNIENEAIKEIEAIKNALQNLRRDYKLEIDMSKTIDDYIGFQKGLEIIKYAGLLASQEETPDEPQAKKSATSESEEVPEKVHIDNLIVDEHQQVIIEQVPTISEVKIAEVSNNSTKANQRRKSRIRS
>NC_010628.1|WP_012407179.1|473166_473412_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
METVNIHQAKTNLSKLLSRVELGEEIIISNRGVPIAKLVPFRTSSNRLNSLGQDKGRFVVPDDFNAPLPEEILAAFEGGEE
>NC_010628.1|WP_012407180.1|473408_473807_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MKLLLDTQCWLWWFTQPELLNESAIAHIADETNELWLSVASIWEMGIKVAIGKLPLADPLDSYISSRMTVLAMRSLEITASHALQAAALPLHHRDPFDRMLIAQAQIEEMTLVSADSMFNKYDISLLWAAKS
>NC_010628.1|WP_012407181.1|474021_474444_+|hypothetical-protein
MSDLALHNYLPRVPDAALQEYIEWCVLEQAQAAECNFTPDRSKLDNLLPEDYIPKLVEQFMKVKPDPIKAGLVAAIAGKEADKHALSGLAIAADFVSLYVKYLIPKEGSTKEQAEEILTQASQHQYEKLTEVAKKHGVEF

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Crispr_ID: NC_010628_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_2

509305-509417

Orphan

Consensus_repeat	Method
ATATAGAGTAGCGTGTTGTAGAGTTGGGGCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_2

>merge|NC_010628|2|509305-509417|CRISPRCasFinder
ATATAGAGTAGCGTGTTGTAGAGTTGGGGCGATCGCTCCAAGGGGCTACTTTTTGTGCATCTCACATAAAATCTCTAAATATATAGAGTAGCGTGTTGTCGAGTTGGGGCGAT

>NC_010628|2|2|509305-509417|CRISPRCasFinder
ATATAGAGTAGCGTGTTGTAGAGTTGGGGCGAT	CGCTCCAAGGGGCTACTTTTTGTGCATCTCACATAAAATCTCTAAAT
ATATAGAGTAGCGTGTTGTCGAGTTGGGGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012407222.1\|514731_515631_-\|Fe-S-cluster-assembly-protein-NifU	unknown	unknown	gnl\|CDD\|273921
NC_010628.1\|WP_012407212.1\|502554_503133_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407214.1\|504298_505384_+\|RNA-directed-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|239569
NC_010628.1\|WP_012407213.1\|503258_503606_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407210.1\|500149_501106_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|370323
NC_010628.1\|WP_012407220.1\|512908_513802_-\|nitrogenase-iron-protein	unknown	unknown	gnl\|CDD\|237312
NC_010628.1\|WP_148220399.1\|508799_509102_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407209.1\|498892_499777_+\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|369321
NC_010628.1\|WP_012407224.1\|516978_517335_-\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|224071
NC_010628.1\|WP_012407225.1\|517438_518890_-\|nitrogenase-cofactor-biosynthesis-protein-NifB	unknown	unknown	gnl\|CDD\|273539
NC_010628.1\|WP_193372253.1\|509598_509754_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350312
NC_010628.1\|WP_012407221.1\|514150_514507_-\|globin	unknown	unknown	gnl\|CDD\|366493
NC_010628.1\|WP_012407208.1\|497396_498584_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380205
NC_010628.1\|WP_148220401.1\|519988_521587_-\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|225044
NC_010628.1\|WP_167315557.1\|497077_497233_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_193372271.1\|506288_507815_+\|slipin-family-protein	unknown	unknown	gnl\|CDD\|259816
NC_010628.1\|WP_012407211.1\|501721_502387_-\|TraX-family-protein	unknown	unknown	gnl\|CDD\|368639
NC_010628.1\|WP_012407223.1\|515735_516944_-\|cysteine-desulfurase-NifS	unknown	unknown	gnl\|CDD\|132443
NC_010628.1\|WP_012407219.1\|510150_510954_+\|DUF4935-domain-containing-protein	unknown	unknown	gnl\|CDD\|374474
NC_010628.1\|WP_041565131.1\|511302_512745_-\|nitrogenase-molybdenum-iron-protein-alpha-chain	unknown	unknown	gnl\|CDD\|162284

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012407222.1\|514731_515631_-\|Fe-S-cluster-assembly-protein-NifU	gnl\|CDD\|273921	TIGR02000, Nitrogen_fixation_protein_NifU, Fe-S cluster assembly protein NifU. Three different but partially homologous Fe-S cluster assembly systems have been described: Isc, Suf, and Nif. The latter is associated with donation of an Fe-S cluster to nitrogenase in a number of nitrogen-fixing species. NifU, described here, consists of an N-terminal domain (pfam01592) and a C-terminal domain (pfam01106). Homologs with an equivalent domain archictecture from Helicobacter and Campylobacter, however, are excluded from this model by a high trusted cutoff. The model, therefore, is specific for NifU involved in nitrogenase maturation. The related model TIGR01999 homologous to the N-terminus of this model describes IscU from the Isc system as in E. coli, Saccharomyces cerevisiae, and Homo sapiens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	1.94575e-148
NC_010628.1\|WP_012407223.1\|515735_516944_-\|cysteine-desulfurase-NifS	gnl\|CDD\|132443	TIGR03402, Cysteine_desulfurase_NifS, cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.	0
NC_010628.1\|WP_012407214.1\|504298_505384_+\|RNA-directed-DNA-polymerase	gnl\|CDD\|239569	cd03487, RT_Bac_retron_II, RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	1.15833e-92
NC_010628.1\|WP_012407210.1\|500149_501106_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|370323	pfam09150, Carot_N, Orange carotenoid protein, N-terminal. Members of this family adopt an alpha-helical structure consisting of two four-helix bundles. They are predominantly found in prokaryotic orange carotenoid protein, and carotenoid binding proteins.	3.81519e-90
NC_010628.1\|WP_012407220.1\|512908_513802_-\|nitrogenase-iron-protein	gnl\|CDD\|237312	PRK13236, PRK13236, nitrogenase reductase; Reviewed.	0
NC_010628.1\|WP_012407209.1\|498892_499777_+\|SH3-domain-containing-protein	gnl\|CDD\|369321	pfam07335, Glyco_hydro_75, Fungal chitosanase of glycosyl hydrolase group 75. This family consists of several fungal chitosanase proteins. Chitin, xylan, 6-O-sulphated chitosan and O-carboxymethyl chitin are indigestible by chitosanase. EC:3.2.1.132. The mechanism is likely to be inverting, and the probable catalytic neutrophile base is Asp, with the probable catalytic proton donor being Glu. (see the Chitosanase web-page from CAZY).	4.39937e-17
NC_010628.1\|WP_012407224.1\|516978_517335_-\|4Fe-4S-binding-protein	gnl\|CDD\|224071	COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion].	1.92682e-07
NC_010628.1\|WP_012407225.1\|517438_518890_-\|nitrogenase-cofactor-biosynthesis-protein-NifB	gnl\|CDD\|273539	TIGR01290, FeMo_cofactor_biosynthesis_protein_NifB, nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. NifB belongs to the radical SAM family, and the FeMo cluster biosynthesis process requires S-adenosylmethionine. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation].	0
NC_010628.1\|WP_193372253.1\|509598_509754_+\|hypothetical-protein	gnl\|CDD\|350312	cd18745, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	0.00180729
NC_010628.1\|WP_012407221.1\|514150_514507_-\|globin	gnl\|CDD\|366493	pfam01152, Bac_globin, Bacterial-like globin. This family of heme binding proteins are found mainly in bacteria. However they can also be found in some protozoa and plants as well.	1.92298e-45
NC_010628.1\|WP_012407208.1\|497396_498584_+\|hypothetical-protein	gnl\|CDD\|380205	NF033203, entero_EhxA, enterohemolysin EhxA. Members of this family are the RTX toxin called enterohemolysin or EhxA, because it is found in enterohemorrhagic Escherichia coli (EHEC) strains such as O157:H7.	0.00180616
NC_010628.1\|WP_148220401.1\|519988_521587_-\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	2.38559e-36
NC_010628.1\|WP_193372271.1\|506288_507815_+\|slipin-family-protein	gnl\|CDD\|259816	cd13438, SPFH_eoslipins_u2, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in bacteria. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Bacterial SLPs remain uncharacterized.	9.02046e-104
NC_010628.1\|WP_012407211.1\|501721_502387_-\|TraX-family-protein	gnl\|CDD\|368639	pfam05857, TraX, TraX protein. This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.	2.43043e-32
NC_010628.1\|WP_012407219.1\|510150_510954_+\|DUF4935-domain-containing-protein	gnl\|CDD\|374474	pfam16289, DUF4935, Domain of unknown function (DUF4935). This family consists of uncharacterized proteins around 350 residues in length and is mainly found in various species, such as Prevotella, Pseudomonas, Leptospira and so on. The function of this family is unknown.	2.56436e-24
NC_010628.1\|WP_041565131.1\|511302_512745_-\|nitrogenase-molybdenum-iron-protein-alpha-chain	gnl\|CDD\|162284	TIGR01282, Nitrogenase_molybdenum-iron_protein_alpha_chain, nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases. [Central intermediary metabolism, Nitrogen fixation].	0

>NC_010628.1|WP_148220399.1|508799_509102_+|hypothetical-protein
MWNCDTWNCGIWNCGTWNCGIWNCGTWNCGIWNCGTWNCGTWNCGTWNCSIGGKDAPPITHFISASESSSTSTWLKLSCALFFIFAISLLLGLKNTGIHQ
>NC_010628.1|WP_193372271.1|506288_507815_+|slipin-family-protein
MWETFYIKPNEIGILYHRSDFKKILQPGTHTYLGWHWQVKIYDLNQPLAQIENLELLLRNHEAELQQDLLIIRTAFNQVALVRYGQNWVSVAPNKLIAFWRGFIEVESYLFNLEESLELPNSFVQQLRSVALNGVKKFQISESEIGLLYLQNNFVRPLEPGEYAFWSVDRDVTVRTLSRIIPNPDFPLEDVLIEKHPDFIAAYCEVVQLQTSQVAIVRYRGKVISILPPTTRKLFWQGVAVEILDIIADAQLQPSLVAELVEGSTEVKLLSRNCLHICQVPAQHIGLVYINQEFQGQRSPGVHAWWLFGRSFQTETIDLRLQNMEVSGQDILSKDKVPLRLNLTAGYRIQDPLRAKNGLSDISGFLYKELQFALRGAVGERNLDALLEDKGAIDRSISEYIRQKAAEYGIEVDSVGVKDIILPGEIKTILSKVVEAEKAAQANVVRRREETAATRSMLNTAKVMEDNPVALRLKELEVLERIAEKIDRIQVNGSLDSILTDLIRMNPQ
>NC_010628.1|WP_012407214.1|504298_505384_+|RNA-directed-DNA-polymerase
MYSQNLTTIPLATESNLERLETDNLALLRSHGLAEYNTAEEIAFAMVISLEKLHFLTTSTSLTRHYLPFKISKKTGGKRIISAPKPELKAAQRWILENILEKLEVHNAAHGFCKNRSIVTNAKPHVGANVIVNIDLQNFFQSISYKRIKELFSGFGYSESTATIFGLICTTAEIAINGQINHTASENRHLPQGSPASPAISNLVCRNLDIRLAAIAENLGFCYTRYADDLTFSTSEDASSKISNLIKNTKFIIHGENFTVNDNKTKISSKSVQQEVTGVIVNTQLNISKKTLKAFRATLYQIEQEGLSGKSWGKSTNLIAAITGFANYVAMINPDKGAEFKSSVERIKQKYGGSQTDEVRF
>NC_010628.1|WP_012407213.1|503258_503606_+|hypothetical-protein
MSLNPLTQLISERGFDRFQSGLRSRFAAYHLKYTLTYCKPSDNPAMCLDFESLLHLGRVTVWESGACEMDILEISTGNNVFYESHHFNNEKQFHQTYLRLVIFMRDMLRLKSDNI
>NC_010628.1|WP_012407212.1|502554_503133_+|hypothetical-protein
MAKRKKSNLQWIKETLELKPDHRWESPSGYKIFVADRGAVRFNVPQSWVLEPQDKSFKFLDKKPPNDDCCLEVSFNRLPPNDWSQFPLKSTLKKVLEDDSRNIISKGEIVTIKRQTARIVWTEMKFIDVQEEPREAFSRTCIGLGSNVQCLITFDYWADQAEQLIPVWDEAMRSLTLGLYIRDPMTGLAFPD
>NC_010628.1|WP_012407211.1|501721_502387_-|TraX-family-protein
MIKVSAFSIKILAAVFMVMDHVCYLLMPEFRILHFIGRLSFPLFAWLLAKGEKHTQNVYRYGSRLLITAIISQPIYSVVFQSLSLNILYTLVLGLVMLRLVRHYSQLWQQLIITGLSAAVAESLGVEYGAYGIGVIFLMSLTDKLKPRVWLLCWCIFNFILVTLFIGNIFQHWAILAGFIVFQFNGKQGQRARWFYLFYPAHLIILGIINYLIHSRYSNPL
>NC_010628.1|WP_012407210.1|500149_501106_-|nuclear-transport-factor-2-family-protein
MNYTIESARNIFSSTQVADAVPATTAMFAELNIDDQLAFLWYAYAELGRTITPAAPGKANLQLMEGIFNEIKQMSHEEQTQLMRDLASNADTPISRSYAYFGVNAKLGFWWQLGEWMKEGIVAPMPVGYQMSTQVKAVLEAVQKIDQSQQITVLRNTVVNMGFDPSLADKKQAQINFKFPRTSLSPQFTIEGVTEPTVLKYIEAMNADNFEAAVALFANNGALQPPFQKPIVGREAITAYLRDEGQGLVMKPTKGVSETIEDGYTQHKITGTVETPWFGGNVGMNIAWRFLLNPQGQIYFVAIDLLASPKELLNLTRK
>NC_010628.1|WP_012407209.1|498892_499777_+|SH3-domain-containing-protein
MQQFKVTSDSLNIRSAPIVDDTNRIGVLPKSQIVSKIENLDDNKWLKVATILEGKILEGFVSQKFISPITTFSINTLMKIGGVSIQQADGESAIFYEAGMSINADGAPNAYHPADTGIDFLANAGNPGNWWAIVVNKDGNPFIQSSTDPYPGYYISTTALSDSGFVKQDPRRYVDSTKIPYIVLPGNSDFKKLIGIKLGDFAVVYNTNNEKLAFAIYADIGPKNQIGEGSIALSQALGNDPLVRSRVRQGIPKGIVYVVFPGSGNGQPRIISEIEAETKRLFEIWGGIERIKSL
>NC_010628.1|WP_012407208.1|497396_498584_+|hypothetical-protein
MTTQVFRGITYTEQVIQESNQRVCGTANPDWFVVEGNNNVVNTRDGNDVVLLAREIDLIYLSTTFNGEVLQTSPLSSNPDGISANVDTGGGDDYVSLGSGNYKIHLGSGNNFLDDYGGNYLFDADGTNIIGLGTIPKVIASAGAGDDIFYLGGFANRNIDAGKGNNLILLGSGDANIKTGSGNDIITSELSIATYIFFATGLPLYNQTINAGDGDNQIAVAPYGETTVKTGCGEDFILAYGIPGSSDTKIFTGNGNDTIITIDTNSTIKSGSGDDLIFAGSGDDTILVGNGNDLVNLRGGTVSLPDPLSRDTNLFGSSVEVIGGGNDTVYLGQGRDTVILGSIGFATIYGFDCNDRLDVTGLNASFTRIGHDTLINSSGSSLGVLKGYTGSVHLA
>NC_010628.1|WP_167315557.1|497077_497233_+|hypothetical-protein
MLSQSATHYNIKYPKVLTKAEPHHQPNLKAKYRAGSVDRVVKFDWRSQLQA
>NC_010628.1|WP_193372253.1|509598_509754_+|hypothetical-protein
MRAITTTVYFFYCDVYDGLFGVALSRKSVLLTRNHRDLGKLPGLLIEVVTV
>NC_010628.1|WP_012407219.1|510150_510954_+|DUF4935-domain-containing-protein
MNALIFIDTNIFLDFYRVRGGEQKLNLLKRVDDHHDRIITTAQVEMEYKKNRQIVILESLNKFKTPDWGGLTPPAFLSDAQPAIAITKSKSEISSQQNKLKKRIEAILKNPSTNDPVFKILQRLFRSKSDFNLSREKKIRFKIRGLAWKRFILGYPPRKDKDTSIGDAINWEWIIHCAENTEKDIILVTRDTDYGVNYNKELILNDWLSQEFKQRVGRKRKIIITDRLTQAFKTISVTVTKQEEIEEDSLLEEKIRNTEEFSLENEF
>NC_010628.1|WP_041565131.1|511302_512745_-|nitrogenase-molybdenum-iron-protein-alpha-chain
MTPPENQNIIEERKELIKEVLDAYPDKAKKKREKHLSVYEEGKSDCGVKSNIKSLPGVMTARGCAYAGSKGVVWGPIKDMIHISHGPVGCGYWSWSGRRNYYIGTTGIDTFGTMHFTSDFQERDIVFGGDKKLVKLIQELDVLFPLNRGVSIQSECPIGLIGDDIEAVARKTSKEIGKPVVPVRCEGFRGVSQSLGHHIANDMVRDWVFTRSDQAKKDGTLKFEGTPYDVAIIGDYNIGGDAWASRILLEEIGLRVVAQWSGDGTINEMLMTPNVKMNLIHCYRSMNYISRHMEEAYGIPWLEYNFFGPTKIAESLREIASKFDETIQANAEKVIAKYQPTMDAVVAKYRPRLDGKTVAIMVGGLRPRHVVPAFQDLGMKMIGTGYEFAHNDDYKRTTHYIENGTIVYDDVTAYEFEEFIKALKPDLVASGVKEKYVFQKMGLPFRQMHSWDYSEPSDRSSTSYNARFFRDEIKKSLFLA
>NC_010628.1|WP_012407220.1|512908_513802_-|nitrogenase-iron-protein
MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDIELEEVMLTGFRNVRCVESGGPEPGVGCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAMYAANNIARGVLKYAHTGGVRLGGLICNSRNTDREIELIETLAKRLNTQMIHFVPRDNIVQHAELRRMTVNEYAPESNQANEYRTLATKIIDNKNLAIPTPIEMEELEELLIEFGILESDENTAMLVGKSAAEAPVV
>NC_010628.1|WP_012407221.1|514150_514507_-|globin
MSTLYDNIGGQPAIEQVVDELHKRIATDSLLSPIFAGTDMAKQRNHLVAFLGQIFEGPKQYGGRPMDKTHAGLNLQQPHFDAIAKHLGEAMAVRGVSAENTKAALDRVTNMKGAILNK
>NC_010628.1|WP_012407222.1|514731_515631_-|Fe-S-cluster-assembly-protein-NifU
MWDYTDKVLELFYDPKNQGEIEETGEAGVKVATGEIGSIACGDALRLHLKVEVESDKILDARFQTFGCTSAIASSSALTEMVKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNYRGIPLATHDDDDEGALICSCFGISESKIRRVILENHLTDAEQVTNYVKAGGGCGSCLANIDDIIRSVQQEYASPALNNYGVQVATEIVTSKERSLTNVQKIALIQKVLDEEVRPVLIADGGDVELYDVEGDRVKVVLQGACGSCSSSTATLKIAIEARLQDRVSKSLVVEAV
>NC_010628.1|WP_012407223.1|515735_516944_-|cysteine-desulfurase-NifS
MQNNCIYLDNNATTKVDPEVIEVMLPYLTDYYGNPSSMHTFGGQVGKAVRTAREQLAAILGADESEIVYTSCGTEGDNAAIRAALLAQPEKRHIVTTQVEHPAVLNVCKQLETQGYSVTYLSVNHQGQLDLDELEASLTGNTALVTIMYANNETGTIFPIEQIGLRVKEYGAIFHVDAVQAVGKIPLNMKTSTVDMLTLSGHKLHGPKGIGALYIRRGVRFRPFMIGGHQERGRRAGTENVPAIIALGKAAELELLHLEEATTRERKLRDRLEQTLLAKIPDCVVNGDVTQRLPNTTNIGFKYIEGEAILLLLNKYGICASSGSACTSGSLEPSHVLRAMGLPYTTLHGSIRFSLCRYTTEAEIDQVIEVMPSIVERLRALSPFKNDDAGWLQGQEQALAHR
>NC_010628.1|WP_012407224.1|516978_517335_-|4Fe-4S-binding-protein
MAYKILTSQCISCNLCLTVCPTNAVKVVDGQHWIDPELCTNCVGSIHTVPQCKAGCPTCDGCVKQPSDYWEGWFANYNRVVAKLTNKQDYWERWFQTYSQKYSEQLQKRQSQSVGSEA
>NC_010628.1|WP_012407225.1|517438_518890_-|nitrogenase-cofactor-biosynthesis-protein-NifB
MTSPSTRLLNSNATESPTQAKSGGCGCDSTTSTTVERDEKLQERIAKHPCYSEDAHHHYARMHVAVAPACNIQCNYCNRKYDCANESRPGVVSELLTPEEAAHKALVIGGKIPQMTVVGIAGPGDPLANPEKTFRTFELIAAQAPDIKLCLSTNGLMLPDYIDRIKQLNIDHVTITINMVDPEIGAKIYPWVHYRRKRYRGLEGAKILHERQMEGLQALKDADILCKVNSVMIPGINDHHLVEVNRVIREKGAFLHNIMPLISAPEHGTHFGLIGQRGPTPKELKEVQDNCSGNMKMMRHCRQCRADAVGLLGEDRSQEFSKEKFLEMAPEYDMEQRATVHEGIEKFKEELKVAKDKALAGKKIANSPKVLVAVATKGGGLVNQHFGHAKEFQIYEVGGNEVRFIGHRKIDQYCQGGYGEEASFEHIMKAIADCKAVLVSKIGNCPQEKLQEAGIKTVEAYDVIEKVALEFYEQYVKELGNNE
>NC_010628.1|WP_148220401.1|519988_521587_-|PQQ-dependent-sugar-dehydrogenase
MLRRILSASLLSLIPSVASLITLEVFSPTALGQPPAASVETKLTVPSSMNYAPFNINRYLKVPPNFSIAVYARINKARFMAVAPNGDLLVSQPSANKVLIVRANGSKDPIISDFVTGLRKPHDIVFHKINNTTYVYISETHQINRFIYNSGDLTAKNRQIVVTGLPDSSTGELKGAYGHELKNIALDANHKLYVSIASTCNACKEDTISNPVRGAVYQYNADGSNRRLFAQGLRNAEGLAFLPNTNDLWVVVNNRDNIAYPFNDGSGNYGKIIPSYVDDHPPEEFTRVQDGGNYGWPFCNPNPDTSNGVNNMPFDRDYEFNANGKVNCNAMDRISKGIQAHSAPLGLTFLQNTNFPSLYSNGAVAGLHGSWNRQKKTGYKIAYFPWNNSTKAPEQEMDLVNGWLVPGTQEIWGRPVDMVVDQQGNLLISDDYSGTIYKLSYTPSAKVVKAYRDANFAGSSQSFPTTPGVYKANQGDLKVVGNDAISSLSVPSGTVVRVCQHETGGRCREFSPGDYKSVGADFDNIISFIEVK

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Crispr_ID: NC_010628_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_3

723990-724316

Orphan

Consensus_repeat	Method
GTTGCAAAACACCTC-ATCCCTGATAGGG----------ATTCAAAC	PILER-CR
GTTGCAAAACACCTCATCCCTGATAGGGATTCAA	CRISPRCasFinder
ACCTCATCCCTGATAGGGATTCAAAC	CRT

4 spacers

The CRISPR arrays of NC_010628_3

>merge|NC_010628|3|723990-724316|PILER-CR,CRISPRCasFinder,CRT
GTTGCAAAATACCTCATCCCTGATAGGGATTCAAACAACTTCAATCGCTTTTGCTGCACCGTATTTTTCGGCAGTTGCAAAATACCTCATCTCTGATAGGGATTGAAACGATTCAGGAATACTTACAGGAGATTTTATAATCTTTGTTGCAAAACACCTCATCCCTGATAGGGATTCAAACTTTTATTACTTGACTTGCTAAAACAAAACCTTTATAGTTGCAAAACACCTCATCCCTGATAGGGATTCAAGCAACGGCGTGTCTTCAAAGGTAAAGGTTTGGCTTTGGCCGTTGCAAAACACCTCATCCCTGATAGGGATTCAAAC

>NC_010628|3|2|723990-724316|PILER-CR
GTTGCAAAATACCTCATCCCTGATAGGGATTCAAAC	AACTTCAATCGCTTTTGCTGCACCGTATTTTTCGGCA
GTTGCAAAATACCTCATCTCTGATAGGGATTGAAAC	GATTCAGGAATACTTACAGGAGATTTTATAATCTTT
GTTGCAAAACACCTCATCCCTGATAGGGATTCAAAC	TTTTATTACTTGACTTGCTAAAACAAAACCTTTATA
GTTGCAAAACACCTCATCCCTGATAGGGATTCAAGC	AACGGCGTGTCTTCAAAGGTAAAGGTTTGGCTTTGGCC
GTTGCAAAACACCTCATCCCTGATAGGGATTCAAAC

>NC_010628|3|3|723990-724314|CRISPRCasFinder
GTTGCAAAATACCTCATCCCTGATAGGGATTCAA	ACAACTTCAATCGCTTTTGCTGCACCGTATTTTTCGGCA
GTTGCAAAATACCTCATCTCTGATAGGGATTGAA	ACGATTCAGGAATACTTACAGGAGATTTTATAATCTTT
GTTGCAAAACACCTCATCCCTGATAGGGATTCAA	ACTTTTATTACTTGACTTGCTAAAACAAAACCTTTATA
GTTGCAAAACACCTCATCCCTGATAGGGATTCAA	GCAACGGCGTGTCTTCAAAGGTAAAGGTTTGGCTTTGGCC
GTTGCAAAACACCTCATCCCTGATAGGGATTCAA

>NC_010628|3|1|724000-724316|CRT
ACCTCATCCCTGATAGGGATTCAAAC	AACTTCAATCGCTTTTGCTGCACCGTATTTTTCGGCAGTTGCAAAAT
ACCTCATCTCTGATAGGGATTGAAAC	GATTCAGGAATACTTACAGGAGATTTTATAATCTTTGTTGCAAAAC
ACCTCATCCCTGATAGGGATTCAAAC	TTTTATTACTTGACTTGCTAAAACAAAACCTTTATAGTTGCAAAAC
ACCTCATCCCTGATAGGGATTCAAGC	AACGGCGTGTCTTCAAAGGTAAAGGTTTGGCTTTGGCCGTTGCAAAAC
ACCTCATCCCTGATAGGGATTCAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012407386.1\|720313_722614_+\|family-10-glycosylhydrolase	unknown	unknown	gnl\|CDD\|224563
NC_010628.1\|WP_012407390.1\|727417_728587_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223959
NC_010628.1\|WP_148220402.1\|713544_714201_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_010628.1\|WP_012407395.1\|733592_734384_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_010628.1\|WP_041565877.1\|718362_719895_-\|DUF1565-domain-containing-protein	unknown	unknown	gnl\|CDD\|284923
NC_010628.1\|WP_012407389.1\|724966_727135_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|237425
NC_010628.1\|WP_193372272.1\|724446_724683_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_052304553.1\|709719_710022_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565875.1\|715354_717430_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_010628.1\|WP_041565879.1\|722806_723682_-\|phosphodiester-glycosidase-family-protein	unknown	unknown	gnl\|CDD\|378342
NC_010628.1\|WP_012407384.1\|717448_718231_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_052304554.1\|711364_713440_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|227922
NC_010628.1\|WP_012407394.1\|732753_733260_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407382.1\|714604_714865_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407392.1\|730324_730924_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	unknown	unknown	gnl\|CDD\|235534
NC_010628.1\|WP_012407397.1\|734745_734967_-\|ferredoxin-thioredoxin-reductase-variable-chain	unknown	unknown	gnl\|CDD\|367263
NC_010628.1\|WP_012407396.1\|734518_734740_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407391.1\|728895_730239_+\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NC_010628.1\|WP_012407393.1\|731007_732537_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|225098
NC_010628.1\|WP_052304552.1\|708865_709681_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012407386.1\|720313_722614_+\|family-10-glycosylhydrolase	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	3.90109e-150
NC_010628.1\|WP_012407390.1\|727417_728587_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223959	COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only].	3.3783e-13
NC_010628.1\|WP_148220402.1\|713544_714201_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	5.5296e-21
NC_010628.1\|WP_041565877.1\|718362_719895_-\|DUF1565-domain-containing-protein	gnl\|CDD\|284923	pfam07602, DUF1565, Protein of unknown function (DUF1565). These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterized domains such as pfam00395 and pfam03422.	1.55277e-51
NC_010628.1\|WP_012407389.1\|724966_727135_-\|PAS-domain-S-box-protein	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	1.06774e-60
NC_010628.1\|WP_041565875.1\|715354_717430_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.13916e-19
NC_010628.1\|WP_041565879.1\|722806_723682_-\|phosphodiester-glycosidase-family-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	7.15187e-29
NC_010628.1\|WP_052304554.1\|711364_713440_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	1.28081e-17
NC_010628.1\|WP_012407392.1\|730324_730924_+\|50S-ribosomal-protein-L25/general-stress-protein-Ctc	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	1.22899e-61
NC_010628.1\|WP_012407395.1\|733592_734384_+\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	1.75422e-43
NC_010628.1\|WP_012407391.1\|728895_730239_+\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NC_010628.1\|WP_012407393.1\|731007_732537_+\|AAA-family-ATPase	gnl\|CDD\|225098	COG2187, COG2187, Uncharacterized protein conserved in bacteria [Function unknown].	3.16815e-178
NC_010628.1\|WP_012407397.1\|734745_734967_-\|ferredoxin-thioredoxin-reductase-variable-chain	gnl\|CDD\|367263	pfam02941, FeThRed_A, Ferredoxin thioredoxin reductase variable alpha chain.	1.11389e-39

>NC_010628.1|WP_041565879.1|722806_723682_-|phosphodiester-glycosidase-family-protein
MRKIKLPTLILISLAMVLWLNLRSSTQSISTVVSSPPKSIRYFERTLPQSIAHVLFIPVNSKFLVTPALSQKVATVEEFAQKHRAVAILNAGFFDPANQKTTSYVILQRKLVADPKENERLVNNPNLKSYLSQIFNRTEFRRYSCGQTVRYDIVLHSASQPAGCQLVDAIGAGPSLLPELTLEKEGFVDNANKRDALGSNQPNARTAVGITHDGSVVLVMVAQKPSAPANGISLPALANFMKTLGADKAMNLDGGSSSSLYYNGKTFYGKVDLEGNPIKRPVKSVLLVQEN
>NC_010628.1|WP_012407386.1|720313_722614_+|family-10-glycosylhydrolase
MTTQFWEKSIGINATLTNLLLNPVRRCLLLCRSKLRKASDGVAASRQTSPFIHQGWWLLRKRLLPLLFLISFVAVLLLNSFAPAIAQLPPQPRQEIRGVWLSSNDFSVFRNRSKVQAAMSQLRQLNFNTVYPVVWNDGYTHYPSAIMQKMGIPFFFKGVDGQDVIADIISQAHSQGLLAIPWFEFGFMVPLSSELASQHPDWLTQMRDGTQTSTNAAAEVAWLNPFHPEVQKFITELVMEVITQYDADGIQFDDHTGLPVDFGYDKYTISLYTQETGNPPPPNPQAQAWIKWRADKITAFMVDLYQTVKSRKPNAIFSVAPDYYNFAYKLYLQDWLNWVRLGIVDELVMQVYRKDLESFITQITRPEILETQQIIPTGIGITAGLRNSPVALPQIQSQVQAAQQRGLGISFFYYESLWDIAPEPAAQRQSAFAALFPNPALRDISQNPPRKPTFDTISLPLYTKPSLGQRVRGYFLEMAIANGQPKRILLDTGSAGLRVPKEFLGNAPIRRTGQNIKEILSDGTILEGELVYTNIRFGLLPATEPVPVQVVTSRQCTAQKPNCSAKNGVPFSGIIGVNYFEKSLPYNPLRKLPGNLSNGFIVTGNGGNNNNGSLILGLTADNQAGFKMAPWNKQSKINDVPGNRWDSQVSKVCLTIAGSSAKNLCNGKMIADTGTINGLTEFKSASTAGKLKPGVLRSANAVKVAINGIFDYSLTPGTRDGFNRWNLSISPQSEVPTFVNTGIAFFDKYDVLFDQVNGRQGFRSRR
>NC_010628.1|WP_041565877.1|718362_719895_-|DUF1565-domain-containing-protein
MVNSTLVVTLYINPMKGNDTNTGSRLSPFKSLTRALKITKIPTIIHLEPGTYSAASGEVFPLIIPEGATVMGNEVNKGADIVICGSGEYQSPSFGIQNITLLLLDDASLLGVTVTNPSAKGTGIWIESAAPTLANNTLRDCGREGVFVTGAAKPEILDNIFVQNTASGLVIAGHSQGEVLWNLFERNPLGIAISDFATPTIANNKLSENRTAIALSRNAQPVLRQNLITKNTQGGLLVNGNAIPDLGNTQDSADNIFRDNSEFDLYNATKQKLISVGNHLNPFLVKGLAELIPANPVAVSTNLSDAPAPAPSQKLPAPVQLDAHWAEPFIQALVSMDLTHRFADGSYQPDQPMTRAQYASLVAIAFNPFPKISAPDFTDVPKDFWAYSAIQVAASGGFVGGFSDRTFRPNQHVQRLQVIVSLVNGLGLAAIDSDILEIYSDRHTIPDYARKAVATATQQKIIVNYPDPQLLAPLRLATRGEVAAMVYQALVAIGRTSAIKSFYVGLHSRS
>NC_010628.1|WP_012407384.1|717448_718231_-|hypothetical-protein
MLTTLPDTSANLAIALLINYSFDLSGYTANELVERWQTQYPLNWLHLAVIEALYQGRYKAVSVQQILVFWQRRDQATYHFNMEFERMICSKFPQSLTSSPAPSLPLVKRNPIVERVTSPQLPPAKIRNGYQNSNTATLQLKSYEQKTSLDEEEAKQEARDNKTVLKSPLSGKFASSATLQLSSAVSQRQTLQESSPPPSPPSHHQRQPKLLPPAAIHAPIGQFTPEKSDRSESFTSKLKAMSSEPNPPDMGSGEMREKNQ
>NC_010628.1|WP_041565875.1|715354_717430_+|tetratricopeptide-repeat-protein
MKSKNQAVFALIVKSTIVFLPLLLSVGIANGQSAPSLSPALTQISVLSNQEREELARLRAEKRIQQQVQSDFNSAFSRTTILLNVWLVILSLFPVAIIALFWLLRRVVIREIVDRAMQQLQGMEKLQNQLATVKQEAENVIQDAKKINDELERETVSLQQKIKSEQENFSTLTSELDLAKSQVLSRLESQLKKSQENIESLESHFATVVSKLELDAQQQTDVALENLGNLASVLTQELSNLKLGVQQQQELAVADLQVSRSEFISQLSGWQSDAQKQKDIVFEKLAKLQSEFANQLSELQVDTHDKKENAFESLGKLDNELKSQLSELQADAQEQKNKIVESLAALQSEFAEQLSELQLDAQKRKVLIIENLEKSASEFSSQFSELQWNAQQQKIIILEKLERLETEFVSQLSELQLDAEERKDLILQELTEITPESILEAVNYEVKEEKEVEEPPQQPELTAEEYVKEGDELFSKRRYEDAIAAYNQAVKIQPDEPVAWLKRGLTLGRLKRYKDAIASYERAIQIQPDYHQAWCDRGVAFGKLQQHQQAFASFEKATQIKPDDAVAWLNCGLSLVALEKYEEAIVSFDKALEFQPNSPKIWDKRGYTLVRLGRDDEAIASFNKTLEIKPDYASAYYNKAACYALQRQVELSLATLKQAIELDPRYKEDAATDLDFDDIADDERFKQLVTA
>NC_010628.1|WP_012407382.1|714604_714865_-|hypothetical-protein
MGRLNPYTLQLQITRMFEQGQSFFATTKVQEWLKERKHNPEDYDILFHKKPAPPGSKEVMVVEIELRRKDGQPVDPWLQEQANLHA
>NC_010628.1|WP_148220402.1|713544_714201_-|class-I-SAM-dependent-methyltransferase
MTVNQIIGDSQNQINANFGKRFFAWIMAQSSSTYNKIVSDRKRSLFANLQGKVLEIGPGTGPNLPYYPKDIHWIGIEPNPHMHSYLQKQAKKLGLNIDLRIGNAEWLDAEDNSIDTVVSTLVLCSVPNIDYTLQAILRVLKPGGRFLFIEHVAAPQGTVLRQVQSAIRPTWQVIGDGCHPDRETLIALENAGFASINYERFDAQLPIVSPHIIGVATN
>NC_010628.1|WP_052304554.1|711364_713440_+|pentapeptide-repeat-containing-protein
MTLHYAWTVLQRYRDAKDRKSERPRIPLVIPLRDYAKAVSVESLFSEFFFRKYEIPILGYSVFEQLNRMGKLLLIFDGFDEMADRVDNQKMINNFWELARVVVPGSKAILTCRTEHFPEAKDGRALLNAELEASTSALTGEPPQFEVLELEKFSDDQIRQVLSFRAGVSTVEQIMENPQLLDLARRPVMTELILEALPDIEAGNPVDMSRIYLYAVRNKMERDIKAERTFTSLADKLYFLCELSWEMLSTDQMSLNYRLFPDRIRRLFGHAVQEEKYLDHWHFDMMGQTMLIRNADGDYSPAHRSLLEFFVAYKFAAELGVIAPDFADLAKAQSHLNESVSSDYTWSSYFRRECDENGNIKPILYLQEFIPEKIEVLAETVGKETLNTDFISENISKVLNRKQNNAIFELIGNMISPEKEKVKTRLFTIITETCGKTLQEVGIVGGNVATILVQYDPISLRGQNLAGANLRYANFSGANLTECNLDNADLSNTRFSSKSIMLHATLRNSNLNHLRLGDLLIGWISKVPLNKTPSLLTNWNSEIPAIFFYYPHEGNHSNRPNLPFKVKQNEIVVAYGENRLLKWNYIIKSVYILNEEINQGVLKILTVEGEDVYLELKTGLNLPADEATSVLRSWRSADFTGAMGLGEREVYILKILGAISLPNTSYNPHNDKNLNFGLKHNEGEYDFEELL
>NC_010628.1|WP_052304553.1|709719_710022_+|hypothetical-protein
MKKEENQDIFCYTFDELLDEQADFSKYLDWLEAEVKRKGIDRMYVPLACIKEEYDPVTQEKLGVSRYNADDGWIEGYIDHWLNDRAKEHISILGSYVKIN
>NC_010628.1|WP_052304552.1|708865_709681_+|hypothetical-protein
MVIDLLGKAIQAIAGAGVPSIKNKLERSEIVSKLLKQLDLYPEHPPADFSGVYVYTVVQYGVGKPHEILELFRQEEIKQAFREAFEQNDPLIFIKKGQDFIDGYALGDEIKKLGIDPLPEYAAFAMAFIEVANSTRKPSEVLRDRKLETINQNISIIQEQLSRLKEPKEILLELAIQSRTYQELQPADESKNERIGIFILAQQMSGWFETLGYKFDRHKVEEEKFFEWIINIPARRGYDRIFVRGVEREGGLSDVQSLRKAVMSIRQKKLG
>NC_010628.1|WP_193372272.1|724446_724683_+|hypothetical-protein
MRAITYSMDLLLPGLYIWLFGFSFRLGGNIPDDIPYKYPGKIHSNTGIALVLPGYRIFTTYQGSYDPKQTSNTGASSF
>NC_010628.1|WP_012407389.1|724966_727135_-|PAS-domain-S-box-protein
MVKKWYRVQKLKAIFVLALAVVFTNAVVSYNNTVKLIHNQQWVTSSYKVITQLESIQSLLKDTETAQRNYLITADADDLKTYLAAYQQTNRNIQILRKLTADNHQKQQWISLLEPKITSRLNILQKEIYLRQNQGFEAVRQRILSDKDNQSGKEIQQLIHDSLEIEQNLLQQGMQQSQASSQKAIVTFFIAAIVDLVLVALLYDLLWRYIRQLQQTELALRQSENRLRAMIDAEPECIKLIARDGTLLEINAEGLAMMEVESPDVLIGKPIDAVIVPEYRAAFADLHKSICQGNKGTLEFEIVGFKGTRRYMETYAVPLRNESDGTFIHLALMRDITQQKQAEQKIREQGLLLDVSTEGILVRNIYNQILFWNQGAERLYGWKSEEVVGKNVLQLLYKGISPQLEDAYLKVMNTGEWRGELHQLTKEGKVIIVESRWILIRDDRGQTKSILSVNTEITQQKQLEAQLLRSQRLESIGTLAGGIVHDLNNILSPILMSVQLLQKKLPDSQSQQILQTLENNVKRGANLLKQVLSFARGIEGKRTIVQIQPLMAEIEQIIAQTFPKSIICQADIPKNLWYVRGDITQIHQVLINLVVNARDAMPNGGILRIAAENLVIGEHSAQINIDAKVGSYVAIVVTDTGMGMSSEVQKRIFEPFFTTKEVGKGTGLGLSTALGIIKNHGGFVNVYSHVGRGTQFTVYLPASTFRDTSLLSPELESVTGDG
>NC_010628.1|WP_012407390.1|727417_728587_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTKLPRCIVCKTTFLQGHGFYTGLCVECGNLNFSKRQQSADLRGMIAVVTGARVKIGHGVALRLLRDGATVIVTSRFPHDAAKRYAAEPDFREWQHRLQIYGLDLRHLHSVEQFTQHICKFYQRLDIIINNAAQTVRRPPAFYHHLIEFESLPFGELPPEIQVLVGHNHAVNTENSALLASTEEKEATFTKNSAFLSQIPLIPEDIGDNSAYFPLEGYTDDEQQLDLRPFNSWLMKDDEVSILELLEVHIINAIAPFVINSRLKRLMSNYKETNKYIINVSSMEGRFNDVDKPWRHPHTNMAKAALNQMTRTCAKEYAKHRIFMNAVDPGWISFQHPYHQAKSMQERGVYPPFDVNDAAARICDPIYLGINQGKTPFARLFKDYTEIDW
>NC_010628.1|WP_012407391.1|728895_730239_+|adenylosuccinate-synthase
MANVIVIGAQWGDEGKGKITDLLSRSADVVVRYQGGVNAGHTIVVKGQTFKLHLIPSGILYPNTDCIIGCGTVIDPQILIAEIDQLKELNISTDHLLISETAHVTMPYHRLIDQASEERRGSYKIGTTGRGIGPTYADKSERTGIRVLDLMDPDGLREQLEWTINYKNVILEKLYNLPPLDPQEVIEQYLGYAERLRPHVVDTSLKISDAIQRRRNILFEGAQGTLLDLDHGTYPYVTSSNPVAGGACVGTGVGPTMIDRVIGVSKAYTTRVGEGPFPTELDGELGELLCDRGAEFGTTTGRKRRCGWFDAVIGRYAVRINGMDCMALTKLDVLDELEEIQVCVAYDIDGQRSEHFPTSSRQFARCRPIYKTLPGWKVSTTECRTLEDLPQQALDYLKFLAELMEVPIAIVSLGASRDQTIIVEDPIHGPKRALLHPDGTPATLLSA
>NC_010628.1|WP_012407392.1|730324_730924_+|50S-ribosomal-protein-L25/general-stress-protein-Ctc
MTITVESLKRPEGSKPRALRRSGLIPANLYGHKGTESISLTIEAKTVERLLKRVSVNNTLIELNIADAPWRGKALLRELQIHPAKGTPYHLSFFAVAGHGDTTVEVRLRFVGTAVGVKQEGGVLDTVITELQVSCAPENIPDVIEIDVTNLQIGDSLSISDIPFPEGVTPLAELERLVVSVLPPQISADDAGTETETAS
>NC_010628.1|WP_012407393.1|731007_732537_+|AAA-family-ATPase
MTEATLPVLIEQMLQPGFYPHAVTEPIELIQTHVSYVLLTGDYAYKLKKPVNFGFLDFSTLEKRQHFCHEELRLNQRGAGELYLEVLPITLVGEQYQLGGTVEAVEYVLKMRQFPQESLLSTLFEQGKLNEARLDELGRVVAQYHAEAQTNDYIRSFGEVPKVRAAFDENYQQTENYIGGPQTQEQFTETKQYTDKFFAERPELFASRIHNNYIRECHGDLHLRNIALWNDKILLFDCIEFNEPFRFVDVMYDVAFTVMDLEARQRKDLGNAFLNAYIEQTGDWEGLQVLPLYLSRQAYVRAKVTSFLLDDPGVPAAVKEEATKTASEYYKQAWEYTKPKVGELILMSGLSGSGKSTTARHLARQQGAIHLRSDAVRKHLGGIPLWEKGGDDLYTPEMTEKTYTRLLELGIILAKQGFSVILDAKYDKQHLRQEAIAQATKHEIPLQIIQCTAPLEVLKERLNNRTGDIADATADLLASQIKQAEPFTEEEQAYVKILDTTQSQKAQLK
>NC_010628.1|WP_012407394.1|732753_733260_+|hypothetical-protein
MADKKNDFLSISPSFFSQLLFGAFLTFILIMTGSAPALSIFLGIMGGFILSWITNVTDNSPQAPNVASSDGVDTGLKYWLFFMLGFVYLGYPAPTSILLGGIGALAGGWITAWWGSKEETRTQLQVEELEEGEVEPTNDRINKRQTRRNTRRYRRAPGSSINFKFWER
>NC_010628.1|WP_012407395.1|733592_734384_+|YdcF-family-protein
MFLYLSKLLPLFFYPLGLACVSLVVALVTLWKRPRTAAIAIAFALTLLLFCSNAWIAKSLVRSLEWQNLPLAQIPVAEAIVVLGGATKSAFPPRPTVDLSESGDRVIYAAQLYRQKRAPIIILSGGRIDWRGGGSPESADMATILTSIGIPSEAIVQEPESLNTYQNAVNVRKILESRGINQVLLVTSAMHMPRSLNIFQRQGINVIPAPTDFLVSQGELQELGGTPKAAILNLLPDTDNLHQFTSALKEYIGSLIYRLRGWL
>NC_010628.1|WP_012407396.1|734518_734740_+|hypothetical-protein
MSKNLPYIMPSPQPQVEEAFAAYQTTHQFYHEVRSRSEFQRYCEWYYATAEQNRQELKRMRGELNIFQWFRRR
>NC_010628.1|WP_012407397.1|734745_734967_-|ferredoxin-thioredoxin-reductase-variable-chain
MKVGDRVRVKDSVVVYHHPEHRNQAFDIKGIEGDVVNIATQWQGRPVSANLPVVVQFSKKFKAHLRENELEVI

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Crispr_ID: NC_010628_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_4

1030435-1030529

Orphan

Consensus_repeat	Method
CAATCAAATAATAACTTTCCCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_4

>merge|NC_010628|4|1030435-1030529|CRISPRCasFinder
CAATCAAATAATAACTTTCCCCATTTCCCACTCCCTCATAGGAAGTAAAGAATAGGAATAGTTAGTAAAAAACAATCAATTAATAACTTTCCCCA

>NC_010628|4|4|1030435-1030529|CRISPRCasFinder
CAATCAAATAATAACTTTCCCCA	TTTCCCACTCCCTCATAGGAAGTAAAGAATAGGAATAGTTAGTAAAAAA
CAATCAATTAATAACTTTCCCCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_041565191.1\|1029726_1030089_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407625.1\|1019698_1020481_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|275293
NC_010628.1\|WP_012407640.1\|1039028_1040528_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235998
NC_010628.1\|WP_012407635.1\|1030537_1030987_-\|anti-sigma-regulatory-factor	unknown	unknown	gnl\|CDD\|225083
NC_010628.1\|WP_012407629.1\|1023860_1024325_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|215641
NC_010628.1\|WP_012407626.1\|1020881_1021727_-\|TIGR00297-family-protein	unknown	unknown	gnl\|CDD\|224749
NC_010628.1\|WP_012407631.1\|1025185_1025956_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_148220245.1\|1033983_1035984_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407632.1\|1025952_1027674_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_010628.1\|WP_012407633.1\|1028332_1029724_-\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NC_010628.1\|WP_012407639.1\|1036488_1038855_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NC_010628.1\|WP_012407637.1\|1032959_1033445_+\|allophycocyanin-subunit-alpha	unknown	unknown	gnl\|CDD\|381265
NC_010628.1\|WP_012407644.1\|1043134_1043761_+\|DUF3038-domain-containing-protein	unknown	unknown	gnl\|CDD\|371430
NC_010628.1\|WP_012407641.1\|1040712_1040994_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407627.1\|1022335_1022767_+\|glyoxalase	unknown	unknown	gnl\|CDD\|226095
NC_010628.1\|WP_012407642.1\|1041045_1042092_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_010628.1\|WP_012407643.1\|1042165_1042684_-\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NC_010628.1\|WP_012407636.1\|1031378_1032785_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|129571
NC_010628.1\|WP_041565907.1\|1030133_1030409_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407628.1\|1022826_1023459_-\|triacylglycerol-lipase	unknown	unknown	gnl\|CDD\|224001

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012407625.1\|1019698_1020481_-\|peptidylprolyl-isomerase	gnl\|CDD\|275293	TIGR04500, PpiC_rel_mature, putative peptide maturation system protein. Members of this protein family have a novel N-terminal sequence region. Close homologs to the C-terminal region of this protein score well to PpiC-type peptidyl-prolyl cis-trans isomerase models (see pfam00639), yet no sequence within the family scores well to such models, suggesting origin within a branch of the PpiC family but subsequent neofunctionalization with a rapid change of sequence. The genome context for members always includes an ATP-grasp enzyme associated with peptide modification and a short polypeptide likely to be the modification target.	5.01906e-08
NC_010628.1\|WP_012407640.1\|1039028_1040528_+\|amidophosphoribosyltransferase	gnl\|CDD\|235998	PRK07349, PRK07349, amidophosphoribosyltransferase; Provisional.	0
NC_010628.1\|WP_012407635.1\|1030537_1030987_-\|anti-sigma-regulatory-factor	gnl\|CDD\|225083	COG2172, RsbW, Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms].	2.31671e-35
NC_010628.1\|WP_012407629.1\|1023860_1024325_+\|hypothetical-protein	gnl\|CDD\|215641	PLN03237, PLN03237, DNA topoisomerase 2; Provisional.	0.00203989
NC_010628.1\|WP_012407626.1\|1020881_1021727_-\|TIGR00297-family-protein	gnl\|CDD\|224749	COG1836, COG1836, Predicted membrane protein [Function unknown].	3.56908e-75
NC_010628.1\|WP_012407644.1\|1043134_1043761_+\|DUF3038-domain-containing-protein	gnl\|CDD\|371430	pfam11237, DUF3038, Protein of unknown function (DUF3038). This family of proteins with unknown function appear to be restricted to Cyanobacteria.	2.13809e-89
NC_010628.1\|WP_012407632.1\|1025952_1027674_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	4.8667e-54
NC_010628.1\|WP_012407633.1\|1028332_1029724_-\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NC_010628.1\|WP_012407639.1\|1036488_1038855_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NC_010628.1\|WP_012407637.1\|1032959_1033445_+\|allophycocyanin-subunit-alpha	gnl\|CDD\|381265	cd12125, APC_alpha, Allophycocyanin alpha subunit of the phycobilisome core. Phycobilisomes (PBSs) are the main light-harvesting complex in cyanobacteria and red algae. In general, they consist of a central core and surrounding rods and function to harvest and channel light energy toward the photosynthetic reaction centers within the membrane. They are comprised of phycobiliproteins/chromophorylated proteins (PBPs) maintained together by linker polypeptides. PBPs have different numbers of chromophores, and the basic monomer component (alpha/beta heterodimers) can further oligomerize to ring-shaped trimers (heterohexamers) and hexamers (heterododecamers). Stacked PBP hexamers form both the core and the rods of the PBS; the core is mainly made up by allophycocyanin (APC) while the rods can be composed of the PBPs phycoerythrin (PE), phycocyanin (PC) and phycoerythrocyanin (PEC).	5.06924e-104
NC_010628.1\|WP_012407642.1\|1041045_1042092_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.79016e-118
NC_010628.1\|WP_012407627.1\|1022335_1022767_+\|glyoxalase	gnl\|CDD\|226095	COG3565, COG3565, Predicted dioxygenase of extradiol dioxygenase family [General function prediction only].	3.10883e-42
NC_010628.1\|WP_012407643.1\|1042165_1042684_-\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	1.66613e-97
NC_010628.1\|WP_012407636.1\|1031378_1032785_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|129571	TIGR00479, 23S_rRNA_uracil1939-C5-methyltransferase_RlmD, 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. [Protein synthesis, tRNA and rRNA base modification].	1.31015e-172
NC_010628.1\|WP_012407628.1\|1022826_1023459_-\|triacylglycerol-lipase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	7.91538e-35

>NC_010628.1|WP_041565907.1|1030133_1030409_+|hypothetical-protein
MSQSTQLPKTSQLNELSTLELAQALMERLSISPNDWHRLKSNRNSRANEQVAAAIVYLLKNQPQEAQARLEQAIGWLDRSISAPPCPTHGK
>NC_010628.1|WP_041565191.1|1029726_1030089_-|hypothetical-protein
MKPPKQSQPSAENPEPDFEQELEEVERSLLSLKERYDQVQRDRQQQAQWQQRRDQLKHNKSQTPEIKAELRQIQQQLEMLELNLESQLFSWRSLKKPFWQAVRFGGMGVIIGWILKSCAG
>NC_010628.1|WP_012407633.1|1028332_1029724_-|asparagine--tRNA-ligase
MVNRRIAEILRSGQPDESFQVQGWVRTKRESKGFAFIEVNDGSSLANLQVVINQDLPDYEAILKKLNTGAAVEATGVLVASLGKGQRIELKAESVKVYGEADPDTYPLQKKRHSFEFLRTIGHLRSRTNSFGAVFRVRNACSTAIHQFFQQRGFLWVHTPIITASDCEGAGELFSVTSLDLKNIPRTENQAVDYSQDFFAKPTYLTVSGQLEAEVMAMAFSNVYTFGPTFRAENSNTSRHLAEFWMVEPEMAFCDLEGDMDLAEAFLKHIFKYVLETCPEDMEFFNERIDKSVLATAENIINNQFERLTYTEAIKVLEKADVKFEYPVSWGLDLQSEHERYLAEQQFKKPVIVTDYPAQIKAFYMRLNDDEKTVRAMDILAPKIGEIVGGSQREERLEVLERRVLAQGLKPEELWWYLDLRRYGTVPHAGFGLGFERLVQFMTGMGNIRDVIPFPRTPQSAEF
>NC_010628.1|WP_012407632.1|1025952_1027674_-|protein-kinase
MTYCINPHCPKPVDPVNANNLICRNCGSEILLQGRYRVIKQLGQGGFGNTFEVEECGKTKVLKVLTDNNPKAIELFQQEARVLSQLNSAGIPKVEPDGYFTVLPKNSSLPLHCLAMEKIEGVNLEQWMEFRNYQRISEAQALNWLKQLVEILALVHAHQYFHRDIKPQNIMLQPNGQLVLIDFGAVRQVTTTILAGNSHTRIISQGYSPPEQQNGYSVQQSDFFALGRTFIFLLTGKEPQDQSIYDPLTNELHWRKSALNLSPLLADLIDHLMAPTVNQRPENTQVILQKLSEIEKALQMPRILWQQTTIQSNNGSKSAASSSSVATVSFGGAKSVNTLSSQTPKSQKLWQVFIGLGVGCFAVFTAALNLPNNKNPVSVSPEGNIPVAIPSSVPSPVTKVYEIPTNAQPQPTISPLTLPTSDKLEIEQAQIEEIEKEKLQAILKAEQERQAAIKKEAAATAETEQLEAVIRENEHQDALVAQKRQQADKDRQTKIKLEKAKQVYLQIKQRPKTTVITSNTRKLTPKQEVPKKQPKNAIGTKNDGANIPNPWESTYPIPKASDELEQVIREGNK
>NC_010628.1|WP_012407631.1|1025185_1025956_-|hypothetical-protein
MMNFTFKSLIALVVTSSALLLTPMRSDAQVNMNILAKVAQSCQRDALSPEYYQQMDIDLTEQHYFGKKKAFMNPCIRTRYHYFSVLSKLPWMASKGEMLPNYPGYIAILATAMNFAEQKRPNNLIECIASQNALSQPCQQTNFYIAETSIKIKKIDIGSVGDESNYLTYVCPSCAVTHDNIFSKEIIISAFIKWFLELEKPQRREIMSILGADEKADKLRDEIHYESLGAVGEYWDIYAQVEKQEQEQRRQELLGN
>NC_010628.1|WP_012407629.1|1023860_1024325_+|hypothetical-protein
MDFIKKLISGILGFVTGILGFVTGLLPGKKQSNGYFLELDEATSQSKPAASNGKKAAAPAVSSAAKSPEPQTAKATTAATQTKVEASQNGKAVKAEPAKAVATASPKTPAETTFAPKYLAPSTTSSNGRRRPGANMSAYLDMARQVKTPNTSNN
>NC_010628.1|WP_012407628.1|1022826_1023459_-|triacylglycerol-lipase
MNTENQQRNPVLLVHGIDDRGAVFHKMTGYLGLQGWSVYSLDLVPNNGDVGLDKLAKQVADYVTATFAPEQELDLIGFSMGGIVSRYYIQRLGGINRIQRFITISSPHHGTVVAYGSQRPGCIQMRPDSIFLKDLNSDAVILEQLDFTSIWTPYDLMIVPANSSQMPVGSEVIVPVALHPWMLTDPRSLAAVKAALTEPIKLPFLKKASS
>NC_010628.1|WP_012407627.1|1022335_1022767_+|glyoxalase
MSQTLFHLAFPVTDIAQTKAYYVDGLGCIPGRENHHALILNLYGHQLVAHVTKEPLIPQQTIYPRHFGLIFTQERDWQDLLERAQQKQLLFREETKNRFVGSPLEHRTFFLEDPFYNLMEFKYYRHPEAIFGSYEHMQIGDRT
>NC_010628.1|WP_012407626.1|1020881_1021727_-|TIGR00297-family-protein
MSSLIDSVNPWLVAVVLNTILLGLAWIAPKKLLTPAGSFHAWFLAILIWVTLGWQGYTVVMFYFLVGSGVTRIGMAQKEAEGIAEKRSGARGPENVWGSALTGALCALGVGIINSGFILPSSQYFDFAQYKSLVPNTPAALSTSLQSLLLLGYVASFSTKLADTTASEVGKAYGKSTFLITTLKPVPRGTEGAVSLEGTLAGIVASVAIAFVGWGVGLIDLLGVAWCVLAAFIATNLESVIGATLQSKYTWLTNEVVNIFNTLIGAIAAVLLSWTWINIIK
>NC_010628.1|WP_012407625.1|1019698_1020481_-|peptidylprolyl-isomerase
MESLSFLTINDQIISIEEAVKYLQASGKLGQFIGDILRQHVIEEEIRTRDDIEIGTAITEQAIIDFRLKNQLTDPQSFQEWLKTNNTDYATFHTSVTFGYKLEKLKAVVTEPKIQEYFIERKIFLDRIVLSRIVVNNRELADELQTQIEEGGSFEQLAKEYSLSDDRIVNGMMGIVSRGSMPDILRAAIDVASPGQLIGPIEIVGKDSPQGEGPYGLFRVEQFLPASLEDTQLKQALQNELFEKWLAEKIQKLTVKLQVS
>NC_010628.1|WP_012407635.1|1030537_1030987_-|anti-sigma-regulatory-factor
MITISLRPVARYWGTISFASTLYLCPILDLLLAEIPAKLQAELRLGLQEALVNAAKHGNNLDPSKTVVVRFSLIDNQYWWIISDQGSGFTPSSTIEEEPTDYLPPDESESGRGLCLLHQIFDQVEWNRKGTELRLCKQMETRRGLSLRR
>NC_010628.1|WP_012407636.1|1031378_1032785_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MTKIIWQQGELIEVTIANLSDTGDGVGRADERVVFVPDTVPGDRAIVRLVHVKPKYAHGKLQELLEPSSHRIRPNCIVADKCGGCQWQHINYDYQLVAKQNQVIQAMERIGGFVQPPVNPVLAAPSALGYRNKSTYPLGTSATGQVQAGYYQKGSHQLINLNQCPVQDARLNPLLAEVKQDIQRQGWQIYDEQRHQGKIRHLGLRIGRHTGEMLLTLVVKDWNLSGIETQAQEWLKRYPQLVGVSLNRNSDRTNAIFGSEIRCIAGVPHLRENFAGLEFQVRPDTFFQVYTETAEALLQVIQSELNLQGHELLVDAYCGIGTLTLPLAKKVRIATGLEVQPAAVEQALLNAHCNGIDNVTFLVGAVEKLLPKMGTIPEVVILDPPRKGCDRAVIDTLRQLKPSRIVYVSCKVATLARDLKLLCQDGQYTITRVQPADFFPQTAHVEAAAFLVLSDLHKDSNSFKKTEI
>NC_010628.1|WP_012407637.1|1032959_1033445_+|allophycocyanin-subunit-alpha
MTVISQVILKADDELRYPSSGELKNIKDFLQTGVQRTRIAATLAENEKKIVQEATKQLWQKRPDFISPGGNAYGERQRSLCIRDFGWYLRLITYGVLAGDKEPIEKIGLIGVREMYNSLGVPVPGMVEAINSLKTASLGLLSAEDAAEAAPYFDYIIQAMS
>NC_010628.1|WP_148220245.1|1033983_1035984_-|hypothetical-protein
MPRLTVPPNFIGTPGSDTLIGEQLNASPAIGIDILTGGFICTRSGNDTVKGTGTGRIGGIGGSIEGGNANGIANRGNLNTGNGKDAIAGIGNGGNGADGNTDGSTANGNGGTGTGISNISKINGGNGNDTISGTGTGGNGGFGSFLGGKGGTGTGISNSSNINAGDGNDTLIGTGTGGNGANGVGRPGGGGQGGTGTGIANSGSINAGNGNDTIAGTGTGGNGGFGRVSGRSGDGTGISNSGQLHTGDGEDTIVGIGTGRQSGSGSLGGTPGGTGTGIANSGSINAGNGNDMIVGTGTGGIGGTGPNSGNGGIGIGIANSNSLNGGDGQDTIVGTAIGGIGAEGFPNTGDGGTATGIVNTGSLNGGNGKDTIAGIGTGGMGGDKFFFGEGGTGTGIVNSGSLNAGNENDTITGTGAGGNGGASIDGLTESAGGKGGTGIGIANTGKLDTENGEDTIIGTGIGGKGGIAPGGIGDVGTGTGIQNTKDGTITTEWGNDKITGDGNSSGTNSTAYGIVNDGIIDTGNGSDKLTGQATATIGGTAYGIYGEGIIKTGNGNDQIIATSILDGVQQKVTIGGGINIALGAGNDYLKGFGAATVDGGDGFDTLDLSAFNRSELFVSRVISGTTLNANITFNSNGNSISLSTTGFEKFIFADRSFCYSSLANEA
>NC_010628.1|WP_012407639.1|1036488_1038855_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MTATSPAFFSPQEIAAEGLKPEEYAEIVRRLGRHPNKAELGMFGVMWSEHCCYKNSRPLLKQFPTEGPRILVGPGENAGVVDLGDGLQLAFKIESHNHPSAVEPFQGAATGVGGILRDIFTMGARPIALLNSLRFGSLEDAKTQRLFQGVVAGISHYGNCVGVPTVGGEVYFDPAYSGNPLVNVMALGLMETQEIVKSGASGLGNPVLYVGSTTGRDGMGGASFASAELSDQSIDDRPAVQVGDPFLEKSLIEACLEAFKTGAVVAAQDMGAAGITCSTSEMAAKGGVGIELDLDKIPARETGMVPYEYLLSESQERMLFVAHKGREQELIDIFHRWGLQAVVAGTVIAEPIVRILFQGGVAAEIPAEALAENTPLYNRELLAEPPEYARQAWEWTPDSLPACTTAGIEIQGGQQSWNDILLTLLDTPTIASKNWVYRQYDHQVQNNTVILPGGADAAVIRLRPLEEIPNLKSKIPNLKLGVAATVDCNPRYVYLHPYEGAKAVVAEAARNLSCVGAEPLAVTDNLNFGSPEKPIGYWQLAEACRGLAEGCRELATPVTGGNVSLYNETLDSQGIPQPIYPTPVVGMVGLIPDITKICGQGWQASGDVIYLLGLPLASKISLGASEYLATIHNTVAGKPPLVDFDLERRVQKVCREGIRNGWIRSAHDSAEGGVAIALAECCIAGNLGAEINLEIAPMQNRVDEMLFAEGGARILVSVTSAQQAIWESYLQEHLGQQWQILGTVGNFETGLGVFTTDNQILIKVSIEDMSDRYSHAIARRIATNTAVS
>NC_010628.1|WP_012407640.1|1039028_1040528_+|amidophosphoribosyltransferase
MTSIHSVTSDEYPDPTNNPINSHENQPDKPEEACGVFGIYAPGENVAKLTYFGLYALQHRGQESAGIATFEGTQVHLHKDMGLVSQVFNETILDQLPGSLAVGHTRYSTTGSSRKVNAQPAVLETRLGSLALAHNGNLVNTVQLRQELLEKKYNLVTTTDSEMIAFAIAEAINAGADWLEGSIQAFHRCEGAFSLVIGTPNGVMGVRDTNGIRPLVIGTLAGNPVRYVLASETCGLDIIGAEYLRDVEPGELVWITEEGLASYHWSQQPQRKLCIFEMIYFARPDSIMHNESLYSYRMRLGHQLAKESCVDADIVFGVPDSGIPAAIGFSQASGVAYAEGLIKNRYVGRTFIQPTQTMRESGIRMKLNPLKDVLAGKRVIIVDDSIVRGTTSRKLVKTLREAGAVEVHMRISSPPVTHPCFYGIDTDSQDQLIAATKSVAEIAKQLEVDSLAYLSWEGMLEATREDTNSFCSACFTGDYPVAIPEQVKRSKLSLEKVVV
>NC_010628.1|WP_012407641.1|1040712_1040994_-|hypothetical-protein
MLSEVYYLVRSKTDGNYLIARPDTETSGYLLLFQENFDALSYLNTHAAEVANRFTVESIPRTQLGNLLKRWGFSGVGIVTDPLLPKVEFLQHS
>NC_010628.1|WP_012407642.1|1041045_1042092_-|ABC-transporter-permease
MTSTRISLETGRDWLIRLVTSETFIYVAKRVLQALLTLFLASALSFFIIQLAPGDYVDTLRQNPKISPERIEEIKRQFGLDKSWPEQFWLWLWRILTKGDFGTSFIYQRSVASLLWERVPATLLLAIASLIVTWAIAIPLGIFAAVNQNKLSDRLLQVISYAGQGFPSFITALALLVLAQITSPLFPVGSMTSINHSELTWFGKILDVGWHMILPTIALSITSFAGLQRITRGELLDVLRQDYIQTARAKGLPENRVIYVHALRNAVNPLITLLGFELAGLLNGAFIAEFFFNWPGLGRLTLQALQAQDLYLLMASLVMGAVLLIAGNLIADLMLKAADPRIRLENLN
>NC_010628.1|WP_012407643.1|1042165_1042684_-|adenine-phosphoribosyltransferase
MDLKSLVRDIPDFPKPGILFRDITTLLRDPEGLRYTIDFLTQKCKEAEIKPDYVIGIESRGFIFGSPLAYQLGAGFIPIRKRGKLPAAVHSIEYDLEYGTDCLEVHQDALRHSSRVLIVDDLIATGGTASATAKLVQKIGCELVGFGFIIELRDLEGRKYLPDVPIISLIEY
>NC_010628.1|WP_012407644.1|1043134_1043761_+|DUF3038-domain-containing-protein
MNVSASLTPFNSPTQDSLPMILDTLPDPAITSKTCPRRTRLQIDLILLAIEALELGGSEAILSFAQELDLKGIVKDRVNLWRMRSSNPLRRAHIRRPLTIMEAKALVVIACYIARRLTVVIRQLLMICQQMEEKQIPLEQNLRLSNYLERFRAHFKSRMNARRSGVLALTSDEKLDELAINLLGQLLFCTGTAGMQRFWISLFDGEVE

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Crispr_ID: NC_010628_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_5

1228880-1229486

Orphan

I-D,II-B

Consensus_repeat	Method
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	CRISPRCasFinder
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	CRT
ATTGCAATTTATCAAAATCCCTATTAGGG----------ATTGAAAC	PILER-CR

8 spacers

The CRISPR arrays of NC_010628_5

>merge|NC_010628|5|1228880-1229486|CRISPRCasFinder,CRT,PILER-CR
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAACAATCTTTTTTGCTGATTATATCAAATCATTAGATGATTGCAATTTATCAAAATCCCTATTAGGGATTGAAACTTTACATGTACCCTAGTTGATACACCGTCCACATATTGCAATTTATCAAAATCCCTATTAGGGATTGAAACCTTACCGCACTTGATTGGGTATACAAAGCCAATATTGCAATTTATCAAAATCCCTATTAGGGATTGAAACTCTATTATGTATACTTCTGCCCGGACTACGAGAATTGCAATTTATCAAAATCCCTATTAGGGATTGAAACCTAGGGCTTTTTAGTGACTTTCTAAATCTAAAAGATTGCAATTTATCAAAATCCCTATTAGGGATTGAAACATATTGGGAACCCATACACCATCTGTCTTAGGTTATTGCAATTTATCAAAATCCCTATTAGGGATTGAAACTACTGCCGCCACTGCCTCAGAAACAATTTTAGGATTATTGCAATTTATCAAAATCCCTATTAGGGATTGAAACTCCGTATTTTTTCCCGATATGGCCCCTGGTTGCAAATTGCAATTTATCAAAATCCCTATTAGGAATTGAAAC

>NC_010628|5|5|1228880-1229486|CRISPRCasFinder
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	AATCTTTTTTGCTGATTATATCAAATCATTAGATG
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	TTTACATGTACCCTAGTTGATACACCGTCCACAT
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	CTTACCGCACTTGATTGGGTATACAAAGCCAAT
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	TCTATTATGTATACTTCTGCCCGGACTACGAGA
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	CTAGGGCTTTTTAGTGACTTTCTAAATCTAAAAG
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	ATATTGGGAACCCATACACCATCTGTCTTAGGTT
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	TACTGCCGCCACTGCCTCAGAAACAATTTTAGGATT
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	TCCGTATTTTTTCCCGATATGGCCCCTGGTTGCAA
ATTGCAATTTATCAAAATCCCTATTAGGAATTGAAAC

>NC_010628|5|2|1228880-1229486|CRT
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	AATCTTTTTTGCTGATTATATCAAATCATTAGATG
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	TTTACATGTACCCTAGTTGATACACCGTCCACAT
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	CTTACCGCACTTGATTGGGTATACAAAGCCAAT
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	TCTATTATGTATACTTCTGCCCGGACTACGAGA
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	CTAGGGCTTTTTAGTGACTTTCTAAATCTAAAAG
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	ATATTGGGAACCCATACACCATCTGTCTTAGGTT
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	TACTGCCGCCACTGCCTCAGAAACAATTTTAGGATT
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	TCCGTATTTTTTCCCGATATGGCCCCTGGTTGCAA
ATTGCAATTTATCAAAATCCCTATTAGGAATTGAAAC

>NC_010628|5|3|1229093-1229486|PILER-CR
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	TCTATTATGTATACTTCTGCCCGGACTACGAGA
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	CTAGGGCTTTTTAGTGACTTTCTAAATCTAAAAG
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	ATATTGGGAACCCATACACCATCTGTCTTAGGTT
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	TACTGCCGCCACTGCCTCAGAAACAATTTTAGGATT
ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC	TCCGTATTTTTTCCCGATATGGCCCCTGGTTGCAA
ATTGCAATTTATCAAAATCCCTATTAGGAATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_148220250.1\|1216243_1216399_-\|DUF2887-domain-containing-protein	unknown	unknown	gnl\|CDD\|371375
NC_010628.1\|WP_012407789.1\|1236949_1237621_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_010628.1\|WP_041565919.1\|1233998_1234856_-\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|224714
NC_010628.1\|WP_012407791.1\|1239072_1239945_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|184028
NC_010628.1\|WP_012407778.1\|1219360_1220419_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237190
NC_010628.1\|WP_012407784.1\|1229539_1230433_-\|nitrogenase-iron-protein	unknown	unknown	gnl\|CDD\|237312
NC_010628.1\|WP_012407783.1\|1228189_1228513_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407779.1\|1220618_1222277_-\|alpha-amylase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|200488
NC_010628.1\|WP_148220251.1\|1240307_1241729_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_010628.1\|WP_012406904.1\|1223140_1224034_-\|transposase-family-protein	unknown	unknown	gnl\|CDD\|372577
NC_010628.1\|WP_012407777.1\|1216512_1218798_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|277335
NC_010628.1\|WP_041565211.1\|1237703_1238198_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407780.1\|1222644_1223022_-\|DUF1823-family-protein	unknown	unknown	gnl\|CDD\|370156
NC_010628.1\|WP_012407788.1\|1235497_1236103_-\|DUF4360-domain-containing-protein	unknown	unknown	gnl\|CDD\|372992
NC_010628.1\|WP_012407781.1\|1224243_1224546_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|237713
NC_010628.1\|WP_012407786.1\|1233271_1233712_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407793.1\|1241852_1245200_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182589
NC_010628.1\|WP_167315576.1\|1228673_1228856_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565210.1\|1230541_1230796_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407782.1\|1227717_1227897_+\|high-light-inducible-protein	unknown	unknown	gnl\|CDD\|177653

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_148220250.1\|1216243_1216399_-\|DUF2887-domain-containing-protein	gnl\|CDD\|371375	pfam11103, DUF2887, Protein of unknown function (DUF2887). This bacterial family of proteins has no known function. These proteins may be distantly related to the PD(D/E)XK superfamily.	1.6273e-15
NC_010628.1\|WP_012407789.1\|1236949_1237621_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	2.32958e-27
NC_010628.1\|WP_041565919.1\|1233998_1234856_-\|DUF72-domain-containing-protein	gnl\|CDD\|224714	COG1801, COG1801, Uncharacterized conserved protein [Function unknown].	1.06933e-77
NC_010628.1\|WP_012407791.1\|1239072_1239945_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|184028	PRK13398, PRK13398, 3-deoxy-7-phosphoheptulonate synthase; Provisional.	1.15709e-173
NC_010628.1\|WP_012407778.1\|1219360_1220419_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237190	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional.	0
NC_010628.1\|WP_012407784.1\|1229539_1230433_-\|nitrogenase-iron-protein	gnl\|CDD\|237312	PRK13236, PRK13236, nitrogenase reductase; Reviewed.	0
NC_010628.1\|WP_012407788.1\|1235497_1236103_-\|DUF4360-domain-containing-protein	gnl\|CDD\|372992	pfam14273, DUF4360, Domain of unknown function (DUF4360). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 200 and 228 amino acids in length. There is a conserved GCP sequence motif near the N-terminus.	6.15443e-58
NC_010628.1\|WP_012406904.1\|1223140_1224034_-\|transposase-family-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.34968e-24
NC_010628.1\|WP_012407777.1\|1216512_1218798_+\|hypothetical-protein	gnl\|CDD\|277335	cd07389, MPP_PhoD, Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	0.00093327
NC_010628.1\|WP_012407780.1\|1222644_1223022_-\|DUF1823-family-protein	gnl\|CDD\|370156	pfam08853, DUF1823, Domain of unknown function (DUF1823). This presumed domain is functionally uncharacterized.	1.72215e-80
NC_010628.1\|WP_012407779.1\|1220618_1222277_-\|alpha-amylase-C-terminal-domain-containing-protein	gnl\|CDD\|200488	cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	1.66056e-157
NC_010628.1\|WP_012407781.1\|1224243_1224546_+\|acylphosphatase	gnl\|CDD\|237713	PRK14423, PRK14423, acylphosphatase; Provisional.	3.056e-52
NC_010628.1\|WP_012407793.1\|1241852_1245200_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|182589	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional.	0
NC_010628.1\|WP_148220251.1\|1240307_1241729_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.77282e-70
NC_010628.1\|WP_012407782.1\|1227717_1227897_+\|high-light-inducible-protein	gnl\|CDD\|177653	PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.	5.8566e-05

>NC_010628.1|WP_167315576.1|1228673_1228856_+|hypothetical-protein
MAELCYVQELGSDACGGLRLRISIHPRTLWRVVFSHLPLANSQFIVLSFQHSRNRTLKTK
>NC_010628.1|WP_012407783.1|1228189_1228513_+|hypothetical-protein
MEIPQRVSVRYKDASFNSNEIRLRTLRLGLQIWEEQTKPRKTELYQFISSCLKQVDRQDRFMFSLLFIELTDMIRNSSLERGTKEVLIKTAFREFACAITDFEDVGK
>NC_010628.1|WP_012407782.1|1227717_1227897_+|high-light-inducible-protein
MTGFKNPAPIVSEDPNAVRFGFTPQSENWNGRLAMIGFLSAILIEAFSGQGLLHFWGIL
>NC_010628.1|WP_012407781.1|1224243_1224546_+|acylphosphatase
MQNSTALPKIVRAHVFISGRVQGVGYRYSTVDTARQLGLTGWVRNLPDNRVEAVFEGAREVVDDMVRWCHSGPPAAVVKDVVVEYEVPEGLRGFEVKRVE
>NC_010628.1|WP_012406904.1|1223140_1224034_-|transposase-family-protein
MLNIEGALKQDRLLRALTGLNRKAFDALLPTFTTMYLDTQQAKPRQRGLGGGRKARLLTAQDKLFFILFYFKCYPTFDVAGLLFDMHRSQAHEWMHRLQPILEAALGQKMALPERHLESIEAFLSRFPGVQRVMIDGTERPIARPQEREQQQQNYSGKKKRHTRKHLAAVDETKRVLILSKAREGKLHDKRFHDEDDIAGSVPDEIPIEVDSGFQGLQKQYDNLHLPHKKPKGGKLSDLQKTENRQLSQSRVVCENAFAGVKRYNAASVIYRNRIENFDDHLMLTAAGLWNFYLMAA
>NC_010628.1|WP_012407780.1|1222644_1223022_-|DUF1823-family-protein
MSNLPPLNTATIWAILDDKIDDATVNQLLWHYLGYRYDSSTAQWDISQVAPEWQEEYPQPPNFIESRPATVKLTRSIPAENKQMLKEKLGFKGYKIGEFGPRQTRRATAANWFLSYLQQTNGKIE
>NC_010628.1|WP_012407779.1|1220618_1222277_-|alpha-amylase-C-terminal-domain-containing-protein
MAKPIEFNLFAPYNKGAALIGSFSDWQEIPMEKGNDGYFRTSVELKDGVYKYKFRVQSNSWFFEPEQWVDVTDPYATDIDELSGKDDSVIHVKDCERITDTYVWQNDDKPLPADHELVIYELHVGDFSGGEDDPYARGKYKHVIEKLDYLSELGINAIELMPLKEYPGDYSWGYNPRHFFATESSYGSTAELKKLIDECHGRGIRVIIDGIYNHSEASAPLTQIDHDYWYHHEPRDPDNNWGPEFNYEHYDEKLEIHPARKFIGETIRFWIQEYHLDGIRYDAARQIANYDFMHWIVQEAKNTAGAKPFYNVAEHIPETTSITNVDGPMDGCWHDSFYHCILEHICGDTFDLERLKDVIDCKRQGFLGATNVVNYLTNHDHNHIMVELGNREIFDEEAFRRAKLGVAILMTAVGVPLIWMGEEFGEYKPKQPESSKIDWTLLGNDLNRSLFESYKGLTNLRKSNHALYTENIDFIHENPEAKVLAYTRWNDEGSRVVVIANFSENFLAGYHVPNFPSAGTWHEWTGNYDVESGDDGIITDLGPYEAKVFVWQ
>NC_010628.1|WP_012407778.1|1219360_1220419_-|3-deoxy-7-phosphoheptulonate-synthase
MHNKLFNSNIDNANIENDRILLTPNEIKSKLPLTQLAEQRVLAYRQEIEDILDFQDRRKFIVVGPCSIHDPKAALEYSERLKALSEEVKDKLLLIMRVYFEKPRTTVGWKGLINDPDMDDSFHVENGLLIARDLLLKITELGLPAGTEALDPIIPQYISELITWSAIGARTTESQTHREMASGLSMPVGFKNGTDGNIQVALNALQSARNPHNFLGINQNGQVSVFQTKGNGYGHVILRGGSQPNFDAANVKLVEDKLKQANLPPRIVIDCSHGNTNKDYKLQGAVLENIIQQIVDGNTSIVGMMLESHLYEGSQPITDKQEELKYGVSVTDKCISWEETEKIILAAYEKLK
>NC_010628.1|WP_012407777.1|1216512_1218798_+|hypothetical-protein
MKYQAGDEFLQELPLILAGPILKHTEPESVTVWVALKQSCQVELKVYETTNNGEALGNCLLEGERSSFALGKYLHVVAITARSPVGYRLTSDRLYAYDLQLTAADQTRQMQQALCSNSSPTVSISYFAHQKPTFVLPPNRLQDLQISHASCRKPHGHGFDALPILDSLIEASANQPQHRPHQLFLTGDQIYGDDVADPSLWVATTLGDALLGWEEKLPVNGVYCTPQQLPPGQRADVATNQAGLTAGLHNKSEKVNSHLFSLGEYYATYLLAWSPVCWPTTFPQGHQVTRDRHAIKDWNQAVWHLRQFIYTLWKVRRALANIPTYTIFDDHDVSDDWNLNQAWCLRVLGRPLGRRIVQNALLAYTVFQGWGNTPGQFTEDKSGEKLLAAAQAWSASQGKDAKADDAIARYVGMPANDPATGLPILVRDGSVFILDRDPEALTWHYIVRSNCHEVIVLDTRTWRGYPADQKPIAPPMLLCPKAFEQQLLLPLQQVAEQTQIQNTFVIAPTNVFGLQVIDWIHHWHLQREKVFSTDVGDAWNINVEALAKFLTTLFEERQQVVILSGDIHYSSVAHLSYARTHSKLQSVLVQLTASALKNEEILTRLIHTRLKDWLLPEKVRHWIGWSNPPNMVEISAKQLHHNRQMLANSEWHCVLEWIPRNTVQTSTCTADILSLIAPWKRAENAKWKWLQPLMFWKFRWFQDGREVVGLNNLGLVHFEFADASNSDKVIQDLYWFSCWYPTQVVYSRFESELTPNHPLLR
>NC_010628.1|WP_148220250.1|1216243_1216399_-|DUF2887-domain-containing-protein
MSNSQRVTCVYLNELSSISTSSIGIETVKLIIEPESTATTKAIEIVNSARK
>NC_010628.1|WP_012407784.1|1229539_1230433_-|nitrogenase-iron-protein
MTDEKIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQTSVLQLAAERGAVEDIELEEVMLTGFRDVRCVESGGPEPGVGCAGRGIITAINFLEENGAYKDVDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAMYAANNIARGVLKYAHTGGVRLGGLICNSRNVDREIDLIETLAKRLNTQMIHYVPRDNIVQHAELRRMTVNEYAPDSNQSNEYRILAKKIIDNDKLAVPTPIEMEELEELLIEFGILESDENTAMLVGKTATEAPVK
>NC_010628.1|WP_041565210.1|1230541_1230796_+|hypothetical-protein
MSLDIAPRQKQSKSEYIYPQSDSSSDRKSLSPNNEVFKTLTSALSVVVTEFQMVAQASRVVAAGIQTNADLFPEPHNQPNCNPL
>NC_010628.1|WP_012407786.1|1233271_1233712_-|hypothetical-protein
MSRLLYESSVSHKGYLIIPFVFAKVYNYEIYSYKLLCEIGRRSQFHKAENPAGIYGNGVSNIIDIAKEHIDQNSDFVNQRDYFKSRYIYRNHLIIIFQEGDKCFYDHYPPELLNNIAAPKLFKSEYECLSWIKQGLDGPQVRQRAI
>NC_010628.1|WP_041565919.1|1233998_1234856_-|DUF72-domain-containing-protein
MNFFIGCAVWAYKGWVGELYPQGTRTADFLHLYSRRFTTVEGNTTFYAVPNQETVTRWAAETPAGFEFCLKLPRDITHQGLLQPYIPAALKFLEGMRPLGKHLGPIFAQLPPSYAPALFDDLTNFLEAWPRTDAPLALEVRHPDWFREPHASNLTALLQKLGVGRVLLDSRPIYTGDDDPQLQSERRKPKLPLQLSVTAPFTLIRFISHPNLSVNQPFMEEWVRQIQQWLQAGVRIYFFVHCPIEARSPNIARHFQQLLEQSDTPVPPLPWNNLEHPPNQLSLWS
>NC_010628.1|WP_012407788.1|1235497_1236103_-|DUF4360-domain-containing-protein
MNNQNFKTTSINFIKSFLAAATLITASVGPAFANDKVEIVGAEYGGNGCPEGSASVSVSPDGQELSILFDKFIAVGNKAEERRKNCNLSIPIKVPQGFQISLYDADYRGYVAPSTIGRLRAEYFFAGQRGPVFSRTFNGESDYNVRDQLVTVADVWSRCGDSVNMRVNAAMTASGQGMATVDSFDLAHRGLVYHVKYRQCR
>NC_010628.1|WP_012407789.1|1236949_1237621_-|pentapeptide-repeat-containing-protein
MSDLERYYRILELEPGATLEEVNQAYKDLVFVWHPDRIPKDNLRLQQKAQDKLKAINEAREKLRSLKTKHQTISNSPSPSSSPSPSYQQQTPSQKTQPPPKQNSDLSGKDYSRANLSNKDLSGRNLSYANLSGANLSDTFMHKVNLRGANLSEANLFRANLLLADLREANLRGANLIGADLSGTDLRGADLTGARIRSGERLLVKLIGANLAGAIMPDGEIYQ
>NC_010628.1|WP_041565211.1|1237703_1238198_-|hypothetical-protein
MPSSKILAQSFDYYGVYPCPVCRIGKISHMPLMEAMACDFCQEIFTVNLEIQQIKMPSRQPPLTWRWNGFSWTEGQLEGVELGWGYGLAAAVFVILPTTLIGIVAYYFPADLKEPITWTPYIWTVLTFLSHLSIIVWIVIEIYQIPVAAYLRAIARWRNRGMER
>NC_010628.1|WP_012407791.1|1239072_1239945_+|3-deoxy-7-phosphoheptulonate-synthase
MINAKLAAQSHPNHQTIVKISEKVAFGGEELVIIGGPCTVESLEQMEIVAQKLSTASIQGLRGGVYKPRTSPYAFQGMGEEGLRILARVRSHYNMPVVTEVMSISQIEVVAAHADMLQVGSRNMQNFDLLKALGQAGKPILLKRGLAATIEEFVMAAEYILSHGNPDVVLCERGIRSFDDYTRNVLDLAAVAALKQITHLPVIVDPSHAVGKRELVAPVARAAIACGADGLIIECHPQPEKSVSDARQALSLEDMVRLVDSLKPVAKAVGRNISSNVGAGLSPAPIFYAA
>NC_010628.1|WP_148220251.1|1240307_1241729_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MRRLVSIQTIKSSSLTAQTIFSFHNVIQRGRFSLLVLGLTYLCAACNASEAQSSGKEAGKKRAVPVVVATAAQKTIPVQLSATGTVEAYSTVSVKSQVGGQLTGVYFQQGQNVKKGDLLFKIDSRPLQAALMQANAAKAKDLAQVKQAQANVLKAIAQVNQAKANVVKDKSQATNANVQAQRYSSLLKQGAISKEQSEQYQTTAAAQQATVKADQEGVANAQAAVAAAQADVQNAQAVVLADEAAIDNAKVQLSYTSIYSPIAGRTGSLKLNQGNLVEANATDPLITISQIHPIYVNFSIAQRLLPDIKKYSANNGKLEVDALPPKDAGRPVRGELTFVDSGVNTQTGTIQLKGTFANNDDRLFPGQFVNVVLKLSEEPNAITVPSQAVQSGQKGQFVYVVKPDKTAEMRTITVGDTVENETVIKQGLKPGEQVVIDGQFNLVPGATVQVKPEVGSRGAGGRGAGGGGAGGER
>NC_010628.1|WP_012407793.1|1241852_1245200_+|efflux-RND-transporter-permease-subunit
MNISELFIRRPIMTTLVMVGILIFGLISYQQLPVSDLPNVDYPTLQVTANLPGASPETMAASVATPLEQQFSSIAGLSSMNSTSSLGTTQLTLQFDLNRDIDGAAQDVQSAIAKGAKQLPTNMPNPPSYRKVNPADQPVLYISLNSSILPLSTVDKYAETLLAQRLSMVDGVAQVQVFGSQKYAVRIQLDPEALSVKGIGIDEVADAIANGNVNLPTGTLYGKQQNSTIQANGQLNDAASYRSLSVAYQNGAPVQLGELGQVLDSVENDKIASWYFPVKKESREAGEKSQSKNSGVRAIVLAIQRQPGTNTVQVVDAIKKLLPTFRTQIPAAVNMDILYDRSQSIRESVDDVQFTLLLTIALVVLVIFLFLRNISATVIPSLAVPLSIVATFGVMVLLGFSLDNLSLMALTLSVGFVVDDAVVMLENIVRHMEMGESRMEAALNGSREIGFTILSMTISLVAVFIPILFMEGILGRLFREFAVTISVAILVSGVISLSLTPMLCSRFLSPPHHEQESEGDEEHTSLREAVPTTTLSNRGSRGAGEQGSRGDEEQGREGEILNSESHSTTLTASPAPSLQSRIKNFNRRLYNFSENVFNVILGGYDWSLKKSLKYHRTTMVISGAILVATVYLFIIVPKGFVPNADVGQITATTQASEDISFDEMVKHQQAVAAIAYRDPNVDSINSSVGAGGPNASANAGRLLIELKPRDERRLSADEVVQELRPKLSGVPGIKVFLQNPPAINVGGQQTKAQYQFTLQSPNIQELYQYAPALEEKLRSLSDLQDVNSDLQIKNPQVKVDINRDQASALGLTANQIETALSNAYGTRQVSTIYAPDSQYQVIMGVEPKYQQNANALDLLSVRAPSGQLVPLNAVATLSKDVGPLTINHKGQLASVTFSFNLKPGVSLGNVTGKIEELARQTLPPTISTGFQGSAQAFQSSIQGLGLLLLVAILVIYIVLGILYENFIHPLTILSSLPSAGFGAILTLLLFQVDLNIYAFVGIILLVGIVKKNGIMMVDFAIVARHNGKTPYDAIYEACLVRFRPIMMTTMAALMGTLPIALGLGAGADTRRPLGLAVVGGLVFSQFLTLYLTPVFYTYMESWQTKMKKRNWRKQP

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Crispr_ID: NC_010628_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_6

1322778-1322866

Orphan

A:N

Consensus_repeat	Method
CAACGAGAAGCATTGCCAGAGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_6

>merge|NC_010628|6|1322778-1322866|CRISPRCasFinder
CAACGAGAAGCATTGCCAGAGGAAGAGGAAGAATTGCAGATGAAATCTCTGGACAATAGCACACTGCAACGAGAAGCATTGCCAGAGGA

>NC_010628|6|6|1322778-1322866|CRISPRCasFinder
CAACGAGAAGCATTGCCAGAGGA	AGAGGAAGAATTGCAGATGAAATCTCTGGACAATAGCACACTG
CAACGAGAAGCATTGCCAGAGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012407858.1\|1329271_1330111_+\|DUF4255-domain-containing-protein	unknown	unknown	gnl\|CDD\|379449
NC_010628.1\|WP_012407849.1\|1318684_1318924_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407862.1\|1333069_1333417_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407845.1\|1312124_1313858_-\|VgrG-related-protein	unknown	unknown	gnl\|CDD\|273730
NC_010628.1\|WP_012407863.1\|1333693_1334077_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_167315578.1\|1322312_1322459_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407860.1\|1331940_1332396_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NC_010628.1\|WP_012407854.1\|1324113_1324758_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238017
NC_010628.1\|WP_012407855.1\|1324729_1326874_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|378974
NC_010628.1\|WP_012407857.1\|1327652_1328774_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_010628.1\|WP_012407852.1\|1321864_1322281_-\|XisH-family-protein	unknown	unknown	gnl\|CDD\|370136
NC_010628.1\|WP_083782461.1\|1319370_1321395_+\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338
NC_010628.1\|WP_012407848.1\|1318160_1318685_-\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NC_010628.1\|WP_012407844.1\|1311524_1312022_-\|PAAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|269826
NC_010628.1\|WP_012407856.1\|1326917_1327598_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NC_010628.1\|WP_012407846.1\|1313938_1314496_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012407851.1\|1321541_1321877_-\|XisI-protein	unknown	unknown	gnl\|CDD\|341357
NC_010628.1\|WP_012407859.1\|1330141_1331803_+\|phage-tail-sheath-family-protein	unknown	unknown	gnl\|CDD\|226028
NC_010628.1\|WP_012407847.1\|1314534_1318137_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NC_010628.1\|WP_012407861.1\|1332500_1333058_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012407858.1\|1329271_1330111_+\|DUF4255-domain-containing-protein	gnl\|CDD\|379449	pfam14065, DUF4255, Protein of unknown function (DUF4255). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length.	1.95107e-16
NC_010628.1\|WP_012407861.1\|1332500_1333058_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	3.41237e-33
NC_010628.1\|WP_012407845.1\|1312124_1313858_-\|VgrG-related-protein	gnl\|CDD\|273730	TIGR01646, conserved_hypothetical_protein, Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E.	3.02007e-25
NC_010628.1\|WP_012407860.1\|1331940_1332396_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	2.21581e-43
NC_010628.1\|WP_012407854.1\|1324113_1324758_-\|FHA-domain-containing-protein	gnl\|CDD\|238017	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).	4.05543e-17
NC_010628.1\|WP_012407855.1\|1324729_1326874_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|378974	pfam12849, PBP_like_2, PBP superfamily domain. This domain belongs to the periplasmic binding protein superfamily.	9.27508e-09
NC_010628.1\|WP_012407857.1\|1327652_1328774_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.25345e-37
NC_010628.1\|WP_012407852.1\|1321864_1322281_-\|XisH-family-protein	gnl\|CDD\|370136	pfam08814, XisH, XisH protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	2.27728e-74
NC_010628.1\|WP_083782461.1\|1319370_1321395_+\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	8.50172e-38
NC_010628.1\|WP_012407848.1\|1318160_1318685_-\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	1.55575e-45
NC_010628.1\|WP_012407844.1\|1311524_1312022_-\|PAAR-domain-containing-protein	gnl\|CDD\|269826	cd14741, PAAR_5, proline-alanine-alanine-arginine (PAAR) domain. This domain is found in the PAAR (proline-alanine-alanine-arginine) repeat family in bacteria as well as some archaea, where it forms a sharp conical extension on the VgrG spike, a trimeric protein complex of the bacterial type VI secretion system (T6SS). The T6SS is responsible for translocation of a wide variety of toxic effector molecules, allowing predatory cells to kill prokaryotic as well as eukaryotic prey cells. The pointed tip of the PAAR domain is stabilized by a zinc atom positioned close to the cone's vertex and is likely to be important for its integrity during penetration of the target cell envelope. VgrG proteins are orthologous to the central baseplate spikes of bacteriophages with contractile tails, and genes encoding proteins with PAAR motifs have been frequently found immediately downstream from vgrG-like genes. It has been shown that PAAR proteins are essential for T6SS-mediated secretion and target cell killing by Vibrio cholerae (encodes two PAAR proteins) and Acinetobacter baylyi (encodes three PAAR proteins); inactivation of all these PAAR genes results in inactivation of Hcp secretion as well as T6SS-dependent killing of E. coli.	1.89947e-16
NC_010628.1\|WP_012407856.1\|1326917_1327598_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.63463e-61
NC_010628.1\|WP_012407851.1\|1321541_1321877_-\|XisI-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	2.93678e-59
NC_010628.1\|WP_012407859.1\|1330141_1331803_+\|phage-tail-sheath-family-protein	gnl\|CDD\|226028	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only].	1.0142e-49
NC_010628.1\|WP_012407847.1\|1314534_1318137_-\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	6.32964e-05

>NC_010628.1|WP_167315578.1|1322312_1322459_+|hypothetical-protein
MRSPILSVELSAIARYHRIGFQKIYTFDKLCYECDRSTLDVNNSKILI
>NC_010628.1|WP_012407852.1|1321864_1322281_-|XisH-family-protein
MAAKDKFHAVVRIALEKEQWKITDDPLRLEVGGTKFEIDLGAEQLLAAERGEQKIAVEIKTFLSDSPLTDYHAALGQFLNYRLALEISDPTRILYLAVPIGVYEAFFKREFAQISVERYQIKQIIDDPIQEVIVQWIP
>NC_010628.1|WP_012407851.1|1321541_1321877_-|XisI-protein
MDTLESYRHIIQSLLTAYAAIPIANGQIDCYTVFDTKQDHYMVINVGWDGHRRVYGCVLHLDIKQGKISIEQNMTEMRVAQELVERGVPKDNIVLGFQSPEMREYTGYGVF
>NC_010628.1|WP_083782461.1|1319370_1321395_+|DUF4157-domain-containing-protein
MQRMAQPVNRQPIQREILSEEEELQMKPLASSITPLVQREALLEDEEEELQMKPVDNSTLQREALPEDEEELQMKSLDSSTLQREALPEDEEELQMKPMVQRQAEAGMAAAPDLEASISQARGGGQAIADNIREPMEQAFGADFSGVKVHTDGKSDQLNQSIQARAFTTGQDVFFRQGEYNPGSRGGQELLAHELTHVVQQNNNTVNRQLIQRAVGFEFEFGEWKSYKNDDKKSRLAKGEEIISGTGYKIEGEDTYDSKVSAVEVVTKPYTTRKEALESVTEAQEKMQSMSKDGEDIGHLANKYGGKASVFIEPHGKAGKVQASAAIPLDKLANLYSIQAGGDGKGLGASVTTKLQNEDLKNKYLDGKDASPELIGLVTLVLDYIEQGSGKGNLSYPKSTFKLMARTSFDKMLTLVPEHSFFSNKSNIDKWAGLVLEIAASLGMSKKQEVVESKKSVMTDVEVKKERKFKWMTRIFGKRKVTEKVMKEFIMKQPTFVKKTAEELAEEPIINQVLMGMELLPEDSDKDKQSYKLKIKRIEWLKGMLKEDLISKATDKRFEGMGSYGVSTDVQVIPEDIEVVTEKAVSKAVDELENEDEAQSKSVSKETKEAPIFELRGMKDMFAIQQDINLTDWTEKVKAVFEVIEEANKGESFAPGGKPNIPKDVDKPDIWEKV
>NC_010628.1|WP_012407849.1|1318684_1318924_-|hypothetical-protein
MDSKQQQTFFTFDGDVGGTAGYAGVSAASDATKAAKTASKYLNDSRLMNQLTEHVYKLMLEDLRSQRERIGSYDSQRWL
>NC_010628.1|WP_012407848.1|1318160_1318685_-|phage-tail-protein
MATGANNGNITHELNYVTTNRFYVEIDSSIAASFAECSGLSVQIKKNVFQEGGVNDQQRIYLGHTEFADITLKRGFTDHPGFWNWMNAVFDEKKKTSRRNVNILIFNQAGETMMSWTLIGAIPITWKTPALQADGKAVAIEELTLAYEGLQVARSTGGGSSVQRNQKSGYFVSS
>NC_010628.1|WP_012407847.1|1314534_1318137_-|hypothetical-protein
MQIIQSSLGNNIHPLGVISSLYNSQGIILRKESHSLHSRSNFISTIQTKPPLVKSSKFFLSRQYEPSIEPLIGWDSWDTQDINSEFGEFPLIEFDASDSIAELENSNESVKNSIPKIMPTPNETNTSNGTSQEVNIKTKSKPKKTNKSKKPLEKEPKSKSRTKKAIKSSSPKNFEPIVDKTNINLNKDNLLISDESMPIEANFETQDLQLNIVLDTTTKDRSSVSTPTVDTSPSFQDKSTLFDNFATDASDELSETSELISSFSSKDLSLTENTLTSEENIELEDETSELVNTSSIEVPSKKNTEKIFIGDSNFTNSEEELIPEVSESLNLSGIPVSQTPPQQDIQTVQVPSIVDNKSSVSRTNLIKGNLIQAKEILPTLNSLLQEEESPNINTKLEEITAIEADLISEKSKNNFVTDNAVSDSEKNTNNFVTNNAISDNYLTLSSAPTSSEVDDSPTLLHALENDENTVETHFTSPNTESSVAKNPITVQQEIDPDFSHNVKKATQNLTPHPPLLPDNRENLKPLSFQEKGFTDTVKSQEIDSSVTSEFPDITPVQLTPTSAAIEHTPSLFSNPDSDEQLVTSESQSAMVLNVSDVSGNVTSLQRDSNVQNLSSEFTESQPILAAPEITEAPTISATSPEIAETPTVSATSPEIDEALVVSTNSPEITETPTISATSPEIDEALVVSTNSPEIAETPTVTAISPEIDEALVVSTNSPEITETPTVTATSPEIDEALVVSTNSPKITETPTISATSPEIDEALVVSTNSPEITETPTVTATSPEIDEALVVSTTSPEIDEALVVSTNSPEITETPTVTATSPEIDEALVVSATSPEIVEKTSIFREIIDNEQAVESENPEISTFAYTWDNPDILDNPTSLQDEVSTAPKVEQNAIAENLPAPKGYATGGHVTDSRVENREQIAPSDTVPAMLTPGEFVINTRDAQKNLPLLHHINTGGTPQDIILPSLQTPNPIEPEATISPETPTKVDSFPDTALQLKSAETDSPEISNSLIPSSLGLNINKQKLSILNSPQLHTLQNETIDVGESSPQYSSPPLIFRKANPSTHTPSQWSDTPSQWSSVEDLLNGNNDEFSSFNFNDEESNSQNYEFSHVSESPQVFAKHLPSPRGFANGGEVTPPDISREIQPITETIESASSSSPGDEKDDTADLEALAREIYHRLRQRIEIERERHGGYSGRLPW
>NC_010628.1|WP_012407846.1|1313938_1314496_-|hypothetical-protein
MASPAIIVIQKLKPQLEKAKLVAYNNEAPDIELMFNPTDISFARTVKWESKDGNRGTTLLPKVNFSGVEPYKFTLKQLLYDTYETKESVIKKYIDNIKKGVETITKATDKRPPVYIFTWGDEYFYCVITSLTYTLNMFLSDGTPVRALVDIALQEVDKNNLPGGRKSDSKGNARATDKKGQKLSK
>NC_010628.1|WP_012407845.1|1312124_1313858_-|VgrG-related-protein
MPAKKSLYLSEPKIQVDGQPASPELMKDLLQITIEESLHLPAMFTLVIHNSYIPTSDRAENKAWRHDQLFKIGKKVKLGFTSSTTLDNNFQEEVGEFIIEGEITAMEVHFNEKSEADIIVRGYDISHRLHRGRYNRSFLNETDSGIVNKIIKEVGIKPGNIEQTGEVHKYVFQENQTNMEFLRERAARIGFELFITEEKLNFCKPKTQGALSLKWLVDINKFSTRVTSAEQISSVEVRAWDYTQKKLISGTANKEKQTTETGNKLGSSTSNAFSNLKSPKMIVVDKPVASKKQADTMAQALCDELGGEFVYADAKAEGNPEIRPGRVISLEGMGDRYSGKYYVTETRHFFNQRVYETDFSVRGLRSGNLFTTLSPEKRLQPSETLLVGIVTDNKDPEKMGRVKVKFPTLTEDHTSDWARVVAVGAGNNRGFDCLPEVNDEVLVGFEHGDIHRPYVIGGVWNGKDAPPERVSDSVASGVRLRTIKTRVGHVLQFVEEDKGTSKTGIRVETKDGHKIYLNDSQSCIEIETKGGHKIKMDDMAKSVSVKSTGNMSLDAAGNIDITANGVITVKGAMIRLN
>NC_010628.1|WP_012407844.1|1311524_1312022_-|PAAR-domain-containing-protein
MGKPAARITDNVAHPLPPVLTGGPGSPNVLIGSLPAWRGVLAAAVPALQSAKQISDTAIQVAEAATLAAAGTPGAPAALATEQTTKATSAATMGSAIAAAAAGADIHNCATPLPLPPHGPGVVIDGSQTVLINNLPASRMGDTVLEALGPPNKIIKGDFTVLIGG
>NC_010628.1|WP_012407854.1|1324113_1324758_-|FHA-domain-containing-protein
MPANRCPNPSCEYFNRALPNNAKVCPWCSTPVGNVVSPTPQPPSQPPPIQQQPSQPPPAQYQRPPTEQPNYQPPQQAPVDYSTVYQPRVSYQPTPPAYVPPPQRAPALKLIHTTGREFHLVGEGGYIGRRSQSPGIAPPEIDLTGIPSEGIVSRRHARVDWDWSQNAYMIVDMSTNGIYLNNNPLTPGMQYRLLNGDVLRFGQDNLVNFTVYVV
>NC_010628.1|WP_012407855.1|1324729_1326874_-|substrate-binding-domain-containing-protein
MPSFESFYQEYPCSYNSPLSCDRPFQTAQQIKGAKFCLECGFPATLPQEAEIKGSQGTYQIASFIGVRGLGRLYSGIQLKDKQPVIIKEYLLPNRCFNESETLKRKETFKRVGGVSLADSRIQNFRLVETKEAIADEKGERCYLITQGIESSQTLGKYLIEKGAMTSPDVREVLNQGLQTLQFLHTQKLRFPSNQVQLGITHGNISLDSTLIKLENNQKFSIYFCDLATWENLFIPPIIPQPAPARPEQDLESLGLLAFYLWTGRTTNFLSNQPLDPRDNQQWPDTDSHLKQFIYRLIGLETPFENAETARQALLQLPKENRGKSSVSSPGSQAIEKRLPMPLILIVILALLLLGGGILYWLLGKKTDSPNQYILWSRLVRNFSEVPNVPAGQFAYTGEKDSTWSYILTQSVENSRLGELLTRPKPDATATFNYEPVLSSNVKNPIKSIEEVETNKKDFAITSLVENITDKLSKKQVAYDGLLVFVAFNKRDSNLANALGGQISLEQLRQIYTGKITNWQQISPKLPNLAVKPFAPTEPEAISKFKDIVLKNVFQDEALFEDTVKNTKIDTTKTQNQIRSETLEGRTTGIISFGIISKTSSQCTGYPLAIADGKKSAIQPLFQRRDRRSINPSDDLCQHDDYYVDVTTFQSYPLGYPIFVVYPKDTSRLPGGSTFAQMLTTRQGQCLLSKVGLVALQPMPDDINSYACKSVPQS
>NC_010628.1|WP_012407856.1|1326917_1327598_-|response-regulator-transcription-factor
MANDSKKLSVLLVDDEERFRQGLRTLLNFYSINSALPVEVIGDADSVEQVLKFTAQKCPDLILLDMQLKGCDGITVLASLKETAYTGKVLVLSAHQEDDWIFRAMQAGAAGYVFKNRVATQLCEAIDTVTRAEIYLPSEVASRFFRFFQAYSDSCLKACHEVHLTEREQEVLYWLTQGASNEEIAKHLYVTVATVKAHLTSIFEKLKVTSRTQAIVAALKLGLVHA
>NC_010628.1|WP_012407857.1|1327652_1328774_-|HAMP-domain-containing-histidine-kinase
MTLGFYVQKLENGSNYLNSSDIQSYCQLESEQLTSQYPIFFARIVYHDYLLKNHQEVINYGQDQAPFSQKTLAYLCSEAWLTDFPPAFTLHEFKLKDFSSISYVCPFAYRNQKPEYIQIITHKPLSESLQLYVKRSAMLLSKYADIYLDYGRQKTEIQLLEDILHRIGHQLRNSLGLIGLYAHNLCLGLEDSPWQEQATIIGESIQDLDTNLNELIDCGQSAKLRVKLQDLRSLVDESIKNLQPLINQKQLKILIPDTSTILKIDKLQMKQVFDNILSNAVHFSPNSGTITCSWQVFQDEVLIKISDQGPGLSQEDLQKVFTPFYSRRKGGTGLGLTIAKKIILDHQGSIWAQALSENGAQFSVILPRPRSGN
>NC_010628.1|WP_012407858.1|1329271_1330111_+|DUF4255-domain-containing-protein
MLIFVLQTLAEILAGGTSLTSTEQIDFSHPGNRREEGAGPTLNLYIFDIRESKQVQHSGRQVERKLTRALQPATVNWAPAWFDVSLLLTAWDRTALGEHHFISEALAVLLRHRTLEEEFLVPELRGYGNLNMTVALEPPIEIGSLWSALNVPLRSALYLTVTIPFEPQPTPVPLVWERIFNLRNQLSRDSDSLVLTRRVAIAGIVKSAVTNLPLVAAEVAVRGTDKSISTTKEGLFFFEDLHLGNYVLTLNHPGYLPQNVNALVDNQSNTFKEIFLTPE
>NC_010628.1|WP_012407859.1|1330141_1331803_+|phage-tail-sheath-family-protein
MARLDYFAPGVYIEEIDRGSRPIEGVSTAVAGFVGFTEDVRGGAELYKPMLVTTWTQYLNYFARPNSDGFTDFNAYLPFSVYGYFMNGGGRCWVTSIGTQLPGAPRPATPEPATLRINSRGNRPALRFTLRPEQASGGLVNLVIIDGSPRALPEGTEGEAPPNTGEYFTIQIRRGDELLEQYENLTMNREPAAQIATYALAALRNSMYVSVEDITQSGQPLARRPVNGQYELAPPIVAAPPDRFSQNLEGVRDDRTGVRGIFEVDEITMLACPDVMRAYQEQILNLDQVHGIIELMISMCEGSASGDIPNPPNRMVVLDAPPDAVKPQQVVEWLNRFNRRSMFAALYYPWIKVPNPRDRGNPILVPPCGHVMGVWARTDETRGVYKAPANEVPRGVIGLGYETNFREQELLNPLGINCIRSFPNRGIRIWGARTLVEPDKTEWRYISVRRLISYIEKSLELGTQWVVFEPNDQDLWARVTRTVSNFLERIWREGALFGASPAQAFYVKCDEELNPPETRILGRLYIEVGVCPVRPAEFVVFRISQWNGIEDSE
>NC_010628.1|WP_012407860.1|1331940_1332396_+|phage-tail-protein
MAGEFLTSCKFYFEADGITDKFIKEISGLGVENTPAQEVHGSSKGAKLMRQATPTVVKFTNITVKVIATDDIDLYKWYQDCNEDMGDPRKWSQKRKTGSVVAYDQQGSEKARWNIVNCYPCKYTGPTLTASGGDMANETVELVHEGIKRIK
>NC_010628.1|WP_012407861.1|1332500_1333058_+|phage-tail-protein
MASLRATQERHYELRITNYLTVVQSASRIPEVLTAHRFYLELTLEGQNDANCFFLECQGFKRTQEVIEISEVTSQTWGKKGQSKGQVVRTKLPSNPKSGNLTLRRGTTNSMDFWKWFEKVEKGNWSEQRRLVALSIYNQANQEIARFELAGAWPASYKIADVNARSHDIEIEEVEVAFEEFKRVK
>NC_010628.1|WP_012407862.1|1333069_1333417_+|hypothetical-protein
MFPTEFEFTLPKGYLDSEGNLHRKGVMRLSTAIDEIAPLRDPRVKANPVYATIIILSRVITHLGALSEVTPAIVENFFAQDLNYLQDFYRRINGLEGETSIPEDTINSPEALIHN
>NC_010628.1|WP_012407863.1|1333693_1334077_+|hypothetical-protein
MPRKKDTLSTEFAFTLPRGLSDSEHRIHRHGVMRLATAKDEILVQQERRVQENPAYGVLVMLARVITRLGSLNSVSPDLLEELLLHDIAYLREFYNRINQQGDVHIPTQCPHCNTQFSVELELAGES

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Crispr_ID: NC_010628_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_7

1601537-1605868

Orphan

A:N

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CRT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	PILER-CR
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CRISPRCasFinder

59 spacers

The CRISPR arrays of NC_010628_7

>merge|NC_010628|7|1601537-1605868|CRT,PILER-CR,CRISPRCasFinder
ACACAACTTTTAGTTTTTACTATTGATAAATTGCAATCCCCAGCCAGCAGGAACCCCAAACGGACTGTAAACCAGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATTCCCAAGAAAAATACGGCTATCAATATCAAGATAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATAAGTTTGCTCTGATGCCATGCGATCGCTCCTTTGAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCTTTCCTTGTCATCCTGTTCCCACTTACTATCCTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTTTGTCCCCCAAGGCGGTATAGGACTTGAATAAGGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCCCTAGTGGATGGTCAGGGTGTCCTATTCAGCAGAATAAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATAAGGAGCGATCGCGTCTGATTTGATGAAGTTCCAGTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATAGGCTTGGTAAAACTCAGGGGCACAAAGGTAGCCTTGGGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCTTATATGGTGAGGCTTCAGGGCTAGTTCCCTTCATAAAATCCGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATATCTTCTTAGCCCACAGCTAGGGCAAATCAAGAATATGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATGAGAACGCCGCCCATCTGGGCTGTAAAGAGTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTCGTAGTGGTCGATCGCTGGATGCCTTCTAGTAAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCAATTACATCCATCTTTACCTGAGCCTAAGAATTTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATATTGGTTTTTTGTAAAAAGCACGTCAACTAGTGATTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATGTCCGCAGGTCTTCAGATAATCGAACAATTGGTTTGTCCTTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCATCCAAGCGCGTTCTGCTTCGTTGAGTTGTTCAAAGCCAGGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTTGGATAATTGCACCGCGAAGCATTTAAGCACTGGGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTCCGCGTTTCATTCGCTTGTTAGCGATCGCAGCTAAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATAAGGTCAACATCAGCAAGAGTCAGCATACCGCTAAAAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTATTTATTTCAAAGAAAAGATGCGGGTATTGATGTAAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCCTGCGTATTGGCTTCGCTACACTTCTGGTAGTGAGGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATACGCGATCGCGGTTCGAGCATTTCCCCGTTATGTTCAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCACTGATGTGCCAAAGGTAGATAGGCCCAAGAGATGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCATTTCAAACTCAGAAAACTGAAGCTTTGCCATGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTTGAATGTCACTTTGTACAATCAAGTCTGTCACGTCTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTTGACCCCTCCCCCCACTGTGTGGTATGGTTGAATGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTTGTCAGTTCAAGCTGCTGTTCGTCAGGCTACTGTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATAACTCGAAAGCCCCGCGAGGAAGCTTATCAGTTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCTTATAGCGATCCGTTTCACCTTCACTACCGACACGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATGATGATTTTTGCTGCTGTCCCCGTCATTTACCTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATATTACATTTTGTTTTTGTGCTGAGGCAATTCTTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCGGAGACTAAAGTTAGACTGAGCGTCTAAAACACCTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCTTTACATCTTCACCTTGTCGTTCACTGCGATGTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATATTAACGACCATCCAAGTAGCAACAATAGCTATAAAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCCCCGGTGCAGAGGGGAGTGAGCTAGTTGCTATCAAAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTTTAATCCGCCCTGACAAAACCCTATACCCTCAAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCACCCAGGGGATTTCCTTCCTGCGATCGTGGAATTTTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATAGAATCCTCGGAGTATTCCGTCTGGGGACGTATTGGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTTAATAGAGCTAATCAAAAGGGTGCAGGGCGATCGCCCTCGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTTTTTTAATAGTATCACCAGCATCATTGTCATACTCGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATAAATTTAGCTTGCAGGCGATCGCTGTGAGCTAAGGAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTCTCCTCCTCAATATCTTTAAGTTTTAGTTTCTTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATAAGGGTTACACCCCAGGACTGCCCCAATTTATCCAAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCTGCCCTTCCCAATGACTGGATTGGGAAAAAGATGGATGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCGGGCATCAACTGTCATTCTGACCGATCGCCCATCAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATACCGTTCAACTGCCTCTGCCACGCCCCCTCGTTAGGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTTATTTGCAAGTGTGTGCTTTACCGCAGCTGCATACGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCTTAGTGTATCCTCCCACCTCAACATATTCACCATGCATCTGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCACTTGCGATCGCTTGCTACTTTCCCGCCAAGCGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATGCGAAAAAAGATTCTACTACGGGGAAGTTTCCTAGGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATGTAATTGCAACCGAAGATTGCACTTTATGACTAAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTTTACATGTCAAGACTTGCTAAAGATAAAGAGTTAAAGGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATATTGCGGCATTGAGGCATTCCAAAATGATTATTCATGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTATAAAGTATGGAGTGCTGGCGAGTATTCCGAAAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATGTTGGCGGCCAGCAGGGTCATCGACATCCTAAAAGAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTATCTAAAGCAGTTTTAGGGTTCATAGCGACATTAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTAATATTGAAGGCTATTTTGATATCCTCACCAGAGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATCACAGGCTTCTGCTATTTTCATGATTCTGATTGCGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAATTCTATCAATTGTATGAATAGCGATCGCCATATCCGTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT

>NC_010628|7|3|1601537-1605868|CRT
ACACAACTTTTAGTTTTTACTATTGATAAATTGCAAT	CCCCAGCCAGCAGGAACCCCAAACGGACTGTAAACCA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TCCCAAGAAAAATACGGCTATCAATATCAAGATA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGTTTGCTCTGATGCCATGCGATCGCTCCTTTGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTTCCTTGTCATCCTGTTCCCACTTACTATCCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTGTCCCCCAAGGCGGTATAGGACTTGAATAAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CCCTAGTGGATGGTCAGGGTGTCCTATTCAGCAGAATAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGGAGCGATCGCGTCTGATTTGATGAAGTTCCAGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AGGCTTGGTAAAACTCAGGGGCACAAAGGTAGCCTTGG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTATATGGTGAGGCTTCAGGGCTAGTTCCCTTCATAAAATCC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATCTTCTTAGCCCACAGCTAGGGCAAATCAAGAATAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GAGAACGCCGCCCATCTGGGCTGTAAAGAGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCGTAGTGGTCGATCGCTGGATGCCTTCTAGTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CAATTACATCCATCTTTACCTGAGCCTAAGAATTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTGGTTTTTTGTAAAAAGCACGTCAACTAGTGATT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GTCCGCAGGTCTTCAGATAATCGAACAATTGGTTTGTCCTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CATCCAAGCGCGTTCTGCTTCGTTGAGTTGTTCAAAGCCAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGGATAATTGCACCGCGAAGCATTTAAGCACTGG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCCGCGTTTCATTCGCTTGTTAGCGATCGCAGCTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGGTCAACATCAGCAAGAGTCAGCATACCGCTAAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TATTTATTTCAAAGAAAAGATGCGGGTATTGATGTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CCTGCGTATTGGCTTCGCTACACTTCTGGTAGTGAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ACGCGATCGCGGTTCGAGCATTTCCCCGTTATGTTCA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACTGATGTGCCAAAGGTAGATAGGCCCAAGAGAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CATTTCAAACTCAGAAAACTGAAGCTTTGCCAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGAATGTCACTTTGTACAATCAAGTCTGTCACGTCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGACCCCTCCCCCCACTGTGTGGTATGGTTGAAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGTCAGTTCAAGCTGCTGTTCGTCAGGCTACTGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AACTCGAAAGCCCCGCGAGGAAGCTTATCAGTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTATAGCGATCCGTTTCACCTTCACTACCGACAC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GATGATTTTTGCTGCTGTCCCCGTCATTTACCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTACATTTTGTTTTTGTGCTGAGGCAATTCTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CGGAGACTAAAGTTAGACTGAGCGTCTAAAACACCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTTACATCTTCACCTTGTCGTTCACTGCGATGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTAACGACCATCCAAGTAGCAACAATAGCTATAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CCCCGGTGCAGAGGGGAGTGAGCTAGTTGCTATCAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTAATCCGCCCTGACAAAACCCTATACCCTCAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACCCAGGGGATTTCCTTCCTGCGATCGTGGAATTTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AGAATCCTCGGAGTATTCCGTCTGGGGACGTATTG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTAATAGAGCTAATCAAAAGGGTGCAGGGCGATCGCCCTC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTTTTAATAGTATCACCAGCATCATTGTCATACTC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAATTTAGCTTGCAGGCGATCGCTGTGAGCTAAGGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCTCCTCCTCAATATCTTTAAGTTTTAGTTTCTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGGGTTACACCCCAGGACTGCCCCAATTTATCCAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTGCCCTTCCCAATGACTGGATTGGGAAAAAGATGGAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CGGGCATCAACTGTCATTCTGACCGATCGCCCATCA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ACCGTTCAACTGCCTCTGCCACGCCCCCTCGTTAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTATTTGCAAGTGTGTGCTTTACCGCAGCTGCATAC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTAGTGTATCCTCCCACCTCAACATATTCACCATGCATCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACTTGCGATCGCTTGCTACTTTCCCGCCAAGC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GCGAAAAAAGATTCTACTACGGGGAAGTTTCCTAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GTAATTGCAACCGAAGATTGCACTTTATGACTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTACATGTCAAGACTTGCTAAAGATAAAGAGTTAAAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTGCGGCATTGAGGCATTCCAAAATGATTATTCAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TATAAAGTATGGAGTGCTGGCGAGTATTCCGAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GTTGGCGGCCAGCAGGGTCATCGACATCCTAAAAGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TATCTAAAGCAGTTTTAGGGTTCATAGCGACATTA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TAATATTGAAGGCTATTTTGATATCCTCACCAGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACAGGCTTCTGCTATTTTCATGATTCTGATTGC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCTATCAATTGTATGAATAGCGATCGCCATATCC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT

>NC_010628|7|4|1601611-1605868|PILER-CR
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TCCCAAGAAAAATACGGCTATCAATATCAAGATA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGTTTGCTCTGATGCCATGCGATCGCTCCTTTGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTTCCTTGTCATCCTGTTCCCACTTACTATCCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTGTCCCCCAAGGCGGTATAGGACTTGAATAAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CCCTAGTGGATGGTCAGGGTGTCCTATTCAGCAGAATAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGGAGCGATCGCGTCTGATTTGATGAAGTTCCAGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AGGCTTGGTAAAACTCAGGGGCACAAAGGTAGCCTTGG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTATATGGTGAGGCTTCAGGGCTAGTTCCCTTCATAAAATCC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATCTTCTTAGCCCACAGCTAGGGCAAATCAAGAATAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GAGAACGCCGCCCATCTGGGCTGTAAAGAGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCGTAGTGGTCGATCGCTGGATGCCTTCTAGTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CAATTACATCCATCTTTACCTGAGCCTAAGAATTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTGGTTTTTTGTAAAAAGCACGTCAACTAGTGATT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GTCCGCAGGTCTTCAGATAATCGAACAATTGGTTTGTCCTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CATCCAAGCGCGTTCTGCTTCGTTGAGTTGTTCAAAGCCAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGGATAATTGCACCGCGAAGCATTTAAGCACTGG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCCGCGTTTCATTCGCTTGTTAGCGATCGCAGCTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGGTCAACATCAGCAAGAGTCAGCATACCGCTAAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TATTTATTTCAAAGAAAAGATGCGGGTATTGATGTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CCTGCGTATTGGCTTCGCTACACTTCTGGTAGTGAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ACGCGATCGCGGTTCGAGCATTTCCCCGTTATGTTCA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACTGATGTGCCAAAGGTAGATAGGCCCAAGAGAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CATTTCAAACTCAGAAAACTGAAGCTTTGCCAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGAATGTCACTTTGTACAATCAAGTCTGTCACGTCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGACCCCTCCCCCCACTGTGTGGTATGGTTGAAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGTCAGTTCAAGCTGCTGTTCGTCAGGCTACTGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AACTCGAAAGCCCCGCGAGGAAGCTTATCAGTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTATAGCGATCCGTTTCACCTTCACTACCGACAC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GATGATTTTTGCTGCTGTCCCCGTCATTTACCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTACATTTTGTTTTTGTGCTGAGGCAATTCTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CGGAGACTAAAGTTAGACTGAGCGTCTAAAACACCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTTACATCTTCACCTTGTCGTTCACTGCGATGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTAACGACCATCCAAGTAGCAACAATAGCTATAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CCCCGGTGCAGAGGGGAGTGAGCTAGTTGCTATCAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTAATCCGCCCTGACAAAACCCTATACCCTCAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACCCAGGGGATTTCCTTCCTGCGATCGTGGAATTTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AGAATCCTCGGAGTATTCCGTCTGGGGACGTATTG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTAATAGAGCTAATCAAAAGGGTGCAGGGCGATCGCCCTC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTTTTAATAGTATCACCAGCATCATTGTCATACTC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAATTTAGCTTGCAGGCGATCGCTGTGAGCTAAGGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCTCCTCCTCAATATCTTTAAGTTTTAGTTTCTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGGGTTACACCCCAGGACTGCCCCAATTTATCCAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTGCCCTTCCCAATGACTGGATTGGGAAAAAGATGGAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CGGGCATCAACTGTCATTCTGACCGATCGCCCATCA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ACCGTTCAACTGCCTCTGCCACGCCCCCTCGTTAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTATTTGCAAGTGTGTGCTTTACCGCAGCTGCATAC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTAGTGTATCCTCCCACCTCAACATATTCACCATGCATCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACTTGCGATCGCTTGCTACTTTCCCGCCAAGC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GCGAAAAAAGATTCTACTACGGGGAAGTTTCCTAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GTAATTGCAACCGAAGATTGCACTTTATGACTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTACATGTCAAGACTTGCTAAAGATAAAGAGTTAAAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTGCGGCATTGAGGCATTCCAAAATGATTATTCAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TATAAAGTATGGAGTGCTGGCGAGTATTCCGAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GTTGGCGGCCAGCAGGGTCATCGACATCCTAAAAGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TATCTAAAGCAGTTTTAGGGTTCATAGCGACATTA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TAATATTGAAGGCTATTTTGATATCCTCACCAGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACAGGCTTCTGCTATTTTCATGATTCTGATTGC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCTATCAATTGTATGAATAGCGATCGCCATATCC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT

>NC_010628|7|7|1601611-1605868|CRISPRCasFinder
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TCCCAAGAAAAATACGGCTATCAATATCAAGATA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGTTTGCTCTGATGCCATGCGATCGCTCCTTTGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTTCCTTGTCATCCTGTTCCCACTTACTATCCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTGTCCCCCAAGGCGGTATAGGACTTGAATAAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CCCTAGTGGATGGTCAGGGTGTCCTATTCAGCAGAATAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGGAGCGATCGCGTCTGATTTGATGAAGTTCCAGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AGGCTTGGTAAAACTCAGGGGCACAAAGGTAGCCTTGG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTATATGGTGAGGCTTCAGGGCTAGTTCCCTTCATAAAATCC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATCTTCTTAGCCCACAGCTAGGGCAAATCAAGAATAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GAGAACGCCGCCCATCTGGGCTGTAAAGAGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCGTAGTGGTCGATCGCTGGATGCCTTCTAGTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CAATTACATCCATCTTTACCTGAGCCTAAGAATTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTGGTTTTTTGTAAAAAGCACGTCAACTAGTGATT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GTCCGCAGGTCTTCAGATAATCGAACAATTGGTTTGTCCTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CATCCAAGCGCGTTCTGCTTCGTTGAGTTGTTCAAAGCCAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGGATAATTGCACCGCGAAGCATTTAAGCACTGG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCCGCGTTTCATTCGCTTGTTAGCGATCGCAGCTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGGTCAACATCAGCAAGAGTCAGCATACCGCTAAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TATTTATTTCAAAGAAAAGATGCGGGTATTGATGTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CCTGCGTATTGGCTTCGCTACACTTCTGGTAGTGAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ACGCGATCGCGGTTCGAGCATTTCCCCGTTATGTTCA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACTGATGTGCCAAAGGTAGATAGGCCCAAGAGAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CATTTCAAACTCAGAAAACTGAAGCTTTGCCAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGAATGTCACTTTGTACAATCAAGTCTGTCACGTCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGACCCCTCCCCCCACTGTGTGGTATGGTTGAAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTGTCAGTTCAAGCTGCTGTTCGTCAGGCTACTGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AACTCGAAAGCCCCGCGAGGAAGCTTATCAGTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTATAGCGATCCGTTTCACCTTCACTACCGACAC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GATGATTTTTGCTGCTGTCCCCGTCATTTACCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTACATTTTGTTTTTGTGCTGAGGCAATTCTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CGGAGACTAAAGTTAGACTGAGCGTCTAAAACACCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTTACATCTTCACCTTGTCGTTCACTGCGATGT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTAACGACCATCCAAGTAGCAACAATAGCTATAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CCCCGGTGCAGAGGGGAGTGAGCTAGTTGCTATCAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTAATCCGCCCTGACAAAACCCTATACCCTCAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACCCAGGGGATTTCCTTCCTGCGATCGTGGAATTTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AGAATCCTCGGAGTATTCCGTCTGGGGACGTATTG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTAATAGAGCTAATCAAAAGGGTGCAGGGCGATCGCCCTC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTTTTAATAGTATCACCAGCATCATTGTCATACTC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAATTTAGCTTGCAGGCGATCGCTGTGAGCTAAGGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCTCCTCCTCAATATCTTTAAGTTTTAGTTTCTT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	AAGGGTTACACCCCAGGACTGCCCCAATTTATCCAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTGCCCTTCCCAATGACTGGATTGGGAAAAAGATGGAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CGGGCATCAACTGTCATTCTGACCGATCGCCCATCA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ACCGTTCAACTGCCTCTGCCACGCCCCCTCGTTAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTATTTGCAAGTGTGTGCTTTACCGCAGCTGCATAC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CTTAGTGTATCCTCCCACCTCAACATATTCACCATGCATCT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACTTGCGATCGCTTGCTACTTTCCCGCCAAGC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GCGAAAAAAGATTCTACTACGGGGAAGTTTCCTAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GTAATTGCAACCGAAGATTGCACTTTATGACTAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TTTACATGTCAAGACTTGCTAAAGATAAAGAGTTAAAG
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	ATTGCGGCATTGAGGCATTCCAAAATGATTATTCAT
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TATAAAGTATGGAGTGCTGGCGAGTATTCCGAAA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	GTTGGCGGCCAGCAGGGTCATCGACATCCTAAAAGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TATCTAAAGCAGTTTTAGGGTTCATAGCGACATTA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TAATATTGAAGGCTATTTTGATATCCTCACCAGA
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	CACAGGCTTCTGCTATTTTCATGATTCTGATTGC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT	TCTATCAATTGTATGAATAGCGATCGCCATATCC
GTTTCAATCCCTAATAGGGATTTTGAGAAATTGCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012408061.1\|1612716_1614054_-\|transporter	unknown	unknown	gnl\|CDD\|238536
NC_010628.1\|WP_012408054.1\|1599665_1601243_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|226070
NC_010628.1\|WP_041565237.1\|1588519_1588660_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408049.1\|1592900_1593206_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408060.1\|1612424_1612628_+\|high-light-inducible-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408050.1\|1593476_1595705_-\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226703
NC_010628.1\|WP_012408063.1\|1618183_1619374_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_010628.1\|WP_012408052.1\|1596787_1598068_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NC_010628.1\|WP_041565238.1\|1606357_1607188_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NC_010628.1\|WP_012408051.1\|1595710_1596520_-\|DUF928-domain-containing-protein	unknown	unknown	gnl\|CDD\|368720
NC_010628.1\|WP_012408058.1\|1608426_1611543_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226167
NC_010628.1\|WP_012408048.1\|1592194_1592551_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408064.1\|1619432_1620119_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|274024
NC_010628.1\|WP_012408046.1\|1588836_1591752_+\|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|235751
NC_010628.1\|WP_012408047.1\|1591748_1592096_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369571
NC_010628.1\|WP_041565242.1\|1620259_1621057_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|376672
NC_010628.1\|WP_041565239.1\|1614166_1614784_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_010628.1\|WP_012408059.1\|1612170_1612383_+\|high-light-inducible-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565955.1\|1598888_1599440_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408057.1\|1607198_1608140_-\|phospholipase/carboxylesterase	unknown	unknown	gnl\|CDD\|226040

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012408061.1\|1612716_1614054_-\|transporter	gnl\|CDD\|238536	cd01116, P_permease, Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.	2.4707e-98
NC_010628.1\|WP_012408054.1\|1599665_1601243_+\|alkaline-phosphatase	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	0
NC_010628.1\|WP_012408064.1\|1619432_1620119_-\|ribonuclease-III	gnl\|CDD\|274024	TIGR02191, Ribonuclease_3, ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. [Transcription, RNA processing].	5.09111e-85
NC_010628.1\|WP_041565242.1\|1620259_1621057_-\|NYN-domain-containing-protein	gnl\|CDD\|376672	pfam01936, NYN, NYN domain. These domains are found in the eukaryotic proteins typified by the Nedd4-binding protein 1 and the bacterial YacP-like proteins (Nedd4-BP1, YacP nucleases; NYN domains). The NYN domain shares a common protein fold with two other previously characterized groups of nucleases, namely the PIN (PilT N-terminal) and FLAP/5' --> 3' exonuclease superfamilies. These proteins share a common set of 4 acidic conserved residues that are predicted to constitute their active site. Based on the conservation of the acidic residues and structural elements Aravind and colleagues suggest that PIN and NYN domains are likely to bind only a single metal ion, unlike the FLAP/5' --> 3' exonuclease superfamily, which binds two metal ions. Based on conserved gene neighborhoods Aravind and colleagues infer that the bacterial members are likely to be components of the processome/degradsome that process tRNAs or ribosomal RNAs.	1.18656e-12
NC_010628.1\|WP_012408050.1\|1593476_1595705_-\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	3.11551e-148
NC_010628.1\|WP_012408063.1\|1618183_1619374_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.40066e-51
NC_010628.1\|WP_012408052.1\|1596787_1598068_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	2.86579e-173
NC_010628.1\|WP_041565238.1\|1606357_1607188_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	2.3025e-74
NC_010628.1\|WP_012408051.1\|1595710_1596520_-\|DUF928-domain-containing-protein	gnl\|CDD\|368720	pfam06051, DUF928, Domain of Unknown Function (DUF928). Family of uncharacterized bacterial protein.	2.81362e-91
NC_010628.1\|WP_012408058.1\|1608426_1611543_-\|hypothetical-protein	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	3.01639e-06
NC_010628.1\|WP_012408046.1\|1588836_1591752_+\|glycerol-3-phosphate-acyltransferase	gnl\|CDD\|235751	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.	2.16285e-93
NC_010628.1\|WP_012408047.1\|1591748_1592096_+\|cupin-domain-containing-protein	gnl\|CDD\|369571	pfam07883, Cupin_2, Cupin domain. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).	8.01278e-12
NC_010628.1\|WP_012408057.1\|1607198_1608140_-\|phospholipase/carboxylesterase	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	5.35545e-52
NC_010628.1\|WP_041565239.1\|1614166_1614784_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.85202e-06

>NC_010628.1|WP_012408054.1|1599665_1601243_+|alkaline-phosphatase
MVDYRNFEQFLHSRMKRRNLIIGAGALSGLAIANQFSPQRAIAKDRFSDYPFTLGIASGDPDPNSVVIWTRLAPDLLNGGGMPPKNVPIHWEVSTDEQMKRIVSRGTVVATPELAHSVRVVVEGLQSDTWYWYRFFVKDYSSPIGRTRTAPLANGYLSKLNFALVSCQNYQQGFYTAYKYLAQDDLDLVVHVGDYIYEGGISTTGPRQHNSSEIFTLEDYRNRHALYKSDTNLQAAHAAFPWIVTWDDHEVENNYANFISEIDSEPDQNPEIFLQRRAVAYQAYYEHMPLRPSQRPVGPNVQLYRRLNFGNLATFHVLDTRQYRTDQPCDDGTKPRPCGLEPNGTITGKAQEEWLYNGLDKSQAKWNVLAQQVIVAQVDRTAGPGATYSMDKWDGYVASRDRLLRFLEQRKPSNPVVLTGDVHNHWAINLKADFNNPLSPTVGSEFVCSSISSGGNGSDTIPSYIAENPQVKFYNNRRGYVRCNVTPTTWKTDYLAVSEVETPFGTISKKASFVVTDGNPEIKPA
>NC_010628.1|WP_041565955.1|1598888_1599440_+|hypothetical-protein
MKLVPKLVLATATLTLGFATVDAKSVSAAIINYAFTVDSPITKGNGFFSFDDSTLSNDYTPEATIKSLFFQFDGDSTIYTEQDDPNYPDFPVTFQTTSLTGQTSFALDYLFNDKSNPASSTSYEIIGEDFTIFSRTSPDAEPISGKVSYRQVPEPTPLVGALFACSLGLMMKRKVTLMKKVKI
>NC_010628.1|WP_012408052.1|1596787_1598068_+|3-phosphoshikimate-1-carboxyvinyltransferase
MDTIEIPALNRPVDATVEIPGSKSLTNRALLVAALAQGDSILENALFSEDSEYFAKCLEQLGIPITLNPHLAQIQLAGRGGEIPAKQADLFVGLSGTTARFISALVALGNGEYRLDGVPRMRERPMGDMLTVLETGGATVNFEGNSGFMPYTVYSQGFAGGNFCLKANQTSQQLSALLMIAPYAQQDTIFEVEGTLVSLSYIKMTCRLMADFGVEVIQIGDNQFQIKAGQRYQAQHYTVEPDASNASYFFAAAAVTGGRVRVKHLTKQSCQGDILWLNVLEQMGCQIKDSDDYTEVTGPKQLQGIDIDMNDISDLVQTLAAIAPFASSPITIRNVEHIRYKETDRIKAVVTELRRLGVQVEEFPDRLKIEPGPITPAEIETYHDHRMAMAFAVTGLKVPGIVIKDPGCTAKTFPDYFTRFFQMLEQ
>NC_010628.1|WP_012408051.1|1595710_1596520_-|DUF928-domain-containing-protein
MKRIKPFLYFLPFSLPLGLLSALTAQVHAQSYHPNKTWQISQAFKPPQRGKPPASAGGSTRGGSCLIGKKLITPLMPPDKLGLTFAQHPTFFWYLPPFQVKTAKFVLLAEDQNVFYETSFTLPDKPGIISFKLPESSPALALGKTYHWYLTIVCNTQDSSDNPTVEGWVERTQPGSSLSEALAKANVYKLPTIYAEAGIWHEALTSLVQLRRTEPNNFKTRLDWRQFFKSVGLSAIASEPLIDCCTSKKEGHGAKAEFPTPHSLFPTQH
>NC_010628.1|WP_012408050.1|1593476_1595705_-|adenylate/guanylate-cyclase-domain-containing-protein
MWAKLKSQIWQWRGVLLAVPNITALVIALRLTGLLQLLELAALDQFFLLRPQESPDTRIVIVEINEADVRKQGQWPMSDGKLASLLEKIKQQQPRAIGLDIYRDLPVNPGHEALLKVFKSTPNLIGVQKVSDTVDSSAVDSSPELKRLAQIGSNDLPIDGDGKIRRALLYVNLKNDEILESFGLKLALLYLKPEGITAKPAATNSNYLQLKQGVFPIFEANDGGYVRADAGSYQVLLNYRGRIQQFTKVSLGEVQDKPIPPNLMRGKVVLIGATAESLKDLFYTPYSSNVLTDPERMAGITIHANLISQILSTAMDDRSSIECLPEPLEWLSILIWSIIGASLCWLQRHSSNQKTLMAVSVLLAGGGLIGGSFLAFLAGWWIPVVPSLLAFAGSAIALTQYIAQSATEMRKTLGRYLTDEIVSNILETPSGLKLGGERRKVTVLVSDLRGFSAISEQLPPEEVVKILNLYLGTMTDVINQYKGTINEFMGDGIFVIFGAPISRIDDSQRAIACAIAMQLAMQQVNEKNQQMNFPILEMGIGMNTGEAVAGNVGSQKRAQYTVIGSHVNLAARIESYTVGGQILVSENTCKDANIDLQIAGQLQIEPKGMRHPVTICEIRGIGGKYNLFLPDDDDEMIVLNQEVPVKYTILQGKYAVGKVFLGALISLSEKGAQLRSLDSLEILSNLKLKLLIEAEMPTEEEHIYAKVIQQSNVDEHLFLLRFTAVPPKAIAILNALRQPESS
>NC_010628.1|WP_012408049.1|1592900_1593206_-|hypothetical-protein
MTNINNFQKLVELANEYGIICQPTPEECLIASLPGEDDFLLAFTWSGVVEGEPPEHELIAISVQDIVKEVTVAAWQIPIYLFGNVLRQAQMLVAAHKDFFS
>NC_010628.1|WP_012408048.1|1592194_1592551_-|hypothetical-protein
MNKFLLSLLSSPVLISSILSMGVMLNQAQAIEPEPATQSTDRLSCIRNKHKVGLVCARASVLAQIPNYQREIEFSQEDAPMLEFNDEESNVAINLFGCDCPACINSLRQMRGATPLVY
>NC_010628.1|WP_012408047.1|1591748_1592096_+|cupin-domain-containing-protein
MITNSLKDLPEESVSHNPEIKKKVMLRFGDLPHLTNFSQARFAPGQTAPGHAHQDMCEVFFVEAGSGVIHIDGTEYPLLPGNCVAIEVGEVHEVVNSGSTELVLTYFGLRVEKSA
>NC_010628.1|WP_012408046.1|1588836_1591752_+|glycerol-3-phosphate-acyltransferase
MFEPWGVLVILIICPLLGGLPLIAWIAYALTGKQLSQVGTRNISVSAAFYHGGKFVGILAVLSEAFKGIAAVFLTRLFFPEGSFWELIALIALVIGRYWIGRGAGTTNVVWGFVVHDPLVAIFVSFFAGISFTILQSKQAVKYGVLLLFPLFVAILHLSDIPRMLAAVALAGLMAWIYAKIPDDMNLPAQEAQTESQAMLEFLRGDVYNGLRQRAMVSLDEELDAAIVGEKAATLSQIKRWGYPVPKGWVLAPIDDPKVLTEFLQPSELSPLVVRSSAIGEDSEHSSAAGQYETVLNVTSPEALQQAIAQVQASYNHPSAVQYRRDRGLNDTAMAVLIQQQVQSVYSGVAFSRDPITQQGDAIIIEALPGSPTQIVSGKVTPEQYRAFVVETEKSSSVQLEGEGRVPQALIKQVAYLAYRLEKRYHGTPQDIEWSYDGQTLWVLQSRPITTLLPIWTRKIAAEVIPGVIHPLTWSINRPLTCGVWGEFFTIVLGDRALGLDFNETATLHYSRAYFNASLLGNIFLRMGLPPESLEFLTRGAKLSKPSLQSTWENLPGLGKLLKRELNLEKDFKQDYHQRFIPGLSQLAQENVDNLEPAKLLIRIDFILELLRHGTYYSILAPLSAALRQAIFRVKDGQIDNSVTPEVAALRSLSAIATDAKQVLLEFEPQQVFEQLKQTPEGEKILQEFDELLQDYGYLSEVGTDISVPTWRENPQMIKQMFVQLMQGNEPRSGAKDAINSIFAGKRKRSFVQRRVDIKGRVTEVYSRLLAELRWSFVALEKIWLKSGLLQKAGDIFFLNFDEVRRLVVGDDFRLIEELDKLVESRRSQFVQDSEIIQVPLLVYGNTPPHPLAPSALYSDQILQGIGASHGQAEGRVKVLRNLQDVPEIDRDTILVVPYTDSGWAPLLLRAGGLIAEVGGRLSHGAIVAREYGIPAVMDVRGATWLLQDGQRVRIDGSRGIVELSNDLRPE
>NC_010628.1|WP_041565237.1|1588519_1588660_+|hypothetical-protein
MSDLNRGIMKFEGADSPKVVTISTVLLLGSIAALIIWALQAAYALN
>NC_010628.1|WP_041565238.1|1606357_1607188_+|dienelactone-hydrolase-family-protein
MKEITRRKFIATSTLATGFALAVQPISAQVTATDAKGLVAGAVKIPVKDGEIPAYRAAPATGENFPIVLVIQEIFGVHEHIQDVTRRFAQLGYLAIAPELFIRQGDVTKLSSIDEIRPIVAKVPDAQVLSDLDATVKWAVKSAKGNANKLAITGFCWGGRITWLYAAHNPKVKAGVAWYGRLVGDATELQPKYPIDIASALTVPILGLYGGKDTGIPLDTVEQMRDHLKSSSSKSEIIVYPDAPHAFFADYRPSYREKDAKDGWKRLLAWFKQNGV
>NC_010628.1|WP_012408057.1|1607198_1608140_-|phospholipase/carboxylesterase
MNIYQNYRILKKVVIVLLGVTLLTACDSIQAEEKNITKAKILSGDNYGELYDQGKLRTYYLYTPKSYNPDRPMPLVLVFHGDDGNGRSISNVTRFNELADKKGFIVVYPDGIDQKWSLRGNAQGRVDDVSFVNALINHLQQQINIDSHKIYATGFSRGAILTQALACKLPDKISGFASVAGSLPVRLKSNCQPRTSISMLTINGTNDRDVLYEGDDRTQRGALLSISDMVDFWRSHDQCTSSNKSPDFAEDKVKTAIYTGCSGNSEVWQLAVINGGHFWPGGSSTDKNLNKFNANLGLNASETIWNFFQSHSS
>NC_010628.1|WP_012408058.1|1608426_1611543_-|hypothetical-protein
MFQSTEIMLGLYKPLLWLAQVPVDPSNVTPAQASVLTSGPRFFVALISGVILAFAFQLVLTNLSLAAGISYLGHSSDSDSDSGEVGSLGGSIRKIGTAVGIWTLVTVTIALLIACFLAVKLSLVILDPGLGAILGLVIWGAYFLLLVWVSSTTVGSLIGSVVNTATSGFQAIMGTATAALGAKAVNNQVVATAEAAAAAVRRELGSGIDPGSIRENIEDYLDKLRPPELDVSKIRSDFENLLNDPQLKAIAGTPDIRNIDRQKFIDLVSSRTDLSKKDVTRIADTLYKVWQQVVSQQSPNEDRLGELMDYLKSVPAGQSKTDELNAKLDRLVAETRGSKESDQKAAPGPIQSSIQQALSALTATVLGRADLPDLDVEKILGSLTTAKEKVTQQADKLGLPTPSQPYSPIRSDVENYLYNTYAWQLSPERIAQEFRDVIYDPAADPGIVRRELERLSRNDFVKILQQRGLLTQSQIQRIADRLEVVRKDVLVTVTGIEEREIVQDLQRAVESYLLVTPKTDLTPEGIERNFKPLLQDPDADYETLTLRLAHIERQEIREILLERNDIQLYEVDSILDELEKQRDRVLIESKGLAEQAQYQAETLWLNVESYLRNTGKSELNPDAIRAEFKKLLEDPQAGISSIRARLSRFDRDTLVQLLSQRQDLSEDQVNQIINAAEESWHNIRHTPQAVVDKAKEQYDSVTTTIADYLRNTGKQELNPEGIQRDLTKLFENPKEGASALRRRLSQLDRDTLVKLLSQRQDLSEQQVNEIIDSTQTSIRNFIRAPRRLATRTQQRAETFKAYLEEYLRQTGKEELNPEGIKRDLQLLLHDPRVGVESFSDRLSHFDRSTIIALLKIREDMSDEEAARIADNIVSVRDQFVEQVRNIQRGIQDAIDGIFARIRNYLNSLDRPELNYDSIKRDVRTFFDDPQAGFDALRDRLSSFDRETLVAIMSSREDISEEDANRIIDQIERARNTVLQRAERIQQEAQRRLEQVKHQAQRQAEETRKAAATAAWWLFATASVSAVFSALGGALAARP
>NC_010628.1|WP_012408059.1|1612170_1612383_+|high-light-inducible-protein
MATQETRSSTDLPPVAPEYNGVDRNAFLFGWTPQAEIWNGRLAAIGFLAYLLWDLAGYSVLRDVLHLVGY
>NC_010628.1|WP_012408060.1|1612424_1612628_+|high-light-inducible-protein
METRSSTDLPPVAKAYNGVDRNAFLFGWTPQAEIWNGRLAAIGFLGYLLWDLAGYSVLRDVLHIISY
>NC_010628.1|WP_012408061.1|1612716_1614054_-|transporter
MDNWQAILSVITFTSVIILVMTEWIHLTIAALLGALLLVFTNVMTLEEAVGYIGNSHGTLGLFFGVMVLVRAFEPTKIFDYLATQILLLAKGQGKRLLLGIVAIVTPICAVLPNATTVMLLAPLIPPMAKEVGINFVPLLILMVFVANSAGLLTLVGDPATFIVGDAVNISFTDYLLELSLGGVIAVAIVIATLPFLFRKIWNTQLDNLEELPHPQINHPRALSFGAVIVFFVLLFFVVGETLPVPVSPAAAALLGSALALLLSHHSKIDSVNNILRDVDWSTLIFFMSIFVLIGGLEKTGVINGLSGILAAILGKNIILGSLVLLFFVGILSSVVPNIPLVVGMVPLLKQYIVTVGLAPAEVLAQDFQGQFPPEVLPLFYAMMFGATLGGNGTLVGASSNIVAAGISEQHGRRISFKTFLHYGIPVMLLQLLASALYMLFRFLL
>NC_010628.1|WP_041565239.1|1614166_1614784_-|universal-stress-protein
MLARLQSATGRNDLIEQMVLVPEPKKPFSKKPQKAKAVNLIVAYDASPNSHAALDIAFWIAHQTRLATNAQVTVQAVYVVEDNQSSQYPNILSFPQQPSLECQISEVSKSVTQVLTQPKLQTVVTPLQQADIILWQARSLAEEWQGCFKSHLRFGCISTELKKVVESEAADILFLGCNSVNHPMIEALGYNFPCAVLGIPSCIDE
>NC_010628.1|WP_012408063.1|1618183_1619374_+|HAMP-domain-containing-histidine-kinase
MDFSQVLAEKTDTIIDKWVTAVRKDRRIESADDLSYTAVKDHIPDVLQAMVTVLSKSQDSDIQSIVTASFQHGAIRAEQGFDPAEIAREYHLLRTVIFDAIHADLLKGTPVDIIRSMRLIDAIIDEAIARCFKSYVDERLRELQQLQLSLTLHNEELTRLMSANQEYLSQLAHELKHPLTSIIGYSDLFLRQQRRKTQIKDTSANLEHIERVLRNGRQLLHLINDVLELSRYEAGQIKLQLAPTDVSELINNICEMLEPLAVGKNLKVVVDCDRAPKELIIDPFQCQQIITNLISNAIRYTESGTIIIMCQVLENQRWAIAVSDTGIGIAPENQAQIFEPYFRVSFSDRPYLPDSTGLGLAIVSRLVKLLQGQINLVSEVGVGSTFTVIFPLQIES
>NC_010628.1|WP_012408064.1|1619432_1620119_-|ribonuclease-III
MHKILIFHNEKLLRHALTHRSYVHENPGEGEHNERLEFLGDALLNFLSGEYLYKCHPEMGEDELTRRRSALVDEKQLAKFAEEVGLDFRMRLGKGAILDGGYQNPNLLSSTFEAVLGAYYLDNDSNIEAVRAIIEPLFDSVDPKHIVVSRSNVDSKNRFQEWVQRNVTPNPPKYFTEQIGGPSHAPEFIAKVLVDEKIYGEGKGRNKKEAEKAAAEDALTKLKKQGLL
>NC_010628.1|WP_041565242.1|1620259_1621057_-|NYN-domain-containing-protein
MPHSDQSSKKQTSQQKNYVGIFADIQNVSLIKGKGHFLLEFAQSKGRIDCKNVYYNSHYINQVCTKNELEILGIKCVDVPDHSNNSADYRLMADCVKAVAFNPSLTTIILLSGDWDYAGLICILKSLGKKVKIFAQRGSESPKLIKLVGNDNFHFVDELPQLVANTNKTQPQNTDIVSQINYKEAIEYLIEAIKIASMQGKPTVFGRIDRLMRQRCANYQGYLSICTDDGKKFKSFSQFIDVAVKDGKVQKQNQKLFLTDLDTAA

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Crispr_ID: NC_010628_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_8

2043772-2043887

Orphan

A:N

Consensus_repeat	Method
GCTAACCCCGCGACGCTACGACTTACGGGTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_8

>merge|NC_010628|8|2043772-2043887|CRISPRCasFinder
GCTAACCCCGCGACGCTACGACTTACGGGTAAAGACAGTTGTTAATGAGACATTTAGCATGGATGAAAGCTACGTGTTCAACCGCTAACCCCGCGACGCTACGACTTATGGGTAAA

>NC_010628|8|8|2043772-2043887|CRISPRCasFinder
GCTAACCCCGCGACGCTACGACTTACGGGTAAA	GACAGTTGTTAATGAGACATTTAGCATGGATGAAAGCTACGTGTTCAACC
GCTAACCCCGCGACGCTACGACTTATGGGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_193372277.1\|2051726_2053787_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_010628.1\|WP_148220269.1\|2049968_2050532_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408353.1\|2044626_2044995_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370166
NC_010628.1\|WP_167315591.1\|2042421_2042595_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408344.1\|2036229_2038452_-\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|239168
NC_010628.1\|WP_041565274.1\|2042587_2042818_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408356.1\|2048665_2049007_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565276.1\|2049006_2049375_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565273.1\|2041762_2041954_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_148220268.1\|2038523_2039708_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NC_010628.1\|WP_012408359.1\|2050533_2050866_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408347.1\|2040519_2041770_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376671
NC_010628.1\|WP_012408350.1\|2042891_2043260_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408351.1\|2043343_2043691_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408346.1\|2039694_2040234_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408357.1\|2049337_2049952_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408352.1\|2044127_2044541_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408355.1\|2045553_2048289_+\|DUF3854-domain-containing-protein	unknown	unknown	gnl\|CDD\|227832
NC_010628.1\|WP_012408354.1\|2045096_2045393_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408348.1\|2041950_2042313_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_193372277.1\|2051726_2053787_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	1.01172e-14
NC_010628.1\|WP_012408347.1\|2040519_2041770_-\|hypothetical-protein	gnl\|CDD\|376671	pfam01935, DUF87, Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.	0.000390966
NC_010628.1\|WP_012408353.1\|2044626_2044995_-\|hypothetical-protein	gnl\|CDD\|370166	pfam08872, KGK, KGK domain. This presumed domain is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.	1.1988e-13
NC_010628.1\|WP_012408344.1\|2036229_2038452_-\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|239168	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NC_010628.1\|WP_012408355.1\|2045553_2048289_+\|DUF3854-domain-containing-protein	gnl\|CDD\|227832	COG5545, COG5545, Predicted P-loop ATPase and inactivated derivatives [General function prediction only].	3.86221e-75
NC_010628.1\|WP_148220268.1\|2038523_2039708_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.88948e-19

>NC_010628.1|WP_012408351.1|2043343_2043691_-|hypothetical-protein
MNLTDIKPVDIITHIEQNFNRAQATGLNSLIFLALREQTSIAYQHKEYCFEDIPEQIIAVCDSLDEYHLVFLGVEIASWLLGEKKTTKQEEVKNAQPIAIQAIDDQKQPTLLSDY
>NC_010628.1|WP_012408350.1|2042891_2043260_-|hypothetical-protein
MTDQQITDRAITNGRSTTNKSDRKGRPREWKEMADDPLSEGFDSHQAEYVVGRTQVGFGTLEPGQLFSRSKTGKSLYVKLNDGRAVCLDTRQPIEVSPTRRKTWQIWLVTLFNSTTATKADF
>NC_010628.1|WP_041565274.1|2042587_2042818_-|hypothetical-protein
MTQKPNPSNEIHRAGFPEGQLLGNGASAEECAEISAAYIEGKPLPVSENPVINRISERLTHTSGYGQYSDGVKNYD
>NC_010628.1|WP_167315591.1|2042421_2042595_-|hypothetical-protein
MTENNTTNPWLIAAIAISEELKKQPPEVQAESRRMSKKTYPQTWKAIREKEEEQEQE
>NC_010628.1|WP_012408348.1|2041950_2042313_-|hypothetical-protein
MADEQKIVVEVPSDRGYSPVASTAQVSRLEEFKKGWRNAIALPDNLADLAFDLTASLTIPALFSSSWVSLPLPSFIRWGVMVMLALSGVIACYLRQAIPEIETILLIRLGLIFVGVLLGL
>NC_010628.1|WP_041565273.1|2041762_2041954_-|hypothetical-protein
MSKKDIESAIISVLTDAWCPQDLAKNAASILSEYYPDNTLIGATEAEVRVVKQAQEYVRDSDD
>NC_010628.1|WP_012408347.1|2040519_2041770_-|hypothetical-protein
MTENLHPSQLHQHLQMYAYAKWSSWGSLLLTVGLLSLGASLPRQSKTWVLAASVGTLEVGRRHRQTAKLLRESLGDIDRASRLNFQALARTQTQTTAQLALTVGSFDQDWKPENLITDPVEYIQKKQKHVALVGGTGDGKSTFTQYLSSKIGGRVIVYDSDAKPDDWAWLDQADVIGRKGNFKAIDTAMGNDLKTLEELVELRGEGGDNAITGRERFMIAEEFPVLVDECDNSTPWIKRHAKRGRRYKQFICALAQNDTAENFGLQGDKDTLYSCFCLVRLGQFGRDYARTKLKDPQLEQWLKAGGKKRFMVDDCPCELDLSNWGTTTSAPVENSGGGNEEARSQSSVMNEYEQFILNWGQQHPGEVLKAAHLSRASRLFDGMQPDEVRIIFASMADRGLGEVQGNGDRLGWRWSQ
>NC_010628.1|WP_012408346.1|2039694_2040234_-|hypothetical-protein
MTTCPIGLICSDFKCDRGYCQTLADPWPLPYHINPVWLPGVSLWVEIPGFDYNSPNVEYLIIQAEEHNRWAESVRQEMWRGGWWKAEDLPYQPHPEGGLMVIHHLRLDEEITFSSPWVYNPNKPYNCSPTHWEEFMPPVPLDGYRRAFTDDYIESDGFYRAFLLRWPSDFVEQYEYDDD
>NC_010628.1|WP_148220268.1|2038523_2039708_-|tyrosine-type-recombinase/integrase
MTTTNEDQWISADNRTQKLVIRFWVKGFPKQFFISTGLKDTKRNREIVRSKRDAIANDIALERFDSTLKSYQFITAAALDLKEPQIQSGQNLQELWERFTQFKASQIEETTILEKYRTIARYIQRLPSQSPEDAPAIRDWILDNLTHYMAWETLNCLSRCCEWSNDSGLITHNPFFKLKIPKPKNKSTDDYYKAFTLQQRDLIIQSFEEHSLYAYYAPLVKFLFWTGCRPGEAFALTWGDVSPDRCRIGISKSCNLHRIHKGTKNGKKRIFPCQSGSRVQKLLLDICPAHSQPHNLVFVSKTGRPMTSSIMFSFWNEWKSKSSTFKYLGLVKELANEGKIPYLKPYATRHTFATWAISSGVSPDKVALWIGDTVETVLTYYCHPEIVSAECPDF
>NC_010628.1|WP_012408344.1|2036229_2038452_-|FdhF/YdeP-family-oxidoreductase
MLPKPKKYWTPQHWASWKPFGIGEQYPNNYWEVFRAIWLSRDKLPYAWNILDKGVCDGCALGTTGMKDWTLDGIHLCNVRLRLLRMNTMPAFDPVLLEDVSQLQKQKSAQLRDLGRLPFPMMRQRGEKGFRRISWDEALGIISDRIRATTPDRLSFYITSRGTVNETYYATQKAVRAMGSNNIDNAARICHSPSTAGLKAALGAGATTCSYKDWIGTDLLIFIGSNVANNQPVTVKYLHYAKKAGTKIVVINTYREPGMERYWVPSIVESAVFGTKFAEDFFLINMGGDIAFLNGTIKHIIANNWVDQSFIDIHTVGFAELKTSLESQSWEELERLSGTCREQMYAFAKMVKEANKAVFVWSMGITQHECGEDNVRSIINLALTKGFVGREGCGLMPIRGHSGVQGGAEMGCYATVFPGGKPITPENAAQLSQHWGFDVPASKGLIAPEMINAAYQAELDVLFSVGGNFLEVLPEPDYVEAALKKIPLRVHTDIVLSSQMLVEPADIVVLLPATTRYEIPGGVTETNTERRVIFSPEIPGPRIGEARPEWEVFLELARRVQPDLADKLAFADTSAIRQEIAQVVPQYAGIQHLQQPGDQFQYGGSHLCFGWNFPTSDGKAHFGVLLPRQRELPEGYFLVATRRGKQFNSMVQERKDAITGAVREAVLINAADAALLDLKDGDKVILKNELGELFCEVYIAPIQSGNLQVHWPEGNVLLDKSKRSLEGAPDYNAIARLEKI
>NC_010628.1|WP_012408352.1|2044127_2044541_+|hypothetical-protein
MVYANGQTQETSRRLYAGNFLDQREGLGGLQASSRSYGTESLRSNQVNSSKENPLGRTNEYRDTPPGKILERLKLIEGSYLSHLKKLEQKLECQLDETRGEEESFKAAIQELEQEIYNLVSTSDRLEPPNQNNGHNE
>NC_010628.1|WP_012408353.1|2044626_2044995_-|hypothetical-protein
MSIEKFGLDPNSRLGLTTDDVVALTTADYGMEKMTKLGQLIQGIEQWSNKNSNNKGAESQWFFDQGRECEILRTTGGGWQKGRFRIRLEFIPDNPEVFLQESAQKEDKLESPLDDLRSQLDP
>NC_010628.1|WP_012408354.1|2045096_2045393_+|hypothetical-protein
MPMFGFDGSTKAIIHFLEQIRDNKEGDKLTHKEVRAYGRLMLNLLPNLQVDNDEQIQVLLAAMSSSGLPHYDRSFAAEQILKLLQEQQQRKLDCPDGF
>NC_010628.1|WP_012408355.1|2045553_2048289_+|DUF3854-domain-containing-protein
MILSTPQAVDTIASHHWEEWQLSGVSAKIIQRNVRTLYDSREVDKVLNRNTKSRQKHSEHLVPCWMVSGVNPLTGENTLEGVQAKPDVSPLGKDGKVNKYLGAVGYGASPLFLDTGVEYCWQQVLADKSIPIIITEGAKKAGAGLTIGLPTISIPGVSTCRKMGRLHSWIEAFAGFGRTFYLCFDADILHKRPVQQSLINIARDLAATGSKVMVIKLPSIELKGMDDFIAAKGEEAFKQLIEDAPTIEEWKKDLEEQRKNDTEYDDEERTSKVYRAYKIIRDGWGDNLRLNQLKNIIELNDQKIELNQLRLGIAREFDMDVQIGDGQAIVEAIASQNAYHPVVEYLDEVAARYSTVDPSILDNLATKYFGTDDPLHNIYLKKMLISAVARARRPGCKVDTALILVGEQGINKSSFWRELFGRDWFTDELSDGNEKDELMKLHKFWGLEIPEIEHMYKRKDISSIKKFMSSSVDAFRAPYGLEVKEHPRACVLVGTSNETELLNDPTGNRRFWIIPVTDDIPIDIEQLVRERDLIWASANALYEKGYQWWLSPAESKIHNEASKDFQSVDPWTDTVLAYARQQGETTTSEILRIALGIELGRQEMLYTKRVSAILRSNGWEQYRQKIGNSRPWAWRLKSSSENQKSLGNKADQGRSPGSLFQNFELETELENQKSLGNKADQGRSPGSLPQNLQSDPPSTQQRQITPEPLQQETFEHCDPPVIRLDPPTLPNFSENNFVVQAEGTTTDTETRNESSAITCPEKCSYYKTFEGIKPFTFKVESDFGAVEVSAEPYHRFQTSGESKIWLIFKTPDGQALTKSIKATPDKKVLPRLAKECGVIQQWEEKVRKDFSSKVENASYKFKVQILGDDDYEWIEGCILKTMPNRPSVSHFIFTTPKKTVVTSHLGEFEEM
>NC_010628.1|WP_012408356.1|2048665_2049007_+|hypothetical-protein
MTTEPTLVQIFGAGAVQDSASLTIQKAALTAVGLTASSNNSAESLLIALLLVAKENLTPENHDINLDQSVTITNGVIPSFVARGTSQIQYRQDTFTVAVEKPEGLIVIDPDDY
>NC_010628.1|WP_041565276.1|2049006_2049375_+|hypothetical-protein
MAFSILNLQQIFGENATQDIDTLIIKKSDLIGLTASPSNTAESLLVAILLRASYAFEGSIGDEHGNKLSDEHGNSIGYSYRTFYEFLNVFIWEPKYVVRDENQLFIKDTIVAESYSNLPAWE
>NC_010628.1|WP_012408357.1|2049337_2049952_+|hypothetical-protein
MPNPIQISQLGSEKLQPDDTDLIPIQQADGITRHISKENLFANYAPISQAPSGSQYIHLQHTVASGQGSGGKQSVQWTARPINTIKFDQTGLALLSNNTITLPAGIYVCDAVGQFYDCGLIKTRLQDVTNDATLGRGYFTYTNWGSMMYLIPLKAIFTLAQSTDIQLQYFQAGGNYDGTYNMGAPWSYPGVPEVFADIILAKIG
>NC_010628.1|WP_148220269.1|2049968_2050532_+|hypothetical-protein
MVDDTAALLTYTDGDNITKSVKFVGAMPIDVEVNNINKEHFFSSGNAPLNHFAPGSITAVSCIGNFRQIASNPSTELPCTYILDNALITDNRITAEYDSLYSDNSGDMDFTVSYISTENIIRAFRNGEIIYKDVRKAPITFKVDCIKDSCPDGYLKCESDNYPGYCCISCSELKSTIANITASVRNK
>NC_010628.1|WP_012408359.1|2050533_2050866_+|hypothetical-protein
MSGQSLASVLGANATQTSSTVTISKADLASVGLTASGANDGEAIFAAIVLLAKQYLTSSNQVAIPAIQTIINDVAQPSYVTRNGQLYKRDSMTIAFDKATTNPVLDPDDY
>NC_010628.1|WP_193372277.1|2051726_2053787_+|hypothetical-protein
MAELQPIAAQVEAQQVELAFLEPQVKVALNLGTVAEGEAAAALAAAELAEGTAATALQLGTVAEGEAAAALATAELALATAETSLAKPIIPGPPGLPGEPGAQGEPGAQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGTPGEVNVTPEEITTAITAGIAANFPPIAGEIFSHNCVTNQTETYPYGGLGLYGLQAQIQQVSNQLESVSKTICRTYRIMGGNDWFEGENLNLRFNPEQTIKSQIKSCYQESATPQADITPQTVQVQNLPQMLYSLQAVTWRREGLHKLPINAAPSLMPNITRNPATGDILNIRDWQPQEYQKISDSVSFNAYQLGQFKAFMGEFPLTITINTEEGEKQIYMDNVSDALAELAGISLLTHNDLEINTQLGVKTLIEVGATKNSSLITQDIAFANAKYLGYQLNKVPKSVKTLFTPGEQDIKAFLKESDQQIITYTHRNGHLEHKLNTLLISAGITKAALTGFAAPGDDVMGSIIAKSALGQFTENADDWRKFLELLNSPPGDMKIDGIPQLVIEDITARVQEHLSKLT

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Crispr_ID: NC_010628_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_9

2047473-2047607

Orphan

A:N

Consensus_repeat	Method
AGAAAACCAAAAAAGTTTGGGTAACAAGGCGGATCAAGGCAGATCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_9

>merge|NC_010628|9|2047473-2047607|CRISPRCasFinder
AGAAAACCAAAAAAGTTTGGGTAACAAGGCGGATCAAGGCAGATCACCCGGATCACTTTTCCAGAATTTTGAACTTGAGACTGAATTAGAAAACCAAAAAAGTTTGGGTAACAAGGCAGATCAAGGCAGATCACC

>NC_010628|9|9|2047473-2047607|CRISPRCasFinder
AGAAAACCAAAAAAGTTTGGGTAACAAGGCGGATCAAGGCAGATCACC	CGGATCACTTTTCCAGAATTTTGAACTTGAGACTGAATT
AGAAAACCAAAAAAGTTTGGGTAACAAGGCAGATCAAGGCAGATCACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_193372277.1\|2051726_2053787_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_010628.1\|WP_148220269.1\|2049968_2050532_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408353.1\|2044626_2044995_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370166
NC_010628.1\|WP_167315591.1\|2042421_2042595_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408363.1\|2055508_2055865_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565274.1\|2042587_2042818_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408356.1\|2048665_2049007_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565276.1\|2049006_2049375_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565273.1\|2041762_2041954_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408361.1\|2053783_2054665_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408359.1\|2050533_2050866_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408347.1\|2040519_2041770_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376671
NC_010628.1\|WP_012408350.1\|2042891_2043260_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408351.1\|2043343_2043691_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408362.1\|2054666_2055311_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408352.1\|2044127_2044541_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408357.1\|2049337_2049952_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408354.1\|2045096_2045393_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408364.1\|2055915_2056503_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408348.1\|2041950_2042313_-\|hypothetical-protein	unknown	unknown	unknown

>NC_010628.1|WP_012408354.1|2045096_2045393_+|hypothetical-protein
MPMFGFDGSTKAIIHFLEQIRDNKEGDKLTHKEVRAYGRLMLNLLPNLQVDNDEQIQVLLAAMSSSGLPHYDRSFAAEQILKLLQEQQQRKLDCPDGF
>NC_010628.1|WP_012408353.1|2044626_2044995_-|hypothetical-protein
MSIEKFGLDPNSRLGLTTDDVVALTTADYGMEKMTKLGQLIQGIEQWSNKNSNNKGAESQWFFDQGRECEILRTTGGGWQKGRFRIRLEFIPDNPEVFLQESAQKEDKLESPLDDLRSQLDP
>NC_010628.1|WP_012408352.1|2044127_2044541_+|hypothetical-protein
MVYANGQTQETSRRLYAGNFLDQREGLGGLQASSRSYGTESLRSNQVNSSKENPLGRTNEYRDTPPGKILERLKLIEGSYLSHLKKLEQKLECQLDETRGEEESFKAAIQELEQEIYNLVSTSDRLEPPNQNNGHNE
>NC_010628.1|WP_012408351.1|2043343_2043691_-|hypothetical-protein
MNLTDIKPVDIITHIEQNFNRAQATGLNSLIFLALREQTSIAYQHKEYCFEDIPEQIIAVCDSLDEYHLVFLGVEIASWLLGEKKTTKQEEVKNAQPIAIQAIDDQKQPTLLSDY
>NC_010628.1|WP_012408350.1|2042891_2043260_-|hypothetical-protein
MTDQQITDRAITNGRSTTNKSDRKGRPREWKEMADDPLSEGFDSHQAEYVVGRTQVGFGTLEPGQLFSRSKTGKSLYVKLNDGRAVCLDTRQPIEVSPTRRKTWQIWLVTLFNSTTATKADF
>NC_010628.1|WP_041565274.1|2042587_2042818_-|hypothetical-protein
MTQKPNPSNEIHRAGFPEGQLLGNGASAEECAEISAAYIEGKPLPVSENPVINRISERLTHTSGYGQYSDGVKNYD
>NC_010628.1|WP_167315591.1|2042421_2042595_-|hypothetical-protein
MTENNTTNPWLIAAIAISEELKKQPPEVQAESRRMSKKTYPQTWKAIREKEEEQEQE
>NC_010628.1|WP_012408348.1|2041950_2042313_-|hypothetical-protein
MADEQKIVVEVPSDRGYSPVASTAQVSRLEEFKKGWRNAIALPDNLADLAFDLTASLTIPALFSSSWVSLPLPSFIRWGVMVMLALSGVIACYLRQAIPEIETILLIRLGLIFVGVLLGL
>NC_010628.1|WP_041565273.1|2041762_2041954_-|hypothetical-protein
MSKKDIESAIISVLTDAWCPQDLAKNAASILSEYYPDNTLIGATEAEVRVVKQAQEYVRDSDD
>NC_010628.1|WP_012408347.1|2040519_2041770_-|hypothetical-protein
MTENLHPSQLHQHLQMYAYAKWSSWGSLLLTVGLLSLGASLPRQSKTWVLAASVGTLEVGRRHRQTAKLLRESLGDIDRASRLNFQALARTQTQTTAQLALTVGSFDQDWKPENLITDPVEYIQKKQKHVALVGGTGDGKSTFTQYLSSKIGGRVIVYDSDAKPDDWAWLDQADVIGRKGNFKAIDTAMGNDLKTLEELVELRGEGGDNAITGRERFMIAEEFPVLVDECDNSTPWIKRHAKRGRRYKQFICALAQNDTAENFGLQGDKDTLYSCFCLVRLGQFGRDYARTKLKDPQLEQWLKAGGKKRFMVDDCPCELDLSNWGTTTSAPVENSGGGNEEARSQSSVMNEYEQFILNWGQQHPGEVLKAAHLSRASRLFDGMQPDEVRIIFASMADRGLGEVQGNGDRLGWRWSQ
>NC_010628.1|WP_012408356.1|2048665_2049007_+|hypothetical-protein
MTTEPTLVQIFGAGAVQDSASLTIQKAALTAVGLTASSNNSAESLLIALLLVAKENLTPENHDINLDQSVTITNGVIPSFVARGTSQIQYRQDTFTVAVEKPEGLIVIDPDDY
>NC_010628.1|WP_041565276.1|2049006_2049375_+|hypothetical-protein
MAFSILNLQQIFGENATQDIDTLIIKKSDLIGLTASPSNTAESLLVAILLRASYAFEGSIGDEHGNKLSDEHGNSIGYSYRTFYEFLNVFIWEPKYVVRDENQLFIKDTIVAESYSNLPAWE
>NC_010628.1|WP_012408357.1|2049337_2049952_+|hypothetical-protein
MPNPIQISQLGSEKLQPDDTDLIPIQQADGITRHISKENLFANYAPISQAPSGSQYIHLQHTVASGQGSGGKQSVQWTARPINTIKFDQTGLALLSNNTITLPAGIYVCDAVGQFYDCGLIKTRLQDVTNDATLGRGYFTYTNWGSMMYLIPLKAIFTLAQSTDIQLQYFQAGGNYDGTYNMGAPWSYPGVPEVFADIILAKIG
>NC_010628.1|WP_148220269.1|2049968_2050532_+|hypothetical-protein
MVDDTAALLTYTDGDNITKSVKFVGAMPIDVEVNNINKEHFFSSGNAPLNHFAPGSITAVSCIGNFRQIASNPSTELPCTYILDNALITDNRITAEYDSLYSDNSGDMDFTVSYISTENIIRAFRNGEIIYKDVRKAPITFKVDCIKDSCPDGYLKCESDNYPGYCCISCSELKSTIANITASVRNK
>NC_010628.1|WP_012408359.1|2050533_2050866_+|hypothetical-protein
MSGQSLASVLGANATQTSSTVTISKADLASVGLTASGANDGEAIFAAIVLLAKQYLTSSNQVAIPAIQTIINDVAQPSYVTRNGQLYKRDSMTIAFDKATTNPVLDPDDY
>NC_010628.1|WP_193372277.1|2051726_2053787_+|hypothetical-protein
MAELQPIAAQVEAQQVELAFLEPQVKVALNLGTVAEGEAAAALAAAELAEGTAATALQLGTVAEGEAAAALATAELALATAETSLAKPIIPGPPGLPGEPGAQGEPGAQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGTPGEVNVTPEEITTAITAGIAANFPPIAGEIFSHNCVTNQTETYPYGGLGLYGLQAQIQQVSNQLESVSKTICRTYRIMGGNDWFEGENLNLRFNPEQTIKSQIKSCYQESATPQADITPQTVQVQNLPQMLYSLQAVTWRREGLHKLPINAAPSLMPNITRNPATGDILNIRDWQPQEYQKISDSVSFNAYQLGQFKAFMGEFPLTITINTEEGEKQIYMDNVSDALAELAGISLLTHNDLEINTQLGVKTLIEVGATKNSSLITQDIAFANAKYLGYQLNKVPKSVKTLFTPGEQDIKAFLKESDQQIITYTHRNGHLEHKLNTLLISAGITKAALTGFAAPGDDVMGSIIAKSALGQFTENADDWRKFLELLNSPPGDMKIDGIPQLVIEDITARVQEHLSKLT
>NC_010628.1|WP_012408361.1|2053783_2054665_+|hypothetical-protein
MKINPDGSIDLEPGKDYVQVGQTTQYHGANRWYKKRTFSSQYAESSGSDGKTLLGKLLGGLKRLGGFALSIANALGIQISWTSLWQFCQMTSYTIYNFDWNQSDEQLKSQIEAINGMIANLAGYILGDVSIRVVTVAVIDGVPIRYPIIPARLAVEIAREKIAVIKGDIKHTAGKNIENQFKFGIQLIGQLGAQNLFYQSILSLRSLKAFGLEPVEKSGERWSFATEVDKRIQSIKPKVLQEFVKGYLGGLENAFWDQGYILSMGLDDIWAMDDLRHEVNDGDQKAVRINPDP
>NC_010628.1|WP_012408362.1|2054666_2055311_+|hypothetical-protein
MTGLVKSQGDIVIFGRQRDIKLAILQAISAQRQIWNKDVGQIVGMPTEDLPRAKHMDRKLVVLFKSVEKPPWRINGINPKSVDYSIPDCKQGLTYEQIKEICRAFTWGKFRCTAFLDNARQMAVYAASKEEAEEVMQRLVTLSTAQIIRLSVTEEIKVNVNQIKIATRVYPCYATLVTEPTDILGVPVGGKQAYKRRRRRLDLYRQPTDLSPLG
>NC_010628.1|WP_012408363.1|2055508_2055865_+|hypothetical-protein
MTARTDLTFQELETALAANGLTNALTVISGKLYVDISVVNGVTVADLTVEGVAELLYKLRIAAGNAQSTVNAALSTGEQLASYPPFSYGPPISGKVSVTHVSTFLIPLNENTITSPNV
>NC_010628.1|WP_012408364.1|2055915_2056503_+|hypothetical-protein
MVRRRGNKVQAYVIFKGSLKYGFQINEGFHETYKSELGQTTFAGAVGVFFGCNSPKPNRASKLIATGNISSFCSSASEKNLQKAGWTITSKGSNIRGIKTAGLTRTVYVPMPGGYNYAWNITAAEISHAEELGILEAAGDTANLIWGSTPKPPRASKKDASGTVSTFIQPKQSIITGAVEKGWSIRGINYALLPE

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Crispr_ID: NC_010628_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_10

2051259-2051386

Orphan

A:N

Consensus_repeat	Method
GTTTTAGAAGCTGAAATTGTGGGAATTGGGGCGACTGCTGGAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_10

>merge|NC_010628|10|2051259-2051386|CRISPRCasFinder
GTTTTAGAAGCTGAAATTGTGGGAATTGGGGCGACTGCTGGAAGCGCCCTAGCCCTAGCTACTGCTGCACAAGGCGAAATAGTCGTTTTAGAAGCTGAAATTGTGGGAATTGGGGCGACTGCTGGAAG

>NC_010628|10|10|2051259-2051386|CRISPRCasFinder
GTTTTAGAAGCTGAAATTGTGGGAATTGGGGCGACTGCTGGAAG	CGCCCTAGCCCTAGCTACTGCTGCACAAGGCGAAATAGTC
GTTTTAGAAGCTGAAATTGTGGGAATTGGGGCGACTGCTGGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_193372277.1\|2051726_2053787_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NC_010628.1\|WP_012408365.1\|2056483_2056735_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_148220269.1\|2049968_2050532_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408353.1\|2044626_2044995_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370166
NC_010628.1\|WP_012408366.1\|2057056_2057386_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408363.1\|2055508_2055865_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565276.1\|2049006_2049375_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565278.1\|2057462_2057774_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408361.1\|2053783_2054665_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408359.1\|2050533_2050866_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408351.1\|2043343_2043691_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565277.1\|2056734_2057067_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408362.1\|2054666_2055311_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408357.1\|2049337_2049952_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408352.1\|2044127_2044541_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408355.1\|2045553_2048289_+\|DUF3854-domain-containing-protein	unknown	unknown	gnl\|CDD\|227832
NC_010628.1\|WP_012408354.1\|2045096_2045393_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408364.1\|2055915_2056503_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408356.1\|2048665_2049007_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_148220270.1\|2058097_2058562_-\|response-regulator	unknown	unknown	gnl\|CDD\|381118

>NC_010628.1|WP_012408359.1|2050533_2050866_+|hypothetical-protein
MSGQSLASVLGANATQTSSTVTISKADLASVGLTASGANDGEAIFAAIVLLAKQYLTSSNQVAIPAIQTIINDVAQPSYVTRNGQLYKRDSMTIAFDKATTNPVLDPDDY
>NC_010628.1|WP_148220269.1|2049968_2050532_+|hypothetical-protein
MVDDTAALLTYTDGDNITKSVKFVGAMPIDVEVNNINKEHFFSSGNAPLNHFAPGSITAVSCIGNFRQIASNPSTELPCTYILDNALITDNRITAEYDSLYSDNSGDMDFTVSYISTENIIRAFRNGEIIYKDVRKAPITFKVDCIKDSCPDGYLKCESDNYPGYCCISCSELKSTIANITASVRNK
>NC_010628.1|WP_012408357.1|2049337_2049952_+|hypothetical-protein
MPNPIQISQLGSEKLQPDDTDLIPIQQADGITRHISKENLFANYAPISQAPSGSQYIHLQHTVASGQGSGGKQSVQWTARPINTIKFDQTGLALLSNNTITLPAGIYVCDAVGQFYDCGLIKTRLQDVTNDATLGRGYFTYTNWGSMMYLIPLKAIFTLAQSTDIQLQYFQAGGNYDGTYNMGAPWSYPGVPEVFADIILAKIG
>NC_010628.1|WP_041565276.1|2049006_2049375_+|hypothetical-protein
MAFSILNLQQIFGENATQDIDTLIIKKSDLIGLTASPSNTAESLLVAILLRASYAFEGSIGDEHGNKLSDEHGNSIGYSYRTFYEFLNVFIWEPKYVVRDENQLFIKDTIVAESYSNLPAWE
>NC_010628.1|WP_012408356.1|2048665_2049007_+|hypothetical-protein
MTTEPTLVQIFGAGAVQDSASLTIQKAALTAVGLTASSNNSAESLLIALLLVAKENLTPENHDINLDQSVTITNGVIPSFVARGTSQIQYRQDTFTVAVEKPEGLIVIDPDDY
>NC_010628.1|WP_012408355.1|2045553_2048289_+|DUF3854-domain-containing-protein
MILSTPQAVDTIASHHWEEWQLSGVSAKIIQRNVRTLYDSREVDKVLNRNTKSRQKHSEHLVPCWMVSGVNPLTGENTLEGVQAKPDVSPLGKDGKVNKYLGAVGYGASPLFLDTGVEYCWQQVLADKSIPIIITEGAKKAGAGLTIGLPTISIPGVSTCRKMGRLHSWIEAFAGFGRTFYLCFDADILHKRPVQQSLINIARDLAATGSKVMVIKLPSIELKGMDDFIAAKGEEAFKQLIEDAPTIEEWKKDLEEQRKNDTEYDDEERTSKVYRAYKIIRDGWGDNLRLNQLKNIIELNDQKIELNQLRLGIAREFDMDVQIGDGQAIVEAIASQNAYHPVVEYLDEVAARYSTVDPSILDNLATKYFGTDDPLHNIYLKKMLISAVARARRPGCKVDTALILVGEQGINKSSFWRELFGRDWFTDELSDGNEKDELMKLHKFWGLEIPEIEHMYKRKDISSIKKFMSSSVDAFRAPYGLEVKEHPRACVLVGTSNETELLNDPTGNRRFWIIPVTDDIPIDIEQLVRERDLIWASANALYEKGYQWWLSPAESKIHNEASKDFQSVDPWTDTVLAYARQQGETTTSEILRIALGIELGRQEMLYTKRVSAILRSNGWEQYRQKIGNSRPWAWRLKSSSENQKSLGNKADQGRSPGSLFQNFELETELENQKSLGNKADQGRSPGSLPQNLQSDPPSTQQRQITPEPLQQETFEHCDPPVIRLDPPTLPNFSENNFVVQAEGTTTDTETRNESSAITCPEKCSYYKTFEGIKPFTFKVESDFGAVEVSAEPYHRFQTSGESKIWLIFKTPDGQALTKSIKATPDKKVLPRLAKECGVIQQWEEKVRKDFSSKVENASYKFKVQILGDDDYEWIEGCILKTMPNRPSVSHFIFTTPKKTVVTSHLGEFEEM
>NC_010628.1|WP_012408354.1|2045096_2045393_+|hypothetical-protein
MPMFGFDGSTKAIIHFLEQIRDNKEGDKLTHKEVRAYGRLMLNLLPNLQVDNDEQIQVLLAAMSSSGLPHYDRSFAAEQILKLLQEQQQRKLDCPDGF
>NC_010628.1|WP_012408353.1|2044626_2044995_-|hypothetical-protein
MSIEKFGLDPNSRLGLTTDDVVALTTADYGMEKMTKLGQLIQGIEQWSNKNSNNKGAESQWFFDQGRECEILRTTGGGWQKGRFRIRLEFIPDNPEVFLQESAQKEDKLESPLDDLRSQLDP
>NC_010628.1|WP_012408352.1|2044127_2044541_+|hypothetical-protein
MVYANGQTQETSRRLYAGNFLDQREGLGGLQASSRSYGTESLRSNQVNSSKENPLGRTNEYRDTPPGKILERLKLIEGSYLSHLKKLEQKLECQLDETRGEEESFKAAIQELEQEIYNLVSTSDRLEPPNQNNGHNE
>NC_010628.1|WP_012408351.1|2043343_2043691_-|hypothetical-protein
MNLTDIKPVDIITHIEQNFNRAQATGLNSLIFLALREQTSIAYQHKEYCFEDIPEQIIAVCDSLDEYHLVFLGVEIASWLLGEKKTTKQEEVKNAQPIAIQAIDDQKQPTLLSDY
>NC_010628.1|WP_193372277.1|2051726_2053787_+|hypothetical-protein
MAELQPIAAQVEAQQVELAFLEPQVKVALNLGTVAEGEAAAALAAAELAEGTAATALQLGTVAEGEAAAALATAELALATAETSLAKPIIPGPPGLPGEPGAQGEPGAQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGPQGEPGIPLPPLQGLPGEPGPQGEPGPQGEPGTPGEVNVTPEEITTAITAGIAANFPPIAGEIFSHNCVTNQTETYPYGGLGLYGLQAQIQQVSNQLESVSKTICRTYRIMGGNDWFEGENLNLRFNPEQTIKSQIKSCYQESATPQADITPQTVQVQNLPQMLYSLQAVTWRREGLHKLPINAAPSLMPNITRNPATGDILNIRDWQPQEYQKISDSVSFNAYQLGQFKAFMGEFPLTITINTEEGEKQIYMDNVSDALAELAGISLLTHNDLEINTQLGVKTLIEVGATKNSSLITQDIAFANAKYLGYQLNKVPKSVKTLFTPGEQDIKAFLKESDQQIITYTHRNGHLEHKLNTLLISAGITKAALTGFAAPGDDVMGSIIAKSALGQFTENADDWRKFLELLNSPPGDMKIDGIPQLVIEDITARVQEHLSKLT
>NC_010628.1|WP_012408361.1|2053783_2054665_+|hypothetical-protein
MKINPDGSIDLEPGKDYVQVGQTTQYHGANRWYKKRTFSSQYAESSGSDGKTLLGKLLGGLKRLGGFALSIANALGIQISWTSLWQFCQMTSYTIYNFDWNQSDEQLKSQIEAINGMIANLAGYILGDVSIRVVTVAVIDGVPIRYPIIPARLAVEIAREKIAVIKGDIKHTAGKNIENQFKFGIQLIGQLGAQNLFYQSILSLRSLKAFGLEPVEKSGERWSFATEVDKRIQSIKPKVLQEFVKGYLGGLENAFWDQGYILSMGLDDIWAMDDLRHEVNDGDQKAVRINPDP
>NC_010628.1|WP_012408362.1|2054666_2055311_+|hypothetical-protein
MTGLVKSQGDIVIFGRQRDIKLAILQAISAQRQIWNKDVGQIVGMPTEDLPRAKHMDRKLVVLFKSVEKPPWRINGINPKSVDYSIPDCKQGLTYEQIKEICRAFTWGKFRCTAFLDNARQMAVYAASKEEAEEVMQRLVTLSTAQIIRLSVTEEIKVNVNQIKIATRVYPCYATLVTEPTDILGVPVGGKQAYKRRRRRLDLYRQPTDLSPLG
>NC_010628.1|WP_012408363.1|2055508_2055865_+|hypothetical-protein
MTARTDLTFQELETALAANGLTNALTVISGKLYVDISVVNGVTVADLTVEGVAELLYKLRIAAGNAQSTVNAALSTGEQLASYPPFSYGPPISGKVSVTHVSTFLIPLNENTITSPNV
>NC_010628.1|WP_012408364.1|2055915_2056503_+|hypothetical-protein
MVRRRGNKVQAYVIFKGSLKYGFQINEGFHETYKSELGQTTFAGAVGVFFGCNSPKPNRASKLIATGNISSFCSSASEKNLQKAGWTITSKGSNIRGIKTAGLTRTVYVPMPGGYNYAWNITAAEISHAEELGILEAAGDTANLIWGSTPKPPRASKKDASGTVSTFIQPKQSIITGAVEKGWSIRGINYALLPE
>NC_010628.1|WP_012408365.1|2056483_2056735_+|hypothetical-protein
MLCSQNRIIILPGDPEFDWTLQTSIPPLWRQVAQQDPDGFAFCARAGSGVLEPMTDEELEEYLYGGEYDERLQQIGEADLVLT
>NC_010628.1|WP_041565277.1|2056734_2057067_+|hypothetical-protein
MPWQTISAIQVTNTWQFTAPINGNLFRLKHSLLGTAHGFMSGLVCQAAFTNEQIEIYQPQKIYPRNELVILEFISPACFFDRRIGIKKRQSREINNLVWIVEVSIWNNEI
>NC_010628.1|WP_012408366.1|2057056_2057386_+|hypothetical-protein
MKFDPNVASFILAFIGALSGWVAWWAGRLKFERQQATQEAVKQAEKALNEERDFNHLKRNQEQISEGIANGFDGIEEILEDLMKEVLEIKSYLIRYGVIPDATLRKKQE
>NC_010628.1|WP_041565278.1|2057462_2057774_-|hypothetical-protein
MTNPVSSSGLDNYKVQWTGTNGSKLFGSYVIVSKNPSTPSKVEKITATLPYTVNFSAPKNALISAAGATGNQGAVEIKILKNGSECDQISVVGSGAMANKTCQ
>NC_010628.1|WP_148220270.1|2058097_2058562_-|response-regulator
MVLKSSNDLHPNKDRKLLEEIPPKKLLSLKGLKVLAVDDNEDCLCIIAFVLEDYQAQIKRALSADEAIEAVVEWKPDILISDIAMPGKDGYSLIRSIRKKEILEGGFLPAVALTSYWCQDELDQAMDAGFQKLIRKPFEADELVAILIKLTQDT

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Crispr_ID: NC_010628_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_11

2595761-2595891

Orphan

A:N

Consensus_repeat	Method
GCAATTGCTCAAATCGACACCTCGCCAAAAATTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_11

>merge|NC_010628|11|2595761-2595891|CRISPRCasFinder
GCAATTGCTCAAATCGACACCTCGCCAAAAATTTTTTTCATTAGATACAATCGAGCTTTACCTGTTTTGTTTCCCTTTGTGAGTAAGTCGAATGGCAATTGCTCAAATCGACACCTCGCCAAAAATTTTTT

>NC_010628|11|11|2595761-2595891|CRISPRCasFinder
GCAATTGCTCAAATCGACACCTCGCCAAAAATTTTTT	TCATTAGATACAATCGAGCTTTACCTGTTTTGTTTCCCTTTGTGAGTAAGTCGAATG
GCAATTGCTCAAATCGACACCTCGCCAAAAATTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012408739.1\|2594485_2595277_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NC_010628.1\|WP_167315604.1\|2592699_2592852_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408744.1\|2602930_2605873_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NC_010628.1\|WP_167315603.1\|2590621_2590792_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408733.1\|2586153_2586372_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408749.1\|2611307_2611568_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|214834
NC_010628.1\|WP_012408736.1\|2592929_2593337_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|226134
NC_010628.1\|WP_041566071.1\|2595902_2597156_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|227277
NC_010628.1\|WP_012408738.1\|2593966_2594410_-\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|226769
NC_010628.1\|WP_012408746.1\|2607022_2608207_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|130253
NC_010628.1\|WP_086000622.1\|2612746_2613067_-\|DUF4915-domain-containing-protein	unknown	unknown	gnl\|CDD\|379811
NC_010628.1\|WP_012408748.1\|2609527_2611249_+\|fatty-acyl-AMP-ligase	unknown	unknown	gnl\|CDD\|341254
NC_010628.1\|WP_012408745.1\|2605859_2607020_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|130253
NC_010628.1\|WP_012408740.1\|2595362_2595719_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226318
NC_010628.1\|WP_012408734.1\|2586633_2588778_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_010628.1\|WP_012408751.1\|2614171_2617426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_010628.1\|WP_012408737.1\|2593414_2593825_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319899
NC_010628.1\|WP_012408743.1\|2601006_2602926_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143440
NC_010628.1\|WP_012408747.1\|2608203_2609526_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|274374
NC_010628.1\|WP_012408735.1\|2590887_2592564_+\|alpha-keto-acid-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|226470

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012408739.1\|2594485_2595277_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.31085e-29
NC_010628.1\|WP_012408745.1\|2605859_2607020_+\|FtsX-like-permease-family-protein	gnl\|CDD\|130253	TIGR01185, membrane_spanning_subunit, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. [Transport and binding proteins, Other].	9.10258e-114
NC_010628.1\|WP_012408749.1\|2611307_2611568_+\|acyl-carrier-protein	gnl\|CDD\|214834	smart00823, PKS_PP, Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups.	7.96912e-17
NC_010628.1\|WP_012408737.1\|2593414_2593825_-\|VOC-family-protein	gnl\|CDD\|319899	cd06588, PhnB_like, Escherichia coli PhnB and similar proteins. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to bleomycin resistance proteins, glyoxalase I, and type I extradiol dioxygenases.	4.30519e-41
NC_010628.1\|WP_012408736.1\|2592929_2593337_-\|VOC-family-protein	gnl\|CDD\|226134	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only].	1.84201e-63
NC_010628.1\|WP_041566071.1\|2595902_2597156_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|227277	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription].	3.31356e-148
NC_010628.1\|WP_012408738.1\|2593966_2594410_-\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|226769	COG4319, COG4319, Ketosteroid isomerase homolog [Function unknown].	4.56592e-18
NC_010628.1\|WP_012408746.1\|2607022_2608207_+\|FtsX-like-permease-family-protein	gnl\|CDD\|130253	TIGR01185, membrane_spanning_subunit, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. [Transport and binding proteins, Other].	4.74848e-96
NC_010628.1\|WP_086000622.1\|2612746_2613067_-\|DUF4915-domain-containing-protein	gnl\|CDD\|379811	pfam16261, DUF4915, Domain of unknown function (DUF4915). This family consists of uncharacterized proteins around 370 residues in length and is mainly found in various species, such as Shewanella, Rheinheimera, Saccharophagus, Leptolyngbya and so on. It contains serveral TPR repeat-containing proteins. The function of this family is unknown.	1.61871e-20
NC_010628.1\|WP_012408748.1\|2609527_2611249_+\|fatty-acyl-AMP-ligase	gnl\|CDD\|341254	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL). FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin.	0
NC_010628.1\|WP_012408740.1\|2595362_2595719_-\|hypothetical-protein	gnl\|CDD\|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	8.22676e-36
NC_010628.1\|WP_012408734.1\|2586633_2588778_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.23187e-44
NC_010628.1\|WP_012408751.1\|2614171_2617426_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	3.10407e-95
NC_010628.1\|WP_012408744.1\|2602930_2605873_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	9.76241e-84
NC_010628.1\|WP_012408743.1\|2601006_2602926_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143440	cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10), an NAD+ and CoA-dependent acetaldehyde dehydrogenase, functions as a single enzyme (such as the Ethanolamine utilization protein, EutE, in Salmonella typhimurium) or as part of a multifunctional enzyme to convert acetaldehyde into acetyl-CoA . The E. coli aldehyde-alcohol dehydrogenase includes the functional domains, alcohol dehydrogenase (ADH), ACDH, and pyruvate-formate-lyase deactivase; and the Entamoeba histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1) includes the functional domains ADH and ACDH and may be critical enzymes in the fermentative pathway.	0
NC_010628.1\|WP_012408747.1\|2608203_2609526_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|274374	TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.	1.3406e-131
NC_010628.1\|WP_012408735.1\|2590887_2592564_+\|alpha-keto-acid-decarboxylase-family-protein	gnl\|CDD\|226470	COG3961, COG3961, Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only].	0

>NC_010628.1|WP_012408740.1|2595362_2595719_-|hypothetical-protein
MKYVLLIYLEENALSETEREDCYVKSAQLAQQLNSNGQYLATAPLHPVTTATSVRVRDGKPLVTDGPFAETREQLGGFFLIDAQDIDAAIAIAAQIPAVEVGTVEIRPVIEVAGLPEH
>NC_010628.1|WP_012408739.1|2594485_2595277_-|IS5-family-transposase
MSKAYSSNLTQDQWELLEPLIPVGKTGGRPRVVEMWQVINAIFYVLTQGCTWRNLPGDLPNWQTVYTYFRNWRKDGTWVSIHDQLRDWERVNNERAVSPTEAIIDSQSVKTAAMVTQQVGYDAGKKVKGRKRFLTVDTLGLVLPVLVSAASVDERSGGKLLLQKVKQMGDKVSRLNLIWVDGGYDGNPFMQWVMDFYRWVVQVVLRPRERKGFVLLPKRWVVERTFGWLTGCRRLNKDYELLPETAENFIYLAMIRIMVRRLA
>NC_010628.1|WP_012408738.1|2593966_2594410_-|nuclear-transport-factor-2-family-protein
MTKSAIKTNQAQIRQLIADQQEAICAKDVARIVSNYATEVIIFDIKPPFQTHGKEALRQVWSECLPYFPDSFEIETRDLNITVNDDLAVAHWLSHFTSIEVDHPAMQTWMRITAVCQRHQDEWQILHEHISVPFDPHTSQAVFTLNP
>NC_010628.1|WP_012408737.1|2593414_2593825_-|VOC-family-protein
MKINSYLNFNGNCKAAFKFYEQYLGGKIIMMLTHGDAPTAEHVPVQWHDKIMHVCLDLGDQLLMGSDSPPEHFETPQGFYVQLGIDEPAEAERIFHALAENGKVKMPIEQTFWSVRFGMLVDQFGIPWMINCQKTA
>NC_010628.1|WP_012408736.1|2592929_2593337_-|VOC-family-protein
MSTQIFVNLPVKNLNQSIEFFTQLGFQFNSQFTDETATCMIVSESIFVMLLTHEKFKMFTPKEICDATKSTEVLVCLSFDSREQVDEMVRLAVTAGGTTYNEPQDHGFMYGHGFADLDGHIWEIIYMEPSAINLG
>NC_010628.1|WP_167315604.1|2592699_2592852_+|hypothetical-protein
MYLKPFPFSRTVLGTQPTNYLNAIAALHSTSNSSKDASVFEEEQWLRQHY
>NC_010628.1|WP_012408735.1|2590887_2592564_+|alpha-keto-acid-decarboxylase-family-protein
MATFTVGDYLLLRLEQIGIKHIFGVAGDYNMEFLDYIVNHNGIELIPTCNELNASYAADGYGRLNGIAALITTFGVGELSAINGVAGAYAEHVPVVAITGAPATKIQALGSLVHHTLGTGDFSMFARMYEQVTVAQAYLTNENATTEIDGVLGICLLKKLPVYISIPMDVALTEVSAPSDSFIPPVFQSDGATLAEIVDVCVNILEKASQPVILADIGVARYHLHEQLRKLLTATGYPYATMNMGKGLLEETHPQFIGIYNGAASEESVRKRIEQADCVLTIGALMTDFNTGKFSAKLDPSQTIEVHGQYVKVKHALYNNVAMADVLSALSQRLQRRDPQTLNFKSATENLDAGFITPIEGGSSAPITQQYFWHRFAHFLQEDDIIVAETGTCLFGASIVPLPKGATFVGQVLWGAIGYSVASLLGCALAKPTAGIAASQRRSILLVGDGSFQMTAQELSTILRYNLKPIIFLINNDGYTIERDIHGERMPYNDIQPWNYHQLPKVFGGNGWGIKVSTESQLDKALQTAQQNHDQLAFIEVVMDKMDSPEVLLKMLQQ
>NC_010628.1|WP_167315603.1|2590621_2590792_-|hypothetical-protein
MPLSFSRMLLSLANFDVLKVLMELFVRRFVRFMLDESSHPFSPSSSSGVPHKPLPW
>NC_010628.1|WP_012408734.1|2586633_2588778_+|PAS-domain-containing-sensor-histidine-kinase
MNFQQQGIQSGNNFSVNQVLKVDEISRNGQEIENQLAEPDLKQLQDKLLLLIERNPLPLIEWNTAFQVIEWNLAAEQLFGYSKSEVLGCQVSEIIVPEVERVQAIKIMELLIEEKVGGNNLSKNLTKHGRVIICDWCHTPITNVDGKLISIVSTVQDITKVKSFENALRENENTYQQILDAITDMVLVKGAKSRIIWANKAFRDYYGMSESQLQNMIDAPFNEADHTLQYIKDDTYVFESGQTLEIPQEPVTRYNGEVRLFHTIKSAIRNELGQVIMTVGVARDISEHKQAQKEQAKLLAILEAAPDFISTADLNGQVLYFNKAARRMLELGEEESLQGRNLSQNHPKWANEIIQNQGLPESVRVGDWVGETAVLKADGREIPISQLIIAHKSPDGEVEYFSTIARDISELKAAEETLVQKAEDLERTLKELQSTQAHLLQSEKMSSIGQLVAGVAHEMNNPLGFIAASVKQAKPTFADIVDHLKLYQKKFPAPGDEILIHAEEIDLEYSLSDLPEMIDSMTIACDRLKDISTSLRTFTRADRDYKIPFNIHQGIDSTILILKHRLKANEQRPKIEVITNYGNLPEVECFPGQLNQVFMNILANAIDALDESNIDRGFKEIKANPNQIMITTSLKNKQVEVKIADNGQGMSESIKQKIFDDLFTTKGVGKGTGLGLAITQSIVIEKHGGTLDVNSTLGVGTEFVITLPITSAPC
>NC_010628.1|WP_012408733.1|2586153_2586372_-|hypothetical-protein
MDTEAEISGSWWKRVKYYARLAIERVEDGVDAVKELLCNLTNDERLGVMLEFEDASPEKFAQLVTDAPQWTE
>NC_010628.1|WP_041566071.1|2595902_2597156_+|RNA-polymerase-sigma-factor
MTSNAQSDVTQAIASLYRAEWGRIVATLIRLIGDFDVAEEAAQEAFSVAVNQWQSTGIPDLPRAWIIKTARYKAIDRLRRRTRLKEKLEWYAMSGLIPTTEEPTYDTDEIPDDRLRLIFTCCHPALAIEAQVALTLRMLGGLETDEIARAFLVPTATMAQRLVRAKRKIRDAGIPYKVPDTSDLSARVDAVLTAIYLIFNEGYAATRGETMVKADLCTEAIRLGRLVRMLMAPQLPSEVTALVALMLLHDSRRDARLDEAGDLVLLEDQDRRRWNQQQIAEALPLVEEALRGGTGPFGVQAAIAALHCQAARAQETDWLQIVRLYDLLERLQPSPIVSLNRAVAISMVDSPQTALGLIDELAPQLDGYHLFHAARADLLRRIGASASAAQSYGLALVLVKNDSERRFLERRLREVQP
>NC_010628.1|WP_012408743.1|2601006_2602926_+|aldehyde-dehydrogenase-family-protein
MKPVLISLLEPLNKLSASEQMVLEKIMQPVSFSAGTYIFKEGSFADSCYILEEGIVRIETASESSSNFVVNYLEAGTIFGEISLLDKMPRSATAYAQTNIIAKKILIQELEILLETSPRILICLWEMFRKAAPLGVRSLNELTIKKNHFVINPEVEVMLDKALLAQKEIQTWSEERIDALLLVIASSIAQHAESLATATVKATRVGDILDKVTKNKIASLGIYRSLVGKSGCGFISNNKINNVCEIASPMGIIFGMIPMTNPVATAVFKALICIKSRNALILSFPLSTKNVGTLVCEIIQEALIRQDAPVELIQWLKHRSSREQTEILMKHKNVSLILATGGASMVKAAYSSGTPAIGVGPANTPTLICADANIQHAARTIIVSKSFDNGLICGSEHNLIVDARVRKNFIKVLEQEGAAILTHEEKSYFSTVAFEDKSNRLQAKIIGQSAAKIAVMANIKRDYHIKLIIVPNEFLSLDNPYAYEKMAPILSLFTVQNEIEGIDLCRSILQIEGKGHTAIIHTKNKAVVRRFGLEMPASRILVNSPGVHGIIGLTSALDPSFTLGCGTFGGNSTTDNVTYSNLLNLKRVAYYQAPKFLDPEIFKNTYPQWLLQLLNLLNFLKLNALVTFISQRVSIQLRR
>NC_010628.1|WP_012408744.1|2602930_2605873_+|FAD-dependent-oxidoreductase
MSNPIRVVCLGGGYVAMWLTKALRNAIIYKKVEMIVISRDNYHTYHGFIAEMLTGKIQPSQVASPARRIFEPAYFYNAEIENIDVIKQVITTSRSLDGRQYEVSYDHLVISLGSVDDLSRYPGIAEHAMKLKSFNDCYKIRNHIIQMLELAEIETDTEERSRLLTFVVAGGNYGGIEVATELADHFRLLIKKEYRQIAPDEIKVIVIHSGERILSELVRRFPELVRYAENFLHDEFSNLEIITNTRIVAATPEEAILSNGERISTRTIISCTGTAQSPLLDKLPLERDKYGKIVTDEFVRVKGTNNVWAGGDCAAVPLPTGGTCPPLAIYALTCGYQIGGNILRSIESRKLKAYKFTGLGDAVSLGNRHAIAHLKGVPLYGFNAWVAWRIALFIFVPSWERKLRLLVDWSMWPFLGRDIISMKVQEKQSLKKAYFQAGQVIVKQGDIGRCLYLIRNGEVEVLQEMSNGETIIQTIGSGEHFGETSVIENSPHIATVRAKTSVQLVVIDREEALLLSNSLSVFNDTNRLLSSDTFVKENIDEYHAIASDIPRGSIAPVNSVMSATLEAAPWQELPSKAPARIGSSRILTRSESSQPSKFGFLGLASVAALIALSSTTTYLLTSKKVTTPEPKDNAIASQKLEVIALGRLEPAGEIISVAGPVGERIGHLEVAEGDNVKNGQILAYLESYNERLQTRNLAAAKVREIQEQIKTDTLLRQVEAEKSQSEIEQVNTPQLLQIKSQQALIRKAEVELSEVVKTRDRFQYLSQEGAIAKQDFDNKQLIVRQAEENLNQAKATLEQLAQARSSNIRTAQTAFKASQVNLARVDSHSGLEPAKNNLALGQAQLERSIIRAPQDGKVLKVFAHTGEAISQKSILQLGDTQQMFAVAEVYETDVSKVKFGQEAVITSPAFTKPIKGTVDKVGNLVFKNNTIGDDPTAEKDARIVEVKIRLQQSEQVANFSNLQVDVRIQLNNTGKIGAKP
>NC_010628.1|WP_012408745.1|2605859_2607020_+|FtsX-like-permease-family-protein
MRNRKNAQTWDGPALAWLNLIHAKTRFFVALSAIGFAVTLIFMQLGFLGAVLKTATFIYDNLNFDIVLISPKSLEASYTLPFSRQRLYQAAAIPGVASVAPFYISFKQWRNPETKFTRSILTMGFNPKDKVFKDPEINKYRLELQSQDKLLINRYSRPEFGSRQVGLKTELGGRDIEVIGFFSMTNSLRADGTVVMNDQNFIRLYTGRSFNDISLGLINVNDRDNINKIIQNLKQVLPKDVEILSREQAGERDKNYWLTSTSIGIIFGTGAIMAFIVGTVIVYQVLYSDITEHLSEYATLKAIGYSNFRLSKVVLQEAVILAFLGFIPGFFISSSLYIITRLATGLPMEMSYGRASFVFILANIMCSISALLSLRQVLTTDPADVL
>NC_010628.1|WP_012408746.1|2607022_2608207_+|FtsX-like-permease-family-protein
MLLFKFSLAWINLVHNRQRFITALGAVVFAVVLMFIQLGFRNAMLQSSVEFINRLDADLILTSRHRYVSFYDYTFKKNRLYQVQGFDGVQAVSPLYLAIGIWKNQGGVRQRPIRIFGYNLKSQTFSIPDIPNYINALQFPDTVIADKKSRQDFGDITPGVEVELLDRKVKIIGNFQLGTDFVADGNLITSDQNFLRIFHGHPYGDFGNIRTSLDDVDFGLIKIKSHDFNVKNLVEILNKSLPPDVVVMTKKEFIEQDIKYFDKSTPIGFMFGLGTVIGFFVGIIVVYNIIYTDINNNLPQYGTLRAIGYSNSYLFAIIVLQSAILAIIGFFPGLFASILIYQVMAKSTGLLVEMSLGVASLVAILTIFMCILAGLIGAKKIQGLDPAEVYEQKT
>NC_010628.1|WP_012408747.1|2608203_2609526_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MRIEPIIKVSKINHYYGTGQLRKQILFDISTEIQAGEIVIVTGPSGSGKTTLLNLIGALSSVQEGSLTVLGQELNRANNKLLENVRKNIGFIFQAHNLLTSLTASQNVQMSLALHGGISKREAERKAQAILEMVGLGERVNYYPNQMSGGQKQRVAIARALVTNPSVILADEPTAALDKKSGRDVVEMLQYLAKQQGCAILLVTHDNRILDVADRIISLEDGFLTSSKNTSSNNSHRLASLKGELINHVEDLSLKDFLSLLQQVTGEFQSFLSLIDNEATGKCLEEIIEAITLKITHLLQAERSTIFIVDDTSGNLWSEIIQSNRKKILKVGITAHFGVAAHVAATRECLNIPIALQDYRYSPAIDEQTGYQTRNILCLPILNSQSKVLAISQVLNKIGNNCFDRKDEQLLGEFSQQISAIFDMWCHLQKLHKTSISGKY
>NC_010628.1|WP_012408748.1|2609527_2611249_+|fatty-acyl-AMP-ligase
MIICPDLASEKFATLIELLRFRAFSQPDEIAYTFLLEGEKDTVNLTYAQLDKQAQTIAAYLQFKEQVLLLYPPGLEYIAAFFGCLYAGAIAVPAYPPRPNRSLQRLQSIVADAEASIVLTNTAVLSNLERQLAELPDLRALNWLTTDSTDNNLANKWQQPEIDSDSLAFLQYTSGSTGTPKGVMVSHGNLLHNQKMIQAGFQNTEKTIIVGWLPLYHDMGLIGNVLQPLYLGVRCILMSPVAFLQRPIRWLEAISRYQGTTSGGPNFAFDLCMRKVTPQQLSALDLSSWNVAFNGAEPVRVETIEKFSSTFASCGFRKEAFYPCYGMAETTLFVSGGIKTDAPVYITVREDELAQNRIVLAQGTEGTRTLVGCGQTYINQEIAIANPETLIRCAADEVGEIWVAGSSITQGYWNRLELTEQVFRANLADSKKQFFRTGDLGFLHNGELFITGRLKDLIIIHGRNHYPQDIEMTVADSHEALILGAGAAFTIDSKGEERLAIVQEIDRHYRNLDNDAVTEVIRTAIAQQHELQVHAIALIKMGSICKTSSGKIQRHACRNAFINGTLELWGKNK
>NC_010628.1|WP_012408749.1|2611307_2611568_+|acyl-carrier-protein
MKNKNLEAIQAWFISYIADLLEIEPAQIDIHKSFDSYGLDSVSAITVVGDLEDWLGFSIPSEIVYKYPSIEALSQHLAQNNGSTDP
>NC_010628.1|WP_086000622.1|2612746_2613067_-|DUF4915-domain-containing-protein
MPSSSAPKLEINCSPHFIPWLQTQFISLAFTTYQTNRVFFIGCNEQGRVAAYERLFDKPMGVTEDATTSNLAITAPTTSMAAMAMIPSSADWATIFSWAVVTVMTC
>NC_010628.1|WP_012408751.1|2614171_2617426_-|hypothetical-protein
MVNSSKGDINIGYNVQGISEYDFFSDSNFEDIHCRPLKTDSPYLGLKTFELKDKDNFFGREKWIANLGDRLKKDNVLLLLGASDTGKSSLIRAGLIPYLGSHKKSLINISFHPDESPFKSIYQCLASTFGKKSPIADIAREIRANTLIKIVTFLKQDYQHVLIFIDQFEELFTKTQKPERDKFVASLFQLFQQQDSSVKIVLTMQSDFLDRFSEYPQLAKIHDRYSRIVTRMSDGELKLAIAEPAARNGVTFEQGLVEQIIHDFHQQNDYLPLLAYTLNLLWEKENIANRVLKTKTYKELKEQTFGYLSEQANQFINASVGWRDRQEQEIQKLNLALTELKLREQSARVLNLLPVQPLEGLVLAIQTMGENLEKYPNQLLAPVLGSLKEAMNTPTEANSLRGHEQEVNCVAFSPDGKFIASGSSDSTLCLWNIIGNPTAQFLCGHEQEVNCIAFSPDGKFIASGSIDGILCLWDLQGNLITQPWQGHEEGVISVAFSPNSDGCANPSGVSIVSVGFDGTVCLWDLQGNAITQPWRGHKEGVISVAFSPNGDCIISVGFDGTVCLWDLEGNTITQPWHKHEAKIICATFSPDRKFIVSGGSDSTVRLWDIQGNPIGQPWHGHEGHVNSVAFSPDGKFIISGSCDRTIRLWNINGNSITQTWRGHEGEVNSLAFSPDGKLIISGGDRTVRLWELHQILQDRVIGRSQRKYENWVNSVAFSPDGQWIVSASNDSTIRLWDSNGNPTGQPWQGHEKEVNSVAFSPDGQWIVSASNDSTIRLWDSNGNPIGQPWQGHEKEVNSVAFSPDGQWIVSASNDSTIRLWDSNGNPIGQPWQGHEKEVNSVAFSPDGQWIVSASNDSTVRLWDSNGNPTGQPWQGHEKEVNSVAFSPDGQWIISASNDSTIRLWDSNGNPIGQPWQGHEKEVNSVAFSPDGQWIISASNDSTIRLWDSNGNPIGQPWRGHEYWVNSAAFSPDGQWIASGSLDGTVRLWHCGWQEWLQVCCNRLHYHPVFQNPENGSDLEIAHQTCQKYVWNPQFPKQLHNQGAAKLKEKAFSAALEDFKLTVQLNFISHWKDRLAWQSVPTENQ

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Crispr_ID: NC_010628_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_12

2679763-2679850

Orphan

A:N

Consensus_repeat	Method
ACTTGTACTGAGCGGAGTCGAAGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_12

>merge|NC_010628|12|2679763-2679850|CRISPRCasFinder
ACTTGTACTGAGCGGAGTCGAAGTAAGCGCTTAGTCGCTTACGTAGTGCCGCATTTACACGCGACTTGTACTGAGCGGAGTCGAAGTA

>NC_010628|12|12|2679763-2679850|CRISPRCasFinder
ACTTGTACTGAGCGGAGTCGAAGTA	AGCGCTTAGTCGCTTACGTAGTGCCGCATTTACACGCG
ACTTGTACTGAGCGGAGTCGAAGTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_083782367.1\|2665674_2665863_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408788.1\|2704339_2705446_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176193
NC_010628.1\|WP_041565327.1\|2710379_2711357_+\|MvdD-family-ATP-grasp-ribosomal-peptide-maturase	unknown	unknown	gnl\|CDD\|275037
NC_010628.1\|WP_012408786.1\|2695846_2703454_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NC_010628.1\|WP_012408778.1\|2650669_2652160_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236145
NC_010628.1\|WP_083782369.1\|2708889_2709024_+\|microviridin/marinostatin-family-tricyclic-proteinase-inhibitor	unknown	unknown	gnl\|CDD\|372187
NC_010628.1\|WP_012408787.1\|2703493_2704291_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408790.1\|2706409_2708401_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|226646
NC_010628.1\|WP_012408789.1\|2705485_2706307_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NC_010628.1\|WP_148220293.1\|2680367_2684147_+\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|225858
NC_010628.1\|WP_012408785.1\|2684198_2695850_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|237108
NC_010628.1\|WP_012408791.1\|2709312_2710305_+\|MvdC-family-ATP-grasp-ribosomal-peptide-maturase	unknown	unknown	gnl\|CDD\|275038
NC_010628.1\|WP_012408781.1\|2661347_2662763_-\|AAA-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|373105
NC_010628.1\|WP_012408777.1\|2649563_2650601_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|239583
NC_010628.1\|WP_012408782.1\|2663342_2664503_-\|AAA-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|373105
NC_010628.1\|WP_012408775.1\|2646737_2647928_-\|ABC-exporter-membrane-fusion-protein	unknown	unknown	gnl\|CDD\|213754
NC_010628.1\|WP_012408776.1\|2648281_2649337_-\|acyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|239583
NC_010628.1\|WP_012408779.1\|2652290_2653193_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NC_010628.1\|WP_052304581.1\|2660768_2661056_+\|transposase	unknown	unknown	gnl\|CDD\|315923
NC_010628.1\|WP_012408780.1\|2653240_2659933_-\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|238429

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_041565327.1\|2710379_2711357_+\|MvdD-family-ATP-grasp-ribosomal-peptide-maturase	gnl\|CDD\|275037	TIGR04184, hypothetical_protein_HMPREF0204_12500, ATP-grasp ribosomal peptide maturase, MvdD family. The pair of ATP-grasp proteins MvdD and MvdC (microviridin D and C), as well as an acetyltransferase, produce microviridin K, an example of a RiPP (ribosomally synthesized and posttranslationally modified peptide). Microviridins are peptidase inhibitors.	0
NC_010628.1\|WP_012408786.1\|2695846_2703454_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NC_010628.1\|WP_012408778.1\|2650669_2652160_-\|SDR-family-oxidoreductase	gnl\|CDD\|236145	PRK08063, PRK08063, enoyl-[acyl-carrier-protein] reductase FabL.	2.20042e-71
NC_010628.1\|WP_083782369.1\|2708889_2709024_+\|microviridin/marinostatin-family-tricyclic-proteinase-inhibitor	gnl\|CDD\|372187	pfam12559, Inhibitor_I10, Serine endopeptidase inhibitors. This family includes both microviridins and marinostatins. It seems likely that in both cases it is the C-terminus which becomes the active inhibitor after post-translational modifications of the full length, pre-peptide. it is the ester linkages within the key, 12-residue. region that circularize the molecule giving it its inhibitory conformation.	0.00347398
NC_010628.1\|WP_012408788.1\|2704339_2705446_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176193	cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	5.83541e-151
NC_010628.1\|WP_012408790.1\|2706409_2708401_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	4.79756e-144
NC_010628.1\|WP_012408789.1\|2705485_2706307_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.55411e-88
NC_010628.1\|WP_148220293.1\|2680367_2684147_+\|type-I-polyketide-synthase	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_010628.1\|WP_012408785.1\|2684198_2695850_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|237108	PRK12467, PRK12467, peptide synthase; Provisional.	0
NC_010628.1\|WP_012408791.1\|2709312_2710305_+\|MvdC-family-ATP-grasp-ribosomal-peptide-maturase	gnl\|CDD\|275038	TIGR04185, RimK-like_ATP-grasp_domain_protein, ATP-grasp ribosomal peptide maturase, MvdC family. The pair of ATP-grasp proteins MvdD and MvdC (microviridin D and C), as well as an acetyltransferase, produce microviridin K, an example of a RiPP (ribosomally synthesized and posttranslationally modified peptide). Microviridins are peptidase inhibitors. This family includes MvdC and corresponding members of similar cassettes.	0
NC_010628.1\|WP_012408781.1\|2661347_2662763_-\|AAA-like-domain-containing-protein	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	0
NC_010628.1\|WP_012408777.1\|2649563_2650601_-\|fatty-acid-desaturase	gnl\|CDD\|239583	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.	4.01548e-25
NC_010628.1\|WP_012408782.1\|2663342_2664503_-\|AAA-like-domain-containing-protein	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	8.35483e-15
NC_010628.1\|WP_012408775.1\|2646737_2647928_-\|ABC-exporter-membrane-fusion-protein	gnl\|CDD\|213754	TIGR02971, devB-like_secretion_protein, ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.	6.58319e-96
NC_010628.1\|WP_012408776.1\|2648281_2649337_-\|acyl-CoA-desaturase	gnl\|CDD\|239583	cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; and acyl-CoA desaturases are present in ER membrane. ER-bound plant acyl-lipid desaturases and acyl-CoA desaturases require cytochrome b5 as an electron donor. Most of the eukaryotic desaturase domains have an adjacent N-terminal cytochrome b5-like domain. This domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within the homolog, stearoyl CoA desaturase.	2.30799e-35
NC_010628.1\|WP_012408779.1\|2652290_2653193_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	1.30005e-10
NC_010628.1\|WP_052304581.1\|2660768_2661056_+\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	5.79087e-17
NC_010628.1\|WP_012408780.1\|2653240_2659933_-\|type-I-polyketide-synthase	gnl\|CDD\|238429	cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.	4.40039e-116

>NC_010628.1|WP_083782367.1|2665674_2665863_+|hypothetical-protein
MNMVDGSTLLTTIFVLVDDWYQQKGYRYIPLLSRPSPRFTDSEMLTLLVAIDFSHTQENSSF
>NC_010628.1|WP_012408782.1|2663342_2664503_-|AAA-like-domain-containing-protein
MRYQVGGSLKYDDSTYIVRQADEQLYTGLKTGDFCYVFNCHQTGKSSLLHRTIHLLEKENYICVYLNLALLGTNQITPIQWYKGIIFSLFHKLNLTKQVNFKSWWEQQSELDPVQRLYQFVEQVLLREVQNNRIFIFIDNINSLLSLNFPANDFLIWISYCYEQQAYKPSFQRLGFALFGVASPSNLIVGRHRTPFNIGQAIKLCDFQLHEVMTLVEGLEKVVSQPQAILAYIIHWTRGQPFLTQKLCQLVVQVALESYKGTITIPKGTEGYWVEQLVRSRIIQHWEFQDEPEHLRTIRDRLLFDEHKAGKLLNIYQRVLQVEELRNRNPIENLIPADNSEEQTQLFLSGLVGNYNGYLRVKNPIYRSVFTPQWVSRQLENLPFSW
>NC_010628.1|WP_012408781.1|2661347_2662763_-|AAA-like-domain-containing-protein
MYKTKRKRGVVLTSTGIKRLQSAILSVEIVENKGEHLSLEEISSRVNVSTRTLSKLWSLSESVDQKTIKLCFSAFNIELHSQDYTIVNKANETETSELLSITNIEEDLSQRSELTSFVEEHHTQTEQIENLWSYPDGPVPLDSHFYIERPPLERKVYREVTTSGCVIRIKSPKQMGKSSLVLRLCAFAQKLGYQTVNLNCYQFDSECLTDLNKLLRRLCWKIATQLGIDPNLKEKWNEEIGYNLSSGFYLENYLLEQCQSPVVLVLNEIDRFFEYPHICQEFFALLRSWCEEARHNPNWQKLRLVMVYSTEDYISMDINLSPFNIGLPIRLNDFTQPQVEDLARRYSLDSFKAKDFAQLMSLVGGHPALIQISLYYLRSHEMTLQEIVEDAIANGGIYRDHLWRQLIKLQENPRLAKAYAEILAATQSISLNPIDTYKLEGLGLIRFEGDRILPRYGLYQAYFAKQLSTIA
>NC_010628.1|WP_052304581.1|2660768_2661056_+|transposase
MDNFSSHKVTGIKEAIEAVGIRLVYLSPYSPDFSPIENCWSKVKEFLRRRNPPQASLAARTYLELDEAITNALNAVTKKDIIGWFTHCCYCIAPN
>NC_010628.1|WP_012408780.1|2653240_2659933_-|type-I-polyketide-synthase
MSYIAVPYQIHFEDTMAYGSHHYLTNFRFQCIAREHFFFGGLFNKETFQDVVILTQQGYSRNMAPVGLGERVVILLTFDEPTRSTTRLCFRVIREDGTPVCCGYQVLVFTSRITGELIPIPPVLVDYVLQNFGLIERLLDPPFAEKVVAGGKEIKKIFTPEVCELGKLITSRNLANDPSGVQIVDTYFLTLDKVNITKVNPLAQNKIVFTFPGQGAYDYQTLQTLYQNYPAKKSLFTKADELTQRYLGYSFLTLIQAQSNDEHQFLLQQCPDLDQIGILLTNIIIAELLIEQGLHPDILVGHSFGELTALTIGGVFDFETSVEIVCQRIQVLRNFASNIGGMMAIACGAQRLTELFSAIKKTALTVAVINHPQQIVLSGLYTELQQVESELVPLGISCTFLKSRYPFHSALLAPAVASFCSSLQQFSFQAPKIPVYSPINKAFYTANTDFPQTLAAHFIQVVNFSQAVKILQQQGVHSFIECGASRVLTKLVQKNLPSEPEAIAQSVMSDDRNIIEGLQHIVQTYSGQLSHPQPTPENNEKLHPVVDEAFEYGKWEIEPEEVTAFSSAALSSDSDTNGTNVPIAIVSMGCLLPGADSPQAYWRNIQDGVTGIVDLGLIDPSLVPDFMSDGSVIPEKTYTLLSGRINQVEYEKGIPYSLEEFNNLTRGQQLLAKALAQCLNPIHQQVSATKKVHCLLGSTADGIKEYDEALFAESLKYFVEKLDEPEQLRTTFSNSLQTLLGRKSGEHEFLAPDLCYKRVVQKFLGDGVKTLLLDAACASSLYTVDIGIKLLQNHESDLVLSGGVFAPGVAMNCLFAQFKGLSATGSRPFDATADGVVFSEGAAILALKRLPDAIAAGDRIHGIIRGVGTSSDGKSAAVNVPTKVGQVLACQRACENAQINPNTIQYIEAHATATPVGDGTEFKSLSEVFDKREANLPPIYLGSVKALIGHTGWVAGTASIIKVCQALKAQTIPRQYNYKSPNKDIELQGSCLSIPTTPLPWPNNIAGQPRRAAVNGFGFGGTNANLIIEAYDPSYHRQFSQRPNTHSLRRPLALVGIGTLFPSLNGLQENSVPDIQVKQFARETLQLPVKRRLLPDVTDRMDASQYLSVMATEKALRGLGEKALALQSRTGVVIGMPGKTGRGITVNERLFLDRLRRLLQSKPGHFSQSDIDFERLCQKLFTAIQQANSPSSPYTLIGSMPNITAGQVCNLFNFNGPNIVIDAGIDSLLETLRIAELMLMSHDCDLILAGSINGYVGHGAHTSGKDMPTGEAACILALTTIEIAQSHGFPILSTLDVNTSGIQESIVEVAGSNIPIDFYGATGVVEIARAVERVSQSREVVAVEWKSASQGQITFSPFPAPQETANEKYIGTQDINSQSLHQTPTHFYTPSLFPATVEKIAVPRPLEKRQILFLTDQPELWTALAQTQMLKDLNYIVACPANKAIADAIQIDLTSEDAIKATVQKLDFSRYDTIVAIKNLNAISDEQLISIDDSDSLLNLLFAVVRHSYPQLQTGDSALATLCLNAWKTGQLSPYTGLLAGFIKSVARELPKCICKSINTGAASIKDAWQQLDTELNSQPGKPVEVSYMNGDRQIFQLVSLAEVTKDHTPVLNQNSVVITTGGGRGVTAVLMEEVLQRFGCTVVLLGRTDLKSVPAEVLELDEADFAQYESRFYQEQLHRERSQKMPALKAQIEYYQAARELHHTLKHLSALPGRFEYVNVNITDVEAVNQVVAKVVKTYGRIDLVVHGAGIQTSKLLPKRTFTEFQRIIATKLSGLKNLYNACHQYAPNNKVHFHLLTSAFSYIGNDGQPDYGAANEFMNRFAAYMDSSLLTGSWSTIAWLGWAGIGMTRGSEYAVLSQERGLHAIQAEEGQQLFSLLLNGQATAPINVLLTEGEKNYYQIDVVTAQNNLSPGLAKLENKLANKTEENILITPREHIANTKKFSDERQWYVSIKTAPYLLDHLVNDVPTMPATFEQELAAQAAQALRPNLQLIAIENSKFSRFIKFFNEQEILLKTQATIVTEKNHETVIHVKLLSDFIHKNGTLLQKDCVHCEMDIRLAANTQAIVGRYETWNGFEGETIQEPYMNPNSPVRLKGMFDCINNIVIGSNRRRAKFRLKNTTQLRLTSDFCTPAILIDAMLRVATSSGDSNDPRAVFVPQGWKKITLTPDLNDWKLNQLHQELFLVGSNSQKTGDTLYCDWLQVMDANDRVLVLMEEAIGLQKSTQLARL
>NC_010628.1|WP_012408779.1|2652290_2653193_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MPPSTTHLPEFAQCLPTIAAMHIDIGGELAVHAKDYLSAKELAYFHQFKHPRRRYEWFTARLVCKLLFSRYLSNTHLANSNSVWPPTIQKLGCNDIATVLPIVYRSIEILPSNPSLKGAPQLFWQGNILSAMYLSISHAGGLAIASLSSSGPVGLDLEEPISHCPNFYESYFSKQETLWVQQQIKDELSISQLYTLLWTLKESYLKTGISPINNICDFANLEIKIDTSLFTVSKHLPKIGFNSQLHILKLQFSYAKSTFAPYAAFSIMANLILSIVAFELNTHLENVLKVLREDNSLLHK
>NC_010628.1|WP_012408778.1|2650669_2652160_-|SDR-family-oxidoreductase
MFLQNIPSSATTSELTSVLTNVQRVFAEVTRYPLEILETQASLEEDLGIDSVKLGEVFSVLREHYKLPPLTQLNIPQQQLRTISDVAVAISQFVVPEKIEPSSIPNHQLEPIPSPVTSDFTSVLANVQRVFAEVTRYPLEILEAQASLEEDLGIDSVKLGEVFSVLREHYKLPPLTQLNIPQQQLRTISDVAVAISQFIVSNDFPVKVELSLPEVNGNRKTAQLPLSDGNEQVKSLTSSLYQESNKPLAHKIALITGSGRGLGKVIAQHLAELGATVIVNSFHSTASGEETAAEIIANGGKAIHIWGSVANETQLHQLFDKIEAEFGRLDFFISNASNGMLAPLEEIKVEHLDKAFHTNVIGLHQGALRAAKLMKKQGGGKIITLSTNAAHRYIPYFGCMATVKAAVEALTRYLAMEFEPYNIQVNCISSGPVYGELINKWPDSEKLIPYWESISLGNKLCMPEDVADMVSYLLREEVKRINGSILLIDAGQSIHM
>NC_010628.1|WP_012408777.1|2649563_2650601_-|fatty-acid-desaturase
MELHLIRNKVRESLSSDVFQLQPMRGIVAILLIPVVIVFSWLIIHYSPPWYLCLLISIIIGQIYFIWDLIGHEALHGSIFQSSFGQYFLGYLGYTSFLISPLTWKFWHCQCHHGYTNFAERDPDFVGTIETFSKSPITRLRAMLNPGIQHWMSYIGFFCGLTLQGQYVLWVYEKDSDLARKFGFNRLRAKIETILMILFWSFLGVMIGFQASLYIIIMPMAIANFSHVTYIVTQHFLRPTNSDVNNPLQNTISVTTHPIIDFIHLNGGYHVEHHLFPSMSPKFAPLVSQVLRQHFADEYVLIPYLKVLLSAIKTPRIYFDSETLINPSSGEKTQISDIIVWMTQK
>NC_010628.1|WP_012408776.1|2648281_2649337_-|acyl-CoA-desaturase
MELHAIRNKLRESLPSDVFQPQPMRGIAAILLISIVIACSWIIIQYSLPWYVYLLLSIVIGQIYTIWGFIAHEALHGAIFQSNFGQYFLGYLGYIPFLISPLTWKFWHCQCHHGYTNFVERDPDFVGTIEEFSKSPVTRLRAMFTPGTHNWFSYIGFFCLFTLEGQYVLWFYKTDSDLADKFGFNRLRAKIETILMILFWILLGSAIGDRASLYIIVLPMLLGNFIYVSYILTQHLLRPTNSDVNHPLHNTITVTINPVLAFLHLNFGYHVEHHLFPSMSHQFAPLVSQALRQNFGNEYVSLPYLTVLSLIIKTPRIHFDSETLIVPSSGQKVKLSEILSEVGRETSQPTA
>NC_010628.1|WP_012408775.1|2646737_2647928_-|ABC-exporter-membrane-fusion-protein
MKAFEKSSKFTWTYIAIAVVALVASITSLSSISKILHSKPNLESSSVPLATDPPVKAVTALGRLEPKGEVIQLTASSQGSRIDRLLVKQGDWVQNKQVIAILDSRPRLQAALEQAMQRVAVTQAQLDRVKAGAKIGEIQAQKAVIARLEVQLREDTAAKKATVTRLDAEAENAQLEYQRYESLYQDGAVSASLRDSKRLIFETVVQQLKEAKINFYQTTAILTQQVKEAQATLDRIAEVRPIDIRVAQTEVNNTKAIVKQAQAELDLAYVRASRPGQILKIHTWEGEIVDSNKGIVSLGQTNQMYAIAEVYESDLPKVHKDQQATITNVSGGSLTETLRGVVDEVGLEVAKKDVLNTDPAANIDSRVVEVKIRLTPTDSQKVAGFTNMKVKVAIFL
>NC_010628.1|WP_148220293.1|2680367_2684147_+|type-I-polyketide-synthase
MMINSVNINGFNNEIAIISLAGRFPEAKYLDSFWQNLRDGVESISRLTDEELINSGVSLDLLNNPNYVKANAVLSDIELFDANFFAYSAKEAELIDPQQRLFLELAWEAIEKAGYDPHTYNGLIGVYAGVGMNRYLVNNLYPHHQLLETVDPLQLTISNDKDFLPTRVAYKLNLTGTAVNVQTACSTSLVAVHLACQSLLNCECDMALAGGVTLSIPQKIGYLHQEGMILSPDGHCRAFDAKAQGTIASSGAGIVVLKRLKDAIADRDHIHAIIKGSAINNDGAMKVGFTAPSVSGQAAVIGEAQAIAGVDAETISYIEAHGTATPLGDPIEIAALTQAFNQSTDKKGFCAIGSLKTNLGHLDTAAGVAGLIKTVLALQHQMLPPSLHFETPNPKIDFANSPFYVNTTLTEWKTNNTPRRAGVSSFGIGGTNAHVILEEAPVFEQGSREGSAVLGVPPRSNCRRAGEQGRNYQLLVLSAKTASALEQATANLITHLKEHPELNLSDVAYTLNSGRRGFNYRRMLICQDLEDAVKTLSSLEAQQVFSNYTEITERSVVFMFPGQGSQYVNMAREIYETETVFKEQIDYCSEVLKPLLGLDLRHILYPSEEKIHEASKQLQQTAVAQPAIFVIEYALAKLWQSYGVEPQAAIGHSIGEYVAATLAEVFSLEDVLSLVAARGQMMQQLPTGAMLSIPLPADKIKSQLGQELSVAAINQPSQCVVSGSTAAVDTLQNQLAAQGIECRQLHTSHAFHSQMMEPILKAFAERVKKVTLNPPKLPYISNLTGTWITVTQATNPDYYAQHLRSTVLFAQGVEKLLATPEQVLLEVGPGHTLTTLVKRHPDKAAAQTVLTSVRHPQEKQSDNHVLFTTLGQLWLAGVNIDWFGFYSHQEHYRLPLPTYPFERQRYWIDPPQKTAWGQLQALPTPSQLWTSLVQGGQNQANTKNAELNELTYQENRQWLNRLCTAYINSAFRQLGAFSNVEEKYSLENLLVQCHISPRYQQLFSRWLQILVEQGQLQEQEGLFTGLRPCSQDYINEHLEEVRARFATSSLVDLDLVQRCGENLAAIVVEQEPLEIFNELVYQKGNNGSHSESPLNTYYNSILHSSLEQVVKLLPLPQASASAAFSIKSRLEQNNQKSEISLQKKPDIFQPEKLSALHSRPDLPNSYVAPRNEIEQKIADIWEELLGIKQVGIHDNFFKLGGDSLIAVQVLSRIRNIFSIRLSVANLFESPTIAEIAPKLEKQIDPDTNFSAGEREEITI
>NC_010628.1|WP_012408785.1|2684198_2695850_+|non-ribosomal-peptide-synthetase
MNIEQLVVDLSKQGVKLWVEGEQLRVNAPKGVLTLETRDLLAKNKAELIFLLHEKNTDTDTDFPPIKAERPQNLPLSFAQERLWLLNQLEPDNSSYNEQAALKLHGELNVVALEQSLNKIIDRHEALRTNFRTINEQPVQVITDSLNLNVPIVDLSKLPESEREIACQQLATTEADRPFDLASSPLIRASVVKLTEVEYALVLTIHHIVVDGWSIGVLMRELATIYSAICNNLSPELPELPIQYADFAIWQRQWLQSEVLQTQLDYWNQLLKNAPTLLELPTDRPRPAIQTFRGEIQYGEFSVELSEAIANFTRQEGATLFMTLFAAYVTLLYRYTDSDDIVVGTPIANRDRLELEGLIGFFVNTLVLRTDLSGNPSFQQLLSRVRQLTLQAYAHPDLPFEELVKALQPQRDLSYTPLFQVMFVLQNAPISEVELAGLTISSLPAQSATAKFDLTLSMQNTATGLVSVWEYNADLFDASTIERMRGHFQTLLEGIIANPQEQISQLPLLTEIEQQQLLLKWNDTGVDYPQDKCIHQLFEEQVELTPDAVAVVYENQYLTYHELNCRANQLAHYLKSLGVKADVLVGICVERSLEMVVGLLGILKAGGAYLPLASDYPTERLRLMLEDAQVSVLLTQQKLLDRLPEHTAQLHFGSLPYGTLRERLRSGQAAQYKVCLDADWQLISQLSQDNLISETQATNLAYVIYTSGSTGQPKGVLITHQGLLNLVFWHQRTFKITTLDKATQLAGTAFDAAVWELWPYLTAGASIYLVKPEILLSPVDLQDWLESKKITISFLPTPMAEQLLSLEWPESTTLRTIVTGGDKLHRYPSGLLPFQVVNNYGPTENTVVTTSGLVVSNGRDNNISPPIGRPIANVEIYILDSYLQPVPIGVPGELHIGGAGLARGYLNRPELTQEKFIPNPFSDESHSRLYKTGDKARYLNDGNIEYVGRIDDQVKIRGFRIELSEIEAVLSQHSDVQLSCVIAREDSPGDTCTERLVPSISTSLDGTGAEVSRSKRLVAYVVAHQDCKPVISELRQFLKTKLPEYMVPSAFVILESLPLTPNGKVDRRALPKPDLDTTLLEKYVAPRTPIEEMLALLWAQVLNLELVGIYDNFFELGGHSLLATQLVSRIRNIFKVELPLRELFARSTVVELAQSIGQLQQQVLRLTSAPVPSSEVEMLGTSRSVQDLELSTPFITQRAENAQLPLSYAQQRLWFLDQFEPNSALYNIPLALRLVGTLNQVALEQSLHEIINRHEALRTNFVTVNGQPTQIIQKQTNWTVTVVDLKHLSTLVLSEAVGVRVASPLGEASASAEVTEQEIATQQLARQQSIEPFDLANQALVRATLVVLNETEHILLVCMHHIVSDGWSMGVFLQELAALYNAYSQDQPSLRDAMRSLLPRKGTPLAPLPIQYADFALWQRQWLQGGVLQSQLSYWQQQLANAPALLSLPTDRPRPAVQTFAGAHQEFVLSQKLTQGLIQLSQKQGVTLFMMLLAAYDTLLYRYTGTEDILVGSPIANRDRSEIEGLIGFFVNTLVMRTNLAGNPSFSELLGRVREMAMEAYTYQNLPFEMLVEALQPQRDLSHTPLFQVMFALQNVPLSGVELAGLSVTPLMPESTTAKFDLNLFMQNTATGLVGVWEYNTDLFDASTIERMTGHFVTLLEGIIANPEQQISQLPLLTQIEQHQLLVEWNDTQVDYPQDLCIYQLFEEQVQRTPDAVAVIFENQQLTYYQLNCRANQLANYLQSLGVSADVLVGICVERSIEMVVGLLGILKAGGAYVPLDPDYPQQRLSFILDDAALPVLLTQQSLLESLPEHTAQVVCLDSDRQLIEQHSRENPLTGGKPENLAYVIYTSGSTGQPKGVQVNHSSVVNFLASMSHCPGLTDSDTFCAVTTISFDIAALELYLPLVVGAKVVVVRREVASDGARLLLELQHSSTTVMQATPATWQMLVASGLSTQQLGMKLLCGGEALPPQLAHQLLETGAQVWNLYGPTETTIWSSICQLRNESTQLEAKSAIAPIGRPIANTQFYILDSHLQPVPVGVAGELHIGGLGLAKGYLNRPQLTQEKFISNPFKRSRGAGEQASRGETFNSNRLYKTGDLARYLPDGTIEYLGRIDNQVKIRGFRIELGEIEAVLSQHEDVQASCVIAREDTPGDKRLVAYVVPHLGQTPTVSQLRSFLSNQLTTYMVPHTFVMLESLPLTPNGKVDRRALKAPDSRGELEVSFVAPRNQTEEILAQIWTEVLKVEQVGVHDNFFELGGDSILSLQIINRAKLAELQLTLKQLFAHQTIAELAIVANVASVIQIEQGLVTGTLPLTPIQHWFFEQNLQQPHHFNQSFLLSVPSDLKPELLKQVLQQLLVHHDALRLRFTQSDSTWQQTHSAVTDSVAFSYIDLSALPQNKQKTAIEASATCLQASLNLSENLVQVAFFYLGIDKRARLLIIIHHLVVDGVSWRILLEDLQTAYQQLAHGKVIALPAKTTSFKDWSNKLTKYAQSETIKSEMAYWLNESRAAVSPMPVDYTQGANTVEAASTVTVSLNEAQTRALLQDVPKAYNTQINDVLLTALALVLSRWTNSSSVLFNLEGHGREDIIDGVDLSRTIGWFTTIFPVLLELGATENPADALKSVKEQLRAIPNKGIGYGLLRYLIQDAEIAAQLEALPQAEISFNYLGQCDQLLNTSSWMQLVSESTGHSHSLQNNRAHLLDINSVIAGERLQIDWTYSPNIHQHATIESLAQEFVKTLLGLIAHCSSPESGGYTPSDFSLVKLNQPEIDQLLARLVSKNQSGKTNSRNIEDIYPLSPTQQGMLFESLYAPDSGVYFQQLSCTLTGKLNVTAFEQAWQQVVAQHSILRTAFVWEQLAQPLQVVYRQVDVNLNSHDWQQLSAQDQQQQLELLLHSQRKQGFQLSQPPLIHLSLIQLSADTYQFIWSSHHLLLDGWSMPLVFKDLLYFYQAISQGENLAVQPTQSYRNYIAWLQKQDLAQAEQFWREKLQGFTAPTPFSVDKKQSSNRKKLDSSYSEQQTQLTVQATAAIQSFARKHQLTINNLVQAAWALLLCRYSQETDVVFGATVSGRPPSLVGIESMVGLFINTLPVRVQVSDDTQVLALLKDLQAQQVESEQYSYSSLVEIQGKSEINRGTPLFESIVVFENYPVDEAVQSHNYSFSIDKIHAIEQTNYPLTVIAAVGKQLLVKISYDISRFDDATITRLLGHFQILLEGIVANPHQRILQLPMLSQTEQQQLLVEWNDTQADYPLDKCLHQLFEDQVDSTPDAIAVVFENQQLTYQQLNSRANQLAHYLNSLGVGADVLVGICVERSIEMVVGLLGILKAGGAYVPIDPNYPQERIRFMLQDCGAKVLLTHSQLKLGAGGWESGTGNKETFPQSRSILCLDRDNFANQSTENPSRQSQPDDLAYVDDLAYVIYTSGSTGQPKGVQLLHRGLSNYLHWAKDYYAVAQGQGTPVQSSLSFDATITSLYLPLICGRTTILVREKQELQLLADIVKQNNHLSLVKITPSHLEILNQQIEPDTMPNRVNAFVLGGEALHANQIIPWLTHAPNTRLINEYGPTEAVVGCCVYEATGKRDLAGDLLIGQPIANVRIYILDNQNQLLPVGIPGELCIAGAGLARGYLNRPELTSEKFIELDLFGKKERIYKTGDLARWLPDGNLEYLGRIDNQIKIRGFRIELGEIEALLNQHDDVQASVVTAREDTPGDTCTERSRSKRLVAYVLPHQHTPTINELRQFLKAKLPDYMVPNAFVMLESMPLTPNGKVDRRALPAPDLHSDAYGGLRLRTEKYVAPRTPIEEILVQIWSQVLKVEQVGIHDNFFELGGHSLLATQVLSRIRDRFKVKLPLHELFNTPTIAELAPSIGKLQQQNSDLTVPRILPRSKR
>NC_010628.1|WP_012408786.1|2695846_2703454_+|non-ribosomal-peptide-synthetase
MMIEELPLSYAQQRLWFLDQLEPNSAIYNILLALRLEGNLNRAALEQSFQEIIDRHEALRTNFITVDGKPSQIIQTQINWTISVVECEHLPPSEQEIATQQFVQQQAIQPFDLAEGALIRATLIVLSKTEHILLLCMHHIVSDAWSLGVFVQELAALYNAYSQGEPSPLIPLPIQYADFGIWQREWLQGELLQNQISYWQQQLKDAPALLSLPTDRPRPAVQTFAGAIQEFALSVELSNQLTQLSQKQGVTLFMTLLAAFDTLLYRYTGQLDILVGSAIANREHSEIEGLIGFFVNTLVLRTDLSGNPSFSELLSRVRQVALGAYSHQELPFEMLVEALQPERNLSHPPLFQVMFVLQNTPMSGVELAGLTISSLPPQNTIAKFDLTLSMHNSVTGLVGIWEYNTDLFDASTIERMAKHFVTLLSGIVANPEERISQLPLLSHTEQQQLLVEWNNTQADYPVDKCIHQLFEEQSVSTPDAVAVVFENQQLTYHQLNSCANQLAHYLKSLGIKSDTLVGICVERSIEMVVGLLGILKAGGAYVPLDPEYPTERLAFMLEDAEVSILLTQQRLIDRLPEHQAKFICLDEAWEQIAQNNQDNPTSEVKAFHLANLIYTSGSTGKPKGVMVEHKGLCNLAQAQIQTFGLTSDSRVLQFASFSFDASISEILMALGSGARLYLGTKDSLLPGKPLIEQLSDRSITHITLPPSALAVMPGSELPALQTIIVAGEASSSELIRQWSAGRNFFNAYGPTEASVCATIAKCTEDDNKISIGKAIANVQVYILDEYLQPVPIGVPGELHIGGLGLARGYLNRPELTKEKFIPNPFARSREAGEQGSRGAEILLNSQFPVPSPQSPIPNPRLYKTGDLARYLPNGNIEYLGRIDNQVKIRGFRIELGEIEELLNQHSDVQTACVIAREDHPGDTCTERLVPSISTSLDRTGAEVSRSKRLVAYVVGHKQHSPTINQLRSFLSSQLPQYMIPHAFVMLESLPLTPNGKVDRRALRAPDSREGLEISFVAPRTPIEEILTQIWTQALKVDQVGIYDNFFELGGHSLLATQLVSRIRNIFKVELPLREFFARTTVAELARSIEQLQQQDLELVSPPILPRAENAELPLSYAQQRLWFLDQFEPNSAIYNIPMALRLVGTLNQVALEQSLYEIINRHEALRTNFVIVDGKPSQLIQTQTNWTVTVVDLKHLSTLVLSEAVGVRVASPLGEASASAEVTEQEIATQQLAQQQANQPFDLANQALVRATLIVLSETEHVLSVCMHHIVSDAWSMGVFIQELAALYNAYSQGEPSPLTPLSIQYADFAIWQRNWLQGEVLQTQISYWQQQLKAAPALLSLPTDRPRGSVQTFAGGHQEFALSVELSNKLTKLSQEQGVTLFMTLLAAFDTLLYRYTGTEDILVGSPIANRNRNEIEGLIGFFVNTLVLRTDLSGNPSFSELLGRVRLMAIDAYAHQDLPFEMLVEVLQPERDLSHTPLFQVMFALQNVPMSEIELADLTISSLPVESATAKFDLFLSIQNTGTSAEAEASPNGDATRTPTTTLSTSNGLVGVWEYNTDLFDASTIERMTGHFMTLLSGIVANPEERISQLPLLSQTEQQQLLVEWNNTLTDYPRDKSIHQLFEEQVERTPNAVAVEFVDERSEASRRVNQQLTYHQLNCRANQLAHYLKSLGVSADVLVGICVERSLEMVVGLLGILKAGGAYVPLDPNYPQERLAVMLEDAQVSVLLTQHSLLNRLPQHQAHLVFLDTDWQLISQSSQDNLISDVQATNLAYVIYTSGSTGKPKGVALNQLALCNLILWQLQNNTISTGAKTLQFAPISFDVSFQEMFSTWFSGGTLFLITEELRRDTSALLGFLQEKAVERLFVPFVALQQLAEVAVGSELVNSHLREIITAGEQLQITPAISQWLSKLTDCTLHNHYGPSESHVIITFTLNNSVETWPLLPPIGRPIANTQIYILDQYLQPVPVGVAGELHIGGVSLAQGYLNRPELTLEKFISNPFSTDGHSRLYKTGDLARYLPDGNIEYLGRIDNQVKVRGFRIELGEVEAVLSQHGDVEGCCIIAHEDTPGDKRLVAYVVAHQNSTPTISELRQFLKAKLPDYMVPSAFVMLESMPLTPSGKVDRRALPAPDLHSSNSDKYVAPRNQVELELTQIWSRILKVDKVGVKDNFFDLGGHSLLTPYLMAQIKQQFGKNIAIASLYQNPTIEQLATIVPFDSDSKSGSPLVILQPHGSKPPLFCLPGAAGYPFYLYDLARCLGSDQPFYSFQAIAPGEGGELITQVEDVAARYIQELFVVQPQGPYFLAGHSFGGKLAFEMAQQLLRKGYKVALVAILDTTAPFHQKNPSAFDLDNTKWLAELADTIEVVYGKKMDCSVDTLQSMVWEDQLKYVLERLKNADILPPDDEITQLNNMVQLLKANAVVNYVPQEIYPTKITLLRAKENVVKVNESNSEVLSDILQDSHWGWSKFSAEPVNVHFVPGNHVTMMNLPHVQTLAEQLKACIEQAQEVRGDGYKPDFDNQIRPIKFLSNPHPVDIK
>NC_010628.1|WP_012408787.1|2703493_2704291_+|hypothetical-protein
MAATSNQIKSKVWDNKQEYHLTIESLRMLLENRIPLIRLKEFATPQECEILVAQAELFNFDCYQNVNPKIERIGITVFEYNRISKAAYFQAVERTTKLRDCIMAASFNPLERLMVKIQECTGATVRIASEPLYGSYYAGLIRKIEQGTQLHIDYAPLEQSKWEIGTVIYQLSWNLYLKFSPNNHGQTRIYDRQWQPGDEQYKLDSYGYGDTVIADADTIAFQPYVGDVFIFNTRNYHTVEPMDGQRVTFTSAIGLLPNGEIILWS
>NC_010628.1|WP_012408788.1|2704339_2705446_+|zinc-binding-dehydrogenase
MPLAAVMTAPNQPVEVQQLPEPILEKGGIIIETLYSEVCGTDVHLLHGRLEGVPYPIIPGHFSVGRVVETGGAVSDVNGKLIQPGAIATFLDVHETCYNCWYCLVAKASTRCPKRKVYGVTYSAKDGLLGGWSELIYLKPGVKVLTLPEEVSPKQFIAGGCALPTALHAIDRAQIQIGDVVVVQGCGPVGLSAAILALLSGAGKVIVIDKFESRLVVAKSFGVDETLAIRADDPRQHIERVLELTNGHGADVTIEATGIPIAVKEGLNMTRNGGRYVIVGHYTNTGEILINPHLEINLKHIDIRGTWGIDFSHFYRMIELLKRHSDSSKNIAWSSIISRSYTLKEINQALVDVEQGSVLKAVIQPNLS
>NC_010628.1|WP_012408789.1|2705485_2706307_+|pyrroline-5-carboxylate-reductase
MLEDLQIAFIGGGTMGEMIISRLLLTKIVPKADLIIVSDPVSARCLHLEREYGVRTTTSNIEAVLGASIVILAVKPQVLAEVLGMLKDKIPPNALVISIVSGANISSLCQGLNHPAVVRTMPNIAVQVGHGTTVWSASSSVTEIQRSHTQVILQALGKEFTTQNEHYLDMATALSSAGTGFVFLYIEAMIDAGVQMGLTRTQAQELTLHTIAGSVELMFQTHEHPAVLRNKVTSPGGVTAAGLYELEKGGMRTVISNAVLAALSRNQQLGNIS
>NC_010628.1|WP_012408790.1|2706409_2708401_+|ABC-transporter-ATP-binding-protein/permease
MPTQVVQAQPSKNVFSDFIQFWENAKAIAGPYWYPTKPGQRAFSDVIRAWGMLILLILLIIAFVGVTAFNSFINRYIVDIILQEKDYSKFINIISFYAAGLVLVTLLLGFSKFVRKQIALDWYKWLNNQILDKYLSNRAYYKINFKADIDNPDQRLSQEIEPITSNVLYFSATFLEKVLEMITFTAIIWSISQQIAVALVIYTIMGNLIAVYLNQELNSINQAEIESKADYNYCLTHVRTHAESIAFFRGEKQELNIIERRFTKLITNIKRKIDWERNRDIFNRAYQVAIELFMLFILAPLYIKGEIDFGQVGQASVASFMFATALGELITAFGSSGNFSSYVERLAEFSSALEEVTKQPENVSTIKIIEENHLAFENVTLQTPNYEQVIIEDLSLSVQPGEGLLIVGPSGRGKSSLLRAIAGLWNAGTGRLVRPPLEEVLFLPQRPYIILGTLREQLLYPNTSRQMTDAELKEVLQQVNLQNLLSRVDGFDTEVPWENILSIGEQQRLAFARLLVTHPSFTILDEATSALDLQNEGSLYQKLQSTKTTFISVGHRESLFDYHQWVLELSQDSSWQLVTVQDYRNQKAINIQSTSNNEPRSQSQILTETITSEKLTHKEISELTNYSISTIRSKASKGDSITTRDGLTYRYDKNSSVLKWLRV
>NC_010628.1|WP_083782369.1|2708889_2709024_+|microviridin/marinostatin-family-tricyclic-proteinase-inhibitor
MPTNTVKTVDVVAVPFFARFLEEQATEGTEVPWTYKFPSDLEDR
>NC_010628.1|WP_012408791.1|2709312_2710305_+|MvdC-family-ATP-grasp-ribosomal-peptide-maturase
MHLSRDVVLLITYSGDFFTIDRVAEALSKKGVQPFRLDTDKFPLEVQLTAHFDKSKSYHTIECNNRSISTEQVQAVWMRRIWEPQLSQELAPKFREACIKESQATLDGFWDSLKETTWVDNLERIDYASNKLRQLRIASEVGFVIPQTLITNKAQAAREFFQQVNGKMVSKLLTALSRSMEANSSFFLYTSIVKEEDLQDAESLRYCPMVFQEQIPKQQELRVVYVNGNVFVGALNADMYAAAKVDWRKPGVEIGAWQHHQLPDQVVRRLKAFMGKFGLLFGALDFIVTPSGEYVFLEINPVGEWGMLEKDLDLPIASAIAEALLQRMNN
>NC_010628.1|WP_041565327.1|2710379_2711357_+|MvdD-family-ATP-grasp-ribosomal-peptide-maturase
MTVLIVTFSKDNESIPLVIKEIEARGEKAFRFDTDRYPTEVKLDIYSGDTERVIITDGEQKLNLSEVSSVWYRRMRYGQKIPDSMDKQYRDASINECRATVRGMIASLQGFHFDRMSNVDRANNKQLQLQVAREVGLLTPRTLTSNNPEAVKQFAQECNQGIVTKMLSSFAIYDDRGRENVVFTTPVTNDDLENMEGLHFCPMTFQENVPKALELRTTIVGHRVFTAAVDSQSLSGSTYDWRKEGRALVKNWQLYDLPEDIEKKLLKLMAYFGLNYGAIDIIVTPDGRHVFLEVNPVGEFFWMEIYSPHYPISQAIAEVLLTNKN

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Crispr_ID: NC_010628_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_13

3103015-3103126

Orphan

A:N

Consensus_repeat	Method
TTTAAGGGGGGTTAGGGGGGATCTCCAATGACTATGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_13

>merge|NC_010628|13|3103015-3103126|CRISPRCasFinder
TTTAAGGGGGGTTAGGGGGGATCTCCAATGACTATGCACAAAAAGCGTGACTTTGACTCCGGTTCCCCCCTTTTTTAAGGGGGGTTAGGGGGGATCTCGAATGACTATGCAC

>NC_010628|13|13|3103015-3103126|CRISPRCasFinder
TTTAAGGGGGGTTAGGGGGGATCTCCAATGACTATGCAC	AAAAAGCGTGACTTTGACTCCGGTTCCCCCCTTT
TTTAAGGGGGGTTAGGGGGGATCTCGAATGACTATGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012409036.1\|3098983_3102166_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_010628.1\|WP_012409039.1\|3103999_3107302_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NC_010628.1\|WP_012409043.1\|3111434_3111623_+\|DUF4089-domain-containing-protein	unknown	unknown	gnl\|CDD\|372560
NC_010628.1\|WP_012409028.1\|3089458_3090313_+\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NC_010628.1\|WP_012409044.1\|3111725_3112352_+\|DUF4328-domain-containing-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409045.1\|3112362_3113769_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-A	unknown	unknown	gnl\|CDD\|236409
NC_010628.1\|WP_012409041.1\|3109505_3111008_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NC_010628.1\|WP_012409035.1\|3097419_3098877_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_010628.1\|WP_148220431.1\|3115284_3115791_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NC_010628.1\|WP_012409027.1\|3088834_3089161_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409038.1\|3103171_3103558_+\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NC_010628.1\|WP_012409042.1\|3111061_3111337_-\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NC_010628.1\|WP_012409030.1\|3092260_3093286_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NC_010628.1\|WP_052304696.1\|3094421_3094772_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409040.1\|3107620_3109213_-\|ATPase	unknown	unknown	gnl\|CDD\|223715
NC_010628.1\|WP_041565354.1\|3113837_3114236_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409034.1\|3095970_3096852_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409033.1\|3094718_3095834_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NC_010628.1\|WP_012409029.1\|3090538_3092191_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173884
NC_010628.1\|WP_012409031.1\|3093407_3093749_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012409036.1\|3098983_3102166_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_010628.1\|WP_012409040.1\|3107620_3109213_-\|ATPase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.55856e-48
NC_010628.1\|WP_012409039.1\|3103999_3107302_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	1.63982e-22
NC_010628.1\|WP_012409028.1\|3089458_3090313_+\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	2.62233e-37
NC_010628.1\|WP_012409035.1\|3097419_3098877_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	3.80329e-44
NC_010628.1\|WP_012409045.1\|3112362_3113769_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-A	gnl\|CDD\|236409	PRK09201, PRK09201, AtzE family amidohydrolase.	0
NC_010628.1\|WP_012409038.1\|3103171_3103558_+\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	1.24496e-48
NC_010628.1\|WP_012409030.1\|3092260_3093286_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.30281e-114
NC_010628.1\|WP_012409041.1\|3109505_3111008_-\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NC_010628.1\|WP_012409042.1\|3111061_3111337_-\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	2.83169e-23
NC_010628.1\|WP_148220431.1\|3115284_3115791_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	3.33101e-57
NC_010628.1\|WP_012409033.1\|3094718_3095834_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.84132e-86
NC_010628.1\|WP_012409029.1\|3090538_3092191_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173884	cd08519, PBP2_NikA_DppA_OppA_like_20, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NC_010628.1\|WP_012409043.1\|3111434_3111623_+\|DUF4089-domain-containing-protein	gnl\|CDD\|372560	pfam13318, DUF4089, Protein of unknown function (DUF4089). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length.	5.30811e-20

>NC_010628.1|WP_012409036.1|3098983_3102166_+|efflux-RND-transporter-permease-subunit
MSFNISAWSIKKPVPTIVLFLILTVVGWFSFLSLGIDTNPNIDVPTVSIKVTQPGAGPAELESQVTKKIEDAVAGLGNIDFMISTVSDGNSKTTINFVLGTDSDRATNDVRNAIAQIRQDLPQEINDPIVERLDFADGPVITYAVKSDKRSVEELSNIVDQTISRALLGVRGVAQIQRVGGVDREIRINLSPSRLQSLGITATQVNDQIRDLNINLPGGRAEVGGSEQSIRTLGSAASVDILKTYEILLPQGGSVPLSSLGTIEDKFGDVRQAATLNNQPVVAFQVLRSTGSVLVTVEQGVKAAVKELEKTLPADVKLDLIFTRADVVRQSYQSTIDELIQASVLAVIVILVFLRDWRATLITAVALPLSIIPTFAVQQALGYTLNNMTLLALALAVGNLVDDAVVEIENMERHIAMGKSAWDAAFESADEVGLAVIASSATIIAVFMPVAFMGGIPGQFFQPFGVTVAVSTIFSTLVARMVTPMMGAYLLKEAGEQGSRGAGEQREQREQREQRGRGAGGVIRLFNFKFAIPGRKQGNRTLRTDNRRGFQPYRSLLQWALRHRLTTMAIALAFFIASLMLVPLIPKGFVDDGDFGISNVSIELPPGSTLEDVNKVVTQATDIIRQNPVVERVLATEEINSASLAINLKPREERKISQKQFEEQVRPDFEQIPGARISFQSQSPGDSRKGLSIVLRSENPEALNQAADALEKQMRSLPGLVEVSSTASLVKPEILVIPNPQRAADLGVTVQAIARTASLATIGDNEANLAKFNLSDRQIPIRVQIDPKVRADINTITNLQVLSQNGKLIPLVAVADIRFGSGPATINRYDRARQVAVEANLQGISLGEAVETINKLPVMQNLPPGVVQQPSGSAKIMQEIFGRFGGALGLALMCIYAILVLLYNNFLHPLSIMAALPFCLGGALVALMVAQKPLGIYALIGIVLLLGIVTKNSILLVDYTIINIQEGKTQRQALVEAGVSRLRPILMTSLATIAGILPLALGIGAGSEVRQPMGIAIMGGFTTSTLLTLVVVPVIFSYIDNFQTWIMNTLRCGFGKKPSR
>NC_010628.1|WP_012409035.1|3097419_3098877_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSDESVSEIEVKEAITSEDANFLSKSEQKSTRAWLKPLFLGAGLGIAIAFGGMSVLSHLPSRQQSAVADKKINPSMTVTIATVEAARVVRTLKTTGTVAARDLIPVLPQTNGLQIKSIPEDVKEGVFVKKGQVLAVLDGSILQSQISQAKADVESKQADVESKQADLASKQADLASNKAIVQQKQADLAQAKAKLEEAAKNYQRYQQLADSGTISRQELDTRSYAVKTAIQVVNLSQENLRSAQANIGSAQANISNAQAIINKAKADVRSSAARVQQLQTQLEQTVMRAPVSGVIAEKLARVGDVTGVPPQTQVGTVIGGTQKLFSIIRDEKLELQAKVPEIQLNQVKIGASVQITSDVDQRVRSQGRVREIQPQVNDQRREATVKIDLPPTTLLKPGMFANAAITTNSAMTMVVPQKAVQSQADGSVIVFTLSSGDIVRSQKVDLENPTNGDKVEIKSGLQLGDRIVVDGAGYLKDGDKVRVAN
>NC_010628.1|WP_012409034.1|3095970_3096852_-|hypothetical-protein
MFNATEILIDAFVNEIREGYRRTYGCFKNDYQDIIAWAGNMALENIANSDALYHNVEHTVLVTLVGQEILRGKHIREGGVSSEDWLHCIISLVSHDIGYVKGVCRLDQEAVGLYSTGKNGKMVSVAPGASDASLTPYHVDRAKLFIDERFGGHKLIDAEAIKSNIELTRFPVPAAEDHQDTKCFAGLVRAADLIGQLSDPRYLKKITSLFYEFEETGVNKVLGYKTPADLRNNYAKFYWNGVYPYIQEGLHYLSLTQQGKQILANLYSNVFVVEHEKQQQEQQKYLEKLGVGS
>NC_010628.1|WP_012409033.1|3094718_3095834_-|ABC-transporter-permease
MDWWRRLKKNPLAQFGAILLLIFYIAVIAADFVAPYDPYASQPNGSLLPPTQIHWVSQSGQFIGPHVYPTTQGDTNLETGDRQLIVDFKKPSPVRLFVSGPEYRLLQMSLPLPPKWDEVTIFPGIPLNWHLFGTTTDAKVNILGTDDQSRDQFSRLLHGGRISMFIGIFGIIITYPLGLLIGGISGYLGGVTDSVIMRLAEVLMTFPSIYLLVTLGAVLPPGLSSTQRFLLIVVITSVISWAGLARVIRGQVLSIKEREFVQASRAMGANPLYIILRHVLPQTASYVVISATLAIPSFIGAEAILSLIGLGIQQPDPSWGNMLSLASNASILVLQPWLIWPPAVLIILTVLAFNLLGDGLRDALDPRSLRR
>NC_010628.1|WP_052304696.1|3094421_3094772_+|hypothetical-protein
MFEVLNSGSGLILAIAFVTSAIAFAISEFAFVISAIAFVTLEFAFVTSEFAFAISEFAFVTSEFAFVTSGFAFVISGFAFVTSEFAFAISTIAFAIIEGLSSQTPRVECISQPITE
>NC_010628.1|WP_012409031.1|3093407_3093749_-|hypothetical-protein
MSTYYPVNENLATQQQPIVQSLDVPSQSNNTEQLLDIAENITAALSKSDTVELVQAGGQTAENIFKVLVQYGGKPVAIILATAVLIAATAIPILAVKVSLGQITQIDNISQTK
>NC_010628.1|WP_012409030.1|3092260_3093286_+|ABC-transporter-permease
MSRSKALQYYIVSRLLLAPLQLLTIITIVFLLLRATPGDPADAILGGRAPEAAKEELRKQLGLNFPLWLQYLNYLGSILRFDLGTSLMSRGQNVWDIIGQYFPATVELAVCSMAVALIVGIAVGTLSASRPGTYFDVGGRLFGIITYALPMFWAGMLLQLIFSVQLGWFPNSNRFPPNLPAPTPVTGLYTIDSLLGGNLTQFFTSLHHLALPSLTLGILLSGIFERIVRVNLKQTLQADYVEAARARGIGENKILASHALKNALIPVITVLGLTFASLLGGAILTEVTFSWPGLANRLYQAIADRDYPTVQGVLVFFGAIVVSASILIDILNAYVDPRIRY
>NC_010628.1|WP_012409029.1|3090538_3092191_+|peptide-ABC-transporter-substrate-binding-protein
MTWFSLSVQRWGRITQFLSLFCLCLFLVVSCAPRPQPSTPPSGSVSSPTGDGRITIGTTAKPRTLDPADAYELASLGLVFNMSDRLYTYEPGSTEIKPQLATALPKVSQDALTYTIPLRQGVVFHDGTPFNAEAMAFTINRFIQNKGKPSFLLADVVDSVKSTSEYELTIKLKKPFAAFPSLLAFPGVCAVSPKAYELGAGKFKPNIFVGTGPYKLAQYGTDSIRFDTFDKYWGEKPANKGVNLQIQTSPVNLFNAFRTGAVDVAYLSLQPDQNRSLEEGGKKGDWQAIAAEGSVVSYLVLNRNQKPLDKLEVRQAIASIIDRPLLNERALLGQADPLYSMIPTTFKVSVPLFKDAYGDANFDQAKKLLTTAGFSKENPAKVQIWYPSSSPTRSLAAQTLKSLVDAKMDGILQFEVTPAEGPTFFKDIAKGLYPGALLDWYPDFLDPDNYVQPFLSCDKGSVAKGCEDGGSQTQGSFYYNEAMNKLIDQQRKELNPEARQKIFAEIQKQVTADVPYVPLWQSKDYVFAQKGVNSVQLNPTQILVYQTIKK
>NC_010628.1|WP_012409028.1|3089458_3090313_+|DNA-adenine-methylase
MNKPINSPFRYPGGKFYARNLILNHIPSHSYYVEPFAGGGSIFFVKDKVNINWLNDIDELLINTLLIIRDQPEELIKFLAGESATKERHTYYKNEFIPQNQLEQAGRWFYLNRTSYSGIMKHQNCYWGYGDKYSMRPENWPRNIRRTSDKLQNVQITNLDFEEVIESVPNGSFLFIDPPYFNADQDKLYAHSFSKDDHFRLCQILNRYKGKIKFLLTYDNNDTIRNLYEWALEIHDKEWNYTISRSDDQKNGESKQDNFKGERYKGKEIFILNYSSLESTSLNS
>NC_010628.1|WP_012409027.1|3088834_3089161_-|hypothetical-protein
MKYFFLSEGWAVARVWASDGLWQVTAWRRQPDIQRMNVCLVEQNELLWLYQVEEAILTVEVKPTIPVTAGTTIGQVVLKRLMSAEQVIERLNTAEAKCQLQNIHLVVQ
>NC_010628.1|WP_012409038.1|3103171_3103558_+|endonuclease-domain-containing-protein
MTNKLNSSNHHLPYNPKLVERAKELRKNMTPAEKKLWYEYLRNFQFRVLRQRPINHFIVDFYCPTLKIVIEVDGDSHFTDESQEYDLERTNILEGYGLKIIRFTNSQVLNHFDSVCEQIQRLIPPSTP
>NC_010628.1|WP_012409039.1|3103999_3107302_+|HEAT-repeat-domain-containing-protein
MLTIPRHTSRSLFFLFCFTLLLTLFLSLPWVNAKETPKPKPQDWQINGIVAALDDGHDQVKKSAFDKLNEYDLQNLKSVVEKPENIADKAFNILKDKSVDSDVRSSAAVALGNLGEAAKPYVKDILDILKDKSVDINVRSSAAEALGNLGEAAKPYVKDILDILKDKSVDSDVRSGAAKALGNLGEAAKPYVKDILDFLKDKSVDSYVRSDAAEALGNLGEAAKPYVKDILDFLKDKSVDKDVRSGAAEALGNLGEAAKPYVKDILDFLKDKSVDKDVRSGAAEALGNLGEAAKPYVKDILDILKDKSVDSYVRSGAAEALGNLGEAAKPYVKDIADILKDKSVDSNVRYGAASALGNLGEAAKPYVKDILDFLKDKSVDSGVRSGAAVALGNLGEAAKPYVKDILDILKDKSVDINVRSSAAEALGNLGEAAKPYVKDIADILKDKSVDSGVRYGAAVALGNLGDAAKPYVKDILDFLKDKSVNSYVPYGAAVALGKIKQLELNEIVVILDSVYYAGQSEFARWRFLTYFLGGGTDEVKTLLTWLGFPKKIPASLPHDQGVKTLNIFAQAWEPSQDFARLREDLAKQIAVVARKVSWQPQDIVILETHYKNLKKAGYSETDSLQAAIVNLKGWQWFFNARITILTHAAFWLLLIFAYPKSPQIQAIFFWNPWVRRILGMGYVGFLLTWVPFFRRKLLEPFKPSLLADAGLDNFHDQSYFPQSQVKVTSGDILPITAALPSIKGQIILEGDSGLGKSMFLRHLLQNQERIVVYLPAQKCDKGVIEAIQEKLHGQAQDAGFLKNLIYSGAIDICIDGLNEVTAETRAKICQFVESYFRGNIIMTTQPLEWTPPSTAKTYYLQPLEQSQIQEFLLSRQQRLPKDAKIQGADYAQACTNYLTEVLKDQQAQEELEAARRILSNPMDLTVVALMLSQGKHPNLFRLQEQQYNLMAAEYLKEWNQEFPLKKFSAAVYEMRLQDKQALPADEFHQVAMSLSDEKYKMVVSRQWQDDKGEAKKEWYFRHDKIMDFFLVQNFLGETDAAEGLLVDRMGDPRFRGVYFLLATLLPLDAAKELREDLIQYAADTKDNTVSNTFVQLLRTR
>NC_010628.1|WP_012409040.1|3107620_3109213_-|ATPase
MNVSLAKDLSVYQLVMGVQVPPKPLSLSPATLLSLVRAQIDLLIEQQIAATLWVKLPPEKIWQSELARYQSSVGAFSIIYTCQLDENEKQGDEEAGGREQVVTERPALSEAVGAASRREGSRSGAGGSEQGENSSPLHPSPSSFSSTHHVTVHLPPDSQLRRENFLMVLSPQFCSLILAHRPLKKRKNQTLGKVNSNKNQPLLIITTVEGRVIQQVLNGIQKAISNDKLPGVYAPESSPIVPADFICPTMPEAATMSQLFAKQLLRQDEINRQIITARTTKLQQINQELHNKEQLQDEYLKNLCQELRIPLTHIKTALSLLNSPNLKPTQRQRYLQMLNTQCDQQNSLITGLLELVQLERNLEGMVLESVRLSDIVPGVVSTYQPLAQEKGIMLAYTVPTELPSIWCVSGGLRQIVINLLHNSIKFTPNGGEVWVRARLQGDYVQLEFRDTGIGIAESEIAKIFERFYRVRTSATEDYAGAGLGLTIVQQLLLRCGGSISVKSKLYEGSTFTVQLATVGDAPRAIAIEHE
>NC_010628.1|WP_012409041.1|3109505_3111008_-|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MKLRELLTAVDSVEQLASHPTLEDVEVRGLKTNSHACGVGDLFIGMPGTRVDGGEFWQSAIASGAVAAIVSPEAAQKNPPTNEAVVISASNITQACAQIASAFYGYPGQKLKLVGVTGTNGKTTTTHIIEFLLIKANLATALMGTLYTRWAGFEQTAAHTTPFAVELQQQLAEAVNAGSEFGVMEVSSHALAQGRVLGCQFEVAVFSNLTQDHLDYHRDMEDYFAAKALLFSPDYLKGRAIINADDSYGKRLIASLDSERVWSYSVNDNSADLWMSDLSYEPNGVSGILHTPKGDVAFRSPLVGQYNLENLLAAVGAALHLGLDLQLVASVIPEFPGVPGRMERVQINSDQDISVIVDYAHTPDSLENLLKAARPFIPGKVICVFGCGGDRDRTKRPIMGRIAAELADVAVVTSDNPRTENPERILEDVLAGIAQTVKPMVICDRATAIRTAILQAQPGDGVLLAGKGHEDYQILGTEKIHFDDREHARDALQQRLNSQA
>NC_010628.1|WP_012409042.1|3111061_3111337_-|glutaredoxin-family-protein
MRLILYSKPGCHLCEGLQEKLEKIQNLSFELEIRDITTRDDWFSAYEYEVPVLYLSNHRGAEDTEEKPLPRPSPRASVQQLEQMLRKYLAN
>NC_010628.1|WP_012409043.1|3111434_3111623_+|DUF4089-domain-containing-protein
MRREGFDVGEYVDLMALLLDLQLRDEYRDEVVANFERISAIANLVNSFPLPEEIEVAPVFEP
>NC_010628.1|WP_012409044.1|3111725_3112352_+|DUF4328-domain-containing-protein
MNNFNAASSLKSVGVGRLLVRLLWVLLGFGIASTLFSLLEVMAKPLYQLLTSIDKLVGIVLLFISLISIIVFLIWLYRLHADLKNLFKEYLITPGGAIARFIIPIYSLWGIANTLSTFADRFKAEGGDLTRLSEQVRSLIGPLYGFMIGSNVLNRIALRIAVKNPQDEFLPFWFLLSCILELGSTAILLQLAKTMQTAIIQKAKSAIS
>NC_010628.1|WP_012409045.1|3112362_3113769_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-A
MNFDSVDAITISAAVREGKVSAVEVTKAALARIATRNHLFNCFTAITAETALTDAARIDREITQGNNPGTLAGVPFAVKNLFDIAGLTTLAGSKINADNPAATQDATAIAKLKQAGAVLVGALNMDEYAYGFVTENSHYGATHNPHDLQRVAGGSSGGSAAAVAAGLVPLTLGSDTNGSIRVPAALCGVFGLKPTYGRLSRAGVALFSSSFDHIGPFARSVQDIATVFDVLQGEDDRDPICTKRPPELVLPQLKQDISDIRIAIAADYFTKGAEPEALAAVQKVADALNVTEYVTIPEAHRARAAAFVITASEGANLHLDKLRRQSPPKVSRPQDFDPATRDRFLAGALIPSSWYLQAQRFRKWYRDRVREVFQNVDVILAPTTPISAPLIGQQTMILDGEEILVRPHLGLFTQPLSFIGLPVLSVPIQRPNALPLGVQLIAAPYNEALILRVAAALEVKGVVSAPIV
>NC_010628.1|WP_041565354.1|3113837_3114236_-|hypothetical-protein
MNDYKDSMQNSLKLGFFIQPVHPLSRFYGDVLREDREAVVLADQPDSELSTKRCIERLVIAGTPQSVADQILAFRNEVGAFGTLLYTGHDWTDPALARRSMELMANEVWTRIDQAAHGTTPKGQTDGKAFSV
>NC_010628.1|WP_148220431.1|3115284_3115791_-|N-acetyltransferase
MDIRYETLSDYTVIAEVNTLAFGQENEAKLVEKIRRSDRYIPELSLVAEIENVVVGHILFSYIDLVGEETLQVIGLAPLAVYPQFQRQGIGSALIKAGLEIAEAKKEAIVIVLGHPHFYTRFGFQPSVVYEIESPFPVPEDVFMVKPLQSYQKRYKGKVFYPSTFDGV

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Crispr_ID: NC_010628_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_14

3128838-3128938

Orphan

A:N

Consensus_repeat	Method
AAAAGCATGAAAAAACCCGGCTTAATCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_14

>merge|NC_010628|14|3128838-3128938|CRISPRCasFinder
AAAAGCATGAAAAAACCCGGCTTAATCGGGTAGATGAACTGTATATCGAATTCAATTGTAATCACATCATTAAAAGCATGAAAAAACCCGGCTTAACCGGG

>NC_010628|14|14|3128838-3128938|CRISPRCasFinder
AAAAGCATGAAAAAACCCGGCTTAATCGGG	TAGATGAACTGTATATCGAATTCAATTGTAATCACATCATT
AAAAGCATGAAAAAACCCGGCTTAACCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012409061.1\|3133350_3134517_+\|ferrochelatase	unknown	unknown	gnl\|CDD\|178068
NC_010628.1\|WP_012409064.1\|3137054_3137606_-\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NC_010628.1\|WP_012409051.1\|3123310_3124048_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_010628.1\|WP_012409062.1\|3134718_3135258_-\|DUF4126-domain-containing-protein	unknown	unknown	gnl\|CDD\|379253
NC_010628.1\|WP_012409047.1\|3115790_3116300_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_010628.1\|WP_012409066.1\|3138902_3140432_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NC_010628.1\|WP_012409063.1\|3135718_3137014_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|180954
NC_010628.1\|WP_041565355.1\|3120670_3121312_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_010628.1\|WP_012409053.1\|3125062_3125794_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_010628.1\|WP_012409048.1\|3119428_3120442_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176237
NC_010628.1\|WP_012409054.1\|3125950_3126361_+\|response-regulator	unknown	unknown	gnl\|CDD\|381118
NC_010628.1\|WP_012409050.1\|3121334_3122372_-\|NADP(H)-dependent-aldo-keto-reductase	unknown	unknown	gnl\|CDD\|381320
NC_010628.1\|WP_012409058.1\|3130076_3131351_+\|type-IV-pilus-twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|225364
NC_010628.1\|WP_012409065.1\|3137763_3138780_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NC_010628.1\|WP_012409052.1\|3124235_3124982_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NC_010628.1\|WP_012409060.1\|3132632_3133256_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225136
NC_010628.1\|WP_012409057.1\|3128972_3129347_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_083782471.1\|3131566_3132415_+\|circadian-clock-protein-KaiB	unknown	unknown	gnl\|CDD\|239276
NC_010628.1\|WP_012409056.1\|3127593_3128721_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|272978
NC_010628.1\|WP_012409055.1\|3126665_3127337_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|213747

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012409061.1\|3133350_3134517_+\|ferrochelatase	gnl\|CDD\|178068	PLN02449, PLN02449, ferrochelatase.	0
NC_010628.1\|WP_012409064.1\|3137054_3137606_-\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	1.38184e-45
NC_010628.1\|WP_012409051.1\|3123310_3124048_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	8.57777e-24
NC_010628.1\|WP_012409062.1\|3134718_3135258_-\|DUF4126-domain-containing-protein	gnl\|CDD\|379253	pfam13548, DUF4126, Domain of unknown function (DUF4126).	5.77729e-33
NC_010628.1\|WP_012409047.1\|3115790_3116300_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.00903e-14
NC_010628.1\|WP_012409066.1\|3138902_3140432_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NC_010628.1\|WP_012409063.1\|3135718_3137014_-\|adenylosuccinate-lyase	gnl\|CDD\|180954	PRK07380, PRK07380, adenylosuccinate lyase; Provisional.	0
NC_010628.1\|WP_041565355.1\|3120670_3121312_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	3.48381e-34
NC_010628.1\|WP_012409053.1\|3125062_3125794_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.54362e-26
NC_010628.1\|WP_012409048.1\|3119428_3120442_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176237	cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NC_010628.1\|WP_012409054.1\|3125950_3126361_+\|response-regulator	gnl\|CDD\|381118	cd17580, REC_2_DhkD-like, second phosphoacceptor receiver (REC) domain of Dictyostelium discoideum hybrid signal transduction histidine kinase D and similar domains. Dictyostelium discoideum hybrid signal transduction histidine kinase D (DhkD) is a large protein that contains two histidine kinase (HK) and two REC domains on the intracellular side of a single pass transmembrane domain, and extracellular PAS and PAC domains that likely are involved in ligand binding. This model represents the second REC domain and similar domains. DhkD activates the cAMP phosphodiesterase RegA to ensure proper prestalk and prespore patterning, tip formation, and the vertical elongation of the mound into a finger, in Dictyostelium discoideum. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	7.27007e-37
NC_010628.1\|WP_012409050.1\|3121334_3122372_-\|NADP(H)-dependent-aldo-keto-reductase	gnl\|CDD\|381320	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins. Escherichia coli Tas protein is the prototype of this family. It is an NADP(H)-dependent aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NADP(H) as a hydride donor.	0
NC_010628.1\|WP_012409058.1\|3130076_3131351_+\|type-IV-pilus-twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0
NC_010628.1\|WP_012409065.1\|3137763_3138780_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	8.13046e-60
NC_010628.1\|WP_012409052.1\|3124235_3124982_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	3.18833e-24
NC_010628.1\|WP_012409060.1\|3132632_3133256_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	3.94146e-28
NC_010628.1\|WP_083782471.1\|3131566_3132415_+\|circadian-clock-protein-KaiB	gnl\|CDD\|239276	cd02978, KaiB_like, KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensory domain with a TRX fold which is involved in the SasA-KaiC interaction. This domain shows high sequence similarity with KaiB. However, the KaiB structure does not show a classical TRX fold. The N-terminal half of KaiB shares the same beta-alpha-beta topology as TRX, but the topology of its C-terminal half diverges.	4.15178e-30
NC_010628.1\|WP_012409056.1\|3127593_3128721_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|272978	TIGR00236, UDP-N-acetylglucosamine_2-epimerase, UDP-N-acetylglucosamine 2-epimerase. This cytosolic enzyme converts UDP-N-acetyl-D-glucosamine to UDP-N-acetyl-D-mannosamine. In E. coli, this is the first step in the pathway of enterobacterial common antigen biosynthesis.Members of this orthology group have many gene symbols, often reflecting the overall activity of the pathway and/or operon that includes it. Symbols include epsC (exopolysaccharide C) in Burkholderia solanacerum, cap8P (type 8 capsule P) in Staphylococcus aureus, and nfrC in an older designation based on the effects of deletion on phage N4 adsorption. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_010628.1\|WP_012409055.1\|3126665_3127337_+\|peptidoglycan-binding-protein	gnl\|CDD\|213747	TIGR02869, Spore_cortex-lytic_enzyme, spore cortex-lytic enzyme. Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination. [Cellular processes, Sporulation and germination].	3.56956e-12

>NC_010628.1|WP_012409056.1|3127593_3128721_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MTNKKRVCIILGTRPEAIKLAPVIQVFQKSSAFDSQVILTGQHREMVEQVMQLFNIKADYDLEIMQVQQSLNDITCLSLQGLEALFKEKKPDLVVVQGDTTTAFAAALAAFYQKIPIGHVEAGLRTDDIFNPYPEEANRRLISQITQLHFAPTPWAVENLHRSGVLGEIHMTGNTVIDALLNVAATQAVCNVPGLDWDSYRVLLATVHRRENWGEPLQAIAEGFLQILDKFPDTALLLPLHRNPTVRVPLQELLDNHPRIFLTDPLDYGELVGAIGRSHLLLTDSGGLQEEAPSLGKPVLVLRDTTERPEAVVAGTAKLVGTTSENIFASAAELLSDPDAYEAMANAINPFGDGHAAERILQIVQNYLGVLSEST
>NC_010628.1|WP_012409055.1|3126665_3127337_+|peptidoglycan-binding-protein
MEYLAYSHMFIAQEEASGNTKYNLPKSQLNGKEPLKSSNIVIAEKQVSANSKTKFNWKKLLKSSAWLALAGVGVLLLAATQIQISSAAYVKTNGSCLRIRTGPSTNYSYIDCVSNGATLPAIERYENGFARLSTGRYVYARWVADKPNNPPVTSRPGGVGGSVILTRGSRGQLVRDVQTALGNLRVDGIYGQETVNQVRSFQASKGLLVDGTVGPETRAALGI
>NC_010628.1|WP_012409054.1|3125950_3126361_+|response-regulator
MSNQSMSFKGLRLLVVDDDRDTRTLLTFLFELEGAEIITAASAGDAIEIMSFFKPDILISDIYLPDENGCSLLIKLRNLEAKRGRKIPAIALTASAFDEDRNRALLAGYDIYRCKPIDLDDLSSTVASLVMLEEYA
>NC_010628.1|WP_012409053.1|3125062_3125794_+|Crp/Fnr-family-transcriptional-regulator
MSENTLKPQVNKLLAALPTNDYERLIPHLKLVSLPTRQVIYEPGEPIKQVYFPQNAVVSIVTGMKDGSTVEVGIVSNEGMVGIPVILGGSTTTTKAFVQVAGSGVQIDADVLRTEFNRGGAIQNLLLRYIRATYTELTQGCACNRLHTLEERLARWLLTVSDRLESEEFPLTQEFIAQMLGVRRSGVTVAASALSRAGMISYQRGQINILNREDLEETSCECYRVIQNEFARLLKNQPKRDRR
>NC_010628.1|WP_012409052.1|3124235_3124982_+|Crp/Fnr-family-transcriptional-regulator
MSLDKNRFQQPPNKLLAALPASDYERLVPHLKLVPLPVQQILYQVAEPITQVYFPDKAVVSIVTTMEDGSTAEVGIVSNEGMVGIPVILGDNTTTTTAFVQISGAAMQIDADVVRAEFNRGGAIQSLLLCYVQAIYSELAQGAACNRLHTLDERLARWLLTVSDRLESEDFPLTQEFIAQMLGVRRSGVTVAASTLSRAGMISYQRGHISIMNREDLEATSCECYQVIQKEFARLLGMKPSNRAKKFF
>NC_010628.1|WP_012409051.1|3123310_3124048_+|Crp/Fnr-family-transcriptional-regulator
MSLNKNTLEQPANRLLAALPATDYERLFPHLKLVSLPLRKFLYEAGEPITQVYFPNKAVVSIITTMEDGSTVEVGLVSSEGMVGMPIILGDNTTTTTAFVQIPDSAMQLDADILRSEFNRGTALQSVLLRYVQGVYTQIAQGSACNRLHKLERRLARWLLTVSDRLESDEFPLTQEFISQMLGVRRAGVTEAANILSEAGIITYHRGQINILNREALEKTSCECYQVIENEFVRLLGNQPNQRQK
>NC_010628.1|WP_012409050.1|3121334_3122372_-|NADP(H)-dependent-aldo-keto-reductase
MKYNQLGKSDLKVSEICLGTMTYGQQNTIEEAHEQLDYSIAQGVNFIDAAEMYPVPTSAETYGLTETYIGEWLKRQQREKLIIATKISGPGRGFKWLRNGAKAIDRDNIKQAVDDSLKRLQTDYIDLYQIHWPDRYVPRFGQTVFDPTQVGETVPIAEQLAVFADVIKAGKIRYIGLSNETPWGVAQFSNAAKQLGLPKIVSIQNAYNLLNRVFDGALAEAVYYEEIGLLAYSPLAFGLLTGKYLNGKPEKARFSLFENFGQRYLKPKVSEAVAAYIDIAKRYQLSPAHLALAFVRSRWFVPSTIIGATTLEQLKENLESVDVVLSKDILEELDIVHAQSPNPAP
>NC_010628.1|WP_041565355.1|3120670_3121312_-|glutathione-S-transferase-family-protein
MCPYAHRTRLVLQEKGIDFDLIEIDLQNKPEGFTKVSPYGKVPALTHDDNRVWESAVINEYLDEVFPNPPLLPNSSIARAQARIWIDFANTRFVPAFSTLLRSSDPQKQEEAKQELYKHLEFIENEGLAKLSGEGPYWFGESISLVDFTYFPWFERWAALKQYRGFGIPEEFTRVRQWKHALKERESVKVIAHSKEFYIERYAKFAAPTLAAV
>NC_010628.1|WP_012409048.1|3119428_3120442_+|NAD(P)-dependent-alcohol-dehydrogenase
MKAYEIKSNAGIDALALVDRAEPKPTAGQVLIQVKATSLNYRDLLVAEGAYGAGQKYPLIPLSDGAGEVVAVGEGVTRVKIGDRVAGIFFQDWIYGSLTKEKMKSDLGGGIDGMLAEYVVLHQDALVILPDYLSYIEGATLPCAAVTAWHGLVTKGNIGAGDNVLLLGTGGVSIFALQFAKIHGARAIITSSSDDKLARAKQLGADETINYKTTPDWEKQVYQLTNRTGVDHVVEVGGAGTLPKSLQAVRIGGRISLIGVLSGRGSEIDPMPILFKSLTVQGIYVGSREMFEAMNQAMQQHQIKPIIDRVFPFAEAREAYHYLKSAAHFGKIVIRNS
>NC_010628.1|WP_012409047.1|3115790_3116300_-|GNAT-family-N-acetyltransferase
MLKIIQVEIDEHKSHIHELFWEYFNETKLIASHQFGINLDVNTFFEQYMTQLHEFIPPSGRLLLGQYEAKIAGCACLRKIGEDIGELKRMYVRPEFRKKGIGKALLETIINEASNIGYSKIRLDSAPSAKEAHTLYRVCGFQDIEPYLEKTEIPLEYRAKWVFMELVLK
>NC_010628.1|WP_012409057.1|3128972_3129347_-|hypothetical-protein
MVSAESSNLGKTYSLLMIKSFLIWTFTLAVCLLVVGFPLVVLMATVGCLLSIILQSVMPVSAVLLVAGALIMFNVMAVVFAAGVLTIKGVHPSEVKWLSWLHGEADQMQTTVYAACPLTCEIKM
>NC_010628.1|WP_012409058.1|3130076_3131351_+|type-IV-pilus-twitching-motility-protein-PilT
MTESQSPSNSSPVTERNLPPMPPPPPTFSTQRQMTQTLDMSMDRSANTPVAGHRPVSPPPIPSSVPSKTSSAGPTLEKLIREAYDQGYSDLHLGVGEVPRFRSRGEIQSWDYPEADKEAFMNWLREVMSEAEIQRFEEHLEFDGATQYDFARVRINVFGTLRGPAMVLRLIPLKILTMEQLRLPPVFRDICHHHKGLILVTGPTGSGKSTTMAAMVDYINKEMAKHIITIEDPIEFIHQSRKSLVKQREVGMHTRKFDNALKAALREDPDLILVGEMRDKETVNTALKAAQTGHLVMGTLHTNSAVKTIERILNLYSGDEQDAMRVAISESLVAVIAQGLCRTTDGKRAAFHDVLINTEAIKEWIKDGKYDEIGELMKQAGFDGMITMNQSLLNLYQEGRITEETALEMSPTPNEMAQFLRGRV
>NC_010628.1|WP_083782471.1|3131566_3132415_+|circadian-clock-protein-KaiB
MTTNKLSTPQLFKGIALFTPGGDLIYCIDPSKQGRWHLHLCSALQEILDLPEPPHFLVPCYTATIDHWLDPRTQQVRTFAEAYPAVIRHQALLNAIFGTGELVWQAAPWQEGLCDRMVLTSYRSSFGQLWEDHDLIVRLDLSEPVPKYHQPVIVQKKEVITQGYVLRLFVAGHSSTTERILQNLHELLERSLGHPYTLKVIDVLSHPEQAELNQVSATPTLVKVWPHPIRRIVGELDHVEKILQMLAAKGKILSFITKLSVKSEMQRFERWQLFLREIKQSL
>NC_010628.1|WP_012409060.1|3132632_3133256_-|class-I-SAM-dependent-methyltransferase
MATILRDWSYRYQWLYDSISRLAALSVGGEARFRQLALQALTIHSDTQVLDLCCGSGQTTQFLVKISQNVTGLDASPKSLQRARLNVPEASYVEAFAEEMPFTDNLFDVVHISVALHEMQPQQLRKIIDEVYRVLKPGGIFTLVDFHAPTNPILWPGISLFLLLFETETAWQLLKTDLAGLLTETGFDVSKPILYAGGSLQVIQAKK
>NC_010628.1|WP_012409061.1|3133350_3134517_+|ferrochelatase
MGRVGVLLLNLGGPDKLEDVGPFLYNLFSDPEIIRLPFRWLQKPLAWFIASRRTRTSQQNYKQIGGGSPLRRITEAQGEALKKQLGYLGQEANIYVGMRYWHPYTEEAIAQITQDNIEHLVILPLYPQFSISTSGSSFRLLDKLWQEEPKLQPIEYTVIPSWYKQPGYLQAMAELIAQELEQFPNPDEVHIFFSAHGVPKSYVEEAGDPYQQEIEECTALIMQTLNRPNAHTLAYQSRVGPVEWLQPYTEDALKELGAQGVKDLVVVPISFVSEHIETLQEIDIEYREVAEESGIHNFRRVPAPNTHPVFINALAELVIDALKNPSFKLSQAAQMKKMVKMYPQERWEWGLTTSAEVWNGRIAMLGFIALIIELITGHGFLHMIGLLQ
>NC_010628.1|WP_012409062.1|3134718_3135258_-|DUF4126-domain-containing-protein
MIEILATLSASAAAGMRIGIPLLIIGLLQGSNLWSQVPILSHISPPILLGCLTFWSLVELLASKKLWGQRLLQLVQLFMSPIVGAIMGLAVANATATPNWLIACIGGSLALVLQLVQVGWFYRLRGLPLWVVFLQDTLCIALVLFAFDAPWQGGLIALILLWFAVRSAKQWYDWYHTRG
>NC_010628.1|WP_012409063.1|3135718_3137014_-|adenylosuccinate-lyase
MIERYTLPEMANLWSETYKLKTWLQVEIAVCEAQAELGYIPSQAVEEIKAKADFDPKRVLEIEAVVRHDVIAFLTNVNEYVGEAGRYIHLGLTSSDVLDTALALQLVASLDLLLQRLEDLIQVIREKAREHRHTVMAGRSHGIHAEPITFGFKLAGWLAEVLRHQERLRILRQTIAVGKISGAVGTYANVEPRVEAIACQKLGLQPDTASTQVISRDRHADYVQQLALVAASIERFAVEIRNLQKTDVLEVEEFFSKGQKGSSAMPHKRNPIRSERLTGMARLVRSHAGAALENVALWHERDISHSSVERVILPDACTLTHFMLSEITDLVKNLLVYPENMERNLNCYGGVVFSQKVLLALIDKGSSREEAYAIVQESAHAAWNKPGGNFQNLINKDPRVTQKLSPAELEVCFDPQQHLQHLEEVYQRLGI
>NC_010628.1|WP_012409064.1|3137054_3137606_-|DUF421-domain-containing-protein
MEKWFFIDWQAIFVPSISVFELIIRGSLVYLALFSVLRFLPSRQLGTLGITDLLVVVLFAEAAQNAMASNYTSITEGAILVGTVIFWSYLLNWLGYKIPQFQRFINQPPLLLVKNGRMIQRHLQRELITDDELMSKLRQQGVEFLADVKFAYMEADGRISIITFDSKTNSVPEPKAALKIDLH
>NC_010628.1|WP_012409065.1|3137763_3138780_-|YihY/virulence-factor-BrkB-family-protein
MNLQAIWKLFQETFKEWSEDKASRLAAALAYYTIFSIAPLLIIVIAIAGAVFGEEAARGQIVGQIQGLVGPDGAEFIQTAIQNANKPQTGAIASIISVVVLLLGATGLFTELQDSLNTIWEVKPKPGRGVTNIIRLRILSFAMVIGIGFLLLVSLVISTALSALVTYFSNLLPGVDFLWQILNFLLSFAITTFLFGLIFKVLPDVKIGWSDVLIGAMLTSFLFSIGRFLLGQYLGNGSFGSAYGAAGSLVVILAWVNYAAQILFFGAEFTQVYARRYGSGITPTKHAIPLSDNTEYNGKAKTRQSSTNKKSSSNLINRLFQSFKKPKRLKQKRRNPRF
>NC_010628.1|WP_012409066.1|3138902_3140432_-|YifB-family-Mg-chelatase-like-AAA-ATPase
MLARVWSASIVGIDAVKVGVEVDVSGGLPGIVVLGLPDSAIQESRERVKATLKNAGFAFPMRKIVINLTPADLRKEGPCFDLPISVGILAASEQVSADLLGDYLFLGEMSLDGSLRPVAGVLPIAAAAQKMGIAGLVIPADNAQEAAVVQGLVVYGCKHLSDVVNLLNNPGRYKPVQMDSTVDTATVSYPGADLHDVKGQAHARRALEIAAAGGHNLIFVGPPGSGKTMLARRLPGILPPLSFAESLEVTRIHSVAGLLKNRGSLVRDRPFRSPHHSASGPSLVGGGSFPRPGEISLSHRGVLFLDELTEFKRDVLEFLRQPLEDGYVTISRTRLSVMFPAQFTLVASTNPCPCGYYGDTIQQCTCSPRQREQYWAKLSGPLMDRIDLQVAVNRLKPEEITQQPTGETSTSVLQRVQQASDRAITRFQEEANLRCNAQMQSRHLQKWCKLDDASRNLLEVAIRKLGLSARASDRILKVARTIADLAGDDELKTNHVAEAIQYRTIDRMQ

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Crispr_ID: NC_010628_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_15

3338172-3341197

TypeI-D

A:N

Consensus_repeat	Method
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CRISPRCasFinder
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CRT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	PILER-CR

41 spacers

cas2,cas1,cas4,cas6,2OG_CAS,cas3,csc1gr5,csc2gr7,cas10d

The CRISPR arrays of NC_010628_15

>merge|NC_010628|15|3338172-3341197|CRISPRCasFinder,CRT,PILER-CR
TATTTCAACCCTAATAGGGATTTTGATGAATTGCAATTCCTCCTTCCTCTGGCTCTGCCACCGTTCAGCAACTTGGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATATATTATTTCACAACTGGTAAAAACGCTAAAGGTTTAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATGTTAAACTGGTCTGCTTTGCCGATACCCAAATATTGCTAGGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATGAAATCAGAAACATCTTTGATTTTTTTGACCATGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTTTTTGGGGAAGAGGTAATCTGAAACAGAATTTAGTATTTGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATGTTGTTACTTAATCCGTCAAATAGTCCCATTAGATGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTTTGTGTTACTTGAATTACTTTGTTGTAATATGCTGGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATCAGCAACGTATGCTGTGGGATGCTGGATATGCACGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTTGCATATCTCCATCCAACTGTATTCAGCTGAAAAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATCTTCGGCATAACCATTCTTCCACCTCCAGTACCAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATATAAACTAAATGCCAGAAAAGATTAGGGTCAATCTGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTTCTGGTTTGACTTTTTCTATTTTCAAGAGTTGCCAAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATAAAAGCCTGGGCTAAATCAATTCCGTGAACAGTTCCAAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTTTATTCCGCCCTGGTTTGAATTCTGATGGCACCGTTGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATCTAATCCTGGGCAATGTCCGGCGTATTGGCTTCGCGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTCTCATGAATGCCCTACTTATACATTTTTTCAGGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATCTTATAGCTTGTGGCAGGGTAGCCCATGTAGGCTTGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATAACCAATAAGCCGGACACTGAGAAGGATTGGCGGGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTCCCTTTGATTGCTGCTGTTCCTTTTGCTTCACAAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATGCATTGTGATTTCCATGCTTGCAGTACTCCATCTGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTTATTGCAGATATGATATGTGCAGTCAGGAATATAATTAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTCTATTGTTGTTGTTTCAAAGTCCAAAAAAAGCATTAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTCGCGCAACTTATCCGCCCAAAGCTTTGCAGCCATTTGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATACTTACTCGCAGTTGAGTCTGGGGATTATTTCAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTTTTCCATAATTCTTTTGCAAGTATTCCTTCCCTTGGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATCTGAGTTTGTGGTGCTTCCCCGCGAATCTCGACAAATGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATGTAAATATGCTGGTATTTGAAGCAAAACTTGAAGGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTCTATCAGATAAACTATCAGGAGTAGGATAGTCAAACTCGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATGCTCACGATCTGCTCACGTCTCTACAATAAAAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATCTTTCGCTGAATGGGCAGTTAGTCCAGCAGGAAGTGGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATCTATATGTTGCGAGGCTATTGTATTGTAGGTTAGAACAAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTCTTGGTTTGAATAATTCCAATGCTTCCAGTACCTGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTTGGCACTCCCGTAATGGTTCTAAATGCTTTTGTTGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTTTACCGTGCTGCTGATGGCGATCGCGAGTATTTCGATGAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATCCTTTCTAGGGAGCGCCCCTAGTATTATTGCTTGCGGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATCCTACCGTCGCCCCGGTGGCAAGCCTCTGCGGCGTGGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATCCATTTCTGTGCCTCATTTCGTATCTGTTTCCGTAAAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATTTGCACCATCAATTGTTTGTGATGTTGTTGTGGCGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATAAAAGACGACTGGGAACACAAGCGGACACAGTACGGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATATGAATCAACAATGATCCGGCGCCATTGAGTATTAAGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAATCCTATTCTTCAATTTTTACGATGTCTTCCAAGCCGTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT

>NC_010628|15|15|3338172-3341197|CRISPRCasFinder
TATTTCAACCCTAATAGGGATTTTGATGAATTGCAAT	TCCTCCTTCCTCTGGCTCTGCCACCGTTCAGCAACTTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ATATTATTTCACAACTGGTAAAAACGCTAAAGGTTTA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GTTAAACTGGTCTGCTTTGCCGATACCCAAATATTGCTAG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GAAATCAGAAACATCTTTGATTTTTTTGACCAT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTTTGGGGAAGAGGTAATCTGAAACAGAATTTAGTATTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GTTGTTACTTAATCCGTCAAATAGTCCCATTAGAT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTGTGTTACTTGAATTACTTTGTTGTAATATGCTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CAGCAACGTATGCTGTGGGATGCTGGATATGCAC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTGCATATCTCCATCCAACTGTATTCAGCTGAAAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTTCGGCATAACCATTCTTCCACCTCCAGTACCA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ATAAACTAAATGCCAGAAAAGATTAGGGTCAATCT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTCTGGTTTGACTTTTTCTATTTTCAAGAGTTGCCAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	AAAAGCCTGGGCTAAATCAATTCCGTGAACAGTTCCAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTATTCCGCCCTGGTTTGAATTCTGATGGCACCGTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTAATCCTGGGCAATGTCCGGCGTATTGGCTTCGC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTCATGAATGCCCTACTTATACATTTTTTCAG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTTATAGCTTGTGGCAGGGTAGCCCATGTAGGCTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	AACCAATAAGCCGGACACTGAGAAGGATTGGCGG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCCCTTTGATTGCTGCTGTTCCTTTTGCTTCACAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GCATTGTGATTTCCATGCTTGCAGTACTCCATCT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTATTGCAGATATGATATGTGCAGTCAGGAATATAATTA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTATTGTTGTTGTTTCAAAGTCCAAAAAAAGCATTA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCGCGCAACTTATCCGCCCAAAGCTTTGCAGCCATTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ACTTACTCGCAGTTGAGTCTGGGGATTATTTCA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTTCCATAATTCTTTTGCAAGTATTCCTTCCCTTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTGAGTTTGTGGTGCTTCCCCGCGAATCTCGACAAAT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GTAAATATGCTGGTATTTGAAGCAAAACTTGAAG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTATCAGATAAACTATCAGGAGTAGGATAGTCAAACTC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GCTCACGATCTGCTCACGTCTCTACAATAAAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTTTCGCTGAATGGGCAGTTAGTCCAGCAGGAAGTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTATATGTTGCGAGGCTATTGTATTGTAGGTTAGAACAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTTGGTTTGAATAATTCCAATGCTTCCAGTACCT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTGGCACTCCCGTAATGGTTCTAAATGCTTTTGTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTACCGTGCTGCTGATGGCGATCGCGAGTATTTCGATGA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCTTTCTAGGGAGCGCCCCTAGTATTATTGCTTGCG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCTACCGTCGCCCCGGTGGCAAGCCTCTGCGGCGTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCATTTCTGTGCCTCATTTCGTATCTGTTTCCGTAAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTGCACCATCAATTGTTTGTGATGTTGTTGTGGC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	AAAAGACGACTGGGAACACAAGCGGACACAGTACG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ATGAATCAACAATGATCCGGCGCCATTGAGTATTAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCTATTCTTCAATTTTTACGATGTCTTCCAAGCC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT

>NC_010628|15|4|3338172-3341197|CRT
TATTTCAACCCTAATAGGGATTTTGATGAATTGCAAT	TCCTCCTTCCTCTGGCTCTGCCACCGTTCAGCAACTTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ATATTATTTCACAACTGGTAAAAACGCTAAAGGTTTA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GTTAAACTGGTCTGCTTTGCCGATACCCAAATATTGCTAG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GAAATCAGAAACATCTTTGATTTTTTTGACCAT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTTTGGGGAAGAGGTAATCTGAAACAGAATTTAGTATTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GTTGTTACTTAATCCGTCAAATAGTCCCATTAGAT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTGTGTTACTTGAATTACTTTGTTGTAATATGCTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CAGCAACGTATGCTGTGGGATGCTGGATATGCAC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTGCATATCTCCATCCAACTGTATTCAGCTGAAAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTTCGGCATAACCATTCTTCCACCTCCAGTACCA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ATAAACTAAATGCCAGAAAAGATTAGGGTCAATCT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTCTGGTTTGACTTTTTCTATTTTCAAGAGTTGCCAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	AAAAGCCTGGGCTAAATCAATTCCGTGAACAGTTCCAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTATTCCGCCCTGGTTTGAATTCTGATGGCACCGTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTAATCCTGGGCAATGTCCGGCGTATTGGCTTCGC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTCATGAATGCCCTACTTATACATTTTTTCAG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTTATAGCTTGTGGCAGGGTAGCCCATGTAGGCTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	AACCAATAAGCCGGACACTGAGAAGGATTGGCGG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCCCTTTGATTGCTGCTGTTCCTTTTGCTTCACAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GCATTGTGATTTCCATGCTTGCAGTACTCCATCT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTATTGCAGATATGATATGTGCAGTCAGGAATATAATTA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTATTGTTGTTGTTTCAAAGTCCAAAAAAAGCATTA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCGCGCAACTTATCCGCCCAAAGCTTTGCAGCCATTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ACTTACTCGCAGTTGAGTCTGGGGATTATTTCA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTTCCATAATTCTTTTGCAAGTATTCCTTCCCTTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTGAGTTTGTGGTGCTTCCCCGCGAATCTCGACAAAT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GTAAATATGCTGGTATTTGAAGCAAAACTTGAAG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTATCAGATAAACTATCAGGAGTAGGATAGTCAAACTC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GCTCACGATCTGCTCACGTCTCTACAATAAAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTTTCGCTGAATGGGCAGTTAGTCCAGCAGGAAGTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTATATGTTGCGAGGCTATTGTATTGTAGGTTAGAACAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTTGGTTTGAATAATTCCAATGCTTCCAGTACCT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTGGCACTCCCGTAATGGTTCTAAATGCTTTTGTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTACCGTGCTGCTGATGGCGATCGCGAGTATTTCGATGA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCTTTCTAGGGAGCGCCCCTAGTATTATTGCTTGCG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCTACCGTCGCCCCGGTGGCAAGCCTCTGCGGCGTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCATTTCTGTGCCTCATTTCGTATCTGTTTCCGTAAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTGCACCATCAATTGTTTGTGATGTTGTTGTGGC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	AAAAGACGACTGGGAACACAAGCGGACACAGTACG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ATGAATCAACAATGATCCGGCGCCATTGAGTATTAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCTATTCTTCAATTTTTACGATGTCTTCCAAGCC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT

>NC_010628|15|5|3338247-3341197|PILER-CR
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ATATTATTTCACAACTGGTAAAAACGCTAAAGGTTTA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GTTAAACTGGTCTGCTTTGCCGATACCCAAATATTGCTAG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GAAATCAGAAACATCTTTGATTTTTTTGACCAT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTTTGGGGAAGAGGTAATCTGAAACAGAATTTAGTATTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GTTGTTACTTAATCCGTCAAATAGTCCCATTAGAT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTGTGTTACTTGAATTACTTTGTTGTAATATGCTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CAGCAACGTATGCTGTGGGATGCTGGATATGCAC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTGCATATCTCCATCCAACTGTATTCAGCTGAAAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTTCGGCATAACCATTCTTCCACCTCCAGTACCA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ATAAACTAAATGCCAGAAAAGATTAGGGTCAATCT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTCTGGTTTGACTTTTTCTATTTTCAAGAGTTGCCAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	AAAAGCCTGGGCTAAATCAATTCCGTGAACAGTTCCAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTATTCCGCCCTGGTTTGAATTCTGATGGCACCGTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTAATCCTGGGCAATGTCCGGCGTATTGGCTTCGC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTCATGAATGCCCTACTTATACATTTTTTCAG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTTATAGCTTGTGGCAGGGTAGCCCATGTAGGCTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	AACCAATAAGCCGGACACTGAGAAGGATTGGCGG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCCCTTTGATTGCTGCTGTTCCTTTTGCTTCACAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GCATTGTGATTTCCATGCTTGCAGTACTCCATCT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTATTGCAGATATGATATGTGCAGTCAGGAATATAATTA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTATTGTTGTTGTTTCAAAGTCCAAAAAAAGCATTA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCGCGCAACTTATCCGCCCAAAGCTTTGCAGCCATTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ACTTACTCGCAGTTGAGTCTGGGGATTATTTCA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTTCCATAATTCTTTTGCAAGTATTCCTTCCCTTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTGAGTTTGTGGTGCTTCCCCGCGAATCTCGACAAAT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GTAAATATGCTGGTATTTGAAGCAAAACTTGAAG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTATCAGATAAACTATCAGGAGTAGGATAGTCAAACTC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	GCTCACGATCTGCTCACGTCTCTACAATAAAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTTTCGCTGAATGGGCAGTTAGTCCAGCAGGAAGTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CTATATGTTGCGAGGCTATTGTATTGTAGGTTAGAACAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TCTTGGTTTGAATAATTCCAATGCTTCCAGTACCT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTGGCACTCCCGTAATGGTTCTAAATGCTTTTGTT
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTTACCGTGCTGCTGATGGCGATCGCGAGTATTTCGATGA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCTTTCTAGGGAGCGCCCCTAGTATTATTGCTTGCG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCTACCGTCGCCCCGGTGGCAAGCCTCTGCGGCGTG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCATTTCTGTGCCTCATTTCGTATCTGTTTCCGTAAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	TTGCACCATCAATTGTTTGTGATGTTGTTGTGGC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	AAAAGACGACTGGGAACACAAGCGGACACAGTACG
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	ATGAATCAACAATGATCCGGCGCCATTGAGTATTAA
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT	CCTATTCTTCAATTTTTACGATGTCTTCCAAGCC
GTTTCAATCCCTGATAGGGATTTTGATGAATTGCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012409218.1\|3318846_3322581_+\|magnesium-chelatase-subunit-H	unknown	unknown	gnl\|CDD\|215643
NC_010628.1\|WP_012409222.1\|3342858_3343146_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_010628.1\|WP_041565391.1\|3326167_3327322_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227922
NC_010628.1\|WP_012409228.1\|3348768_3349527_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|274458
NC_010628.1\|WP_012409216.1\|3315810_3316788_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187664
NC_010628.1\|WP_012409224.1\|3344339_3344933_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_010628.1\|WP_012409223.1\|3343185_3344190_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|274976
NC_010628.1\|WP_012409214.1\|3306421_3312025_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NC_010628.1\|WP_012409219.1\|3324861_3325308_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_052304595.1\|3327330_3330129_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NC_010628.1\|WP_012409230.1\|3350575_3353317_-\|hypothetical-protein	cas10d	mkCas0201_cas10d_CAS-I-D	gnl\|CDD\|274469
NC_010628.1\|WP_012409225.1\|3344964_3345810_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG5551_cas6_CAS-III	gnl\|CDD\|227838
NC_010628.1\|WP_012409220.1\|3331544_3338141_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236848
NC_010628.1\|WP_012409226.1\|3345799_3346420_-\|2OG-Fe(II)-oxygenase	2OG_CAS	-	gnl\|CDD\|379309
NC_010628.1\|WP_012409215.1\|3312485_3314822_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NC_010628.1\|WP_063721249.1\|3325743_3326205_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227922
NC_010628.1\|WP_012409229.1\|3349529_3350558_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NC_010628.1\|WP_012409227.1\|3346496_3348776_-\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|187841
NC_010628.1\|WP_012409221.1\|3341371_3342682_+\|IS701-like-element-ISNpu5-family-transposase	unknown	unknown	gnl\|CDD\|227946
NC_010628.1\|WP_012409217.1\|3317052_3317994_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012409218.1\|3318846_3322581_+\|magnesium-chelatase-subunit-H	gnl\|CDD\|215643	PLN03241, PLN03241, magnesium chelatase subunit H; Provisional.	0
NC_010628.1\|WP_012409222.1\|3342858_3343146_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.09818e-35
NC_010628.1\|WP_041565391.1\|3326167_3327322_+\|hypothetical-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	1.40135e-22
NC_010628.1\|WP_012409228.1\|3348768_3349527_-\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|274458	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	2.20648e-91
NC_010628.1\|WP_012409216.1\|3315810_3316788_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187664	cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs. This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	6.45509e-110
NC_010628.1\|WP_012409224.1\|3344339_3344933_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.54677e-58
NC_010628.1\|WP_012409223.1\|3343185_3344190_-\|type-I-D-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274976	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes a clade of Cas1 limited to the CYANO subtype of CRISPR/Cas system and most often the type found there.	2.03269e-156
NC_010628.1\|WP_012409214.1\|3306421_3312025_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NC_010628.1\|WP_052304595.1\|3327330_3330129_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	5.49021e-45
NC_010628.1\|WP_012409230.1\|3350575_3353317_-\|hypothetical-protein	gnl\|CDD\|274469	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc3 for CRISPR/Cas Subtype Cyano protein 3, as it is often the third gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	2.2066e-08
NC_010628.1\|WP_012409225.1\|3344964_3345810_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.01764e-63
NC_010628.1\|WP_012409220.1\|3331544_3338141_+\|HAMP-domain-containing-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	3.63216e-73
NC_010628.1\|WP_012409226.1\|3345799_3346420_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	3.4702e-09
NC_010628.1\|WP_012409215.1\|3312485_3314822_-\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	8.45387e-93
NC_010628.1\|WP_063721249.1\|3325743_3326205_+\|hypothetical-protein	gnl\|CDD\|227922	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms].	1.3278e-11
NC_010628.1\|WP_012409229.1\|3349529_3350558_-\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	3.19237e-166
NC_010628.1\|WP_012409227.1\|3346496_3348776_-\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	4.35629e-148
NC_010628.1\|WP_012409221.1\|3341371_3342682_+\|IS701-like-element-ISNpu5-family-transposase	gnl\|CDD\|227946	COG5659, COG5659, FOG: Transposase [DNA replication, recombination, and repair].	3.01338e-84
NC_010628.1\|WP_012409217.1\|3317052_3317994_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	1.21389e-48

>NC_010628.1|WP_012409220.1|3331544_3338141_+|HAMP-domain-containing-protein
MATEQLTRDSDNLDLNQLLRTLNAVKQGDFSARMPIDHTGVAGKIADTLNDIIDQNERMAAELQRIGNVVGKEGKIAERASLGDVRGSWSNCVTSVNTLITDLVQPTAETTRVIRSVANGDLSQTIATEIDGRPLQGEFLQTANIVNTMVDRLGSFASEVTRVAREVGTEGKLGVQAEVQGVAGTWKDLTDNVNLMAGNLTGQVRNIAEVATAIANGDLSKKITVNVKGEILELKNTVNTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVKGVAGTWKDLTDNVNLMAGNLTAQVRNIAEVTTAVANGDLSKKITVDVKGEILELKNTVNIMVDQLNSFASEVTRVAREVGAEGKLGGQAEVRGVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAVANGDLSKKITVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVRGVAGTWKDLTDNVNLMAGNLTGQVRNIAEVATAIANGDLSKKITVDVRGEIFELKNTINIMVDQLSSFASEVTRVAREVGSEGKLGVQADVRGVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAVATGDLSKKITVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGSEGKLGVQAEVRGVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAVATGDLSKKITVDVKGEILELKNTINTMVDQLSSFASEVTRVAREVGTEGKLGVQAEVKDVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAIANGDLSKKITVAVKGEILELKNTINIMVDQLNSFASEVTRVAREVGSEGKLGVQADVRGVAGTWKDLTDSVNFMAGSLTAQVRNIAAVTTAVANGDLSKKISVDVKGEILELKNTVNTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVKGVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAVANGDLSKKITVDVKGEIQELKNTINTMVDQLNSFASEVTRVAREVGTEGKLGVQAYVRGVAGTWKDLTDNVNSMAGNLTGQVRNIAEVTKAVANGDLSKKITVDAKGEILDLKNTTNTMVDQLSSFASEVTRVAREVGTEGKLGGQAQVQGVAGTWKDLTDNVNSMAGNLTAQVRGIARVVTAVANGDLKRKLMLDAKGEIETLAETINEMIDTLATFANQVTTVAREVGIEGKLGGQARVPGAAGTWKDLTDNVNELAATLTTQLRAIAEVATAVTKGDLTRSIAVEALGEVAILKDNINQMIANLRETTQKNTEQDWLKTNLAKFTRMLQGQRDLETVSKLILSELAPLVGAQHGVFFLMESGENTPFLKLISSYAYRERRHLANRFHLGEGLVGQCALEKERILLTDVPSDYVRIASGLGEASPLNAVVLPVLFEGQVTAVIELASFRRFSEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQSQSLAEELQTQQNELRETNKRLEQQAQSLKTSEDLLKGQQEELQQTNAELEEKAELLAMQKKEVERKNREIEQARMSLEDKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADNIDNNLTTKQVEYSQTIYSAGTDLLALINDILDLAKIESGTMSIDMTQMPLVELGEQIERTFRQVAQSKGLAFTIEFTPDLPTTIYTDIKRLQQVLKNLLSNAFKFTEQGEVRLQIAVAKQGWSNDQVTLNRAQNVIAFSVSDTGIGIAPDKQKVIFEAFQQADGSTSRRYGGTGLGLSISREIARLFGGEIKLTSQPGQGSTFTFFFPQLNVEPTSTQLPTPYSLLPTLHSSISTQNSALLSDDRATISMGDRVLLIVEDDVNFARILIDMAQQHGFKVITAQNGSTGLALAQQFYPSAVLLDIRMPEMDGWTVLDRLKHDPNTRHIPVHIMTVEEGQQRSLQLGAIAYLQKPLSSEIISEALVKIKGFVERQVKNLLVVEDDDTQRHSIVELIGNSDVHTTAVATGAEALEAIRTKHFDCLVLDLGLPDMTGFELIEQIKLLPHGKTLPIIVYTGRDISKAQETELRRIAETIIIKDVRSPERLLDETALFLHRVQANLPAPKRQILEQLHSIDYLLAGKKALIVDDDVRNIFALTSMLERYQIQVLYAENGREGINVLENTPDIDVVLMDVMMPEMDGYETTSLIRQNEQFKSLPIIALTAKAMQGDREKCIEAGASDYITKPVDTEQLLSLLRVWLYR
>NC_010628.1|WP_052304595.1|3327330_3330129_+|HEAT-repeat-domain-containing-protein
MQHEYSDVRRRAVYALGEIGNEAAVSALIGALQHEYSDVRCSAADALGKIGNEAAVSALIGALQDEDFDVRRRAADALGKIGNEAAVSALIGALQHEYSDVRRRAVYALGEIGNEAAVSALIGALQHEYSDVRRRAVYALGEIGNEAAVSALIGALQHEYSDVRCSAADALGKIGNEAAVSALIGALQDEDFDVRGRAADALGKIGNEAAVSALIDALQDEDFDVRGRAADALGKIGNEAAVSALIGALQHEYSDVRCSAADALGEIGNEAAVSALIGALQHEYSDVRRRAVYALGEIGNEAAVSALIGALQHEYSDVRRRAVYALGEIGNEAAVSALIGALQHEYSDVRCSAADALGKIGNEAAVSALIGALQDEDFDVRGRAADALGKIGNEAAVSALIDALQDEDFDVRGRAADALGKIGNEAAVSALIGALQHEYSDVRCSAADALGEIGNEAAVSALIGALQHEYSDVRRRAVYALGEIGNEAAVSALIGALQHEYSDVRRRAVYALGEIGNEAAVSALIDALQDEDSDVRCSAADALGKIGNEAAVSALIDALQDEDFDVRGRAADALGKIGNEAAVSALIDALQDEDFDVRGRAADALGKIGNEAAVSALIGALQDEDFDVRRRAVYALGEIGNEAAVSALIGALQHEYSDVRCSAADALGKIGNEAAVSALIGALQDEDFDVRGRAADALGKIGNEAAVSALIYALQDEDSDVRCSAADALVKIADSEVLCQIWELQLKTPSQDKSDAISKIQERCKFYNHEIFYSVLNEETNNADPLTSVLSKLDKTLITMSETPKNDFTGATFGPITGSVTGNIQGDNIGTQNNYASTEDIAKLETVLEQLLEKMEQDKPTVIDAQPIVAQAVESHPVLKNRQAIEQVIKNNPMLKVRLQRAVTAAGIETVKILFAPAGIAIEAIRAWNEPS
>NC_010628.1|WP_041565391.1|3326167_3327322_+|hypothetical-protein
MLDLIRDFLTRHNLNLSTEEIENLLFKERFLLLVDGLNELPNDEARRDLDGFRHKYHRITPMIFTTRYLRVGGDLGIEKKLEMQPLTEAQMQHFVRAYSPEVGDKMLRQLAGRLRELAETPLLLSMLCQVFNYAKQIPTSLGELFRWFSGEYHKLKENVPIAEELPNWQADLLQHLAFVMMQGDNLTELRLTISKLQARNVLAKFLRNEEVPSANDRARRWLDDLLKYHLIQLRTDNEIEFRHQLIQEYYAAESILLQLDNISDEKLKRDYLNCLKWTEPVALMLGLVNDEGQALRVVKLALDVDLKLGARLAGEVKQEYQKKTVNLILELDIHKLLQVEFLGITHSEDAVSFLNNSLQHEYSDVRKRAADALGKSAMKRRYLP
>NC_010628.1|WP_063721249.1|3325743_3326205_+|hypothetical-protein
MVADPSIDFHRYLESVSEDETYRYWQDLYTPTNALDRQRLEPKNSRRRLDLSLMVQTVPQQRKGEAPDREKIERLNILEGLRKYAPDHVLLVGKPGSGKSTALERLLWEEAEKRRGAWEQRRSGKADKDSRASRVKALQNFGARFNSRLFDSP
>NC_010628.1|WP_012409219.1|3324861_3325308_+|hypothetical-protein
MARRKRNSSVLERADRRIESLQSISVQLDFGQGLTIQAYTVTINDLRSKLAAYNTALSTIDKLTDDVNNAEKAVIAMSEKMLLAVGSRYGKTSPEYEMAGGARRGTTKKKQSVLGNSKPSNSLAADSVKVSSANGFMNGVSGAGAIGS
>NC_010628.1|WP_012409218.1|3318846_3322581_+|magnesium-chelatase-subunit-H
MKRIVLVAGFESFNADLYRKAAFLANSRCPELDIRVFSDRNITSQRAEVEAALDGADAFFGSLLFDYDQVVWLRDRIAQIPIRLVFESALELMSLTKLGDFAIGDKPKGMPKPVKFILDKFSKGREEDKLAGYISFLKIGPKLLKYVPVQKVQDLRNWLIIYGYWNAGGPENVASLFWTLAEKYLNLKVGDIPPLIETPNIGLLHPDYQGFFESPREYLEWYKTHCRDAIHRVSTKPIIGILLYRKHVITKLPYIPQLIRSFEKAGLTPLPIFINGVEGHVAVRDLMTTDYEIQQRQLGNIETPSLSSEAVKVDAIVSTIGFPLVGGPAGSMEAGRQIEVAKRILTAKNVPYIVAAPLLIQDIHSWTRQGVGGLQSVVLYALPELDGAIDTIPLGGLVGENIYLVPERVQRLIDRVKSWVSLRQKPASERKIAIILYGFPPGYGAVGTAALLNVPRSLLKFLHALKEQGYTVGDLPEDGEELICWVKEADESNPLVGQSSRLPLDNGGQDAHPTSTVNARTLEKWLGYLQTSRIEKQWKSLTGTGIKTYGDEFQIGGVQLGNVWIGVQPPLGIQGDPMRLMFERDLTPHPQYAAYYKWLQNEFEADAIVHFGMHGTVEWLPGSPLGNTGYSWSDILLGNLPNLYIYAANNPSESMLAKRRGYGVLISHNVPPYGRAGLYKELVALRDLISEYREDPQKNYVLKEGICKKIVDSGLDADCPFENAKKLGIAFTPENVRMFSGHAFDAYLVELYEYLQVLENRLFSSGLHTLGEKPSEEELGSYLEAYFGDEEEGNEPQRRGEHREKREEEERLLRDLLMQSTDELTNLLRGLNGEYIPPAPGGDLLRDGAGVLPTGRNIHALDPYRMPSPAAYERGREIAQKIIAQHLDEHGKYPETVAVMLWGLDAIKTKGESLGILLELLGAEPVKEGTGRVVRYELKPLAEVGHPRIDVLGNLSGIFRDSFVNIIELLDDLFQRAADADEPEDRNFIRRHALALKAQGVENASARLFSNPAGDFGSLVNDKVVDGNWESGEELGNTWQSRNVFSYGREDKGQARPEVLNTLLKTSDRIVQEIDSVEYGLTDIQEYYANTGGLKKAAEKQGGKKVTTSFVESFSKDTTPRNLDDLLRMEYRTKLVNPKWAQAMANQGSGGAFEISQRMTALIGWGGTADFADDWVYDQAADTYALDAEMAEKLRKANPEAFRNILGRMLEAHGRGFWEADGEKLDKLRQLYELTDEELEGVTV
>NC_010628.1|WP_012409217.1|3317052_3317994_-|N-acetylmuramoyl-L-alanine-amidase
MKFGIDSGHNCPPDTGASGIKFEDNLTLDVGNRVIAKLRALGNEVVVCRPSSARTVTESLSKRCSTANGSKVDIYVSIHFNCFNGQANGTEVFATSDTGRKIAKPVLDEIVKLGFFNRGVKSGSHLYVLKNTDMPAILVECCFIDSQKDVNLFNPEAMANAIVKGLTGKVPSTPVNPVPDEEENVDATILRLQKSLNRLKITDKNGNALVEDGFTGANTKSAVEKFQAIIGVQTTGIADSTTWNAINLILAKRIIRPNHAGGAVVRYLQYRLGVENDGVYGPQTEVVVKNFQKQNGLDADGIVGPASWQKLIG
>NC_010628.1|WP_012409216.1|3315810_3316788_-|SDR-family-NAD(P)-dependent-oxidoreductase
MKHLEDRVALVTGATRGIGRGIAIGLAEAGATVYVTGRSLNNSSSDAVSGSLSETQSTIEEAGGVCIPVQVDHSDDEQVRLLFERIQDEQDGQLDLLVNNAYSGVEAIRNAFGQPFWDCEPNLWDASNNVGLRSHYVASVFAARMMTKRKSGLICTISSWGSMFHIFNTAYGVGKAACDRLAADMAVELKPHNVASVSIWPGIVGTELFSRFASEMNQTNATEPKNSLISDRYNWETPLLTGRVIAALACEPNLMLRTGRVQIVAELADKYGIVDENGDRPASLRSLRFVLPTALPILRNYSWLIPDIKMPWSLLLLSALSSPKI
>NC_010628.1|WP_012409215.1|3312485_3314822_-|cation:proton-antiporter
MQEDFRLIVDLVLVLGVAACGGLLAALLRQPVLLGYLIGGMIVGPAGLGLIKEVIQVETLAQFGVAFLLFALGVEFSFAELKKVKAIALGGGGLQIALTILVTVVVSGLSGAWGTLPAKGMFLGCILSLSSTAVVLKCLMERNETETPHGQVMLGILVVQDLALGLMLAVLPALNQPAETIGIAVLTALLWIALFAAGAVAAGMWLIPPLLRLLARTESRELFLLGVVALCLGIALLTEHLGLSIEMGAFVAGLMISEVEYADQTLTYVEPLRDIFASLFFAAIGMLIDPVFLWNNLELILGLVALVFIGKFLIITPLVKLFRYPLKTAIIAGLGLAQIGEFSFVLASEGQSLGLVSRQIYLLILGTTAVTLMLTPFVLRLVPFLFNFAESMPWLKPYLEEQEALDVSEDLPFKDHVVVCGYGRVGKNLVKLLLQHNLPVVVIDQSESRIQQLREAGVSYVYGNCVSLHVLETAGVNHAKGMAIALPDPMSTRLCLKRALELRPELDLVVRATQDKNIEVLYQLGAREVVQPEFEASLEMATYLLTGLGLLSSAVVQREMQQIRNDHYLDLRPERSATEVARDLRQATRDLNQRWYPLPADSPLIGMSIEEADMRYLTGASLMAIRRANGDEIDYPNNQTKLEDGDRLLVVGADEELAALAEFAKGQAAVPGENSACQWVTVNADTPTLGKTLADLDINKQFGVQVQAIRRDGKFIRYPDGGMDLRVGDQVLLCGSLTGLSQIEQLFAIASSLPLSLPVLKAVQAEALKEFLPADSVD
>NC_010628.1|WP_012409214.1|3306421_3312025_+|AAA-family-ATPase
MVENRVDVPGYGIGERIYTSTRTLVYRGWREADQTPVVIKLLKNSYPSVIELAQFRNQYSITKILNVPGVVRIYSLENCQNRPALILEDFGGISLKEYTAFRRKGLGEIGNQENSSSLHPDFLTEFLQIAIALADILADLYHHEIIHKDIKPANILINPTTKQVKLIDFSIASLLPRVNQLSTSPTVLEGTLAYLSPEQTGRMNRGIDYRTDFYSLGVTFYELLTGQLPFQSDDLMELVHCHIAKQPPLLNDRGEIPQILCDIVMKLMAKNAEDRYQSALGLKHDLQICLDQLQSSGNITPFRLGRRDVCDRFAIPEKLYGRETEVAMLLATFERLRQGTSEMILVAGSSGIGKTAIVNEVHKPITRQRGYFIKGKFDQFNRNIPFFALVQAFRDLMAQLLTESDAQIDQWKTQILSTLGESGQVIIEVIPELERIIGKQPSLPELSGSAVQSRFNLLFQKFIQVFTTQEHPLVIFLDDLQWADSASLKLMHLLMSEASNSYLLVIGAYRDNEVFSAHPLMLTIEEMRQEAITVSNILLSALTETDLNQLIADTLKYSTEQATAIANLVYQRTKGNPFFTNQFLKSLHEDGLIAFASRTGDWQCNLVKIRALSFTEDIVEFVALQLHKLPPQTQDVLKLAACIGNQFDLETISVVYQKSPVQTAADLWPALKDELILPSGEGYTFFQDESVVMDDLTNDNTPIIITYKFFHDRIQQAAYSLIPDYQKPATHLKIGQLLLSNTPETEQELLIFEIVNQLNIGIELIASQTDRERLAQLNLLAGKKAKSSTAYQVAIEYLTTGIRLLRSDCWQSQYELTLALHESAADAAYLSGAYEQMEKLTQTVIQQAKTPLDQVGIYETKIQAYTAKNDVLGAIAIARQGMSKFGVVFPETPTPQDIQQALQETANLINGRDIAELVDLPVMVAAEKLAVTRIVANVAPAVYIADPNLFPLLVLSQVQASIEYGNAPFSAFCYGCYGILLSGILQDIETADRVGNLALALTDKFNISDIKPTVFYVVGAFITYLKSPLQKSLQLMLDGYKIALETGNVYYVGFNTKDICQYSYFLGRELNSLEEDIQAYCHVLENFKQGTTLNYCRIFWQTVLNLLGKAENPCIITGEALNEAEFVNQLVQANELTGLHYFFLHKLILCYLFENLSQAVETAAQAREYLVAGTGYATVPMFYFYDSLTALAEYRTATAYRRETLLERVTENQEKMQTWAYHAPMNYLHKFELVKAEECRVLGQMAQAVDHYDRAIAQAKANKYIQEEALANELAARFYLEWNKEAIAQIYLENAYYTYLSWGAIAKVNQLERQYSQLLLKVFQQDETTSSTLTTTIGFNQSSSTGTEALDLATVMKASHALAGEIELEKLLTTLMQVVIENAGADKSVLLLLQEDNWVVVAQKTSQAIFEEEQFLPHPTPTDENLGIINLHSLPLSASQDVPKAVVNYVSRTTETLVLDDARKETTFANDPYIILWQPKSLLCTPIHNRGQLIGILYLENSLTTGAFTQNRLEVLRLLTAQAAISLQNAMLYNNLAVAKAQLEDYNHTLEQKVEQRTLELNDKNQHLSETLEELQHTQSQLIQTEKMSSLGQMVAGVAHEINNPINFIYGNLTYTNEYCQDLLHLVERYQHYYPQPFVEIQEELEAIDLNFLKSDLQKLLQSMKVGADRIRQIVLSLRNFSRLDEAEMKSVNLHEGIDSTLLILHHRLEEKAHRPGIDVIKEYAQLPEVSCYASQINQVFMNILNNAIDALDSSFTTEERQTKIPTIQIRTKMTDADTVTIQIADNGPGMCDEVKQRLFDPFFTTKPIGTGTGLGLSISHSIVEKHGGRLSVISESGKGAEFSLSIPLHNTVEQGAGGKGNGKRAN
>NC_010628.1|WP_012409221.1|3341371_3342682_+|IS701-like-element-ISNpu5-family-transposase
MVEPRSPIKTVKFVDEYCLWYKNLFSDVRNFEAFKYLHIGCISDLKRKSLPEIAKIVGLDNYQGLHHFLTTPSWSVEQLRALRLQLILEVLKGRPIILIIDETGDKKKGNTTDYVKRQYIGNLGKVENGVVAVTAYGMFCGMTFPLLFEVYKPREKLKPGDKYLTKPQIGAMLIRKLQLMGFKFNLVLADSLYGESSTNFIPVLDELDLNYLVAIRSNHSVALLKGQYTQYLNWHKFKRVFSDLSSENRFIREIIHGKRSNHRYWQITTDTLNLPGNSTWYVMSKYPDITPREVGNFYGFRTWVEYGLKQSKNQLGWADYRFTCYEDIERWWEIICSAYLMVSLHSESLRPYPLDSQSTFASHQRWDNGKGWKNILNNLRLILQPFTLFNLIQPWLSVFPIPHLSLGFAKLQSVVYYLTYPTFISLTDPDFYFSSA
>NC_010628.1|WP_012409222.1|3342858_3343146_-|CRISPR-associated-endonuclease-Cas2
MYIVVSYDIPEDKRRTKIHSILKSYGQWMQLSVFECDVTPTQYAKLRSRLAKLIKPDTDSVRFYFLCGCCQRKIERIGGEQPRDETIFFAESPSG
>NC_010628.1|WP_012409223.1|3343185_3344190_-|type-I-D-CRISPR-associated-endonuclease-Cas1
MGTLYVTQADAFIGKVDERLTVKSEQKTIMDIPLIKLEGIVVLGRATISPAVVSELLERHICLTFLTQNGRYLGRLEPEVTKNIFVRKAQWQAVGESQPAIHLVRGFVRGKLKNYRHSLLRTQREHPDTDLNNNITRLENAIAPIEKTSSIDSLRGLEGAGSAAYFGCFQQLIKTPEFRFEARRRRPPTDPVNALLSFGYSLLRHDVQSALNIVGFDPYLGYLHVERYGRPSLALDLMEEFRPLIVDAVVLSLINKRSLTLTDFTTEPLSGAVSLTKEGLHTFLRAYQQKKLSEFKHPVMGNKCTYQESFEIQARLLAKYLMNEIDKYPPLVLK
>NC_010628.1|WP_012409224.1|3344339_3344933_-|CRISPR-associated-protein-Cas4
MNQTEYISIAALNQYAYCPHRCWRMFCAGEFTDNQYTIEGTTLHDRVHTTSDIQRGETWQVRAIWLKSEQYKLIGKSDLIEAESGQVYPVEYKRGRKGEWDNDELQVCAQALCLEEMTGEPVTTGYIYYAHSHQRQLVEINQELRNSAIATIESVTNLLETGAMPKPVYSKRCQGCSLYSQCLPKATDKVKSYQEVN
>NC_010628.1|WP_012409225.1|3344964_3345810_-|CRISPR-associated-endoribonuclease-Cas6
MPHSLVLNLLPQSPIPPQYLTGRHLHALFLTLVSSVDSTLGDRLHDSTADKAFTLSPLQISNTNSPLLKGGKGGSKLQYSHQQPIPAGTPCWWRISLLDDTLFGKLTQLWLNLNPNRPWHLGPADLYITSIQGTPQSIQPWANANTYAQLYEEASDGNSSINLTFSTPTAFRQGQYDTTLPTRESVFNSLLSRWNKYSGIEFSQIAIESIFPSFVNIHTEILADSRSKFIGIIGEVTYKILGAVEPIQIKQINALADFALYTGVGRKTTMGMGMTRQMYSP
>NC_010628.1|WP_012409226.1|3345799_3346420_-|2OG-Fe(II)-oxygenase
MKHYQQQTNAFPSDYLNNLWGEIQACPYFAINNLNRDFVATKGFSVVFQRSGLAKVEQQFPYFKLYLDLALQPNCNAFYLNPLQLKEGSRVDPHIDRSLRSYSKTIEPPAVVSVLYVRVPADMEGGELVLRSHKRQLGQIKPQFNTLVYFQGDLTHSVNAVKTPGNRLSLVCEQYSLSDAELQEIPEFTVESRSTQSTTKKRKYAS
>NC_010628.1|WP_012409227.1|3346496_3348776_-|type-I-D-CRISPR-associated-helicase-Cas3'
MSNQNLVIRLEPRSISACASPDKISFIKNALQHQLDVFEQSKDADIILDLAPTGTGKTKAGLAVLKHQPNNSAVYIAPTNALIEQQTEAAKQFVRDANLPHVVKSASAKDIKSWPDDKVGRRSGEKLYNVLRNPATVFDDVGANTPILLVTNPYIFYYATFFAYNNLDRGNIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFYLAYSHIFRFFENGRKVVLLTATPEPACELALQNLKQAGVKIAIIDGESGNTNLLPSQTAVNLELRPKPDSKEEWLAELAAEVIQRFLEKPDENGAVILDSLDNINRLSDLLRQQGLSNYIGRITGPAPKQDRQRAMQCQIILATSTVDVGFNFERHPEPKRQNLDWLIFSARDRAAFWQRIGRVGRVLGKSETNIDSEAIAYLPANTWNEGLTSLDTIEGRTALKDLLETLPSLNKPFLKAYWRSEAFLEIARPLLELEEMLEGLAEEKLILELFNTLKSIFEGNRTWDDYRYRMKLLRGAETIAKKTPKEIKKDWKYIKGGQAFVRTFIKAKFPEDWDDLQAGRTTLDEYVDLFQKDEDVLAELKEFAEVFSTSYAPLFSFRSSLFESLSIRDPHGFIIDESEETKLDPFHLLRYYEFVQNGDYIEVTSRATETYQLSFRLRYTDNWQEFISTELNKLTAFKNCQIIRTAGGAIRPTPLIQALNKHLLPGVIICPRTNAAVIFQLNKQGIISYPITIVCNDMEKEYRFFTGLSGILTMAMKFKQLRLPDDEVFIAG
>NC_010628.1|WP_012409228.1|3348768_3349527_-|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MSTIPFQQAKLVELYCLEPVFFASRELSDTYYTEGVIGNYALTYALGRVNSPYRLQGQATGRPTYKEDFQPIAQDFYILPASPVGRVTFRFERFNALSDAYWYAMTNNRVATAREDLPLQRQGKKPSSFRPSNFPQTGRLRMIERRNKFQTLVFGNHQLPTYIRLGKFMSKVQVNVLNEFPVTLLPEGEYQSQHYLNAADLPQQIEALAFDLISIPPAPIIKNLHFRGAAWQIGEMIVPAGLHFCGRESSNE
>NC_010628.1|WP_012409229.1|3349529_3350558_-|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MSISKLSTVLAASYENFPKGRFITLVVLRTTHSETIFRTEGSGEPMCSEFVQAGLEGENQKTIIQRLVMTKRKQVAPERRYGREHLRAHELLYTNIKDGSLCSLNTNAPCEMCVDCFLYGFAAGGGGAQKSRIWTEDAFSILPASDVVGDRTINAIYENGTMRDEKGNASTALNTSEYIKPGVHFLDVVTLKDVTADELRYIIGNILFTSRYGAVSSRVGRMENEILGVFGSITELPSSLELVQATYDVLGKPLEHPLNINQLITASKQVIANWKNKRGVSVQLSEEELANLLTDVETNWSEAERDNFLKRLTQSYEPFRHVATEKKKAKAKGKNTPVEVES
>NC_010628.1|WP_012409230.1|3350575_3353317_-|hypothetical-protein
MIKRSRLLNAPPKTLEEIYFSEIRPQLYENHAHRHQTGVRTGTTLAEHLDSACQFILTVSRIAEVPEDKRPLLLAATAVHDLNKLDTQKRNVKTLARNQEFLREQLEKACVLTFVVSEDDLELVRKLIERHSGHNISDGSRFLPEDPNIERWAAMLTAADLFDLGIPDAQRFRKLEKELTVAFGRSCNLFRISISEDKGYITALLLGACEEVLQKYGLNPLAIFPDGELFEGEALANIDFTKEIAAVWQSKIDQVFGNNIERLVRATKDGIKVSHQAIQQNIEEVLVNVEALLERKKAGYKSDKIAKDVTKWGEAAGADALIKAAELQLLPVSNAEEFAISEGLKAAYLSYREAGLTPKEVWDKIAHHTGISELQRTAIEPFNGQYGRPLFAAKAAVKGIEGIKEALQESFQLRKESTQISEETEVSEEMIAAVSRMVNLPFAIRLNGGNDLNAYVEANPRQRCSLGSTSTDIDELISDNMPPGTKVQAFSNRLPGGISAEPKRQADSIAALAYQLMAVGANFPAVKKQDPLYLHLALPKGSAPELLRIWRELLKQLAATNAEGGTVTVDELKLYKDNQLEFKANKVVGLALPKRPDFVHTSVIIPLLWGDVNNSLALLKSLRLALEISLSLDIGFPFTLSGNLEVEISTHTVDDRIFGRVEGIPSALIRLLGSGQYKRFKKEEIKENRETLSAERIIERLQCISKLATSVASIQKADDCLYDLARACVRPIELYYVLLRWTLREQDEPNLSVIWSRICEPLNTLLESFMPDENLLLTKYLREAAQVAAEGKIWGSSFKRTAQAEPFTAFIAAIRSQKSYLGLDVIFAALVQQYHTRLDRIREHGVGATKYEQVKRYYELLRKLYEEVYSARPEKFLSDQKTLEAAYLFFLEEARKQLKSQSENDSVETTATV

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Crispr_ID: NC_010628_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_17

3441037-3441137

TypeII

A:N

Consensus_repeat	Method
CCCGACAGGATTTGAACCTGCAAAA	CRISPRCasFinder

1 spacers

Cas9_archaeal

The CRISPR arrays of NC_010628_17

>merge|NC_010628|17|3441037-3441137|CRISPRCasFinder
CCCACCAGGACTCGAACCTGGAATCTTCGCCTTCAAAGGGCGCTATGTTGCCAATTACACCACAGGGCTTTATTGCCAGGGCAGGGTTTGAACCTGCAACC

>NC_010628|17|17|3441037-3441137|CRISPRCasFinder
CCCACCAGGACTCGAACCTGGAATC	TTCGCCTTCAAAGGGCGCTATGTTGCCAATTACACCACAGGGCTTTATTGC
CAGGGCAGGGTTTGAACCTGCAACC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_148220315.1\|3429376_3429922_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409303.1\|3442809_3443655_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NC_010628.1\|WP_012409298.1\|3433211_3434057_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409307.1\|3445056_3445392_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041566144.1\|3446280_3448302_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_010628.1\|WP_012409310.1\|3449399_3451319_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NC_010628.1\|WP_041565401.1\|3430009_3430201_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409304.1\|3443686_3444076_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409295.1\|3430216_3430417_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409302.1\|3438596_3439685_+\|glycoside-hydrolase-family-3-protein	unknown	unknown	gnl\|CDD\|224389
NC_010628.1\|WP_086000624.1\|3444092_3444599_-\|HNH-endonuclease	Cas9_archaeal	cas9_archaeal	gnl\|CDD\|224321
NC_010628.1\|WP_012409301.1\|3436796_3438236_-\|15-cis-phytoene-desaturase	unknown	unknown	gnl\|CDD\|131778
NC_010628.1\|WP_012409300.1\|3435880_3436813_-\|phytoene-synthase	unknown	unknown	gnl\|CDD\|215339
NC_010628.1\|WP_012406904.1\|3451470_3452364_+\|transposase-family-protein	unknown	unknown	gnl\|CDD\|372577
NC_010628.1\|WP_052304597.1\|3442419_3442614_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409309.1\|3448310_3448919_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176875
NC_010628.1\|WP_012409297.1\|3432456_3432774_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409296.1\|3430499_3432227_-\|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|180319
NC_010628.1\|WP_012409299.1\|3434120_3435443_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380569
NC_010628.1\|WP_012409306.1\|3444733_3444985_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012409302.1\|3438596_3439685_+\|glycoside-hydrolase-family-3-protein	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	1.78053e-80
NC_010628.1\|WP_086000624.1\|3444092_3444599_-\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	1.97182e-26
NC_010628.1\|WP_012409303.1\|3442809_3443655_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	3.58927e-73
NC_010628.1\|WP_012409301.1\|3436796_3438236_-\|15-cis-phytoene-desaturase	gnl\|CDD\|131778	TIGR02731, Phytoene_dehydrogenase_chloroplastic/chromoplastic, phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NC_010628.1\|WP_012406904.1\|3451470_3452364_+\|transposase-family-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.34968e-24
NC_010628.1\|WP_041566144.1\|3446280_3448302_+\|GAF-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.71119e-34
NC_010628.1\|WP_012409309.1\|3448310_3448919_+\|SRPBCC-family-protein	gnl\|CDD\|176875	cd08866, SRPBCC_11, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	2.71431e-64
NC_010628.1\|WP_012409310.1\|3449399_3451319_+\|cation:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.58019e-74
NC_010628.1\|WP_012409296.1\|3430499_3432227_-\|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit	gnl\|CDD\|180319	PRK05945, sdhA, succinate dehydrogenase/fumarate reductase flavoprotein subunit.	0
NC_010628.1\|WP_012409299.1\|3434120_3435443_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380569	cd06346, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.	3.1989e-111
NC_010628.1\|WP_012409300.1\|3435880_3436813_-\|phytoene-synthase	gnl\|CDD\|215339	PLN02632, PLN02632, phytoene synthase.	1.0611e-154

>NC_010628.1|WP_012409302.1|3438596_3439685_+|glycoside-hydrolase-family-3-protein
MSGSQELKRFGHHLILGISGATLSDDDKRALSELKPIGVIFFAKNFLDGTPYQVWLESFKDLNNQIREYAERDSMFMTLDHEGGRVIRTPLPITRFTHALLLRSHAQEVAKATATELKSLGINLSWAPIADVFSHPHNPVIGPRAFGNTPEIAAKDARDYYLGLQESGILGCAKHFPGHGDTSKDSHIELPILDLTLEDLRLRELIPFKALIEVQIPLIMTAHILFPKIDADLPATLSQPILNSILRKELGFQGVVVSDDLDMKAISDMFMKAGTVARSFHAGCDLFIVSRNINSSSIERTYQIAEDFVDSLSNGSLDESVVEAARERIEKLLAVTPQYPVEILDRDILLQHAKLAIASSYS
>NC_010628.1|WP_012409301.1|3436796_3438236_-|15-cis-phytoene-desaturase
MRVAIAGAGLAGLSCAKYLTDAGHTPIVLESRDVLGGLVAAWKDSDGDWYETGLHAFFGAYPNMLQLLKELGIEDRLQWKEHTLIFNQPDKPGTLSRFDVPDIPSPFNVIASILRNKDMLTWEQKIRFAVGLLPAVVRGQKYVEEMDKYSFLEWLKRRGVDERVTSDVFIAACKALTFINPDEVSATILLTALNRFLQERYGSKIAFLDGSPTERLCNPIVDYITERGGEVRLNAPLKEILLNADGTVKGYLIRGLNGAEDEVITADSYVSAISVDPLKVMLPKPWKLMEFFQKLEGLEGVPVINLHLWFDRKLTEIDHLLFSRSPLLSVYADMSNTCREYANPNRSMLELVLAPAKDWIAKSDEEIVAATLAELEKLFPDHFGGDNPATLLKSHVVKTPRSVYKATPGRQQYRPAQVTPIANFYLAGSYTMQRYLGSMEGAVLSGKLTAQAISEALPVANSSNLQTLTRPPATNAATA
>NC_010628.1|WP_012409300.1|3435880_3436813_-|phytoene-synthase
MLQLPDSPPRMKTLVSVDESYKLCRHLTAKYAKTFYLGTLLMSPVKRQSIWSIYAWCRRTDELVDGPASAITTPETLDLWEQQLESIFAGRPLENYDVALVDTLQRFPMDIQPFRDMIAGQRMDLYRSRYETFEDLYLYCYRVAGTVGLMSTEVMGVDSTLYTAPWHQNKQPYLPTEEAIALGIANQLTNILRDVGEDAKRGRIYIPLEDLEKFNYTEQDFFKGVVDDRWRALMRFQIERARQFYTTSNQGITYLASDARWPVWAASMLYGQILEVIERNDYDVFSRRAFVPQWKKLRTLPLAWMRSQVL
>NC_010628.1|WP_012409299.1|3434120_3435443_-|ABC-transporter-substrate-binding-protein
MRKISAVLTFSIATLAIGFLVGACGDSSNPNGTATTGSSATPAANSTTISSDKGLKIGSLLPTTGDLASVGQQMLGSVPLLVDTVNACGGVNGEQVNLVQVDDQTDPKAGAAGMTKLATLDKVAGVVGSFASSVSSAAVSIATPNKVMLVSPGSTSPVFTEKAQKGDYKGFWARTAPPDTYQALALAQLARKKGFKRVSTVVINNDYGVGFEKAFVQTFEKLGGTIVNKDKPVRYDPKAQTFDTEAAAAFAGKPDAVLAVLYAETGSLFLKAAYQQGVAKGVQILLTDGVKSPTFPEQVGKGSDGKYILTGAIGTVPGSDGKALEAFNKLWKDKKGNEPGEYAPQAWDAAALLTLAAQAAKENTGVGIAGKIREVADGPGTEVTDVCEGLKLLKDGKKINYQGASGNVDVDANGDVVGVYDVWTVGNDGKIKVIDKVTPK
>NC_010628.1|WP_012409298.1|3433211_3434057_+|hypothetical-protein
MNTIFLRKGVFWLPGIAALVVLSSGLSASAQTVDKVSSQVLTDSSATVASPNEFSTELDSVSQNLSTETTETFTATNLAEVQQLQNPVIQENASATSTPVPGTVATSSATLTSKFVQPTSQTTTQPSATKVAQSDIDLGRTTRGGSSYIGVAANIGLSGDGSSSLGDGNFAVVSKVGLTNSISVRPSAVFGDNTTILLPITYDFTFKSADAFSEPLAIAPYVGVGGAYKTGDDSQFAFLVTGGIDVPLTPQFTATASVNAGFFDQTDVGLLLGVGYNFTGL
>NC_010628.1|WP_012409297.1|3432456_3432774_-|hypothetical-protein
MSGNNIQKYRFVCTLTFGDIYGQIIVWLITITLSLASALALMGAKRPVYALATAGLVVLLSLPFLLFAFVTTLLNHIEVSPVGPGTKMEPIPGNVSQQQPVQAAS
>NC_010628.1|WP_012409296.1|3430499_3432227_-|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit
MLEHDVIIVGGGLAGCRAAVEIARTDPSLNIAVVAKTHPIRSHSVAAQGGMAASLKNVDSQDSWEAHAFDTVKGSDYLADQDAVAILTQEAPDVVIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVQVYEEWYVMRLILEENEAKGVVMFHLLDGHIEVVRAKAVMFATGGYGRVYNTTSNDYASSGDGLAMTAIAGLPLEDMEFVQFHPTGLYPVGVLISEAVRGEGAYLINSEGDRFMANYAPSRMELAPRDITSRAIAYEIRAGRGINLDGSAGGPFVYLDLRHLGKEKIMSRVPFCWEEAHRLVGVDAVTQPMPVRPTIHYCMGGIPVNTDGQVRSSGDGLVDAFFAAGETSCVSVHGANRLGSNSLLECVVYGKRTGAAIAKFVQKRKLPSVDEQRYVTEAQQQIQALLEQPGQYRINQVRQAFQDCMTEYCGVFRTEALMSEGLHKLEEIQQRYPQIYLDDKGSCWNTELVEALELRSLMIVGQTILASALNRQESRGAHFREDYSERDDTNFLKHTMAYYSPAGIDIQYRPVAITMFEPKERKY
>NC_010628.1|WP_012409295.1|3430216_3430417_+|hypothetical-protein
MNQVNYTAMSDQELKSYFLTHKDDKEAFYAYMDRRKSRHRDAAIQLNDPAWEEKIIAVIQKQLGSD
>NC_010628.1|WP_041565401.1|3430009_3430201_+|hypothetical-protein
MDELQPRVEQLRSLYRLCHQLTNVMFQPIHIVRLDERSLNIFILAGQDEGIELEIKPDGSIEP
>NC_010628.1|WP_148220315.1|3429376_3429922_+|hypothetical-protein
MMPVIRIPDPIYKRLQALAVPFEDTPITVIEKLLNEYEARYQPQQVFETENYKVLEPDTPSNLHYTRVLRAVIGSQEIHQPNWNKIVDAAHKMAIREGFSVEELIKLTLAHIVKGEKINSGFHYLPEVNISIQGVDSNLAWRNTLHLMKNLKMPIEIYFEWRDKEGAAYPGEKGKLIWNAK
>NC_010628.1|WP_052304597.1|3442419_3442614_-|hypothetical-protein
MFYIQLKQRRWNQPESLVKKAASTCKPSEVEAIKQKNFKFALSKTTEYIRNTQQACYLEFRLFS
>NC_010628.1|WP_012409303.1|3442809_3443655_+|polysaccharide-deacetylase-family-protein
MTNNYLKRQKIISFVAIASTITACSISPSASPQLGLNEPISKSHTAQVQNPAKGQVNELPPSAKVENLTFTVPTKFQGKTVYKVQLSSNKKVIALGIDDGPWPKTTLEMLDILKQNDVKVTFFWVGQALQANPDLAKQVVAEGHAIGNHTWHHWYRRMDEATAKSEIDRTSDLIYKTTGVKTSLFRPPGGFLNNGLAAYAKSQKDAVIMWSLTSADTDPHAKPQAFVNNVLKGAKPGSIVLMHDGGGDRRRTVEALPQIISGLKQQGYRFVTIPELLQMAQ
>NC_010628.1|WP_012409304.1|3443686_3444076_-|hypothetical-protein
MLKLTYTESSFDLECLTLSLEEWVAQRVILALRVGQSLCIEPSTASFLLPVDLPGVEVLKAEVKRDDREIIALCASDTQYMEVTLQGSWLSDSSKDAVGVFFTTMSDRAEFFLHKLWQEAQACASVMSE
>NC_010628.1|WP_086000624.1|3444092_3444599_-|HNH-endonuclease
MQVLEQSVVVFSQNYLPLCRINIKRAIVLLVTNKAQPLGLTTEAGWRVHSPNLVIEVPKHIRLTIASNERMWKVPPVNRREVLRRDHHSCQYCGSGKHLTLDHVMPRSKGGSHTWDNVVTACERCNSRKGDRTLFESGMQLRTKPKAPIHPAISFAEQFWIDMQASLE
>NC_010628.1|WP_012409306.1|3444733_3444985_-|hypothetical-protein
MKFSVKSIFPISTSILCATNCRASWESAAMEVEYLFMGDGSRNYGQITEGNYDFRHLSISGLIAKPQLDEESGGYRQRNAVPI
>NC_010628.1|WP_012409307.1|3445056_3445392_+|hypothetical-protein
MHTIARTPTTDMEVTSIRLERELKDKLKEIAGNQGYQALIRDILWNYVQQKSGEWKPRFSRADIRASIAATAQQEERCVLTGQLIQPQEPMLLGLTRNGDMVPLSVESLAG
>NC_010628.1|WP_041566144.1|3446280_3448302_+|GAF-domain-containing-protein
MKKPLWSPTEYVDDIDRLQTYKVKLMQHQEETAHQLVQKINQIIANTSATALMLQDIAQLLGTAFEVDCCCLVSVTGETSDEATTMNWCADQYLGLPHPEEMFSMEQLLMHSPVLQCAAEPLTIEDISIIQKSLVIGCQYLPLPIKAVLAIPTRFSGNNNGVISLIKFQPYDWSESEKQLLKEVESACAIAFSQVAQAKLITHQQQYLQKGDQYQSLIKQLTLLSRSNLELNQMLQLVIASTAESLQADRGLLILLKYTDPLFRTQGKKQIPKAKARVVGEWAKATQISRTTKPETLDQQSFLVSECGLCQRPFIDSGKAVIFDNYTEQNDTPGAAPLFAIEQLPAVLLVPLESQGKILGFLVLQQATTRSWQAAELNLVEMVCAQVSNAIIQSQTLRQVQTLVDERTAKLQSSLELQAKLHERTRQYVEQLRKLNELKDEFLSNMSDRLRYPLTNMLMSIRNLRLPGIAPERQIRYMDILEQECTKEINLINDLLTLQKLESPHEAPQLESIDLNTRIQDITVAFEKKLAEKGLKISVDLPEESLKLQTELESFDRILQELLTNACKYSQHDTNVHLEAVHRVDQQIDQVIIKVTNTGHAISQEEATYIFDKFRRGKGRWTPGTGLGLALVKSLVQHLNGAIAVESLPISDSEQSEICFTLTLPQFSDESKP
>NC_010628.1|WP_012409309.1|3448310_3448919_+|SRPBCC-family-protein
MTKEQNSTENLDFQSPSDDTNLEGDFTADIVALAAKVEVQIQKIAERQRQISAKVQIPQPVEKIWKVLTDYEALPDFLPNLAKSRLIEHPNGGIRLEQVGSQRLLNFNFSARVVLDLEECFPREINFRMVEGDFKGFSGSWCLEPYSLGEYIGTNLCYTIQVWPKLTMPVGIIENRLSKDLRLNLVAIHQRVEELANKQPYI
>NC_010628.1|WP_012409310.1|3449399_3451319_+|cation:proton-antiporter
MEASFEITLQMAIAVFAGISAQVLAAYFRIPSIVLLLLLGILFGSDGIGLLHPHLLGTGVEVIVALATAIILFEGGLNLDLRELGRVSVSLQLLVTLGTLITLLGGSMAAHWLGEFPWNIAFLYASIIVVTGPTVVGPLLKQINVDRQVATLLEGEGILIDPVGAILAFVVLDTILNGDADPINAIVGLLIRLGVGAAIGGAGGYLMSLIFKRASFLSFELKNLVVLAILWSLFTLSQMIRSESGVMTTVVAGAVFANSSVPEERLLRSFKGQLTILSVSVLFILLAADLSIASVFALGWGSLFTVLVLMFIVRPINILLCTWNSDLNWRQKLFLSWVAPRGIVAASVASFFAISLTQRGINGGDSIKALVFLTIIMTVVCQGLTAGWVAKWLQITSKDVTGVVIVGCNPLSLLIARFFQERGENVVMIDTDPECLVQAEAQNLRVIASSGLDAAVLEEAGLASMGTFLAMTSNGEVNFVLAQRAAEEFKPPRVLAVFPRDPQASISVSNKVNQAFISDLAIKTWNEYLNDGRVKLGTTTLNELEFSTQCDRIQEKIRTGVLIPLLVEREERLQVMPVNQDWEIGDRIIYLLHDPRPSLLKRLSGATQSTPLSLEKLAEVEDLSLAQLSQLSTSEAPGG
>NC_010628.1|WP_012406904.1|3451470_3452364_+|transposase-family-protein
MLNIEGALKQDRLLRALTGLNRKAFDALLPTFTTMYLDTQQAKPRQRGLGGGRKARLLTAQDKLFFILFYFKCYPTFDVAGLLFDMHRSQAHEWMHRLQPILEAALGQKMALPERHLESIEAFLSRFPGVQRVMIDGTERPIARPQEREQQQQNYSGKKKRHTRKHLAAVDETKRVLILSKAREGKLHDKRFHDEDDIAGSVPDEIPIEVDSGFQGLQKQYDNLHLPHKKPKGGKLSDLQKTENRQLSQSRVVCENAFAGVKRYNAASVIYRNRIENFDDHLMLTAAGLWNFYLMAA

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Crispr_ID: NC_010628_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_16

3440637-3440818

TypeII

A:N

Consensus_repeat	Method
CCCGACAGGATTTGAACCTGCAAAA	CRISPRCasFinder

2 spacers

Cas9_archaeal

The CRISPR arrays of NC_010628_16

>merge|NC_010628|16|3440637-3440818|CRISPRCasFinder
CCCGACAGGATTTGAACCTGCAAAAAACTAGATCCTCGGTCTAGTGCGTCTTCCGTTCCGCCACGAGAGCATTAGTGCCCCTGACAGGATTTGAACCTGCAAAATCTGGACTCTGATTCCAGCACGTATGCCAGTTCCGTCACAGGGGCATATCGGGATGGCAGGATTTGAACCTGCGACTC

>NC_010628|16|16|3440637-3440818|CRISPRCasFinder
CCCGACAGGATTTGAACCTGCAAAA	AACTAGATCCTCGGTCTAGTGCGTCTTCCGTTCCGCCACGAGAGCATTAGTGCC
CCTGACAGGATTTGAACCTGCAAAA	TCTGGACTCTGATTCCAGCACGTATGCCAGTTCCGTCACAGGGGCATATCGG
GATGGCAGGATTTGAACCTGCGACTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_148220315.1\|3429376_3429922_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409303.1\|3442809_3443655_+\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NC_010628.1\|WP_012409298.1\|3433211_3434057_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409307.1\|3445056_3445392_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041566144.1\|3446280_3448302_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_010628.1\|WP_012409310.1\|3449399_3451319_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NC_010628.1\|WP_041565401.1\|3430009_3430201_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409304.1\|3443686_3444076_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409295.1\|3430216_3430417_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409302.1\|3438596_3439685_+\|glycoside-hydrolase-family-3-protein	unknown	unknown	gnl\|CDD\|224389
NC_010628.1\|WP_086000624.1\|3444092_3444599_-\|HNH-endonuclease	Cas9_archaeal	cas9_archaeal	gnl\|CDD\|224321
NC_010628.1\|WP_012409301.1\|3436796_3438236_-\|15-cis-phytoene-desaturase	unknown	unknown	gnl\|CDD\|131778
NC_010628.1\|WP_012409300.1\|3435880_3436813_-\|phytoene-synthase	unknown	unknown	gnl\|CDD\|215339
NC_010628.1\|WP_012406904.1\|3451470_3452364_+\|transposase-family-protein	unknown	unknown	gnl\|CDD\|372577
NC_010628.1\|WP_052304597.1\|3442419_3442614_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409309.1\|3448310_3448919_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176875
NC_010628.1\|WP_012409297.1\|3432456_3432774_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409296.1\|3430499_3432227_-\|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|180319
NC_010628.1\|WP_012409299.1\|3434120_3435443_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380569
NC_010628.1\|WP_012409306.1\|3444733_3444985_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012409302.1\|3438596_3439685_+\|glycoside-hydrolase-family-3-protein	gnl\|CDD\|224389	COG1472, BglX, Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism].	1.78053e-80
NC_010628.1\|WP_086000624.1\|3444092_3444599_-\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	1.97182e-26
NC_010628.1\|WP_012409303.1\|3442809_3443655_+\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	3.58927e-73
NC_010628.1\|WP_012409301.1\|3436796_3438236_-\|15-cis-phytoene-desaturase	gnl\|CDD\|131778	TIGR02731, Phytoene_dehydrogenase_chloroplastic/chromoplastic, phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NC_010628.1\|WP_012406904.1\|3451470_3452364_+\|transposase-family-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.34968e-24
NC_010628.1\|WP_041566144.1\|3446280_3448302_+\|GAF-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.71119e-34
NC_010628.1\|WP_012409309.1\|3448310_3448919_+\|SRPBCC-family-protein	gnl\|CDD\|176875	cd08866, SRPBCC_11, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	2.71431e-64
NC_010628.1\|WP_012409310.1\|3449399_3451319_+\|cation:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.58019e-74
NC_010628.1\|WP_012409296.1\|3430499_3432227_-\|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit	gnl\|CDD\|180319	PRK05945, sdhA, succinate dehydrogenase/fumarate reductase flavoprotein subunit.	0
NC_010628.1\|WP_012409299.1\|3434120_3435443_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380569	cd06346, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.	3.1989e-111
NC_010628.1\|WP_012409300.1\|3435880_3436813_-\|phytoene-synthase	gnl\|CDD\|215339	PLN02632, PLN02632, phytoene synthase.	1.0611e-154

>NC_010628.1|WP_012409302.1|3438596_3439685_+|glycoside-hydrolase-family-3-protein
MSGSQELKRFGHHLILGISGATLSDDDKRALSELKPIGVIFFAKNFLDGTPYQVWLESFKDLNNQIREYAERDSMFMTLDHEGGRVIRTPLPITRFTHALLLRSHAQEVAKATATELKSLGINLSWAPIADVFSHPHNPVIGPRAFGNTPEIAAKDARDYYLGLQESGILGCAKHFPGHGDTSKDSHIELPILDLTLEDLRLRELIPFKALIEVQIPLIMTAHILFPKIDADLPATLSQPILNSILRKELGFQGVVVSDDLDMKAISDMFMKAGTVARSFHAGCDLFIVSRNINSSSIERTYQIAEDFVDSLSNGSLDESVVEAARERIEKLLAVTPQYPVEILDRDILLQHAKLAIASSYS
>NC_010628.1|WP_012409301.1|3436796_3438236_-|15-cis-phytoene-desaturase
MRVAIAGAGLAGLSCAKYLTDAGHTPIVLESRDVLGGLVAAWKDSDGDWYETGLHAFFGAYPNMLQLLKELGIEDRLQWKEHTLIFNQPDKPGTLSRFDVPDIPSPFNVIASILRNKDMLTWEQKIRFAVGLLPAVVRGQKYVEEMDKYSFLEWLKRRGVDERVTSDVFIAACKALTFINPDEVSATILLTALNRFLQERYGSKIAFLDGSPTERLCNPIVDYITERGGEVRLNAPLKEILLNADGTVKGYLIRGLNGAEDEVITADSYVSAISVDPLKVMLPKPWKLMEFFQKLEGLEGVPVINLHLWFDRKLTEIDHLLFSRSPLLSVYADMSNTCREYANPNRSMLELVLAPAKDWIAKSDEEIVAATLAELEKLFPDHFGGDNPATLLKSHVVKTPRSVYKATPGRQQYRPAQVTPIANFYLAGSYTMQRYLGSMEGAVLSGKLTAQAISEALPVANSSNLQTLTRPPATNAATA
>NC_010628.1|WP_012409300.1|3435880_3436813_-|phytoene-synthase
MLQLPDSPPRMKTLVSVDESYKLCRHLTAKYAKTFYLGTLLMSPVKRQSIWSIYAWCRRTDELVDGPASAITTPETLDLWEQQLESIFAGRPLENYDVALVDTLQRFPMDIQPFRDMIAGQRMDLYRSRYETFEDLYLYCYRVAGTVGLMSTEVMGVDSTLYTAPWHQNKQPYLPTEEAIALGIANQLTNILRDVGEDAKRGRIYIPLEDLEKFNYTEQDFFKGVVDDRWRALMRFQIERARQFYTTSNQGITYLASDARWPVWAASMLYGQILEVIERNDYDVFSRRAFVPQWKKLRTLPLAWMRSQVL
>NC_010628.1|WP_012409299.1|3434120_3435443_-|ABC-transporter-substrate-binding-protein
MRKISAVLTFSIATLAIGFLVGACGDSSNPNGTATTGSSATPAANSTTISSDKGLKIGSLLPTTGDLASVGQQMLGSVPLLVDTVNACGGVNGEQVNLVQVDDQTDPKAGAAGMTKLATLDKVAGVVGSFASSVSSAAVSIATPNKVMLVSPGSTSPVFTEKAQKGDYKGFWARTAPPDTYQALALAQLARKKGFKRVSTVVINNDYGVGFEKAFVQTFEKLGGTIVNKDKPVRYDPKAQTFDTEAAAAFAGKPDAVLAVLYAETGSLFLKAAYQQGVAKGVQILLTDGVKSPTFPEQVGKGSDGKYILTGAIGTVPGSDGKALEAFNKLWKDKKGNEPGEYAPQAWDAAALLTLAAQAAKENTGVGIAGKIREVADGPGTEVTDVCEGLKLLKDGKKINYQGASGNVDVDANGDVVGVYDVWTVGNDGKIKVIDKVTPK
>NC_010628.1|WP_012409298.1|3433211_3434057_+|hypothetical-protein
MNTIFLRKGVFWLPGIAALVVLSSGLSASAQTVDKVSSQVLTDSSATVASPNEFSTELDSVSQNLSTETTETFTATNLAEVQQLQNPVIQENASATSTPVPGTVATSSATLTSKFVQPTSQTTTQPSATKVAQSDIDLGRTTRGGSSYIGVAANIGLSGDGSSSLGDGNFAVVSKVGLTNSISVRPSAVFGDNTTILLPITYDFTFKSADAFSEPLAIAPYVGVGGAYKTGDDSQFAFLVTGGIDVPLTPQFTATASVNAGFFDQTDVGLLLGVGYNFTGL
>NC_010628.1|WP_012409297.1|3432456_3432774_-|hypothetical-protein
MSGNNIQKYRFVCTLTFGDIYGQIIVWLITITLSLASALALMGAKRPVYALATAGLVVLLSLPFLLFAFVTTLLNHIEVSPVGPGTKMEPIPGNVSQQQPVQAAS
>NC_010628.1|WP_012409296.1|3430499_3432227_-|succinate-dehydrogenase/fumarate-reductase-flavoprotein-subunit
MLEHDVIIVGGGLAGCRAAVEIARTDPSLNIAVVAKTHPIRSHSVAAQGGMAASLKNVDSQDSWEAHAFDTVKGSDYLADQDAVAILTQEAPDVVIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVQVYEEWYVMRLILEENEAKGVVMFHLLDGHIEVVRAKAVMFATGGYGRVYNTTSNDYASSGDGLAMTAIAGLPLEDMEFVQFHPTGLYPVGVLISEAVRGEGAYLINSEGDRFMANYAPSRMELAPRDITSRAIAYEIRAGRGINLDGSAGGPFVYLDLRHLGKEKIMSRVPFCWEEAHRLVGVDAVTQPMPVRPTIHYCMGGIPVNTDGQVRSSGDGLVDAFFAAGETSCVSVHGANRLGSNSLLECVVYGKRTGAAIAKFVQKRKLPSVDEQRYVTEAQQQIQALLEQPGQYRINQVRQAFQDCMTEYCGVFRTEALMSEGLHKLEEIQQRYPQIYLDDKGSCWNTELVEALELRSLMIVGQTILASALNRQESRGAHFREDYSERDDTNFLKHTMAYYSPAGIDIQYRPVAITMFEPKERKY
>NC_010628.1|WP_012409295.1|3430216_3430417_+|hypothetical-protein
MNQVNYTAMSDQELKSYFLTHKDDKEAFYAYMDRRKSRHRDAAIQLNDPAWEEKIIAVIQKQLGSD
>NC_010628.1|WP_041565401.1|3430009_3430201_+|hypothetical-protein
MDELQPRVEQLRSLYRLCHQLTNVMFQPIHIVRLDERSLNIFILAGQDEGIELEIKPDGSIEP
>NC_010628.1|WP_148220315.1|3429376_3429922_+|hypothetical-protein
MMPVIRIPDPIYKRLQALAVPFEDTPITVIEKLLNEYEARYQPQQVFETENYKVLEPDTPSNLHYTRVLRAVIGSQEIHQPNWNKIVDAAHKMAIREGFSVEELIKLTLAHIVKGEKINSGFHYLPEVNISIQGVDSNLAWRNTLHLMKNLKMPIEIYFEWRDKEGAAYPGEKGKLIWNAK
>NC_010628.1|WP_052304597.1|3442419_3442614_-|hypothetical-protein
MFYIQLKQRRWNQPESLVKKAASTCKPSEVEAIKQKNFKFALSKTTEYIRNTQQACYLEFRLFS
>NC_010628.1|WP_012409303.1|3442809_3443655_+|polysaccharide-deacetylase-family-protein
MTNNYLKRQKIISFVAIASTITACSISPSASPQLGLNEPISKSHTAQVQNPAKGQVNELPPSAKVENLTFTVPTKFQGKTVYKVQLSSNKKVIALGIDDGPWPKTTLEMLDILKQNDVKVTFFWVGQALQANPDLAKQVVAEGHAIGNHTWHHWYRRMDEATAKSEIDRTSDLIYKTTGVKTSLFRPPGGFLNNGLAAYAKSQKDAVIMWSLTSADTDPHAKPQAFVNNVLKGAKPGSIVLMHDGGGDRRRTVEALPQIISGLKQQGYRFVTIPELLQMAQ
>NC_010628.1|WP_012409304.1|3443686_3444076_-|hypothetical-protein
MLKLTYTESSFDLECLTLSLEEWVAQRVILALRVGQSLCIEPSTASFLLPVDLPGVEVLKAEVKRDDREIIALCASDTQYMEVTLQGSWLSDSSKDAVGVFFTTMSDRAEFFLHKLWQEAQACASVMSE
>NC_010628.1|WP_086000624.1|3444092_3444599_-|HNH-endonuclease
MQVLEQSVVVFSQNYLPLCRINIKRAIVLLVTNKAQPLGLTTEAGWRVHSPNLVIEVPKHIRLTIASNERMWKVPPVNRREVLRRDHHSCQYCGSGKHLTLDHVMPRSKGGSHTWDNVVTACERCNSRKGDRTLFESGMQLRTKPKAPIHPAISFAEQFWIDMQASLE
>NC_010628.1|WP_012409306.1|3444733_3444985_-|hypothetical-protein
MKFSVKSIFPISTSILCATNCRASWESAAMEVEYLFMGDGSRNYGQITEGNYDFRHLSISGLIAKPQLDEESGGYRQRNAVPI
>NC_010628.1|WP_012409307.1|3445056_3445392_+|hypothetical-protein
MHTIARTPTTDMEVTSIRLERELKDKLKEIAGNQGYQALIRDILWNYVQQKSGEWKPRFSRADIRASIAATAQQEERCVLTGQLIQPQEPMLLGLTRNGDMVPLSVESLAG
>NC_010628.1|WP_041566144.1|3446280_3448302_+|GAF-domain-containing-protein
MKKPLWSPTEYVDDIDRLQTYKVKLMQHQEETAHQLVQKINQIIANTSATALMLQDIAQLLGTAFEVDCCCLVSVTGETSDEATTMNWCADQYLGLPHPEEMFSMEQLLMHSPVLQCAAEPLTIEDISIIQKSLVIGCQYLPLPIKAVLAIPTRFSGNNNGVISLIKFQPYDWSESEKQLLKEVESACAIAFSQVAQAKLITHQQQYLQKGDQYQSLIKQLTLLSRSNLELNQMLQLVIASTAESLQADRGLLILLKYTDPLFRTQGKKQIPKAKARVVGEWAKATQISRTTKPETLDQQSFLVSECGLCQRPFIDSGKAVIFDNYTEQNDTPGAAPLFAIEQLPAVLLVPLESQGKILGFLVLQQATTRSWQAAELNLVEMVCAQVSNAIIQSQTLRQVQTLVDERTAKLQSSLELQAKLHERTRQYVEQLRKLNELKDEFLSNMSDRLRYPLTNMLMSIRNLRLPGIAPERQIRYMDILEQECTKEINLINDLLTLQKLESPHEAPQLESIDLNTRIQDITVAFEKKLAEKGLKISVDLPEESLKLQTELESFDRILQELLTNACKYSQHDTNVHLEAVHRVDQQIDQVIIKVTNTGHAISQEEATYIFDKFRRGKGRWTPGTGLGLALVKSLVQHLNGAIAVESLPISDSEQSEICFTLTLPQFSDESKP
>NC_010628.1|WP_012409309.1|3448310_3448919_+|SRPBCC-family-protein
MTKEQNSTENLDFQSPSDDTNLEGDFTADIVALAAKVEVQIQKIAERQRQISAKVQIPQPVEKIWKVLTDYEALPDFLPNLAKSRLIEHPNGGIRLEQVGSQRLLNFNFSARVVLDLEECFPREINFRMVEGDFKGFSGSWCLEPYSLGEYIGTNLCYTIQVWPKLTMPVGIIENRLSKDLRLNLVAIHQRVEELANKQPYI
>NC_010628.1|WP_012409310.1|3449399_3451319_+|cation:proton-antiporter
MEASFEITLQMAIAVFAGISAQVLAAYFRIPSIVLLLLLGILFGSDGIGLLHPHLLGTGVEVIVALATAIILFEGGLNLDLRELGRVSVSLQLLVTLGTLITLLGGSMAAHWLGEFPWNIAFLYASIIVVTGPTVVGPLLKQINVDRQVATLLEGEGILIDPVGAILAFVVLDTILNGDADPINAIVGLLIRLGVGAAIGGAGGYLMSLIFKRASFLSFELKNLVVLAILWSLFTLSQMIRSESGVMTTVVAGAVFANSSVPEERLLRSFKGQLTILSVSVLFILLAADLSIASVFALGWGSLFTVLVLMFIVRPINILLCTWNSDLNWRQKLFLSWVAPRGIVAASVASFFAISLTQRGINGGDSIKALVFLTIIMTVVCQGLTAGWVAKWLQITSKDVTGVVIVGCNPLSLLIARFFQERGENVVMIDTDPECLVQAEAQNLRVIASSGLDAAVLEEAGLASMGTFLAMTSNGEVNFVLAQRAAEEFKPPRVLAVFPRDPQASISVSNKVNQAFISDLAIKTWNEYLNDGRVKLGTTTLNELEFSTQCDRIQEKIRTGVLIPLLVEREERLQVMPVNQDWEIGDRIIYLLHDPRPSLLKRLSGATQSTPLSLEKLAEVEDLSLAQLSQLSTSEAPGG
>NC_010628.1|WP_012406904.1|3451470_3452364_+|transposase-family-protein
MLNIEGALKQDRLLRALTGLNRKAFDALLPTFTTMYLDTQQAKPRQRGLGGGRKARLLTAQDKLFFILFYFKCYPTFDVAGLLFDMHRSQAHEWMHRLQPILEAALGQKMALPERHLESIEAFLSRFPGVQRVMIDGTERPIARPQEREQQQQNYSGKKKRHTRKHLAAVDETKRVLILSKAREGKLHDKRFHDEDDIAGSVPDEIPIEVDSGFQGLQKQYDNLHLPHKKPKGGKLSDLQKTENRQLSQSRVVCENAFAGVKRYNAASVIYRNRIENFDDHLMLTAAGLWNFYLMAA

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Crispr_ID: NC_010628_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_18

3655866-3655980

Orphan

A:N

Consensus_repeat	Method
TCCACGATGTTTTGTAAGTAAGCGTGGGTGTTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_18

>merge|NC_010628|18|3655866-3655980|CRISPRCasFinder
TCCACGATGTTTTGTAAGTAAGCGTGGGTGTTTCAGTACGATTTTGTACCAGTAGATTTGTACTGTCAATAGAATTACTTGTCCACGATGTTTTGTATGTAAGCGTGGGTGTTTC

>NC_010628|18|18|3655866-3655980|CRISPRCasFinder
TCCACGATGTTTTGTAAGTAAGCGTGGGTGTTTC	AGTACGATTTTGTACCAGTAGATTTGTACTGTCAATAGAATTACTTG
TCCACGATGTTTTGTATGTAAGCGTGGGTGTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_041566160.1\|3652917_3653814_+\|aspartoacylase	unknown	unknown	gnl\|CDD\|235019
NC_010628.1\|WP_193372263.1\|3648358_3648547_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409475.1\|3657882_3659022_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_010628.1\|WP_012409477.1\|3660114_3661413_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NC_010628.1\|WP_041565423.1\|3650390_3650573_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409480.1\|3663434_3664949_-\|C-3',4'-desaturase-CrtD	unknown	unknown	gnl\|CDD\|274272
NC_010628.1\|WP_012408090.1\|3648696_3649719_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_010628.1\|WP_012409468.1\|3647284_3647596_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409476.1\|3659225_3659495_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409479.1\|3662209_3663316_-\|saccharopine-dehydrogenase-NADP-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224662
NC_010628.1\|WP_012409474.1\|3656634_3657804_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_010628.1\|WP_012409481.1\|3669594_3670107_+\|flavodoxin-FldA	unknown	unknown	gnl\|CDD\|236439
NC_010628.1\|WP_012409470.1\|3650904_3651258_+\|Spx/MgsR-family-RNA-polymerase-binding-regulatory-protein	unknown	unknown	gnl\|CDD\|273720
NC_010628.1\|WP_012409478.1\|3661557_3661947_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409467.1\|3646782_3646998_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409469.1\|3647761_3648187_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_167315628.1\|3667698_3667887_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409471.1\|3651577_3652747_-\|AGE-family-epimerase/isomerase	unknown	unknown	gnl\|CDD\|225493
NC_010628.1\|WP_041565426.1\|3668695_3668902_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565421.1\|3646361_3646790_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379313

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_041566160.1\|3652917_3653814_+\|aspartoacylase	gnl\|CDD\|235019	PRK02259, PRK02259, aspartoacylase; Provisional.	3.10581e-172
NC_010628.1\|WP_012409474.1\|3656634_3657804_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.72962e-57
NC_010628.1\|WP_012409475.1\|3657882_3659022_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	6.71029e-55
NC_010628.1\|WP_012409477.1\|3660114_3661413_+\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.13969e-68
NC_010628.1\|WP_012409471.1\|3651577_3652747_-\|AGE-family-epimerase/isomerase	gnl\|CDD\|225493	COG2942, COG2942, N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism].	6.58513e-145
NC_010628.1\|WP_012409470.1\|3650904_3651258_+\|Spx/MgsR-family-RNA-polymerase-binding-regulatory-protein	gnl\|CDD\|273720	TIGR01617, Uncharacterized_protein_UU176, transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B. [Regulatory functions, DNA interactions].	1.33542e-44
NC_010628.1\|WP_012409481.1\|3669594_3670107_+\|flavodoxin-FldA	gnl\|CDD\|236439	PRK09267, PRK09267, flavodoxin FldA; Validated.	1.0016e-97
NC_010628.1\|WP_012408090.1\|3648696_3649719_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.52298e-17
NC_010628.1\|WP_012409480.1\|3663434_3664949_-\|C-3',4'-desaturase-CrtD	gnl\|CDD\|274272	TIGR02733, similar_to_to_phytoene_dehydrogenase, C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NC_010628.1\|WP_012409479.1\|3662209_3663316_-\|saccharopine-dehydrogenase-NADP-binding-domain-containing-protein	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	2.47927e-88
NC_010628.1\|WP_041565421.1\|3646361_3646790_-\|hypothetical-protein	gnl\|CDD\|379313	pfam13650, Asp_protease_2, Aspartyl protease. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix.	0.00637669

>NC_010628.1|WP_041566160.1|3652917_3653814_+|aspartoacylase
MSQIKRVAIVGGNHGNELTGVYLVKKFQQYPNLINRTSFETLPLLGNLKAIEEGKRYIDRDLNRCFTNQGLQNPQLSSYEDTRAKAIQQVLQPQNQPFVDVIVDLHSTTANMGLSLIFCDLNPFLLRLAAYLSSINPMVKVFVNQQSKEGGFLRSLCELGFVIEVGAVAQNILNAELFQQTEQLIYAILDYFEGCNQGNIPHTSSQLTFYQYIETIDYPRSDAYGGLQSGEIQAMIHPQLQFKDYEPLNPGDPMFLTFAGKDIFYEGESTVYPIFINEAAYYEKGIAMYLSQKLQEIV
>NC_010628.1|WP_012409471.1|3651577_3652747_-|AGE-family-epimerase/isomerase
MEYNFQAIAELYKNALLNDVLPFWEKYSLDWQQGGYFTCLDREGKIYDTDKFIWLQNRQVWTFSMLYNQLEKRENWLKIASNGANFLAQHGRDSDGNWYFALTREGKPLVEPYNIFSDCFAAMAFSKYALAGGEEWAKDVAMQAYNNVLRRKDNPKGKYNKTYPGTRPMKSLAVPMILANLTLEMEWLLPKETLENVLAETQGEVMTDFLDLERGLMYENVAPDGSHIDSFEGRLINPGHGIEAMWFIMDIAHRKNDTKIINQAVDVMLNILNFAWDSEYGGLYYFMDADGHPPQHLEWDQKLWWVHLESLVALAMGYRLTGREVCWEWYQKMHDYAWSHFADSEYGEWFGYLNRRGEVLLNLKGGKWKGCFHVPRALYLCWQQFEALK
>NC_010628.1|WP_012409470.1|3650904_3651258_+|Spx/MgsR-family-RNA-polymerase-binding-regulatory-protein
MSIQVYGIPNCGTCKKALMWLQSNSIEYEFINTKETPPKSEMIQNWMKSLGSAPMRNTSGQSYRALGDEKKTWTDQQWIDAFTNDAMLLKRPIFVKDGTAVLVGFRDEAVIKTKLKL
>NC_010628.1|WP_041565423.1|3650390_3650573_-|hypothetical-protein
MFPFWGNPCYGSEPISHKASLERKLKFLIWIRDDLESKLAGINASIDTIRQQIERSDSAT
>NC_010628.1|WP_012408090.1|3648696_3649719_+|IS4-family-transposase
MIINSFPKIVKDILRGLPKNDYPVLNSRLFFECWLSYAMDNSLTSMRDLFNRLNNTGFPVDISTFSKANLHRSQKPFQEIYQKLNELVQKKVQKKLHDKYAICPIDSTIITLTSKLLWVLGHHQVKLFSSLNLATGSPSDNFINFGHDHDYKFGCKMMSSLPNNAVGVMDRGFAGLKFIQELVQENKYFVLRVKNNWKLEFEEQTGLIKVGASNDAQAYRVINFCDLETKTEFRLVTNLPTLGEAAVSDYEIRDIYRLRWGVELLWKFLKMHLKLDKLITKNVNGITIQIYVTLIAYLILQILSVPQQWGHTLLDKFRYLQSCMCQKISYVHWFEEMMSC
>NC_010628.1|WP_193372263.1|3648358_3648547_+|hypothetical-protein
MSTLTMPSSNQRSQHTKKTQTMSVSNTNTVNAGKDGNRASFVKKNDAPARIAVAFLFSIWGS
>NC_010628.1|WP_012409469.1|3647761_3648187_+|hypothetical-protein
MSLKTRGSAAVDKAQRRLALLKSINENLDLGHGLTIEAYTRFLDNTRATLEAHNTLLSNLEESRKTMNQMDRGLSELSERMLSAVATVYGKNSMEYSKAGGSSRKRSTSKKSISQVPIVVTVPVTQPTQTVTNGKGSLSNF
>NC_010628.1|WP_012409468.1|3647284_3647596_+|hypothetical-protein
MIAFAILVIAFAILVIAFAISATAFAISAIAFAISATAFAISATAFAISATAFAISATAFAILATAFAILATAFAISTTAFAISATAFAISATEFAILAIGVI
>NC_010628.1|WP_012409467.1|3646782_3646998_-|hypothetical-protein
MVSAELISTLRELSRADKFYIMQVLISELAQQETDLIKPDQFYHVWSPYDAVEAADTMLKVLQAAKTQDHA
>NC_010628.1|WP_041565421.1|3646361_3646790_-|hypothetical-protein
MRNAQRYSFIPIDVALGEASFRPYLPLTLIYQQSSVMTSGLLDTGASVNVLSYSVGVELGYVWEQQTTALSLTGNLAQYEARVAVLQAVVGQFEPVQLVFAWTKATNVPLILGQVNFFMEFDVCFYRSHLQFEISPKSVASE
>NC_010628.1|WP_012409474.1|3656634_3657804_+|glycosyltransferase-family-4-protein
MKNKAESLASSSASILTLGLGWFPKNPGGLERYMYELTHKLAANKDQIELCGVGLPEAERNSPIKLTNLASPDSAIWQRLWSIRTNFQKTRTNKPDAINLHFALYSFPLLDILPKGVPVTFNFHGPWASESQQEVVNKNLSLLIKHHLIEKNTYNHCDRFIVLSKAFGKILHDKYQVPWSKINIIPGGVDINWFQPNLSRQDACKQLGWPNNRRIIFTSRRLVHRTGVDKLLKALAIIKPRIPDVWLAIAGRGHIQAALQQQATELGLDDNVKFLGFLPDEQLPIAYQAAELTIMPSQSFEGFGLVIVESLACGTPVLCTPVGGMPEILSEFSPDLITTSTEASAIAEKLEQVLLGNIPIPSREACRHYAVTHYDWNQIAQQVRNVLLN
>NC_010628.1|WP_012409475.1|3657882_3659022_+|glycosyltransferase-family-4-protein
MRIFFLDQSGKPGGAELCLIDIAKPYSHSALVGLFADGPFKDLLEQNHIPVEILATQTIQVSKESSLAQGLKSLGQLAPLITKVIKKAREYDLIYANTQKALVVGALASFFSRRPLVYHLHDILSTEHFSQTNLRIAINLANRCASLVIANSQASKTAFIQAGGRSDIVEVVYNGFDLKIYQTDEPGINQLQQKLGLQGKFVVGHFSRLAPWKGQHILIDALAKCPPEVTVILVGDALFGEQDYAQKLHKQVTDLGLENRVKFLGFRSDIPQLMAACDLVAHTSTSPEPFGRVIVEAMLCGKPVVAAKAGGVMELVEHGLNGFLVTPGEPQELAQVIITCLQETEITATIANNARTTASRRFDVATINQQIAQLLSHRF
>NC_010628.1|WP_012409476.1|3659225_3659495_-|hypothetical-protein
MMKHYILNLNPTAKHEWDRCILRDPLTAKRPDIAKLIAEAVGADTGSYLVSVNIEVQVLEQAAVPQAEQLSLSFPEVSVQSQPQLREAA
>NC_010628.1|WP_012409477.1|3660114_3661413_+|sodium:proton-antiporter
MVDIYIIDLFVIGLLLLMVTLGSGWITRLPLSFAIIYLIVGISLGPYAFGLIQLRRDEVFNAELLEKITELVVIISVFSCGLRIVRPLRLGVWDITVRLILFLMPISIFALAVVGKLFLGMNWGEAILLGAILAPTDPVLASEVQLTDINDQDELRFGLTSEGGLNDALAFPFVYFGLHALKDDNWGNWFKQWVAVDLIWAITVGIIMGIVVAKSIVWIEKKIQKRRPADKLMEDFIAISTILITYSLTEMVNGYGFLAVFVAGLVVQRSYRNPEKPLAQLEFIEQVEKLLEVGTILLLGSILLLKPILNYAMQSLLVIILLFLIIRPVGVWISTIGKRPLDSRRRTFHAETRWLFGWFGIRGVGSLYYLAYAFGNGLKGEPAEQIAWITYTTIVASVIIHGISATPLMKWYERNFANRRKTTPPDTIDEFE
>NC_010628.1|WP_012409478.1|3661557_3661947_-|hypothetical-protein
MQKILLSLKKALSSSFLVVCLMVSISLSGSFIFVQQASYATTLEELKLVPPEFKPNSEEKINRANEYDPGVGIQEEERQKAYEQAIKDSKNLNTIEKTYERNLKAEQEQNPPETFGEKAKEVIEKVTGK
>NC_010628.1|WP_012409479.1|3662209_3663316_-|saccharopine-dehydrogenase-NADP-binding-domain-containing-protein
MTDRVLILGGRGRIGSSVAQDLANHTQAQITITGRSAEFGKAVSLSSGGQVQFLVLDLVEVDKLQNAIANSNLVIHCAGPFHYRDTNVLETCIAQGVNYVDVSDHRSYTSKALNFSEQAAAAGVTAIINTGIFPGISNSMVRQGVEQFDKPENIHLSYLVSGSGGAGITVMRTTFLGLQYPFETWIDGKWQVIKPYSERELVEFPPPYGRSGVYWFDMPETFTLPKAFPSVKTVITKFGSVPDFYNHLTWIAAHIFPKWLMQRRYMIEFLSHVSHSMTDVTNNFSGIGVAVRSEVTGQKDGKTAVYCSTVVHENTALASGCGTGSIAQLLLEGKLKKPGVFAVEEALPTDLFEEVMQSRGIKINHSWL
>NC_010628.1|WP_012409480.1|3663434_3664949_-|C-3',4'-desaturase-CrtD
MSSISLDKSNSHVIVIGAGIGGLTAGALLAHRGYSVLVLDQALVPGGCASTFKRQGFTFDVGATQVAGLEPGGIHHRIFSELSIDLPQATPCDPACAVYLPGESTPINVWRDQEKWQEERQRQFPGSEPFWQLMATLFDASWEFQGRDPVLPPRNLWDLWQLAQAVRPSTLITVPFTLFTVGDALRLCGLGNDQRLRTFLDLQLKLYSQVDAEQTALLYAATALSVSQLPQGLFHLQGSMQVLSDRLVQSLERDGGKLLMRHTVEEIKVESGKATAVVIRNQKTGEVWTEAANHIVSNVTVQNLVQLLGEQAPSGYKNRVEKLPQASGAFVVYLGVDASAIPPGCPPHLQFLYDVNGPIGENNSLFVSVSHPGDGRAPEGKATIIASSFVDPAQWWETEDYEGLKEKFTQEAIARLAQYFYLKPETIIHQEAATPRTFAHFTARDRGIVGGIGQRIPTFGPFGFANRTPIQHLWLVGDSTHPGEGTAGVSYSALTVVRQIESQM
>NC_010628.1|WP_167315628.1|3667698_3667887_-|hypothetical-protein
MPIAKLVMSEEEQGLVSQKVKRKELRIKFQDFISSLLSFALRVRHLLYAGAPVHRSGSPFYF
>NC_010628.1|WP_041565426.1|3668695_3668902_+|hypothetical-protein
MQQSRSIIALNQSNRPTTPNSGDVNSQHLVNPLVCLGDGHDNVWNLVKEFAIASVLCISARWRSRSES
>NC_010628.1|WP_012409481.1|3669594_3670107_+|flavodoxin-FldA
MSNIGLFFGTQTGNTQTESEIIQKEFGGDSVVTLYDISQAEPSDFNNYDYIVVGCPTWNVGELQSDWENFYDELDNIDFIGKKVAYFAPGDQVGYPDTFQDALGILEEKISENGGETVGYWPTEGYEFSESKAVRDGKFVGLALDEDNQSDLTEERIKAWVTQLKPEFGL

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Click the colored protein region to show detailed information

Crispr_ID: NC_010628_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_19

4536246-4536322

Orphan

A:N

Consensus_repeat	Method
TTAACGAAGCAAAAGCTAACCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_19

>merge|NC_010628|19|4536246-4536322|CRISPRCasFinder
TTAACGAAGCAAAAGCTAACCAGGATAAAACCCTCGCCAGCTTACAACAGCAGATTAACGAAGCAAAAGCTAACCTG

>NC_010628|19|19|4536246-4536322|CRISPRCasFinder
TTAACGAAGCAAAAGCTAACCAG	GATAAAACCCTCGCCAGCTTACAACAGCAGA
TTAACGAAGCAAAAGCTAACCTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012409962.1\|4531045_4532260_+\|DUF790-family-protein	unknown	unknown	gnl\|CDD\|368530
NC_010628.1\|WP_012409959.1\|4524662_4527782_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|223715
NC_010628.1\|WP_083782417.1\|4533910_4534399_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NC_010628.1\|WP_012409973.1\|4545722_4547078_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|377544
NC_010628.1\|WP_012409970.1\|4540434_4542039_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_010628.1\|WP_041566272.1\|4547879_4548761_-\|fructosamine-kinase-family-protein	unknown	unknown	gnl\|CDD\|367711
NC_010628.1\|WP_012409961.1\|4529490_4531116_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|223989
NC_010628.1\|WP_012409969.1\|4539175_4540357_+\|CapA-family-protein	unknown	unknown	gnl\|CDD\|214858
NC_010628.1\|WP_012409960.1\|4528077_4529379_-\|adenylate/guanylate-cyclase-with-integral-membrane-sensor	unknown	unknown	gnl\|CDD\|306677
NC_010628.1\|WP_012409958.1\|4522281_4524147_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NC_010628.1\|WP_012409965.1\|4534579_4535194_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NC_010628.1\|WP_167315645.1\|4524219_4524360_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012409963.1\|4532341_4533673_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NC_010628.1\|WP_012409967.1\|4536798_4537974_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|130253
NC_010628.1\|WP_041565500.1\|4544131_4545421_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009
NC_010628.1\|WP_193372244.1\|4547165_4547486_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227835
NC_010628.1\|WP_012409968.1\|4538040_4538745_+\|DevA-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274374
NC_010628.1\|WP_012409957.1\|4521345_4522008_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|178094
NC_010628.1\|WP_012409971.1\|4542706_4544035_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|378508
NC_010628.1\|WP_012409976.1\|4549018_4550344_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012409962.1\|4531045_4532260_+\|DUF790-family-protein	gnl\|CDD\|368530	pfam05626, DUF790, Protein of unknown function (DUF790). This family consists of several hypothetical archaeal proteins of unknown function.	0
NC_010628.1\|WP_012409959.1\|4524662_4527782_-\|PAS-domain-S-box-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.05435e-58
NC_010628.1\|WP_083782417.1\|4533910_4534399_+\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	8.5131e-58
NC_010628.1\|WP_012409973.1\|4545722_4547078_-\|ATP-binding-protein	gnl\|CDD\|377544	pfam05673, DUF815, Protein of unknown function (DUF815). This family consists of several bacterial proteins of unknown function.	6.04336e-137
NC_010628.1\|WP_012409970.1\|4540434_4542039_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.61446e-80
NC_010628.1\|WP_012409961.1\|4529490_4531116_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	2.38966e-101
NC_010628.1\|WP_012409969.1\|4539175_4540357_+\|CapA-family-protein	gnl\|CDD\|214858	smart00854, PGA_cap, Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.	7.31035e-68
NC_010628.1\|WP_012409960.1\|4528077_4529379_-\|adenylate/guanylate-cyclase-with-integral-membrane-sensor	gnl\|CDD\|306677	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain.	2.11092e-81
NC_010628.1\|WP_012409958.1\|4522281_4524147_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	2.76939e-07
NC_010628.1\|WP_012409965.1\|4534579_4535194_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.27635e-18
NC_010628.1\|WP_041566272.1\|4547879_4548761_-\|fructosamine-kinase-family-protein	gnl\|CDD\|367711	pfam03881, Fructosamin_kin, Fructosamine kinase. This family includes eukaryotic fructosamine-3-kinase enzymes. The family also includes bacterial members that have not been characterized but probably have a similar or identical function.	1.05347e-157
NC_010628.1\|WP_012409963.1\|4532341_4533673_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	0
NC_010628.1\|WP_012409967.1\|4536798_4537974_+\|FtsX-like-permease-family-protein	gnl\|CDD\|130253	TIGR01185, membrane_spanning_subunit, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. [Transport and binding proteins, Other].	5.68276e-167
NC_010628.1\|WP_041565500.1\|4544131_4545421_-\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	7.36946e-16
NC_010628.1\|WP_193372244.1\|4547165_4547486_+\|hypothetical-protein	gnl\|CDD\|227835	COG5548, COG5548, Small integral membrane protein [Function unknown].	5.29225e-25
NC_010628.1\|WP_012409968.1\|4538040_4538745_+\|DevA-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274374	TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.	5.71573e-147
NC_010628.1\|WP_012409957.1\|4521345_4522008_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|178094	PLN02476, PLN02476, O-methyltransferase.	1.53233e-81
NC_010628.1\|WP_012409971.1\|4542706_4544035_-\|ATP-binding-protein	gnl\|CDD\|378508	pfam10923, DUF2791, P-loop Domain of unknown function (DUF2791). This is a family of proteins found in archaea and bacteria. This domain contains a P-loop motif suggesting it binds to a nucleotide such as ATP.	0
NC_010628.1\|WP_012409976.1\|4549018_4550344_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.13029e-105

>NC_010628.1|WP_012409965.1|4534579_4535194_-|TetR/AcrR-family-transcriptional-regulator
MVRIKTGEVDRDNSVDKVEQILQGAMQEFLQNGYAGTSMDRVAVAAGVSKATVYSHFQDKEGLFKVLLEQLTSKKNSSIFGTEPIEGEPAAILRQIVTKALEQMINDQEHSAFMRVLIGESGRFPELAQICVRVMIKPVVETLTQYLEAPELKIPDPEATARILLGTLVHFHITQNVMHGQDIVPMESDRLIDALTHLITKCAD
>NC_010628.1|WP_083782417.1|4533910_4534399_+|translation-initiation-factor-IF-3
MAIQKQLINSQIKSPHVFLIDHENNNRGLIDTNEALQLAESLELDLVVVSQGKEAPIAKILNYGKLQYQKKKRQSQSARPTVKEVRFGLNVGVADYNLRIEKAVGWLSKGDSVKFAIRLRGREHQYRDQAGELLDRIAKDLSQVGKIQSLDKRSLIVQVIPA
>NC_010628.1|WP_012409963.1|4532341_4533673_-|DEAD/DEAH-box-helicase
MNFSTLGLSNEIIRAVTERGYTEPTPIQRQAIPAVLSGSDLLAGAQTGTGKTASFTLPLLHRLSSEKNVKVTSNGYRPIRALILTPTRELAAQVEESVREYGKYLQLNSMVMFGGVGINLQKQRLKNRVDILVATPGRLLDHVQQGTLNLSHIEVLVLDEADRMLDMGFIHDIRRILAILPKQRQNLLFFATFSDKIKALAAGLLNNPKMIEVARRNVTAETIAQKIYQVDRDKKRQLLAHLIRRDNWYQVLVFTRTKYGADRLVKQLGEDRIQALAIHGNKSQPVRTNALAKFKNGSLQVLVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLVCVDEYSLLTDIEKLIEQRLPREVVAGFGPNPDTTAEPIPNGRQHRPKSGGEKRSPRTPKPLPRTSAKRKAAPPATNGEKPGARSSASRRSK
>NC_010628.1|WP_012409962.1|4531045_4532260_+|DUF790-family-protein
MLPTDLLMHRQNGEEIIPKRLKIDRGTSDLAIELINYFQSAVGKTQGVLERQLTDFEGDSTDYRVKRGLAYILKSSFCTFEVVSPLEPQMLRERVFSLAAKSVSSRESTQITLSKIADELTQELEREVLLEQVRNGLYADLSENKILTVFDAPTAPDLLNRYNLSQVQGVFYKASQLVLNAHRNVPGEYKLLFRYLKLFQLMAYIEGDADHGFTITIDGPTSLFNPSTRYGLAIAKLIPALLHVTKWSLSSILQTRDAYTNAWKTGRFTLNSECGLVSHYPPGKPYDSMLEASFADKWDALKSGWALEREVDLIPIPGSVMIPDFRLVHSDGRTFLLEIVGYWRPEYLQKKFSQVRRAGRDDLILAISERLNLEKAGVKLNDVPARIVWFKDKLLPKAVLAVMD
>NC_010628.1|WP_012409961.1|4529490_4531116_+|DEAD/DEAH-box-helicase-family-protein
MARTPTLNFDRGTLILHPPPRGKGWMDYATWDDRVEKFRIPAIRYRSLVEALQAEDVNFIDEAKQFYPVDLVPTLEMEPYPHQTEALAAWKLAGRQGVVVLPTAAGKTYLAQMAMQSTPRTTLIVVPTLDLMHQWYAHLVAAFPDAEVGLLGGGSRDRTAILVATYDSAAIHAETLGNQYALIVFDECHHLPTDFNRVIAEYAIAPYRLGLSATPERTDGKHADLNILIGEEVYRKRAEDLAGKALAEHEIVQIKVKLSQLERERYNQLIQTRNDFLKQSKISLGSLQGWQMFVQMSARSQSGRRAMLAHREAKDIALGTDGKLRILINLLAEHYPARILIFTADNATVYRISQELLIPAITHQTPVKERHEILTKFREGKYNTLVASHVLNEGVDVPAATVAIILSGTGSAREYTQRLGRILRKGNIENKQAILYEVVAEDTSEEGTSARRRGERNNEPQRRGGRREEEEKKGKLQVVYGSEKERSLKAAEQLEINYSVQNPKLVLSEVEVSKIQNSDVTDRLTDASPKRRGDHSEETED
>NC_010628.1|WP_012409960.1|4528077_4529379_-|adenylate/guanylate-cyclase-with-integral-membrane-sensor
MIHPINSDKTQLDALISHGMSNRQTNNNLAESYKEQRQSFLLKRLQLQAQIMLVAGLTLIAFFLWANSYLEAKIYAFKIGIVVELFIFICWGLCKTSIGRRHPDLIFLSLCWAVTCVVQIDIALLFNNLEPRSNIWTLMFLTQATIIPVQWWMHLISQLGTILCYLILYFLYNPILKNPSAFYVEQGLYFFWTCIICVFSVFLYERLRKKEFYARKAMELAQQKSERLLLNILPGMIAEQLKQQPTTIADSFMEVTVLFADIVGFTELSARTSPTELVELLNTIFCLFDQLAELHKVEKIKTIGDAYMAVAGLPNQSKDHALAIANMALDMQNAIAIFNAENNQLFSIRIGISTGPVVAGVIGLKKFAYDLWGDTVNTASRMESHGIAGNIQVCEATYQLLKDKYLFDKRGLIQVKGKGEMMTYILKKVNFKN
>NC_010628.1|WP_012409959.1|4524662_4527782_-|PAS-domain-S-box-protein
MKGTRSLLAPYAVALLAVGSALLLTLLLQPLLKPTIFLLFFAAVAVSAWYGGMEAGLLATALSTLTVSYFFLEPVFSLSVASLDNIRRLGLFVLVTTFITLLNSELRTAKQHLQMSLQKLKVSEAKFRRLVESNIIGIIVANMDGAIAEANDAFLRMVGYSQEDLLAGRVRWRDMIPPKYIEANNSAIAELKAKGVCQPFENEYIRKDQNCVPILLGSALLENNSNDIISFVLDLSERKQVELALCQSEERYRAFLEQSSEGIWCIELEVPISPDCPEDEQIQHFYQYVYLAECNNVMAQMYGCSRAEEIINARLGDFLIPSDPHNIAYLRNFIRSNYRLIDAESHEIDKQGNSKYFLNNLVGIVENGLLVRAWGTQRDITERKQAEAALNQQEEQLRLITNAVPVQISYVDIQQLYRFNNKGYEDWFGLPASEIYGKHIREIMGESVYQSILPYVEAVLSGEEVTYETQLPHKDGTHHYINVSYVPQFSEQGKVEGFVALITDITLHKLAEAALKQSEKRLKTLTEKVRIIPWEVNATTGNFTYVGPQTVEILGYPLSDWYIDDFWQKHMHPEDREWAIQYCQESSLSLNNYEFEYRMLAADGRVVWLYDIINVVRDENGPQLLHGFMLDITDRKQAEQEREQLLEREKAARADAESANRMKDEFLATLSHELRTPLNAILGWTQLLRNRKFDEATTARALETIERNTKSLAQLIEDVLDVSRIIRGTLHLSIHRIKLVPLVEAAIDTVRPAAEAKEINIKCKFDPEVGIVVGDTNRLQQVVWNLLSNAVKFTSKGGSVDVQLERIESSVQIRVSDTGVGIAAEFLPHVFERFRQADSSSTRSHGGLGLGLAIVRHLVELHGGTVSVESLGVGQGATFIVNLPMKAVYVEANTAEQPSSLVDVPEANNYLPRLDDLRVLIVDDEADARHLLTTILGQYGAQVIAAASACEALLALQQFRPHILVSDIGMPQQDGYALIRQVRALPTDQGGRIPAVALTAYARAEDRTQALLAGFQLHVPKPVNPSELAVVVANLTGRT
>NC_010628.1|WP_167315645.1|4524219_4524360_+|hypothetical-protein
MAPFDFATSASLPRLRSAQVKASRSVTGEQGVGEQEETWFIHYGTG
>NC_010628.1|WP_012409958.1|4522281_4524147_-|tetratricopeptide-repeat-protein
MSDSLPLRDRYLALIDEIVETTLKGKISSVEMVYQMLLKGITSGTGEVFELVLSDRLNALQSQVDGEKDELKKAKATRSLRAIKTIQSQWQRWQEQNKTTEAIASAVTEITTAPADERLATFLRITDPNQKYPLNLQQLQQLSKALQQFAQADSDLEQFSEGITRGLASWQRLQDNLLSWMYEQKEALGFGGVPGERGPWASWAKQLNSELPKALLRTLAMEKSAIEFAQRQRGITLRDWVEMALILQFLQRGLINWFDQQAYDVKAGPKLSISTFLTFAVIWSQLASGFASIGTVYADACSQIMLQILRTFAQRPYFPFYGGIFASFTGTYLRDALDYLDEPLRRGEGTQEKARILTLLGYSQRALGQYQRSIDFHQQALEIARNAGDRACEIANLNHLSRTYVQQQNYAEAINYSQRALILSRQAGDAYGGQSQRTGEANALVNLGYSEVMQAQELENLEPETYEAAINYLEQGLKLSEKLGDIQSKALCVSSLGIAYLVIGEHQTAIKYLEDGFKTAQVSGDLYLQGRNLAYLAEAYYHLHNSEKTVYTGCLGMYLLEQIASNEWRQAAGLLTILQGQIGAEAFQSFLQQHRPKIIAVIGVDGYDYIPKLLEIYKQDM
>NC_010628.1|WP_012409957.1|4521345_4522008_-|class-I-SAM-dependent-methyltransferase
MTTQTLGLEQNLYDYLLSVSLREPEILTQLRHETAQHPVGRMQIAPEQGQFLALLVQLLGAKKTLEVGVFTGYSSLVVALALPSDGKVVACDVSEEFTTIARRYWQQAGVADKIQLHIAPALETLDRLLATGEAETFDFAFIDADKSNYDTYYERSLQLVRSGGLIAIDNVLWSGRVADPQVQDNRTKRIRAFNQKLHQDRRVSLSLVAIADGLTLALKK
>NC_010628.1|WP_012409967.1|4536798_4537974_+|FtsX-like-permease-family-protein
MIGFIQQLRRRTPLGWLQLSHEKGRLLVALSGIAFADVLMFMQLGFQTALFESNTILHRSMQADMFVISPQARNLANMSNFTRRRLYQAMDVPGVKSAEGMYVNIVDWKNPQTQQKTTILVMGFNPDRQVFNLADVNRQVDAVKLPDTVLFDRASRGDYNEAIAKIEQGKTVTTEIERRTITISGLFTVGASFIADGTLITSDQNFLRLFPRREASSVSLGLVQLQPGYDPKEMKAALESHLDDDVKVLTQAEFIEFEINYWKTNTAIGFIFSLGVAMGFMVGVIIVYQVLSTDVNSHIKEYATFKAMGYNNLYLLGVVLEEAIILAVLGFIPGAIAPLGLYHLTRNATNLPLYMTVARALTVLTLTMIMCVISGAIATRKLQSADPADMF
>NC_010628.1|WP_012409968.1|4538040_4538745_+|DevA-family-ABC-transporter-ATP-binding-protein
MSSQPVISVKNLDHYFGHGQLRKQVLFDINLDINAGEIIIMTGPSGSGKTTLLTLAGGLRSAQSGSLQILEQELCGAKTAQLTQVRRNNGYIFQAHNLHGSLTVLQNVRMGLEVHNNISPAEMKARSAQMLEEVGLGHRLNYYPDDLSGGQKQRVAIARALVGRPKIVLADEPTAALDSKSGRDVVNLMQKLAKEQYCTILLVTHDNRILDIADRIVYMEDGKLVNDRAVVEAS
>NC_010628.1|WP_012409969.1|4539175_4540357_+|CapA-family-protein
MANLSLGREFSFSFISICLYLGISIGVVIRLGQSQQLNAATTPTEPVSLPFTIAEPTSLTPKQQTSSDIITIKAVGDIIPGTNFPNYRLPRFQEQLLPKPVRSHLQGSDILFGNFESSLTNYPYTTKDTSRGQVFAFRSPPGYARLFAEAGFNVFNMANNHAMDFGSVGFKDTKKNLEAVGIATLGHKNQILYLKANNIPVAMVGFSPYEMYNSIHNLGAAQALIAKAKNKANIVIVSMHAGAEGTEALHVKNQTEFFYGENRGNSIQFARNMIDAGADLVLGHGPHVPRAMEIYKGKIIAYSLGNFLGYRTLSTNAQTGDSMILEVKLNSMGDLVSSKIIPVRMNRQGIPQIDRYFRTVKLMRDLNNQAFPKNPVKINKKGEVVVKKRKSGI
>NC_010628.1|WP_012409970.1|4540434_4542039_-|serine/threonine-protein-kinase
MLAGTILQDGKYTLIQEIGRGGFGITFKATHHYLGQEVVMKTINERLRQHPDFAKFERQFQDEARRLATCIHPNIVRVSDFFVEAGLPYMVMEYIRGETLGDAFVLPGITLPEATAIHYIRQIGAALQVVHNNGLLHRDVKPDNIILRQGTQEVVLIDFGIAREFNGGVRQTHTGLVSEGYSPIEQYLTQAPRTPATDVYGLAATLYALLTAQVPMPALLRDREQMPSPRELQPHLSAAVNQAIMRGMAVESRFRPATVAEWLQLLPGNEALMTPEALATYAVPTVNLSAKEAATLLGKTGRNRLHKPSVLAQPNQGISKGNPLAKKPGSSQILIGMGVALVAATAGFGITSILPKSQPQPTTKPLFEQPTQQPAAKVPSVENGAETNTTSRTESAPLSNSKQRRRNRRSSPEETPSSPTGDSQRGDLQQSAPSPSVSPTPSLVEKLRAIRSTRSASPAPLPQNNSPASNQNSASPQPIIPPNSVVIPAAPPTQSKQSDPSAVVVPTLEKQNSPTDNQPQSDRKLQEKLQDDNN
>NC_010628.1|WP_012409971.1|4542706_4544035_-|ATP-binding-protein
MAKLKISKKISTALINSLGAGVVPRVGVEYIAVGREKELKSLLQNLDDIAEGVAAFRFIIGNYGSGKSFLLQLIRNRAMEQGFVVADADLSSERRLAGSNNEGVATYRELMSHLATKTRPDGGALVSILEGWINKIQQEVVKETEMRPNDDGFDDQVESKIREVVQYIEGLVHGFDFGSVIIAYWRGYRMDDDNLKNAAMRWLRGEFTTKVEAKAALGVRVIIDDDSWYDYIKLFAKFVAEIGYKGLLILVDEAVHLYQISTTVTREKNYNRLLAMFNDTMQCKAEHLGIVVGGTTKFLEDPKRGLFADQAWQRRTKESRFVAQANVQENSGPVIRLNPLSEAEILTLLQRLAEIHALNFGYEQTLTNRELKEFVQEIINRLGAEALLTPGEIVRDFMSVLNILHQNPGIVFAELIHGSKFKPTAMGKNPNVDENGAAEFSL
>NC_010628.1|WP_041565500.1|4544131_4545421_-|hypothetical-protein
MQSVTISNRFILGIVAFSVSFGLSLVPSWDFNKAFLTGLITAATIYAAALFVDKRRRNYEMFVLGSLRKRIKEMEGLKARLVREINQIEEHHNLLYAESQQLQNQVTESRNQRDSLHRELRTFAGQKKQLETEINSLQTEINNLQKNQTELNNAFSILTAEKRRLESNCNVSRAEITQLQSQISELQQERQEVESNLTLLGRLKPQLEEKLYELRIAIQELEVETTQKNQLLVATKTERENIQAILHSSQTKLVEHKSELQQLQGQISLLQEERDSLQNQVWELLQQLETFNQEPLADSFQEDDTELFPFSEIMETTAVIGNSEIDTSENIPEEWTNFLENLPGYELQVLKAIVEQDNPKAAIKKIAEANITMPNLLIDSINERANDTIGELIINSDSESPEVYHEHITYVKKMIVMHESLMARHTSPN
>NC_010628.1|WP_012409973.1|4545722_4547078_-|ATP-binding-protein
MDNQAMPITSTSLYTKVQYLQRQADSLLLYQSVLQGEVGIAFLELLQAIRYTDSDARGCLQAYGRYFHALAAKNQNWEDYLITQLLFSKNPFTKLAEVKEFEELPPALVAAVQHDLQILQSLYECSSASLSEWIQNVAHMPISPVVWYKEQEFVGVETKFATYLQDLDNWGDAVKELAAYYRQCGSGLFAEYRALRWQAGQFIGIQYSDPVKLSALVGYESQRDALLKNTEFLLSGEMALHVLLYGSRGSGKSSLVKSLLNEYSERSLRLLEVTKSDLKDLPEIVEHLRGVSQKFIIFVDDLSFEEDDDAFKALKVVLEGNLTARPQNVVVYATSNRRHLIREFFVDRPTPKDTEEIHAWDTMQEKLSFSDRFGLTLTFEPADQKTYLKIVQHLAAQAEINITQENLEFQALQWATRHNGRSGRTARQFVDFLKADLRLFYANNNTSNTSD
>NC_010628.1|WP_193372244.1|4547165_4547486_+|hypothetical-protein
MNLSIIAAFAYGILAIAGGIIGYIQARSKVSLLSGSISGFLLILAAYFQLQGQTWGSILAVLVTAVLVVVFAVRLAKTRKFMPAGLMTILGMVALAVMVNQIVALR
>NC_010628.1|WP_041566272.1|4547879_4548761_-|fructosamine-kinase-family-protein
MWTQIDTHISQVTGEKFQSQQRRSVGGGCINQGYAVSNGEITYFVKLNLASQVAMFEAEALGLKEMLATASIRIPQPICWGVAENSSYIVLEWLELGNGNSNTSLRDAPRWEEMGRKLAAMHQASSSQGFGWKINNTIGSTPQINTWTADWTEFYIKHRLGYQFQLARRRGGSFPQQEKLLAAIRELLTHQVQPSLVHGDLWGGNAGCTASGEPVIFDPATYFGDREVDIAMTELFGGFPAAFYKGYNEVFPLDAGYEQRKTLYNLYHILNHFNLFGGGYASQANRMIDQILR
>NC_010628.1|WP_012409976.1|4549018_4550344_-|insulinase-family-protein
MTSTLRKFTRLHSPTLHQLPNGLTIIAEQMPVEAVNLNLWIKVGSAVESDAINGMAHFLEHMIFKGTERLASGEFERRIEERGAVTNAATSQDYTHYYITTAPKDFAHLAPLQIDVVSNASIPDDAFERERLVVLEEIRRSEDNPQRRTFRRAMETAYNELPYRRAVLGPESVIAELKPQQMRDFHHSWYQPQSITAVAVGNLPVEELIAIVAEGFTKANKTQHSRSATLTASPLSRDVINRVSTHSSLNPESPFTEIVRREFTDESLQQGRLVMVWRVPGMVQLDRTYGLDVLAGVLGHGRTSRLVRDLREERGLVSSISVSNMSNQLQGTFYISAKCAVENLAEVENAIAQHIRKVQTELVTESEIARVRRRVANRFIFGNETPSDRTGLYGYYHSLVGDLEPAFNYPDYIQSQDATDLMQAAKEYLSPDAYGVVVVKP

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Crispr_ID: NC_010628_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_20

4578003-4578241

Orphan

A:N

Consensus_repeat	Method
AATGTCGTTAATGTCAAAATTGCTAATCAATCTCAACAGATCAGCAATCAAGT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_010628_20

>merge|NC_010628|20|4578003-4578241|CRISPRCasFinder
TCTGTAGTTAATCTGAAACTCACTAATCAAGCTCAAGAGATTAAGGCTTCAGTCGTTCAGCAAATGCAAACAGAACTGGAGCAACGGATAGAAAATGTCGTTAATGTCAAAATTGCTAATCAATCTCAACAGATCAGCAATCAAGTCATTAACCAGATATCAAATGACATTGACCAGCGCATTGAGAATGTGGTTAATGTCAAAATTGCTAATCAATCTCAACAGATCAGCAATCAAGT

>NC_010628|20|20|4578003-4578241|CRISPRCasFinder
TCTGTAGTTAATCTGAAACTCACTAATCAAGCTCAAGAGATTAAGGCTTCAGT	CGTTCAGCAAATGCAAACAGAACTGGAGCAACGGATAGAA
AATGTCGTTAATGTCAAAATTGCTAATCAATCTCAACAGATCAGCAATCAAGT	CATTAACCAGATATCAAATGACATTGACCAGCGCATTGAG
AATGTGGTTAATGTCAAAATTGCTAATCAATCTCAACAGATCAGCAATCAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012409990.1\|4563364_4564702_-\|5-histidylcysteine-sulfoxide-synthase	unknown	unknown	gnl\|CDD\|275140
NC_010628.1\|WP_012409997.1\|4581961_4583353_-\|photosystem-II-reaction-center-protein-CP43	unknown	unknown	gnl\|CDD\|214343
NC_010628.1\|WP_012409989.1\|4562629_4563124_-\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|377265
NC_010628.1\|WP_012409994.1\|4574555_4575392_+\|SWIM-zinc-finger-family-protein	unknown	unknown	gnl\|CDD\|226729
NC_010628.1\|WP_012410004.1\|4590716_4591205_-\|hemerythrin-domain-containing-protein	unknown	unknown	gnl\|CDD\|213983
NC_010628.1\|WP_167315647.1\|4561072_4561228_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410002.1\|4588034_4589324_+\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NC_010628.1\|WP_012409992.1\|4567034_4569191_-\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NC_010628.1\|WP_012409996.1\|4581645_4581831_-\|PCP-reductase-family-protein	unknown	unknown	gnl\|CDD\|369836
NC_010628.1\|WP_012410005.1\|4591723_4592239_+\|DUF29-domain-containing-protein	unknown	unknown	gnl\|CDD\|366774
NC_010628.1\|WP_012409993.1\|4569292_4569838_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223532
NC_010628.1\|WP_167315646.1\|4560673_4560814_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012408090.1\|4572907_4573930_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NC_010628.1\|WP_012410003.1\|4589496_4590618_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_010628.1\|WP_012409998.1\|4583336_4584392_-\|photosystem-II-D2-protein-(photosystem-q(a)-protein)	unknown	unknown	gnl\|CDD\|176949
NC_010628.1\|WP_012409988.1\|4561449_4562289_+\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|377224
NC_010628.1\|WP_012410001.1\|4586747_4587896_+\|beta-ketoacyl-ACP-synthase	unknown	unknown	gnl\|CDD\|235653
NC_010628.1\|WP_012409991.1\|4565046_4566021_-\|L-histidine-N(alpha)-methyltransferase	unknown	unknown	gnl\|CDD\|274579
NC_010628.1\|WP_012409999.1\|4585073_4585643_+\|photosystem-I-assembly-protein-Ycf4	unknown	unknown	gnl\|CDD\|179441
NC_010628.1\|WP_012410000.1\|4585806_4586592_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238905

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012409990.1\|4563364_4564702_-\|5-histidylcysteine-sulfoxide-synthase	gnl\|CDD\|275140	TIGR04344, generic_methyltransferase, 5-histidylcysteine sulfoxide synthase. Ovothiol A is N1-methyl-4-mercaptohistidine. In the absence of S-adenosylmethione, a methyl donor, the intermediate produced is 4-mercaptohistidine. In both Erwinia tasmaniensis and Trypanosoma cruzi, a protein occurs with 5-histidylcysteine sulfoxide synthase activity, but these two enzymes and most homologs share an additional C-terminal methyltransferase domain. Thus OvoA may be a bifunctional enzyme with 5-histidylcysteine sulfoxide synthase and 4-mercaptohistidine N1-methyltranferase activity. This model describes the 5-histidylcysteine sulfoxide synthase domain, a homolog of the ergothioneine biosynthesis protein EgtB. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	0
NC_010628.1\|WP_012409997.1\|4581961_4583353_-\|photosystem-II-reaction-center-protein-CP43	gnl\|CDD\|214343	CHL00035, psbC, photosystem II 44 kDa protein.	0
NC_010628.1\|WP_012409989.1\|4562629_4563124_-\|DUF427-domain-containing-protein	gnl\|CDD\|377265	pfam04248, NTP_transf_9, Domain of unknown function (DUF427). This domain contains a beta-tent fold.	1.42167e-40
NC_010628.1\|WP_012409998.1\|4583336_4584392_-\|photosystem-II-D2-protein-(photosystem-q(a)-protein)	gnl\|CDD\|176949	CHL00004, psbD, photosystem II protein D2.	0
NC_010628.1\|WP_012410004.1\|4590716_4591205_-\|hemerythrin-domain-containing-protein	gnl\|CDD\|213983	cd12108, Hr-like, Hemerythrin-like domain. Hemerythrin (Hr) like domains have the same four alpha helix bundle and a similar, but slightly different active site structure than hemerythrin. They are non-heme diiron binding proteins mainly found in bacteria and eukaryotes. Like Hr, they may be involved in oxygen transport or like human FBXL5 (F-box and leucine-rich repeat protein 5), a member of this group, play a role in cellular iron homeostasis.	5.23468e-07
NC_010628.1\|WP_012410000.1\|4585806_4586592_+\|peptidylprolyl-isomerase	gnl\|CDD\|238905	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.	1.88464e-66
NC_010628.1\|WP_012410002.1\|4588034_4589324_+\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
NC_010628.1\|WP_012409992.1\|4567034_4569191_-\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NC_010628.1\|WP_012409996.1\|4581645_4581831_-\|PCP-reductase-family-protein	gnl\|CDD\|369836	pfam08369, PCP_red, Proto-chlorophyllide reductase 57 kD subunit. This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of Nitrogenase component 1 type Oxidoreductases (pfam00148) and sometimes independently in bacterial proteins such as the Proto-chlorophyllide reductase 57 kD subunit of the Cyanobacterium Synechocystis.	4.26582e-18
NC_010628.1\|WP_012409993.1\|4569292_4569838_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|223532	COG0456, RimI, Acetyltransferases [General function prediction only].	9.8307e-15
NC_010628.1\|WP_012408090.1\|4572907_4573930_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.52298e-17
NC_010628.1\|WP_012410003.1\|4589496_4590618_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.17022e-71
NC_010628.1\|WP_012409988.1\|4561449_4562289_+\|sterol-desaturase-family-protein	gnl\|CDD\|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	8.28479e-18
NC_010628.1\|WP_012410001.1\|4586747_4587896_+\|beta-ketoacyl-ACP-synthase	gnl\|CDD\|235653	PRK05952, PRK05952, beta-ketoacyl-ACP synthase.	0
NC_010628.1\|WP_012409999.1\|4585073_4585643_+\|photosystem-I-assembly-protein-Ycf4	gnl\|CDD\|179441	PRK02542, PRK02542, photosystem I assembly protein Ycf4; Provisional.	5.40338e-120
NC_010628.1\|WP_012409991.1\|4565046_4566021_-\|L-histidine-N(alpha)-methyltransferase	gnl\|CDD\|274579	TIGR03438, conserved_hypothetical_protein, dimethylhistidine N-methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	2.32397e-175
NC_010628.1\|WP_012409994.1\|4574555_4575392_+\|SWIM-zinc-finger-family-protein	gnl\|CDD\|226729	COG4279, COG4279, Uncharacterized conserved protein [Function unknown].	6.02462e-109
NC_010628.1\|WP_012410005.1\|4591723_4592239_+\|DUF29-domain-containing-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	8.36388e-60

>NC_010628.1|WP_012409994.1|4574555_4575392_+|SWIM-zinc-finger-family-protein
MTNYTLQASREWWSQQWLDLLDSYRFKKRLERARNYARQGNVLSIEFKGAKVLARVQGSEVEPYKVSLSLEPFTDEQWGYVIETMSQRAIFAAKLLAGEMPQNIEEVFTANGLSIFPFTLADVQSKCSCPDKANPCKHIGALYYQLGDRFSEDPFVLFQLRGRTKEQIISDLRQLRSTKIQPNTTETPDIQQSIPNNKYSVKIDSFWQYNEPLESSLVVIAPSTSEMVLDVLGAIPLAKEEENTVNSTSSDLVMKYLNTVYRDVSQKAFLAAMNVGES
>NC_010628.1|WP_012408090.1|4572907_4573930_+|IS4-family-transposase
MIINSFPKIVKDILRGLPKNDYPVLNSRLFFECWLSYAMDNSLTSMRDLFNRLNNTGFPVDISTFSKANLHRSQKPFQEIYQKLNELVQKKVQKKLHDKYAICPIDSTIITLTSKLLWVLGHHQVKLFSSLNLATGSPSDNFINFGHDHDYKFGCKMMSSLPNNAVGVMDRGFAGLKFIQELVQENKYFVLRVKNNWKLEFEEQTGLIKVGASNDAQAYRVINFCDLETKTEFRLVTNLPTLGEAAVSDYEIRDIYRLRWGVELLWKFLKMHLKLDKLITKNVNGITIQIYVTLIAYLILQILSVPQQWGHTLLDKFRYLQSCMCQKISYVHWFEEMMSC
>NC_010628.1|WP_012409993.1|4569292_4569838_-|GNAT-family-N-acetyltransferase
MDLPLVQVIKNNITVELDYIHPQEQEVVRTLLNVVIVEGKTYPQRQPLSQAEFSTYWLSKDAFVVRTSGKDTTHKPKEILGAFYLKPNFPGQCCHICNAGFIVQPELRGQGIGRFMGEAMLLIAADLGYEAVMFNLVFETNIPSITLWQSLGFEIIGRIPRAAKLGDEQVVDALMMYRPLG
>NC_010628.1|WP_012409992.1|4567034_4569191_-|polyribonucleotide-nucleotidyltransferase
MAEVDKSISFDGRDIRLKVGLLAPQAGGSVLIESGDTSVLVTATRSQAREGIDFLPLTVDYEERLYAAGRIPGGIMRREGRPPEKTILTSRLIDRPMRPLFPSWLRDDLQIIALTLSMDELVPPDVLAVTGASIATLIAQIPFNGPMAAVRVGLVGDDFIINPTYAEIEAGDLDLVVAGSPHGVIMVEAGANQLPERDIIEAIDFGYEAVRDLIKAQQDLVAELGLVIVQEAPPEVDQTLENYIRDRASGQIKKILSQFTFTKPERDAALDVVKDEIATTIKELPEEDPIRVAATANNKALGNTFKDITKYFMRRQIIEDNVRVDGRKLDEVRRVSCLVGVLPKRVHGSGLFNRELTQVLSTCTLGTPGDAQNLNDDMQLDQHKRYLHHYNFPPFSVGETKPMRSPGRREIGHGALAERSLIPVLPSKEQFPYVIRIVSEVLSSNGSTSMGSVCGSTLALMDAGVPILKPVSGAAMGLIKDGDEVRILTDIQGIEDFLGDMDFKVAGTDTGITALQMDMKIPGLSLDVISQAVHQAKAARLHILEKMLACIDTPRIETSPYAPRLLTIKIDSDMIGLVIGPGGKTIKGITEETGAKIDIEDDGTVTISAVDENKAKRARNIIQGMTRKLHEGDVYAGRITRIIPIGAFVEFLPGKEGMIHISQLADYRVGKVEDEVAVGDEVIIKVREIDNKGRINLTRLGIHPDQAAAAREAAAVNR
>NC_010628.1|WP_012409991.1|4565046_4566021_-|L-histidine-N(alpha)-methyltransferase
MLATYLKSLNENDRSLYNEGEDVIQGLIQSPKTLPPKYFYDDYGSELFEQICELSEYYPTRTEAWILRQYADEIAQITGNCELVELGSGSSTKTLFLLDAYQKIASHCRYIPIDVSHGILKSSVLKLQQKYPNFFVEGLIGTYEQALIKLESTFAASRMIFFLGSSLGNFNPRECDDFLRQITRTLQAGDYFLLGIDLQKPKEILEPAYNDSQGVTAAFNLNILSHLNWRFQGNFDLSLFTHQAIYNENDAQIEMYLHCQKSHEVSLEALDLQVSFAGGESILTEISRKFDLVNMQKQLETHGLKTLKTWTDPNQWFGLILCQA
>NC_010628.1|WP_012409990.1|4563364_4564702_-|5-histidylcysteine-sulfoxide-synthase
MNSLQSTHPPKLNSCDRQVILDYFENAWQLEDMLMKTLVEEDTFYLNPDPLRNPLIFYLGHSAVFYINKLISVGLLEKRINPDYEILFEIGVDPEVPEELNQAIAHLEWPQVAQTWEYRKQAYTVIAEVIKTTPITLPIHPTHPLWALMMGIEHQRIHIETSSMLIRQLPIERVKRPQNWQYAPFNGYTAQNEMIQVIGGVVKLGKAFNDPTYGWDIDYGDRTVEVEPFLASKYLITNADFSYFVKAGGYENQAYWDEESWHWKTENNIQYPKFWIHQNGIYKYRAMFDEIDLPLDWPVEVNHYEAMAYCCWQGKDTRLMSEAEYHLATYGSGLVEDVDNYNVNLKFGSPSPVGMLETAKSYSGLYDLRGNVWEHLSDNLNPLPGYKPHFLYEDNSAIFFDNKHQMMLGGCWITNGTEALKYYRNWFRPNFYQHAGFRIVQDMKH
>NC_010628.1|WP_012409989.1|4562629_4563124_-|DUF427-domain-containing-protein
MRPNPIPPQPGQESVWDYPRPARLEDTKKSIRIIVNNIVLAETSKAKRVIETSHPPSYYIPSEDIKLEYLIETPKKTWCEWKGKCQYYDISIGDKYINNAAWRYFDPTSDFVTIQEYYAFYPSLMDACYVNDELVMSQPGDFYGGWITSDIVGPFKGSPGTMGW
>NC_010628.1|WP_012409988.1|4561449_4562289_+|sterol-desaturase-family-protein
MRKFFNFCFEVEFYLKIAITCTIVQQIFYWLLHNIELNFITQVLLYWLVGSISFYSIGLFIEKVIKNNDNLREKLTARVKKVKTQPFPSFTAKGIITGEIKSFIAALIILYLAPEVNRGNSLLSNLGWFLMRIIVADFCFYVSHSLLHRKFLQKIHLKHHEFADSSSFVAGHKSLTEYIIVTITDLLPIFIFGYDITQLCAWTIIGNAYNLEGHSSLSIFFVPSDFHDLHHSCFKRNYGIQGFWDRLFNTLNPPTKKPGIMFPVAYLEHITMKLSNPLN
>NC_010628.1|WP_167315647.1|4561072_4561228_-|hypothetical-protein
MMCSGLPQCTRQSDLQVFISKGSHEALTVGDRKNFQSTNICNYFIAIYLVT
>NC_010628.1|WP_167315646.1|4560673_4560814_-|hypothetical-protein
MPTYFVQLSQLKILNSEGADWMQQNQHSLCDRILYGCKETLFNQLI
>NC_010628.1|WP_012409996.1|4581645_4581831_-|PCP-reductase-family-protein
MSDSNFIDALRWTPEAKEKLQNIPFFVRSQAKARIEQLAREAGQEIVTGDLVEQARLEFGQ
>NC_010628.1|WP_012409997.1|4581961_4583353_-|photosystem-II-reaction-center-protein-CP43
MVTLSNRPNILGGTGRDQESTGFAWWSGNARLINLSGKLLGAHVAHAGLIVFWAGAMTLFEVAHFVPEKPMYEQGLILLPHLATQGWGVGAGGEVIDTFPYFVVGVLHLISSAVLGFGGIYHAVRGPETLEEYSSFFGYDWKDKNKMTNIIGFHLIILGFGALLLVAKAMFFGGLYDTWAPGGGDVRIITNPTLNPAVIFGYVIKSPFGGEGWIVSVDNLEDVVGGHIWIAFICIAGGIFHILTKPFAWSRRASIWSGEAYLSYSLGALSLMGFIASIFVWFNNTVYPSEFFGPTGPEASQAQALTFLIRDQRLGANVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLEKIKNDIQPWQARRAAEYMTHAPLGSLNSVGGVATEINSFNYVSPRAWLATSHFVLGFFFLVGHLWHAGRARAAAGGFEKGINRDTEPVMFMDDLD
>NC_010628.1|WP_012409998.1|4583336_4584392_-|photosystem-II-D2-protein-(photosystem-q(a)-protein)
MTIAVGRAPSRGWFDVLDDWLKRDRFVFVGWSGILLFPCAFLALGGWLTGTTFVTSWYTHGLASSYLEGANFLTVAVSTPADSMGHSLLLLWGPEAQGDLTRWFQLGGLWPFVALHGAFGLIGFMLRQFEIARLVGIRPYNALAFSAPIAVFVSVFLMYPLGQSSWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAVGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAPQDQPHEQFVFPEEVLPRGNAL
>NC_010628.1|WP_012409999.1|4585073_4585643_+|photosystem-I-assembly-protein-Ycf4
MTTSTTINKGDRLLHQNVLGSRRFSNYWWATIVTLGASGFLLAGISSYLKVNLLIVSDPTQLVFVPQGLVMGLYGAAGLLLATYLWLVILLDVGGGYNEFNQETGTIKIFRWGFPGKNRRIEIDSRIEDVQSVRIAVKEGLNPIRALYLRIKGRRDIPLTRVGQPLSLTELETEGAKLARFLGVSLEGL
>NC_010628.1|WP_012410000.1|4585806_4586592_+|peptidylprolyl-isomerase
MRLKISQFLLSLVLISAVMLGGCSTQQVASNTSSPTSTATSTTQTTTQATSVSQTSSESIPGITGLPRLEGKATVVMTVKGSPITIEVDGTDAPITAGNFVDLVQKGVYDGLAFHRVVREPQPFVVQGGDPQSKDPKVPADQLGTGSYIDPKTGNARYIPLEVKPKGSDTPLYNKPFDATAQPVILPHKQGAVAMARSQAPDSASAQFYFALADLAFLDGNYAVFGNVTQGLDVVNKIQQGDRIDSAKVTQGAENLKTAGQ
>NC_010628.1|WP_012410001.1|4586747_4587896_+|beta-ketoacyl-ACP-synthase
MKVLVTGIGLVSALGGSLEDSWKNLIAGKSGIRLHQPFPEIKPLPLGLIAQQPSELAMLTQMVVTSALQDAGLVPPLADCAVVIGSSRSYQASWEMLARQMYKDTKNLPVSNFGNWLDILPHINAIATARQIGATGMVLAPMAACATGIWSIAQAALLIQTGQCQQAIAGAVEAPITPLTLAGFQQMGALAKTGAYPFDLQREGLVLGEGAAVFVLESAELAKQRQAKVYGEILGFGLTNDAYHSNSPEPEGKSAIAAIKQCLERSCLSPADIDYIHAHGTATQLNDQMESMVIQRLFPQGVAVSSTKGSTGHTLGASGALGVAFSLMALKHQILPPCVGLQQPEFDLEIVTAARLSKIRQVLCLSFGFGGQNVAIALAKSP
>NC_010628.1|WP_012410002.1|4588034_4589324_+|Glu/Leu/Phe/Val-dehydrogenase
MISKSLLPLEPASPAHICPFDQACSYLEAAAKELNLNQGLLEILSHPRKVVTVSIPVKLDDGEIQVLAGHRVQHSDVLGPYKGGIRYHPAVTLREVSALAMLMTWKCALLGIPYGGGKGGIPIDPKRYSVGELERISRRYISELLKDIGPSVDIPAPDMGTSAREMAWMMDTYSVNVGHAVPGVVTGKPLSIGGSLGREMATGRGTMIIVREALADRGKSLVGVRVAIQGFGNVGGAAAELLHQAGAKIIAVSTGAGGIFSEAGLDIPALKIYAAENRKSIVGFPQSVPISNADLLTLPCDVLIPAALENQITGENVNQVQAQIVAEAANGPVTLEANLALEARGVTVLPDILANAGGVVVSYLEWVQGLSYVFWDEERVNREMEHLMVQAYRKVIQQSNKRQISLRLAAYTLGVGRVAQALTDRGLYP
>NC_010628.1|WP_012410003.1|4589496_4590618_-|Gfo/Idh/MocA-family-oxidoreductase
MTATNGKRKIRYAVVGLGWFAQEAALPSFVHAKNSELVALVSDDPIKSEELSKKYGIEHTYSYEEYEDCLASGEIDAVYIALPNHLHCDYTVRAANQAIHVLCEKPMAVTEEECEAMIKAANDNNVKLMIAYRLHLEEANLQAVEIIRSKQIGEPRVFNSVFSQQVEEGNIRLRNVTGGGTLYDIGIYCINAVRYLFQDEPIEVFAVAANKGEQRFSEVEEMTSVTLRFPNERLATFTCSFGGANVSTYQVVGTKGDLRVEPAYPWQGEIKHYLTINGETQERTFEDHDQLAAEFTYFSDCIVQDKDPEPSGTEGLIDVSIIQALYQSIEMGKPVQIQTRARHQRPTSTQAIELPPAEKKPDLIHAASPSGES
>NC_010628.1|WP_012410004.1|4590716_4591205_-|hemerythrin-domain-containing-protein
MARTKANKDKATGILALIEAEHRQVEKLFTEVEKAKGAKLVEQFNQIYVALILHARTEELVFYPALREYEETEQYVEEAEEEHEEVSVILEEIKAFKPTDPEFKEKMSELKETFEHHAEEEESEIFNAVRECMSDKELTELGQEFQETKAKLVSNVEAALAM
>NC_010628.1|WP_012410005.1|4591723_4592239_+|DUF29-domain-containing-protein
MVKPIIQSATQTLYNEDYYLWLRTTINQLRAGQFSAVDLDNLLEELETMGRREKRAIESLLIKLLQYLLKLKCWDEERERNLGHWKGEIRTFRREIKKALKDSLSLKPYILEIFDECYQDARKEASDAYGGKLRSKLLLDIFLSIPISSLEQILDENWFPEYNHNHYGKPD

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Crispr_ID: NC_010628_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_21

4719432-4719692

Orphan

A:N

Consensus_repeat	Method
AGACGCAATAGCATCATACGATAAAGCGATCGCCATCAAACCCAACAAATATCAAGC	PILER-CR

2 spacers

The CRISPR arrays of NC_010628_21

>merge|NC_010628|21|4719432-4719692|PILER-CR
AGATGCAATAAAGGCATACGATAAAGCGATCGCCATCAAAGTTGAGAGTCCTGAAGCTTGGATTAACCGTGGCATAGCTTTAACATCGTTGCAACGTTACCAAGATGCTCTTGCATCCTATGATAAAGCGATCGCGATCAAACCCGATAAATATGAAGCCTGGTATAATCGTGGCATAGCTTTGACATCGTTGCAGCGCTACAAAGACGCGATCGCATCTTACGATAAAGCGATCGCCATTCAACCCAACAAATATCAAGC

>NC_010628|21|6|4719432-4719692|PILER-CR
AGATGCAATAAAGGCATACGATAAAGCGATCGCCATCAAAGTTGAGAGTCCTGAAGC	TTGGATTAACCGTGGCATAGCTTTAACATCGTTGCAACGTTACCAAGATGCTCTTGCATCCTATGATAAAGC
GATCGCGATCAAACCCGATAAATATGAAGCCTGGTATAATCGTGGCATAGCTTTGAC	ATCGTTGCAGCGCTACAAAGACGCGATCGCATCTTACGATAAAGC
GATCGCCATTCAACCCAACAAATATCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012410116.1\|4735258_4735645_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410096.1\|4704237_4704957_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410097.1\|4705361_4707293_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320699
NC_010628.1\|WP_012410104.1\|4715869_4716628_+\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NC_010628.1\|WP_012410115.1\|4733890_4735219_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223834
NC_010628.1\|WP_012410105.1\|4716732_4718427_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
NC_010628.1\|WP_012410107.1\|4720044_4720917_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224016
NC_010628.1\|WP_012410110.1\|4725968_4728908_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NC_010628.1\|WP_012410103.1\|4714390_4715767_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_010628.1\|WP_041566286.1\|4729594_4730731_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NC_010628.1\|WP_012410101.1\|4710117_4712331_-\|transketolase	unknown	unknown	gnl\|CDD\|226466
NC_010628.1\|WP_012410100.1\|4708438_4709032_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|226983
NC_010628.1\|WP_012410102.1\|4712520_4713903_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NC_010628.1\|WP_012410099.1\|4708159_4708411_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410109.1\|4723921_4725445_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379533
NC_010628.1\|WP_012410111.1\|4729079_4729469_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NC_010628.1\|WP_012410114.1\|4731759_4733526_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NC_010628.1\|WP_012410113.1\|4731073_4731571_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_010628.1\|WP_012410098.1\|4707299_4707887_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NC_010628.1\|WP_012410108.1\|4722081_4722645_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012410101.1\|4710117_4712331_-\|transketolase	gnl\|CDD\|226466	COG3957, COG3957, Phosphoketolase [Carbohydrate transport and metabolism].	0
NC_010628.1\|WP_012410097.1\|4705361_4707293_-\|M48-family-metallopeptidase	gnl\|CDD\|320699	cd07340, M48B_Htpx_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This HtpX family of peptidase M48 subfamily B includes uncharacterized HtpX homologs and consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and collaborating with FtsH, a membrane-bound and ATP-dependent protease, to eliminate them. HtpX, a zinc metalloprotease with an active site motif HEXXH, has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not.	1.95507e-90
NC_010628.1\|WP_012410104.1\|4715869_4716628_+\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	2.14446e-23
NC_010628.1\|WP_012410115.1\|4733890_4735219_+\|hypothetical-protein	gnl\|CDD\|223834	COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane].	1.83859e-11
NC_010628.1\|WP_012410105.1\|4716732_4718427_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	4.91178e-139
NC_010628.1\|WP_012410107.1\|4720044_4720917_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224016	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane].	9.64349e-77
NC_010628.1\|WP_012410103.1\|4714390_4715767_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	5.2889e-95
NC_010628.1\|WP_041566286.1\|4729594_4730731_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NC_010628.1\|WP_012410100.1\|4708438_4709032_-\|Uma2-family-endonuclease	gnl\|CDD\|226983	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only].	2.69035e-19
NC_010628.1\|WP_012410102.1\|4712520_4713903_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	4.21465e-102
NC_010628.1\|WP_012410098.1\|4707299_4707887_-\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	1.20034e-73
NC_010628.1\|WP_012410109.1\|4723921_4725445_-\|hypothetical-protein	gnl\|CDD\|379533	pfam14277, DUF4364, Domain of unknown function (DUF4364). This family of proteins is found in bacteria and archaea. Proteins in this family are approximately 180 amino acids in length.	0.000150246
NC_010628.1\|WP_012410111.1\|4729079_4729469_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.99328e-65
NC_010628.1\|WP_012410114.1\|4731759_4733526_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	7.09144e-16
NC_010628.1\|WP_012410113.1\|4731073_4731571_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.11536e-13
NC_010628.1\|WP_012410110.1\|4725968_4728908_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NC_010628.1\|WP_012410108.1\|4722081_4722645_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.88606e-37

>NC_010628.1|WP_012410105.1|4716732_4718427_+|NAD(P)/FAD-dependent-oxidoreductase
MQEYDVVLIGAGHNGLVCAAYLLKAGYSVLLLEKRSVPGGAATTEECLPQEAPGFKFNLCAIDHEFIHLGPVVEELELEKYGLHYLECDPVVFCPHPDGKYFLGHKSLEKTCAEIARYNERDAKKYAEFVDYWQRAIGAMIPMFNAPPKSIIDIVGNYDIKKFKDLFSVIGSPNKTLDFIRTMLTSAEDLLNEWFDEEFLKAPLARLASELGAPPSQKTLAIGAIMMAMRHNPGMARPRGGTGALVQALVNLVTSKGGVILTDQHVEKVLIDDGKAVGVRVAGGKEYRAKYGVISNIDAKRLFLQMTDKSDVDGADPDLWERLERRIVNNNETILKIDLALDEPLHFPHHAHKDEYLVGSILIADSVAHVEQAHSKCTLGEIPDADPSMYVVMPSYLDPTLAPPGKHTVWIEYFAPYQIAGAEGTGLKGTGWTDELKNKVADRVVDKLADYAPNVKNATIARRVESPAELGERLGAYKGNYYHVDMTLDQMIFFRPLPEIANYKTPIDNLFLTGAGTHPGGSISGMPGRNCARAFLQAKHPISQTLKDARDSIKSTVESVFGIN
>NC_010628.1|WP_012410104.1|4715869_4716628_+|DUF2993-domain-containing-protein
MPDEHRLEEKFLSQEAERRVSEKLDEVEKIEIDVQTDLFKIVQGQADGVSVAGQGLTIEKDIRVQEIKLQTESITINPLSALFGQIELNDPVNAIARIILTEVDMNRTLASDFVRSKMQDFDLDVDGRIVSFEAQKIEIFLPGDGKIECRGRVLLKEKGNTRPLAYTAIARPRTHSQPAMLESFNCTEGGGISIEVVTALMQKAKELMNIPYFKWKDMVFHIKDIKVETGSLILMVETQVRQIPSSSNFSST
>NC_010628.1|WP_012410103.1|4714390_4715767_+|cytochrome-P450
MKILDSLTTPSLLQTLQLIAKPTKTLENYATKYGDIFTMRVMGLKSPPIVFFSHPQAISDCFAVPAHKLDFKKATHVFKPLFGENSIVFKEARSHQQQRQLLLPAFHGDNLKSYGQAICQIAEELTQSWTSGTNICIHKLMSKITLEIILQVVFGITHGVRYQQLKEQLSALLEDVTKPWYSSLFFFPSLQKDLGAWSPWGIFLKRREQIDKLIYAEISERRWQNDAMRTDILSLLMSAHDVNGQQMTDEELRDQLVSLLLLGYETTSGVLAWIFYLIHSHPEVKHRLMQELSTLDNLTNPEAITQLPYLTAVCQETLRIHPIALICTPRMLKEPVEIMGHKFTSETVLVPCIHLAHRRTDTYPEPEQFRPERFLNQKFSPYEYLPFGGGYRGCIGAAFSMYELKLVTAIILSRFELSLTDKRPAYPVRRGITIVPSGGVKMVVTKKAKFKRQTILST
>NC_010628.1|WP_012410102.1|4712520_4713903_+|cytochrome-P450
MKLPKGPQSPAVLQMLRWITSPMSFMETCAKRYGDMFTIRLDSKSPPLIFVSKPEVLEQILTNDIKGLEAPGDTNLVFESLLGKHSVITISGAEHQRQRQLLLPPFHGERMRSYSQIISDITEKVISQYQIGQPFNIRSVTQAITLRVIMQAVFGLDEGPRAEKLQHCLAEMLEKGSSVLSAALLYFPALQRDFGPINFWGKQMRRQQAADKLIYEEIRERQEQPDPSRTDILSLLMAARDEAGQPMTDEKLRDELMTLLVAGHETTATALAWAFYWIQKIPTVRQKLLKELDSLGDNPDPSTIFKLPYLNAVCSETLRIYPVAMLTFARVVRTPLSLGGYELEPGIGVIGSIYLTHHREDLYPEPKQFKPERFLERQFSPYEYLPFGGGARRCIGLAFAQLEMKLALAKILSTRELELVDNSEVRPKRRGLVTGQDRPIQMVVTSQRQVKFPILQTATV
>NC_010628.1|WP_012410101.1|4710117_4712331_-|transketolase
MTAISPKASSALPNFSEGIQYFGEALPDFETYGATPAIESGKIAIASPTDKAAVYQTLLAADALRYLTLQVTASKASGHPGGFASQAEAYASLVMLGYKNIITEVGHHAPGFYSAMFLDRSLEDMGIFTVQELRDRFREKHGLLGHLSGFIPGILAPAGPLGQGQHFAMAAALLHKDKLFPFTVGDGGLGEPYIVSAIAHFHTAYPAVTNFLPVLVWNGYSQEHHSMVSLKTNEQMQAYWQGNGFDEVVLVDAKDFDDRDQPGDYVDSTAFSFEKRLAFTQAVLSGVDKAARSALGGKLTVFIIKQLKGAGVHARGAKSHNLYPKDTLDAPHIISALQTRALSAEAWQLVRTNAERAGGGPAAKTVVTEFELPLPELGELPLEEYAVGGEAKVSTTAMGRLVGIVGNKDRNFLVTNADGNEASGIANINQALKIIHPTTDDLYNQAPNGQVYEPLSEDACAGLAAGLALMGARTLWCSYESFAINGLPIWQTVTQSMAELRRQTPSTITLFTAGALEQGRNGWTHQRPEIEAYFASLMRNGNVFPLFPPDANSIQACYEWALKTKNKGIVITASKSPLPIRTTLEQTRQGLRDGAVLLHEIAGDKQVVFTVIGDMTLMPVFEAAAFLETEGIGAKIISVINPRQLYRPHDTAWDTCSEPEGGFLDDAKFAELFDGDALIAVTGGAAGMLEPILLRSTAKRDTFAWKRGETTASAGELMAFNGLTAEALTKRASALVH
>NC_010628.1|WP_012410100.1|4708438_4709032_-|Uma2-family-endonuclease
MTPQTIDQITTLEEQRFLLPGHYTWEEFEKLEALTADAPGLRITYLDGCVEFMTLGEQHEAIKSVIAIFLALYFFEKGINFIPVGSATRRAKEKGASFEPDESYYLGEKKENPDLAIEVNITSGSIDKLEKYKRFNITEVWFWENNQISVYHLTNNNYEQISQSQLLPDLDISLLVCCVLMPSIIEARTEFIKGIRQ
>NC_010628.1|WP_012410099.1|4708159_4708411_-|hypothetical-protein
MTDRTDLSKMIANKAENPLIISPENLQSQEDIELERKLRELKFKQELRKDWILFIVRDVVIFPAAILFIFAASGYSLFLHIHG
>NC_010628.1|WP_012410098.1|4707299_4707887_-|LemA-family-protein
MGLLIFSVALVAIVALIIINAYNDLVKYRNRYKNAYSQIDVQLQRRYDLIPNLVETAKGYMKHERETLEAVIAARNSAINASSRAAQNPGDPQAMQQLGNAEGALTGALSRLMVLSESYPELKADRSMTQVMEELSSTENRIAFARQAFNDAVTLYNTKSESFPSNLVANTFNFTVAELLAEATPEMRNAPRVSF
>NC_010628.1|WP_012410097.1|4705361_4707293_-|M48-family-metallopeptidase
MNFFEHQDRARQNTQQLIGLFSLSIAVMIMAIYIAALFLFRMAPRVWWHPGIFLYVAGITIIAIAVGSLYKIACLRQGGSVIAQELGGRLLLPDMADEQGRQLLNIVEEMAIASGISVPEVYLLERETSINAFAAGFTPNDAVIGVTRGTLQHLNRDELQGVIGHEFSHILNGDMRLNLRLVGLLHGILFIYLTGELLWRIRDSFRLGKEDKGLPIWAFGLALMAIGGIGLLCGRLIKAAVSRQREFLADASAVQFTRNPNGLNGVFQKLQQMDSRLISPGAEAASHMFFGNALNPSFWDNMFSTHPPLAERIRRIGGLNVSNLAAMPSRNQMRSPSQESLTMGFAGSSNAMPEQVVNQVGSVTPEHFAHAQALLSQLPESLHLGVREQKSAMAIAFALALDTENIEIQERQIAWLREVQPAELVDKTLELSSEISQLDAKIRLPLVDLAVPVLRQNSAKECQRLCKCVHGLAVATGSLSLWHFVLQLILWHRLQPSINPASTTTVEYTSIEQIWPDSLLVLSVIARVGHSQPDASTKDIAYAFRSGVFRLPKAAEQEKPDTPPSCNFTELKKSIERLRLASPKLKQAIVDACAHTVLLDNKVTQSEADLLRAIAMTLDCPIPPFLNPQRGISKQRQSSSKGS
>NC_010628.1|WP_012410096.1|4704237_4704957_-|hypothetical-protein
MRDDLQGLEISQGELQKLTNLPVHDQLLIITNPLKNFTKLYIQKIKSSEGATVIFIGFATFVFGYLLFDIFIKIFVSWIAIPSWMVLIILGLWVGGLTQTILYLIWKKRSKIVKLNMTNSLQILLNDVERYNTVIRAIHINDQIEEAGNPEVLIKERESVLAALNLTKADLVRALKTERILRENKSFILSNTELFVNNLATLTAMQVNEQATEHGRLLNEALQIALDVQHEMKRLQTQG
>NC_010628.1|WP_012410107.1|4720044_4720917_+|NAD(P)-dependent-oxidoreductase
MKKLLITGASGFLGWHLCQLAKPEWEIYGTYLSHPLEIPGIKTLKANLTNFQELKRIFNDVKPEAVIHTAAHSQPNFCQTNPKESHAINVIASCNIAGLCADNSIPCAFTSTDLVFDGLNAPYQEIDAVCPVNLYGEQKAIAEAGMLERYPLTAVCRMPLMFGAATPTAKSFIQPFIQTLQAEKELNLFIDEFRTPVSGTTAAKGLLLALEKVNGIIHLGGKERLSRYDFGKILVEVFQLPTTKLKSCRQEDVKMAAPRPADVSLDSSKAFALGYQPLSLKEELQNLINS
>NC_010628.1|WP_012410108.1|4722081_4722645_+|Uma2-family-endonuclease
MTVQLLRRKFTVEQFHKMIESGILSEDDRVELIRGEIIEMSPIGTKHAACVNRLINLLMQLLGKRVILAAQNPIALNNNSEPQPDVALLKPRDDFYETAHPQPQDIFLLIEVADSTVMYDREEKIPLYAQANIIEVWLVDINEQIVEVYQQPTAARYQFMQKFASGQTLSIPAFLDVNITVKEIFGR
>NC_010628.1|WP_012410109.1|4723921_4725445_-|hypothetical-protein
MNIDPVVNALKSIAKPEASLVINQAQRNETVVRTLKQFNFDPVQPPKDVDGVYVYSLIEYGVDKQEVLLNLFREREIKNAFWSAYTSNNPLGFYKKVEKFLQGTDSEYDIRLMKIELRSQLEEFGEIFIQVAKRSKSIEFEPFPEWNLDEYPTEFKSLIREKIRSFCGRQFVFDAFKQFCNKNRSGYFTVAGDAGMGKSTIAAKYVWDNKSPCYFNIRQTSSNRAELFLESIRKQLSKRYQLQNVEKANLADLLEQVSKRIPVSESLVIVVDALDEVEQEAGGNLLDLPTALPERVYFLLTRRPYTIDKKRLSAPDVPMEELDLRANDYVNLSREDIKKYIGLFLNVDEDHKKALRQWIKDRNIDDNDFVEQVATKSENNFMYLRYVLPGIAKGDYQDLNLTQLPDGLQDYYQVHWVRMRMDVKPQEVKVFILFILVEIGTPITWKMIADIAKQEEYDVQLVLDEWVEYLKEQTIDGDNCYSIYHASFLDFLKSKPVLNTKRKLLKK
>NC_010628.1|WP_012410110.1|4725968_4728908_-|aminomethyl-transferring-glycine-dehydrogenase
MVLNAPILKSNEQQVLNQKSQKLSSFAPRHIGPNSDDIQQMLKVLGFPSLDALIDKTVPQTIRLKQPLKLPEAESEYAALASLKKIAAKNQVFRSYIGMGYYDTITPLVIGRNILENPGWYTAYTPYQPEIAQGRLEALLNFQTLIIDLTGLEIANASLLDEATAAAEAMSLSYGVSKNQANAYFVSHDCHPQTIDVLQTRAKPLGINIIVGDHQTFDFDRAIFGAVLQYPASDGTIYDYRAFIEKAHAKGALVTVAADPLSLTLLTPPGEFGADIAVGSTQRFGIPLGFGGPHAAYFATKEEYKRLVPGRIVGVSKDAQGKPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPDGLKQIAENIHQLTLMLAAGLKHLGYKISSEHFFDTLRVELGTRSLEVILEACQARNINLRIFDDTAVGISVDETTTADDLIELFEIFAAPDSLLFGFKEIGDLIAARRKSSLQNSTFARTSNYLTHPVFNRYHSETELLRYLHKLESKDLSLTTSMIPLGSCTMKLNATAEMIPVTWEEFGKIHPFAPASQTQGYQILFQQLEAWLAEITGFAGISLQPNAGSQGEYAGLLVIRQYHENRGEAHRNVCLIPTSAHGTNPASAVMCGMKVVAVACDSQGNIDVDDLKAKAEKHSHELAALMVTYPSTHGVFEEPIQEICAVVHSHGGQVYMDGANMNAQVGICRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVASHLVPFLPGHPVVTINDSTQHSHIGAVAAAPWGSASILVISWMYIAMMGADGLTQATKVAILNANYIAKKLESYYPVLYQGKNGLVAHECILDLRSLKKSAAIEIDDVAKRLMDYGFHAPTVSWPVGGTIMVEPTESESKQELDRFCDALIAIRQEIAEIEVGKVDAQDNVLKNAPHTAESLITGEWQHPYSREQAAYPAPWTREYKFWPAVGRIDAAFGDRNFVCSCLPMDAYSS
>NC_010628.1|WP_012410111.1|4729079_4729469_-|glycine-cleavage-system-protein-GcvH
MSFEYPQDFRYLDSHEYVRIDGEIATIGITEFAVHELGDIVFLELPEIGDALTRGENFGTIESVKAVEELNSPVTGTVIERNEALINSPEEVSEDPYGEGWFLKVRVNDPGEIEDALTADEYRAQVEGE
>NC_010628.1|WP_041566286.1|4729594_4730731_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MANQEDNTQSLARTPLYQVGVELKARFTSFGGWEMPVQFSGISREHEAVRNAAGMFDISHMGKFTLQGKNLISQLQSLVPSDLSRLQPGQAQYTVLLNHQAGIIDDIIVYYQGEDTTGIQKAFIIVNAATSGKDKAWILQHLDLDKVQFQDLSPDKVLIAVQGTKAIKYLQPLVQEDLQPIKAFGHLEATLLGKPAFLARTGYTGEDGFEVMVDLDVGVELWRSLHKSGVIPCGLGARDTLRLEAAMALYGQDIDDTTTPLEAGLGWLVHLDTKGDFIGREVLAEQKSKGVKRRLVGLQTQGRNIARHGYQVLSTGKVVGEVSSGTLSPTLGYPIALAYVPTQLATVGQQLEVEIRGKAYPAVVVKRPFYRSKNRAAN
>NC_010628.1|WP_012410113.1|4731073_4731571_+|pentapeptide-repeat-containing-protein
MKYWRLLASFVLAMVLFLFPLSAEAASSSSITRSMGNDELKAKDYSGQNLVGSEFTNLKLENANFSNADLRGGVFNGTLLEGVNLHGVDFSEGIAYLTRFKDADLSDAVLTDAMMLRSTFDDVNVTGADFTNAILDGTQVKKLCVKASGVNSKTGVDTRQSLGCK
>NC_010628.1|WP_012410114.1|4731759_4733526_-|tetratricopeptide-repeat-protein
MQWANFLAKEAATHGLSIQQTAAFIEYFQTENLGKNEAELASELNVDIADFKKLLGEVYNKFAQNYPELTISKSQDKLQKLQSYLTAKYNTELNILKPLAAMKLLKTLVARERLQKEPWIARRICKFLGYLPLALELVGQYLNKMPDLSLETLLKRLEKKRVEHENVVNDRSLMFDKDGVAEAFELSWELLDENAKSFGCLLSLSALANIPLSIGTVEDDKKQELWDKAIADLLELHLLQQESQGIYRLNPMIRQLFQMKLEKSGEADEAKTKFAAMMLEVAKLIPQQLTPEDIANLTPHIPHITEVATHLSQYVSDENLITLFTKLAWFYQGQGLYQQAESWLQQCVELTKNRLGLEHPDVATSLNNLAQLYDFTGRYSEAEPLYQQALELRKRLLGEEHTDVATTLSYLALLYESTGRYKEAEPLYQQALKLWKRLVGEEHPHVATTLNNLAALYCYMGRYSKAEPLLKKALEMRKRLLGDNHLDVATSLNNLAQLYESTRRYSKAEPLYQQALELSKRLLGEEHPDVAISLNNLAALYRQTRRYKKAKPLFEQALKICERTLGVGHPTTMTIRANYASFLKEAYR
>NC_010628.1|WP_012410115.1|4733890_4735219_+|hypothetical-protein
MTQVDILILSNGPGEVTTWVRPVVRALRQQFGDDRNQVRISVVLSPCSNASGKEAAIALSYPEVDRVQAAEHFWQFLLWGKTIDNWDWRSRGVVVFLGGDQIFPVVIGKKLGYRTVVYAEWEARWHNWIDRFGVMKPEVAARAPHKYAHKFTVVGDLMVEANSHSSLVIGDLSNDKELMTNDIDASTTSHSVGQKTELIGLLPGSKAAKLAQGVPLCLSIAEYVHAKRPQTKFVIPVAPTLDLQTLASFADPQRNSIAEIFGFGGAALIVPEDDRDKALLKTAKGVTVELWQENPAYHLLSQCCICLTTVGANTAELGALGVPMIVLLPTQQLDAMRAWDGLPGLLANLPGVGTPFANTINWLFLRFVRRKGLLAWPNIWAQEEIVPELMGKLQPPEIGEMVVELLAHPEKLADIRAKLRNIRGESGAALKIAQIVCEEMGK
>NC_010628.1|WP_012410116.1|4735258_4735645_-|hypothetical-protein
MLTEILPFSFELDTIAIAGASLWSLALYIGFSPVNQWVIEQLNRWFNFAERSLYTSQTEFEKTRKGRESQNAFYASLFSITPFLVVGALCNWGLEISLGESWGISTGILACMGAGIYELGRRDGESSD

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Crispr_ID: NC_010628_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_22

4735794-4735902

Orphan

A:N

Consensus_repeat	Method
AATGCATCGGCTGCATCGTTAATGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_22

>merge|NC_010628|22|4735794-4735902|CRISPRCasFinder
AATGCATCGGCTGCATCGTTAATGCACTGGCTTACAATCTTAATGCATCGGCTTACAATCTTAATGCATCGGCTTACAATCTTAATGCGTCGGCTGCATCGTTAATGCA

>NC_010628|22|21|4735794-4735902|CRISPRCasFinder
AATGCATCGGCTGCATCGTTAATGCA	CTGGCTTACAATCTTAATGCATCGGCTTACAATCTTAATGCATCGGCTTACAATCTT
AATGCGTCGGCTGCATCGTTAATGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012410118.1\|4739691_4741146_+\|NHLP-bacteriocin-system-secretion-protein	unknown	unknown	gnl\|CDD\|274787
NC_010628.1\|WP_012410126.1\|4754555_4755488_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NC_010628.1\|WP_012410125.1\|4753461_4754340_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|237636
NC_010628.1\|WP_041566286.1\|4729594_4730731_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NC_010628.1\|WP_012410123.1\|4752263_4752698_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240038
NC_010628.1\|WP_012410115.1\|4733890_4735219_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223834
NC_010628.1\|WP_012410111.1\|4729079_4729469_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NC_010628.1\|WP_012410107.1\|4720044_4720917_+\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224016
NC_010628.1\|WP_012410122.1\|4750945_4752049_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_010628.1\|WP_012410119.1\|4741702_4747024_+\|NHLP-family-bacteriocin-export-ABC-transporter-peptidase/permease/ATPase-subunit	unknown	unknown	gnl\|CDD\|274788
NC_010628.1\|WP_012410113.1\|4731073_4731571_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_010628.1\|WP_012410117.1\|4735936_4738615_-\|DNA-mismatch-repair-protein-MutS	unknown	unknown	gnl\|CDD\|235444
NC_010628.1\|WP_012410114.1\|4731759_4733526_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NC_010628.1\|WP_041566288.1\|4749473_4750880_+\|ATPase	unknown	unknown	gnl\|CDD\|223715
NC_010628.1\|WP_012410108.1\|4722081_4722645_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_010628.1\|WP_012410120.1\|4747369_4748971_-\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|226070
NC_010628.1\|WP_012410109.1\|4723921_4725445_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379533
NC_010628.1\|WP_012410116.1\|4735258_4735645_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410110.1\|4725968_4728908_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NC_010628.1\|WP_041566289.1\|4752722_4753139_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236794

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012410118.1\|4739691_4741146_+\|NHLP-bacteriocin-system-secretion-protein	gnl\|CDD\|274787	TIGR03794, conserved_hypothetical_protein, NHLM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a leader peptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Leader Microcin, or NHLM. This family, therefore, is designated as NHLM bacteriocin system secretion protein. Some but not all NHLM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products].	8.23713e-96
NC_010628.1\|WP_012410126.1\|4754555_4755488_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	4.33918e-98
NC_010628.1\|WP_012410125.1\|4753461_4754340_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|237636	PRK14186, PRK14186, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NC_010628.1\|WP_041566286.1\|4729594_4730731_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NC_010628.1\|WP_012410115.1\|4733890_4735219_+\|hypothetical-protein	gnl\|CDD\|223834	COG0763, LpxB, Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane].	1.83859e-11
NC_010628.1\|WP_012410111.1\|4729079_4729469_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	1.99328e-65
NC_010628.1\|WP_012410107.1\|4720044_4720917_+\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224016	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane].	9.64349e-77
NC_010628.1\|WP_012410122.1\|4750945_4752049_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.29081e-52
NC_010628.1\|WP_012410119.1\|4741702_4747024_+\|NHLP-family-bacteriocin-export-ABC-transporter-peptidase/permease/ATPase-subunit	gnl\|CDD\|274788	TIGR03796, ABC_transporter_related, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products].	0
NC_010628.1\|WP_012410113.1\|4731073_4731571_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.11536e-13
NC_010628.1\|WP_012410117.1\|4735936_4738615_-\|DNA-mismatch-repair-protein-MutS	gnl\|CDD\|235444	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional.	0
NC_010628.1\|WP_012410114.1\|4731759_4733526_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	7.09144e-16
NC_010628.1\|WP_041566288.1\|4749473_4750880_+\|ATPase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.06947e-45
NC_010628.1\|WP_012410108.1\|4722081_4722645_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.88606e-37
NC_010628.1\|WP_012410120.1\|4747369_4748971_-\|alkaline-phosphatase	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	0
NC_010628.1\|WP_012410109.1\|4723921_4725445_-\|hypothetical-protein	gnl\|CDD\|379533	pfam14277, DUF4364, Domain of unknown function (DUF4364). This family of proteins is found in bacteria and archaea. Proteins in this family are approximately 180 amino acids in length.	0.000150246
NC_010628.1\|WP_012410123.1\|4752263_4752698_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240038	cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.21904e-39
NC_010628.1\|WP_012410110.1\|4725968_4728908_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NC_010628.1\|WP_041566289.1\|4752722_4753139_-\|hypothetical-protein	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0.00202705

>NC_010628.1|WP_012410116.1|4735258_4735645_-|hypothetical-protein
MLTEILPFSFELDTIAIAGASLWSLALYIGFSPVNQWVIEQLNRWFNFAERSLYTSQTEFEKTRKGRESQNAFYASLFSITPFLVVGALCNWGLEISLGESWGISTGILACMGAGIYELGRRDGESSD
>NC_010628.1|WP_012410115.1|4733890_4735219_+|hypothetical-protein
MTQVDILILSNGPGEVTTWVRPVVRALRQQFGDDRNQVRISVVLSPCSNASGKEAAIALSYPEVDRVQAAEHFWQFLLWGKTIDNWDWRSRGVVVFLGGDQIFPVVIGKKLGYRTVVYAEWEARWHNWIDRFGVMKPEVAARAPHKYAHKFTVVGDLMVEANSHSSLVIGDLSNDKELMTNDIDASTTSHSVGQKTELIGLLPGSKAAKLAQGVPLCLSIAEYVHAKRPQTKFVIPVAPTLDLQTLASFADPQRNSIAEIFGFGGAALIVPEDDRDKALLKTAKGVTVELWQENPAYHLLSQCCICLTTVGANTAELGALGVPMIVLLPTQQLDAMRAWDGLPGLLANLPGVGTPFANTINWLFLRFVRRKGLLAWPNIWAQEEIVPELMGKLQPPEIGEMVVELLAHPEKLADIRAKLRNIRGESGAALKIAQIVCEEMGK
>NC_010628.1|WP_012410114.1|4731759_4733526_-|tetratricopeptide-repeat-protein
MQWANFLAKEAATHGLSIQQTAAFIEYFQTENLGKNEAELASELNVDIADFKKLLGEVYNKFAQNYPELTISKSQDKLQKLQSYLTAKYNTELNILKPLAAMKLLKTLVARERLQKEPWIARRICKFLGYLPLALELVGQYLNKMPDLSLETLLKRLEKKRVEHENVVNDRSLMFDKDGVAEAFELSWELLDENAKSFGCLLSLSALANIPLSIGTVEDDKKQELWDKAIADLLELHLLQQESQGIYRLNPMIRQLFQMKLEKSGEADEAKTKFAAMMLEVAKLIPQQLTPEDIANLTPHIPHITEVATHLSQYVSDENLITLFTKLAWFYQGQGLYQQAESWLQQCVELTKNRLGLEHPDVATSLNNLAQLYDFTGRYSEAEPLYQQALELRKRLLGEEHTDVATTLSYLALLYESTGRYKEAEPLYQQALKLWKRLVGEEHPHVATTLNNLAALYCYMGRYSKAEPLLKKALEMRKRLLGDNHLDVATSLNNLAQLYESTRRYSKAEPLYQQALELSKRLLGEEHPDVAISLNNLAALYRQTRRYKKAKPLFEQALKICERTLGVGHPTTMTIRANYASFLKEAYR
>NC_010628.1|WP_012410113.1|4731073_4731571_+|pentapeptide-repeat-containing-protein
MKYWRLLASFVLAMVLFLFPLSAEAASSSSITRSMGNDELKAKDYSGQNLVGSEFTNLKLENANFSNADLRGGVFNGTLLEGVNLHGVDFSEGIAYLTRFKDADLSDAVLTDAMMLRSTFDDVNVTGADFTNAILDGTQVKKLCVKASGVNSKTGVDTRQSLGCK
>NC_010628.1|WP_041566286.1|4729594_4730731_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MANQEDNTQSLARTPLYQVGVELKARFTSFGGWEMPVQFSGISREHEAVRNAAGMFDISHMGKFTLQGKNLISQLQSLVPSDLSRLQPGQAQYTVLLNHQAGIIDDIIVYYQGEDTTGIQKAFIIVNAATSGKDKAWILQHLDLDKVQFQDLSPDKVLIAVQGTKAIKYLQPLVQEDLQPIKAFGHLEATLLGKPAFLARTGYTGEDGFEVMVDLDVGVELWRSLHKSGVIPCGLGARDTLRLEAAMALYGQDIDDTTTPLEAGLGWLVHLDTKGDFIGREVLAEQKSKGVKRRLVGLQTQGRNIARHGYQVLSTGKVVGEVSSGTLSPTLGYPIALAYVPTQLATVGQQLEVEIRGKAYPAVVVKRPFYRSKNRAAN
>NC_010628.1|WP_012410111.1|4729079_4729469_-|glycine-cleavage-system-protein-GcvH
MSFEYPQDFRYLDSHEYVRIDGEIATIGITEFAVHELGDIVFLELPEIGDALTRGENFGTIESVKAVEELNSPVTGTVIERNEALINSPEEVSEDPYGEGWFLKVRVNDPGEIEDALTADEYRAQVEGE
>NC_010628.1|WP_012410110.1|4725968_4728908_-|aminomethyl-transferring-glycine-dehydrogenase
MVLNAPILKSNEQQVLNQKSQKLSSFAPRHIGPNSDDIQQMLKVLGFPSLDALIDKTVPQTIRLKQPLKLPEAESEYAALASLKKIAAKNQVFRSYIGMGYYDTITPLVIGRNILENPGWYTAYTPYQPEIAQGRLEALLNFQTLIIDLTGLEIANASLLDEATAAAEAMSLSYGVSKNQANAYFVSHDCHPQTIDVLQTRAKPLGINIIVGDHQTFDFDRAIFGAVLQYPASDGTIYDYRAFIEKAHAKGALVTVAADPLSLTLLTPPGEFGADIAVGSTQRFGIPLGFGGPHAAYFATKEEYKRLVPGRIVGVSKDAQGKPALRLALQTREQHIRREKATSNICTAQVLLAVMASMYAVYHGPDGLKQIAENIHQLTLMLAAGLKHLGYKISSEHFFDTLRVELGTRSLEVILEACQARNINLRIFDDTAVGISVDETTTADDLIELFEIFAAPDSLLFGFKEIGDLIAARRKSSLQNSTFARTSNYLTHPVFNRYHSETELLRYLHKLESKDLSLTTSMIPLGSCTMKLNATAEMIPVTWEEFGKIHPFAPASQTQGYQILFQQLEAWLAEITGFAGISLQPNAGSQGEYAGLLVIRQYHENRGEAHRNVCLIPTSAHGTNPASAVMCGMKVVAVACDSQGNIDVDDLKAKAEKHSHELAALMVTYPSTHGVFEEPIQEICAVVHSHGGQVYMDGANMNAQVGICRPGDIGADVCHLNLHKTFCIPHGGGGPGMGPIGVASHLVPFLPGHPVVTINDSTQHSHIGAVAAAPWGSASILVISWMYIAMMGADGLTQATKVAILNANYIAKKLESYYPVLYQGKNGLVAHECILDLRSLKKSAAIEIDDVAKRLMDYGFHAPTVSWPVGGTIMVEPTESESKQELDRFCDALIAIRQEIAEIEVGKVDAQDNVLKNAPHTAESLITGEWQHPYSREQAAYPAPWTREYKFWPAVGRIDAAFGDRNFVCSCLPMDAYSS
>NC_010628.1|WP_012410109.1|4723921_4725445_-|hypothetical-protein
MNIDPVVNALKSIAKPEASLVINQAQRNETVVRTLKQFNFDPVQPPKDVDGVYVYSLIEYGVDKQEVLLNLFREREIKNAFWSAYTSNNPLGFYKKVEKFLQGTDSEYDIRLMKIELRSQLEEFGEIFIQVAKRSKSIEFEPFPEWNLDEYPTEFKSLIREKIRSFCGRQFVFDAFKQFCNKNRSGYFTVAGDAGMGKSTIAAKYVWDNKSPCYFNIRQTSSNRAELFLESIRKQLSKRYQLQNVEKANLADLLEQVSKRIPVSESLVIVVDALDEVEQEAGGNLLDLPTALPERVYFLLTRRPYTIDKKRLSAPDVPMEELDLRANDYVNLSREDIKKYIGLFLNVDEDHKKALRQWIKDRNIDDNDFVEQVATKSENNFMYLRYVLPGIAKGDYQDLNLTQLPDGLQDYYQVHWVRMRMDVKPQEVKVFILFILVEIGTPITWKMIADIAKQEEYDVQLVLDEWVEYLKEQTIDGDNCYSIYHASFLDFLKSKPVLNTKRKLLKK
>NC_010628.1|WP_012410108.1|4722081_4722645_+|Uma2-family-endonuclease
MTVQLLRRKFTVEQFHKMIESGILSEDDRVELIRGEIIEMSPIGTKHAACVNRLINLLMQLLGKRVILAAQNPIALNNNSEPQPDVALLKPRDDFYETAHPQPQDIFLLIEVADSTVMYDREEKIPLYAQANIIEVWLVDINEQIVEVYQQPTAARYQFMQKFASGQTLSIPAFLDVNITVKEIFGR
>NC_010628.1|WP_012410107.1|4720044_4720917_+|NAD(P)-dependent-oxidoreductase
MKKLLITGASGFLGWHLCQLAKPEWEIYGTYLSHPLEIPGIKTLKANLTNFQELKRIFNDVKPEAVIHTAAHSQPNFCQTNPKESHAINVIASCNIAGLCADNSIPCAFTSTDLVFDGLNAPYQEIDAVCPVNLYGEQKAIAEAGMLERYPLTAVCRMPLMFGAATPTAKSFIQPFIQTLQAEKELNLFIDEFRTPVSGTTAAKGLLLALEKVNGIIHLGGKERLSRYDFGKILVEVFQLPTTKLKSCRQEDVKMAAPRPADVSLDSSKAFALGYQPLSLKEELQNLINS
>NC_010628.1|WP_012410117.1|4735936_4738615_-|DNA-mismatch-repair-protein-MutS
MTASHSETPSTKPDASTFISDHLQVDRSKLSQMYLHYVETKDKYPHAVLLYRVGDFFECYFQDAVKLAQELELVLTSKQAGEQGRVAMSGVPHHAWERYATLLVEKGYAVVICDQVEDASEAAGRLVRREVTRILTPGTLLEEGMLKSSRNNYLAAVVIAANHWGLAYADISTGEFLTTQGSDLEHLTQELMRLQPSEVLVPTNAPDLGSLLRPGETSPHLPECLPPSFCYSLRSQVPFSQGEARPRLLQKFKVRSLEGLGCDRFPLAVRAAGGLLEYLEDTQKENPVPLQRLRTYTVTDYLIVDSQTRRNLEITQTVRDGTFHGSLLWSLDRTSTAMGGRALRRWLLQPLLDIKGIRARQDTIQELMENTPLRQDLRQLLRQIYDLERLTGRAGSGTANARDLVALADSLSRLPELSHLVTESHSPFLKALQKVPSVLEELAQKLHAHLVESPPILIKEGGLIRPSVNPLLDERKATVEADQQWIANLEVDERAKTGISTLKVGFNKTFGYYISISRTKADQVPANYIRKQTLTNEERYITPDLKEREARILSARDDLNQLEYEIFTALREEVAQEAEVIRNLSRAVAAADVLCGLAELAVHQGYCRPEMLSGREINIVDGRHPVVEQSLPAGFFVPNSTQLGQESLVSSHLSLADNQEQITNTSLREAAPTTTLSTSDQGQMTNDNPDLIILTGPNASGKSCYLRQVGLIQLMAQIGSFVPARLAKLGICDRIFTRVGAVDDLATGQSTFMVEMNETANILNHATSRSLVLLDEIGRGTATFDGLSIAWAVAEYIAVDIRARTIFATHYHELNELASIVPNVANYQVTVKELPDQIIFLHQVQPGGADKSYGIEAGRLAGLPAVVIQRAKQVMGQIEKHSKIAMGLQNLD
>NC_010628.1|WP_012410118.1|4739691_4741146_+|NHLP-bacteriocin-system-secretion-protein
MINQKSDLFRKEALERASSPEELDQIMQVVSPKKWLPLVAGGSLVATGLTWSFLGRIPITVTGTGIIVYPSTITSFQSPIAGKLRTINVRAGDYVNRGDVLATLDQGELMKQLQLVRSKLGQLPTEDSAASLVQGQRQNADKEAIKQQRQSLQQNLQAVQKLTPILREKGLNSIQRDRANQTQSLQALRDLLPTFKQRLTNRQQLLQEGAISGDTVLQSQQDYLNAVTQINEAESQLKQLDVKEADAQRQYLENLNSIKDLQAQLKQLDSKEATAAQQDLETVTTRKKEIQEVQRNIVQLALQLSSNSLVKSSYSGRILEISASPGQVVLQGTPIGAIAAQKRSAQPVSVAFFPVGDGKQIQPGMKLQVTPSTVQRERFGGIIGAVTEVSAFPVTKEGALSVVGNSEFVEALMSQGPQILITARLQPDNSTFSEYKWSSSQGPQTKVTYGTTTSVQVTGYCWRKCYKRINKSVTTKSCNGRLKV
>NC_010628.1|WP_012410119.1|4741702_4747024_+|NHLP-family-bacteriocin-export-ABC-transporter-peptidase/permease/ATPase-subunit
MFWRNLQNILGRLRKNKRCHTPTLLQMEVVECGAAALGIILGYYNRIVPLTELRQACGVSRDGVSALNILKAARNYRLSAKSFKTNLAGLLQLKFPYIVFWNFNHFLVVEGITKQRVYLNDPATGRRIVSLEEFSGAYTGVVLVLEPGSEFQRGGRKPSTILALWSRLRGSIGALLYCVLAGFLLVIPGLALPAFSQVFVDNVLIEHRYEWLRPLILGMIFTAGLSGFLTLLQLQFLRQMKIKLSVGMKSRYLWHILRLPVSFYDQRYAGEISSRMQLNDSIADMLSGELATTVIAAASVFLYVIVMLQYDVVLTLIAIAFVIINLAALQWVRGRRVDANIKLIQEQGKVRGVEISGLQSIETLKASGLESDFFSRWGGHYAKAINTQQELEETNQTIGVLPSFLSAIASMLLLAVGGLRVMDGALSIGMLIAFLGMTQRFFAPVSNLISLGSELQEMEGNLTRLDDVLRNPIDRQLEQGGREAGEQGSRGAGEKEDNCNLSPLPLCPSAPLPKLQGYVELRNVTFGYSQIAPPLIQNFNLSLKPGQRVALVGGSGSGKSTIAKLLCGLYEPWQGEIRFDGKPREQISRQVLANSISVVEQEILLFAGSVRDNLTLWDTTIPDSHLVRACQDAALHDVILSLPGGYHADLLEGATNLSGGQRQRLEIARALVNNPSILIMDEATSALDAETEKNVSRNLRLRGCTCIIVAHRLSTIRDCDEIIVLDRGKIVQRGSHAELQQVEGTYLQLIRSEETEEAGEQGSRGAGGAGGAGGAGGAGEAGEEITSLSPVSPSSLLSFANLKGQHYRFQCNESLLLDDPETIWLVKSGYLALFAIAVNDGIPEGTRRYLFSSTAGQAMFAIAPSLQGKQQEILAVSLEETEILKVSRADFNQLFADANKEVVTLIERWIAQLGSVLASITTPTTPTSLPKTRQFSLVKDQIFQSHQISWVQIFQGRARWMGFEQLPLTSASRMLPLAENMWLQADNTVELKSVNTADIEDIDSLLSGLSQLQTYFLHCINLLQRQEMDAELLRFQGRERLESQVMQETLAELAYVLPQPKSDRLNNSLGFSSNLDATDPNQALLIAAGAVGRALGIKICPPAASEDSNRVQDPVEAIARASRIRVRRIQLRDNWWQKDCGPMLAFTLADKLPVALLPVSDTRYKLYVPGERTPISVDANIAAALAKTAYAFYRPLPDKKLKTFDLLQFALQGHYKELIIVLVMGITISLLGMLTPQATAILIDKAIPDANRGLLSQIAVGLVAAAFGGTLFQLALGFATIRLETFADSSTQAAVWDRLLNLKVSFFRSFSVGDLDSRVTAITQIRQRLGNTVLKTIFSSLFSLLNLGLLFYYNVSLALIACAVALVNIAVTIISGTLIVRKVRPLLELQGQIFGVMVQLINGVAKLRIAKAETRAFAYWGKQYTHQLKLMLSTQGIEDSLAVINQVLPVLTTAALFWFATSLIGQSQTPGGGGLSTGTFLAFNVAFGTFINGATSLSSTVVEVLQVLPLWQRAQPILQAEPEISSAQADPGRLSGKLVVDRITFRYRDDGPLTLDDVNIRAEPGEFIAIVGPSGSGKSTLLRLLLGFEFPKSGTIYYDGQDLTSLDVHAVRRQLGVVLQNSRLMSASIFENIASGALVTMDEAWEAAQMAGFADDVAAMPMQMHTIVSEGGSNLSGGQRQRLLIARALVLKPRILLFDEATSALDNRTQAIVSESLQQLKVTRVAIAHRLSTIQNADRIYVLANGKVVQQGSFVELGNQSGLFAQLMMQQLI
>NC_010628.1|WP_012410120.1|4747369_4748971_-|alkaline-phosphatase
MESHNQLRLNRRQFLLRSAITAGGIISTNFVSKSKVFAEAPAIITSDKMRPAIPYGVASGDISNESIVIWSRSDRPAKMLVEYSTSESFRNVQRVVGPNALQNSDFTARLYLRNLPPDQQLFYRVIFQDLDYKGTYSAPVKGTFRTPPKSRRDIFFVWGGDTAGQGWGINPDFGGMKIYETMRQLNPDFFIHSGDNIYADGPIQSEVKLDDGTIWKNITTPEKSKVAETLTEFRGNYIYNLLDENIKRFNAEVPILAQWDDHETRNNWYPGQIILNDDRYTVKDVNLLTQRARQAFLEYLPIGYTTNEPDKARIYRSFKHGPLLDIFMLDERTYRGPNSPNNQPVPSKDTEFAGRIQIQWLKRQLLSSKATWKVIASDMPLGLIVRDGSTDFEAWANGDGPALGRELELADLLRFIKNKNIQNVVWLTADVHYAAAHYYDPSKAQFTDFKPFWEFVAGPLNSGTFGPNQLENTFGPQLIFQSLPPGTKANRPPSEGLQFFGGVKIDGNTKVMTVTLRNLAGETVYSIDLPPEK
>NC_010628.1|WP_041566288.1|4749473_4750880_+|ATPase
MLTIGGTTNANESNLRLESTLQELLSWQVHIEVERPGNDLSILFNQEPLLPGIILNNNQEYVGMISRRKFFEYMSHPYSLALFSTKPIKILYKFFQTEILAISEDMSIVKATEITLQRPPQIAYEPILVKTTCGKYKLLDFHQLLLAYSQIHVLTLVQLQQVEEQSRVAKAGFRDLQQNYTRLIQNEKMAALGQLVAGIAHEINNPVNFIAGNLVHAIEYSQNLLNLIRLYQQCYPEPEADIKTAIAQIELDFLTTDLPRLLTSMEVGTKRIEQIILSLRNFSRLDESEKKLVDIHEGIDSTLTILQSRLQNNQIGANINIIKEYSDLPQVECYAGLLNQVFMNILANAIDAIEESLVTCTERSRSISHSSLVRDKGKIFIRTQLTDENQVIIRISDNGPGIPENLQKQLFDPFFTTKPVGKGTGLGLSISYQIVVEKHGGHLQCISTFGKGTEFIIEIPIHLNSELV
>NC_010628.1|WP_012410122.1|4750945_4752049_-|AI-2E-family-transporter
MQSANKLPRWLTIGLAFPIIILNGWLLIQVVQYFQPLISIIAAAILLAFVLNYPIQFLQEQGVKRNLAIAGVLLLTLVILVALGITLVPLIIQQLVELANILPSWIDSGTQQLQTFQDWALSQQQLPINLSGLFTQVLERLSNQLQSFTGRILGFAVDTIGIVLNVLLAVVLTVYLILNGERLWDGIFQWFPHNIGLRLRELLREDFHNYFIGQATLGAVLGVTITLAFLTLRVPLALLFGIGIGLFSLFPFGTGFGIAIVSLLVALQNFWLGVEVLGIAVAIDQVNSNFVAPRILGNLTGLNPVWVVISLLLGAKLGGVLGLLIAIPIASFIKDTTDSWRAGEFNKIDDIVSEPITVTSETAGTYS
>NC_010628.1|WP_012410123.1|4752263_4752698_-|NUDIX-domain-containing-protein
MKNQPVHVAIAILYQENKFLMQLRDNIPGILYPGYWALFGGHIEPGETPNVAVKREILEEIGYELPPFVEFGCYTDERVVRHIFHAPLLVELNQLVLNEGWDMGLLTPEDIHQGNCYSQNAREVRPLGNTHRQIMLDFMERNQS
>NC_010628.1|WP_041566289.1|4752722_4753139_-|hypothetical-protein
MQQTRNLSLSFLSGHNIVSYRLGLIFLLVVGLCSCGSLTSSGLNGTNFKIGSNVTPIREIKPEQDNQATVYIQGQVEKQAPLMKQWAYQINDSTGKIWVITNQKNLAKGAQVVIKGKIRYQSIPLGGKELGEVYLEEE
>NC_010628.1|WP_012410125.1|4753461_4754340_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
METKTAKLLDGKAIAAKIQQELSVAITQLQPEIGRPPGLAVLMVGDNPASAAYVRNKEKACAKVGIASFGKHFPAETTFRELEKVIAALNDDERVDGILVQLPLPDHLDAVALLHQIDPDKDADGLHPVNLGRLVRGEIGLRSCTPDGVMRLLQEYEIPLQGKQAVVVGRSILVGKPMALMLLEADATVTIAHSRSHDLKSITQNADILIAAAGRPGLITADMVKPGAVVVDVGMNRVTDASGKSRLIGDVDFESTAGVAGFITPVPGGVGPMTVAILLQNTFTSYSRAAKK
>NC_010628.1|WP_012410126.1|4754555_4755488_+|polyprenyl-synthetase-family-protein
MVATDNVQKTPPEEATFNLVAYLKERQKLCDNALDRAIPIIYPEKIYEAMRYSLLAGGKRVRPILCLATCEMMGGTIEMAMPTACAVEMIHTMSLIHDDLPAMDNDDYRRGKLTNHKVYGEDVAILAGDGLLALAFELVALKTPANVNRELTLQVIVRLGRALGAAGLVGGQVVDLECEGKSDISLETLNFIHRHKTSALLEACVVSGGIIAGASTEDVQRLTRYAENIGLAFQIIDDILDITSTKEQLGKTAGKDQKAKKVTYPSLWGLEESRLKAQELVKVACAELEPFGDRAKPLQAIAHFITSRNN

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Crispr_ID: NC_010628_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_23

4939090-4939185

Orphan

A:N

Consensus_repeat	Method
ATTGGGAATTGGGAATTGGGCAT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_010628_23

>merge|NC_010628|23|4939090-4939185|CRISPRCasFinder
ATAGTTATTTTGGCATTGGGAATTGGGAATTGGGCATTGGGAATTGGGCATTGGGAATCCTTTCGGCTTCGCTCAGGGCAATTGGGAATTGGGAAT

>NC_010628|23|22|4939090-4939185|CRISPRCasFinder
ATAGTTATTTTGGCATTGGGAAT	TGGGAATTGGGCATTGGGAATTGGGCATTGGGAATCCTTTCGGCTTCGCT
CAGGGCAATTGGGAATTGGGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012410273.1\|4937178_4937961_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223488
NC_010628.1\|WP_012410277.1\|4940006_4941593_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|237609
NC_010628.1\|WP_012410270.1\|4934218_4935505_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NC_010628.1\|WP_175586605.1\|4939649_4939895_+\|cytotoxic-translational-repressor-of-toxin-antitoxin-stability-system	unknown	unknown	unknown
NC_010628.1\|WP_052304635.1\|4944218_4945418_-\|DUF1802-family-protein	unknown	unknown	gnl\|CDD\|370138
NC_010628.1\|WP_012410266.1\|4931647_4931962_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NC_010628.1\|WP_012410271.1\|4935610_4936195_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|226378
NC_010628.1\|WP_012410269.1\|4932939_4933977_+\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NC_010628.1\|WP_012410267.1\|4932009_4932582_-\|DUF981-domain-containing-protein	unknown	unknown	gnl\|CDD\|368771
NC_010628.1\|WP_012410278.1\|4941862_4942525_-\|Nif11-family-protein	unknown	unknown	gnl\|CDD\|369562
NC_010628.1\|WP_012410280.1\|4947347_4948001_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410274.1\|4937950_4939084_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226645
NC_010628.1\|WP_012410264.1\|4930044_4930803_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|223282
NC_010628.1\|WP_012410281.1\|4948340_4948823_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410279.1\|4945423_4947283_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410282.1\|4948916_4949240_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410272.1\|4936238_4936829_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NC_010628.1\|WP_012410265.1\|4930916_4931402_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_010628.1\|WP_012406904.1\|4943302_4944196_-\|transposase-family-protein	unknown	unknown	gnl\|CDD\|372577
NC_010628.1\|WP_012410275.1\|4939377_4939575_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012406904.1\|4943302_4944196_-\|transposase-family-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.34968e-24
NC_010628.1\|WP_012410277.1\|4940006_4941593_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|237609	PRK14096, pgi, glucose-6-phosphate isomerase; Provisional.	0
NC_010628.1\|WP_012410270.1\|4934218_4935505_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NC_010628.1\|WP_052304635.1\|4944218_4945418_-\|DUF1802-family-protein	gnl\|CDD\|370138	pfam08819, DUF1802, Domain of unknown function (DUF1802). The function of this family is unknown. This region is found associated with a pfam04471 suggesting they could be part of a restriction modification system..	2.06741e-40
NC_010628.1\|WP_012410266.1\|4931647_4931962_-\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	4.96039e-43
NC_010628.1\|WP_012410271.1\|4935610_4936195_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|226378	COG3860, COG3860, Uncharacterized protein conserved in bacteria [Function unknown].	2.59949e-31
NC_010628.1\|WP_012410269.1\|4932939_4933977_+\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NC_010628.1\|WP_012410267.1\|4932009_4932582_-\|DUF981-domain-containing-protein	gnl\|CDD\|368771	pfam06168, DUF981, Protein of unknown function (DUF981). Family of uncharacterized proteins found in bacteria and archaea.	2.70247e-53
NC_010628.1\|WP_012410278.1\|4941862_4942525_-\|Nif11-family-protein	gnl\|CDD\|369562	pfam07862, Nif11, Nif11 domain. This domain is found mainly in the Cyanobacteria and in Proteobacteria such as the nitrogen-fixing bacterium Azotobacter vinelandii. It is found in Nif11, a protein described in Azotobacter as linked to nitrogen fixation. It also constitutes a leader peptide in Nif11-derived peptides (N11P), which are thought to be post-translationally modified microcins derived from a putative nitrogen-fixing protein. N11P sequences have a classic leader peptide cleavage motif, usually Gly-Gly, which marks the end of family-wide similarity area and the beginning of a low-complexity region rich in Cys, Gly and Ser.	3.77939e-05
NC_010628.1\|WP_012410274.1\|4937950_4939084_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|226645	COG4177, LivM, ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism].	5.834e-47
NC_010628.1\|WP_012410264.1\|4930044_4930803_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|223282	COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism].	3.2176e-32
NC_010628.1\|WP_012410272.1\|4936238_4936829_+\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.48625e-29
NC_010628.1\|WP_012410265.1\|4930916_4931402_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	6.19869e-64
NC_010628.1\|WP_012410273.1\|4937178_4937961_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	4.25086e-129

>NC_010628.1|WP_012410274.1|4937950_4939084_-|branched-chain-amino-acid-ABC-transporter-permease
MVDYLIFLAISTALFALFGLGLNLQWGFTGLINFGHIAFMTLGAYTTVLLSLKGVPLLISAVAGAIVAALLGLIIGFATLRLREDYLGIVTIGTGELIRLVVNNQDLPVGDTWVSGAFGVQSYSIPLSTEPNLFVRLLMIGLLTLLAAVTFFTLWQWIRTTQISRTTDLGKRTTSKQEFVSRLAVGIVLAVLATAIYISGVIGLYNYNPKAGLMLVLLLVLALVYWRLEILVRSPWGRILKAIREDEEIPKALGKNVFWYKLQSLILGGAIAGIAGAFFAWQLSAIYPDNFQPQITFDTWIMVILGGSGNNVGTILGAVIFFAYDALTREVLPRIVHLDEARLGAFRIMVIGLILMILMIWRPQGILGKKEELTLGK
>NC_010628.1|WP_012410273.1|4937178_4937961_-|ABC-transporter-ATP-binding-protein
MVNNYSSPLPLLVATGLSKSFGGVKAVNEAKIEVAKGSITGLIGPNGAGKTTLFNLLSNFIRPDKGRVIFDGEPIHNLQPYQIAQQGVIRTFQVARTLSRLSVLENMLLAAQKQTGENFWQVQLQPHLVAKEEKQLQERAMFLLESVGLAKKAHDYAGCLSGGQRKLLEMGRALMTNPKLILLDEPAAGVNPKLIDDICDRIITWNRQDGMTFLIIEHNMDVIMSLCDRVWVLAEGQNLADGTPAEIQTNPKVLEAYLGK
>NC_010628.1|WP_012410272.1|4936238_4936829_+|Uma2-family-endonuclease
MQLETQKLYYTPEEYLEIEEKAEYKSEYRDGEIVPMTGGTTNHNKIALNLAASLKIALRRKNYDVYIGDVRLWIPRYRQHTYPDVMVIEGQPIYTGTSTTTVMNPVLIAEVLSKSTKNYDQGDKFLYYRSIPEFKEYILIDQSQYHVMHYVKTAESQWSFTELEHESAILSLQTVDFKIELRDLYEQVNFAENNED
>NC_010628.1|WP_012410271.1|4935610_4936195_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MESEQFNILLRFFKALADDSRLKIVGILANQECSVEELAVLLQLKEPTVSHHLAKLKELNLVTMRPEGNSRLYQLDSEALQSISKEIFTPEKIASLIEDVDTEAWESKVLKNYFEGDVSDKHSVQRLKEIPASRKKRLVILKWLANQFDVGVNYPERLVNDILKRYHIDCATLRRELIACQLMQRENGIYWRTT
>NC_010628.1|WP_012410270.1|4934218_4935505_+|glutamyl-tRNA-reductase
MNIAVVGLSHKTAPVEVREKLSIPEPQIESAIAQLASYPHIDEVAILSTCNRLEIYIVTSEADQGIREITQFLAEYSKLPVLSLRQHLFMLLHDDAVMHVMRVAGGLDSLVLGEGQILAQVKTTHKLGQQYNGIKTILNRLFKQALTAGKRVRTETSIGTGAVSISSAAVELAQIKVANLAACRVVILGAGKMSRLLVQHLISKGAVEISIVNRSRDRAQELAKLFPQQPIKIHPLSEMMSVIADSDLVFTSTSATEPILDRVKLEMVLEVQRSLMLFDISVPRNVHADVNELENVQAFNVDDLKAVVAQNYESRRKIAQEAEKLLEEEVEAFDIWWRSLETVTTISCLRNKVETIREQELEKALSRLGSEFAEKHQEVIEALTRGIVNKILHDPMVQLRSQQDVEARRRCMQTLQMLFNLDAEEQFS
>NC_010628.1|WP_012410269.1|4932939_4933977_+|class-II-fructose-bisphosphatase
MENTLGLEIIEVVEQAAIASAKWMGKGEKNIADQVAVEAMRERMNKIYMRGRIVIGEGERDDAPMLYIGEEVGICTQPNAEALCNPDELIEIDIAVDPCEGTNLVAYGQPGSMAVLAISEKGGLFAAPDFYMKKLAAPPAAKGKVDINKSATENLKILSECLERSIEELVIVVMKRERHNDLIKEIREAGARVALISDGDVGAAISCGFAGTNIHALMGIGAAPEGVISAAAMRALGGHFQGQLIYDPAIVKTGLIGESREANIDRLKSMNINDPDKVYDAHELASGETVLFAASGITSGNLMNGVRFFNGGARTQSLVISNQSKTARFVDTIHMFGEPKTLQLN
>NC_010628.1|WP_012410267.1|4932009_4932582_-|DUF981-domain-containing-protein
MFIDYITLMLINMVAGLFLLADYVYRGIDSSNQRQWIPGFGITGAIALTTGLHMSFTWLVIGSFNIAFGETSVLFGILFVAAAVSLAQGWDLLTIAIYGFFAGLVAIVVGIRIINLNMTKQPILSGIGFILTGLGGIFAAPTLYWKTNRTWRLIGVAVLIVAALIWALTGYLAYWNHLEGFQKWVPAPMR
>NC_010628.1|WP_012410266.1|4931647_4931962_-|glutaredoxin-3
MLDFLNPLLNRHPERVKANVELYTWQTCPYCIRAKILLWWKGVNFTEYKIDGDEGARAKMAERANGRRTVPQIFINNQHIGGCDDLYQLDTQSQLDPLLAQAAI
>NC_010628.1|WP_012410265.1|4930916_4931402_-|nucleoside-deaminase
MLTKYTEYLIHQEWMSCALELAKVAGDAGEVPVGAVIIDSTGKLLAQGENRKERDKDPTAHAEILALKTAATTLQNWHLNECTLYVTLEPCPMCAGAILQARVGQLVYGVDDTKTGAIRTVINIPDSAASNHGLQVIGGILESACREQLQAWFATRRRRVN
>NC_010628.1|WP_012410264.1|4930044_4930803_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MMEFYSSSDPCQRPPANHQVAGTTSRVSPWLSPLAYLLGRHCLLPLFFGQIRITGQKNIPTTGPIILAPTHRARWDALLVPYATADCRREQDLRFMVTIDECQGLQGWFVKRLGGFPVNSKHPSIRTLRHGVELLQQKKTLVIFPEGNIFRDAQVHQLKPGIARLALSAESSHSGLGVKIIPIGINYSQPYPNWGTDVSIDIGSPIRVADYMSGCIKHDAKSITTDLGKALQQLSHQETKITNHAFAEITNS
>NC_010628.1|WP_012410275.1|4939377_4939575_+|hypothetical-protein
MNLLRLRMHHLIEQLGDEDLQDIWNVLEALHCDFYMLKAIQQVKRSQQPWDILTHEEAVRLLMFF
>NC_010628.1|WP_175586605.1|4939649_4939895_+|cytotoxic-translational-repressor-of-toxin-antitoxin-stability-system
MRYARSFLLDLKNLEPAAYERVHDFVFVELAQKWQLSDLKELRQLDGEGIFHRFTLDNYLIGIEIRGEIVKFLRVIPMPDV
>NC_010628.1|WP_012410277.1|4940006_4941593_+|glucose-6-phosphate-isomerase
MDARALWQRYQNWLYFHEGLGLYLDISRMRFDDAFVESLQPKFDKAFADMAELEKGAIANPDENRMVGHYWLRNPDLAPTPELTQEIVQTLEQIEAFAEKVQTGAIHPPRASRFTDIISIGIGGSALGPQFVAEALAPDFPPLKIHFIDNNDPAGIDRVLNHLRNSLASTLVLVISKSGGTPEPRNGMIEVKKAYAGHNLEFAQYAVAITSVDSNLDKLAKDEGWLARFPMYDWVGGRTSEMSAVGLVPAALQGIDVRAMLDGAKEMDDATRVPDVKNNPAALLALSWYFAGNGKGEKDMVVLPYKDSLFLFSRYLQQLVMESLGKEKDLDGNVVHQGIAVYGNKGSTDQHAYVQQLREGVANFFATFVEVLEDRQGPSTEIDPGVTSGDYLSGFLQGTRQALYENHRDSITVTIPQVNPRTVGALIALYERAVGLYASLVNVNAYHQPGVEAGKKAAASILDLQTRVVAVLQKEKTPISLDELAKKAGASDQIEAIYKILRHIHANQRGVVLQGDLHKPGSLTVSAS
>NC_010628.1|WP_012410278.1|4941862_4942525_-|Nif11-family-protein
MYYQIWNFFLKEDKYIYWQEKIKFNKSYDKVTWQKVIDFLLLVEQTFQLKSQLAETNSLEPFLKLATENGCNLTAEELAWFLVTRRQIWDLFDFAQKTPSLKEELLISKDPQQFVNIAADNGYSFSVEELAWLLIEIKSSPEIVSINNSVGEILTGSNYGRIDIGYWIWLAEDWGIVPPFCHREKQGNLLFGDTNNPFLLDRCFLPKGYFNQRLLVSINS
>NC_010628.1|WP_012406904.1|4943302_4944196_-|transposase-family-protein
MLNIEGALKQDRLLRALTGLNRKAFDALLPTFTTMYLDTQQAKPRQRGLGGGRKARLLTAQDKLFFILFYFKCYPTFDVAGLLFDMHRSQAHEWMHRLQPILEAALGQKMALPERHLESIEAFLSRFPGVQRVMIDGTERPIARPQEREQQQQNYSGKKKRHTRKHLAAVDETKRVLILSKAREGKLHDKRFHDEDDIAGSVPDEIPIEVDSGFQGLQKQYDNLHLPHKKPKGGKLSDLQKTENRQLSQSRVVCENAFAGVKRYNAASVIYRNRIENFDDHLMLTAAGLWNFYLMAA
>NC_010628.1|WP_052304635.1|4944218_4945418_-|DUF1802-family-protein
MINTALRLAAPEIEAFLQGRIIAAMPNKFITPGREFALCPSDASINLLPVEQYYRSSFLPIAQSAFAQLNIQGVLIQPQQMNLLIDEEQLKLPILAYETVLIKTWAKCELCQIINNTESFAALSQLTIWTTEALKEILRQKQNIFLAYLRVYELPKSIEVPIKSNSQFVALSQPLNVSEDKPVLKDRTFAQRKHQLEKLQPPLHPELEELQSAIASLSISQPAAKQLDDDIKVFLGWSSDKLTNPLDSDLPWIQNIAKVGNSSDGHTFEKLVRRGLLKLGFTGSGLNPDATGGAGGMDFYAEQPYPIVGECKATKTEKVTDGTPAQLLKIGMNHLGKFQYDNSIKLIVAAGELNFYALRTATENQMNIVSPETLQKLVELQAHYKNSINLLDLSGNKRE
>NC_010628.1|WP_012410279.1|4945423_4947283_-|hypothetical-protein
MSNDLINIISKHNPFEARLVVRDQNVWGQGFPDVPSLNSHVSDAVYNAIEKVNSGQRKVIGITITAERGLGKSHLISRIRHRLQFDGSALFVYMSQCNNLNRIKAEFLTTLATSLKQIGSQGVSQWQYLATALINEAFNKNYTAQQLINQFPGALVKNPKVVEVLRDKVLGIKPDLENPDIITAILWTLSPDPAYEIFAIRWLAGNSLPQVKADAMGLANVSADDKEAESFTTARQIINLIGDYKPIVVCFDEMETDHCNEIGYTGRQVTAIFAKDLCDKIKRGVLLTSIFPDHWINEVKRLGNADSVVDRIGEQVIELKYLNSDDVIDLVSRWLEEFYQEHTLTPPHALYPFDEQKLRALGKERPIVRKILKWCADNFKFPGIVIDRHPVEPAYNQQISALETTILDYMEDKATLAQALRLGFNAVIGETIENVKIEKVVDVEVKAVDRGYLDFKIVGTENGKNVKIAVAVLQESGGLFVQATLKRLIRYKDFDVTRGCLVRSKQINKGATKAQEHLKTLLSKELGGEWVLLKPEDIKPLLALHFVMKGREDDELSEEQIIDFIHQKQIAIDNYLVREILSDPSGQVPEDAIDEEIESTNITLTEVADGGSVSSGALF
>NC_010628.1|WP_012410280.1|4947347_4948001_-|hypothetical-protein
MTSKNTAQTNTRLLLALWDLGGTQQEVKKGQLTKRIVSKSQKVADYQGSFEELQNQGAIAISKKGYSLTSPKGLEVLGEGLRSGKFKFEGTIVGTWAANALVKWISQIDVAVIGADVPVNGKSAIGSYGEFKSVALEVYDKLNQNYNLDDLVPIYRIRREIGDRVSREDFSEWLLEMQEKDILQLQGGSLPDNDPSKLEDSVTTEVSGLRCYAKLLN
>NC_010628.1|WP_012410281.1|4948340_4948823_+|hypothetical-protein
MNTIYKERKIVSRLFAVLLSALLMVPVLSSCGGGSQKASVPPPVDDTVGRTVSDRQTEAKKGLGTGQKVALLAGAAALYYMYNQHKNAPQEGAQGKYYLSKNGRVYYRDAEHRAHWVTPPPEGIRVPESEAQKYREFQGYNRSATGRDLTGITSSAAPAL
>NC_010628.1|WP_012410282.1|4948916_4949240_+|hypothetical-protein
MVNEFFRKAKDLLLGSNSDQDAEFRDRDVRPASEDPYGDPADPASYGNVIPASQDPYGDPADISSYGNVRPASEDPYGDPADTGEFGDVRPASEDPYGDPADEDYRR

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Crispr_ID: NC_010628_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_24

4949016-4949222

Orphan

A:N

Consensus_repeat	Method
GAAGACCCTTACGGCGACCCCGCAGAT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_010628_24

>merge|NC_010628|24|4949016-4949222|CRISPRCasFinder
GAAGACCCCTACGGCGATCCCGCAGACCCAGCATCTTACGGTAACGTTATTCCAGCCAGTCAAGACCCCTACGGTGACCCCGCAGATATCTCGTCCTACGGCAACGTTCGCCCAGCTAGTGAAGACCCTTACGGCGACCCCGCAGATACAGGGGAGTTTGGTGATGTCCGCCCAGCTAGCGAAGACCCCTACGGCGACCCCGCAGAT

>NC_010628|24|23|4949016-4949222|CRISPRCasFinder
GAAGACCCCTACGGCGATCCCGCAGAC	CCAGCATCTTACGGTAACGTTATTCCAGCCAGT
CAAGACCCCTACGGTGACCCCGCAGAT	ATCTCGTCCTACGGCAACGTTCGCCCAGCTAGT
GAAGACCCTTACGGCGACCCCGCAGAT	ACAGGGGAGTTTGGTGATGTCCGCCCAGCTAGC
GAAGACCCCTACGGCGACCCCGCAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012410289.1\|4953906_4954998_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NC_010628.1\|WP_052304635.1\|4944218_4945418_-\|DUF1802-family-protein	unknown	unknown	gnl\|CDD\|370138
NC_010628.1\|WP_012410277.1\|4940006_4941593_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|237609
NC_010628.1\|WP_012406904.1\|4943302_4944196_-\|transposase-family-protein	unknown	unknown	gnl\|CDD\|372577
NC_010628.1\|WP_012410288.1\|4953590_4953827_+\|DUF3134-domain-containing-protein	unknown	unknown	gnl\|CDD\|371474
NC_010628.1\|WP_012410292.1\|4957845_4958187_-\|photosystem-II-reaction-center-protein-Psb28	unknown	unknown	gnl\|CDD\|237446
NC_010628.1\|WP_012410279.1\|4945423_4947283_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410287.1\|4952763_4953348_-\|PAP/fibrillin-family-protein	unknown	unknown	gnl\|CDD\|309752
NC_010628.1\|WP_175586605.1\|4939649_4939895_+\|cytotoxic-translational-repressor-of-toxin-antitoxin-stability-system	unknown	unknown	unknown
NC_010628.1\|WP_012410291.1\|4957237_4957744_-\|molybdenum-cofactor-biosynthesis-protein-MoaB	unknown	unknown	gnl\|CDD\|238451
NC_010628.1\|WP_012410278.1\|4941862_4942525_-\|Nif11-family-protein	unknown	unknown	gnl\|CDD\|369562
NC_010628.1\|WP_012410285.1\|4951143_4952019_-\|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl\|CDD\|184410
NC_010628.1\|WP_012410274.1\|4937950_4939084_-\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226645
NC_010628.1\|WP_012410281.1\|4948340_4948823_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410286.1\|4952263_4952479_-\|photosystem-I-reaction-center-subunit-IV	unknown	unknown	gnl\|CDD\|367080
NC_010628.1\|WP_012410280.1\|4947347_4948001_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410283.1\|4949755_4950739_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|133424
NC_010628.1\|WP_012410284.1\|4950825_4951041_-\|NAD(P)H-quinone-oxidoreductase-subunit-O	unknown	unknown	gnl\|CDD\|371791
NC_010628.1\|WP_148220440.1\|4955348_4956905_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NC_010628.1\|WP_012410275.1\|4939377_4939575_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012410289.1\|4953906_4954998_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	2.58779e-134
NC_010628.1\|WP_052304635.1\|4944218_4945418_-\|DUF1802-family-protein	gnl\|CDD\|370138	pfam08819, DUF1802, Domain of unknown function (DUF1802). The function of this family is unknown. This region is found associated with a pfam04471 suggesting they could be part of a restriction modification system..	2.06741e-40
NC_010628.1\|WP_012410277.1\|4940006_4941593_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|237609	PRK14096, pgi, glucose-6-phosphate isomerase; Provisional.	0
NC_010628.1\|WP_012406904.1\|4943302_4944196_-\|transposase-family-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.34968e-24
NC_010628.1\|WP_012410288.1\|4953590_4953827_+\|DUF3134-domain-containing-protein	gnl\|CDD\|371474	pfam11332, DUF3134, Protein of unknown function (DUF3134). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	8.87086e-24
NC_010628.1\|WP_012410286.1\|4952263_4952479_-\|photosystem-I-reaction-center-subunit-IV	gnl\|CDD\|367080	pfam02427, PSI_PsaE, Photosystem I reaction centre subunit IV / PsaE. PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains.	7.48909e-39
NC_010628.1\|WP_012410287.1\|4952763_4953348_-\|PAP/fibrillin-family-protein	gnl\|CDD\|309752	pfam04755, PAP_fibrillin, PAP_fibrillin. This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins.	1.79531e-78
NC_010628.1\|WP_012410291.1\|4957237_4957744_-\|molybdenum-cofactor-biosynthesis-protein-MoaB	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	5.62884e-67
NC_010628.1\|WP_012410278.1\|4941862_4942525_-\|Nif11-family-protein	gnl\|CDD\|369562	pfam07862, Nif11, Nif11 domain. This domain is found mainly in the Cyanobacteria and in Proteobacteria such as the nitrogen-fixing bacterium Azotobacter vinelandii. It is found in Nif11, a protein described in Azotobacter as linked to nitrogen fixation. It also constitutes a leader peptide in Nif11-derived peptides (N11P), which are thought to be post-translationally modified microcins derived from a putative nitrogen-fixing protein. N11P sequences have a classic leader peptide cleavage motif, usually Gly-Gly, which marks the end of family-wide similarity area and the beginning of a low-complexity region rich in Cys, Gly and Ser.	3.77939e-05
NC_010628.1\|WP_012410285.1\|4951143_4952019_-\|DNA-formamidopyrimidine-glycosylase	gnl\|CDD\|184410	PRK13945, PRK13945, formamidopyrimidine-DNA glycosylase; Provisional.	0
NC_010628.1\|WP_012410274.1\|4937950_4939084_-\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|226645	COG4177, LivM, ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism].	5.834e-47
NC_010628.1\|WP_012410292.1\|4957845_4958187_-\|photosystem-II-reaction-center-protein-Psb28	gnl\|CDD\|237446	PRK13612, PRK13612, photosystem II reaction center protein Psb28; Provisional.	3.17573e-72
NC_010628.1\|WP_012410283.1\|4949755_4950739_-\|malate-dehydrogenase	gnl\|CDD\|133424	cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	1.01883e-176
NC_010628.1\|WP_148220440.1\|4955348_4956905_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.28538e-52
NC_010628.1\|WP_012410284.1\|4950825_4951041_-\|NAD(P)H-quinone-oxidoreductase-subunit-O	gnl\|CDD\|371791	pfam11910, NdhO, Cyanobacterial and plant NDH-1 subunit O. The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. homologs of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 subcomplexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit. The three nuclear-encoded subunits NdhM,NdhN and NdhO are vital for the functional integrity of the plastidial complex.	7.08563e-40

>NC_010628.1|WP_012410281.1|4948340_4948823_+|hypothetical-protein
MNTIYKERKIVSRLFAVLLSALLMVPVLSSCGGGSQKASVPPPVDDTVGRTVSDRQTEAKKGLGTGQKVALLAGAAALYYMYNQHKNAPQEGAQGKYYLSKNGRVYYRDAEHRAHWVTPPPEGIRVPESEAQKYREFQGYNRSATGRDLTGITSSAAPAL
>NC_010628.1|WP_012410280.1|4947347_4948001_-|hypothetical-protein
MTSKNTAQTNTRLLLALWDLGGTQQEVKKGQLTKRIVSKSQKVADYQGSFEELQNQGAIAISKKGYSLTSPKGLEVLGEGLRSGKFKFEGTIVGTWAANALVKWISQIDVAVIGADVPVNGKSAIGSYGEFKSVALEVYDKLNQNYNLDDLVPIYRIRREIGDRVSREDFSEWLLEMQEKDILQLQGGSLPDNDPSKLEDSVTTEVSGLRCYAKLLN
>NC_010628.1|WP_012410279.1|4945423_4947283_-|hypothetical-protein
MSNDLINIISKHNPFEARLVVRDQNVWGQGFPDVPSLNSHVSDAVYNAIEKVNSGQRKVIGITITAERGLGKSHLISRIRHRLQFDGSALFVYMSQCNNLNRIKAEFLTTLATSLKQIGSQGVSQWQYLATALINEAFNKNYTAQQLINQFPGALVKNPKVVEVLRDKVLGIKPDLENPDIITAILWTLSPDPAYEIFAIRWLAGNSLPQVKADAMGLANVSADDKEAESFTTARQIINLIGDYKPIVVCFDEMETDHCNEIGYTGRQVTAIFAKDLCDKIKRGVLLTSIFPDHWINEVKRLGNADSVVDRIGEQVIELKYLNSDDVIDLVSRWLEEFYQEHTLTPPHALYPFDEQKLRALGKERPIVRKILKWCADNFKFPGIVIDRHPVEPAYNQQISALETTILDYMEDKATLAQALRLGFNAVIGETIENVKIEKVVDVEVKAVDRGYLDFKIVGTENGKNVKIAVAVLQESGGLFVQATLKRLIRYKDFDVTRGCLVRSKQINKGATKAQEHLKTLLSKELGGEWVLLKPEDIKPLLALHFVMKGREDDELSEEQIIDFIHQKQIAIDNYLVREILSDPSGQVPEDAIDEEIESTNITLTEVADGGSVSSGALF
>NC_010628.1|WP_052304635.1|4944218_4945418_-|DUF1802-family-protein
MINTALRLAAPEIEAFLQGRIIAAMPNKFITPGREFALCPSDASINLLPVEQYYRSSFLPIAQSAFAQLNIQGVLIQPQQMNLLIDEEQLKLPILAYETVLIKTWAKCELCQIINNTESFAALSQLTIWTTEALKEILRQKQNIFLAYLRVYELPKSIEVPIKSNSQFVALSQPLNVSEDKPVLKDRTFAQRKHQLEKLQPPLHPELEELQSAIASLSISQPAAKQLDDDIKVFLGWSSDKLTNPLDSDLPWIQNIAKVGNSSDGHTFEKLVRRGLLKLGFTGSGLNPDATGGAGGMDFYAEQPYPIVGECKATKTEKVTDGTPAQLLKIGMNHLGKFQYDNSIKLIVAAGELNFYALRTATENQMNIVSPETLQKLVELQAHYKNSINLLDLSGNKRE
>NC_010628.1|WP_012406904.1|4943302_4944196_-|transposase-family-protein
MLNIEGALKQDRLLRALTGLNRKAFDALLPTFTTMYLDTQQAKPRQRGLGGGRKARLLTAQDKLFFILFYFKCYPTFDVAGLLFDMHRSQAHEWMHRLQPILEAALGQKMALPERHLESIEAFLSRFPGVQRVMIDGTERPIARPQEREQQQQNYSGKKKRHTRKHLAAVDETKRVLILSKAREGKLHDKRFHDEDDIAGSVPDEIPIEVDSGFQGLQKQYDNLHLPHKKPKGGKLSDLQKTENRQLSQSRVVCENAFAGVKRYNAASVIYRNRIENFDDHLMLTAAGLWNFYLMAA
>NC_010628.1|WP_012410278.1|4941862_4942525_-|Nif11-family-protein
MYYQIWNFFLKEDKYIYWQEKIKFNKSYDKVTWQKVIDFLLLVEQTFQLKSQLAETNSLEPFLKLATENGCNLTAEELAWFLVTRRQIWDLFDFAQKTPSLKEELLISKDPQQFVNIAADNGYSFSVEELAWLLIEIKSSPEIVSINNSVGEILTGSNYGRIDIGYWIWLAEDWGIVPPFCHREKQGNLLFGDTNNPFLLDRCFLPKGYFNQRLLVSINS
>NC_010628.1|WP_012410277.1|4940006_4941593_+|glucose-6-phosphate-isomerase
MDARALWQRYQNWLYFHEGLGLYLDISRMRFDDAFVESLQPKFDKAFADMAELEKGAIANPDENRMVGHYWLRNPDLAPTPELTQEIVQTLEQIEAFAEKVQTGAIHPPRASRFTDIISIGIGGSALGPQFVAEALAPDFPPLKIHFIDNNDPAGIDRVLNHLRNSLASTLVLVISKSGGTPEPRNGMIEVKKAYAGHNLEFAQYAVAITSVDSNLDKLAKDEGWLARFPMYDWVGGRTSEMSAVGLVPAALQGIDVRAMLDGAKEMDDATRVPDVKNNPAALLALSWYFAGNGKGEKDMVVLPYKDSLFLFSRYLQQLVMESLGKEKDLDGNVVHQGIAVYGNKGSTDQHAYVQQLREGVANFFATFVEVLEDRQGPSTEIDPGVTSGDYLSGFLQGTRQALYENHRDSITVTIPQVNPRTVGALIALYERAVGLYASLVNVNAYHQPGVEAGKKAAASILDLQTRVVAVLQKEKTPISLDELAKKAGASDQIEAIYKILRHIHANQRGVVLQGDLHKPGSLTVSAS
>NC_010628.1|WP_175586605.1|4939649_4939895_+|cytotoxic-translational-repressor-of-toxin-antitoxin-stability-system
MRYARSFLLDLKNLEPAAYERVHDFVFVELAQKWQLSDLKELRQLDGEGIFHRFTLDNYLIGIEIRGEIVKFLRVIPMPDV
>NC_010628.1|WP_012410275.1|4939377_4939575_+|hypothetical-protein
MNLLRLRMHHLIEQLGDEDLQDIWNVLEALHCDFYMLKAIQQVKRSQQPWDILTHEEAVRLLMFF
>NC_010628.1|WP_012410274.1|4937950_4939084_-|branched-chain-amino-acid-ABC-transporter-permease
MVDYLIFLAISTALFALFGLGLNLQWGFTGLINFGHIAFMTLGAYTTVLLSLKGVPLLISAVAGAIVAALLGLIIGFATLRLREDYLGIVTIGTGELIRLVVNNQDLPVGDTWVSGAFGVQSYSIPLSTEPNLFVRLLMIGLLTLLAAVTFFTLWQWIRTTQISRTTDLGKRTTSKQEFVSRLAVGIVLAVLATAIYISGVIGLYNYNPKAGLMLVLLLVLALVYWRLEILVRSPWGRILKAIREDEEIPKALGKNVFWYKLQSLILGGAIAGIAGAFFAWQLSAIYPDNFQPQITFDTWIMVILGGSGNNVGTILGAVIFFAYDALTREVLPRIVHLDEARLGAFRIMVIGLILMILMIWRPQGILGKKEELTLGK
>NC_010628.1|WP_012410283.1|4949755_4950739_-|malate-dehydrogenase
MSSSPNSPIACNLPRVTIVGAGRVGSTLAQRVAEKNLADVVLLDIIAGMPQGLALDLMEARGIEIHNRQIIGTNNYADTSGSQIVVITAGLPRKPGMSRDDLLKTNAKIVVEAAKNAIAHSPNAIFIVVTNPLDVMTYLAWQATGLPRDRIMGMAGVLDSARFEAFIALELGVLPADVKAMVLGSHGDLMVPLSRYATVNGIPITELLDAATIERLIERTRNGGAEIVELMQTGGAFFAPASATSVMVESILLNQSRLLPVAAYLQGEYGLEDVVIGVPCRLGCGGIESVLELILSDEEREGLHTSAQSVRQNIERSQEILANKNNS
>NC_010628.1|WP_012410284.1|4950825_4951041_-|NAD(P)H-quinone-oxidoreductase-subunit-O
MAVKKGDMVRAIREKLENSLEAKASDTRFPPYLFDSKGEIVDIKGDYALIKFGKVPTPNVWLRVDQLEEFK
>NC_010628.1|WP_012410285.1|4951143_4952019_-|DNA-formamidopyrimidine-glycosylase
MPELPEVETVRKGLNQLTLNQEITGGDVLLNRTIAYPFSVGEFVDGIEKNAIATWHRRGKYLLAELSSPCSTSWLGVHLRMTGQLLWLHRDEPLHKHTRVRLFFGDQQELRFVDQRTFGKIWWVPPGVAVESIITGLAKLAADPFSPEFSVEYLASKLKNRRRPIKTALLDQSVVAGLGNIYADEALFKSGILPETLCIDLQLKQIELLRTAIIQVLETSIEAGGTTFSNFLNVKGTNGNYGGVAWVYNRAGEPCRVCGMPIQRIRLAGRSSHFCSECQTLRGVENRERRD
>NC_010628.1|WP_012410286.1|4952263_4952479_-|photosystem-I-reaction-center-subunit-IV
MVQRGSKVRILRPESYWFQDLGTVASIDQSGIKYPVIVRFEKVNYSGINTNNFAQDELVEVEAPKAKPAKK
>NC_010628.1|WP_012410287.1|4952763_4953348_-|PAP/fibrillin-family-protein
MMGKAALMDAIAGTNRGLLATEAQKQAILAAIANLEDFNPTPRPVEAGNLLDGNWRLLYTTSKALLNLDRLPFCKLGQIYQCIRVETTSVYNIAEIYGLPYLEGLVSVAAKFEPVSGRRVQVKFERSIIGLQRLIEYNSPVTFIQQIEAGKKFAGIDFAIKSDKQQGWLDITYIDNDLRIGRGNEGSVFILSKT
>NC_010628.1|WP_012410288.1|4953590_4953827_+|DUF3134-domain-containing-protein
MLNSPLREEPRNQRAHVIPLKPESSLLDWLENKGRIITRDVHDPDFQDGEEEIDSLMGVEDGIGYDLDDDDDIGIAED
>NC_010628.1|WP_012410289.1|4953906_4954998_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MDAKLSPEQGLNISGIALASLLAVGLGTTAFFLDSMANRLPWQSMSLTLPLLLCAMGSGVVGFWVIPLLQALKTGQIIREDGPQAHLKKAGTPTMGGIFFIPVGVIIACILSNFATDVLAVSALTTSYGFIGWLDDWQILRRKSNKGISPRTKLALQVGFAAVFCLWLMFNQPSNITNIALPWVSFTLPLGFLFWPLAGFVLVAESNATNLTDGIDGLAAGTVAIALLALGALIAPTAPGLMVFCAALSGGCLGFLAHNRNPARVFMGDTGSLALGGALAAVALLTNTLVALFILSGIFFVETLSVMAQVSYYKATKGPDGKGKRLFKMAPLHHHLELTGWSELQVVGVFYVIAAILAAICLA
>NC_010628.1|WP_148220440.1|4955348_4956905_-|diguanylate-cyclase
MAVSLLHLVVLDVMAFVSLSALLYLMPTAYQIVEAIAKYQEDTRELQRSQQMQRLFLDQGPFGAYIKDEQSRVLYYNQEIQSRFSVDSQEWFGKTDSEFLPDPEEGRRVMENDRVVLKTLRPLKLIEEIKMPGNNQPCYWLSFKFPFSDGATGDRRIGGISIDITESIEAQRSLTDLNRQLEEKTLKLEAKKRELIYLSDMADMLYCCESEDEMYQAVALTFSKLFPDMSGCICIIANSKNYVQMNSIWGDERIRTSKEIFSQSECWALRRGKFNLFSSGKSGLVCGHLIQPVSGTHLCVPLFGQGEVVGILHIYALENISPEDRQISEIIARTLGFALNNLSIKQRLTHENLRDGMTQLFNQSYMETITEQRLAEAERSGEPLSVIFLDIDNFKSYNSRYGHVTANIVIQELAKLLLKSIRSFDIPCRWGGEEFVIVMPNMTLEVLRKRAEQLRVDVEQMQLRDGDQILQGITASFGIAVSESGITVKDFLNRANQAMLEAKRTGKNRVMEYVNRYD
>NC_010628.1|WP_012410291.1|4957237_4957744_-|molybdenum-cofactor-biosynthesis-protein-MoaB
MTQQPHPDLLGITVTCAVVTVSDTRTPETDKSGQLIQQLLFGANYAVGAYTIIKDEPTQIQEQIENLGKSSNLDAVIFNGGTGIAPRDTTYDAIEKLLEKTLPGFGELFRFLSYQEIGSRAIASRAVAGVYQDKLIFSLPGSSNAVRLAMEKLILPELTHLVSQVCKA
>NC_010628.1|WP_012410292.1|4957845_4958187_-|photosystem-II-reaction-center-protein-Psb28
MAKIQFSRGLDEVVIPEVRLTRSRTGDSGTATFIFTNPKILDQGSTEDITGMYLSDEEGEIITREVKAKFVNGKPEALEALYVMKSAQEWDRFMRFMERYAEENDLGLSKAEK

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Crispr_ID: NC_010628_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_25

5588195-5588288

Orphan

A:N

Consensus_repeat	Method
TCGCGGCTACACAGACGAAACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_25

>merge|NC_010628|25|5588195-5588288|CRISPRCasFinder
TCGCGGCTACACAGACGAAACCCACCTCCGTGGGTTGAAGACAAATAAGTTTAATTCCCGGCGATTGGAAATCGTGGCTACACAGACGAAACCC

>NC_010628|25|24|5588195-5588288|CRISPRCasFinder
TCGCGGCTACACAGACGAAACCC	ACCTCCGTGGGTTGAAGACAAATAAGTTTAATTCCCGGCGATTGGAAA
TCGTGGCTACACAGACGAAACCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012410818.1\|5584752_5586351_-\|DGQHR-domain-containing-protein	unknown	unknown	gnl\|CDD\|274476
NC_010628.1\|WP_012410822.1\|5591317_5592775_+\|DNA-phosphorothioation-associated-putative-methyltransferase	unknown	unknown	gnl\|CDD\|274979
NC_010628.1\|WP_012410824.1\|5594204_5594615_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410812.1\|5578757_5580830_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274475
NC_010628.1\|WP_012410826.1\|5595010_5595517_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_010628.1\|WP_012410827.1\|5595690_5596449_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NC_010628.1\|WP_012410829.1\|5597140_5598484_-\|sorbosone-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|225044
NC_010628.1\|WP_012410817.1\|5583670_5584621_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410821.1\|5590865_5591252_+\|DNA-sulfur-modification-protein-DndE	unknown	unknown	gnl\|CDD\|378074
NC_010628.1\|WP_012410823.1\|5592918_5594193_+\|AmpG-family-muropeptide-MFS-transporter	unknown	unknown	gnl\|CDD\|341039
NC_010628.1\|WP_012410828.1\|5596620_5597025_-\|phosphomannose-isomerase-type-II-C-terminal-cupin-domain	unknown	unknown	gnl\|CDD\|380343
NC_010628.1\|WP_012410819.1\|5586533_5588159_+\|DNA-phosphorothioation-system-sulfurtransferase-DndC	unknown	unknown	gnl\|CDD\|235877
NC_010628.1\|WP_012410814.1\|5581406_5581958_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_010628.1\|WP_167315654.1\|5582649_5583651_+\|DGQHR-domain-containing-protein	unknown	unknown	gnl\|CDD\|274476
NC_010628.1\|WP_012410815.1\|5582126_5582585_+\|DNA-phosphorothioation-associated-protein-4	unknown	unknown	gnl\|CDD\|274953
NC_010628.1\|WP_012410810.1\|5576807_5578286_+\|DNA-phosphorothioation-system-restriction-enzyme	unknown	unknown	gnl\|CDD\|274978
NC_010628.1\|WP_012410825.1\|5594774_5594966_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410820.1\|5588822_5590808_+\|DNA-sulfur-modification-protein-DndD	unknown	unknown	gnl\|CDD\|274475
NC_010628.1\|WP_012410811.1\|5578587_5578761_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012410813.1\|5581031_5581370_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368559

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012410818.1\|5584752_5586351_-\|DGQHR-domain-containing-protein	gnl\|CDD\|274476	TIGR03187, hypothetical_protein, DGQHR domain. This highly divergent, uncharacterized domain has several absolutely conserved residues, including a QR pair and FxxxN motif. Its most striking feature, however, is a near invariant pentapeptide motif DGQHR. Several different subfamilies occur specifically as a part of DNA phosphorothioation systems, previously called DND (DNA instability during electrophoresis), while others (e.g. CPS_2936) occur in other contexts suggestive of lateral gene transfer (sporadic distribution of helicase-containing cassettes). The region described by this model is about 280 amino acids in length; additional sequences show local sequence similarity.	3.46457e-52
NC_010628.1\|WP_012410822.1\|5591317_5592775_+\|DNA-phosphorothioation-associated-putative-methyltransferase	gnl\|CDD\|274979	TIGR04096, conserved_hypothetical_protein, DNA phosphorothioation-associated putative methyltransferase. Members of this protein family show distant local sequence similarity to a number of S-adenosyl-methionine-dependent methyltransferases. The family is identified by Partial Phylogenetic Profiling as closely tied to the DNA phosphorothioation system (dnd), and members are found adjacent to dnd genes in at least 13 species (Streptomyces lividans TK24, Shewanella frigidimarina NCIMB 400, Mycobacterium abscessus ATCC 19977, Nostoc punctiforme PCC 73102, Vibrio fischeri MJ11, etc.). The DNA phosphorothioation enables a novel form of restriction enzyme activity. Most members of this family appear in species with the DNA phosphorothioation system. [DNA metabolism, Restriction/modification].	0
NC_010628.1\|WP_012410812.1\|5578757_5580830_+\|AAA-family-ATPase	gnl\|CDD\|274475	TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. [DNA metabolism, Restriction/modification].	7.39324e-32
NC_010628.1\|WP_012410826.1\|5595010_5595517_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.4524e-16
NC_010628.1\|WP_012410827.1\|5595690_5596449_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	1.43657e-27
NC_010628.1\|WP_167315654.1\|5582649_5583651_+\|DGQHR-domain-containing-protein	gnl\|CDD\|274476	TIGR03187, hypothetical_protein, DGQHR domain. This highly divergent, uncharacterized domain has several absolutely conserved residues, including a QR pair and FxxxN motif. Its most striking feature, however, is a near invariant pentapeptide motif DGQHR. Several different subfamilies occur specifically as a part of DNA phosphorothioation systems, previously called DND (DNA instability during electrophoresis), while others (e.g. CPS_2936) occur in other contexts suggestive of lateral gene transfer (sporadic distribution of helicase-containing cassettes). The region described by this model is about 280 amino acids in length; additional sequences show local sequence similarity.	5.5088e-73
NC_010628.1\|WP_012410821.1\|5590865_5591252_+\|DNA-sulfur-modification-protein-DndE	gnl\|CDD\|378074	pfam08870, DndE, DNA sulphur modification protein DndE. DndE is a small protein of 126 residues. It is a putative carboxylase homologous to NCAIR synthetase. It is encoded by an operon that is associated with a sulphur-based modification to DNA.	9.56606e-64
NC_010628.1\|WP_012410823.1\|5592918_5594193_+\|AmpG-family-muropeptide-MFS-transporter	gnl\|CDD\|341039	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.51611e-139
NC_010628.1\|WP_012410828.1\|5596620_5597025_-\|phosphomannose-isomerase-type-II-C-terminal-cupin-domain	gnl\|CDD\|380343	cd02213, cupin_PMI_typeII_C, Phosphomannose isomerase type II, C-terminal cupin domain. This family includes the C-terminal cupin domain of mannose-6-phosphate isomerases (MPIs) which have been classified broadly into two groups, type I and type II, based on domain organization. This family contains type II phosphomannose isomerase (also known as PMI-GDP, phosphomannose isomerase/GDP-D-mannose pyrophosphorylase), a bifunctional enzyme with two domains that catalyze the first and third steps in the GDP-mannose pathway in which fructose 6-phosphate is converted to GDP-D-mannose. The N-terminal domain catalyzes the first and rate-limiting step, the isomerization from D-fructose-6-phosphate to D-mannose-6-phosphate, while the C-terminal cupin domain (represented in this alignment model) converts mannose 1-phosphate to GDP-D-mannose in the final step of the reaction. Although these two domains occur together in one protein in most organisms, they occur as separate proteins in certain cyanobacterial organisms. Also, although type I and type II MPIs have no overall sequence similarity, they share a conserved catalytic motif.	1.49303e-45
NC_010628.1\|WP_012410819.1\|5586533_5588159_+\|DNA-phosphorothioation-system-sulfurtransferase-DndC	gnl\|CDD\|235877	PRK06850, PRK06850, hypothetical protein; Provisional.	0
NC_010628.1\|WP_012410814.1\|5581406_5581958_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.50671e-31
NC_010628.1\|WP_012410815.1\|5582126_5582585_+\|DNA-phosphorothioation-associated-protein-4	gnl\|CDD\|274953	TIGR04062, hypothetical_protein_CY0110_29519, dnd system-associated protein 4. A DNA sulfur modification system, dnd (degradation during electrophoresis), is sparsely and sporadically distributed among the bacteria. Members of this protein fam ily are strictly limited to species with the dnd operon, and are found close to the dnd operon on the chromosomes of species such as Nostoc sp. PCC 7120, Geobacter uraniireducens Rf4, and Roseobacter denitrificans OCh 114. [DNA metabolism, Restriction/modification].	3.39292e-68
NC_010628.1\|WP_012410810.1\|5576807_5578286_+\|DNA-phosphorothioation-system-restriction-enzyme	gnl\|CDD\|274978	TIGR04095, type_III_restriction_protein_res_subunit, DNA phosphorothioation system restriction enzyme. The DNA phosphorothioate modification system dnd (DNA instability during electrophoresis) recently has been shown to provide a modification essential to a restriction system. This protein family was detected by Partial Phylogenetic Profiling as linked to dnd, and its members usually are clustered with the dndABCDE genes.	0
NC_010628.1\|WP_012410820.1\|5588822_5590808_+\|DNA-sulfur-modification-protein-DndD	gnl\|CDD\|274475	TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria. [DNA metabolism, Restriction/modification].	0
NC_010628.1\|WP_012410829.1\|5597140_5598484_-\|sorbosone-dehydrogenase-family-protein	gnl\|CDD\|225044	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism].	7.02505e-91
NC_010628.1\|WP_012410813.1\|5581031_5581370_+\|hypothetical-protein	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	8.55684e-05

>NC_010628.1|WP_012410819.1|5586533_5588159_+|DNA-phosphorothioation-system-sulfurtransferase-DndC
MTTAQQTENKGQQTRTVAELVEDIKALTTEIQELYCLDQIPWVLGVSWGKDSSTVLQLVWNAIAALPPEKRTKTVYVITTDTQVENPVVSAWVRKSLQNLKIAAKEQGMPIDPHLLQPVIQDTFWVNLIGKGYPAPRNQFRWCTPRLKINPANQFIREIVRANGETILVLGTRKAESSKRAATMKKHQVDRVRDRLSPNASLPNSLIYTPIEDWSNNDVWIYLNQWNNPWGQSNKELFTMYRGATADNECPLVVDTSTPSCGDSRFGCWVCTLVSKDKSMEAMIQNDEEKEWMQPLLDIRNELDIKDDRDKRDFRRIWGEVQLFERNKDGKISVDPIPGPYTKYWREYWLKRLLEAQIKTRRTAPENMRDITLITLEEMSEIRRIWLEDKHEFDDSLPRIYQEVTGEEFQDPRPGADYSLLGRDEWIVLEEICEGDAMHLELMAKLLDTERQYRKKTRRVGIYETLEKCFNTSSRSPEDAIKNARLKRELSEAVSQGDVAKVKQMTLGDVAAINEVDEGQSESDEEVTWASMKFKKENSEE
>NC_010628.1|WP_012410818.1|5584752_5586351_-|DGQHR-domain-containing-protein
MKDSASDPTADIAREYLERENKEKQVLALLLEKFLGRKDQILVQKTEMGGTEAYVSSVTLEWFAGRVHFASGLPLFQKKYNPETDNVEIDADSIDEIQQRPLDWSRQAPLVQYLAARDNHKFPPVLVVINQPWVDNPKAAEWDSEGRATKSTTDFIPLDKDGKVGLLNISEDDVTIYALDGQHRLMGVQGLMELIKTRKLQRYKKDKGVDDSFITVNDLIEKYQVDLAYLQNLPKEKIGIEFICAVAAGETRTQARRRVRSIFVHVNLMAAPLTKGQLTQLNEDDGFAIVARKIAVTHPLLEQQQERKPRVNWNSATVASNSTVLTTLQALQDMSERYLAQKFPHWKPLEKGLIPMRPEDEELEQGIQEFSKLFDNLASLSSYKILEHEDTPALRRFSFEKDGGEGNMLFRPVAQVALAQALGILVFKKGFSLADIFKKLRKFDQQGGFSGMEYPQSLWYGILYDPNKKRVQVAGRDLAAKLLVYILGGIQEQMERAELRKALADARTVEDKTIGFDGKFVEPKAVGLPTVL
>NC_010628.1|WP_012410817.1|5583670_5584621_+|hypothetical-protein
MLNDISTTFNKKTRPGLSDRNFDVPLLKAIIYDQIKIYNRQYCIKVYLKDKITKYDGSDKVYSFVDQELKSVLLNEANLQFSKALYNWSIYKKLVSKGLWSWACVTLYYAQFYCINGLLNIQGNAFSRPKLLTNIGKEKETVFHVYTEDFAAGKFIFEMRNYKPHEDVWRQYYNVYKNYRYKISSYNELYQYDIDNQFAILEIRHRANYDTAFLLEDFIEYLLPTNELEDFALKMQPNIFETSWTEDEFLKLEYIASLRIKLLFDILHEILGISSHLETIRKDLYLERASMLNNLKDDTPVKDCFLNWIDENNIII
>NC_010628.1|WP_167315654.1|5582649_5583651_+|DGQHR-domain-containing-protein
MTNYIQLPAWEINHPGGKFYTFICDTETLLRIAYVSMEERNKTGVQRPLSERRCKEVAKFINSIDAVIANNIILNLPEETEYIPPNTESLTGILKFPDRENSAWVVDGQHRLFGFNYTEKRLNLLCTGFINIGIESQAKIFITINNEQKGINPSVIYDLLPLIKDADFKEKRTHSLVKQLNQDPESPWYNEIKMLGIGKGLVSQAAFARNIEILIDSNGGVLSPYNENLQYAILVNYFNAFKAVFSEEWGSSKYVLTKAVGLSAMCGIFPKVHSLCSKDFTVENIIKQIFNLQKFDFSSANLGKSTNKVAIQKITADLNKMLPEISDTSDIKI
>NC_010628.1|WP_012410815.1|5582126_5582585_+|DNA-phosphorothioation-associated-protein-4
MAANRIRVAKDKAELVKSLVASKDTTGPFQTYVEVMVFAAALGVKYKKRIPLDVISKDLSPLRQDYFTSSFTLLINLLAITETENIKILDDDNVADEQRIHIFEEYANGGLGIIQNELRGAVDYSERILLILISKRFDDSSIEEEFDLTKLL
>NC_010628.1|WP_012410814.1|5581406_5581958_+|Uma2-family-endonuclease
MSIKTEATIEDLYQLPDNCKAEIVNGKLVLMSPTGFLPGRAGGEIYASLRDYKRLTKSGYALPDNVGFIVNLPHHRSLSPDAAFYTGKPTGGKFLNGAPVFAAEVRSENDYGETAEKDMASKRRDYFAAGTLVVWDVDVLKEEVIRVYRASNPEEAQVYRRGEVVEAEPALPGWTMLVDNLFV
>NC_010628.1|WP_012410813.1|5581031_5581370_+|hypothetical-protein
MVASPDRNYMSPQEYLEWEERQEIKYEYIDGEVFAMTGETLQEYVLIDAEKIGLDCFRLNDRGLWELHPYEEGDEVHLTSADFHFPISLVYEDVQFVGKTNRRGAEDAERRE
>NC_010628.1|WP_012410812.1|5578757_5580830_+|AAA-family-ATPase
MKLTSIKLCNFRSFYGTTPEMIIAGGDAQNTTIIHGNNGSGKTSLLNAFTWVLYDKFSAAFASIEQLVNKRAIAETQKGQAVECWVEIGWEHEGKRYRVKRACRGYKNEGDFDAGKTQLTMWVGGDDGKWNIPIQQPDDIINQILPATLHQYFFFDGERIEEIVRSDKKAEIAEATKIFLGVEVINRSIRHLGDAKKTLENDLKAIGDSEIKQLLRQQEKIERERERITKRQTEIKEELEYQQTFKKETSNRLRELSAAKELQERWQDLESQKAANQEEYKKTKEALKKVISARGYTVLLSETTSQFRGIINDLKQRGELTSGISREFVNDLLNSQRCICGAELHEGNHSHTHVSTWLNKAGSSAVEETAIRMLAQVDEIDKQAIGFWEEVDREQTRINQLRQSISQIEGDLDNIQERLRKDANEEISSLQKRLDEIESKIDELNREQGANQQQIAQLTTEIEGLNKQIAKQKLNEDKQTLAQRRINATQDAIERLTEVRNRQEQQFRLQLEKRVQEIFTEISVTPYIPKISDKYELTLVENTTGVEAPVAASTGENQILSLSFIASIIDKVREWSEKRKMMMIPDSSTFPIVMDSPFGSLDENSRRHIAKTIPQLANQLIVLVTKTQWRGEVEAEITDRIGREYVLTYYSSKPDCEQDYIELSGERYPLVKQSPNEFEYTEIMEVERDR
>NC_010628.1|WP_012410811.1|5578587_5578761_+|hypothetical-protein
MSQEANIDDVQEPITSAPPEVRQIIERVWKLEKGRLDKKINSHVNDNILDIIKEEVR
>NC_010628.1|WP_012410810.1|5576807_5578286_+|DNA-phosphorothioation-system-restriction-enzyme
MYLTKNPVQQLPTFRLKLPFARESKGSYYTPQPLPGCPRMPPSLQLRQYQRQAIASWFTNNGRGTLKMATGSGKTITALAIACELYQQINLQVLLVVCPYRHLVTQWARECEKFNLQPILAFENLRTWQSQLSTQIYNLRSGSQRFVTVITTNSTLIGDGFQSQLKYFPAKTLIIGDEAHNLGAPKLEESLPRSVGLRLALSATPERYFDDFGTQSLFDYFGPVLQPEFTLRDAIAQGALVHYLYYPVLVELTEAESIAYLKLTKRIGRSLLYRDKENGESGFEDNEDLKPLLMQRARLIGAAENKLTALRDLMVTRRETSHTLFYCSDGSQDAGQRSSLRQLKAVAKILGVDLGYKVSTYTAQTTLQEREILRHQFESGELQGLVAIRCLDEGVDIPAIQTAVILSSSGNPRQFIQRRGRVLRPHPAKERATIFDMIVLPPDLDRETIEVERNLLKKELRRFVEFADLADNAGEARMKLLDLQKRYGLLDI
>NC_010628.1|WP_012410820.1|5588822_5590808_+|DNA-sulfur-modification-protein-DndD
MIFLELVLQNFGPYSGKQVINLNPKIDEETSHPIILLGGMNGGGKTTLMDAIRLALYGARAQCSTRGNLSYSDFLNQCVNNKIDPVADTRIELLFEHIENDKPIKYRVVRSWTKNPKDGKDTLGILGDSDTWPDALVNIWDEYIENLLPLGISNLFLFDGEQVKELAEQETPPPVVVDAIRGLLGLELADRLAVDLDILVNRKLKEVGNSKDLANLEEIETRLTQQQEDYQTTGEKLETLKNQVEELEQKQQEAFDKFISEGGKIAAERNQLELQQDTKTAEIEQVRQSMCELAADVLPLALIPNLLNQVQTQGEKEFRHQQVQISKDLLLKRDQRLLAWLNQVEISPIQVEKIQSFLIQDVDSLYAKTIQIEAAWLLADDESLSQLDNLIYHLQNSKISAKEKLAILKNKGEEIHTLERQVQTAAAPEDYTKLRQALETAQNQVVEAKANYETIRRRLAELETVIAKSKRELSDYTVENIKHKNSEHIITSAAKVQETLKTFREKLTLRKLNKLEEEVKNCFLYLLHKSDLVHRITIDTKTFSLLLYDLNGKPVPKHRLSAGEKQLLAIAFLWGLAKVSGHRLPVAIDTPLGRLDSSHRSNLVERYFPSASHQVILLSTDTEIGKKEVETLRENEAIAREYLLKYDSTTRQTTIQPGYFW
>NC_010628.1|WP_012410821.1|5590865_5591252_+|DNA-sulfur-modification-protein-DndE
MESPIERIKLSQTAKDQLTKLKRSTKIDQWNILCRWAFCRSLAEATTPSPVPIPQDSNVEMSWRVFGGEMSDILLLALKQRCHNDGYPTDKETLATQFRLHLHRGIGYLAGDPNIKKIEDLIELAVKN
>NC_010628.1|WP_012410822.1|5591317_5592775_+|DNA-phosphorothioation-associated-putative-methyltransferase
MPEALEIERHRAAIARIDISRPVRLAIEGSILNQDTTFFDYGCGYGGDVQRVKNLGYTSAGWDPYYYPDVPRTPADVVNLGYVLNVIEDSEERRQSLIQAWELTGKVLIVAAQILINAPSKTQFAYNDGIVTRRNTFQKYYEQQELKTYIDEVLNVDAVPIALGVYFVFRDEAEKESYKAIRFFSVTSTPRVRIPTKRFEDYQEQLQPLMAFFTKRGRLPVKGELENEQELLSEFGNFRRAFGVVLQATDEAEWDAIAYRRSLDIQVYLALTHFDKRPAWQKLAPEMRHDIKAFFSSYEEACQVADQKLFSLGKPGVIQNACEKSKIGKHTRGALYVHVSALAALDPVLRICEGCASRTIGRVDEATLIKYHTDKPQISYLSYPEFDTDPHPALKASIGIDLKTLFVTHRDYETRANPPILHRKETFVTSNYPRYEEFAKLTQQEQQLGLLNSKSDIGTREGWEKCLAAHRVEIRGHQVYSIKEN
>NC_010628.1|WP_012410823.1|5592918_5594193_+|AmpG-family-muropeptide-MFS-transporter
MQVNKSLLRIFGSQKMGALLFLGFSSGLPLYLTSQTLQAWLTKEGISLAAIAAFSLVKLPYSLKFLWSPLLDRFVPPFLGRRRGWLVITQVALLLSIAVMALQHPSQGLQPLIIAAVAVAFFSASQDILVDAYRTDVVEVEERGAGASIYLLGYRVAILVTGYVTLFLADRMPWQAVYLLMSLLMLVGLVSSIFAPEPVLRDRPPQTLGAAVKLPFIEFFQRHGWLQGLLILIFIVIYKLGDSLLKNVSTPFLLDKGLHFTQTDIAFPGALGIFATIVGTLAAGAIITKIGVNRSLWIFAILQAVGNLAFFALAVVGKNFYLMLAAVNIEQFCAGLETAAFVAFLMSLCNQSFSATQYALLSSLQAFSRDILTAPAGTWAQATGWSTFFLLTAIAALPGLLLLPFFAPWNPKPVVVLSRPGLDD
>NC_010628.1|WP_012410824.1|5594204_5594615_+|hypothetical-protein
MGNQVVIAVGTFILLLTGLLLGYVLSQLVLGFLAFNLLTFFGTLSLILIFGTLYYVLFWQLRRDQSRPSTINQGIPAQVDDGVSDSYLKNRLIAKLSGDTAAAERLIEQAKETYPGMPENWYCERVLDDLERDRGQ
>NC_010628.1|WP_012410825.1|5594774_5594966_+|hypothetical-protein
MAIFRQYIAPLLVVLVFVFALVAVSARIFLPSDMAAPAPIEEVGISSQPTPVNLPPTAQNSAS
>NC_010628.1|WP_012410826.1|5595010_5595517_+|GNAT-family-N-acetyltransferase
MIRRGSTLDRALLLKFMQRTYQDLFPNEDFSHLEQTVKQYFSSDTPLWWVEEEGEQGSRGAGEQGNNKKFLSSAPHPSIACLWVGNAIDQVQGNRHAHIFILYVVPEHRRRGIGTALMRYVENWAIQRGDRQIGLQVFQSNKPALNLYNQLGYQTQSLWMVKFLSAEK
>NC_010628.1|WP_012410827.1|5595690_5596449_+|HEAT-repeat-domain-containing-protein
MYDEDDLSLLDIEEELESPLDKIEPLTAESEVVKPDPEVMLALLENPQPQQRMLAARAFCDIEDARATPHLIRLLSDVCPLVRVSASYGLGRNPSSEAVSPLIAQLKSDWNGYVRKGVVWALGNCRDRRSLPPLADALRTDISAVRLWAASALAQMAEVGYEAVIGAIPPLIEALVKDPVAAVRSNSAWAIGQLCRELPSNVVYATAIDALIQAFAEDQDLGVREDAKASLLGVGDPRGLQLIETLEQEGWF
>NC_010628.1|WP_012410828.1|5596620_5597025_-|phosphomannose-isomerase-type-II-C-terminal-cupin-domain
MTPNENNTQSNINELPPHSGTRYWGEVEVIEEGDTYRISRVEIKPRHGIKPQIHYHRNEHWVVVSGVAKVTCGDAEILLNRNESTYVPAATLHKVENPGHIPLVILEIQNGEYLGEDDTERPYDLNLVKSVTEG
>NC_010628.1|WP_012410829.1|5597140_5598484_-|sorbosone-dehydrogenase-family-protein
MKVFARFLLPVFLLTLAAACNQTRASSDNPTPQISVPSAQLTQNPTQLKNTIRTEAFSPTPIRINLKNLPAPFATESASKRPEVVPIPQNPVLRVPAGFTVNVFAEGLDAPRWLALTPSGDVLVTETGQNRIRLLRDSNSDGVADVRETFASGDNGLNRPFGMAFADNSFFLGNTDAVVRFPYTQGQNKITGKGEKIADLPSQGYNNHWTRNVVVSPDRNKLYVSVGSGTNVDEEPLPRASIQVMNLDGSQQQTFASGLRNPVGLDFHPITKELYATVNERDGIGDDLVPDYLTRVKQGAFYGWPYAYLTPNNLDPRQKTDGKSKRPELAARTQTPDVLFQAHSAALGLQFYDGKTFPEKYRNGAFAAFRGSWNRDRGTGYKIVFVPFDAKGRSLGYYEDFLTGFLLNPSVPTTWGRPVGLLVLPDGSLLLTEEANNRIYRIQYTGG

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Crispr_ID: NC_010628_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_26

6775105-6775202

Orphan

A:N

Consensus_repeat	Method
CTCCTTTCTCTACGAGAGGCTGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_26

>merge|NC_010628|26|6775105-6775202|CRISPRCasFinder
CTCCTTTCTCTACGAGAGGCTGCGCCCTAAGCGTAGCTATGCCGCAGGCTTTATGACTGCGCTACCTCGGCTCCTCCCTTCTCTACGAGAGGCTGCGC

>NC_010628|26|25|6775105-6775202|CRISPRCasFinder
CTCCTTTCTCTACGAGAGGCTGCGC	CCTAAGCGTAGCTATGCCGCAGGCTTTATGACTGCGCTACCTCGGCTC
CTCCCTTCTCTACGAGAGGCTGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012411741.1\|6778352_6778571_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012411729.1\|6766554_6766800_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012411730.1\|6766851_6767985_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NC_010628.1\|WP_012411728.1\|6765535_6766264_+\|GUN4-domain-containing-protein	unknown	unknown	gnl\|CDD\|368432
NC_010628.1\|WP_012409221.1\|6779977_6781288_+\|IS701-like-element-ISNpu5-family-transposase	unknown	unknown	gnl\|CDD\|227946
NC_010628.1\|WP_012411742.1\|6781768_6782032_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012411739.1\|6777269_6777650_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NC_010628.1\|WP_012411727.1\|6763841_6765263_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180944
NC_010628.1\|WP_012411736.1\|6775315_6776248_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_010628.1\|WP_041565676.1\|6766274_6766547_+\|BrnT-family-toxin	unknown	unknown	gnl\|CDD\|367913
NC_010628.1\|WP_012411738.1\|6776800_6777232_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240044
NC_010628.1\|WP_041565677.1\|6769143_6771954_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_010628.1\|WP_012411734.1\|6773361_6774096_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|223434
NC_010628.1\|WP_083782443.1\|6781186_6781675_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_010628.1\|WP_012411740.1\|6777615_6777891_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NC_010628.1\|WP_167315667.1\|6778764_6779844_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238121
NC_010628.1\|WP_012411735.1\|6774173_6774848_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224047
NC_010628.1\|WP_012411737.1\|6776339_6776792_+\|DUF3531-family-protein	unknown	unknown	gnl\|CDD\|371866
NC_010628.1\|WP_012411731.1\|6768095_6768875_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NC_010628.1\|WP_012411733.1\|6771972_6773292_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|381147

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012411730.1\|6766851_6767985_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	4.14971e-164
NC_010628.1\|WP_012411735.1\|6774173_6774848_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224047	COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism].	2.03232e-67
NC_010628.1\|WP_012411728.1\|6765535_6766264_+\|GUN4-domain-containing-protein	gnl\|CDD\|368432	pfam05419, GUN4, GUN4-like. In Arabidopsis, GUN4 is required for the functioning of the plastid mediated repression of nuclear transcription that is involved in controlling the levels of magnesium- protoporphyrin IX. GUN4 binds the product and substrate of Mg-chelatase, an enzyme that produces Mg-Proto, and activates Mg-chelatase. GUN4 is thought to participates in plastid-to-nucleus signaling by regulating magnesium-protoporphyrin IX synthesis or trafficking.	1.00251e-88
NC_010628.1\|WP_012409221.1\|6779977_6781288_+\|IS701-like-element-ISNpu5-family-transposase	gnl\|CDD\|227946	COG5659, COG5659, FOG: Transposase [DNA replication, recombination, and repair].	3.01338e-84
NC_010628.1\|WP_012411739.1\|6777269_6777650_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	6.40866e-17
NC_010628.1\|WP_012411727.1\|6763841_6765263_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180944	PRK07362, PRK07362, NADP-dependent isocitrate dehydrogenase.	0
NC_010628.1\|WP_012411736.1\|6775315_6776248_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.48581e-07
NC_010628.1\|WP_041565676.1\|6766274_6766547_+\|BrnT-family-toxin	gnl\|CDD\|367913	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system. BrnT is a ribonuclease toxin of a type II toxin-antitoxin system that exhibits a RelE-like fold. The antitoxin that neutralizes this toxin is pfam14384. BrnT is found in bacteria, archaea, bacteriophage, and plasmids. BrnT-BrnA forms a 2:2 tetrameric complex and autoregulates its own expression, which is induced by a number of different environmental stresses. Expression of BrnT alone results in cessation of bacterial growth which can be rescued after subsequent expression of BrnA.	2.34619e-32
NC_010628.1\|WP_012411738.1\|6776800_6777232_+\|NUDIX-hydrolase	gnl\|CDD\|240044	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.1694e-36
NC_010628.1\|WP_041565677.1\|6769143_6771954_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.82614e-97
NC_010628.1\|WP_012411734.1\|6773361_6774096_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	1.44259e-78
NC_010628.1\|WP_083782443.1\|6781186_6781675_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	7.68958e-28
NC_010628.1\|WP_012411740.1\|6777615_6777891_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	1.76023e-07
NC_010628.1\|WP_167315667.1\|6778764_6779844_-\|hypothetical-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.62925e-45
NC_010628.1\|WP_012411737.1\|6776339_6776792_+\|DUF3531-family-protein	gnl\|CDD\|371866	pfam12049, DUF3531, Protein of unknown function (DUF3531). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 149 to 199 amino acids in length.	2.50025e-94
NC_010628.1\|WP_012411731.1\|6768095_6768875_+\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	5.14511e-110
NC_010628.1\|WP_012411733.1\|6771972_6773292_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.93804e-54

>NC_010628.1|WP_012411735.1|6774173_6774848_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MLYLRNVNYHPTACPTAILKSINLELAPQQLGLIIGPSGSGKSTLLEILSGLAEPTTGALFWREQELIAEQLQQLAGLVFQFPERHFCGGSILEELRLGHPELGSERVRQALTEVGLEHLSLSAAPHALSGGQQRRLALAVQLIRQPNLLLLDEPTAGLDWSMRRQLVNLLAKLKQDWTLLVVTHDAGDLLAIADRCWTLNHGELQSVDPKTLEAKVKEPLPSV
>NC_010628.1|WP_012411734.1|6773361_6774096_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTNLLPEMAEIWQQTLNWQPTVQQQEQFQRLYELILEGNRQLNLTRITDPQEFWEKHLWDSLRGILPLLSGNLPPASPTIIDIGTGAGFPGVPVAMTVPNCTITLLDSTQKKITFLDNILTELALTNTKTIVGRAEKIGQHPQHRMAYDIALIRAVGAVSVCAEYTLPLLKQGGLAIIYRGNWTKDETTALQNAVKLLGGVIESIEQFTTPLSHSIRHCVYLRKVATTPVQFPRPIGVPTQKPL
>NC_010628.1|WP_012411733.1|6771972_6773292_+|hybrid-sensor-histidine-kinase/response-regulator
MANDGKGQTILIIDDHPTNIEVLYDALDQAGYKVLVEMDGWHGIETVKSYPPDLILLDVMMPGIDGFETCRQLKSQQTTCEIPIIFMTALNDTTDKVKGLGLGAVDYITKPFQQEEVLARIGIHLKLRRANLELAQQKDILEQRVQERTTELSQALDNFKNAQLQLVQSEKMATLGNLVAGVAHEINNPLGFLKGSMNNTEEYIQDLFNYVQCVQQHHPLLAPDVTNLAEKIDLEFLCEDLPKLLDSMRVATERITDISTSLRTFSRADTCEKVACNLHEGIESTLLILKYRLKASQKRPTIEVITDYGKLPPVKCFLGQLNQVFMNILANAIDVLDTESVGRTFAELEANSQQIIIRTEVSSDQNTVVIRIKDNGSGMPEDIKLRIFDHLFTTKEVGKGTGLGLAIARQIVEETHNGKLICNSILGEGTEFIIKIPVS
>NC_010628.1|WP_041565677.1|6769143_6771954_+|hybrid-sensor-histidine-kinase/response-regulator
MPSNNKNSPNKGNLPLRLVLVLPFVLQIFAAVGLTGYLSLRNGQQAVNDLASRLQREVSDRIDQHLDSYLNTARQLAEINGDAIDLKLLDTQDLEQLGHFFWKQMQLYNVGYISFGSKISEFASSGKFFDDGRITVSEVSQRRNGDRDEHLYNADAQGNRVSLAIVNKNYNFAKESWYADTVKAGKPIWSKIYQWETSPETLSVSANRPVYDRDKNLIGVIGIDQRLSQISNFLRSLKASPSAKTFILERNGLIVASSSTEQPYKLINGKPKRLQASDSSDLLIRAATTHLIEHLGNFSNIKENQQLDFILNHERQFVQVTPWRDEWGLDLLVVVAVPESDFMGQINANTHTTILLCLGALTLATILGVYTSRWIARPILHLSQASESIAAGELNQQVEIPSVNELGRLAQSFNRMAQQLRDSFTTIEQTNQQLAKTNEELESRVEERTHELKEAKLTADAANHAKSDFLANMSHELRTPLNGILGYAQILARTASDEKQQRGIDIIYQCGSHLLTLINDILDLSKIEAGKLELQLVPFYLPAFLQSVVEICRIKAEQKSIEFIYQPPENSAMGIVADEKRLRQVLINLLGNAIKFTDKGSVTFRVEVLLGDITNLRFYIQDTGIGMSPQQLEKIFLPFEQVGDSKRQSEGTGLGLAISQRFVELMASKIQVESQLGVGSKFFFNIDCAIATDWVQANSLTSSGRIIGYAGVGKTSVKENRKKILIVDDRWENRSVIVNLLEPLGFEVIEASNGQEGLEKITRDRPDTIICDLAMPVMDGWEMLKQLRQSETLRDAIVIVSSASVFENDRQKSLDAGGNDFLAKPVQADELYAVLAKQLQLDWIYKDTNIKYPIDTAASTKTIVIPSSSDLKGLLEHVETGYFRGIREELDRLAQLDEQYQPFIRELRELVKGFNIQTVRHFLQESINQSQESTKI
>NC_010628.1|WP_012411731.1|6768095_6768875_+|superoxide-dismutase
MAINRRNFLFLLTAGAGAFALDACASAEKSPNGNTATPETTPNTRLNKTSDKPGAIQLPPLAYAYEALEPHIDAKTMQFHHDKHHATYVKNLNAALDKHPELKGKTIEELLQKLDSVPQDIRRTVRNNGGGHVNHSMFWEIMKPKGGGEPTGNIASAINQSFGSFAAFKKQFNEAGASRFGSGWVWLVRNKGGKLEVTTTANQDSPLSTGKYPILGNDVWEHAYYLNYQNRRADYLDAWWNVVNWDEINKRFAAANKFA
>NC_010628.1|WP_012411730.1|6766851_6767985_+|ABC-transporter-ATP-binding-protein
MANVRLEDIKRRFNNVTAIEDITFEIPDGEFWVLVGPSGCGKSTILRTIAGLETATSGKLFIGDRLVNNIPARQRDVAMVFQNYALYPHMSVAQNIGFGLQMRKVDRKIIQERVMNVARSLSLDHLLDRKPKQLSGGQQQRVALGRAIAREPQVFLLDEPLSNLDAQLRDDTRAELKQLHQELGITTIYVTHDQVEAMTLADKIVVLNRGRIQQIGDPQTIYASPANQMVATFLGSPPMNILPAIYHNNGFDVSGQLLTIPAVVKEKLQLRQEHSYDLGIRPEHIFINERPSGFTVAYNAGSPNRQEENESQLIVEVKVVEPLGRETLIRAGLPGSAVVLNIQVGADVRPRPGDRLSLQLDLNHLFVFDPKTGDRIL
>NC_010628.1|WP_012411729.1|6766554_6766800_+|hypothetical-protein
MEDDLRSEYDLKSLRVRKFGPERKSFGKTTIRLEPDVAEVFPNADAVNEALRFLIRVVQGNQVSALAKQPHDSSEGADKTS
>NC_010628.1|WP_041565676.1|6766274_6766547_+|BrnT-family-toxin
MKFEWDENKAAINLLKHQVSFEEAKTVFDDPLYVDFYDPDHSDNEERYLIIGESSRGRLLIMSYTERGNSIRLISAREVTRSEREAYKEG
>NC_010628.1|WP_012411728.1|6765535_6766264_+|GUN4-domain-containing-protein
MTDPMILSGPANDIDSLRRPLMAGSEKVQQQIIPQLAELGNEGLDVLMEFLLKRRENPATWVDGKAYQVLYNSDAPQAKEFLRSSFPEGIVPLKSECGINYNSLQQLLAAQDFQAADRVTIEKMCELSGTTAVQRKWLYFTEVENTSAVDLQTINNLWLVHSEGKFGFSVQREIWLSLGKNWENFWPKIGWKAGNNWTRYPNGFTWDLSAPRGHLPLSNQLRGVRVFASLLSHPAWSKNPEK
>NC_010628.1|WP_012411727.1|6763841_6765263_-|NADP-dependent-isocitrate-dehydrogenase
MYEKITPPAAGAKIAFKNGEPIVPDNPIIPFIRGDGTGIDIWPATQKVLDAAVAKAYKGQRQISWFKVYAGDEACDLYGTYQYLPQDTLTAIEEYGVAIKGPLTTPVGGGIRSLNVALRQIFDLYACVRPCRYYAGTPSPHKNPEKLDVIVYRENTEDIYLGIEWRQGSEIGDRLIKILNEELIPATPEHGKKRIPLDSGIGIKPISKTGSQRLVRRAIKHALLLPKNKQQVTLVHKGNIMKYTEGAFRDWGYELATSEFRQETVTEQESWILSNKEKNPNISLEENARQIEPGFDNLTPDKKAQVVKEVETVLNTIWATHGDGKWKEKVLVNDRIADSIFQQIQTRPDEYSILATMNLNGDYLSDAAAAIVGGLGMGPGANIGDSSAIFEATHGTAPKHAGLDRINPGSVILSGVMMLEFLGWQEAADLIKKGLSDAIANSQVTYDLARLLEPPVEPLKCSEFADAIIQHFG
>NC_010628.1|WP_012411736.1|6775315_6776248_+|tetratricopeptide-repeat-protein
MTKRFSSPQLLVPTRLTILAQTAFGAAIALNLWVNPSLAGDPFRNSEPHQIGDQTEAAFKAIFQQGNYPAAERYLEQAISKEPNEPLAYAMKASLAYGNKDWAKLDTYSQKTLETGQKLIPNDPLRGNLYTAVGHFLEGAVILTREGTVNGVPQAFSRLRQVYEYLDKAEAISANDPELNLIKGYMDLLLAVNLPFASPDQSIGRLEKNAAPGYLVDRGIALAYRDLKRYPQALEYVNRALKTTSDNPEIYYLKAQILKELGQKEKSQQMIQEAIANFDKALTKKSQLPSDLVKQIESERKNAVSLKNPG
>NC_010628.1|WP_012411737.1|6776339_6776792_+|DUF3531-family-protein
MEIQFREINPFDMWIWLKFSTNPSAREKQYVEEVFNSWFYLGKLGAFNAENLQVQDTGLDISYMNYDEQGYDKSLLALMHNIGEFEYEGQWGRCWFDLGTSDAIALDILINALTQLSQEYVTIEQLYIGGENPDWPIEDSESRPQSIYDN
>NC_010628.1|WP_012411738.1|6776800_6777232_+|NUDIX-hydrolase
MGKAGEIRVIALGLIRDGERIFVSEGYDPVKQETFYRALGGGVDFGETSHAALKREFQEEIQAELTNIKYLGCIESLFTFNGKQGHEIVQLYQCDFVDSKFYQLESLIFSESQHHKHKALWMDISRFKSGELRLVPEVFFEYL
>NC_010628.1|WP_012411739.1|6777269_6777650_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKTLNQKNQQIEKPSLEYYLNLQYSIILYPDPEGGYVAQIKDLPGCLTQGETLEETVANLNEARELWIETAYEAGDDIPLPSSNDSYSGKLLLRMPKSLHRRLAETSEREGVSLNQYIVSLLSAVT
>NC_010628.1|WP_012411740.1|6777615_6777891_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MSKLRKLVDQFLKQPPEVRSQEVYYLLEAFGFEEKKSKGSHHSFRDSQGKTITVPKTGGQKVKGVYVQQIVELLNLEEWIDEDTEPEEPAD
>NC_010628.1|WP_012411741.1|6778352_6778571_-|hypothetical-protein
MTELLEQAIAKLKNLPANEQDAIAAMILAELEDERRWDEAFARSPDMLAKLAAEAMAEYRAGKTQELDPDKL
>NC_010628.1|WP_167315667.1|6778764_6779844_-|hypothetical-protein
MQSVSVSPDGSLIASGGCDRKVKIWRTNIHDEVFSFSTHSKDVRVVVFSPDGKILASSDDDGDIILWDMQTGLSKCTIQGHSSSVRSLGFSTNGQLLVSGGDDGYVKIWNLTTGTLDSSFCAHSAGVSSVAFCFNNQVLVSSSWDKTVKVWVLETAIPKPSKIGFFKGLFGKKQSEPELIPSLPNFILQQVQGNSEKLNESMFSSVGANFETEAYSFCWETSQPPVKNPQLGLEDWERLLRDWKRQEEERKKEQRAKERLRLREQRLRLEKQKEERLNREQQLQAEKLRQEQRQQEEKPKQVNQNRTTNNYRDNSTSNQQRTTTNFWGSNSSSNSSGKVYVQGYRRKDGTHVEGYWRNK
>NC_010628.1|WP_012409221.1|6779977_6781288_+|IS701-like-element-ISNpu5-family-transposase
MVEPRSPIKTVKFVDEYCLWYKNLFSDVRNFEAFKYLHIGCISDLKRKSLPEIAKIVGLDNYQGLHHFLTTPSWSVEQLRALRLQLILEVLKGRPIILIIDETGDKKKGNTTDYVKRQYIGNLGKVENGVVAVTAYGMFCGMTFPLLFEVYKPREKLKPGDKYLTKPQIGAMLIRKLQLMGFKFNLVLADSLYGESSTNFIPVLDELDLNYLVAIRSNHSVALLKGQYTQYLNWHKFKRVFSDLSSENRFIREIIHGKRSNHRYWQITTDTLNLPGNSTWYVMSKYPDITPREVGNFYGFRTWVEYGLKQSKNQLGWADYRFTCYEDIERWWEIICSAYLMVSLHSESLRPYPLDSQSTFASHQRWDNGKGWKNILNNLRLILQPFTLFNLIQPWLSVFPIPHLSLGFAKLQSVVYYLTYPTFISLTDPDFYFSSA
>NC_010628.1|WP_083782443.1|6781186_6781675_-|hypothetical-protein
MNQSWYPAHTFNGDSSWFGGVRSLSINPSRQIIGCGSDDNTIRLWDLNNGQLLSYPFEHTKSVRSISFTPKGNGLISGGDDATIRVWDLRTSQELLTFNAHSQPVTAVAVVPIYDFVVSGSDDYPCCVTLGRGKIEIRVSQGYKSRIGKVINNRLEFSKSQR
>NC_010628.1|WP_012411742.1|6781768_6782032_-|hypothetical-protein
MIKTIEGIYQDGQIHLTQLPQDISDRSQVLVTFLDPGKIVPTKLCQPIDQLETIAGIGQGFEELNAGNTRPIENFVQEMQQKYGISG

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Crispr_ID: NC_010628_27

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_27

6982665-6983554

TypeV-U5

A:N

Consensus_repeat	Method
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	CRISPRCasFinder
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	CRT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	PILER-CR

12 spacers

c2c5_V-U5

The CRISPR arrays of NC_010628_27

>merge|NC_010628|27|6982665-6983554|CRISPRCasFinder,CRT,PILER-CR
ATGATAACCCACCTAGTACCTGGCAGGTTATTAAAACATTTTTGTATGCGTGCGTAATGATTTCAGATTTGCCTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCACCAGGAGGCATCTAGAGGAATCCGATGGATGGTTCTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCACACCATTAATCGCCATCCGCCAGATAGAATCCAATCTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCACATTCAAGATTATTTGGGGCATCGGAATATTAATCACTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCACGCAGAGCTTCTTCCCGGATGTTTTGAAGTTCGCCCTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCACACCAGGATTACCAATACACTCAGCAGTAAAACAACTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCACCGGTAAGCTTATTCTCATCAAAAGTGACATCCTCTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCACGGACGTAACGAAAAAGGTATTCGCGAAAAGTTCTGCTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCACTATTAAGTGCTGTAGCAAATTCAGGTAATCTATCCTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCACTTCCGCACCGTTGTGGAACATGCCGTCGTTACTCTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCACATTAGGAGTGCAATGCCAGCGAAATACACACATTGGCTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCACATCCCATCGCATCTGCTATCCCCTGAGTAGCGCCTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC

>NC_010628|27|26|6982665-6983554|CRISPRCasFinder
ATGATAACCCACCTAGTACCTGGCAGGTTATTAAAAC	ATTTTTGTATGCGTGCGTAATGATTTCAGATTTGC
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	CAGGAGGCATCTAGAGGAATCCGATGGATGGTT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ACCATTAATCGCCATCCGCCAGATAGAATCCAAT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ATTCAAGATTATTTGGGGCATCGGAATATTAATCA
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	GCAGAGCTTCTTCCCGGATGTTTTGAAGTTCGCC
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ACCAGGATTACCAATACACTCAGCAGTAAAACAA
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	CGGTAAGCTTATTCTCATCAAAAGTGACATCCT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	GGACGTAACGAAAAAGGTATTCGCGAAAAGTTCTG
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	TATTAAGTGCTGTAGCAAATTCAGGTAATCTATC
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	TTCCGCACCGTTGTGGAACATGCCGTCGTTACT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ATTAGGAGTGCAATGCCAGCGAAATACACACATTGG
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ATCCCATCGCATCTGCTATCCCCTGAGTAGCGC
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC

>NC_010628|27|5|6982665-6983554|CRT
ATGATAACCCACCTAGTACCTGGCAGGTTATTAAAAC	ATTTTTGTATGCGTGCGTAATGATTTCAGATTTGC
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	CAGGAGGCATCTAGAGGAATCCGATGGATGGTT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ACCATTAATCGCCATCCGCCAGATAGAATCCAAT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ATTCAAGATTATTTGGGGCATCGGAATATTAATCA
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	GCAGAGCTTCTTCCCGGATGTTTTGAAGTTCGCC
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ACCAGGATTACCAATACACTCAGCAGTAAAACAA
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	CGGTAAGCTTATTCTCATCAAAAGTGACATCCT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	GGACGTAACGAAAAAGGTATTCGCGAAAAGTTCTG
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	TATTAAGTGCTGTAGCAAATTCAGGTAATCTATC
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	TTCCGCACCGTTGTGGAACATGCCGTCGTTACT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ATTAGGAGTGCAATGCCAGCGAAATACACACATTGG
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ATCCCATCGCATCTGCTATCCCCTGAGTAGCGC
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC

>NC_010628|27|7|6982737-6983554|PILER-CR
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	CAGGAGGCATCTAGAGGAATCCGATGGATGGTT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ACCATTAATCGCCATCCGCCAGATAGAATCCAAT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ATTCAAGATTATTTGGGGCATCGGAATATTAATCA
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	GCAGAGCTTCTTCCCGGATGTTTTGAAGTTCGCC
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ACCAGGATTACCAATACACTCAGCAGTAAAACAA
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	CGGTAAGCTTATTCTCATCAAAAGTGACATCCT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	GGACGTAACGAAAAAGGTATTCGCGAAAAGTTCTG
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	TATTAAGTGCTGTAGCAAATTCAGGTAATCTATC
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	TTCCGCACCGTTGTGGAACATGCCGTCGTTACT
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ATTAGGAGTGCAATGCCAGCGAAATACACACATTGG
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC	ATCCCATCGCATCTGCTATCCCCTGAGTAGCGC
CTTTCAACCCACCCAGTACCTGGAGGGTTGTTGCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_041566469.1\|6966477_6966849_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012411910.1\|7000119_7000722_-\|DUF1819-family-protein	unknown	unknown	gnl\|CDD\|378066
NC_010628.1\|WP_012411894.1\|6975425_6976046_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_010628.1\|WP_012411896.1\|6977879_6978638_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NC_010628.1\|WP_012411902.1\|6985999_6986452_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NC_010628.1\|WP_012411897.1\|6978785_6980132_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NC_010628.1\|WP_012411903.1\|6986740_6987388_+\|DUF1788-domain-containing-protein	unknown	unknown	gnl\|CDD\|378040
NC_010628.1\|WP_012411898.1\|6980661_6982233_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277324
NC_010628.1\|WP_041565690.1\|6977499_6977688_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012411892.1\|6966994_6969190_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NC_010628.1\|WP_012411907.1\|6994928_6995345_-\|XisH-family-protein	unknown	unknown	gnl\|CDD\|370136
NC_010628.1\|WP_012411904.1\|6987384_6990924_+\|BREX-system-P-loop-protein-BrxC	unknown	unknown	gnl\|CDD\|380283
NC_010628.1\|WP_012411901.1\|6983999_6985919_-\|type-V-CRISPR-associated-protein-Cas12k	c2c5_V-U5	-	unknown
NC_010628.1\|WP_012411905.1\|6990988_6994525_+\|BREX-1-system-adenine-specific-DNA-methyltransferase-PglX	unknown	unknown	gnl\|CDD\|380294
NC_010628.1\|WP_012411893.1\|6969865_6975295_+\|LamG-domain-containing-protein	unknown	unknown	gnl\|CDD\|379155
NC_010628.1\|WP_012411909.1\|6998104_7000123_+\|protease-Lon-related-BREX-system-protein-BrxL	unknown	unknown	gnl\|CDD\|131701
NC_010628.1\|WP_012411895.1\|6976049_6977309_-\|FAD-dependent-hydroxylase	unknown	unknown	gnl\|CDD\|236001
NC_010628.1\|WP_012411906.1\|6994587_6994941_-\|XisI-protein	unknown	unknown	gnl\|CDD\|370165
NC_010628.1\|WP_012411908.1\|6995445_6998013_+\|BREX-1-system-phosphatase-PglZ-type-A	unknown	unknown	gnl\|CDD\|274259
NC_010628.1\|WP_012411890.1\|6965277_6965562_-\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|377265

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012411910.1\|7000119_7000722_-\|DUF1819-family-protein	gnl\|CDD\|378066	pfam08849, DUF1819, Putative inner membrane protein (DUF1819). These proteins are functionally uncharacterized. Several are annotated as putative inner membrane proteins.	1.26093e-33
NC_010628.1\|WP_012411894.1\|6975425_6976046_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.64146e-33
NC_010628.1\|WP_012411896.1\|6977879_6978638_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	3.45406e-147
NC_010628.1\|WP_012411902.1\|6985999_6986452_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.08353e-15
NC_010628.1\|WP_012411897.1\|6978785_6980132_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.60752e-104
NC_010628.1\|WP_012411903.1\|6986740_6987388_+\|DUF1788-domain-containing-protein	gnl\|CDD\|378040	pfam08747, DUF1788, Domain of unknown function (DUF1788). Putative uncharacterized domain in proteins of length around 200 amino acids.	8.72544e-55
NC_010628.1\|WP_012411898.1\|6980661_6982233_-\|metallophosphoesterase	gnl\|CDD\|277324	cd07378, MPP_ACP5, Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	3.61582e-06
NC_010628.1\|WP_012411892.1\|6966994_6969190_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	3.73335e-63
NC_010628.1\|WP_012411907.1\|6994928_6995345_-\|XisH-family-protein	gnl\|CDD\|370136	pfam08814, XisH, XisH protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	2.56153e-83
NC_010628.1\|WP_012411904.1\|6987384_6990924_+\|BREX-system-P-loop-protein-BrxC	gnl\|CDD\|380283	NF033441, BREX_BrxC, BREX system P-loop protein BrxC. BrxC is a P-loop-containing protein, and probable ATPase, from BREX (bacteriophage exclusion) systems of type 1.	0
NC_010628.1\|WP_012411905.1\|6990988_6994525_+\|BREX-1-system-adenine-specific-DNA-methyltransferase-PglX	gnl\|CDD\|380294	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX. This protein, PglX, is a site-specific DNA methyltransferase associated BREX (bacteriophage exclusion) type 1 systems. The phage resistance appears not to be through restriction-modification, as phage DNA appears not to get degraded, but it does manage to inhibit phage replication.	0
NC_010628.1\|WP_012411893.1\|6969865_6975295_+\|LamG-domain-containing-protein	gnl\|CDD\|379155	pfam13385, Laminin_G_3, Concanavalin A-like lectin/glucanases superfamily. This domain belongs to the Concanavalin A-like lectin/glucanases superfamily.	1.58651e-27
NC_010628.1\|WP_012411909.1\|6998104_7000123_+\|protease-Lon-related-BREX-system-protein-BrxL	gnl\|CDD\|131701	TIGR02653, putative_ATP-dependent_Lon_protease, conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST]. [Hypothetical proteins, Conserved].	0
NC_010628.1\|WP_012411895.1\|6976049_6977309_-\|FAD-dependent-hydroxylase	gnl\|CDD\|236001	PRK07364, PRK07364, FAD-dependent hydroxylase.	0
NC_010628.1\|WP_012411906.1\|6994587_6994941_-\|XisI-protein	gnl\|CDD\|370165	pfam08869, XisI, XisI protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	5.10556e-46
NC_010628.1\|WP_012411908.1\|6995445_6998013_+\|BREX-1-system-phosphatase-PglZ-type-A	gnl\|CDD\|274259	TIGR02687, conserved_hypothetical_protein, TIGR02687 family protein. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 880 amino acids in length. This protein is repeatedly found upstream of another uncharacterized protein of about 470 amino acids in length, modeled by TIGR02688.	0
NC_010628.1\|WP_012411890.1\|6965277_6965562_-\|DUF427-domain-containing-protein	gnl\|CDD\|377265	pfam04248, NTP_transf_9, Domain of unknown function (DUF427). This domain contains a beta-tent fold.	3.21314e-39

>NC_010628.1|WP_012411898.1|6980661_6982233_-|metallophosphoesterase
MKLISDPPIPVKIQKMKERVRWMHPSFVQRGIDQTSMVIDDRREDSPEFSFMVIGDSGTKSHSRHHPQRKVAELMLPHRDDCSFVLHTGDVIYVVGSQEYYSTNFIEPYREFIVGGDKPKSIPYDRMVFNMPFLPVPGNHDYYDVPLMYRLVTGTTSSLRRLFRYKDIEIGWHGSYQGNAYARAFMDYTQAIASPQELERHLDRHYTAKTDTGRCLRYEPGQFTRLPNRYYTFRYGGIDFFALDSNTFNTPSPLPATEEGKIYRRELQKRRQEIDREELQILGICDRLNPDKPAEAEQLDELSAKLDQINEIKIDIEKQLASHKMPAIDFEQLEWLRSRLIESWNTSEVRGRVIFFHHPPYVTEATKWNQAQTLAVRHRLRWVFEQVAENLGSLIKERPIVDLILNGHAHCLEHLRTTDTGFADSHINCIISGGSGHRPRYQRRKGTELMETFTEIAGKPTRKVADSTLFVGRHDRTFQNRLPYSCVRIDVLDGSPPKFIIRPLVTERIEDEWYNRELEPFVI
>NC_010628.1|WP_012411897.1|6978785_6980132_+|ABC-transporter-substrate-binding-protein
MHNFFSPPRYAKRKRKRLSNYLRKLLFVLFVGIIALVGCQSILPVIKEHKVIHLTLWQGVNPPPNRDVLQKLVDKFNQSHPDIQVESLYVGQQDQQTPKILAAVVGNAPPDLLWYNPTIAGQLVELNALLPLDELLDKSPIKAEIDPALYGSMKYNGKIWSVPFATNNVGIFYRPSLFKAAGITELPRTWQEFAQVAKKLTRDTNGDGRIDQYGMFLPLGKGEFTVFTWLPFMWSGGGELVSGDSQNAAAVNLQNNQGAIAALQFWRDLITKGSAILSGPERGYETDDLLSGKVAMQLNGPWTLGQFQETGVDFDVFPIPVGQKPATVIGGENLFFFKTTPKREKAAFKFVEYALSEEFQTELALGTGYLPVNLKSRESPKYQDFIKKIPQVKVFLDQAKYGRSRPIFPGYNRISDSVGRAIESVLLGKSSPAESLKATQQRLDLIFK
>NC_010628.1|WP_012411896.1|6977879_6978638_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSKWANIKRQKAVVDAKKGKTFTQLSRAIIVAARSGVPDPALNFQLRTAIDKAKAASIPNDNIERAIAKGAGTFGGDNAIFEAIRYEGYGPGGVAILIEAFTDNRNRTAADLRVAFSKNGGNLGETGCVSWMFDQKGVCVVQGVIDEEQLLEASLEGGAESYEMTEDEMAEVFTDIGNLEALSQTLKNQGFKVTDAEFRWIPSNSVEVTDPDQARSLFKLIDTLEGLDDVQNVTANFDITEELMALSIS
>NC_010628.1|WP_041565690.1|6977499_6977688_-|hypothetical-protein
MNKFAKALLLALIFAAPVTAFASQAQAKTIHHVAATKSSKIKHVKYHKHHKHHAKNIAPKTH
>NC_010628.1|WP_012411895.1|6976049_6977309_-|FAD-dependent-hydroxylase
MALTQLEQPLSPQPTPPDLRGYEYDLVIVGGGIIGLTLASALKDSGLSILLIEAKVASAAVAKGQAYAVHQLSALIYQGIGVWDKILPQIAKYRRVRLSDADYPNVVEFTTDDIHTAELGYVAEHQALLQPLQEFVQDCPNVTYLCPAEVVNTQYQKDIVAVDIKVADQLYTVRSKLLIAADGARSPIRQAAGIKTSGWKYWQSCIVAFVKPEKPHNNTAYERFWSSGPFAILPLPENRCRIVWTAPHEEAKALCALDDEQFLAELTRRYGDQMGKLELLGDRFVFQVQLMQSDRYVLPRLALIGDAAHNCHPVGGQGLNLGIRDAAALAQVIQTAHQAGKDIGDIQILKGYERWRKLENLTILGFTDLLDRMFSNNFLPVVVVRRLGLWFLQRVPLLKVFMLKLMIGLKGRTPELAKR
>NC_010628.1|WP_012411894.1|6975425_6976046_+|Uma2-family-endonuclease
MTQAIPKLITFEEFADWLPDNRRVRYELHKGQIVEMAQPVGEHEDVKGFLTIKLSASIDRLNLPYSIPNQAIVRPPEKDSGYLPDVLVLNRANLVNEELWKKQSTVSLGASIPLVIEVVSTNWRDDYYLKYADYEEMGIPEYWIVDYAALGGRNFIGNPKQPTITVCNLVDEEYQISKFRDNDRIISQTFPELNLTPNQIFQAAVI
>NC_010628.1|WP_012411893.1|6969865_6975295_+|LamG-domain-containing-protein
MSSTITEIISIVKDSIAKTGQFTLKDSTINTLPLGKLMNLLEIPQLDFNLIVSDSENTITIAGQSSLLGAGKIAIEATFGEVDGTVSFSVGAKDISSCYIPGISSLVLEQGQFALHVTGKADDVTGTFSGSIHVGDTTISNAVFEVTKKDTDIVLHWMIAELDLPAISDVFLNHVSLPAELPTFHFKDIAIAISPQTGAFSFEIIAKDLWEFPANGGDLSISEVSLTIERDRRDSLTHCAITIQSNVEKEIVNGLKIKDFQLTFDLKGEDWSVDGKVNADVFDDSVTLEASYNQSQAGKTLKLAAEVDMHPVNLGEISLSLFGLELEFTKPAAQEGEVVPLEWSVAAAGKLSIPGAIESDGQLTIFREEKARGLQFEAIQAAVSIPLPSTQGMMELNFERLSISGSSSDWTFAAAVDLAFQGLNPTVQAHLPKDPIAMTFTASKQGVILSIASKSDIESIYFTVPPIELESDRIELGTAKIGFSSLSIQLGRIVDLEAELNIGLPSQLNNLFGRKKDENGHIENDADGNPLPAVEFFRTLDLHDEADTTVQVKLVISKAGITLLPETSFIKAIESQTDATGKSFWHCDFGEYGEINVDVPNFSYTGSSFAASGGFEVVKPLALPLTPIQHLLAACKLPGAAAMLPDRLPLDQEINAENFVDKLTERLEALLAKLGSGKLSNAAKEVLETISQSFHKLPTSFMEYLNFKMPQSFQFEVAASPAGALQFKASVKKDDPPIKLLFPSLMLGMPVLNGVTLRSISFGETAGGQLFLLEMDADIDQFDLATLVAAIALPEDRDPLPSTQAIQRRLRLNNTVMVLPLEFPVPIPMFYDNIGIEYLGLEGLTLQAHAQFPKPTVELQKISNLLSDIKEFFTNSDHPIPNQLPVEFKFSLNQNYLQLPKYLGGQALGTQGDGPTLDDKDIVHLLQGIRTLSVNELIQALPLNQRVGSTQVSFGPLSSSLGWLVTTPDEFSQIITQPTSKAIAYSALGLTTDLQATQILSVLPSASTANEQGIVAFLRGNFNVGSAKLDTVFGLAASSKGFKTGFEIKGAIAKVVTLNLAGAIAIASPKIAPPTSYALAFNGQSDYVKLNNPAALNFTGAITISAWIKPDAIDGLQNIVAHGYTSSPSGEVYLRILNGQYQFGYWGLNSLPFEQLVAASIPAEDVGNWVYLTGVFDGGMWRLYRNGLLMNAVAGSQGAIQVSENWAIGARGTGTERFFKGKIADVQIWNRARSLEEIGAAMMRSPKGNEPGLIGYWQLNEGSGTVAHDATANANHGQLQGTQWQLITANNTAFRLDGSSSLSIPLLNSERPISKGQVQLIDNQNNHQFHYEGDLQLFSSNSLLKVNGNLKGDINDKTYRFSGDVTTSLAGLTLLGAKALIENDLVWLEGTWLGNQTKLTLQTADKAWQIKGIAGFNLPNLSVDLGVVNKVVGSNLIKVADNLSINVAANLSLDITLSNNGFSATVSPNCTLNGQKLPLSSFTITVAPSTLEALAEQIKQKIKEQASQIFDMLFPNAQAWLDGISSKAIAWTTNAYADMGKVLGSIYGQSASQAVSLLKGAKYDVDTVGHVLKEGFGKTSDEVTQILHDAQYSAIEVGQTLNRVFGKGANEVTSALKAVGYKATDVGQMLVSVFNATDNQVASFLKTAGYTASQVGQVLSDVFHESSQATAQILKNVGYTVSEVGQALADVFQQGSQATAQILKNIGYTASEVGQVLSNVFRQSDQATAQILKNLGYNASEVGQVLKNVFGKSANDAASILSNVGYSIIDVARVLKDTFQQGKDSVWNFLKRIGVSIWDIPKIIKALFG
>NC_010628.1|WP_012411892.1|6966994_6969190_-|transglycosylase-SLT-domain-containing-protein
MLKKLQKKQISIIAGAALFAFLAGAMVSAPEIGKTVGQWLKLGKNQAEQTSDASIAQSAVFPLISQSLPERAAKLATIAGQSRSPDRNRARYLLASDYIERTQAQKALALLQGLDKDYPILAPYILLKQAQAEDMLGEDGKASDLRQSVLKRYPKEAASVKAIYLIAQPKQQEIAIAQFPSNPLTWEIIRKRLQENPNQPKLQLILANYAYDQPGIVGVLDQLVKQTTLKPEDWELIGTSYWENSQFLKAANAYAKAPKTSRNLYRTARGLQVGGKDKEIAIATYKQLVQQFPTTEEAGTALLRLAETAKTGKDGLPYLEQVISKFPKQAATALVQKAKTLETLKDQKSASAAWQLLIAKYGNSDEAAEYRWKIAQDKAKAKDYVGAWQWAEPIVTNNPNSILAPRAGFWVGKWAASLGKQQESQTAYDYVISQFPYSYYAWRAANMRGLNVGNFDNVRVMNPEVIAPQRSLPPAGSETFKELYLLGQDRDAWLQWETEFQNKIQPTVAEQFTEGLMRQARGENLIGIDKISKLEDRETPAELAQYQTLSKQIAYWQARYPFPYLRETEKWSLERKLNPLLVTALMRQESRFEPKIKSVADATGLMQLLPSTAKWIAPQIKVDIKTINLENPNDNIMLGTWYLDHTHQQYNNNSLLAIASYNAGPGNVSKWLQTLTTQDPDEFVEQIPFDETKNYVRQVFGNYWNYLRLYNPEISGIVGKYSTTHPKLPAQ
>NC_010628.1|WP_041566469.1|6966477_6966849_+|hypothetical-protein
MKLTNFINSALIVACIAFVPGIVDAQTVNNNGRQTNTDLQNASYLQPFNIAFLAYQGAFREQGIPSAGTLLSEFQIGNLTAKDIVQAAIKANKLPTQVLSDRGYVNAVESQVTSMINGNDIGS
>NC_010628.1|WP_012411890.1|6965277_6965562_-|DUF427-domain-containing-protein
MPKAIWNGAVLAESDRTVVVENNHYFPADTINKEYFTDSNTHTTCPWKGVASYYSIEVDGQINKDAAWYYPSTKEKAKNIEGYVAFWKGVKVEA
>NC_010628.1|WP_012411901.1|6983999_6985919_-|type-V-CRISPR-associated-protein-Cas12k
MSQITIQCRLIASESTRQKLWKLMATLNTPLINELIEQLGKHPDFENWRQQGKLPTTVVSQLCQPLKTDPRFVGQPSRLYMSAIHIVDYIYKSWLAIQKRLQQQLDGKMRWLEMLNSDVELVETSGSSMGAIRTKASEILAKAMPTSDSDSSQPKTKKGKEAKKSSSSSSDRSLSNKLFEAYQETEDILSRSAISYLLKNGCKLSDKEEDSEKFAKRRRQVEIQIQRLTEKLISRMPKGRDLTNRKWLETLFTATTTFPEDNAEAKRWQDILLTRPSSLPFPLVFETNEDMVWSKNQKGRLCVHFNGLSDLSFEVYCDNRQLHWFQRFLEDQQTKRQSKSQYSSGLFTLRNGHLVWQEGEGKSEPWNLNRLNLYCCVDNRLWTADGTEQVRQEKAEEISKLITKMKEKSDLKDTQKAFIQRKESTLNRMNNSFERPSQPLYQGQSHILVGVSLGLEKPATVAVVDAIAGKVLAYRSIRQLLGDNYELLNRQRRQQRSSSHERHKAQKSFSPNQFGTSELGQYVDRLLAKEIIAIAQTYKAGNIVLPKLGDMREIVQSEIQAIAEAKCPGSVEVQQKYAKQYRVNVHKWSYGRLIQSIQSKGSQAGIVIEEGKQPVRGSPHEQAKELALSAYHDRLARRS
>NC_010628.1|WP_012411902.1|6985999_6986452_+|MerR-family-transcriptional-regulator
MEEKFYTSTEAAEITNCSRRQLQYWRDKGVVIPTVNTTGKGRNVYYSVADLLTLTVMHYLLSVGLSFEVCREALAMLQDKEPWLFEEFVSKKKMRRLMLISNASQQKYLTLAEFDKEAALEALCQGQTVIPFWCDRIHEVLHQNLKRFSE
>NC_010628.1|WP_012411903.1|6986740_6987388_+|DUF1788-domain-containing-protein
MPTLTINQRLDALLPKLQDARLLSNRGIGNEIGFYIFDYDAEYEPLVQRYVDRLKLQLTSSPSGFASPSLSEQQDRAGSPIQLILLEIDLYKTILDILSERGVLKKAFELEATKGNAALAKTVAPLVRPDQVIAYIQKKLRGDEQLVIMTGVGASWPLLRSHSILNNLHPVLDKIPLVMFFPGSYDGHELRLFDTFKDDNYYRAFPLIPHQQHHL
>NC_010628.1|WP_012411904.1|6987384_6990924_+|BREX-system-P-loop-protein-BrxC
MNIAELFQKDIHRNINGVIKVGQKDDENIRQELEEYVVTNELDKHFRTFFERYTNALNNPTDKMGVWIAGFFGSGKSHFLKILSYLLANHQLENSRALDYFDEKRIPDPMLQALIAQAAHSSCDVILFNIDSKADANNKNHKESITKVFQKVFDEHLGYFGTVLPIAEFERQLDRQGKYAAFQQAFLAESGLEWKENRDAWGFHQDAIASALQTSTGMSAEAANRLLDFGEQNYTLSPEKFAGMVKQYLDSKGPQHRLIFMVDEVGQYIGEDSKLMLNLQTVVEDLGTYCLGKAWVVVTSQEAMDEITKNKIKGEDFSKIIGRFYRPLNLSSANTDEVIKLRLLSKTDAARAGLEALYSQKIAILRNQIAFTQDSADMPGYGNPQDFFTAYPFIPYQFNLLQKVFTQIRLMGSAGKHLASGERSLLDAFQVASQAVAGEPLGVLVPFHTFYMAVEGFLDSSINQVIIQAGRNPQLNSFDIDLLKTLFMVKYLKEIRANLDNLTTLSLSNIDQDKLALRQQVEAALGRLERQTLIQRNGDEYIFLTHEEQDIGREIKNTPVDSGKVKEELRKLIWESIFTDKLFRYSQRHQYKFNRKLDEQLHSQQSDITLHIVTPCAETYTAMKEDTFCIGTTGGGYEVLVRLPYEQRLVDDLETLVKTEKYIKLKSGSNLSPSIQRILRDQSDQNSKRCEDVKTILENLITRADVFACGSKLEIRSRDTKTLLNEGLSYLVGNVYQKLGYVASGFENEDQVSNALTRESQEQDINGQPVNVAAHSEMRAWLMEETRVRRLVSIKALVDKFAVRPYGWSEFDTLGVMAELANKGVIELRHAQGNVNLHDKGLVMQLRSRKEIDKYTVRLTDEINPANLKIAKDMASDLLNGNMSSDPQLLFEQYKNALTKRSQELESWLIQAEGGLPFAELLRTNLNLLAELLTKDSAAKFFDTFRQRRDDIEEFIEDVQKLQSFFSTQIKLFQQARNDLKTLEPELRHISEPDLLRRVDLVKQILAMSDPTAKIPELAMLLLPVKDKVQEALTTQIYQVESKSKAMREKLAEYVTSAHEDISAQLDLSNITQDIDKVVTSVNQVTSIDSAIARQSELESILPQLLQKVDQQANEIIQRQSNNGSNGKVTCVKPIVSVQVARVAPKPLLETLQDVDVYLEALRKTLLDEIQQNHRVRLE
>NC_010628.1|WP_012411905.1|6990988_6994525_+|BREX-1-system-adenine-specific-DNA-methyltransferase-PglX
MNRTAIKNFAIWARRYLREQVKARAAQFGITHKSITEPQTVAGGLLVAGQTLNTTEANQYHQLRNRLQDLTLSSSQSQAVDALIDEIAYTWFNRLAALRFMEVNGYIGRVLSSSDPNLVDPDLLRDASSIAEMGDLPGLDLDTLNEWRSFANRDPNPDEFLYRRLLLAQCKALAEGIPALFDPRQNYQALFLPGNLLNQDSIVRRLVKEIPEEDWQNIEVVGWLYQFYISERKDEVIGAKSKVAAADIPAATQLFTPHWIVRYMVENSLGRLWLEAHPESRLREYMPYYLENPNDNGEGEKPQALTPQELTVIDPACGSGHILVYAFDLLFEIYKEQGYLERDIPALVLTHNLYGLDIDERAAQLASFAVLMKARAKNSRILRKSLALNITAVRPTHSQTLPPATELNAEDWQPLIEAFKDADNLGSLITTPAFDGEKLKWQLNNLEASDSLFRECVTALQALLLQAELLRNKYWVVVANPPYMGSKSLNDVLRSFANQNYPDSKSDAFSIFIERFLNMSLQNGFIGLMTPFTWMFLSSYEKLRRRILSENTITSLIRPEYHAFFDSAYVPICTFTILNKALPEYQGTFIDLNQFYGANLQPIKVLEAIKNPGCGYLYYSNSVDFARTPGSVIAYWLSEKLLNIFENAESLGNVFESKQGLSTANNDRFLRLWFEVNLNDSGFGLCSREEAKFSGKRWFPYNKGGEFRKWYGNQEFVINWNNDGEEIDSFRPKAVIRNSSYYFKPSVTWSLVSSSYFGVRYSGKGFIFDSAGSSAFCQSDMIFSLTGFLCSNITNKLIQAINPTLNFSSGNVAALPWISEKANIIKPKINSIVENCINISRQDWDNFETSWDFQTHPLLRHNTKHLSEAFTIWQSKSETAFRELQRLEEENNRYWIEAYGLQDELTSEVPDDQITIRHADLNKDIRSLISYAVGCMMGRYSLDKPGLIHAGQPFDPTLHQTLSASSDAIIPITDQAYFDNDIVTRFIEFLRVAYSPETLSENLNFIANALTLKNGESAQERIRRYFLQEFISDHIQTYKKRPIYWLFTSGKKRAFGALLYLHRYSEDALARIRTDYVLELQVKLDGEIARAQQQLDNTTFSAAKKAATNRLKELQAQQLELRDYQAKLQTQADARINLDLDDGVAYNYTRFKGLVYEGADLKIADLEKASQWKRELLK
>NC_010628.1|WP_012411906.1|6994587_6994941_-|XisI-protein
MDKIEKYRNTIKKILFDYYEMTNAEITKSKEVEASDRLAFDEERDQYIWFRFGWDGKKQIQHIIMYLCIKNSKIWVEEDATNLCIVDDLLSAGIPQTDIVLGFHHPSKRGFTEFATA
>NC_010628.1|WP_012411907.1|6994928_6995345_-|XisH-family-protein
MPAKDIYHDEVKNALIKDGWTITADPYFIKYEDAELYADLAAEKPIAAERQGQKIVVEIKSFLGKSLMYDFHSALGQYIVYRNLIQLTEPEYTLYLAIDDVVYYKFFQRKSVQAVINQNQLLLIVVNTDKEEIQQWIR
>NC_010628.1|WP_012411908.1|6995445_6998013_+|BREX-1-system-phosphatase-PglZ-type-A
MNTIRIQNTLETLFQDSARWLHPGRRVVFWYDPEQQFISSFNELQLEGVEKLQLADTAFTVKYHLLVEQPNQTFLLYAPFAEPAPQENWLLDIQKSGLTFSANPAALIYADLGLRSRGLEIVIREHDKFFKSRKRTEALQAMGISPDSDERGLLLAMLSVLAGLKVPDAGTLIRRVLLGGLLESDNALWSDIERFISPEAFWEVVQEHTDFPKQNPSLNKLFVQLLITHFAKSLHDTIPPQLANQVITPGQRAYAFIDQWMRDQQDSLGWKILSSEVAEQLHIFDAIENLEPEVLFEAASFEVVDKVLIRTCVKTLQMQMRQQITELTPWRTWLQARHTLIWFPQYEKIYQALEAAIALLEFKQQYPEGFRQPAPILFKAYASDLHSFDKAYRHFIVKSDDAQGDILKGLIDDVENLYTQWFLDSLGEAWSDALGNNNWELEGIASQTRFFGRHVFPILERSDREKVFVIISDALRYEVASELEEVIKKEVRGETSLEAQLGVLPSVTRLGMAALLPGSKLELIPGDDDVRLDGLSTKGASARQKVLNQNSRVEATVLSAKDLLEMNTDEGRAAVQPYRLIYIYHNVIDAIGDQASSERQVLSACGTAISELLRLVKKICNSINGTNVIITADHGFLYQRRLIQEADKRPLPSGEVVLESKRRYLLAREQLNDSTLLHFSLPYTENGTVAIVPRGSLRFAVQGAGAQFVHGGASLQEICVPVITYHHQRAVKGDEGPARKVGVQVSARVRRVTNNRFTLTLVQSDAVEGRWRSRQITVAFYDPQTNIPITDVRGANLSSTSPHPSDREISLRLTVTTANPPTNVYLIVKDADDESELLRETWAVSLGIANDFGDF
>NC_010628.1|WP_012411909.1|6998104_7000123_+|protease-Lon-related-BREX-system-protein-BrxL
MHDLNQKLNSIYPGKVVRKDLTKRIKEGANVPVYVLEYLLGMYCATDDETTIEEGVTRVKNILAQNYVRPDEAEQIKSKIRELGRFTIIDRVTVTLNDRDDIYQGTLMNLGVKGVVIDPEIVKPNQKLLGGGIWCILQLEYEAGTKPSPFIVGSLKPIQMPSVDMDELFAGRPAFTRSEWIDLLIRSTGLEPTTVSEDVKWHLLARLVALCENNYNCCELGPRSTGKSHVYKEVSPNSILVSGGKTTVANLFYNMSNRRVGLVGLFDVVAFDEVAGMSFHDNDGVQIMKDYMASGSFARGKAEITANASMVFVGNINQSVESLVKTSHLLAPFPEAMIDTAFFDRFHAYIPGWEIPKFSPENFTNQYGFIVDYLAEWLREMRKRSFADAIDLHFRLGNNLKQRDVQAVRKTVSGLLKLLFPDGSFSKEDVREALVYGLRVRRRVKEQLKKIGGMEFYDVHFSYIDLETLDEHFVSVPEQGGSSLISQEMLTPGHLHFVSTGDSGIIGAFKLELQAVPGSGKLVRTGVATAGKMKDSLNIAMNYFKANAQRVSSSIHPSNLDFLLQLLDLQGSGAPQESGLALFVSLCSASLKRSVQTQFAIFGEMTIGGTITPVSNLAGSLQVAFDAGAKRILLPMASAVDLGSVPPELFAKFQTSFYADPVDAVFKALAVD
>NC_010628.1|WP_012411910.1|7000119_7000722_-|DUF1819-family-protein
MTETAYAARTNHAFVLTETLRVAELMYQGATQEDIRQRVLVDDLFQLRSQVSRERALQTVLKRLQQVPEEYIQLIATSNPDTRRFTILFLILQEHRLLRELIAEVLLDKIKGFDYVVTTADLRTFFEGKRDQNSTVAAWSNSTYKKAASNTLLVLVNAGLLQPTSPRGNYQIRSVPVPSALRQQLLADGLAHYLTLMLDF

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Crispr_ID: NC_010628_28

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_28

7053084-7053208

Orphan

A:N

Consensus_repeat	Method
TAGCCCGCTTTGTGAATGCGATCGCTTGCATTATGAATGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_28

>merge|NC_010628|28|7053084-7053208|CRISPRCasFinder
TCGCTTGCATTATGAATGCGCTAGCCCGCTTTGTGAATGCGATCGCTTGCATTATGAATGCATTAGCCCGCTTTGTGAATGCGATCGCTTGCATTATGAATGCATTAGCCCGCTTTGTGAATGCG

>NC_010628|28|27|7053084-7053208|CRISPRCasFinder
TCGCTTGCATTATGAATGCGCTAGCCCGCTTTGTGAATGCG	ATCGCTTGCATTATGAATGCATTAGCCCGCTTTGTGAATGCGA
TCGCTTGCATTATGAATGCATTAGCCCGCTTTGTGAATGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012411936.1\|7040702_7041413_+\|cadmium-resistance-transporter	unknown	unknown	gnl\|CDD\|226750
NC_010628.1\|WP_041565696.1\|7051831_7052884_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381306
NC_010628.1\|WP_012411953.1\|7063201_7064617_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NC_010628.1\|WP_012411949.1\|7054776_7056624_+\|malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
NC_010628.1\|WP_167315548.1\|7062598_7062754_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012411947.1\|7053308_7053914_+\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NC_010628.1\|WP_012411951.1\|7060116_7061634_+\|alpha,alpha-trehalase	unknown	unknown	gnl\|CDD\|224541
NC_010628.1\|WP_012411944.1\|7049994_7050711_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|380375
NC_010628.1\|WP_012411938.1\|7042624_7043053_+\|DUF202-domain-containing-protein	unknown	unknown	gnl\|CDD\|376882
NC_010628.1\|WP_148220370.1\|7054585_7054780_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565695.1\|7043095_7043818_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NC_010628.1\|WP_167315672.1\|7043825_7043987_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012411954.1\|7064705_7065305_+\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|234611
NC_010628.1\|WP_012411948.1\|7054007_7054415_+\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|225556
NC_010628.1\|WP_012411942.1\|7045498_7049251_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|378942
NC_010628.1\|WP_012411955.1\|7065265_7066012_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NC_010628.1\|WP_012411945.1\|7051102_7051675_-\|DNA-starvation/stationary-phase-protection-protein-Dps	unknown	unknown	gnl\|CDD\|236521
NC_010628.1\|WP_012411950.1\|7057177_7059976_+\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|225819
NC_010628.1\|WP_012411940.1\|7044007_7044712_-\|mobilization-protein	unknown	unknown	gnl\|CDD\|349771
NC_010628.1\|WP_012411937.1\|7041492_7042155_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012411936.1\|7040702_7041413_+\|cadmium-resistance-transporter	gnl\|CDD\|226750	COG4300, CadD, Predicted permease, cadmium resistance protein [Inorganic ion transport and metabolism].	1.75633e-46
NC_010628.1\|WP_041565696.1\|7051831_7052884_-\|aldo/keto-reductase	gnl\|CDD\|381306	cd19080, AKR_AKR9A_9B, AKR9A and AKR9B families of aldo-keto reductase (AKR). The AKR9A family includes Aspergillus nidulans sterigmatocystin biosynthesis dehydrogenase StcV, Aspergillus flavus norsolorinic acid reductase (NOR), and Phanerochaete chrysosporium aryl-alcohol dehydrogenase [NADP(+)] (AAD), are founding members of aldo-keto reductase family 9 member A1-3 (AKR9A1-3), respectively. StcV may be involved in the dehydration of 5'-hydroxyaverantin to form averufin. NOR is involved in aflatoxin biosynthesis. AAD (EC1.1.1.91) is involved in lignin degradation and reduces aromatic benzaldehydes to their respective alcohols in the presence of NADP(H). The AKR9B family includes Saccharomyces cerevisiae aryl-alcohol dehydrogenases AAD14p, AAD3p, AAD4p, and AAD10p, which are founding members of aldo-keto reductase family 9 member B1-4 (AKR9B1-4), respectively.	0
NC_010628.1\|WP_012411949.1\|7054776_7056624_+\|malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NC_010628.1\|WP_012411947.1\|7053308_7053914_+\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	4.47177e-27
NC_010628.1\|WP_012411951.1\|7060116_7061634_+\|alpha,alpha-trehalase	gnl\|CDD\|224541	COG1626, TreA, Neutral trehalase [Carbohydrate transport and metabolism].	3.27406e-154
NC_010628.1\|WP_012411944.1\|7049994_7050711_-\|pirin-family-protein	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.92421e-81
NC_010628.1\|WP_012411938.1\|7042624_7043053_+\|DUF202-domain-containing-protein	gnl\|CDD\|376882	pfam02656, DUF202, Domain of unknown function (DUF202). This family consists of hypothetical proteins some of which are putative membrane proteins. No functional information or experimental verification of function is known. This domain is around 100 amino acids long.	1.51051e-16
NC_010628.1\|WP_041565695.1\|7043095_7043818_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.97321e-14
NC_010628.1\|WP_012411954.1\|7064705_7065305_+\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	5.7811e-63
NC_010628.1\|WP_012411948.1\|7054007_7054415_+\|DUF393-domain-containing-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	5.38727e-36
NC_010628.1\|WP_012411942.1\|7045498_7049251_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	2.7106e-16
NC_010628.1\|WP_012411955.1\|7065265_7066012_+\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	3.62216e-26
NC_010628.1\|WP_012411945.1\|7051102_7051675_-\|DNA-starvation/stationary-phase-protection-protein-Dps	gnl\|CDD\|236521	PRK09448, PRK09448, DNA starvation/stationary phase protection protein Dps; Provisional.	8.7771e-88
NC_010628.1\|WP_012411950.1\|7057177_7059976_+\|malto-oligosyltrehalose-synthase	gnl\|CDD\|225819	COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism].	0
NC_010628.1\|WP_012411940.1\|7044007_7044712_-\|mobilization-protein	gnl\|CDD\|349771	cd05386, TraL, transfer origin protein TraL. The transfer origin protein TraL is member of the SIMIBI superfamily which contains a ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. The specific function of TraL protein is unknown.	1.74905e-19
NC_010628.1\|WP_012411953.1\|7063201_7064617_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0

>NC_010628.1|WP_041565696.1|7051831_7052884_-|aldo/keto-reductase
MRYKLLGKSGLRVSELSLGTMTFGEDWGWGASVDESRKIFDTYTEAGGNFIDTANGYTDGSSEKIVGELIAKERERFVVATKYSFPLQMNNKKGDPNASGNHRKNLIQSLEGSLKRLNTDYIDLFWLHAWDFTTPIEEVLRSLDDVVRQGKVLYIGISDAPAWIVSQANTIAQFQGWTQFVALQIEYSLIQRTPERDLLPMAKAFDLAVTPWSPLGGGVLTGKYNQPPQAGDEQGRLTNAALGSISERNLAIAQVVSEVAAEIGHTPSQVALAWLLAQSGVIIPIIGARKLTQFQDNLASIEVSLSPEHLQRLDEISKIELGFPHDFLQNDVIRDRLFGGTFNTIENHHI
>NC_010628.1|WP_012411945.1|7051102_7051675_-|DNA-starvation/stationary-phase-protection-protein-Dps
MSDNSIASRLYPTRIDIPAKARVQIVVLLNQTLAATSDLKTQAKQAHWNVKGTDFYQLHLLFDELAGELEGYIDLVAERVTALGGYAFGTARAAASNSILPEYPLDILDGKDHVTALADRFALYAKHIREAIAKTDELDDLDTADLYTEISRTIDKRLWFLEAHLQIAEIKEENGNAGTTKTQKIPAAVK
>NC_010628.1|WP_012411944.1|7049994_7050711_-|pirin-family-protein
MSQNTITHLIHDRNARGHAKMGWLDSYHTFSFGSFYDPNRMGFRSLRVINDDRIAPGAGFPTHSHRDMEILTYVLEGAVEHKDSLGTGSVIRPGDAQIMSAGTGISHSEFNPSPTEPLHLLQIWILPDREGITPRYEQKAFPLEEKRGKLRLIASKDGRDGAVTIHQDVELYTSVLESGDVVNYQVKSDRYAWLQVAQGIVDLNGEELRAGDGVQINGEEQLEISTNIGGEILLFDLG
>NC_010628.1|WP_012411942.1|7045498_7049251_+|tetratricopeptide-repeat-protein
MQTLHLDLKPVDDNYVELRYFVDNPNQYEKRSLCLTEIADLIKLAERDYYVSFFPEDYTVTGRRLYNWLDGSDRWLQPLLDKYRREGIVLAIATSEKLAHLPWEVLHDGNGFLVQRVPAIVPVRWVSDSTVKKLTIDGEAENRALQVLFMATSPLNVEPVLDFEGEEARILEATKRQPLALTVEESGCLSELGYLVDGYGKDYFDVLHLTGHATFQDGQPRFITETATGEAFYASAGDIAQELQFQLPKLIFLSGCRTGQAGNSGSVPSMAEELLKSGAKAVLGWGQKVLDADATAAAAALYEELSAGKQIAEAVACTYQALIKNNAWDWHLLRLYAAGNLPSSLVTPRGKPGRKPAPPLSVSTQFLDAAGKVKVPTRESFVGRRRQLQSCLRVLSQSTDEVGVLIHGMGGLGKSSLAARLCDRLPNFERVVWVGRIDEASLVSRLAEKLDDNEQRKSLQNYDEELRFRLRRVFQDLHEQAKPFLLVLDDFEVNLETSPPTPLRGGEGSPVPPFPSREGGLGGLGRLQTEAAEVMKALVWAIKENYTSHRIIITCRYDFEFTLLQYFHKQPLDALQGADLQKKFNRLTAFSAKSQVDEALKSQAQKLADGNPRLLEWLDKILQNTTVDVAAILNRLAADPVELREQVLAEALLQQMDSTMREMLARGLVFELPIPREALAAVCDTIPNLEDYISRAVALGLLEVSHDEALRVPRILPVQLPEDGEALHKQAAEVLYRLWWEEVKTEIEEQRLEIHRLAFRGKVNKITVEIAGKLARSWKSQSRFREAVQLCKSTLELAEDYLVLHELARSEQELGDVNKAQTHYQQALDNCPAEDEEEKAAIIHNLGILKANSGEIEEAIALYQQSLAITEQIGNVQTQAATLHCLGILKANSGEIEEAIALYQQSLAITEQIGDVQGKAATLHCLGMLKANRGEIEEAIALYQQSLAIEEQIGNVQGQAATLHEMGVLKANRGEIEEAIALYQQSLAITEQIDHVQTQAATLHEMGVLKANRGEIEEAIALYQQSLAIEEQIGNVQGQAATLHEMGVLKANRGEIEEAIALYQQSLAIKEQIGDVQGQAATLHEMGVLKANRGEIEEAIALYQQSLAIKEQIGDVKTQAATFHQLGILKADSGEIEEAIALYQQSLAITEQIGNVQTQAATLHCLGILKANSGEIEEAIALYQQSLAITEQIGDVQTQAMTLWWLGHIAEQQGNYNQALDYLQPALEILQRIQSPDAEEVRQMVARCKI
>NC_010628.1|WP_012411940.1|7044007_7044712_-|mobilization-protein
MPTIHFVDGEKGGVGKSLFARTMIQYCLDKRIPFVPVETDRSNPDVAGVYKEICKYAVFSENERQANKADRIFEWAIERPVIVNLAAQSHRAVQGWIESNQLLELGSSQGVMFCKWFISTGGYDSINLFTQSVNTYGEKIPHILVRNLGLCDDWEHLESDSNFQNIVNKYQIKVIDFPKLAYRERNIIDQNRLTFAEAREYKEFGIIGKQRVVNFLKLAYGAFEKVGIWYEKVE
>NC_010628.1|WP_167315672.1|7043825_7043987_+|hypothetical-protein
MLLFLRIVVKFVLRSPPVGGYAIAYGRRIRHRIPIKSPTAVCPKSSLVISSND
>NC_010628.1|WP_041565695.1|7043095_7043818_-|class-I-SAM-dependent-methyltransferase
MSKKSDSQFQNLFTSAKSSNWDERLGQIAYRFNREYQRETFELPTEVQAMPIFREWIGGSFSGRIASPFWEIAQPQKNQHCLDIGCGISFLIYPWRDWQAFFHGQEISNVARDTLNSRGPQLNSKLFKGVELGAAHQLNYSPEQFDLAIATGFSCYFPLEYWNAVLAEVKRVLKPGGHFVFDILNPEQPLAEDWAVLETYLGAEVFLEPVAGWEKAIKAAGAKIVTQKSGELFQMYKVRF
>NC_010628.1|WP_012411938.1|7042624_7043053_+|DUF202-domain-containing-protein
MQLKLKSAEEDKDQKKPGRLNPSRIRDHLANERTYLAWMRTGIALLGFGVVIVRLRAFHVPLVPRPGNGWKLGLVFSLVGLITVWLSTSHYFAVRRDIEEDTYEPTDRWVLLFSLAVMILGTGVIYFVFTSSLDPSSPLIPE
>NC_010628.1|WP_012411937.1|7041492_7042155_+|hypothetical-protein
MKVWKSLLIALMIFANLAFAQPSFADRPKFSKNPDYIEVTKALNELSKTKDAQTQVQGLTPEEIQKRAEELTLQKYALETGINWGKCENQTGNTIAVYGKRPNDEDNEDAVYDNGLYFLANGQSTKDNWDCDGIYLPNDIKVANFTSSPNGQGEELTGPVALKILDGTQLVIKTNPDSGAIELNVPTVKVLNSNKANWFIPDISQAIIDTRVPNAPTKKS
>NC_010628.1|WP_012411936.1|7040702_7041413_+|cadmium-resistance-transporter
MSGLVTAITTGITAFTATNIDDIVILTLLFSQINKTFRSRHILAGQYLGFAALIVASLPGFFGGLIIPQDWIRLLGLMPIIIGVSGSLKREEDSPEEGAEETEPSCPSIVKSFFSPQTCNVAAIAFANGSDNISVYVPLFANSELDSLLIILSVFFALVGVWCYTAYKLTYLPAIAHFLTENGNTFVPCILIGLGMFIVTENVTWTLLSVVSSYIFSLILGFNTQSSSEEQEKLSI
>NC_010628.1|WP_012411947.1|7053308_7053914_+|Uma2-family-endonuclease
MTYTSSKVLTFEEFIAQYGDNTRYELIDGQLRDMEPTGLHEAVAGSIAGRIYVEIFNSNFNWLIPKTCLIKPPAAEATALRPDVIVLDKAELSKEPLWSKEPIICNGSTIKLVAEVVSTNWQDDYARKVEEYAFLNIPEYWIVDFRGLGGLQFIGNPKQPTFTVCQLVNGVYQQQQYHLGDTISSELLPNLQLKLDDIMPI
>NC_010628.1|WP_012411948.1|7054007_7054415_+|DUF393-domain-containing-protein
MNYYVIYDGNCNLCVTLVQLLETLDKGKLFRYAPMQDEQTLLQWGITAQDCEQGMILIDGNEPQRRWQGSNAAEEIGRLLPVGSVFVDAYRALPGMKWAGDRFYEQIRDNRYTIFGKRSNTYESSYCVDGSCKPI
>NC_010628.1|WP_148220370.1|7054585_7054780_+|hypothetical-protein
MSLDRIYSVKNPPPGASKKSGRRTIMLSGVFVNIVQSMTCDRLRRAGTPSHDNSAQHTDGRDTA
>NC_010628.1|WP_012411949.1|7054776_7056624_+|malto-oligosyltrehalose-trehalohydrolase
MRIGANYLGNGECEFTVWSPLLDSVTVKTLTPQEQVIPLKPQSEGYWHAKVNDVYPGTLYRYVLNGQDAFADPASQYQPEGVHGPSQIVDHQFEWTDEEWTGIPVESMIFYELHVGTFTPEGTFTAIISRLPELRELGINAIEIMPIAQFPGDTHIEASLAYRNWGYDGVYPYAVQNSYGSPAELKQLVNACHQNNIAVVLDVVYNHFGPEGNYMSQFAPYFTKTYKTPWGEALNFDDAHSQGVRNYFIENALYWLREFHIDALRLDAIQAIYDLGAKHFLWELAEAVHHFSQQGQKWKRHLIAESDLNNPQIIRPAELGGYGLDAQWSDDFHHSLHALLTGDRQGYYQDFGQTAQLAKAYEDTFVYDWKYAPHRKRFHGISCRDRNLSQFAICIQNHDQIGNQMKGERLTQRISFEGLKLAAGAVLLSPNLPLLFMGEEYGETAPFIYFVSHSDPDLIQAVRAGRKQEFEAFHYADDPPDPESAETFLKSKLNWQLRHEGNHKVLWDWYRQLINLRKTHPALLNQDRNFIEATSDEDKQVVIVRRWCESSELIFVMNFNSSPVTVTLPFEQNANKLLDSADTSWSGVGSEADEHLSAGKEVKLQPTSLVLYEKA
>NC_010628.1|WP_012411950.1|7057177_7059976_+|malto-oligosyltrehalose-synthase
MRIPTATYRIQFTPQFGFDNAKAIAAYLADLGISDLYASPIFKARSGSTHGYDIVDATQLNPELGTNESFDALVSEVQSLSMGWLQDIVPNHMAYSSENDYLMDILEHGPDSSYTDYFDLSWNAPFGDRQERILAPLLGDFYGASLENGHIQLQYEQNGLTVNYYSLKLPLRLESYTKFITHNLGKLTRTLGRNHPDFIKLLGILYILKSVPSEVAGKQRQDQIAFIKGLVWELYTTNDAIREFIDENIQTFNGEPGNSESFNLLDELLNDQFYRLAFWKVGAEEMNYRRFFTVNELISVKVEEVRVFNNTHSLINKLVEEGKFTGLRIDHIDGLYNPIQYLQRLREKTGDVYITVEKILELTEELPENWEIEGTSGYDFLNYVNGVFCQTENESSFDKIYQNFIGSRVDYSSVVKDKKHLILEKNLAGDIDNLALLLKNISSKYRYGNDFTLNGLKRAIAEVLTLFPIYRTYITPDGIGESDRDTIQEVIRQAKEQTPLLQHELTFIEKLMVLDFDNSLTQTEREQWIYFVLRMQQYSGPLMAKGVEDTTLYVYNRLLSLNEVGGNPGHFGIDLAKFHAFNKQHQATWPHTMNTTATHDTKRGEDVRARLNVLSEIPDEWDQQVNTWSAINRGSRSHRHGFAMPDRNDEYFLYQTLVGAFPFAEHEHASFVERVKDYIIKAIREAKVHTAWLRPDSEYEEACTSFIEKVLDPSISKEFLEAFRPFQQRIAEYGIFNSLSQTLLKITAPGVPDLYQGTELWELSLVDPDNRRPVDFEQRRTYLNAIREQAKTDILGLIQELLNDKTDGRIKLFLTAQLLKARTNYVSLFQDGDYLPLEVQGTYANHIIAFARREGNQTAIAIAPRFLTSLIQPGDNPLGESVWQDTHLQLPPGTPLTWTNVLTQQPLQATQTLSIGSALAHFPVALLVSSAE
>NC_010628.1|WP_012411951.1|7060116_7061634_+|alpha,alpha-trehalase
MITPSQLTTTQIDTVRTHIKKTWKTLTRSHEHLLQSAKDTKLDHKPGTPWIVYISPLEDCPDIQTVLERSLSSKDMQGIEIRTLPSEVEAIKQHGLLYLPGPYVVPGGRFNEMYGWDSYFILLGLLHDREWELAQSQVDQLLYQVKHYGTILNANRTYMLSRSQPPVLSMMVLALFQHTQDEEWLRTTVPLLEQFYYYWVVPPHLNPGTGLSRFYAFGEGPAPEVVFSERDEEGKSHYDRVKEYYQTFEIEDYDVNLYYDRENDKLTHLFYKADRTMRESGFDITNRFGPFSADILHYAPVCLNSLLYQVEQDLAQINAILGNEQLEKQWRDRGEYRRDRIDQFLWNEERGLYCDYHFQSGKRRCYEFATTFYPLWLGISSQAQAQRVVENLSLFEAPGGILTSTHITGNQWDAPFGWAPLTLIAVQGLHRYGFHTEGDRIANKFLAMVIKEFERHNTLVEKYDVERCSANVSDEISFGYSSNEVGFGWTNGVILELLAARGKKV
>NC_010628.1|WP_167315548.1|7062598_7062754_-|hypothetical-protein
MMAISQIIANITRYISEAAMRIFGPNDDAYPAIGVQPFTGEPYDKRTADTW
>NC_010628.1|WP_012411953.1|7063201_7064617_+|nicotinate-phosphoribosyltransferase
MTTLPDLDYVYKQQSQQNQELNLSADDYSLLTDLYQLTMAACYTGEGIEQRRASFELSVRRLPEGFGYLIAMGLTQALEYLAKIRFSSAQIAALQATGIFAHAGDRFWSLLAEGKFTGDVWAVPEGTAVFANQPLLRVEAPLWQAQLVETYLLNTINYQTLIATKAARLRDIAGESATLLEFGTRRAFSPQGSLWAARAALAGGLDSTSNVLAALQLGQQPSGTMAHALVMALSAIEGTEEQAFSAFHRYFPGAPLLIDTYDTIAAAGRLAEKVNSGEMQLTGVRLDSGDLVTLSKQVRSLLPGVPIFASGDLDEWEIARLKAAGAEIDGYGLGTRLVTGSPVNGVYKLVDIDGIPVMKQSSGKVTYPGRKQIFRSYTGGKVKADRLGLLGESSQEEEPLLQLVVQEGQRVQPLESLATIRQRTAVSVASLPQQTRLLDHPVAVEVEISEALRVLTEETKKRTAEALSTQR
>NC_010628.1|WP_012411954.1|7064705_7065305_+|nicotinate-nucleotide-adenylyltransferase
MRVALFGTSADPPTAGHQKILSWLSERYDWVAVWAADNPFKSHQTPLEHRAAMLRLLITDIDAPRHNIALEQELSSFRTLETVGKAKLIWGEDAELTLIIGSDLLSQLPRWYRIEDLLQEVQLLIVPRPGYAIDESSSEVVQKLGGKIAIASLIGLDVSSTAYREHGDSQALTAPVVAYINREHLYECQDVHKKRYQLR
>NC_010628.1|WP_012411955.1|7065265_7066012_+|NUDIX-hydrolase
MPGRSQKKIPTPLNQQPLADFKVGVDNVIFSVDTVQNRLLVLLVMRQQEPFLNHWSLPGTLVRPGESLEDAAYRIMAEKIKVNNLYLEQLYTFGGPNRDPREATDSYGVRYLSVSYFALVRFEEAELIADRMTGIAWYPVKQVPQLAFDHNEILAYGHRRLRNKLEYSPVAFEVLPEMFTLNDLYQLYATVLGDNFSDYSNFRARLLKLGFLCDTGIKVSRGAGRPASLYKFDAEAFAPLKDKPLVFI

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Crispr_ID: NC_010628_29

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_29

7171867-7171961

Orphan

A:N

Consensus_repeat	Method
AGGTTAGCATTTTCAAGATTGGCATTTGAAAGGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_29

>merge|NC_010628|29|7171867-7171961|CRISPRCasFinder
AAAGTTGCATTTTCAAGGTTAGCATTTTCAAGATTGGCATTTGAAAGGTTGGCATTTTCAAGATTGGCATTTGAGAGGTTAGCATTTTCAAGATT

>NC_010628|29|28|7171867-7171961|CRISPRCasFinder
AAAGTTGCATTTTCAAGGTTAGCATTTTCAAGATT	GGCATTTGAAAGGTTGGCATTTTCA
AGATTGGCATTTGAGAGGTTAGCATTTTCAAGATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012412036.1\|7161579_7161990_-\|8-oxo-dGTP-diphosphatase-MutT	unknown	unknown	gnl\|CDD\|239517
NC_010628.1\|WP_167315676.1\|7182648_7182795_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412044.1\|7171145_7171391_+\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown
NC_010628.1\|WP_012412047.1\|7175144_7175618_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412053.1\|7180500_7181829_-\|IS701-like-element-ISNpu6-family-transposase	unknown	unknown	gnl\|CDD\|227946
NC_010628.1\|WP_012412039.1\|7164354_7167618_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NC_010628.1\|WP_012412037.1\|7162238_7162583_-\|DUF760-domain-containing-protein	unknown	unknown	gnl\|CDD\|368489
NC_010628.1\|WP_148220374.1\|7170667_7171033_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565706.1\|7162844_7163801_-\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	unknown	unknown	gnl\|CDD\|180963
NC_010628.1\|WP_012412046.1\|7174497_7174914_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412050.1\|7177487_7178462_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225762
NC_010628.1\|WP_041565707.1\|7169493_7170150_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278
NC_010628.1\|WP_012412049.1\|7176600_7177335_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226164
NC_010628.1\|WP_012412041.1\|7169171_7169435_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412051.1\|7178614_7179910_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|129116
NC_010628.1\|WP_012412048.1\|7175702_7176497_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NC_010628.1\|WP_012412035.1\|7160857_7161322_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341362
NC_010628.1\|WP_012412055.1\|7182823_7184332_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237738
NC_010628.1\|WP_012412040.1\|7168166_7168721_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NC_010628.1\|WP_012412054.1\|7182097_7182529_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012412036.1\|7161579_7161990_-\|8-oxo-dGTP-diphosphatase-MutT	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	3.40772e-54
NC_010628.1\|WP_012412050.1\|7177487_7178462_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|225762	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism].	7.43357e-66
NC_010628.1\|WP_012412053.1\|7180500_7181829_-\|IS701-like-element-ISNpu6-family-transposase	gnl\|CDD\|227946	COG5659, COG5659, FOG: Transposase [DNA replication, recombination, and repair].	4.78634e-92
NC_010628.1\|WP_012412039.1\|7164354_7167618_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NC_010628.1\|WP_012412051.1\|7178614_7179910_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	2.25696e-56
NC_010628.1\|WP_012412037.1\|7162238_7162583_-\|DUF760-domain-containing-protein	gnl\|CDD\|368489	pfam05542, DUF760, Protein of unknown function (DUF760). This family contains several uncharacterized plant proteins.	4.71154e-39
NC_010628.1\|WP_041565706.1\|7162844_7163801_-\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	gnl\|CDD\|180963	PRK07405, PRK07405, RNA polymerase sigma factor SigD; Validated.	0
NC_010628.1\|WP_041565707.1\|7169493_7170150_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	1.27922e-20
NC_010628.1\|WP_012412049.1\|7176600_7177335_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226164	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.17064e-99
NC_010628.1\|WP_012412055.1\|7182823_7184332_+\|4-alpha-glucanotransferase	gnl\|CDD\|237738	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.	0
NC_010628.1\|WP_012412048.1\|7175702_7176497_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.57039e-90
NC_010628.1\|WP_012412035.1\|7160857_7161322_-\|CBS-domain-containing-protein	gnl\|CDD\|341362	cd04586, CBS_pair_BON_assoc, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.8267e-58
NC_010628.1\|WP_012412040.1\|7168166_7168721_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.10792e-48
NC_010628.1\|WP_012412054.1\|7182097_7182529_-\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	2.35517e-39

>NC_010628.1|WP_012412044.1|7171145_7171391_+|ribbon-helix-helix-protein,-CopG-family
MSNLSVQLPDSLYKSLQELAKQDGISIDQFVATAVAEKIAALTTEIYLRELAKLGSREKYDAVLAKVPDIEPESCDQLPTA
>NC_010628.1|WP_148220374.1|7170667_7171033_+|hypothetical-protein
MIFLFRHDWNRLAKLYRTKEAPPQNFSRMQSGSVGLVHYKGTLNVGITPQGIYLSIFPLFGLGLPPLLIPWSAIRKIEPANQLFIERFRLYLSSPKVKLILSKDILEPAKEFLATQGFEWI
>NC_010628.1|WP_041565707.1|7169493_7170150_+|(2Fe-2S)-ferredoxin-domain-containing-protein
MGASHTMEVSEFCLEGRFINFVIKDGYKLKGLMLGTHEGEFYIKLAKQLRAAFDLRLPPGTWLQVVGYKKHDLKDGTITLKAERVMAARSEMGRVQTTTPVQEPPSIHNVKVKPAKAKATILVCQKSDCMKRGGKAVCQALEAALSDRGLEDQVTIKGTGCMKNCKAGPNLVMPDKTRHSRIQAAQVPRLMDKHFGDKSLEAQPENLREVAITNGKLC
>NC_010628.1|WP_012412041.1|7169171_7169435_+|hypothetical-protein
MKSFSSEIESNHLVEVNWADRWQVYQRLKELDIPCTCTANQPLKVEIGSPMTAVQLWSVIQRLTASRQDQILTLECCWKIANNSSNF
>NC_010628.1|WP_012412040.1|7168166_7168721_-|DNA-starvation/stationary-phase-protection-protein
MSETQTLLRNFGNVYDNPVLLDRSVTAPVTEGFNVVLASFQALYLQYQKHHFVVEGSEFYSLHEFFNESYNQVQDHIHEIGERLDGLGGVPVATFSKLAELTCFEQESEGVYSSRQMVENDLAAEQAIIGVIRRQAAQAESLGDRGTRYLYEKILLKTEERAYHLSHFLAKDSLTLGFVQAAQS
>NC_010628.1|WP_012412039.1|7164354_7167618_-|carbamoyl-phosphate-synthase-large-subunit
MPRRDDLRKILLLGSGPIVIGQACEFDYSGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVEKVIEKERPDALLPTMGGQTALNLAVALAKNGVLEKYGVELIGAKLPAIEKAEDRKLFGEAMARIGVAVCPSDTAETLEEAKAVARQIGSYPLIIRPAFTMGGSGGGIAYNQEEFEEMAQVGIDASPVSQILIDQSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDMAIKIIREIGVETGGSNIQFAVNPLNGDVVVIEMNPRVSRSSALSSKATGFPIAKMAAKLAVGYTLDEIKNDITKKTPASFEPTIDYVVTKIPRFAFEKFPGSDPVLTTQMKSVGEAMAIGRTFNESFQKALRSLETGRAGWGCDKAEKLPSGEQIRAQLRTPNPDRIFAVRHALQQGMTIEEIYELTGIDRWFLDKLQQLLDVEKFLKRTPLQQLTKEQIYEVKRDGYSDRQIAYATKTTEDEVRAYRKSLGIIPVYKTVDTCAAEFEAFTPYYYSTYEEETEVMPATKPKVLILGGGPNRIGQGIEFDYCCCHAAYALKDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIETENPVGIIIQFGGQTPLKLAIPLQEFLNNDTSGLNTKIWGTSPDSIDMAENRERFEKILQELNIAQPPNGIARSYEDALIVAKRIGYPVVVRPSYVLGGRAMEIVYSDAELERYMSFAVLIEPEHPILIDKFLENAIEVDVDAIADHTGRVVIGGIMEHIEQAGIHSGDSACSLPSISLSPAVLNQIRTWTVQLAQALSVVGLMNIQFAVVGASSYSPQVYILEANPRASRTVPFVSKATGVQLAKLASLIMSGKTLEELGFTEEVIPTHIAVKEAVLPFNKFPGTDTILGPEMRSTGEVMGIDSDFGRAFAKAELGAGERLPLTGTVFVSMSDRDKAAAGAVVKEFIDLGFTVMATLGTRRVLLEQGLNIELVLKLHEGRPHVLDAIKNQKIQLIINTPSGEEAHTDARLIRRTALAYKIPIITTIAGAKATVAAIRSLQNTTLDVKTIQEYCPIAR
>NC_010628.1|WP_041565706.1|7162844_7163801_-|RNA-polymerase-sigma-factor,-RpoD/SigA-family
MKTAQTATDLVRTYLREIGRVPLLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPVELNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGELAQELELTPKQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDPGASPEEFVMQSSLSYDLDRLMGDLTPQQREVITLRFGLTDGQALTLAKIGEILNISRERVRQIEREALTKLRKSKANMGEYLAS
>NC_010628.1|WP_012412037.1|7162238_7162583_-|DUF760-domain-containing-protein
MSNPSNRVSEFFNSESETNDLLWQYVKSLSPETVTQLSKPTSAEVFQVMERNITGLLGNLPSEHFGITVSTSRESLGRLLASAMISGYFLRNAEQRMNFELALQGTETNNTEVD
>NC_010628.1|WP_012412036.1|7161579_7161990_-|8-oxo-dGTP-diphosphatase-MutT
MSETSSFPPHKIIGVAVIWNDQKQILIDRRRPEGAMGGLWEFPGGKIEPGETIQECIQREISEELGIVIEVGEHLITIDHTYTNLRVSLTVHHCCHVTGVPQPLESDEIRWVTLEELDQFTFPKANTQIIAALKGN
>NC_010628.1|WP_012412035.1|7160857_7161322_-|CBS-domain-containing-protein
MPKTVADVMSRDPIVVRAETPLKEAIQILAERHISGLPVVDDVGKLVGIISETDLMWQETGVTPPAYIMFLDSVIYLKNPATYERDLHKALGQTVGEVMSKNPIAISPDKTLKEAATIMHDRSVHRLPVLDGTDQVIGILTRGDIIRAMAASQE
>NC_010628.1|WP_012412046.1|7174497_7174914_-|hypothetical-protein
MQPAQAGFVCAAAISNHQVIFEPLSLTVEPFILSVEPLSLRVEPLSLRVEPFSLSIEPLSLTVEPFILNVEPLSLRVEPFSLSIEPFILNVEPFILNVEPLSLTTLSKVLLLYKKCYNFLVAVTLLIKSCLNRLSKYC
>NC_010628.1|WP_012412047.1|7175144_7175618_-|hypothetical-protein
MAENRISASLAPADKEAVMQAIATIREKLPFLIDLTTEDRRTIVKMGDKSRAFVSKALEVATQNPNFLPRYFDLEEMRRDLEIYEDLYPVLLSLTQLQELVDDTCIAAGSEAYAAALAIYSYAKASGDVTGLDAVIDEMGRRFSRRSKKKKPEAAAS
>NC_010628.1|WP_012412048.1|7175702_7176497_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MSYFFKSKRLRFYPWLSSLLILLIVVVVYGWALRGLKLDFELLSSSWPYITDFITRLFPPDWKVLDIAVKALIETVQMSLWGTTIGAILSVPIAIASSSNVAPGWLRSLANLLQNTVRSVPSIILGLIFVAATGLGAPAGTLALGIYTIGYLAKFYQQAIEAVDPRSLESLQVIGASKLQIAQYGILPQVLPLGLGYTFWMFEYNIRAASVLGVVGAGGIGFQLKSYIDGFEYTKATTMMLVLLVVVTVIDAFSSQLRHRLDSM
>NC_010628.1|WP_012412049.1|7176600_7177335_-|ATP-binding-cassette-domain-containing-protein
MNDYVIECHNLETAYTPSLNRPILNGINCQIKRGEFVVLLGLNGAGKSTLLRSLVGLVPSVRGEVIVNNVEMNSRTLPKIRRDVGMLFQGGGLIRQLSALENVLCGCLGKRTTWQTLLGFSKRDRFLALNLLEQLGLGELAFQKTSQLSGGQQQRVAIARTLIQSPQILLVDEPITGLDIVASQQVMETLSELHTEQGMTIVAVLHDLGIAEKYAGQAIVLDAGRVVYQGLCDNLQAQFARVSA
>NC_010628.1|WP_012412050.1|7177487_7178462_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MSVRKKSLLGAGAAFVVLTGLVVSTVGAMQATIANPTANQQTPRLLAQNLKALTIIFPSRADSTDLQNKANAVGAFLSKELGIPVVAQVGDDTAAVEALRANRADVAFLSSRPALKAKQLANASLYLAEVRPTYSGRYTYSSTFVVPKNSPLKTQNSAKATLEQLRGKKIAFTSPTSGSGFIIPVAELVKQKFVPNRDRLDGFFGQISYGGNYSKALQAVVRGQADVAVVSEYALNPPYITAEEKSKLRVLHKINGVPAHGIAIDDDVPAPTREKIINGLLKLNKSQNNKLLTDLYNSTELVRIDHDRHLATIRNALQIAGIEP
>NC_010628.1|WP_012412051.1|7178614_7179910_-|pentapeptide-repeat-containing-protein
MDAEELLEKYAEGQRNFQGAVLRKADLRNTDLMQIDLSNADLTAANFKGADLTKANLTNAKINGTDFSKASLSGANLSEVNGSELWENRNRVQSSANFNGANLTSVNFIRANLSSANLSHANLDKANLSNANLSNTKLREVSLVGADLSNSTLSSIDFNGVSLVGADLSRANLQGVNFQKANLQGAKLQAVNLQNFNLSGLNLTGSDLSGANLAQVNLKESSLQRANLERAVLQGADLKNVNLKETNLTRADLTDAATYGWLIEDADFSRAIMPDGEVYKPIAAEAEIGKQETSLEKVISMTRKVINTDNAPAPVGPYNQAIAASGQFVFIAGQIAIDPRLGDVVYTDDVKKQTEQVLANLEAILTAAGATFQDVVKTTVFLADMNDFAAVNAVYAKYFPENTAPARACVQVSRLPKDVLVEIDAIAVISG
>NC_010628.1|WP_012412053.1|7180500_7181829_-|IS701-like-element-ISNpu6-family-transposase
MDVELQILKHLARDAHPTVAIIDEYCADYKDLFKEVRNYECFKYLHLGIISTIKRKSLPEIAKVVSINSAQSLHHFLANSDWSVDELKQRRLNKLKQVLNGQAITVVIDETGDRKKGKKTDYVARQYLGSVGKIDNGIVSVNAYGVYSNITFPLMVKVFKPKGTLKEGDKYKTKIELASEMITELMEEGFQIELVLADSLYGESSQFIRKLDEYNLAYVVAIRSNHGVWLPAGQSVRANNWCKFERTFSNQKSETRYIREIIYGKKRTITYWEITTDPETMPENSTSFVMTNLQGNLKKTLGDLYGLRTWVEYGFRQCKQELGWTDYRFTNFQHIERWWEIIFCVYTMISLNSPALLALNQSRQIEAEGQRTSHIDFSNHQQWNHESGWKNVLNNLRLIVQPLLLFWLIYPWLDIFPNSQLLLGFNHLIAAMNQFKPCYASG
>NC_010628.1|WP_012412054.1|7182097_7182529_-|NUDIX-hydrolase
MTYRNPAPTVDIIIELVDRPHRPIVLIERHNLPLGWAIPGGFVDYGEAVEVAARREAEEETGLQVELVEQLLVYSDPNRDPRQHTISIVFLATATGEPKAGDDAKGVGIFEYWCVPGNLCFDHDRILRDYWRYRHYGIRPRLG
>NC_010628.1|WP_167315676.1|7182648_7182795_-|hypothetical-protein
MFDAHATRLPKGQWQSQRIEFITEQYLHGKSSKLILIVICPLSFVLCE
>NC_010628.1|WP_012412055.1|7182823_7184332_+|4-alpha-glucanotransferase
MPFPRSSGILLHPTSFPSRFGVGDLGLEAYRFIDFLKDSHQQYWQVLPLGPTGYGNSPYMCYSAMAGNPLLISPEKLRDKGLLTEEDFANLPGFPVEKVDFDQVVPIKIGLLKKACESFKVNATDIQKNEFAGFCDSKAYWLENYALFMALKDAHENASWHTWEPEFVKRKPEALAQAEERLNGDIFYYKFVQFEFFRQWSDLKSYANMRGIDIIGDIPIYVSHDSADVWAHPNIFCLDEETGEAAQMAGVPPDYFSATGQLWGNPVYNWEELQKQDFKWWVQRFEAMLDYVDIIRIDHFRGFEAYWSVPKGEETAMNGKWVEAPGDAFFEAIRQKLGKLPVLAEDLGVITLEVEALRDKYEFPGMKVLQFAFGSDPGNPFLPFNYPRNAVVYTGTHDNDTTVGWFNSANDYEKHNLLLYLGCVSPEGIHWDLIRLALSSIANQAIIPLQDVLGLGNEARMNFPSTAEGNWGWRYQAEALRDELRDRLKVLTRLNGRAPQEN

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Click the colored protein region to show detailed information

Crispr_ID: NC_010628_30

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_30

7754830-7754926

Orphan

A:N

Consensus_repeat	Method
TAACTTGTGTGTACACCGTAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_30

>merge|NC_010628|30|7754830-7754926|CRISPRCasFinder
TAACTTGTGTGTACACCGTAGCTTTATAAGGGGAGGATTAAGGAGGGGTAAAACTTTGGTTAATCAGCTATTTTAGACTTGTGTGTACACCGTAGCT

>NC_010628|30|29|7754830-7754926|CRISPRCasFinder
TAACTTGTGTGTACACCGTAGCT	TTATAAGGGGAGGATTAAGGAGGGGTAAAACTTTGGTTAATCAGCTATTTT
AGACTTGTGTGTACACCGTAGCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_041565760.1\|7750936_7751416_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366375
NC_010628.1\|WP_012412489.1\|7744680_7745361_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_010628.1\|WP_012412499.1\|7760359_7761190_-\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NC_010628.1\|WP_012412500.1\|7761517_7762603_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_010628.1\|WP_012412502.1\|7763468_7764086_-\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NC_010628.1\|WP_012412495.1\|7755288_7756011_+\|DUF475-domain-containing-protein	unknown	unknown	gnl\|CDD\|274742
NC_010628.1\|WP_012412492.1\|7749195_7749888_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_167315687.1\|7755057_7755198_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412494.1\|7750508_7750925_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412498.1\|7758958_7760128_-\|NDP-sugar-synthase	unknown	unknown	gnl\|CDD\|224129
NC_010628.1\|WP_012412496.1\|7756086_7756536_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NC_010628.1\|WP_012412501.1\|7762729_7763374_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
NC_010628.1\|WP_012412497.1\|7756753_7758772_+\|biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
NC_010628.1\|WP_052304670.1\|7752597_7754130_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_010628.1\|WP_012412491.1\|7747685_7748330_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412490.1\|7745478_7747452_-\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NC_010628.1\|WP_012412503.1\|7764235_7764589_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_010628.1\|WP_012412493.1\|7749955_7750396_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412487.1\|7742776_7743274_-\|DUF1643-domain-containing-protein	unknown	unknown	gnl\|CDD\|377919
NC_010628.1\|WP_041565758.1\|7743319_7744507_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|376146

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_041565760.1\|7750936_7751416_+\|hypothetical-protein	gnl\|CDD\|366375	pfam00931, NB-ARC, NB-ARC domain.	0.00168712
NC_010628.1\|WP_012412489.1\|7744680_7745361_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.5245e-23
NC_010628.1\|WP_012412500.1\|7761517_7762603_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	4.5825e-48
NC_010628.1\|WP_012412503.1\|7764235_7764589_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.51124e-27
NC_010628.1\|WP_041565758.1\|7743319_7744507_-\|ATP-binding-protein	gnl\|CDD\|376146	pfam18723, aGPT-Pplase1, alpha-glutamyl/putrescinyl thymine pyrophosphorylase clade 1. An alpha helical domain related to the alpha-helical DNA glycosylases, predicted to catalyze the in situ synthesis of hypermodified bases such as alpha-glutamyl, putrescinyl thymine, 5-(2-aminoethoxy)methyluridine or 5-(2-aminoethyl)uridine. The enzyme is predicted to utilize a high-energy pyrophosphate DNA base intermediate which is subject to a nucleophilic attack by the modifying moiety. Members of this clade are found in phages with hypermodified bases and eukaryotes such as fungi and stramenopiles.	7.10902e-148
NC_010628.1\|WP_012412502.1\|7763468_7764086_-\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.70893e-79
NC_010628.1\|WP_012412497.1\|7756753_7758772_+\|biosynthetic-arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
NC_010628.1\|WP_012412496.1\|7756086_7756536_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	2.04116e-92
NC_010628.1\|WP_012412501.1\|7762729_7763374_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	1.48979e-126
NC_010628.1\|WP_012412498.1\|7758958_7760128_-\|NDP-sugar-synthase	gnl\|CDD\|224129	COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis].	1.27623e-105
NC_010628.1\|WP_052304670.1\|7752597_7754130_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.27669e-15
NC_010628.1\|WP_012412495.1\|7755288_7756011_+\|DUF475-domain-containing-protein	gnl\|CDD\|274742	TIGR03716, R_switched_YkoY, integral membrane protein, YkoY family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains proteins YceF and YkoY from Bacillus subtilis. A transport function is proposed.	1.33891e-46
NC_010628.1\|WP_012412499.1\|7760359_7761190_-\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	1.31124e-33
NC_010628.1\|WP_012412487.1\|7742776_7743274_-\|DUF1643-domain-containing-protein	gnl\|CDD\|377919	pfam07799, DUF1643, Protein of unknown function (DUF1643). The members of this family are all sequences found within hypothetical proteins expressed by various bacterial species. The region concerned is approximately 150 residues long.	1.0713e-62
NC_010628.1\|WP_012412490.1\|7745478_7747452_-\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0

>NC_010628.1|WP_052304670.1|7752597_7754130_+|tetratricopeptide-repeat-protein
MTSQEQAKWCWHNWQPQAGLVLVVLDNVDDLTNWKNCRQILPTNNRFCVLITSRLRNLGLNVTEISLDELSPEKALNLLTALLGEKDRRVQREPETAVNLCKWLGYLPLGLQLVGAYLAEDPNLSLAKILQQLPTQQKSQLEAVFELSWQQLDFMTQCVGELLSLFAPDIIPWQLVESVSQQLNWAKADVDEARKQLYKRHLIQSVAEGESCYKIHPLIREFLQGKLAGLNTGDDLKKAFAAALVKIAQKIPESLTLEDIKSVQLAIPHLTEVAQNLIDAVEDENLTWVFTGLGKFYQGQGLYTLAAPWYEQGLSTVQTRLGEEHSHVATNLSWLASLYDFQGRYDQAEPLFLQALELSKRLLGDAHPDVANSLNCLANIYYYQGRYDQAEPLYLQALELRKRLLGDAHPLVANSLNCLANLYYSQRRYDQAEPLSLQALELSKRLLGDAHPDVANSLNCLANLYYSQGRYERAEPLYLQALKIYKQVFGVNHPNTVTVRQNLENARANK
>NC_010628.1|WP_041565760.1|7750936_7751416_+|hypothetical-protein
MNQNNQGNAKGWQNQVEGGTVYQGDISIYNSPTQQLHSSTPNNIPSRGVANFVGRDEKLAEVHKKLLQNDSAAILALAAMGGMGKTELATQYAQRYKDNYPGGLCWLDARKPDLAAEIVEFAKFYMKLVVCQANFAMLNLDINAPFFGEHLWFENPNKH
>NC_010628.1|WP_012412494.1|7750508_7750925_+|hypothetical-protein
MEPITASAIATLAFTKAFEKTIEKFTEAALGKMDELRKKIWGKLRGNLKAETALVAAEKGSKPDVDRVAAYLQIILHEEPEFAEEVETLAREIEAGKIVDKSTMTQINQDNAKGWQTKVEGGTVYQGDINIHHAPPNS
>NC_010628.1|WP_012412493.1|7749955_7750396_+|hypothetical-protein
MANKRETHCNNQVDTFAEALATARQMQQNWLTYGVDFVNFYVEDVDGDWLETWGHDEILGNSQLDAIKEFLVSHDSVAVKVRQHLGERSLFDFAVNLDESWRISQTNDRLSAVKNLLAGEEHSIDTDDIRLLDLADNLVVKLAEIL
>NC_010628.1|WP_012412492.1|7749195_7749888_+|hypothetical-protein
MQATEIKDKLKSLIEQASSVDHNLARRLEEINRWVKNIKPGSLTAKPFVIAFLLEVITDSTIWLIIKSLPSEEEQKAKFELMTPIERYWYGYLFPRWINASDSKFYIWKQKLMAGEFNQVDDDIIRSIAQDVVSREGSFWQRYIADLSMATDLIVSSRNNQPLCIQVTSVSEELNYQKYQAWQNTLRSWEIERGLFLSYNPKDANFVNQLVNVALYNSDYLSGGKYLKFS
>NC_010628.1|WP_012412491.1|7747685_7748330_+|hypothetical-protein
MTLTVEASSLSLNDVHRLLKLEELSVGSFADFLNLEPLTEFEQEDLLRIRNDFRRYLRLGKISEGLVKFLTIAPLMRLAGFYDVPIRLTMEDSIAIAVEDEDRRITGRMDILAINSFQSNIAPPFWVVVIETKNSAIEVGEGLPQLLTYAFKSLEQQPSVWGLVTNGLRYQFVHLRHDEQSNYQLMPLLSLNESPDAIELLQVFKGICKLANFQ
>NC_010628.1|WP_012412490.1|7745478_7747452_-|acetate--CoA-ligase
MSEPNIESILQENRLFHPPSEFSQNAHIKSLDDYKRLYEKAKADPEQFWADLAGTELEWFQKWDTVLDWQPPFAKWFVGGKMNISYNCLDRHLTTWRKNKAALIWEGEPGDSRTLTYAQLHREVCQFANVLKQLGVQKGDRVGIYMPMIPEAAIAMLACARIGAPHGVVFGGFSAEALRDRLIDATAKLVITADGGWRKDAIVPLKEQVDKALADGAVPSVENVLVVKRTGQETYMQLGGRDHWWHDLQKSASADCPAEPMDSEDMLFVLYTSGSTGKPKGVVHTTAGYNLYTHITTKWIFDLQDTDVYWCTADVGWITGHSYIVYGPLSNGATTVMYEGAPRASNPGCFWDVIEKYGVNIFYTAPTAIRAFIKMGEQHPNARNLSSLRLLGTVGEPINPEAWMWYQKVIGGDRCPIVDTWWQTETGGIMITPLPGAIPTKPGSATLPFPGIIADVVDLEGNTVPNNEGGYLAVRHPWPGMMRTVYGDPERFRRTYWEHIPPQDGKYTYFAGDGARQDEDGYFWVMGRVDDVLNVSGHRLGTMEVESALVSHPAVAEAAVVGKPDELKGEEVVAFVTLEGTYQGSEELSKELKQHVVKEIGAIARPGEIRFTDALPKTRSGKIMRRLLRNLAAGQEVSGDTSTLEDRSVLDKLREGT
>NC_010628.1|WP_012412489.1|7744680_7745361_-|tetratricopeptide-repeat-protein
MKLKSKPKSAFVQPFSCMMLTILTVISLSPLALAVSGKVSLHPPEQDAQRQPQKLAQFSDTGPSERSQMLQQANALFNQGDLTGAEENLRKLIKKFPDDAFGHFQLGNVLFRQKKPEEAISAYQEAIRLQSKYALAYNAIGMVYASQSRWDEAMTEYKKALEINPNYGEALTNFALVLWQTNKKDEALSSLEKALNIFKAQNRGEKVNQVERILKEIKTADDPSVS
>NC_010628.1|WP_041565758.1|7743319_7744507_-|ATP-binding-protein
MQVRQEIFDTYWRFAAMRQEVFFNKINNVPPPWTSDPIINTYKFCNAYRASDRVSQYLIKKVIYDQNRSQNEEEVILRILLFKIFNKIETWEYLENKIGDYITLSNFDSNVYSDILQEAMNLGYVIYTSAYMSCASKEFGYDKKHQNHLALLDKMVAQDRVVNHIVKAKNFEDVFKIIQEYPLLGKFMAYQLATDINYSEIINFEENSFTIAGPGAERGISKCFVDTDGKTYTDIIHWMTENQEKEFQRLGLNFQSLWGRPLQAIDCQNLFCETDKYCRAAFPELKSNRKKIKSKFTSTPHAIDYFYPPKWCINDKVQESLAQRLPTLEITNLQILNNSNCQQLSLELDSQVKTTSEIPNNVSKQYKKSEQETQRKKSKVLQNIEIEKHKQLCLF
>NC_010628.1|WP_012412487.1|7742776_7743274_-|DUF1643-domain-containing-protein
MDIKGYAKFDITRKYRYLLRRKWDISLPQVTFVMLNPSIADDKKNDHTLTRCINFAKSWKYGSLEVVNLFAYCATNPRELCQVDDPVGPKNNCYIQVATKRAALIILAWGAGKYPRIQNREKEVLSLISDKQPLYCLVLTKYGYPHHPLRLSVSTQPIIFPSNSL
>NC_010628.1|WP_167315687.1|7755057_7755198_+|hypothetical-protein
MRTDSSPLRLHSLNVKTLDVLTYTQITPLPLRSHTFNPLQNAPQAR
>NC_010628.1|WP_012412495.1|7755288_7756011_+|DUF475-domain-containing-protein
MLDQIFDYLDFHFSLEALIVLAILVLLEALLSADNAIALAAIAKGLEDKELERKALNFGLVVAYVLRISLILTATWVQQFWQFELLGAAYLLWLVFQHFTSEETKDEHHHGPRFNSLLQAIPVIAFTDLAFSLDSVTTAIAVSQEKWLVLTGATIGIITLRFMAGLFIRWLDEYENLEDAGYVTVAFVGLRLLLKVVNDNLVPPEWIMITAIFLILGWGFSKRVSTEVPQLEPEKSEVSK
>NC_010628.1|WP_012412496.1|7756086_7756536_-|nucleoside-diphosphate-kinase
MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLKVSKELAEQHYGVHRERPFFGSLVEFITSSPVVAMVWEGDGVVASARKIIGATNPLTSEPGTIRGDFGINIGRNLIHGSDAPETAQQEIALWFKDEELVNWQPHITPWLHE
>NC_010628.1|WP_012412497.1|7756753_7758772_+|biosynthetic-arginine-decarboxylase
MGVESTATSDEVVPVPSNGQKSEVKNHKQKKLLPPSTTTGSLPRSWKIEDSEELYRIEGWGQPYFSISAAGHVTVSPKGDRGGSLDLFELVNSMKQRNLGLPMLIRFSDILEDRIERLNACFAKAIARYNYPGVYRGVFPVKCNQERHLIEDLVKFGKPHQFGLEAGSKPELMIALAVLDTPGALLVCNGYKDREYIETAMLAQRLGQTPIIVLEQIEEVDLVIDANRQLGIKPILGVRAKLSTQGMGRWGASSGDRAKFGLTMPEVIEAVDKLREANLLDSLQLMHFHIGSQISAINVIKDAIQEASRIYVELAMLGADMKYLDVGGGLGVDYDGSQTNFYASKNYNMQNYANDIVAELKDTCAERQITVPTLISESGRAIASHQSVLIFDVLSTSDVPLDSPEPPQEGESPIINYLWESYQSINQENYQELYHDAAQFKEEAISRFNLGILRLRERAKAERLYWACCQKILNITRQQEYVPDELEDLEKIMASIYYVNMSVFQSAPDCWAIDQLFPIMPIHRLDEEPIRRGILADLTCDSDGKIDRFIDLRDVKSVLELHTYKPGEPYYLGMFLNGAYQEIMGNLHNLFGDTNAVHIQLTPKGYQIEHVVKGDTMSEVVSYVQYDSEDMVENIRQRCEKALEEKRITLAESQRLLQTYEQSLRRYTYLNS
>NC_010628.1|WP_012412498.1|7758958_7760128_-|NDP-sugar-synthase
MKAMILAAGKGTRVRPITYTIPKPMIPILQKPVMEFLLELLRQHGFDQIMVNVSHLAEEIENYFRDGQRFGVQIAYSFEGKIDDDGKLVGEAIGSAGGMRRIQDFSPFFDDTFVVLCGDALIDLDLTAAVKWHRAKGSIATIITKSVPQEEVSSYGVVVTDEEGRVKAFQEKPSTEEALSTNINTGIYIFEPEVFNYIPSDVEYDIGSQLFPKLVEIKAPFYAIPMDFEWVDIGKVPDYWRAIRGVLLGEIKNVQIPGHEVAPGIYTGLNVAVNWDKVDITGPVYIGGMTRIEDGAKIVGPAMIGPNCWICSGATVENSVIFEWSRLGPGVRLVDKLVFGRYCVDKTGAAIDVQAAALDWLITDARQIPPSHTPVERQAIEELLGTNAS
>NC_010628.1|WP_012412499.1|7760359_7761190_-|segregation/condensation-protein-A
MEASELLETITLLIYQAEQGEIDPWDVQVIEVIDRYLELMAPESIGRGYEADLSQSGQAFLSASMLVLFKANTLMQLSTVGDIQDGVLDDAILEDEDGISHHGHRLPLERQLRRRPSAMPPPKRRVTLQELIKQLQIMANQLKIVEKVSKPIRPRRLPSVQSMREALELAHQENLTEVAGELEQVLNLSARELNSEQNWLNLEQLVELWTQTKLFNQNGSGHETKHSHLVSVFWALLLLSAQSKVELFQEEFYHEIKVRLLTDSPKTSKPFEQSMN
>NC_010628.1|WP_012412500.1|7761517_7762603_-|AI-2E-family-transporter
MRRSASLQRLLIYGLSGPIIALNVWLLSVLFRYFQHPITVLSIGAILAFLLNYPVKFFERARITRTQAVIIVLLATLTLFGILGVTLVPLIIDQTIQLLNKIPDWLGASQANLEQFEMLAKQRRLPIDLRVVSSQINANIQNLVQQLASGAVGFAGTLLSGLFDVVLVIVLAFYMLLYGDRVWYGLINLLPSNIGEPLTASLRLNFQNFFLSQLLLGLFMMLTLTPIFLVMKVPFALLFAILIGISELIPFIGASLGIGLVTILVLLQNWWLAVQVAIAAILMQQLKDNLLAPRLLGNFIGLNPIWIFVAILMGFEIAGLLGTLVAVPIAGTIKGTFDAIKSGKPSNFVSTVTIARDPPPD
>NC_010628.1|WP_012412501.1|7762729_7763374_+|pyridoxamine-5'-phosphate-oxidase
MDKTVADLRKDYTLEGLSELEVDLNPFIQFKKWFDQALAGQLPEPNAMTLATVTPDGKPSARMVLLKDFDERGFAFFTNYNSRKGQELAENPLAALVFWWAELERQVRICGYVEKVSETESDQYFDTRPPNSRLGAWVSNQSEVIESREVLERRMQEFYSKYENQEIPRPPHWGGLRVIPTEIEFWQGRSSRLHDRLLYSRLDNGTWKIDRLSP
>NC_010628.1|WP_012412502.1|7763468_7764086_-|FMN-dependent-NADH-azoreductase
MVNILHIDSSPRAERSHSRELSKEFVSAWRAAHPEDAIAYRDLGHHPVPHVNEAWIAAAFSPPETHTPELAEAIRVSDELVDEFLAADRYVFGVPMYNFNIPSTFKAYIDQIVRINRTVSLDAQGFRGLVEGKKAVIITARGGDFSATSPAVAYDFQEPYLRTIFGFIGITDIQFINANSLNEGDARTQSLAEARAAIQDAIAQW
>NC_010628.1|WP_012412503.1|7764235_7764589_+|helix-turn-helix-transcriptional-regulator
MSVSKNSDACPISILMSLLSGPWTMYILWVLCNSGPTRFVALKHLVEGISTKVLTERLRMLEAAEIIYRQYEPTVPPQVTYGLTERGQELIEILHQLNVLAERWYGSEQREQGMGNG

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Crispr_ID: NC_010628_31

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_31

7769881-7771303

Orphan

A:N

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	PILER-CR
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CRISPRCasFinder
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CRT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	PILER-CR

19 spacers

The CRISPR arrays of NC_010628_31

>merge|NC_010628|31|7769881-7771303|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTTAATCCCTAATAGGGATTTTGATGAATTGCAATCACCCACTACAACAGAAAAGAGATTATGCCCTAGCAGTCGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTCTCTATCTACAAAATCAATAGCTCCAGTGACAAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTCTCTATCTACAAAATCAATAGCTCCAGTGACAAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATATGGGTAACTAATCATTCAAAAGCCTACCCACTCGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTAGATGATACGGAATCACCAACCGATTGGCTTGAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGTTTGAGCGACTCCAAACTGATGTTCGGATGAAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGTGGCGAATTGGAGAGCGATCGCTGGGATTGCCGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTGGCTTTTTCAATTGCAGAGGCAACATCTTCTTCTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTTATATTTCGCTTCCTGCGCTTGCGGAAAGTGTCTGTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATAGTTTTCTCTCTCGTCTTGAGCGCGATTCTAAGCGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGAGGATAATGTTTTCTAGTGCTGCCCTTCCCAATGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTTTTTCAGGAAGGCGAACAGTCTTTACAGGAAGAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGTGATTTTTGCTATTGTTAGTGCATCTATTATTTTTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTTTACTTTTGACCCTCCCTCCTTCTGTCCAGCGAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATACCGGTACTTTTTTGCGTTTCACTCCTGCGGTTTTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGTATGCCAAATTTCGGCAAGTTGCGCCGCGAAAGCACATGCGGTTTTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATATGGGATTAGCTATGGGGCAACTAGCCAAAGCGCTCGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT

>NC_010628|31|8|7769881-7770360|PILER-CR
GTTTTAATCCCTAATAGGGATTTTGATGAATTGCAAT	CACCCACTACAACAGAAAAGAGATTATGCCCTAGCAGTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCTCTATCTACAAAATCAATAGCTCCAGTGACAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCTCTATCTACAAAATCAATAGCTCCAGTGACAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATGGGTAACTAATCATTCAAAAGCCTACCCACTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTAGATGATACGGAATCACCAACCGATTGGCTTGAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGTTTGAGCGACTCCAAACTGATGTTCGGATGAAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTGGCGAATTGGAGAGCGATCGCTGGGATTGCC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TGGCTTTTTCAATTGCAGAGGCAACATCTTCTTCT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTATATTTCGCTTCCTGCGCTTGCGGAAAGTGTCTGT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AGTTTTCTCTCTCGTCTTGAGCGCGATTCTAAGC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GAGGATAATGTTTTCTAGTGCTGCCCTTCCCAAT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTTCAGGAAGGCGAACAGTCTTTACAGGAAGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTGATTTTTGCTATTGTTAGTGCATCTATTATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTACTTTTGACCCTCCCTCCTTCTGTCCAGCGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ACCGGTACTTTTTTGCGTTTCACTCCTGCGGTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTATGCCAAATTTCGGCAAGTTGCGCCGCGAAAGCACATGCGGTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATGGGATTAGCTATGGGGCAACTAGCCAAAGCGCTC


>NC_010628|31|30|7769881-7771303|CRISPRCasFinder
GTTTTAATCCCTAATAGGGATTTTGATGAATTGCAAT	CACCCACTACAACAGAAAAGAGATTATGCCCTAGCAGTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCTCTATCTACAAAATCAATAGCTCCAGTGACAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCTCTATCTACAAAATCAATAGCTCCAGTGACAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATGGGTAACTAATCATTCAAAAGCCTACCCACTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TAGATGATACGGAATCACCAACCGATTGGCTTGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTTTGAGCGACTCCAAACTGATGTTCGGATGAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTGGCGAATTGGAGAGCGATCGCTGGGATTGCC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TGGCTTTTTCAATTGCAGAGGCAACATCTTCTTCT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTATATTTCGCTTCCTGCGCTTGCGGAAAGTGTCTGT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AGTTTTCTCTCTCGTCTTGAGCGCGATTCTAAGC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GAGGATAATGTTTTCTAGTGCTGCCCTTCCCAAT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTTCAGGAAGGCGAACAGTCTTTACAGGAAGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTGATTTTTGCTATTGTTAGTGCATCTATTATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTACTTTTGACCCTCCCTCCTTCTGTCCAGCGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ACCGGTACTTTTTTGCGTTTCACTCCTGCGGTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTATGCCAAATTTCGGCAAGTTGCGCCGCGAAAGCACATGCGGTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATGGGATTAGCTATGGGGCAACTAGCCAAAGCGCTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT

>NC_010628|31|6|7769881-7771303|CRT
GTTTTAATCCCTAATAGGGATTTTGATGAATTGCAAT	CACCCACTACAACAGAAAAGAGATTATGCCCTAGCAGTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCTCTATCTACAAAATCAATAGCTCCAGTGACAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCTCTATCTACAAAATCAATAGCTCCAGTGACAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATGGGTAACTAATCATTCAAAAGCCTACCCACTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TAGATGATACGGAATCACCAACCGATTGGCTTGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTTTGAGCGACTCCAAACTGATGTTCGGATGAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTGGCGAATTGGAGAGCGATCGCTGGGATTGCC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TGGCTTTTTCAATTGCAGAGGCAACATCTTCTTCT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTATATTTCGCTTCCTGCGCTTGCGGAAAGTGTCTGT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AGTTTTCTCTCTCGTCTTGAGCGCGATTCTAAGC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GAGGATAATGTTTTCTAGTGCTGCCCTTCCCAAT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTTCAGGAAGGCGAACAGTCTTTACAGGAAGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTGATTTTTGCTATTGTTAGTGCATCTATTATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTACTTTTGACCCTCCCTCCTTCTGTCCAGCGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ACCGGTACTTTTTTGCGTTTCACTCCTGCGGTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTATGCCAAATTTCGGCAAGTTGCGCCGCGAAAGCACATGCGGTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATGGGATTAGCTATGGGGCAACTAGCCAAAGCGCTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT

>NC_010628|31|9|7770465-7771303|PILER-CR
	CACCCACTACAACAGAAAAGAGATTATGCCCTAGCAGTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCTCTATCTACAAAATCAATAGCTCCAGTGACAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTGGGATGCTAAACAAAAAGAATGGATTCGCGATGATA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCTCTATCTACAAAATCAATAGCTCCAGTGACAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATGGGTAACTAATCATTCAAAAGCCTACCCACTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTAGATGATACGGAATCACCAACCGATTGGCTTGAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGTTTGAGCGACTCCAAACTGATGTTCGGATGAAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTGGCGAATTGGAGAGCGATCGCTGGGATTGCC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TGGCTTTTTCAATTGCAGAGGCAACATCTTCTTCT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTATATTTCGCTTCCTGCGCTTGCGGAAAGTGTCTGT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AGTTTTCTCTCTCGTCTTGAGCGCGATTCTAAGC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GAGGATAATGTTTTCTAGTGCTGCCCTTCCCAAT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTTCAGGAAGGCGAACAGTCTTTACAGGAAGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTGATTTTTGCTATTGTTAGTGCATCTATTATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTACTTTTGACCCTCCCTCCTTCTGTCCAGCGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ACCGGTACTTTTTTGCGTTTCACTCCTGCGGTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTATGCCAAATTTCGGCAAGTTGCGCCGCGAAAGCACATGCGGTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATGGGATTAGCTATGGGGCAACTAGCCAAAGCGCTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_148220384.1\|7767902_7768283_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_010628.1\|WP_012412501.1\|7762729_7763374_+\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
NC_010628.1\|WP_012412503.1\|7764235_7764589_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NC_010628.1\|WP_012412512.1\|7772640_7773153_-\|2'-5'-RNA-ligase-family-protein	unknown	unknown	gnl\|CDD\|379265
NC_010628.1\|WP_012412502.1\|7763468_7764086_-\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NC_010628.1\|WP_012412514.1\|7776029_7776497_+\|DUF4870-domain-containing-protein	unknown	unknown	gnl\|CDD\|225833
NC_010628.1\|WP_012412500.1\|7761517_7762603_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NC_010628.1\|WP_012412519.1\|7781523_7782615_+\|calcium/proton-exchanger	unknown	unknown	gnl\|CDD\|273043
NC_010628.1\|WP_012412504.1\|7764720_7765605_-\|DUF3153-domain-containing-protein	unknown	unknown	gnl\|CDD\|371485
NC_010628.1\|WP_012412522.1\|7785747_7786485_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369367
NC_010628.1\|WP_012412509.1\|7769112_7769658_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NC_010628.1\|WP_012412507.1\|7766904_7767801_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239783
NC_010628.1\|WP_012412518.1\|7778255_7780997_-\|DUF3536-domain-containing-protein	unknown	unknown	gnl\|CDD\|212109
NC_010628.1\|WP_041566529.1\|7777656_7777902_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|372995
NC_010628.1\|WP_012412515.1\|7776551_7777649_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NC_010628.1\|WP_012412505.1\|7765631_7766174_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276939
NC_010628.1\|WP_012412521.1\|7784099_7785530_-\|NADP-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NC_010628.1\|WP_012412499.1\|7760359_7761190_-\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NC_010628.1\|WP_012412520.1\|7782795_7783932_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_010628.1\|WP_148220467.1\|7774068_7775523_-\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|227116

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_148220384.1\|7767902_7768283_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	3.84689e-19
NC_010628.1\|WP_012412501.1\|7762729_7763374_+\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	1.48979e-126
NC_010628.1\|WP_012412503.1\|7764235_7764589_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.51124e-27
NC_010628.1\|WP_012412512.1\|7772640_7773153_-\|2'-5'-RNA-ligase-family-protein	gnl\|CDD\|379265	pfam13563, 2_5_RNA_ligase2, 2'-5' RNA ligase superfamily. This family contains proteins related to pfam02834. These proteins are likely to be enzymes, but they may not share the RNA ligase activity.	1.65005e-22
NC_010628.1\|WP_012412502.1\|7763468_7764086_-\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.70893e-79
NC_010628.1\|WP_012412514.1\|7776029_7776497_+\|DUF4870-domain-containing-protein	gnl\|CDD\|225833	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown].	3.06223e-29
NC_010628.1\|WP_012412500.1\|7761517_7762603_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	4.5825e-48
NC_010628.1\|WP_012412519.1\|7781523_7782615_+\|calcium/proton-exchanger	gnl\|CDD\|273043	TIGR00378, cax, calcium/proton exchanger (cax). [Transport and binding proteins, Cations and iron carrying compounds].	3.33153e-133
NC_010628.1\|WP_012412504.1\|7764720_7765605_-\|DUF3153-domain-containing-protein	gnl\|CDD\|371485	pfam11353, DUF3153, Protein of unknown function (DUF3153). This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.	3.50007e-38
NC_010628.1\|WP_012412522.1\|7785747_7786485_+\|hypothetical-protein	gnl\|CDD\|369367	pfam07444, Ycf66_N, Ycf66 protein N-terminus. This family represents the N-terminus (approximately 80 residues) of Ycf66, a protein that seems to be restricted to eukaryotes that contain chloroplasts and to cyanobacteria.	2.49006e-41
NC_010628.1\|WP_012412509.1\|7769112_7769658_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	3.51289e-82
NC_010628.1\|WP_012412507.1\|7766904_7767801_-\|acetylglutamate-kinase	gnl\|CDD\|239783	cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino Acid Kinase Superfamily (AAK).	2.42948e-170
NC_010628.1\|WP_012412518.1\|7778255_7780997_-\|DUF3536-domain-containing-protein	gnl\|CDD\|212109	cd10797, GH57N_APU_like_1, N-terminal putative catalytic domain of mainly uncharacterized prokaryotic proteins similar to archaeal thermoactive amylopullulanases; glycoside hydrolase family 57 (GH57). This subfamily of mainly uncharacterized bacterial proteins, shows high sequence homology to GH57 archaeal thermoactive amylopullulanases (APU, E.C 3.2.1.1/41). Thermoactive APUs are type II pullulanases with both pullulanolytic and amylolytic activities. They have an acid pH optimum and the presence of Ca2+ might increase their activity, thermostability, and substrate affinity.	0
NC_010628.1\|WP_041566529.1\|7777656_7777902_+\|HNH-endonuclease	gnl\|CDD\|372995	pfam14279, HNH_5, HNH endonuclease. This domain is related to other HNH domain families such as pfam01844. Suggesting that these proteins have a nucleic acid cleaving function.	7.13779e-22
NC_010628.1\|WP_012412515.1\|7776551_7777649_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	4.99656e-72
NC_010628.1\|WP_012412505.1\|7765631_7766174_-\|hypothetical-protein	gnl\|CDD\|276939	cd15830, BamD, BamD lipoprotein, a component of the beta-barrel assembly machinery. BamD, also called YfiO, is part of the beta-barrel assembly machinery (BAM), which is essential for the folding and insertion of outer membrane proteins (OMPs) in the OM of Gram-negative bacteria. Transmembrane OMPs carry out important functions including nutrient and waste management, cell adhesion, and structural roles. The BAM complex is composed of the beta-barrel OMP BamA (also called Omp85/YaeT) and four lipoproteins BamBCDE. BamD is the only BAM lipoprotein required for viability. Both BamA and BamD are broadly distributed in Gram-negative bacteria, and may constitute the core of the BAM complex. BamD contains five Tetratricopeptide repeats (TPRs). The three TPRs at the N-terminus may participate in interaction with substrates, while the two TPRs in the C-terminus may be involved in binding with other BAM components.	0.000223497
NC_010628.1\|WP_012412521.1\|7784099_7785530_-\|NADP-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NC_010628.1\|WP_012412499.1\|7760359_7761190_-\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	1.31124e-33
NC_010628.1\|WP_012412520.1\|7782795_7783932_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	5.01886e-69
NC_010628.1\|WP_148220467.1\|7774068_7775523_-\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|227116	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane].	4.17441e-77

>NC_010628.1|WP_012412509.1|7769112_7769658_-|shikimate-kinase
MSSLLQGVNLYLIGMMGVGKTTVGPLLAKHLGYGFLDLDGVIAKATDKSINQLFAEEGEAGFRQIESDVLSQVCAFTKLTIATGGGIVLRRENWGYLHHGLIVWLDVPVELIYRRLAEDTTRPLLQDADLKGKLRSLLEQRTPLYSQADLHITVQEGETPEDIANRIIEVIPNVLKPQASH
>NC_010628.1|WP_148220384.1|7767902_7768283_-|pentapeptide-repeat-containing-protein
MSPTNSMDIEEFFSRLDAGENDFSGVDLSGAVLSEVDLSGINLSGADLSGAILCKTKLGGADLRDANLSGADLRGADLRVTRMEGVNLENANLLEVNWHGAEKYGAYFYNTVMPDGELLTEPNTYG
>NC_010628.1|WP_012412507.1|7766904_7767801_-|acetylglutamate-kinase
MTDNDSEYIRQTEATRVRVLSEALPYIQQFAGRTVVVKYGGAAMKDSTLKDKVIRDIVFLSCVGLRPIVVHGGGPEINSWLDKLGIEPQFKNGLRVTDAATMDVVEMVLVGRVNKEIVALINQAGGLAVGLCGKDGNLFTARPQGQEGIGFVGEVSNVNIKILDTLASNGYIPVVSSVAADETGQAYNINADTVAGEIAAALGAEKLILLTDTSGILKDYKDQSTLIPKVDIREARELIVNGIVTGGMIPKVNCCVRSLAQGVRAAHIIDGRIPHALLLEIFTDVGIGTMILGSQFTS
>NC_010628.1|WP_012412505.1|7765631_7766174_-|hypothetical-protein
MSAESLEIAKTFYQTGKIAFENGRYREAVENLEKASALLARNSRFGGEVEICLVTAYEAAGRTDDAIALCERLKRHPYIEISKQARQMVYILKAPKLKRPSEWMTEIPDLDTVQENELKISIAAKPTKSSVPQKPKPTEPEFVDLSQVNTRDNRFIWVALIAIGLTISYLVWLNFSGTPG
>NC_010628.1|WP_012412504.1|7764720_7765605_-|DUF3153-domain-containing-protein
MVSTSSIFGKILLWLIRPFSFVLTLNGRNRMNRVFPMRNPILWLVLLTSLLLTGCVKYDVGLNFDNSNSGEFVQHIKLGERLTSFSGDSVYEWLNSIERRSRQLEGKTQRVSQEEIIVTIPFSSGTELQEKFNEFFNSRTNQSSEAVQSKSDSELPKIESNVLLEQNNFLLLVRNRLIYDLDLRSLALIASKGNVLTNAGSILDLEFSLKTPWGAKNIQLTETAIEPEKNGNQLVWKLQPGQLNHIEAVFWLPSPLGIGALLIILFVWGGLYLRYNFMPDPRTQLLPKAAATQE
>NC_010628.1|WP_012412503.1|7764235_7764589_+|helix-turn-helix-transcriptional-regulator
MSVSKNSDACPISILMSLLSGPWTMYILWVLCNSGPTRFVALKHLVEGISTKVLTERLRMLEAAEIIYRQYEPTVPPQVTYGLTERGQELIEILHQLNVLAERWYGSEQREQGMGNG
>NC_010628.1|WP_012412502.1|7763468_7764086_-|FMN-dependent-NADH-azoreductase
MVNILHIDSSPRAERSHSRELSKEFVSAWRAAHPEDAIAYRDLGHHPVPHVNEAWIAAAFSPPETHTPELAEAIRVSDELVDEFLAADRYVFGVPMYNFNIPSTFKAYIDQIVRINRTVSLDAQGFRGLVEGKKAVIITARGGDFSATSPAVAYDFQEPYLRTIFGFIGITDIQFINANSLNEGDARTQSLAEARAAIQDAIAQW
>NC_010628.1|WP_012412501.1|7762729_7763374_+|pyridoxamine-5'-phosphate-oxidase
MDKTVADLRKDYTLEGLSELEVDLNPFIQFKKWFDQALAGQLPEPNAMTLATVTPDGKPSARMVLLKDFDERGFAFFTNYNSRKGQELAENPLAALVFWWAELERQVRICGYVEKVSETESDQYFDTRPPNSRLGAWVSNQSEVIESREVLERRMQEFYSKYENQEIPRPPHWGGLRVIPTEIEFWQGRSSRLHDRLLYSRLDNGTWKIDRLSP
>NC_010628.1|WP_012412500.1|7761517_7762603_-|AI-2E-family-transporter
MRRSASLQRLLIYGLSGPIIALNVWLLSVLFRYFQHPITVLSIGAILAFLLNYPVKFFERARITRTQAVIIVLLATLTLFGILGVTLVPLIIDQTIQLLNKIPDWLGASQANLEQFEMLAKQRRLPIDLRVVSSQINANIQNLVQQLASGAVGFAGTLLSGLFDVVLVIVLAFYMLLYGDRVWYGLINLLPSNIGEPLTASLRLNFQNFFLSQLLLGLFMMLTLTPIFLVMKVPFALLFAILIGISELIPFIGASLGIGLVTILVLLQNWWLAVQVAIAAILMQQLKDNLLAPRLLGNFIGLNPIWIFVAILMGFEIAGLLGTLVAVPIAGTIKGTFDAIKSGKPSNFVSTVTIARDPPPD
>NC_010628.1|WP_012412499.1|7760359_7761190_-|segregation/condensation-protein-A
MEASELLETITLLIYQAEQGEIDPWDVQVIEVIDRYLELMAPESIGRGYEADLSQSGQAFLSASMLVLFKANTLMQLSTVGDIQDGVLDDAILEDEDGISHHGHRLPLERQLRRRPSAMPPPKRRVTLQELIKQLQIMANQLKIVEKVSKPIRPRRLPSVQSMREALELAHQENLTEVAGELEQVLNLSARELNSEQNWLNLEQLVELWTQTKLFNQNGSGHETKHSHLVSVFWALLLLSAQSKVELFQEEFYHEIKVRLLTDSPKTSKPFEQSMN
>NC_010628.1|WP_012412512.1|7772640_7773153_-|2'-5'-RNA-ligase-family-protein
MPYALVYYPNINTQQINKIRQKYDPQFYLIEPHITLIFPLLGFIGEDRLTIHIKNILSAWKIFPIHLQGFQKSWDEYLFLTVQEGKENAIKLHNDLYTGILAEYCRENTAFVPHLTLGVFSKNRVQYLQALEEAQQLDLDYCCMVEKLNLLKITDVNRQIVWNQEYILPS
>NC_010628.1|WP_148220467.1|7774068_7775523_-|BamA/TamA-family-outer-membrane-protein
MLVGGKNPEALADSQPSTQDGASGIVTPEATIHIEGEYAKYGDYIGVSLGDSQTLEISQKIVKDIQIRFINDKGLPIKGRTQKDFIIGLLRLKPGQVFREDLLQADLQRLRRLESFNQVNVYPKEDASSVNLIYAIKERSFPSLILGGGNNDDVGLYGRVGYKDENVSGLNDKLDTILQFSTKDVQFDGQFTSRYRSEEPNRLGYSIRGFRNRNTSGTFNEDIRLANGDKVREGRFGGSVALLRAFDEWDTSVALNYTRISLRDREYNVVQVDRLGSPLSVSGTGIDDLFTVSFAVSRDQRDRRDNPTQGSILTFSTEQAIPIGLGNISSNRLRGDYIQYFPVNWIGNGRPTNNPEMLAINLQIGTTIGDFPPADAFNIGGIDSVRGYGYGKVASGRSYGLASVEYRFPIFQSIGGVVFTDLASDFGSSETVLGEPGVLRDKPGSGFGYGLGLRLNSPFGLIRGDLGISDQGEVRFEVTTGQRF
>NC_010628.1|WP_012412514.1|7776029_7776497_+|DUF4870-domain-containing-protein
MRQKPKQQMRIWAVLCHFSALLGWILLFFLVFIGIPLYLPLNLLAPLIIWHFKKSQYPWIDFQGKESLNFQFSLTLYTLIVIAISLLFLLTSFGLVMINNGSSNEIKNILDGLLIVLMSLILFKLILQSFVVTFASVKAYKGEYYRYPFTIRVLR
>NC_010628.1|WP_012412515.1|7776551_7777649_+|Gfo/Idh/MocA-family-oxidoreductase
MIGIAIAGTGFGQKVHIPGFQAHPQTEVVAVYHRDINKAKAIAESHNIPHASDSLADIVALPEVQAVSISTPPFLHYEMAKTVLQAGKHLLLEKPTTLNAVEAKELYQLAKAKGVIATVDFEFRFVPAWQLFAELLSEDYVGELRLIKIDWLGSSRADISRPWNWYSDKDKGGGALGSLGSHAFDYIHWLFGPVQRLNAHLSTAIPARVDPVSGESKLVNTDDNCILTLELANGTPCQLSISAVVHAARTHWVEVYGDRGTLIVGSENQKDYIHGFRVWGSQPGKPLTEIEIPNRLIFPKNYADGRISAFIRVVDQWVQGIERNQEITPSLREGIYSQLLMDLSHESHTKASWVDVPSLERFLSN
>NC_010628.1|WP_041566529.1|7777656_7777902_+|HNH-endonuclease
MSKTPRIRIPPEVKKYVFERDKYQCQSCGKTTTETHISIDHIIPLARGGQNDISNLQTLCLTCNQQKTDNIDPRFRRYFQL
>NC_010628.1|WP_012412518.1|7778255_7780997_-|DUF3536-domain-containing-protein
MTSAAEMPASSGSTLTLHSDPNNTKETDPLRKANGVYVTVHGHFYQPPRENPYLDAIERQPSAAPFHDWNERIHWECYRPNAFARVLNDQGEVVGIVNNYEYFSFNIGPTLMSWLERYDVEVYQRILEADAKSSQRLHGHGNAIAQVYNHIIMPLANERDKHTQIRWGKEDFRSRFGRDPEGMWLAETAVDYATLEALVAEGIRFIVLAPSQALRCRPLPTPDHPHPEWIEVGGSQIDSTRPYRCYLKPTLDTSSSPLSALGYAPPEALATSPNDSSTEELPYIDIFFYDGPISRDMGFSDVVYNSSHFAGRIGSAVRGDHRLAQLISVATDGETFGHHKKGTEKTLAYAFTKEFPQQGWTVTNFAHYLSLNSPSWEVELKSVTAWSCAHGVGRWEDDCGCGGEGGVWHQKWRRPLRDALNWLRDQLTEVYEEHGRQLFRDPWQTRDEYIQVMRDRSATNVNRFLARHQTHKLTAAEQVDALRLLEMQRHALLMFTSCGWFFEEISRPEGTQILRYAARALELAGEVAGVQLEKGFVKRLGLAPSNVDEFKHGAEIYRQLVLTAQLGFKQVASHYAITSLFTNQKPAQTHNSLPRKDVADKQSQRYHKKVYCYAANELDYQLQRMGSLTLAVGNLKLVSEITWESEHLVFAVLHLGGWDFHCCIQQFTGRRDYSQLKEKLFGALKQASAAHTILAMTQLFGEEAFSLQNLFAEERHRIMRLLSQETLTRLGQLYTQAYRDNYGVLMAFHRDEIAVPQELQVAADIALGHRCLMTLRSLEQDIADSQKSWSHILELEAIATEAKHLRCRLNIPDGKQMLEQLIARSLWQLLHDANGSFNADIQLLERLIDVGDQLNIDISLQRSQELYFSCLHSQIAPVCITSLGNEGDNQCLQLLKLGKKLAVDVSAISNQLG
>NC_010628.1|WP_012412519.1|7781523_7782615_+|calcium/proton-exchanger
MSTKNIILFVLLLFIPVSLVAHFLEWGELIVFITAGLAILPLAAWMGTATEEIAVVVGPSLGGLLNATFGNATELIIALVALNAGLIDVVKASITGSIISNLLLVMGFSMLLGGLRYKEQTFQPIVARVNAASMNLAVIAILMPTAMNYTSQGINEQTLQNLSIAVAVVLILVYALTLLFSMKTHSYLYDVGVAEIEEEEAPHAKPNMMLWVSVLLVCTLLVALESEMLVDSLEVATSQLGLTALFTGVILVPIVGNAAEHATAVTVAMKDKMDLSLSVAVGSSMQIALFVAPVLVIAGRVLGQPMDLDFKPFELVAVVVSVLIANSISSDGKSNWLEGTLLLAAYTVLGFAFYFHPVMESMG
>NC_010628.1|WP_012412520.1|7782795_7783932_+|serine/threonine-protein-kinase
MSYCLNPHCPKPENPNDVKFCRTCGSKLLLKERYRAIKPIGQGGFGRTFLAVDEDKPSKPRCVIKQFYPQSQGTNTLAKAIELFNQEAVQLDELGKHPQIPELLAYFTQEDRQYLVQEFIDGHNLAQELAHRGAFNETQIRQLLNDLLSVLQFCHARHVIHRDIKPENIILRSGDRKLVLVDFGAAKSAIGNALNQTGTSIGSPEYVAPEQMRGRAVFASDIYSLGATCINLLTQRSPFDSYDINNDTWVWQQYLKTPISNQLSRILNKMLESIPVRRYQTVDEVLKDLNQHSQVAATPAIKPKPIPQSPPNSPPAFVSPSPSQIDLELEEMKTQFLGGNKPQPNKIQPPISTSQPTSKNEIDQELEELKAKYLGNNP
>NC_010628.1|WP_012412521.1|7784099_7785530_-|NADP-dependent-phosphogluconate-dehydrogenase
MTLQSFGVIGLAVMGENIALNVERNGFPIAVYNRSREKTDAFMAQRATGRNVKAAFTLEEFVALLERPRKILVMVQAGKPVDAVIAQLKPLLEEGDIIIDGGNSWFEDTERRTQELEPAGLRYLGMGVSGGEEGALNGPSLMPGGTTSSYEFLSPIFNKIAAQVDDGPCVTYIGPGGSGHYVKMVHNGIEYGDMQLIAEAYDLLKNVAGLNPSQLHDVFAEWNTTDELDSFLIEITKNIFPYIDPETNKPLVDLIVDAAGQKGTGRWTVQTALELGVAIPTITAAVNARIISSIKDERVAASKVLTGPSGKYDGQTKDFINKVRDALYCSKICSYAQGMALLSTASKTYNWNLDLGEMARIWKGGCIIRARFLNKIKKAFSENPALPNLLLAPEFKQTILDRQTAWREVIATAATVGIPVPAFSASLDYFDSYRRDRLPQNLTQAQRDYFGAHTYLRLDKPGSFHTEWVPIAEAGK
>NC_010628.1|WP_012412522.1|7785747_7786485_+|hypothetical-protein
MLAFVLALVVGIGSLAIYIAAFFFPEIHRKNDFIWSGVGLFYALVLWVFAPRITGGLLLGHVASVALLVWFGWQTLSLRRQLTPQAQQTQVPSAETVKTGIQEQVNKFSLQERLGQLQKTLVSTFSGAKDKVQQTVSKKTPTTPKPEDITSVLAEKPTVEIIDKTTAIPEKPAEETVTTDTEAKAESVPEAIPPHPPSLELVEAAQPDFEIEDKQPIPVEQIAPDAVLAPPAEAPPEEIPPNQGS

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Crispr_ID: NC_010628_32

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_32

7930349-7930453

Orphan

A:N

Consensus_repeat	Method
ACCTAAACCTCCATAGAGTTTGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_32

>merge|NC_010628|32|7930349-7930453|CRISPRCasFinder
ACCTAAGCCACCATAAAGATAGTCATCACCTAAACCTCCATAGAGTTTGTCATTATCCTCATCACCATAAAGATAGTCATTACCTAAACCTCCATAGAGGTTGTC

>NC_010628|32|31|7930349-7930453|CRISPRCasFinder
ACCTAAGCCACCATAAAGATAGTC	ATCACCTAAACCTCCATAGAGTTTGTCATTATCCTCATCACCATAAAGATAGTCATT
ACCTAAACCTCCATAGAGGTTGTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012412619.1\|7916728_7918387_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412629.1\|7935123_7936011_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NC_010628.1\|WP_012412623.1\|7923293_7923743_+\|YlqD-family-protein	unknown	unknown	gnl\|CDD\|378550
NC_010628.1\|WP_012412631.1\|7937311_7938874_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
NC_010628.1\|WP_012412635.1\|7943160_7943916_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|271323
NC_010628.1\|WP_041565779.1\|7943893_7944172_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271325
NC_010628.1\|WP_012412624.1\|7923801_7924326_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412634.1\|7941662_7942967_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|273555
NC_010628.1\|WP_148220468.1\|7918392_7919271_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NC_010628.1\|WP_012412630.1\|7936007_7936736_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NC_010628.1\|WP_012412632.1\|7939050_7940382_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225459
NC_010628.1\|WP_012412628.1\|7932602_7934750_-\|intein-containing-tRNA-splicing-ligase-RtcB	unknown	unknown	gnl\|CDD\|376465
NC_010628.1\|WP_012412625.1\|7924731_7926033_+\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NC_010628.1\|WP_012412633.1\|7940447_7941518_-\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|273596
NC_010628.1\|WP_012412622.1\|7921301_7923251_+\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|341295
NC_010628.1\|WP_012412621.1\|7919286_7919628_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_086000600.1\|7930860_7931908_-\|ISKra4-like-element-ISNpu15-family-transposase	unknown	unknown	gnl\|CDD\|239785
NC_010628.1\|WP_167315691.1\|7920109_7920259_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412626.1\|7926194_7927109_+\|DUF4351-domain-containing-protein	unknown	unknown	gnl\|CDD\|227751
NC_010628.1\|WP_052304671.1\|7927322_7927784_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369942

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012412633.1\|7940447_7941518_-\|homoserine-O-acetyltransferase	gnl\|CDD\|273596	TIGR01392, Homoserine_O-acetyltransferase, homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes. [Amino acid biosynthesis, Aspartate family].	1.22661e-166
NC_010628.1\|WP_012412629.1\|7935123_7936011_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	4.37017e-29
NC_010628.1\|WP_012412623.1\|7923293_7923743_+\|YlqD-family-protein	gnl\|CDD\|378550	pfam11068, YlqD, YlqD protein. The structure of a representative of this family has been solved (Structure 4dci) and found to form a tetrameric structure of prefoldin-like architecture with the beta-barrel core and helical coiled coil tentacles. This suggests that this family may act as molecular chaperones.	4.28198e-39
NC_010628.1\|WP_041565779.1\|7943893_7944172_-\|hypothetical-protein	gnl\|CDD\|271325	cd14955, NHL_like_4, Uncharacterized NHL-repeat domain in bacterial and archaeal proteins. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	0.00575926
NC_010628.1\|WP_012412635.1\|7943160_7943916_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|271323	cd14953, NHL_like_1, Uncharacterized NHL-repeat domain in bacterial proteins. This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	1.68819e-08
NC_010628.1\|WP_052304671.1\|7927322_7927784_-\|hypothetical-protein	gnl\|CDD\|369942	pfam08548, Peptidase_M10_C, Peptidase M10 serralysin C terminal. Serralysins are peptidases related to mammalian matrix metallopeptidases (MMPs). The peptidase unit is found at the N terminal while this domain at the C terminal forms a corkscrew and is thought to be important for secretion of the protein through the bacterial cell wall. This domain contains the calcium ion binding domain pfam00353.	3.08517e-09
NC_010628.1\|WP_012412634.1\|7941662_7942967_-\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|273555	TIGR01326, Includes:_O-acetylhomoserine_sulfhydrylase, OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. [Amino acid biosynthesis, Aspartate family, Amino acid biosynthesis, Serine family].	0
NC_010628.1\|WP_148220468.1\|7918392_7919271_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	4.43336e-13
NC_010628.1\|WP_012412632.1\|7939050_7940382_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|225459	COG2907, COG2907, Predicted NAD/FAD-binding protein [General function prediction only].	1.95234e-44
NC_010628.1\|WP_012412628.1\|7932602_7934750_-\|intein-containing-tRNA-splicing-ligase-RtcB	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	8.19462e-148
NC_010628.1\|WP_012412625.1\|7924731_7926033_+\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	1.21626e-160
NC_010628.1\|WP_012412622.1\|7921301_7923251_+\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|341295	cd17640, LC_FACS_like, Long-chain fatty acid CoA synthetase. This family includes long-chain fatty acid (C12-C20) CoA synthetases, including an Arabidopsis gene At4g14070 that plays a role in activation and elongation of exogenous fatty acids. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions.	0
NC_010628.1\|WP_012412631.1\|7937311_7938874_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	7.91462e-36
NC_010628.1\|WP_086000600.1\|7930860_7931908_-\|ISKra4-like-element-ISNpu15-family-transposase	gnl\|CDD\|239785	cd04252, AAK_NAGK-fArgBP, AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to the Amino Acid Kinase Superfamily (AAK).	0.00631584
NC_010628.1\|WP_012412630.1\|7936007_7936736_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	3.57118e-52
NC_010628.1\|WP_012412626.1\|7926194_7927109_+\|DUF4351-domain-containing-protein	gnl\|CDD\|227751	COG5464, COG5464, Uncharacterized conserved protein [Function unknown].	8.64283e-25

>NC_010628.1|WP_052304671.1|7927322_7927784_-|hypothetical-protein
MSPLQNDYLSAFGAGGSSTLNGGNDNDTLIGGDGSDVLTGGGGNDFLTGGANQDTFVFNSSNEGLDVIYDFGIIDYIQLSAVGFGGSLSPNSILPSQFTLGTTATTKDQRLIFDSSSGALYFDQDGSNSGFAQKKFAQLNGVSSLSVSNFVVV
>NC_010628.1|WP_012412626.1|7926194_7927109_+|DUF4351-domain-containing-protein
MTYDNTLKYLVEQYPEDFIRYLLASEATDIQILKTELNQEPIRADSVTFLQTANQILHLEFQTLPASTPPLPLRMLDYWVRLYLQYNCDIEQVVIFLKPTTSEAVFVDQFTARNTTHRYRVIRIWEQDPEPLLLSPGLLPLATLARTDSPQSLLQQVAVQVSMIEEAATKQSISVCTQLLAGLVFEPELIRQFLRREDMRESAIYQEILQEGLQEGRQRGIEQGLEQGIEQGLEQGLEQGLEQGRQSELRLVIRLLTRRLGSINSQLQSRLQELSLAQLENLGEVLLDFASEADLMNWLNTIEN
>NC_010628.1|WP_012412625.1|7924731_7926033_+|2-oxo-acid-dehydrogenase-subunit-E2
MSIHEVFMPALSSTMTEGKIVSWVKSPGDKVEKGETVVVVESDKADMDVETFYEGFLAHIIVEAGETAPVGSAIAFIAETEAEIEQAKSLANSGGVAATTTSAPEPIPATASVVTPALASQNGSNHKEGRLVASPRARKLAKELKVDLTTLQGSGPYGRIVAEDVEALSNKGKQPATAPVAPPATVPTSAPIASPAPRTPAPAPVVAAVPGQIVPLTTFQNAVVRNMVATISVPVFRVGYTITTDGLDKLYKQIKSKGVTMTALLAKAVAVTLQKHPLLNASYSDQGIVYHSDINISVAVAMDDGGLITPVLQNADAVDIYSLSRTWKSLVERARAKQLQPQEYNSGTFTLSNLGMFGVDKFDAILPPGQGSILAIGASRPQVVATPDGLFGVRQQMQVNITSDHRIIYGAHAAAFLQDLAKLIETNPQSLTL
>NC_010628.1|WP_012412624.1|7923801_7924326_-|hypothetical-protein
MSAKLKFILIVILGIFATAGAGVYITQRQQSAPIVETSYGQTQQVRAIHQSQEVVAYPDRSNYKTIPLENINSSLQGSDPATLALNAFDSIPAVEGTRKVEVAYPQRNQALVTITQFKRGDDAVSAVKYRVEMSAFGRSLFISSPPVWQIVWAGSQVECSAGSLSRTKLNHICH
>NC_010628.1|WP_012412623.1|7923293_7923743_+|YlqD-family-protein
MDVSKSNLLLKRVVNVKVIVTPLWKEEVQQQLQTQINQLDQQLQQLDVEGQRAIAAIQKQSLQPPGPQTLQQIDNIQLQVNQKKSEFLEQKNQLLQNLQQVQFLQQDQEVNQFQMEGFFRVEIGDNLISKMQVEIVLRDGVVEEIRGDI
>NC_010628.1|WP_012412622.1|7921301_7923251_+|long-chain-fatty-acid--CoA-ligase
MSKTQTASSFLSNISEQEREALKRLVDYTKVESLPEVWPLASQRFGDVVALRSPHAKPEIVITYTQLAEQIQLFAAGLQALGVKLGDRISLISDNSPRWFIADQGIMTAGAVDAVRSSQAEKEELLFIIANSGSTAIVVEDLKTLKKLQDRIQDLPIQFAILLSDEAPPTDGTLKVLNFAQLIEIGKNHNFVPVKQNRDALATLIYTSGTTGRPKGVMLSYSNLMHQITTFGTVLQPNAGDIVLSILPSWHSYERTVEYYLLSQGCTQIYTNLRSVKGDLRQFKPNYMVGVPRLWESIYEGVQKQFREQPAKKQRLINFLLGISDKYIKARRVAQGLDLNNLHASAIERLTAKIQAAALLPLHALGERLVYAKVREATGGHVKQMISGGGALPRHIDNFFEIIGVQILQGYGLTETSPVTHVRRPWRNLIGASGLPLPATEAKIVDPETKAPLPIEKRGLVLLRGPQIMQGYYQNPEATAKAIDAEGWFDSGDLGWLTPQDDLVLTGRAKDTIVLTNGENIEPQPIEDACLRSPYIDQIMLVGQDQRSLGALIVPNVEALEKWAQNDPATSSPSQKIDLESRMIQDLFRQELNREVQNRPGYRPDDRIGTFKLILEPFSIENGLMTQTLKVRRHVVTERYRDIIDGMFA
>NC_010628.1|WP_167315691.1|7920109_7920259_-|hypothetical-protein
MLNLLHESQTALTPKQPKVGQFIKKLHKLLELTKKSLQQALFVGAIHRS
>NC_010628.1|WP_012412621.1|7919286_7919628_-|hypothetical-protein
MIRKQITEFSLEDGTKFLAEVDEPENSNSLVRVARPDAGQIVVEAKKKFDEVLDQIQPVASAIIIKLSQLNTPADEVEVKFGIKLNAVAGAIFTSVGGEANYEITLKWKQDKA
>NC_010628.1|WP_148220468.1|7918392_7919271_-|trypsin-like-peptidase-domain-containing-protein
MADNYIPAFRSAIARIFHPNGAVVGVGFLVSGRSQNYILTCAHVVTSALSLPEDIVEAPSHDICLDFPLIAPGQKLKAKVVFWQPVVNNVSTSEPEDIAGLQIEGQLPHEAQPIKLIWANNVWGHPFRIFGFPHGHNDGVWSTGVLRDGQGKGWVQLEDSKVTGYRIEPGFSGAPIWDETLAGVVGMAVAAEKQREDIKTAFMIPVDVLSKAWDEITLPISSNAHTQNSPSRVQQLKIKTLQQRFEVLSSDYEAAYNQLNYTLAASDRNIIQRQINTILQELGRVESELNAI
>NC_010628.1|WP_012412619.1|7916728_7918387_-|hypothetical-protein
MKNSLDLRKKSLEQLIARLTTDIESLSNQIGWTLNNVQKDQLERQLENKFKEIEKAESELSQLNQETLEQVDPDKIPFTNRDAAISDITANNSPTYRLITAPKGYGKTEFLKQIQKRFQELQWCCAYASMSGDQNIEDLEKELANSLSLKIEEGNELPWGERLGLLLHRNWARWQSQGQKGIVLLIDLDGNAPQKQRLSEIFVQLKELGWRIENCLKELQFFKDNSKSLRVVIAARCLTDLPPDRILPKLILSPFNWEVIQDTATKYLKPIEMTSESLALLAGHLLYLTGGHPGGIAEALKVYRSGGYTVNLFLKTYGSKLWEKTLKHCRDQIKESLTKENNNLYESIEKLSIFPILNGNWILKEAVRRFQLPFSDDSFKLNAELTKTSIFTRDKTIIKDGMTRRLLVIGLLRESSPDSFQKLCSEAAQICWEYVHELKSKNDSAVAGTWSMQYFFQSLQQHAGFINSGTDSLTYRKELRKTFFDETVEETIGIFRNTDREQTHEFLSTLKSEVEHDWEFQFLVNYYLHNEEYNDTPYNYLIHKLDEAIQNN
>NC_010628.1|WP_086000600.1|7930860_7931908_-|ISKra4-like-element-ISNpu15-family-transposase
MTPEEEQQIKEYSRAIAKILYKSTTGEQLTSLAKIEEVVRSQMRKHVMPEVGFFIENATGESRGYKRKIKSIIGELPITNSQAQKLEIRPHNQLSPYLEACCLRISASVSYQRAAEDIEYLTGVEVSKSVQQRLVHRQNFELPQVESTVEELSVDGGNIRIRTIKGQVCDWKGYKATCLHEKQAIAASFQENSLVIDWVKSQSIAPILTCLGDGHDGIWNIVRDFAPEHQRREVLDWFHLMENLHKIGGSNQRLNQAKILLWQGKVDDAIAVFADCQLKQAFNFCTYLEKHRHRIVNYQYYQAEQICSIGSGAIESTVKQIDRRTKISGAQWKSDNVPQVLAQRQSLS
>NC_010628.1|WP_012412628.1|7932602_7934750_-|intein-containing-tRNA-splicing-ligase-RtcB
MPYEKLEITTPAPVLSWANHSLGPEETKMAKNVASLPFVFKHVALMPDVHLGKGALVGSVIATKEAIIPAAVGVDIGCFIGDTLIPLADGKSYRIKDLMDWGTEFIVYACTPTGKIVAAQATAKLTRRNAPLVKVILDNGEEIICTPDHQFMLRDGTYKEAQLLQAETSLMPFYSKTDKDGYTLITQPYSSRWQKAHWIIARSGLLGKVPRFEGQKTFIHHQNFDESDNRPENLEFMGNRDHSAYHRSLVERNQHWHSAEFEEKRVASLAQKAKTSEGYQYYAERGTRNIFQYMEQQPEHFKNAVAGNGNRGKQYLVEYNKTEKGRGKSQEIANRYYTCEICGVDVKTPIGLHNHRRKEHQCNHKVVAVNLLNYTEDVYCLTVPEYHNFALKAGVFVHNCGMSAIKTSFTAEQLEGKLKKIRLDIEAAIPTGFNENKDVEKSVSNWQHWDDFKDLHRGVQDLQGKAMKQMGSLGGGNHFIEVCLDTENQVWLMLHSGSRNIGNKLAQCHIYTARELAKMAGNKLPDPDLAHFVAGTREFQAYWHDLQWSQNYARVNRDVMMARFKHIVEKHLVGGKATKPLLQVNCHHNYAEKEVHFDEDVYVTRKGAVRAQTEDYGIIPGSMGAKSFIVKGKGNAHSFCSCSHGAGRLMSRNKAKNVYTLDDLIEQTNGVECRKDEGVLDEIPGAYKPIEQVMANQADLVEVVATLKQVLCVKG
>NC_010628.1|WP_012412629.1|7935123_7936011_+|methyltransferase-domain-containing-protein
MAVRQDTIWERFLSPVMRLLIDEEGLRRYADSIDWEKEGDRFRRDDVIIPSYYSSQNFHGITGGYLTYNAAVSYDPITQYVVPPNETIVRQALIDAVKVKPRRILDLGCGTGSTTLMLKRAFPEAEVIGLDLSPYMLVRAEDKARNSGLEIVWRHGNAEKTSFRDATFDLVTASLLFHETPNEVSLAILQESFRLLVTGGQVLILDGNQKTLRQLEWLNDVFEEPYIREYAAGSIEANMGAAGFEAVRSQDVWWINQVTGGVKPIATENVRRYTPTSVDNNDLEGLGSPAFGIIA
>NC_010628.1|WP_012412630.1|7936007_7936736_+|HAD-family-phosphatase
MSLKAVLFDFNGVIINDEPIHLQLIDEILIEENLQPQKVSERQASLGRSDRACFQQLLANRGRVANENYLTQLLYRKAQAYTVELEKIEKLPLYPGVEDLIYQVRSRNLKLGLVSGALRQEIELVLHRAKLDQHFKIIVAGDDITTSKPEPDGYLLAVKCLNKEYPELNLQPQECLAIEDTPAGIAAAKRSQMQVVGVANTYPFHMLQRCCNWTVDYLSDLELERVQKIYSQKEPQPSATEC
>NC_010628.1|WP_012412631.1|7937311_7938874_+|NAD(P)/FAD-dependent-oxidoreductase
MKPDYLIVGSGLSALVFGALMANSGKTVQILEAHEHPGGFGHTFTMAKKYTFNAQFHYVWDCGEGQTVNRVLKKLGLDREVTFERYDPDGFDHMRMPGYALDIPSEPEELIQRLSALFPAYSVGGASRSENRIRQFVNDVEKTSAGLKRLAPPVKPIELFKHTNEVFCTVQYLNSTLQDVFDKFQLPQAAQTLLALQWPDFLLPPNQLSFYAWVALFKGYQAGAFYPTQHFEHVINSLVKVIESHGGQVLLNHEVTNFRVIDRTVTGVEAMDLTTHQTHEFTGDTVICNIDPKKAAKMIGESKFSKTVRRKLNYEYSASNYMAYCVVKDLDLRDYGFGKWNVFHTGHQDLNEAFAQMYEHNDFSNPSFAITTPTLLTQASRDCPEDCQIVEFLTVANYNYFKQLRQSDRKAYNQKKQEIFASILDVMEKEYVPNFRKHLLFHITGSPTTNERYCWCPNGNSYGSNLTPRNMGLGRLNHETSLNHFYFCNASSGYPGFAPTFWTGALLYQRLSGDVLLGNS
>NC_010628.1|WP_012412632.1|7939050_7940382_+|FAD-dependent-oxidoreductase
MRIAVIGGGASGMVTAYLLDKQGHHITVFERQPMLGGHIRTLNKNVKPNQSDCNEMLESGVLEFPTVFHNFVALMQELGVELEPIRVGSALFPKDGSPFFSKVTNENNYTGIQRFIEYLRFDTIHTRSLGLWLKTRFAQMEDFYNRPLSQYVNNQSISNTWLKLLTMYSYSMPFELIDNFPAEMGIPMLRDYLAVKWLRIKGGVYSYIEKILERFQGEVLLNVEIVNISRSPDGVIIQRSHGEIQEFDKVVFATPPDQVIALLADPTEAEIKRFSDWKANYATTTIHTDIFMYDHHHIHHPSEFDFFQTDTQWGYNSCLNQLCGISSPQHYFLSFQLEELIAKDRIIHTQEHHTPLYTTESFRYRDEVVATNGENNTYYAGAYLGDGLHEGAIASAFRVAQLIGSPLAVSISGFNDRNADTVEIAADTAGIGKYLTHPRFHRS
>NC_010628.1|WP_012412633.1|7940447_7941518_-|homoserine-O-acetyltransferase
MIYSDFISPQTQFYQLTVPFQLESGKVLIGVQVAYRSWGELNAQGDNGVLICHALTGSADADDWWEPLFGSGKAFNPDRDFIVCSNILGSCYGTTGPTTINPTTRKPYGVSFPKITIRDMVRLQAVLLEYLGVQSLRFVIGGSLGGMQSLEWALLYPDKVKSIAPIAVSGRHSAWCIGLSEAQRQAIYADPNWQGGNYTLDAPPNQGLAVARMMAMSTYRSWDSFTTRFGRQYDPSEKFAIASYLQHQGQKLTERFDANTYIILTHAMDGHDIARDRTAPNLSDYESVLGSIQQPTLVVAIDSDILYPPVEQQELANLIPNAQLSWLKSTHGHDAFLIDMAALNEIIQQNHEFVLF
>NC_010628.1|WP_012412634.1|7941662_7942967_-|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MSEQYRFETLQVHAGQEPAPGNNARAVPIYQTTSYVFDDTEHGARLFALQEFGNIYTRIMNPTTDVFEKRIAALEGGVAALATASGQAAQFLAISTIAQAGDNIVSTSFLYGGTYNQFKVSLPRLGINVKFVEGDDPESFRQAIDARTKALYVETIGNPQYNIPDFAALAHIAHENGIPLIVDNTFGAGGYLARPIEHGADIVVESATKWIGGHGTSIGGVIVDSGKFDWGNGKFPLFTEPAPGYHGLNFQEVFGPSGSFGNIAFIIRARVEGLRDFGPSLSPFNAFLLLQGLETLSLRVDRHVSNALELARWLEQQEQVLWVNYPGLPNHSYHERAKKYLRHGFGGVLNFGIKGGLEAGKAFINHVKLASHLANVGDAKTLVIHPASTTHQQLSDEEQLSAGVTPDLVRVSVGIEHIDDIKEDFQQAFGQVKI
>NC_010628.1|WP_012412635.1|7943160_7943916_-|PEP-CTERM-sorting-domain-containing-protein
MSSLASFNNFIGGLTINKSQQVFGALFDGSLFREEDGNVSNFASGLPPTLEELAFDQNNNLFVASFTEGTVSKISPEGSVTTFVSGLSGPFGIAFTVDSLIIGDNSNNGNGPGVIKQATMSGNVTDLFKSIPGRIIDLEVNPTAKSFFVANQGDFFTNSGRLSAINIISNNQINTFATGFLGGGDAFPREIEFDSSGNLYVADAQKLYKISKDQLTTIPEPTSVFALLIFGIIGAGSALKKKKYHRLQEVR
>NC_010628.1|WP_041565779.1|7943893_7944172_-|hypothetical-protein
MTGISQKVAVAAAGTALSLTVMKVNSAQAIQIIPSGYQVQGISTGSFEFVQVGGLAVDSSNNIYVARNLFSGSSDLLKITHPIRRCVISCQF

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Crispr_ID: NC_010628_33

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010628_33

7964655-7964732

Orphan

A:N

Consensus_repeat	Method
AGAAAAACCCGCAGCTAAAGCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010628_33

>merge|NC_010628|33|7964655-7964732|CRISPRCasFinder
AGAAAAACCCGCAGCTAAAGCCGCAGTAGGCGAAAAACCAGCCGCCGCAACAGAAGAAAAACCCGCAGCTAAAGCCGC

>NC_010628|33|32|7964655-7964732|CRISPRCasFinder
AGAAAAACCCGCAGCTAAAGCCGC	AGTAGGCGAAAAACCAGCCGCCGCAACAGA
AGAAAAACCCGCAGCTAAAGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010628.1\|WP_012412652.1\|7965199_7965694_-\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|222840
NC_010628.1\|WP_012412648.1\|7960975_7961779_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565780.1\|7953343_7953532_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041566549.1\|7957718_7959641_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	unknown	unknown	gnl\|CDD\|235362
NC_010628.1\|WP_041565784.1\|7970819_7971080_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412647.1\|7960029_7960902_+\|D-alanyl-D-alanine-carboxypeptidase-family-protein	unknown	unknown	gnl\|CDD\|367124
NC_010628.1\|WP_012412645.1\|7956174_7957488_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412654.1\|7969653_7970079_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412656.1\|7973922_7974897_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|236489
NC_010628.1\|WP_041565783.1\|7969057_7969564_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_041565785.1\|7972960_7973239_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412644.1\|7954581_7956147_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376625
NC_010628.1\|WP_012412643.1\|7953728_7954490_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NC_010628.1\|WP_083782492.1\|7971700_7971787_+\|ESPR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379020
NC_010628.1\|WP_012412657.1\|7975046_7975976_+\|TIGR04168-family-protein	unknown	unknown	gnl\|CDD\|275026
NC_010628.1\|WP_041565782.1\|7963176_7964232_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NC_010628.1\|WP_041565781.1\|7962555_7962918_-\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_148220390.1\|7952404_7953025_+\|hypothetical-protein	unknown	unknown	unknown
NC_010628.1\|WP_012412653.1\|7966115_7967192_+\|magnesium-protoporphyrin-IX-monomethyl-ester-(oxidative)-cyclase	unknown	unknown	gnl\|CDD\|237458
NC_010628.1\|WP_167315693.1\|7973320_7973482_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010628.1\|WP_012412644.1\|7954581_7956147_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|376625	pfam01832, Glucosaminidase, Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase. This family includes Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EC:3.2.1.96. As well as the flageller protein J that has been shown to hydrolyze peptidoglycan.	3.94919e-07
NC_010628.1\|WP_012412652.1\|7965199_7965694_-\|TM2-domain-containing-protein	gnl\|CDD\|222840	PHA01886, PHA01886, TM2 domain-containing protein.	1.61015e-13
NC_010628.1\|WP_012412656.1\|7973922_7974897_-\|quinolinate-synthase-NadA	gnl\|CDD\|236489	PRK09375, PRK09375, quinolinate synthase NadA.	0
NC_010628.1\|WP_012412643.1\|7953728_7954490_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	2.08166e-45
NC_010628.1\|WP_041566549.1\|7957718_7959641_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG	gnl\|CDD\|235362	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG.	0
NC_010628.1\|WP_083782492.1\|7971700_7971787_+\|ESPR-domain-containing-protein	gnl\|CDD\|379020	pfam13018, ESPR, Extended Signal Peptide of Type V secretion system. This conserved domain is called ESPR for Extended Signal Peptide Region. It is present at the N-terminus of the signal peptides of proteins belonging to the Type V secretion systems, including the autotransporters (T5aSS), TpsA exoproteins of the two-partner system (T5bSS) and trimeric autotransporters (TAAs). So far, the ESPR is present only in Gram-negative bacterial proteins originating from the classes Beta- and Gamma-proteobacteria. ESPR severely impairs inner membrane translocation, suggesting that it adopts a particular conformation or it interacts with a cytoplasmic or inner membrane co-factor, prior to exportation. Deletion of ESPR causes mis-folding of the TAAs passenger domain in the periplasm, substantially impairing its translocation across the outer membrane.	0.00295584
NC_010628.1\|WP_012412647.1\|7960029_7960902_+\|D-alanyl-D-alanine-carboxypeptidase-family-protein	gnl\|CDD\|367124	pfam02557, VanY, D-alanyl-D-alanine carboxypeptidase.	1.83381e-11
NC_010628.1\|WP_041565782.1\|7963176_7964232_+\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.10346e-13
NC_010628.1\|WP_012412653.1\|7966115_7967192_+\|magnesium-protoporphyrin-IX-monomethyl-ester-(oxidative)-cyclase	gnl\|CDD\|237458	PRK13654, PRK13654, magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional.	0
NC_010628.1\|WP_012412657.1\|7975046_7975976_+\|TIGR04168-family-protein	gnl\|CDD\|275026	TIGR04168, Ser/Thr_protein_phosphatase_family_protein, TIGR04168 family protein. Members of this uncharacterized protein family are restricted, in 49 of 50 genomes, to organisms with a family TIGR04167 radical SAM protein, which occasionally is a selenoprotein.	6.7555e-171

>NC_010628.1|WP_041565782.1|7963176_7964232_+|DMT-family-transporter
MTRPKRPHRLIHRVSGQTYLWLATLIFAASGAVTRRLTEIGAEHFIGERNPISLCNVLFVGNLCALILLILIYGRQWNKATLKQLSRTDWVSLTAVAILSGALAPGLIFQALSVTGVNNVILVGRLEPPLTLALSVWLLRERVNIWEFIGAIAAFAGVILTIILQPPTEAMMNMGGFSLGIGELLAAVGSIAATASTIIGKKYLSQIPLGIYSIFRTALGTIIFFFIALVLYGKDHFADVLSPFLWQWMFLYGGLIVVLGQSFLIKGLKTSTVSTASLIGSFGPIVGILAAYLILGEAPTLPQYIGGSVILVGIFLSQVGNWRKTSSIASGKVSSIPAQQQVETDMGFKGL
>NC_010628.1|WP_041565781.1|7962555_7962918_-|hypothetical-protein
MKLAPLLTSFALVGFFTVWDVPLKAINPSLVQASAAEELSVAQKLDLLTKSKGQIGSGDQLRRFFFADLEPIGIQVGGAGHVVNLYNKANNVTFAYCSHYDVIVAIKKGKVTKFEPSEVK
>NC_010628.1|WP_012412648.1|7960975_7961779_+|hypothetical-protein
MGQAWNNVQKHRQAKGKFYELMSKADDVIVIHYSCESFYDRPDGSSPRITSIAVRNLESGQTTSFSIHQVAERKGFSAIALEQHYDELEKLMLDEFYNYVRRHASHIWLHWNMRDINYGFPAIAHRYKVLQGEPEEISESKLVDLSRLLIAIYGISYIQHPRLNSLVEKNSITYRDFLDGKGEADAFINKEYVRLHQSTLRKVDVLANIVERTANGSLKTNSSSKDIYGNYFTALIELIKENPVISGVLGLISFVSAVIGIISVFIK
>NC_010628.1|WP_012412647.1|7960029_7960902_+|D-alanyl-D-alanine-carboxypeptidase-family-protein
MKLTIRKQKDITRFIRKASFISIVIGIIFVLVASNEITHHQFARTSQPLNVCSTTISSPCIDTSKEITPKPFIPNPELNSKQRFLSAINQKLPTIPQSGTYEYTLLRAYGAVFVNQDIRIKLPPKDIFVNEQETQEFQANLTMGHVDGTNDCYLQKSAADALNKARVQQHIPLKSGYGSGDCTRTFNTNLRFWQKYANNQVLAKVQQGKETKILGLVAPPGTSQHLWGLAIDLRVGSKEQRKALNQNGWFQTVENDVPHWTYVGLTEDNLPLFGFNKQVVRGITYWITPL
>NC_010628.1|WP_041566549.1|7957718_7959641_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-enzyme-MnmG
MTMHNSVEFQDAFDVIVVGAGHSGCEAALASARLGCRTLLLTLNLDRIAWQPCNPAVGGPAKSQLTHEVDALGGEIGKVADRTYLQKRILNSSRGPAVWALRAQTDKREYAAVMKNIVENQENLTIRESMVTDLVLGANDEVIGVETYFGVGFRCKAVILTTGTFLGGKIWVGNKSMPAGRAGEFAAEGLTQTLNRLGFETGRLKTGTPARVDKRSVDYSKMLIQPGDEDVRWFSFDPEAWVEREQMPCYITRTTTETHRLIQDNLHLSPVYGGWVEAKGPRYCPSIEDKIVRFADKESHQIFIEPEGRDIPELYIQGFSTGLPENLQLQMLRTLPGLEKCVMLRPAYAVEYDYLPATQCYPTLMTKKVAGLFCAGQINGTTGYEEAAAQGLVAGINAARFVHSQEMIVFAREQSYIGTLVDDLCTKDLREPYRMLTSRSEYRLLLRSDNADQRLTTLGREIGLIDDRRWDLFTQKQANIITEKQRLQATRVKEHDEMGIAIASDTQQAIKGSITLNDLLRRPGFHYVDLDRFGLGNPNLNRAEKEGAEIDIKYYGYLARQQNQIDQIARQAHRQLPADLDYTTIDTLSKEAREKLTHVKPLTLGQAARIGGVNPADVNALLLYLELRKINSQQEFPALA
>NC_010628.1|WP_012412645.1|7956174_7957488_-|hypothetical-protein
MLQEASTRLIVPEPSEDLIANEPWSIENYADGLMDELFADIDYILDVSDNLPSQTVRHGRQNKARRDSPPEYVPLQTVTIPQIILPNGQSVTQNNNKHLSTVVFDNTTIKPVSRKRQKSSRTLGKLLIVGTTLGVAITGILYLVQSGVVYLLNPNLTQQALLAPQTQSQLPGKTEIEADLVDYMLGALAVIDKQELKGNQKSFSSGFSSQTNTNQIALGNGQITGNLPPLPLLANNTPPASNRSGSVVERIYVPVYQAPSPMRYALPAIPGSPTLLPQVANALQAYPPNMVKSALNTVRQAAKPVTVNMLAAAVRAELKPIAGRTAPITVRQTPKPLPALPVVPLRAALAPESEPTITQEQVYPATAIAVAPSNTLEGLLELGNKSAALFKIDGVTRRINMGESIGQSGWTLVEVSNGEAVIRRNGEVRSIYAGQKL
>NC_010628.1|WP_012412644.1|7954581_7956147_+|glucosaminidase-domain-containing-protein
MPLLDDLVNNYSNKDLVKIFTQVGIESTKITDINRQILKEVTLAQWLLESTRAKSDLAVKANNFAGLKWRIPDMKGFAEPLKIKVPSEPKEVEFCKFTDIDAFIIGYWKFLTRTQYKGLEEYTNTPENFLGFLKAKGYSSDPKYVSKVVDLLPEAQKLLANAGGVTIPASVEQLQLIRVPKEVELGQNFRVEGVAPLTNSGKVLSITSDDQFLALSVAISQDGKWQFDFVFKQEGDRRMIITVDDQTLEIPIKVVVPFDNKDDENTQQPTASSFPGAKVIKLDGSVGIGGVNKSADVKAIKGRLYELGYKWVGDPDSADRDRGLFDAIKLFQSIIAGRSTVNGDGRVDVGGITHRWLQAANAPRWELMPKSDPNNGLVNGELEDTQDNHDFGTHWLADVIKKIAQDYQKSYRNTHPLAAPFAINDVSLPHGGDTPDHHGHETGMMCDIYLPQKNGNFGGIVWSSSNYDRDAARAILKSITNQKLVRAVFFNDQQLIKEGLCVSLNGHDNHIHFEINPPVRS
>NC_010628.1|WP_012412643.1|7953728_7954490_+|N-acetylmuramoyl-L-alanine-amidase
MKFGIDMGHNCPPDTGATGIKQEDALTKAVGTQLIQKLRAANHTAIDCTPTSASSVTDSLRQRTNKANANNVNVYVSIHFNKFNAKAHGTEIYAISNASQGIAESVLKEIVQLGFYNRGVKDTGFFVLKNTQMPAILIECCFCDAKVDMDLFDVEKMAEAIKDGLIGQPKPKEPKADKKYILEITTKTFLKPSTEQASDLPKDSIFEIEPGDYPVLDVSFEENHYSVKWPDQSKGNRNEHFVYAGHAKVIEKD
>NC_010628.1|WP_041565780.1|7953343_7953532_-|hypothetical-protein
MTAQEALNLVDTLLCSTFGQRLNDVQSVVLLESWLGHTYAEIAEQIHISYEHDYIKQVGSQL
>NC_010628.1|WP_148220390.1|7952404_7953025_+|hypothetical-protein
MMKLSQTIPVLFLGAILAVLSPELCAAFNVQEVASLGQTSSDLPVVKSAGLSPDMDVPWSKAVRIVDPFEGEFLGVFDRNSLDGYLYREGSKQVISLWTPSSIRVLVTVNSGQAKSSFYTAGYVYPRHDFIRFVTTKKVDKILLKVREKVFKLDGSIGSFAVSQELATALKNAPDENLNIRLILEGGQTVDSEIGKGTVKGWRSIY
>NC_010628.1|WP_012412652.1|7965199_7965694_-|TM2-domain-containing-protein
MNLENNQHKDRLLVSYILCAAFFFGLGGLHRFYNGKIGTGLLWLLTGGVFGIGQFVDLFLMSNMVDEYEHKLRLKAGVSPFGVPLNQAVVASQVHPPTGNQLMIKLIEAAENKGGILTVTQGVKFTGASFAEVEATLNEMYKSGYVKIDNDPNTGAVIYHFHEL
>NC_010628.1|WP_012412653.1|7966115_7967192_+|magnesium-protoporphyrin-IX-monomethyl-ester-(oxidative)-cyclase
MVDSLKKPGFEEIRPGIKVPAKETLLTPRFYTTDFDEMARMDISVNEDELQAILEEFRTDYNRHHFVRDAEFEQSWDHIDGETRKLFVEFLERSCTAEFSGFLLYKELGRRLKGKSPVLAECFNLMSRDEARHAGFLNKALSDFNLSLDLGFLTKSRNYTFFKPKFIFYATYLSEKIGYWRYITIYRHLEAHPEDRVYPIFRFFENWCQDENRHGDFFDAIMKSQPQILNDWKARLWSRFFLLSVFATMYLNDIQRKDFYATLGLDAREYDIHVIQKTNENAGRVFPLMLDVENPEFYQRLDTCISNNEKLGAIANSNTPKFLQLFQKLPLYISNGWQLLRLYLMKPIDTVSAQGAVR
>NC_010628.1|WP_041565783.1|7969057_7969564_+|hypothetical-protein
MNPQNSFTNPYPLQVALTDAQWYGFLAEDKLNNPQTFYDIHPALRAIIREWVRLKVKPTKTISSQRYLNGIKRAFGTQTKLYVWTGVILGALLEAGYRAELRGNDLCLNCSIRKPSNPYTAWEKYRAIAPIYSEWVLDTPKGYWLPELYEGMDNIAAKYDQRTSAIRA
>NC_010628.1|WP_012412654.1|7969653_7970079_-|hypothetical-protein
MQVYLNIPSSTEVNELFLLENLTKKQIIDRLEDLLKKEHVFVLAVADSVFNDADKEEARDLVTLNEYLDKENIVVSKGDFHLLAVRVVKKFVELYGIKPRRVNRKGPNGDFKNKSYAYTDKQLRVIDEVLETVPHVRNPRK
>NC_010628.1|WP_041565784.1|7970819_7971080_+|hypothetical-protein
MSNLIQMARDVNGYTKGKCRPATNIISIINDQPRLQKDKRLMVPISHEELEAAHSFASSLGVSTSYLVRQLLKTAIESQCEVGYGR
>NC_010628.1|WP_083782492.1|7971700_7971787_+|ESPR-domain-containing-protein
MELWGCLKYFRLIFSRNTQCFKVASEIS
>NC_010628.1|WP_041565785.1|7972960_7973239_+|hypothetical-protein
MEKIKKTKQTAVRFDQSTWEWLEQESLRTGKTPSALLREGVELLKAEVRVLADLKAQFEASGVAYPSMKTQTATGIRQLPLRGFEVNQTANR
>NC_010628.1|WP_167315693.1|7973320_7973482_+|hypothetical-protein
MAKVIRNGKVVTFNPNKYPRGSHGRFKETPDAPKVTRGVQLTSKYWLSYCQAP
>NC_010628.1|WP_012412656.1|7973922_7974897_-|quinolinate-synthase-NadA
MFTTALAQRENTQLGELPLDLFAAIQSLKKELNAVILAHYYQEPDIQDIADFIGDSLQLARAAEKTNADVIVFAGVHFMAETAKILNPDKLVLLPDLNAGCSLADSCPPEAFAAFKAAHPDHLVVSYINCSADIKAMSDIICTSSNAVKIVQQIPKEQPIIFAPDRNLGRYVMEQTGRDLVLWQGSCVVHETFSEKKIVQLKIAHPEAEAIAHPECESSVLRHASFIGSTAALLKYCQNSPTKEFIVATEPGIIHQMQKLAPDKHFIPAPPMNNCACNECPFMRLNTLEKLYWAMKNRTPEITMLEDIRLAALRPMQRMLEMSV
>NC_010628.1|WP_012412657.1|7975046_7975976_+|TIGR04168-family-protein
MTSQETQSINLKIAVVGDIHDQWEVKDGVALKHLGVDLVLFVGDFGNESVEVVRAIASLDIPKAAVMGNHDAWYTATEWGRKKAPYDRSKEDWVQDQLDLLGSSHVGYGKLDFPAWNLTVVGGRPFTWGGPEWKFAEICKERYGVTSLEESADRIFKAVKSAAYETIIFLGHNGPSGLGDRPEDPCGKDWHPIGGDFGDPDLGEAISQALTAGKTIPLVTFGHMHRDLRHTKKVQRKPIFRSPEGTIYLNAASVPRIVEDGGEKLRNFSIVTVEAGVVSQVSLVWVGNDFQVAKEEILYERSHPVVQSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010628_28	28.1\|7053125\|43\|NC_010628\|CRISPRCasFinder	7053125-7053167	43	NC_010628.1	7053167-7053209	0	1.0
NC_010628_28	28.1\|7053125\|43\|NC_010628\|CRISPRCasFinder	7053125-7053167	43	NC_010628.1	7053083-7053125	2	0.953

1. spacer 28.1|7053125|43|NC_010628|CRISPRCasFinder matches to position: 7053167-7053209, mismatch: 0, identity: 1.0

atcgcttgcattatgaatgcattagcccgctttgtgaatgcga	CRISPR spacer
atcgcttgcattatgaatgcattagcccgctttgtgaatgcga	Protospacer
*******************************************

2. spacer 28.1|7053125|43|NC_010628|CRISPRCasFinder matches to position: 7053083-7053125, mismatch: 2, identity: 0.953

atcgcttgcattatgaatgcattagcccgctttgtgaatgcga	CRISPR spacer
atcgcttgcattatgaatgcgctagcccgctttgtgaatgcga	Protospacer
********************..*********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010628_15	15.29\|3340252\|32\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	3340252-3340283	32	NZ_CP026695	Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP3, complete sequence	44680-44711	1	0.969
NC_010628_29	29.1\|7171902\|25\|NC_010628\|CRISPRCasFinder	7171902-7171926	25	MN709127	Escherichia virus Ec_Makalu_002, complete genome	54079-54103	4	0.84
NC_010628_29	29.1\|7171902\|25\|NC_010628\|CRISPRCasFinder	7171902-7171926	25	MN882349	Escherichia virus Ec_Makalu_003, complete genome	54289-54313	4	0.84
NC_010628_7	7.42\|1604564\|34\|NC_010628\|CRT,PILER-CR,CRISPRCasFinder	1604564-1604597	34	NC_003216	Listeria phage A118, complete genome	37585-37618	6	0.824
NC_010628_7	7.42\|1604564\|34\|NC_010628\|CRT,PILER-CR,CRISPRCasFinder	1604564-1604597	34	AJ242593	Bacteriophage A118 complete genome	37585-37618	6	0.824
NC_010628_7	7.42\|1604564\|34\|NC_010628\|CRT,PILER-CR,CRISPRCasFinder	1604564-1604597	34	DQ003642	Listeria phage A006, complete genome	34880-34913	6	0.824
NC_010628_24	24.2\|4949103\|33\|NC_010628\|CRISPRCasFinder	4949103-4949135	33	CP003957	Rhodococcus opacus PD630 plasmid 8, complete sequence	64727-64759	6	0.818
NC_010628_24	24.2\|4949103\|33\|NC_010628\|CRISPRCasFinder	4949103-4949135	33	NZ_CP021355	Rhodococcus sp. S2-17 plasmid pRB98, complete sequence	356160-356192	6	0.818
NC_010628_27	27.4\|6982915\|35\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	6982915-6982949	35	NZ_CP019190	Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 plasmid pATCCBAA1673_01, complete sequence	81826-81860	6	0.829
NC_010628_33	33.1\|7964679\|30\|NC_010628\|CRISPRCasFinder	7964679-7964708	30	NC_025443	Salmonella phage 9NA, complete genome	19119-19148	7	0.767
NC_010628_15	15.4\|3338435\|33\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	3338435-3338467	33	NZ_CP007647	Lactobacillus salivarius strain JCM1046 plasmid pMP1046A, complete sequence	59876-59908	8	0.758
NC_010628_15	15.4\|3338435\|33\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	3338435-3338467	33	NZ_LT604075	Lactobacillus salivarius isolate LPM01 plasmid II	195264-195296	8	0.758
NC_010628_31	31.3\|7770071\|34\|NC_010628\|PILER-CR,CRISPRCasFinder,CRT	7770071-7770104	34	AP013518	Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S31-C15	11343-11376	8	0.765
NC_010628_31	31.5\|7770219\|34\|NC_010628\|PILER-CR,CRISPRCasFinder,CRT	7770219-7770252	34	AP013518	Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S31-C15	11343-11376	8	0.765
NC_010628_33	33.1\|7964679\|30\|NC_010628\|CRISPRCasFinder	7964679-7964708	30	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	37275-37304	8	0.733
NC_010628_5	5.5\|1229200\|34\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	1229200-1229233	34	NC_015708	Pseudoalteromonas sp. SANK 73390 plasmid pTML1 carrying thiomarinol biosynthesis cluster	44938-44971	9	0.735
NC_010628_15	15.4\|3338435\|33\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	3338435-3338467	33	NZ_KP738729	Aeromonas sp. Ne-1 plasmid pNe-1, complete sequence	33786-33818	9	0.727
NC_010628_27	27.7\|6983129\|33\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	6983129-6983161	33	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	99844-99876	9	0.727
NC_010628_5	5.1\|1228917\|35\|NC_010628\|CRISPRCasFinder,CRT	1228917-1228951	35	MK250021	Prevotella phage Lak-B2, complete genome	117387-117421	10	0.714
NC_010628_5	5.1\|1228917\|35\|NC_010628\|CRISPRCasFinder,CRT	1228917-1228951	35	MK250024	Prevotella phage Lak-B5, complete genome	111124-111158	10	0.714
NC_010628_5	5.1\|1228917\|35\|NC_010628\|CRISPRCasFinder,CRT	1228917-1228951	35	MK250028	Prevotella phage Lak-B9, complete genome	115250-115284	10	0.714
NC_010628_5	5.1\|1228917\|35\|NC_010628\|CRISPRCasFinder,CRT	1228917-1228951	35	MK250023	Prevotella phage Lak-B4, complete genome	117290-117324	10	0.714
NC_010628_5	5.1\|1228917\|35\|NC_010628\|CRISPRCasFinder,CRT	1228917-1228951	35	MK250025	Prevotella phage Lak-B6, complete genome	114309-114343	10	0.714
NC_010628_5	5.1\|1228917\|35\|NC_010628\|CRISPRCasFinder,CRT	1228917-1228951	35	MK250022	Prevotella phage Lak-B3, complete genome	114324-114358	10	0.714
NC_010628_5	5.1\|1228917\|35\|NC_010628\|CRISPRCasFinder,CRT	1228917-1228951	35	MK250027	Prevotella phage Lak-B8, complete genome	117489-117523	10	0.714
NC_010628_5	5.1\|1228917\|35\|NC_010628\|CRISPRCasFinder,CRT	1228917-1228951	35	MK250026	Prevotella phage Lak-B7, complete genome	117488-117522	10	0.714
NC_010628_5	5.1\|1228917\|35\|NC_010628\|CRISPRCasFinder,CRT	1228917-1228951	35	MK250020	Prevotella phage Lak-B1, complete genome	115230-115264	10	0.714
NC_010628_7	7.19\|1602896\|37\|NC_010628\|CRT,PILER-CR,CRISPRCasFinder	1602896-1602932	37	MG945509	UNVERIFIED: Microviridae sp. isolate 1761-1801, complete genome	4558-4594	10	0.73
NC_010628_15	15.4\|3338435\|33\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	3338435-3338467	33	AP013454	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S33-C36	9834-9866	10	0.697
NC_010628_15	15.6\|3338582\|35\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	3338582-3338616	35	MH572446	Microviridae sp. isolate SD_MC_32, complete genome	1594-1628	10	0.714
NC_010628_27	27.3\|6982844\|34\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	6982844-6982877	34	KY290950	Aeromonas phage 59.1, complete genome	15654-15687	10	0.706
NC_010628_31	31.10\|7770572\|35\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	7770572-7770606	35	LT598654	Phage NCTB genome assembly, complete genome: monopartite	65984-66018	10	0.714
NC_010628_31	31.15\|7770931\|36\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	7770931-7770966	36	MN038175	Panteoa phage Phynn, complete genome	62639-62674	10	0.722
NC_010628_7	7.2\|1601648\|34\|NC_010628\|CRT,PILER-CR,CRISPRCasFinder	1601648-1601681	34	JX409894	Streptococcus phage LYGO9, complete genome	12370-12403	11	0.676
NC_010628_7	7.2\|1601648\|34\|NC_010628\|CRT,PILER-CR,CRISPRCasFinder	1601648-1601681	34	MK448956	Streptococcus phage Javan48, complete genome	34740-34773	11	0.676
NC_010628_7	7.2\|1601648\|34\|NC_010628\|CRT,PILER-CR,CRISPRCasFinder	1601648-1601681	34	MK448749	Streptococcus phage Javan39, complete genome	36322-36355	11	0.676
NC_010628_7	7.2\|1601648\|34\|NC_010628\|CRT,PILER-CR,CRISPRCasFinder	1601648-1601681	34	JX409895	Streptococcus phage JX01, complete genome	24217-24250	11	0.676
NC_010628_7	7.2\|1601648\|34\|NC_010628\|CRT,PILER-CR,CRISPRCasFinder	1601648-1601681	34	MH853356	Streptococcus phage LF2, partial genome	26652-26685	11	0.676
NC_010628_7	7.58\|1605727\|34\|NC_010628\|CRT,PILER-CR,CRISPRCasFinder	1605727-1605760	34	MG592546	Vibrio phage 1.179.O._10N.286.45.F12, partial genome	28628-28661	11	0.676
NC_010628_7	7.58\|1605727\|34\|NC_010628\|CRT,PILER-CR,CRISPRCasFinder	1605727-1605760	34	MG592623	Vibrio phage 1.257.O._10N.286.46.A4, partial genome	29491-29524	11	0.676
NC_010628_15	15.32\|3340470\|35\|NC_010628\|CRISPRCasFinder,CRT,PILER-CR	3340470-3340504	35	CP033549	Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-4, complete sequence	3225-3259	11	0.686

1. spacer 15.29|3340252|32|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026695 (Nostoc sp. 'Lobaria pulmonaria (5183) cyanobiont' strain 5183 plasmid pNLP3, complete sequence) position: , mismatch: 1, identity: 0.969

gctcacgatctgctcacgtctctacaataaaa	CRISPR spacer
gctcacaatctgctcacgtctctacaataaaa	Protospacer
******.*************************

2. spacer 29.1|7171902|25|NC_010628|CRISPRCasFinder matches to MN709127 (Escherichia virus Ec_Makalu_002, complete genome) position: , mismatch: 4, identity: 0.84

ggcatttgaaaggttggcattttca	CRISPR spacer
tacatttgaaatgttgacattttca	Protospacer
 .********* ****.********

3. spacer 29.1|7171902|25|NC_010628|CRISPRCasFinder matches to MN882349 (Escherichia virus Ec_Makalu_003, complete genome) position: , mismatch: 4, identity: 0.84

ggcatttgaaaggttggcattttca	CRISPR spacer
tacatttgaaatgttgacattttca	Protospacer
 .********* ****.********

4. spacer 7.42|1604564|34|NC_010628|CRT,PILER-CR,CRISPRCasFinder matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 6, identity: 0.824

tctcctcctcaatatctttaagttttagtttctt	CRISPR spacer
tttcctcctcaatatctttaatttttggtcgctc	Protospacer
*.******************* ****.**. **.

5. spacer 7.42|1604564|34|NC_010628|CRT,PILER-CR,CRISPRCasFinder matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 6, identity: 0.824

tctcctcctcaatatctttaagttttagtttctt	CRISPR spacer
tttcctcctcaatatctttaatttttggtcgctc	Protospacer
*.******************* ****.**. **.

6. spacer 7.42|1604564|34|NC_010628|CRT,PILER-CR,CRISPRCasFinder matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 6, identity: 0.824

tctcctcctcaatatctttaagttttagtttctt	CRISPR spacer
tttcctcctcaatatctttaatttttggtcgctc	Protospacer
*.******************* ****.**. **.

7. spacer 24.2|4949103|33|NC_010628|CRISPRCasFinder matches to CP003957 (Rhodococcus opacus PD630 plasmid 8, complete sequence) position: , mismatch: 6, identity: 0.818

atctcgtcctacggcaacgttcgcccagctagt	CRISPR spacer
accccgacctacgtcaacgttcgcccagctggc	Protospacer
*.*.** ****** ****************.*.

8. spacer 24.2|4949103|33|NC_010628|CRISPRCasFinder matches to NZ_CP021355 (Rhodococcus sp. S2-17 plasmid pRB98, complete sequence) position: , mismatch: 6, identity: 0.818

atctcgtcctacggcaacgttcgcccagctagt	CRISPR spacer
accccgacctacgtcaacgttcgcccagctggc	Protospacer
*.*.** ****** ****************.*.

9. spacer 27.4|6982915|35|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019190 (Salmonella enterica subsp. enterica serovar Poona str. ATCC BAA-1673 plasmid pATCCBAA1673_01, complete sequence) position: , mismatch: 6, identity: 0.829

attcaagattatttggggcatcggaatattaatca	CRISPR spacer
attcaggattatttggggcaccggaatatccggca	Protospacer
*****.**************.********. . **

10. spacer 33.1|7964679|30|NC_010628|CRISPRCasFinder matches to NC_025443 (Salmonella phage 9NA, complete genome) position: , mismatch: 7, identity: 0.767

agtaggcgaaaaaccagccgccgcaacaga	CRISPR spacer
attccacgcaaaaccagcagccgcaacagg	Protospacer
* *  .** ********* **********.

11. spacer 15.4|3338435|33|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007647 (Lactobacillus salivarius strain JCM1046 plasmid pMP1046A, complete sequence) position: , mismatch: 8, identity: 0.758

gaaatcagaaacatctttgatttttttgaccat	CRISPR spacer
taaatcatcaacatctttgatttttcttaaagt	Protospacer
 ******  ****************.* *  .*

12. spacer 15.4|3338435|33|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT604075 (Lactobacillus salivarius isolate LPM01 plasmid II) position: , mismatch: 8, identity: 0.758

gaaatcagaaacatctttgatttttttgaccat	CRISPR spacer
taaatcatcaacatctttgatttttcttaaagt	Protospacer
 ******  ****************.* *  .*

13. spacer 31.3|7770071|34|NC_010628|PILER-CR,CRISPRCasFinder,CRT matches to AP013518 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S31-C15) position: , mismatch: 8, identity: 0.765

tctctatctacaaaatcaatagctccagtgacaa	CRISPR spacer
ttgctttctacaaaatcaatagcttcattaaaat	Protospacer
*. ** ******************.** *.* *

14. spacer 31.5|7770219|34|NC_010628|PILER-CR,CRISPRCasFinder,CRT matches to AP013518 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G21, isolate: uvMED-CGR-U-MedDCM-OCT-S31-C15) position: , mismatch: 8, identity: 0.765

tctctatctacaaaatcaatagctccagtgacaa	CRISPR spacer
ttgctttctacaaaatcaatagcttcattaaaat	Protospacer
*. ** ******************.** *.* *

15. spacer 33.1|7964679|30|NC_010628|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 8, identity: 0.733

agtaggcgaaaaaccagccgccgcaacaga	CRISPR spacer
gcatggcgatgaaccagccgccgcaaccgg	Protospacer
.   ***** .**************** *.

16. spacer 5.5|1229200|34|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to NC_015708 (Pseudoalteromonas sp. SANK 73390 plasmid pTML1 carrying thiomarinol biosynthesis cluster) position: , mismatch: 9, identity: 0.735

----ctagggctttttagtgactttctaaatctaaaag	CRISPR spacer
cccaatagaa----ttagttactttctaaatttaaaag	Protospacer
     ***..    ***** ***********.******

17. spacer 15.4|3338435|33|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KP738729 (Aeromonas sp. Ne-1 plasmid pNe-1, complete sequence) position: , mismatch: 9, identity: 0.727

gaaatcagaaacatctttgatttttttgaccat	CRISPR spacer
attttcataaacatttttgatttttttggaaat	Protospacer
.   *** ******.*************.  **

18. spacer 27.7|6983129|33|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 9, identity: 0.727

cggtaagcttattctcatcaaaagtgacatcct	CRISPR spacer
tcagattattattctcatcaaatatgacatcct	Protospacer
. . *   ************** .*********

19. spacer 5.1|1228917|35|NC_010628|CRISPRCasFinder,CRT matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 10, identity: 0.714

aatcttttttgctgattatatcaaatcattagatg	CRISPR spacer
agaaataactgatgattatataaaatcattagata	Protospacer
*.   *  .** ********* ************.

20. spacer 5.1|1228917|35|NC_010628|CRISPRCasFinder,CRT matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 10, identity: 0.714

aatcttttttgctgattatatcaaatcattagatg	CRISPR spacer
agaaataactgatgattatataaaatcattagata	Protospacer
*.   *  .** ********* ************.

21. spacer 5.1|1228917|35|NC_010628|CRISPRCasFinder,CRT matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 10, identity: 0.714

aatcttttttgctgattatatcaaatcattagatg	CRISPR spacer
agaaataactgatgattatataaaatcattagata	Protospacer
*.   *  .** ********* ************.

22. spacer 5.1|1228917|35|NC_010628|CRISPRCasFinder,CRT matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 10, identity: 0.714

aatcttttttgctgattatatcaaatcattagatg	CRISPR spacer
agaaataactgatgattatataaaatcattagata	Protospacer
*.   *  .** ********* ************.

23. spacer 5.1|1228917|35|NC_010628|CRISPRCasFinder,CRT matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 10, identity: 0.714

aatcttttttgctgattatatcaaatcattagatg	CRISPR spacer
agaaataactgatgattatataaaatcattagata	Protospacer
*.   *  .** ********* ************.

24. spacer 5.1|1228917|35|NC_010628|CRISPRCasFinder,CRT matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 10, identity: 0.714

aatcttttttgctgattatatcaaatcattagatg	CRISPR spacer
agaaataactgatgattatataaaatcattagata	Protospacer
*.   *  .** ********* ************.

25. spacer 5.1|1228917|35|NC_010628|CRISPRCasFinder,CRT matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 10, identity: 0.714

aatcttttttgctgattatatcaaatcattagatg	CRISPR spacer
agaaataactgatgattatataaaatcattagata	Protospacer
*.   *  .** ********* ************.

26. spacer 5.1|1228917|35|NC_010628|CRISPRCasFinder,CRT matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 10, identity: 0.714

aatcttttttgctgattatatcaaatcattagatg	CRISPR spacer
agaaataactgatgattatataaaatcattagata	Protospacer
*.   *  .** ********* ************.

27. spacer 5.1|1228917|35|NC_010628|CRISPRCasFinder,CRT matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 10, identity: 0.714

aatcttttttgctgattatatcaaatcattagatg	CRISPR spacer
agaaataactgatgattatataaaatcattagata	Protospacer
*.   *  .** ********* ************.

28. spacer 7.19|1602896|37|NC_010628|CRT,PILER-CR,CRISPRCasFinder matches to MG945509 (UNVERIFIED: Microviridae sp. isolate 1761-1801, complete genome) position: , mismatch: 10, identity: 0.73

aaggtcaacatcagcaagagtcagcataccgctaaaa	CRISPR spacer
ggcctcaacatccgcaagagtaagcataccgaagaga	Protospacer
..  ******** ******** *********  .*.*

29. spacer 15.4|3338435|33|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to AP013454 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S33-C36) position: , mismatch: 10, identity: 0.697

gaaatcagaaacatctttgatttttttgaccat	CRISPR spacer
taaatcggaagcatctttgatttttccactttt	Protospacer
 *****.***.**************... .. *

30. spacer 15.6|3338582|35|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to MH572446 (Microviridae sp. isolate SD_MC_32, complete genome) position: , mismatch: 10, identity: 0.714

----gttgttacttaatccgtcaaatagtcccattagat	CRISPR spacer
tgagggcg----ctaatgcggcaaatagtcccattagaa	Protospacer
    * .*    .**** ** *****************

31. spacer 27.3|6982844|34|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to KY290950 (Aeromonas phage 59.1, complete genome) position: , mismatch: 10, identity: 0.706

accattaatcgccatccgccagatagaatccaat	CRISPR spacer
aaaacagggtgccatcggccagatagaagccaat	Protospacer
*  *. .. .****** *********** *****

32. spacer 31.10|7770572|35|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to LT598654 (Phage NCTB genome assembly, complete genome: monopartite) position: , mismatch: 10, identity: 0.714

tggctttttcaattgcagaggcaacatcttcttct	CRISPR spacer
catctttttcaaattcagaggcaacatcattgatt	Protospacer
.. ********* * ************* *.  .*

33. spacer 31.15|7770931|36|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to MN038175 (Panteoa phage Phynn, complete genome) position: , mismatch: 10, identity: 0.722

gtgatttttgctattgttagtgcatctattattttt	CRISPR spacer
attatttttgctattgttattgcagctatcgctgcg	Protospacer
.* **************** **** ****...* .

34. spacer 7.2|1601648|34|NC_010628|CRT,PILER-CR,CRISPRCasFinder matches to JX409894 (Streptococcus phage LYGO9, complete genome) position: , mismatch: 11, identity: 0.676

tcccaagaaaaatacggctatcaatatcaagata	CRISPR spacer
tagttgtaaaaataccgctatcaataacaagcac	Protospacer
*  . . ******** ********** ****

35. spacer 7.2|1601648|34|NC_010628|CRT,PILER-CR,CRISPRCasFinder matches to MK448956 (Streptococcus phage Javan48, complete genome) position: , mismatch: 11, identity: 0.676

tcccaagaaaaatacggctatcaatatcaagata	CRISPR spacer
tagttgtaaaaataccgctatcaataacaagcac	Protospacer
*  . . ******** ********** ****

36. spacer 7.2|1601648|34|NC_010628|CRT,PILER-CR,CRISPRCasFinder matches to MK448749 (Streptococcus phage Javan39, complete genome) position: , mismatch: 11, identity: 0.676

tcccaagaaaaatacggctatcaatatcaagata	CRISPR spacer
tagttgtaaaaataccgctatcaataacaagcac	Protospacer
*  . . ******** ********** ****

37. spacer 7.2|1601648|34|NC_010628|CRT,PILER-CR,CRISPRCasFinder matches to JX409895 (Streptococcus phage JX01, complete genome) position: , mismatch: 11, identity: 0.676

tcccaagaaaaatacggctatcaatatcaagata	CRISPR spacer
tagttgtaaaaataccgctatcaataacaagcac	Protospacer
*  . . ******** ********** ****

38. spacer 7.2|1601648|34|NC_010628|CRT,PILER-CR,CRISPRCasFinder matches to MH853356 (Streptococcus phage LF2, partial genome) position: , mismatch: 11, identity: 0.676

tcccaagaaaaatacggctatcaatatcaagata	CRISPR spacer
tagttgtaaaaataccgctatcaataacaagcac	Protospacer
*  . . ******** ********** ****

39. spacer 7.58|1605727|34|NC_010628|CRT,PILER-CR,CRISPRCasFinder matches to MG592546 (Vibrio phage 1.179.O._10N.286.45.F12, partial genome) position: , mismatch: 11, identity: 0.676

cacaggcttctgctattttcatgattctgattgc	CRISPR spacer
ttttgacttctgctattttcattattatgaccaa	Protospacer
. . *.**************** *** ***...

40. spacer 7.58|1605727|34|NC_010628|CRT,PILER-CR,CRISPRCasFinder matches to MG592623 (Vibrio phage 1.257.O._10N.286.46.A4, partial genome) position: , mismatch: 11, identity: 0.676

cacaggcttctgctattttcatgattctgattgc	CRISPR spacer
ttttgacttctgctattttcattattatgaccaa	Protospacer
. . *.**************** *** ***...

41. spacer 15.32|3340470|35|NC_010628|CRISPRCasFinder,CRT,PILER-CR matches to CP033549 (Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-4, complete sequence) position: , mismatch: 11, identity: 0.686

tcttggtttgaataattccaatgcttccagtacct	CRISPR spacer
agctcagttgaaaaatgccaatgcttccagtattg	Protospacer
  .* . ***** *** ***************..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 20419

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406833.1\|166_1546_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
WP_012406834.1\|1765_2947_+	family 10 glycosylhydrolase	NA	NA	NA	NA
WP_012406835.1\|3194_4685_-	glutamine synthetase	NA	NA	NA	NA
WP_012406837.1\|6567_7167_+	hypothetical protein	NA	NA	NA	NA
WP_012406838.1\|7214_13253_-	hypothetical protein	NA	NA	NA	NA
WP_012406839.1\|13249_14554_-	AAA family ATPase	NA	NA	NA	NA
WP_012406840.1\|15002_16226_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-45	36.9
WP_012406841.1\|16268_16487_-	hypothetical protein	NA	NA	NA	NA
WP_041565810.1\|16726_18187_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA
WP_012406843.1\|18583_20419_-	serine/threonine protein kinase	A0A2K9L111	Tupanvirus	2.6e-12	27.2

DBSCAN-SWA_2

27678 : 36835

Feldmannia_species_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406849.1\|27678_30159_+	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	3.5e-185	38.9
WP_012406850.1\|30365_30908_+	GNAT family N-acetyltransferase	G9BWD5	Planktothrix_phage	2.0e-13	31.5
WP_012406851.1\|30966_32535_+	phospholipid carrier-dependent glycosyltransferase	NA	NA	NA	NA
WP_012406852.1\|32842_35149_+	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	2.4e-39	24.5
WP_012406853.1\|35093_35540_+	response regulator	NA	NA	NA	NA
WP_012406854.1\|35671_36835_+	hybrid sensor histidine kinase/response regulator	B5LWN0	Feldmannia_species_virus	1.5e-13	29.2

DBSCAN-SWA_3

39861 : 46422

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406857.1\|39861_42477_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	G3M9Z5	Bacillus_virus	9.8e-106	32.6
WP_041565087.1\|42457_44047_+	apolipoprotein N-acyltransferase	NA	NA	NA	NA
WP_012406859.1\|44125_44461_+	DUF4870 domain-containing protein	NA	NA	NA	NA
WP_041565088.1\|44846_45224_+	hypothetical protein	NA	NA	NA	NA
WP_012406860.1\|45417_46422_-	transaldolase	E3SQJ7	Cyanophage	3.9e-10	37.9

DBSCAN-SWA_4

53307 : 54471

Bacteriophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406865.1\|53307_54471_-	DNA polymerase III subunit beta	A0A1L2BX73	Bacteriophage	1.0e-54	36.2

DBSCAN-SWA_5

61891 : 74238

Paenibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406872.1\|61891_66640_-	PfaB family protein	D0R7J2	Paenibacillus_phage	1.8e-17	25.6
WP_012406873.1\|66945_68673_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_041565090.1\|68808_74238_-	acyltransferase domain-containing protein	D0R7J2	Paenibacillus_phage	2.5e-18	26.4

DBSCAN-SWA_6

80059 : 81043

uncultured_marine_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406878.1\|80059_81043_+	glycosyltransferase	A0A0F7L2F7	uncultured_marine_virus	2.8e-05	31.8

DBSCAN-SWA_7

90991 : 97442

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406889.1\|90991_92569_+	M23 family metallopeptidase	G9BW84	Planktothrix_phage	3.7e-23	43.8
WP_012406890.1\|92669_93350_-	riboflavin synthase	A0A1V0SE20	Indivirus	1.6e-20	35.1
WP_012406891.1\|93690_94188_+	bifunctional nuclease family protein	NA	NA	NA	NA
WP_012406892.1\|94337_95468_+	aldo/keto reductase	NA	NA	NA	NA
WP_041565093.1\|95633_97442_+	ABC transporter ATP-binding protein	F2Y165	Organic_Lake_phycodnavirus	1.0e-16	28.9

DBSCAN-SWA_8

112953 : 114030

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406902.1\|112953_114030_+	glycosyltransferase	A0A1V0SAH6	Catovirus	1.7e-11	33.0

DBSCAN-SWA_9

122222 : 123866

uncultured_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406911.1\|122222_123866_+	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	2.5e-14	31.6

DBSCAN-SWA_10

131068 : 131749

Microcystis_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_193372267.1\|131068_131749_+	glycoside hydrolase family protein	A0A7K9	Microcystis_virus	1.8e-06	29.7

DBSCAN-SWA_11

135577 : 137182

Klosneuvirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406922.1\|135577_137182_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	2.9e-92	37.0

DBSCAN-SWA_12

141454 : 142936

Mycoplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406927.1\|141454_142936_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	4.8e-49	39.6

DBSCAN-SWA_13

149781 : 152199

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406934.1\|149781_152199_+	endonuclease MutS2	A0A1V0SC35	Catovirus	6.3e-14	26.8

DBSCAN-SWA_14

159229 : 159616

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406942.1\|159229_159616_-	DUF1257 domain-containing protein	A0A1B1IU37	uncultured_Mediterranean_phage	3.8e-14	37.6

DBSCAN-SWA_15

169864 : 173627

Chrysochromulina_ericina_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406951.1\|169864_171823_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.4e-151	48.1
WP_012406952.1\|172499_173627_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	4.1e-24	30.9

DBSCAN-SWA_16

195564 : 196587

Moraxella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406972.1\|195564_196587_-	DUF262 domain-containing protein	A0A0R6PJX3	Moraxella_phage	3.9e-10	27.2

DBSCAN-SWA_17

200939 : 201569

Cafeteria_roenbergensis_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406979.1\|200939_201569_+	DnaJ domain-containing protein	E3T4P7	Cafeteria_roenbergensis_virus	2.3e-05	46.6

DBSCAN-SWA_18

226295 : 228332

Ralstonia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012406999.1\|226295_228332_+	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	7.6e-122	38.5

DBSCAN-SWA_19

250933 : 256520

Wolbachia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407015.1\|250933_251506_+	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	6.6e-15	30.4
WP_012407016.1\|251671_253642_+	SDR family NAD(P)-dependent oxidoreductase	A0A2P0VP75	Tetraselmis_virus	8.7e-06	25.9
WP_012407017.1\|253731_254196_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_012407020.1\|255641_256520_+	glucose 1-dehydrogenase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	1.0e-70	51.8

DBSCAN-SWA_20

264009 : 266238

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407025.1\|264009_266238_-	photosystem I core protein PsaB	A0A0K0KW31	Prochlorococcus_phage	0.0e+00	69.0

DBSCAN-SWA_21

275071 : 282347

Streptococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565114.1\|275071_277510_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	6.4e-67	38.3
WP_012407036.1\|277978_280186_+	sugar nucleotide-binding protein	A0A1D7XFA3	Escherichia_phage	8.2e-21	30.6
WP_012407037.1\|280295_281282_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.0e-55	38.8
WP_012407038.1\|281390_282347_+	UV DNA damage repair endonuclease UvsE	A0A1C3NF62	Phage_NCTB	3.7e-10	24.3

DBSCAN-SWA_22

286132 : 286861

Kaumoebavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407041.1\|286132_286861_+	DUF72 domain-containing protein	A0A1V0CNL1	Kaumoebavirus	1.6e-26	32.1

DBSCAN-SWA_23

308761 : 315085

Feldmannia_irregularis_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407057.1\|308761_309826_-	chemotaxis response regulator protein-glutamate methylesterase	Q6XM27	Feldmannia_irregularis_virus	6.8e-05	38.9
WP_012407058.1\|310078_312322_-	hybrid sensor histidine kinase/response regulator	Q56AR1	Bacillus_thuringiensis_phage	2.1e-11	22.9
WP_012407059.1\|312402_313146_-	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_012407060.1\|313378_315085_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-13	31.9

DBSCAN-SWA_24

345862 : 347002

uncultured_Mediterranean_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407087.1\|345862_347002_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.9e-77	42.7

DBSCAN-SWA_25

353969 : 368495

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407094.1\|353969_354548_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.8e-31	45.2
WP_012407095.1\|354737_354926_-	photosystem II reaction center protein PsbZ	NA	NA	NA	NA
WP_012407096.1\|355076_357773_+	CBS domain-containing protein	I6XLV3	Aeromonas_phage	9.4e-19	35.3
WP_012407097.1\|357785_358508_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_012407098.1\|359032_360667_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	5.9e-32	24.1
WP_012407099.1\|360807_361134_+	hypothetical protein	NA	NA	NA	NA
WP_041565840.1\|361286_362972_+	AarF/ABC1/UbiB kinase family protein	H8ZJ56	Ostreococcus_tauri_virus	1.6e-69	31.8
WP_012407101.1\|362989_363715_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA
WP_041565841.1\|364387_364585_+	NblA/ycf18 family protein	NA	NA	NA	NA
WP_012407103.1\|365059_366613_-	serine/threonine protein kinase	A0A285PX80	Cedratvirus	7.8e-18	27.8
WP_012407104.1\|367481_368495_-	glycosyltransferase	A0A1V0SAH6	Catovirus	4.2e-12	37.0

DBSCAN-SWA_26

378131 : 380237

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407112.1\|378131_380237_-	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	3.3e-35	27.8

DBSCAN-SWA_27

383980 : 388854

Feldmannia_irregularis_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407115.1\|383980_384655_+	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	8.7e-06	33.9
WP_012407116.1\|385128_388854_+	VCBS repeat-containing protein	A0A248SKT0	Klebsiella_phage	1.9e-06	41.9

DBSCAN-SWA_28

392272 : 395989

Cyanophage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565122.1\|392272_393445_+	RpoD/SigA family RNA polymerase sigma factor	M4SMP8	Cyanophage	7.9e-39	37.0
WP_012407119.1\|393731_394226_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012407120.1\|394744_395989_-	PDZ domain-containing protein	A0A0R6PIZ1	Moraxella_phage	1.5e-19	27.0

DBSCAN-SWA_29

399030 : 400020

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407124.1\|399030_400020_+	GDP-mannose 4,6-dehydratase	M1HKY0	Acanthocystis_turfacea_Chlorella_virus	2.8e-77	46.3

DBSCAN-SWA_30

412911 : 414015

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407137.1\|412911_414015_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.2e-60	43.3

DBSCAN-SWA_31

427967 : 434535

Saudi_moumouvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407151.1\|427967_433451_+	AAA family ATPase	A0A1S5V1Y4	Saudi_moumouvirus	1.6e-09	26.7
WP_012407152.1\|433575_434535_-	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	8.4e-79	53.8

DBSCAN-SWA_32

441758 : 443609

Pelagibacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407161.1\|441758_443609_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	8.1e-30	35.8

DBSCAN-SWA_33

478669 : 478969

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407188.1\|478669_478969_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A0E3I315	Synechococcus_phage	5.9e-23	57.8

DBSCAN-SWA_34

490976 : 491813

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407203.1\|490976_491813_+	hypothetical protein	A0A0F7L9X0	Escherichia_phage	1.9e-23	31.1

DBSCAN-SWA_35

506288 : 510954

Acanthamoeba_polyphaga_moumouvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_193372271.1\|506288_507815_+	slipin family protein	L7RCW8	Acanthamoeba_polyphaga_moumouvirus	7.4e-13	24.4
WP_148220399.1\|508799_509102_+	hypothetical protein	NA	NA	NA	NA
WP_193372253.1\|509598_509754_+	hypothetical protein	NA	NA	NA	NA
WP_012407219.1\|510150_510954_+	DUF4935 domain-containing protein	A4PE40	Ralstonia_virus	6.8e-74	50.0

DBSCAN-SWA_36

514731 : 516944

Lake_Baikal_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407222.1\|514731_515631_-	Fe-S cluster assembly protein NifU	A0A2H4N7M4	Lake_Baikal_phage	2.1e-23	47.2
WP_012407223.1\|515735_516944_-	cysteine desulfurase NifS	H7BUW1	unidentified_phage	2.8e-39	40.8

DBSCAN-SWA_37

549596 : 551442

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407255.1\|549596_550280_-	response regulator	W8CYM9	Bacillus_phage	8.5e-17	38.4
WP_012407256.1\|550974_551442_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	8.9e-34	49.0

DBSCAN-SWA_38

563057 : 622079

Lysinibacillus_phage(20.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407265.1\|563057_563729_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_012407266.1\|563849_564569_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_012407267.1\|564662_565451_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012407268.1\|565603_566224_+	hypothetical protein	NA	NA	NA	NA
WP_012407269.1\|566237_566840_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_012407270.1\|566981_567308_-	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_012407271.1\|567635_568196_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_041565141.1\|568206_570204_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_012407273.1\|570457_570916_+	hypothetical protein	NA	NA	NA	NA
WP_012407274.1\|571266_571449_+	CsbD family protein	NA	NA	NA	NA
WP_012407275.1\|571756_572197_+	hypothetical protein	NA	NA	NA	NA
WP_012407276.1\|572302_572824_+	hypothetical protein	NA	NA	NA	NA
WP_012407277.1\|573078_573717_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_012407278.1\|573761_574199_-	hypothetical protein	NA	NA	NA	NA
WP_012407279.1\|574247_575474_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.5e-24	27.1
WP_012407280.1\|575644_576064_-	PIN domain-containing protein	NA	NA	NA	NA
WP_012407281.1\|576060_576351_-	hypothetical protein	NA	NA	NA	NA
WP_167315538.1\|576398_576560_-	hypothetical protein	NA	NA	NA	NA
WP_041565142.1\|576927_577173_-	hypothetical protein	NA	NA	NA	NA
WP_012406904.1\|577145_578039_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_041565857.1\|581923_583051_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA
WP_041565143.1\|583228_584311_-	ATP-dependent 6-phosphofructokinase	NA	NA	NA	NA
WP_041565144.1\|584591_585566_+	GTPase Era	NA	NA	NA	NA
WP_012407286.1\|585806_586484_+	response regulator transcription factor	NA	NA	NA	NA
WP_012407287.1\|587393_587963_-	DUF3611 family protein	NA	NA	NA	NA
WP_012407288.1\|588255_588729_+	TspO/MBR family protein	NA	NA	NA	NA
WP_012407289.1\|588819_589293_+	TspO/MBR family protein	NA	NA	NA	NA
WP_012407290.1\|589298_590006_-	D-alanyl-D-alanine dipeptidase	NA	NA	NA	NA
WP_012407291.1\|590836_592351_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_012407292.1\|592538_593558_+	daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-23	32.9
WP_041565859.1\|593760_594648_+	ABC transporter permease	NA	NA	NA	NA
WP_012407294.1\|594688_595084_+	hypothetical protein	NA	NA	NA	NA
WP_012407295.1\|595282_595720_-	peroxiredoxin	NA	NA	NA	NA
WP_012407296.1\|595913_596318_+	hypothetical protein	NA	NA	NA	NA
WP_012407297.1\|596551_598036_+	cobyric acid synthase CobQ	NA	NA	NA	NA
WP_012407298.1\|598257_598494_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_012407299.1\|598623_599067_-	SRPBCC family protein	NA	NA	NA	NA
WP_012407300.1\|599179_600619_-	9,9'-di-cis-zeta-carotene desaturase	NA	NA	NA	NA
WP_012407301.1\|600893_601070_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_012407302.1\|602711_604355_-	hypothetical protein	NA	NA	NA	NA
WP_012407303.1\|604680_605037_+	iron-sulfur cluster assembly accessory protein	A0A0P0CQC4	Ostreococcus_lucimarinus_virus	2.8e-11	33.3
WP_041565861.1\|605190_605613_+	hypothetical protein	NA	NA	NA	NA
WP_012407305.1\|605728_605977_+	hypothetical protein	NA	NA	NA	NA
WP_012407306.1\|606087_607008_-	TIGR01777 family protein	NA	NA	NA	NA
WP_012407307.1\|607308_607656_+	hypothetical protein	NA	NA	NA	NA
WP_012407308.1\|607922_609263_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_052304551.1\|609210_609684_-	FHA domain-containing protein	NA	NA	NA	NA
WP_012407309.1\|610009_612436_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.5e-76	29.8
WP_041565863.1\|612570_612750_-	hypothetical protein	NA	NA	NA	NA
WP_148220232.1\|612839_613139_-	DUF2752 domain-containing protein	NA	NA	NA	NA
WP_012407311.1\|615789_616065_-	NINE protein	NA	NA	NA	NA
WP_012407312.1\|616670_618245_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_012407313.1\|618378_618909_-	hypothetical protein	NA	NA	NA	NA
WP_012407314.1\|619083_619875_+	FHA domain-containing protein	NA	NA	NA	NA
WP_012407315.1\|620121_620475_+	hypothetical protein	NA	NA	NA	NA
WP_012407316.1\|620567_622079_+	AAA family ATPase	U5XJW0	Phormidium_phage	2.9e-102	40.0

DBSCAN-SWA_39

647539 : 653340

Paramecium_bursaria_Chlorella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407336.1\|647539_649792_-	cadmium-translocating P-type ATPase	M1HXH2	Paramecium_bursaria_Chlorella_virus	1.6e-08	26.6
WP_063721256.1\|649934_650750_-	hypothetical protein	NA	NA	NA	NA
WP_012407338.1\|650811_651900_-	hypothetical protein	NA	NA	NA	NA
WP_012407339.1\|652335_653340_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.3e-25	33.0

DBSCAN-SWA_40

656571 : 657426

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565151.1\|656571_657426_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	2.1e-12	37.1

DBSCAN-SWA_41

665394 : 670243

Bacillus_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407349.1\|665394_666417_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-18	34.5
WP_167315560.1\|667401_667569_+	hypothetical protein	NA	NA	NA	NA
WP_012407350.1\|667600_670243_+\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	1.8e-59	37.2

DBSCAN-SWA_42

676861 : 681987

Micromonas_pusilla_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407355.1\|676861_678766_+	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	1.9e-146	50.6
WP_012407356.1\|680106_681987_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-48	27.8

DBSCAN-SWA_43

685420 : 689217

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407361.1\|685420_686479_-	NAD(P)-dependent alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.6e-78	46.1
WP_012407362.1\|686706_687450_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012407363.1\|687547_688267_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_012407364.1\|688443_689217_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.2e-20	33.5

DBSCAN-SWA_44

727417 : 730239

Acanthamoeba_polyphaga_mimivirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407390.1\|727417_728587_+	SDR family NAD(P)-dependent oxidoreductase	A0A0G2Y182	Acanthamoeba_polyphaga_mimivirus	2.6e-34	30.4
WP_012407391.1\|728895_730239_+	adenylosuccinate synthase	A0A2P1EKE7	Megavirus	4.3e-65	35.7

DBSCAN-SWA_45

743486 : 746123

Microcystis_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407406.1\|743486_744749_+	formylglycine-generating enzyme family protein	A0A7H6	Microcystis_virus	2.1e-74	52.6
WP_012407407.1\|744788_746123_-	DUF4041 domain-containing protein	X5JAC1	Clostridium_phage	3.2e-36	40.6

DBSCAN-SWA_46

749831 : 753893

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407410.1\|749831_750860_+	AAA family ATPase	A0A218KBV7	Bacillus_phage	6.1e-19	27.7
WP_041565156.1\|750871_751513_+	nicotinamide mononucleotide transporter	I6W764	Vibriophage	7.4e-15	30.3
WP_012407412.1\|751726_752566_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_167315564.1\|752792_753893_+	serine hydrolase	A0A2H4JAN9	uncultured_Caudovirales_phage	8.3e-22	26.4

DBSCAN-SWA_47

762074 : 764833

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407421.1\|762074_763547_-	phosphoglucosamine mutase	A0A1X9I671	Streptococcus_phage	2.2e-14	23.4
WP_012407422.1\|764116_764833_+	heme oxygenase (biliverdin-producing)	M4QDD1	Prochlorococcus_phage	4.1e-54	53.7

DBSCAN-SWA_48

780976 : 781705

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407438.1\|780976_781705_-	C40 family peptidase	A0A1C9EHF6	Mycobacterium_phage	2.5e-06	38.2

DBSCAN-SWA_49

794711 : 796082

Orpheovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565888.1\|794711_796082_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.6e-75	49.2

DBSCAN-SWA_50

799691 : 800258

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407453.1\|799691_800258_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	A0A0E3FQD0	Synechococcus_phage	8.0e-05	50.0

DBSCAN-SWA_51

818920 : 824073

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407466.1\|818920_820087_-	UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase	A0A2K9L0G1	Tupanvirus	1.0e-38	35.1
WP_012407467.1\|820083_821073_-	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	A0A2P1ELS8	Moumouvirus	1.8e-44	37.2
WP_041565162.1\|821132_821558_-	hypothetical protein	NA	NA	NA	NA
WP_012407469.1\|822471_822690_+	DUF4327 family protein	NA	NA	NA	NA
WP_012407470.1\|822798_824073_-	protein kinase	A0A0B5J6A8	Pandoravirus	1.3e-13	28.1

DBSCAN-SWA_52

833360 : 834218

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407478.1\|833360_834218_-	DNA adenine methylase	A0A1S5PRR3	Streptococcus_phage	2.9e-54	41.6

DBSCAN-SWA_53

837419 : 842331

Trichoplusia_ni_ascovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407483.1\|837419_838166_-	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	5.2e-20	31.9
WP_012407484.1\|838775_839681_+	cation transporter	NA	NA	NA	NA
WP_012407485.1\|839743_840148_-	response regulator	NA	NA	NA	NA
WP_012407487.1\|840708_842331_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.0e-20	31.9

DBSCAN-SWA_54

850347 : 860503

Paramecium_bursaria_Chlorella_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407496.1\|850347_852489_+	potassium-transporting ATPase subunit KdpB	M1HN09	Paramecium_bursaria_Chlorella_virus	4.7e-29	26.3
WP_012407497.1\|852495_852765_+	potassium-transporting ATPase subunit F	NA	NA	NA	NA
WP_012407498.1\|852764_853403_+	K(+)-transporting ATPase subunit C	NA	NA	NA	NA
WP_012407499.1\|853957_855733_+	iron uptake porin	Q5GQG9	Synechococcus_phage	1.8e-10	24.6
WP_041565894.1\|856112_856382_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_012407501.1\|856394_856865_+	PAM68 family protein	NA	NA	NA	NA
WP_012407502.1\|857146_858205_+	3-deoxy-7-phosphoheptulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.1e-12	26.6
WP_041565165.1\|858641_858893_-	hypothetical protein	NA	NA	NA	NA
WP_012407504.1\|859240_860503_-	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	3.8e-23	27.9

DBSCAN-SWA_55

871302 : 872958

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407517.1\|871302_872958_-	iron uptake porin	Q5GQG9	Synechococcus_phage	8.9e-12	30.1

DBSCAN-SWA_56

878015 : 888471

Synechococcus_phage(25.0%)

integrase

attL 879021:879065|attR 887109:887153

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407521.1\|878015_878609_+	chromophore lyase CpcT/CpeT	C7BVI4	Synechococcus_phage	7.1e-20	32.8
879021:879065	attL	NA	NA	NA	NA
WP_041565169.1\|879269_879491_+	hypothetical protein	NA	NA	NA	NA
WP_012407522.1\|879536_880211_+	hypothetical protein	NA	NA	NA	NA
WP_041565170.1\|880407_880635_+	hypothetical protein	NA	NA	NA	NA
WP_012407523.1\|880634_880820_+	hypothetical protein	NA	NA	NA	NA
WP_012407524.1\|880825_881095_+	hypothetical protein	NA	NA	NA	NA
WP_167315568.1\|881241_881391_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_012407525.1\|881516_883097_+	virulence-associated E family protein	U5XGR4	Phormidium_phage	2.9e-28	33.2
WP_148220241.1\|883576_883984_-	hypothetical protein	NA	NA	NA	NA
WP_041565172.1\|884205_884436_+	hypothetical protein	NA	NA	NA	NA
WP_012407527.1\|884435_884948_+	hypothetical protein	NA	NA	NA	NA
WP_041565173.1\|885217_885790_+	hypothetical protein	NA	NA	NA	NA
WP_012407528.1\|885786_886989_-\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	2.1e-10	27.4
WP_012407529.1\|887409_888471_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	6.5e-24	26.1
887109:887153	attR	NA	NA	NA	NA

DBSCAN-SWA_57

931077 : 931575

Wolbachia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407554.1\|931077_931575_+	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	3.5e-12	33.3

DBSCAN-SWA_58

938720 : 939545

Orpheovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565177.1\|938720_939545_-	alpha/beta hydrolase	A0A2I2L4J5	Orpheovirus	1.3e-32	35.4

DBSCAN-SWA_59

946442 : 1019750

Bacillus_phage(42.86%)

transposase,protease,integrase

attL 1008426:1008474|attR 1013200:1013248

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083782459.1\|946442_947723_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_041565182.1\|949307_949559_-	hypothetical protein	NA	NA	NA	NA
WP_012407567.1\|949666_949948_-	hypothetical protein	NA	NA	NA	NA
WP_167315572.1\|950025_950172_-	hypothetical protein	NA	NA	NA	NA
WP_012407568.1\|950386_951487_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012407569.1\|951558_952671_-\|integrase	site-specific integrase	A0A1B0V6A4	Roseobacter_phage	2.1e-12	28.4
WP_012407570.1\|953106_953340_-	hypothetical protein	NA	NA	NA	NA
WP_012407571.1\|953716_954094_+	hypothetical protein	NA	NA	NA	NA
WP_148220243.1\|954192_954468_-	hypothetical protein	NA	NA	NA	NA
WP_012407573.1\|954492_955170_-	hypothetical protein	A0A218KCB0	Bacillus_phage	1.0e-06	63.4
WP_012407574.1\|955671_956331_+	hypothetical protein	NA	NA	NA	NA
WP_012407575.1\|956470_957322_+	hypothetical protein	NA	NA	NA	NA
WP_012407576.1\|957343_958348_+	hypothetical protein	NA	NA	NA	NA
WP_012407577.1\|958426_959368_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	8.3e-39	35.3
WP_012407578.1\|959762_960302_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_012407579.1\|960566_962483_+	sulfite reductase, ferredoxin dependent	NA	NA	NA	NA
WP_012407580.1\|962594_963239_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_012407581.1\|963252_964002_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_012407582.1\|964070_965135_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012407583.1\|965706_966546_+	urease accessory protein UreD	NA	NA	NA	NA
WP_012407584.1\|966585_966888_+	urease subunit gamma	NA	NA	NA	NA
WP_012407585.1\|966909_967215_+	urease subunit beta	NA	NA	NA	NA
WP_012407586.1\|967278_968994_+	urease subunit alpha	NA	NA	NA	NA
WP_012407587.1\|969372_969603_+	hypothetical protein	NA	NA	NA	NA
WP_012407588.1\|969610_969838_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_086000585.1\|969866_970151_-	DUF4351 domain-containing protein	NA	NA	NA	NA
WP_012407589.1\|970257_971892_-	chaperonin GroEL	A0A240F779	uncultured_virus	9.3e-155	54.6
WP_012407590.1\|971986_972298_-	co-chaperone GroES	A0A221S386	uncultured_virus	2.2e-17	48.9
WP_052304555.1\|972641_973118_+	ferredoxin	NA	NA	NA	NA
WP_012407592.1\|973446_974124_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.1e-19	42.0
WP_012407593.1\|974201_974510_-	NIL domain-containing protein	NA	NA	NA	NA
WP_012407594.1\|974809_975025_+	hypothetical protein	NA	NA	NA	NA
WP_041565187.1\|975015_975390_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_012407596.1\|975499_975994_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012407597.1\|976177_978142_-	AAA-like domain-containing protein	NA	NA	NA	NA
WP_012407598.1\|978141_979713_-	AAA-like domain-containing protein	NA	NA	NA	NA
WP_012407599.1\|980083_981223_+	hybrid sensor histidine kinase/response regulator	W8CYM9	Bacillus_phage	3.8e-14	38.8
WP_012407600.1\|981417_982800_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_012407601.1\|982889_983495_-	sulfite oxidase-like oxidoreductase	NA	NA	NA	NA
WP_012407602.1\|983770_983944_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_012407603.1\|984111_984594_-	hypothetical protein	NA	NA	NA	NA
WP_012407604.1\|984793_986695_+	caspase family protein	NA	NA	NA	NA
WP_012407605.1\|986805_987183_-	Mo-dependent nitrogenase C-terminal domain-containing protein	NA	NA	NA	NA
WP_012407606.1\|987939_989712_-	ribonuclease J	NA	NA	NA	NA
WP_012407607.1\|989996_990881_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_012407608.1\|991000_992038_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012407609.1\|992922_994365_+	trigger factor	NA	NA	NA	NA
WP_012407610.1\|994675_995374_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	4.4e-53	53.8
WP_012407611.1\|995383_996724_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.0e-135	55.6
WP_012407612.1\|996830_997751_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_083782320.1\|997764_998292_-	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_012407613.1\|998308_999292_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012407614.1\|999559_1000300_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_012407615.1\|1000421_1001324_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_012407616.1\|1001608_1002535_-	GUN4 domain-containing protein	NA	NA	NA	NA
WP_012407617.1\|1003608_1004484_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012407618.1\|1004582_1006064_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012407619.1\|1006246_1008226_-	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	7.3e-45	43.5
1008426:1008474	attL	NA	NA	NA	NA
WP_012407620.1\|1008541_1011586_-\|transposase	Tn3-like element ISNpu13 family transposase	Q1MVP5	Enterobacteria_phage	2.3e-45	22.9
WP_012407621.1\|1011707_1012622_-\|integrase	tyrosine-type recombinase/integrase	A0A1U9WS15	Gordonia_phage	3.1e-06	24.7
WP_012407622.1\|1012699_1013167_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_012407623.1\|1013350_1016773_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	2.0e-34	38.1
1013200:1013248	attR	NA	NA	NA	NA
WP_041565189.1\|1017050_1019750_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	2.8e-47	29.5

DBSCAN-SWA_60

1025952 : 1032785

Brazilian_cedratvirus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407632.1\|1025952_1027674_-	protein kinase	A0A2R8FD81	Brazilian_cedratvirus	3.2e-12	24.6
WP_012407633.1\|1028332_1029724_-\|tRNA	asparagine--tRNA ligase	A0A2P1EJK5	Megavirus	3.2e-87	38.8
WP_041565191.1\|1029726_1030089_-	hypothetical protein	NA	NA	NA	NA
WP_041565907.1\|1030133_1030409_+	hypothetical protein	NA	NA	NA	NA
WP_012407635.1\|1030537_1030987_-	anti-sigma regulatory factor	NA	NA	NA	NA
WP_012407636.1\|1031378_1032785_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	E4ZFI6	Streptococcus_phage	8.2e-75	34.5

DBSCAN-SWA_61

1036488 : 1042684

Microbacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407639.1\|1036488_1038855_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	8.5e-157	42.4
WP_012407640.1\|1039028_1040528_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.6e-50	30.7
WP_012407641.1\|1040712_1040994_-	hypothetical protein	NA	NA	NA	NA
WP_012407642.1\|1041045_1042092_-	ABC transporter permease	NA	NA	NA	NA
WP_012407643.1\|1042165_1042684_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	4.4e-34	46.8

DBSCAN-SWA_62

1050766 : 1066191

Bacillus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407650.1\|1050766_1051948_+	phosphate ABC transporter substrate-binding protein PstS	M4SNR3	Cyanophage	2.2e-68	50.0
WP_012407651.1\|1052095_1053046_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_012407652.1\|1053065_1053947_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_012407653.1\|1054004_1054811_+	phosphate ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.8e-11	28.6
WP_012407654.1\|1055222_1056383_-	hypothetical protein	NA	NA	NA	NA
WP_012407655.1\|1056451_1059985_-	response regulator	W8CYF6	Bacillus_phage	1.8e-30	35.9
WP_167315574.1\|1059981_1060128_-	hypothetical protein	NA	NA	NA	NA
WP_148220246.1\|1061007_1061640_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012407657.1\|1062237_1062792_+	hypothetical protein	NA	NA	NA	NA
WP_193372274.1\|1062800_1063946_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	3.1e-11	24.8
WP_012407659.1\|1064066_1064702_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_012407660.1\|1064814_1066191_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	4.5e-41	27.7

DBSCAN-SWA_63

1072359 : 1075128

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407665.1\|1072359_1073589_+	two-component system response regulator	W8CYM9	Bacillus_phage	5.6e-19	32.1
WP_012407666.1\|1073748_1075128_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L277	Tupanvirus	1.6e-30	33.3

DBSCAN-SWA_64

1083186 : 1087848

Mycobacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407674.1\|1083186_1084788_+	TROVE domain-containing protein	A0A076GDS2	Mycobacterium_phage	4.2e-75	32.5
WP_148220247.1\|1084808_1085024_+	hypothetical protein	NA	NA	NA	NA
WP_012407675.1\|1085035_1087036_-	ATP-binding protein	NA	NA	NA	NA
WP_012407676.1\|1087188_1087848_+	hypothetical protein	A0A2H4N7W4	Lake_Baikal_phage	2.4e-08	28.8

DBSCAN-SWA_65

1094881 : 1099815

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083782322.1\|1094881_1096852_-	CHASE2 domain-containing protein	A0A1V0SGY7	Hokovirus	2.5e-05	35.2
WP_041565194.1\|1097593_1098115_+	NYN domain-containing protein	NA	NA	NA	NA
WP_012407682.1\|1098210_1099815_+	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	1.9e-06	31.1

DBSCAN-SWA_66

1104312 : 1105758

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407686.1\|1104312_1105758_+	ATP-dependent DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	1.2e-49	29.6

DBSCAN-SWA_67

1110477 : 1112568

Tupanvirus(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407694.1\|1110477_1111470_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.2e-32	38.3
WP_041565197.1\|1111770_1112568_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.5e-44	39.6

DBSCAN-SWA_68

1129783 : 1137482

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407710.1\|1129783_1130878_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	2.3e-16	27.4
WP_012407711.1\|1130964_1131174_-	hypothetical protein	NA	NA	NA	NA
WP_012407712.1\|1131333_1131516_-	CsbD family protein	NA	NA	NA	NA
WP_012407713.1\|1132515_1132743_+	hypothetical protein	NA	NA	NA	NA
WP_012407714.1\|1132761_1134384_+	hypothetical protein	A0A0N9QAZ1	Chrysochromulina_ericina_virus	6.0e-37	31.1
WP_012407715.1\|1134980_1135301_+	RNA-binding protein	NA	NA	NA	NA
WP_012407716.1\|1135409_1135598_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_012407717.1\|1135721_1137482_+	serine/threonine protein kinase	A0A2R8FF19	Brazilian_cedratvirus	4.7e-11	28.2

DBSCAN-SWA_69

1147877 : 1151837

Indivirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407726.1\|1147877_1149248_-	serine/threonine protein kinase	A0A1V0SD90	Indivirus	4.8e-11	24.2
WP_012407727.1\|1150046_1151837_+	translational GTPase TypA	A0A2K5B2A5	Erysipelothrix_phage	2.1e-22	42.6

DBSCAN-SWA_70

1162965 : 1164346

Agrobacterium_phage(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407740.1\|1162965_1163577_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	7.8e-46	52.5
WP_012407741.1\|1163683_1164346_-\|protease	ATP-dependent Clp protease proteolytic subunit	G3M9Z8	Bacillus_virus	2.0e-23	37.7

DBSCAN-SWA_71

1178469 : 1181868

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407749.1\|1178469_1179720_+	RNA polymerase sigma factor SigC	G8CLC7	Synechococcus_phage	5.7e-35	39.1
WP_012407750.1\|1180141_1180597_+	transcriptional repressor	NA	NA	NA	NA
WP_012407751.1\|1180728_1181868_-	peptidoglycan-binding protein	B3VM63	Mycobacterium_phage	1.9e-05	41.2

DBSCAN-SWA_72

1186051 : 1188103

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407753.1\|1186051_1188103_+	GAF domain-containing sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.9e-33	40.2

DBSCAN-SWA_73

1193455 : 1200411

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407760.1\|1193455_1195777_-	DNA helicase PcrA	A7KV33	Bacillus_phage	6.9e-119	38.1
WP_012407761.1\|1195934_1196186_+	hypothetical protein	NA	NA	NA	NA
WP_012407762.1\|1196588_1197557_+	sodium-dependent bicarbonate transport family permease	NA	NA	NA	NA
WP_012407763.1\|1197561_1197873_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_041565208.1\|1197901_1198603_+	carbonic anhydrase	NA	NA	NA	NA
WP_012407765.1\|1198686_1200411_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.9e-36	41.2

DBSCAN-SWA_74

1212966 : 1214073

Cyanophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407775.1\|1212966_1214073_+	photosystem II q(b) protein	A0A127KM98	Cyanophage	5.1e-181	83.2

DBSCAN-SWA_75

1219360 : 1220419

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407778.1\|1219360_1220419_-	3-deoxy-7-phosphoheptulonate synthase	A0A0U2D9U5	Escherichia_phage	9.5e-84	46.5

DBSCAN-SWA_76

1240307 : 1245200

Leptospira_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148220251.1\|1240307_1241729_+	efflux RND transporter periplasmic adaptor subunit	S5VL44	Leptospira_phage	5.3e-05	25.0
WP_012407793.1\|1241852_1245200_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	8.8e-67	21.4

DBSCAN-SWA_77

1249474 : 1261439

Streptococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407798.1\|1249474_1250971_+	DNA adenine methylase	M1Q227	Streptococcus_phage	3.3e-05	32.9
WP_012407799.1\|1250996_1251542_+	hypothetical protein	NA	NA	NA	NA
WP_012407800.1\|1251605_1252091_+	hypothetical protein	NA	NA	NA	NA
WP_012407801.1\|1252162_1253440_-	adenosylhomocysteinase	S4W1G4	Pandoravirus	1.0e-63	34.7
WP_086000618.1\|1253886_1255506_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_012407803.1\|1255903_1259221_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	6.1e-52	21.6
WP_012407804.1\|1259473_1259911_+	hypothetical protein	NA	NA	NA	NA
WP_012407805.1\|1260527_1261439_+	M23 family metallopeptidase	A0A075BS18	Microcystis_phage	1.3e-17	40.8

DBSCAN-SWA_78

1275898 : 1277740

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407815.1\|1275898_1277740_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-48	30.4

DBSCAN-SWA_79

1285835 : 1291109

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407821.1\|1285835_1286390_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.2e-22	35.3
WP_012407822.1\|1286593_1287445_-	hypothetical protein	NA	NA	NA	NA
WP_012407823.1\|1287494_1288502_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_012407824.1\|1288701_1289970_-	class I SAM-dependent methyltransferase	A0A1C9C5J0	Heterosigma_akashiwo_virus	2.7e-40	28.3
WP_012407825.1\|1290080_1291109_-	SDR family oxidoreductase	A0A2K9L5H6	Tupanvirus	4.5e-06	22.9

DBSCAN-SWA_80

1300744 : 1333058

Escherichia_phage(33.33%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407834.1\|1300744_1303195_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_012407835.1\|1303304_1303574_+	YciI family protein	NA	NA	NA	NA
WP_012407836.1\|1303702_1304497_+	Tab2/Atab2 family RNA-binding protein	NA	NA	NA	NA
WP_012407837.1\|1304687_1304918_+	hypothetical protein	NA	NA	NA	NA
WP_012407838.1\|1304904_1305264_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_012407839.1\|1305595_1306795_-	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_012407840.1\|1306868_1307897_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012407841.1\|1307974_1310173_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_012407842.1\|1310272_1310686_-	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	6.7e-09	44.3
WP_012407843.1\|1310973_1311300_+	YdhR family protein	NA	NA	NA	NA
WP_012407844.1\|1311524_1312022_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_012407845.1\|1312124_1313858_-	VgrG-related protein	NA	NA	NA	NA
WP_012407846.1\|1313938_1314496_-	hypothetical protein	NA	NA	NA	NA
WP_012407847.1\|1314534_1318137_-	hypothetical protein	A0A1L2BX61	Bacteriophage	8.2e-10	32.6
WP_012407848.1\|1318160_1318685_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012407849.1\|1318684_1318924_-	hypothetical protein	NA	NA	NA	NA
WP_083782461.1\|1319370_1321395_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_012407851.1\|1321541_1321877_-	XisI protein	NA	NA	NA	NA
WP_012407852.1\|1321864_1322281_-	XisH family protein	NA	NA	NA	NA
WP_167315578.1\|1322312_1322459_+	hypothetical protein	NA	NA	NA	NA
WP_083782462.1\|1322738_1323899_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_012407854.1\|1324113_1324758_-	FHA domain-containing protein	NA	NA	NA	NA
WP_012407855.1\|1324729_1326874_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012407856.1\|1326917_1327598_-	response regulator transcription factor	NA	NA	NA	NA
WP_012407857.1\|1327652_1328774_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012407858.1\|1329271_1330111_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_012407859.1\|1330141_1331803_+\|tail	phage tail sheath family protein	H6WFT7	Cyanophage	1.5e-19	33.7
WP_012407860.1\|1331940_1332396_+\|tail	phage tail protein	NA	NA	NA	NA
WP_012407861.1\|1332500_1333058_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_81

1336636 : 1338817

Brazilian_cedratvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407865.1\|1336636_1338817_+	CHASE2 domain-containing protein	A0A2R8FDX7	Brazilian_cedratvirus	2.8e-05	29.4

DBSCAN-SWA_82

1352045 : 1352774

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407878.1\|1352045_1352774_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.4e-23	31.6

DBSCAN-SWA_83

1368854 : 1369742

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407893.1\|1368854_1369742_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	3.6e-28	33.7

DBSCAN-SWA_84

1381011 : 1381380

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407904.1\|1381011_1381380_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A222YX16	Synechococcus_phage	1.8e-18	48.8

DBSCAN-SWA_85

1387336 : 1388065

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407914.1\|1387336_1388065_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-15	29.3

DBSCAN-SWA_86

1391911 : 1393993

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407918.1\|1391911_1393993_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	9.8e-08	25.5

DBSCAN-SWA_87

1408075 : 1410929

Feldmannia_species_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407929.1\|1408075_1410403_+	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	6.0e-30	22.6
WP_012407930.1\|1410455_1410929_+	response regulator	Q56AR1	Bacillus_thuringiensis_phage	1.4e-05	27.7

DBSCAN-SWA_88

1419017 : 1424222

Halovirus(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407939.1\|1419017_1420184_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.4e-56	37.1
WP_012407940.1\|1420417_1421458_+\|protease	retroviral-like aspartic protease family protein	NA	NA	NA	NA
WP_041565221.1\|1421387_1422476_-	anthranilate phosphoribosyltransferase	NA	NA	NA	NA
WP_041565940.1\|1422583_1423447_-	DNA adenine methylase	M4R1L7	Synechococcus_phage	3.6e-49	36.7
WP_012407943.1\|1423472_1424222_-	phage Gp37/Gp68 family protein	A0A2P1A0W3	Gordonia_phage	8.3e-66	45.6

DBSCAN-SWA_89

1446527 : 1454525

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407956.1\|1446527_1449257_+	response regulator	A0A1V0SGX0	Hokovirus	3.0e-49	34.1
WP_012407957.1\|1449253_1450681_+	response regulator	NA	NA	NA	NA
WP_012407958.1\|1450967_1454525_+	leucine-rich repeat domain-containing protein	A0A1V0SDR7	Indivirus	8.3e-07	30.4

DBSCAN-SWA_90

1478291 : 1482535

Cyanophage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407973.1\|1478291_1479428_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	C7F482	Cyanophage	9.2e-85	47.2
WP_012407974.1\|1479612_1480695_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_012407975.1\|1480852_1482535_+	chaperonin GroEL	A0A240F779	uncultured_virus	4.9e-159	55.0

DBSCAN-SWA_91

1488231 : 1490361

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407981.1\|1488231_1490361_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.5e-27	33.2

DBSCAN-SWA_92

1506175 : 1507870

Bodo_saltans_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407994.1\|1506175_1507870_+	serine/threonine protein kinase	A0A2H4UVE2	Bodo_saltans_virus	1.9e-09	23.3

DBSCAN-SWA_93

1516114 : 1517215

Cafeteria_roenbergensis_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408002.1\|1516114_1517215_-	3-deoxy-7-phosphoheptulonate synthase	E3T537	Cafeteria_roenbergensis_virus	7.0e-13	27.5

DBSCAN-SWA_94

1522618 : 1525831

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408007.1\|1522618_1523446_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.4e-50	45.2
WP_012408008.1\|1523626_1525831_-	anthranilate synthase	A0A0P0IKJ1	Acinetobacter_phage	2.5e-25	38.0

DBSCAN-SWA_95

1541128 : 1544157

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408019.1\|1541128_1543108_+	PAS domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	1.6e-20	27.8
WP_012408020.1\|1543305_1544157_+	response regulator	Q56AR1	Bacillus_thuringiensis_phage	1.5e-07	29.5

DBSCAN-SWA_96

1564128 : 1571247

Paenibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408031.1\|1564128_1571247_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	5.5e-18	27.3

DBSCAN-SWA_97

1576297 : 1577005

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_193372275.1\|1576297_1577005_+	DevA family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-78	67.2

DBSCAN-SWA_98

1582258 : 1582945

Ostreococcus_tauri_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408040.1\|1582258_1582945_+	HAD-IA family hydrolase	H8ZJ34	Ostreococcus_tauri_virus	4.4e-05	21.5

DBSCAN-SWA_99

1593476 : 1595705

Pelagibacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408050.1\|1593476_1595705_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	4.2e-33	25.9

DBSCAN-SWA_100

1618183 : 1620119

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408063.1\|1618183_1619374_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	3.4e-21	29.9
WP_012408064.1\|1619432_1620119_-	ribonuclease III	M1HK80	Acanthocystis_turfacea_Chlorella_virus	4.8e-20	36.3

DBSCAN-SWA_101

1624986 : 1625772

Cyanophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408070.1\|1624986_1625772_-	RNA polymerase sigma factor SigF	C7F449	Cyanophage	3.5e-14	40.0

DBSCAN-SWA_102

1635188 : 1638859

Mycobacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148220259.1\|1635188_1636310_+	peptide chain release factor 2	B5LLF2	Mycobacterium_phage	3.4e-07	46.8
WP_012408076.1\|1636700_1636856_+	DUF3285 domain-containing protein	NA	NA	NA	NA
WP_041565958.1\|1636900_1637434_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_012408078.1\|1637579_1638035_+	diacylglycerol kinase family protein	NA	NA	NA	NA
WP_012408079.1\|1638259_1638859_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	5.3e-55	51.0

DBSCAN-SWA_103

1647813 : 1713261

Ostreococcus_lucimarinus_virus(11.11%)

transposase,protease,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408087.1\|1647813_1649700_-\|protease	ATP-dependent zinc metalloprotease FtsH2	G9E4U6	Ostreococcus_lucimarinus_virus	5.6e-127	43.3
WP_012408088.1\|1650072_1650567_-	hypothetical protein	NA	NA	NA	NA
WP_041565245.1\|1650790_1652236_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_167315586.1\|1652554_1653019_-	hypothetical protein	NA	NA	NA	NA
WP_012408090.1\|1653291_1654314_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_041565962.1\|1655364_1656963_-	serine/threonine protein kinase	A0A1V0SDC3	Indivirus	1.7e-15	29.1
WP_012408092.1\|1657281_1658466_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_012408093.1\|1658597_1660058_-	TM0106 family RecB-like putative nuclease	NA	NA	NA	NA
WP_148220261.1\|1660417_1660597_+	hypothetical protein	NA	NA	NA	NA
WP_012408094.1\|1660737_1661931_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_012408095.1\|1662268_1663351_+	hypothetical protein	NA	NA	NA	NA
WP_012408096.1\|1664674_1666699_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	7.0e-27	30.4
WP_012408097.1\|1666733_1668113_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA
WP_041565963.1\|1668141_1669254_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_012408099.1\|1669355_1670489_+	glycosyltransferase	NA	NA	NA	NA
WP_012408100.1\|1670485_1671724_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_012408101.1\|1671720_1672866_+	glycosyltransferase	NA	NA	NA	NA
WP_012408102.1\|1672919_1674869_+	asparagine synthase (glutamine-hydrolyzing)	A0A0N9QYX6	Chrysochromulina_ericina_virus	3.0e-27	27.9
WP_012408103.1\|1674940_1676101_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_148220408.1\|1676406_1678032_+	DUF4091 domain-containing protein	NA	NA	NA	NA
WP_012408105.1\|1678173_1679184_+	NAD-dependent epimerase	NA	NA	NA	NA
WP_012408106.1\|1679232_1680450_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_012408107.1\|1680487_1681183_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012408108.1\|1681220_1682372_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2D2W2B8	Stenotrophomonas_phage	8.7e-14	29.0
WP_148220262.1\|1683073_1683667_+	sugar transferase	NA	NA	NA	NA
WP_012408110.1\|1683880_1685983_+	polysaccharide biosynthesis tyrosine autokinase	NA	NA	NA	NA
WP_012408111.1\|1686206_1686620_+	YjbQ family protein	NA	NA	NA	NA
WP_012408112.1\|1687046_1687796_+	hypothetical protein	NA	NA	NA	NA
WP_012408113.1\|1687828_1688638_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_012408114.1\|1688897_1689116_+	hypothetical protein	NA	NA	NA	NA
WP_012408115.1\|1689719_1690031_+	hypothetical protein	NA	NA	NA	NA
WP_012408116.1\|1690201_1691872_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_041565250.1\|1692625_1693885_+	glycosyltransferase	NA	NA	NA	NA
WP_012408118.1\|1694011_1694302_-	hypothetical protein	NA	NA	NA	NA
WP_012408119.1\|1694282_1694528_-	hypothetical protein	NA	NA	NA	NA
WP_012408120.1\|1694871_1695660_-	hypothetical protein	NA	NA	NA	NA
WP_012408121.1\|1696256_1697201_+	hypothetical protein	NA	NA	NA	NA
WP_012408122.1\|1697383_1698070_+	HAD family hydrolase	NA	NA	NA	NA
WP_012408123.1\|1698320_1699676_-	cytochrome P450	A0A2I2L481	Orpheovirus	3.4e-41	27.5
WP_012408124.1\|1700795_1701176_+	hypothetical protein	NA	NA	NA	NA
WP_012408125.1\|1701574_1703338_+	Rieske (2Fe-2S) protein	NA	NA	NA	NA
WP_193372276.1\|1703376_1705488_-	ATP-binding protein	A0A0R6PCP6	Moraxella_phage	6.0e-29	35.7
WP_083782464.1\|1705682_1707164_-	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_012408128.1\|1707746_1708331_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_012408129.1\|1708345_1708984_+	carboxypeptidase-like regulatory domain-containing protein	NA	NA	NA	NA
WP_012408130.1\|1709117_1710563_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	1.6e-41	30.4
WP_012408131.1\|1710663_1711764_+\|tail	phage tail sheath family protein	H6WFT7	Cyanophage	4.2e-18	32.5
WP_012408132.1\|1711791_1712232_+\|tail	phage tail protein	NA	NA	NA	NA
WP_012408133.1\|1712252_1712615_+	hypothetical protein	NA	NA	NA	NA
WP_012408134.1\|1712778_1713261_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_104

1716632 : 1717340

Bacillus_phage(100.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408138.1\|1716632_1717340_+\|tail	phage tail protein	A0A127AW40	Bacillus_phage	3.5e-05	26.0

DBSCAN-SWA_105

1739569 : 1746040

Cyanophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408152.1\|1739569_1746040_+	ExeM/NucH family extracellular endonuclease	M1UGR9	Cyanophage	5.8e-06	40.2

DBSCAN-SWA_106

1749770 : 1754793

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408156.1\|1749770_1750553_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.1e-19	30.7
WP_012408157.1\|1751196_1752240_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_041565252.1\|1752341_1752779_-	thermonuclease family protein	NA	NA	NA	NA
WP_012408159.1\|1752864_1753428_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	3.2e-14	32.4
WP_012408160.1\|1753524_1754793_-	GAF domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	4.4e-11	26.7

DBSCAN-SWA_107

1765121 : 1769102

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408167.1\|1765121_1766555_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	9.7e-31	30.4
WP_012408168.1\|1766572_1766800_-	hypothetical protein	NA	NA	NA	NA
WP_012408169.1\|1766819_1769102_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.0e-111	35.5

DBSCAN-SWA_108

1775898 : 1778885

Feldmannia_irregularis_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408171.1\|1775898_1776354_+	response regulator	Q6XM27	Feldmannia_irregularis_virus	2.6e-06	29.5
WP_012408172.1\|1776386_1777511_-	hybrid sensor histidine kinase/response regulator	W8CYM9	Bacillus_phage	4.1e-16	30.7
WP_012408173.1\|1777550_1778885_-	response regulator	A0A1V0SGX0	Hokovirus	1.6e-32	41.2

DBSCAN-SWA_109

1804454 : 1806458

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408188.1\|1804454_1806458_+	glycosyltransferase	A0A1V0S9E5	Catovirus	2.8e-07	26.1

DBSCAN-SWA_110

1812071 : 1816536

Bodo_saltans_virus(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408194.1\|1812071_1814951_+\|tRNA	isoleucine--tRNA ligase	A0A2H4UVG0	Bodo_saltans_virus	4.8e-69	27.4
WP_012408195.1\|1815381_1816536_+	histidine decarboxylase	A0A2P0VP20	Tetraselmis_virus	4.4e-66	40.5

DBSCAN-SWA_111

1821419 : 1822304

Lactococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408196.1\|1821419_1822304_-	ParA family protein	A0A1X9IGI7	Lactococcus_phage	4.8e-20	30.2

DBSCAN-SWA_112

1836226 : 1838431

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408209.1\|1836226_1838431_-	polysaccharide biosynthesis tyrosine autokinase	A0A1X9I5D6	Streptococcus_phage	3.0e-23	34.9

DBSCAN-SWA_113

1841697 : 1842717

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408212.1\|1841697_1842717_+	RNA polymerase sigma factor, RpoD/SigA family	F4YCU2	Synechococcus_phage	2.1e-43	36.1

DBSCAN-SWA_114

1847849 : 1849379

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083782466.1\|1847849_1849379_-	EAL domain-containing protein	G3MA91	Bacillus_virus	5.0e-25	38.0

DBSCAN-SWA_115

1864163 : 1864859

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408224.1\|1864163_1864859_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.7e-20	42.9

DBSCAN-SWA_116

1891772 : 1893104

Raccoon_poxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408246.1\|1891772_1893104_-	serpin family protein	A0A0G3G2T8	Raccoon_poxvirus	3.0e-34	31.1

DBSCAN-SWA_117

1903865 : 1907522

Spodoptera_littoralis_nuclear_polyhedrosis_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408253.1\|1903865_1905902_-	protein kinase	P89912	Spodoptera_littoralis_nuclear_polyhedrosis_virus	9.6e-08	26.0
WP_012408254.1\|1906469_1907522_-	serine/threonine protein kinase	Q8JS56	Phthorimaea_operculella_granulovirus	1.8e-10	28.1

DBSCAN-SWA_118

1910916 : 1918548

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408257.1\|1910916_1912704_-	GAF domain-containing protein	A0A1V0SGX0	Hokovirus	1.1e-31	37.8
WP_012408258.1\|1912876_1913113_-	hypothetical protein	NA	NA	NA	NA
WP_012408259.1\|1913722_1915534_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	3.0e-29	27.6
WP_012408260.1\|1915881_1918548_+	PAS domain S-box protein	A0A127AWB9	Bacillus_phage	1.3e-20	38.5

DBSCAN-SWA_119

1940185 : 1940950

Caulobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565993.1\|1940185_1940950_+	nucleotidyltransferase domain-containing protein	K4K696	Caulobacter_phage	6.1e-08	29.4

DBSCAN-SWA_120

1944343 : 1951236

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408280.1\|1944343_1947370_+	SMC family ATPase	G3MAB6	Bacillus_virus	2.1e-22	34.4
WP_041565262.1\|1947366_1948848_-	peptidoglycan-binding protein	A0A219VHE4	Ochrobactrum_phage	1.9e-05	41.5
WP_012408282.1\|1949057_1949606_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_012408283.1\|1949724_1951236_-	AAA family ATPase	U5XJW0	Phormidium_phage	4.8e-129	48.3

DBSCAN-SWA_121

1967010 : 1973705

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565995.1\|1967010_1968897_+	response regulator	A0A1V0SGX0	Hokovirus	5.2e-48	34.7
WP_012408304.1\|1968927_1970193_+	hybrid sensor histidine kinase/response regulator	NA	NA	NA	NA
WP_012408305.1\|1970314_1970749_+	hypothetical protein	NA	NA	NA	NA
WP_148220412.1\|1971217_1971769_+	exonuclease domain-containing protein	A0A1L3KJF4	Beihai_hepe-like_virus	2.9e-15	33.0
WP_012408307.1\|1971843_1972233_-	hypothetical protein	NA	NA	NA	NA
WP_012408308.1\|1972907_1973705_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	5.9e-54	50.0

DBSCAN-SWA_122

1985748 : 1991719

Pandoravirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408318.1\|1985748_1987812_+	protein kinase	A0A291ATM2	Pandoravirus	2.8e-07	31.6
WP_012408319.1\|1988255_1988555_+	WGxxGxxG-CTERM domain-containing protein	NA	NA	NA	NA
WP_041565265.1\|1988819_1989014_+	hypothetical protein	NA	NA	NA	NA
WP_012408320.1\|1989067_1991719_-	chloride channel protein	M1NSC5	Streptococcus_phage	7.6e-05	27.9

DBSCAN-SWA_123

1998244 : 1998868

Klebsiella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408326.1\|1998244_1998868_+	radical SAM protein	A0A0K1Y4M0	Klebsiella_phage	2.1e-14	32.7

DBSCAN-SWA_124

2002239 : 2002539

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408330.1\|2002239_2002539_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A222YX16	Synechococcus_phage	7.2e-29	68.1

DBSCAN-SWA_125

2027576 : 2028286

uncultured_virus(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086000592.1\|2027576_2028286_-\|transposase	IS1-like element ISNpu9 family transposase	A0A218MNG1	uncultured_virus	3.7e-07	30.5

DBSCAN-SWA_126

2038523 : 2039708

Pseudomonas_phage(100.0%)

integrase

attL 2037414:2037427|attR 2041716:2041729

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2037414:2037427	attL	NA	NA	NA	NA
WP_148220268.1\|2038523_2039708_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4B0G7	Pseudomonas_phage	2.4e-11	28.9
WP_148220268.1\|2038523_2039708_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4B0G7	Pseudomonas_phage	2.4e-11	28.9
2041716:2041729	attR	NA	NA	NA	NA

DBSCAN-SWA_127

2045553 : 2048289

Phormidium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408355.1\|2045553_2048289_+	DUF3854 domain-containing protein	U5XGR4	Phormidium_phage	9.7e-72	40.4

DBSCAN-SWA_128

2063359 : 2070883

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408374.1\|2063359_2068039_-	response regulator	A0A1V0SGX0	Hokovirus	2.5e-67	33.5
WP_012408375.1\|2068061_2069330_-	hypothetical protein	NA	NA	NA	NA
WP_012408376.1\|2069939_2070152_-	CopG family transcriptional regulator	NA	NA	NA	NA
WP_012408377.1\|2070202_2070883_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.3e-38	40.4

DBSCAN-SWA_129

2077427 : 2084134

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408383.1\|2077427_2079422_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	6.1e-116	40.5
WP_012408384.1\|2079876_2080260_+	hypothetical protein	NA	NA	NA	NA
WP_012408385.1\|2080505_2083181_-	RNA helicase	M1HV25	Acanthocystis_turfacea_Chlorella_virus	7.8e-74	38.7
WP_012408386.1\|2083315_2084134_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	3.2e-39	39.7

DBSCAN-SWA_130

2090143 : 2137989

Ostreococcus_lucimarinus_virus(40.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408392.1\|2090143_2091340_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_012408393.1\|2091613_2091892_-	photosystem I reaction center subunit PsaK	NA	NA	NA	NA
WP_012408394.1\|2092152_2092407_-	photosystem I reaction center subunit PsaK	NA	NA	NA	NA
WP_012408395.1\|2092518_2093151_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_012408396.1\|2093278_2093986_-	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	1.5e-48	53.9
WP_012408397.1\|2094071_2094797_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	9.0e-09	35.8
WP_012408398.1\|2095152_2096133_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_012408399.1\|2096253_2097273_-	long-chain acyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA
WP_012408400.1\|2097409_2098108_-	aldehyde oxygenase (deformylating)	NA	NA	NA	NA
WP_012408401.1\|2098292_2099120_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_012408402.1\|2099413_2099674_+	hypothetical protein	NA	NA	NA	NA
WP_012408403.1\|2099837_2102285_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_012408404.1\|2102803_2103076_+	hypothetical protein	NA	NA	NA	NA
WP_012408405.1\|2105905_2106937_-	hypothetical protein	NA	NA	NA	NA
WP_012408406.1\|2107098_2108085_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_012408407.1\|2108144_2108753_-	30S ribosomal protein S4	NA	NA	NA	NA
WP_193372257.1\|2109215_2109896_+	hypothetical protein	NA	NA	NA	NA
WP_012408409.1\|2110532_2111432_-	heterocyst differentiation master regulator HetR	NA	NA	NA	NA
WP_148220271.1\|2112529_2112715_-	hypothetical protein	NA	NA	NA	NA
WP_012408410.1\|2113743_2116083_-	EamA family transporter	NA	NA	NA	NA
WP_012408411.1\|2116777_2118046_-	inorganic phosphate transporter	A0A0P0CDM4	Ostreococcus_lucimarinus_virus	3.8e-47	31.4
WP_052304567.1\|2118119_2118422_-	hypothetical protein	NA	NA	NA	NA
WP_012408413.1\|2118518_2119577_-	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_083782346.1\|2119935_2120988_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_167315592.1\|2121008_2121179_-	hypothetical protein	NA	NA	NA	NA
WP_083782348.1\|2121273_2121732_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_086000593.1\|2122137_2123208_+\|transposase	ISKra4-like element ISNpu15 family transposase	NA	NA	NA	NA
WP_167315593.1\|2123477_2123642_+	hypothetical protein	NA	NA	NA	NA
WP_012408414.1\|2123676_2124183_+	N-acetyltransferase	NA	NA	NA	NA
WP_012408416.1\|2124567_2126031_-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	NA	NA	NA	NA
WP_012408417.1\|2126108_2126570_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_012408418.1\|2126945_2128859_-	biosynthetic-type acetolactate synthase large subunit	G9E4W7	Ostreococcus_lucimarinus_virus	6.4e-22	29.2
WP_012408419.1\|2128992_2130255_-	MFS transporter	NA	NA	NA	NA
WP_041566013.1\|2130528_2131128_-	hypothetical protein	NA	NA	NA	NA
WP_012408421.1\|2131504_2132623_+	ferrochelatase	NA	NA	NA	NA
WP_012408422.1\|2132667_2133213_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_012408423.1\|2133543_2135472_+\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	3.5e-124	42.0
WP_086000594.1\|2135508_2136586_-\|transposase	ISKra4-like element ISNpu15 family transposase	NA	NA	NA	NA
WP_083782349.1\|2136994_2137537_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_148220272.1\|2137533_2137989_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_131

2147062 : 2159968

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408431.1\|2147062_2148943_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.7e-33	35.6
WP_041566016.1\|2149165_2149636_+	GAF domain-containing protein	NA	NA	NA	NA
WP_083782467.1\|2151521_2151728_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_012408434.1\|2151904_2154076_+	type I DNA topoisomerase	E3T4K4	Cafeteria_roenbergensis_virus	1.8e-76	33.9
WP_041565284.1\|2154318_2154594_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012408436.1\|2154586_2154838_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_012408437.1\|2155062_2155470_-	response regulator	NA	NA	NA	NA
WP_148220415.1\|2155476_2155869_-	response regulator	NA	NA	NA	NA
WP_148220416.1\|2156025_2158071_-	GAF domain-containing protein	A0A1V0SGX0	Hokovirus	4.8e-31	36.6
WP_012408440.1\|2158180_2159968_-	response regulator	A0A1V0SGX0	Hokovirus	3.9e-29	31.1

DBSCAN-SWA_132

2163511 : 2229079

Acanthamoeba_polyphaga_mimivirus(20.0%)

protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566018.1\|2163511_2165035_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_012408445.1\|2165207_2165942_+	hypothetical protein	NA	NA	NA	NA
WP_012408446.1\|2166093_2172456_+	AAA family ATPase	A0A0G2Y6J2	Acanthamoeba_polyphaga_mimivirus	2.0e-11	30.2
WP_012408447.1\|2172475_2173336_+	hypothetical protein	A0A2I2L642	Orpheovirus	4.0e-16	29.5
WP_012408448.1\|2173499_2176625_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	7.4e-76	25.2
WP_012408449.1\|2176840_2179945_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.4e-74	23.6
WP_012408450.1\|2179941_2181519_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012408451.1\|2181760_2182726_-	RNA polymerase sigma factor, RpoD/SigA family	F4YCU2	Synechococcus_phage	7.9e-45	37.3
WP_012408452.1\|2183012_2183279_-	hypothetical protein	NA	NA	NA	NA
WP_012408453.1\|2183318_2184599_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	7.1e-25	29.9
WP_012408454.1\|2184723_2185095_-	hypothetical protein	NA	NA	NA	NA
WP_041566022.1\|2185445_2186666_+	sensor histidine kinase	NA	NA	NA	NA
WP_012408456.1\|2186667_2187315_+	response regulator transcription factor	NA	NA	NA	NA
WP_041565285.1\|2187923_2188166_+	hypothetical protein	NA	NA	NA	NA
WP_012408458.1\|2188720_2190076_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_012408459.1\|2190122_2190857_-	response regulator transcription factor	NA	NA	NA	NA
WP_012408460.1\|2191563_2192493_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_012408461.1\|2192489_2193032_+	DoxX family protein	NA	NA	NA	NA
WP_012408462.1\|2193262_2193670_-	peptidoglycan-binding protein	NA	NA	NA	NA
WP_148220274.1\|2194396_2195347_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_148220417.1\|2195512_2196496_-	VOC family protein	NA	NA	NA	NA
WP_012408465.1\|2196545_2197916_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012408466.1\|2197969_2198215_-	hypothetical protein	NA	NA	NA	NA
WP_012408467.1\|2198253_2198919_-	heme-copper oxidase subunit III	NA	NA	NA	NA
WP_012408468.1\|2199149_2200826_-	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA
WP_012408469.1\|2200815_2201736_-	cytochrome c oxidase subunit II	NA	NA	NA	NA
WP_012408470.1\|2201760_2202354_-	DUF2231 domain-containing protein	NA	NA	NA	NA
WP_012408471.1\|2202350_2202845_-	DUF2231 domain-containing protein	NA	NA	NA	NA
WP_012408472.1\|2203580_2204393_+	SDR family oxidoreductase	A0A0G2Y8L6	Acanthamoeba_polyphaga_mimivirus	3.2e-07	30.5
WP_012408473.1\|2204504_2206625_+	amylo-alpha-1,6-glucosidase	NA	NA	NA	NA
WP_012408474.1\|2206640_2207579_+	cation transporter	NA	NA	NA	NA
WP_012408475.1\|2207654_2210051_+	glucan 1,4-alpha-glucosidase	NA	NA	NA	NA
WP_012408476.1\|2210176_2210635_+	cupin domain-containing protein	NA	NA	NA	NA
WP_012408478.1\|2211989_2215286_-	response regulator	A0A1V0SGX0	Hokovirus	2.1e-44	31.6
WP_012408479.1\|2216171_2217287_+	response regulator	NA	NA	NA	NA
WP_012408480.1\|2217534_2218233_+	response regulator transcription factor	NA	NA	NA	NA
WP_012408481.1\|2218619_2219216_-	DUF3455 domain-containing protein	NA	NA	NA	NA
WP_012408482.1\|2219242_2222170_-\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	F2Y165	Organic_Lake_phycodnavirus	1.7e-10	27.1
WP_012408483.1\|2222371_2224615_-\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	9.8e-38	25.9
WP_012408484.1\|2224617_2226060_-\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA
WP_012408485.1\|2226185_2227283_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_012408486.1\|2227471_2227720_-	hypothetical protein	NA	NA	NA	NA
WP_012408487.1\|2227843_2228215_-	hypothetical protein	NA	NA	NA	NA
WP_012408488.1\|2228265_2228505_-	hypothetical protein	NA	NA	NA	NA
WP_012408489.1\|2228534_2228792_-\|bacteriocin	CTB family bacteriocin	NA	NA	NA	NA
WP_012408490.1\|2228839_2229079_-\|bacteriocin	CTB family bacteriocin	NA	NA	NA	NA

DBSCAN-SWA_133

2241572 : 2242043

Faustovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408500.1\|2241572_2242043_+	NADAR family protein	A0A0H3TLU0	Faustovirus	2.1e-35	51.4

DBSCAN-SWA_134

2263299 : 2265030

Organic_Lake_phycodnavirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565291.1\|2263299_2264307_-	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	2.4e-07	24.0
WP_012408517.1\|2264670_2265030_+	single-stranded DNA-binding protein	A0A291LA01	Bordetella_phage	1.8e-18	38.1

DBSCAN-SWA_135

2268383 : 2272491

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565293.1\|2268383_2270279_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	4.3e-26	40.8
WP_041565294.1\|2270595_2272491_+	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	1.7e-22	37.5

DBSCAN-SWA_136

2277969 : 2283998

Phaeocystis_globosa_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408526.1\|2277969_2279808_-	asparagine synthase	R4TIC1	Phaeocystis_globosa_virus	2.8e-14	22.5
WP_012408527.1\|2279813_2280437_-	DUF3859 domain-containing protein	NA	NA	NA	NA
WP_012408528.1\|2280632_2281664_+	hypothetical protein	NA	NA	NA	NA
WP_012408529.1\|2281733_2281982_-	hypothetical protein	NA	NA	NA	NA
WP_012408530.1\|2282243_2283998_-	7-cyano-7-deazaguanine synthase	F2Y2L7	Organic_Lake_phycodnavirus	4.7e-19	27.6

DBSCAN-SWA_137

2295847 : 2297977

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566028.1\|2295847_2297977_-	hybrid sensor histidine kinase/response regulator	W8CYF6	Bacillus_phage	2.8e-26	32.6

DBSCAN-SWA_138

2308177 : 2308732

Ochrobactrum_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565296.1\|2308177_2308732_-	peptidoglycan-binding protein	A0A219VHE4	Ochrobactrum_phage	3.2e-06	40.0

DBSCAN-SWA_139

2342847 : 2344353

Indivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408578.1\|2342847_2344353_+	YARHG domain-containing protein	A0A1V0SDQ4	Indivirus	5.3e-11	27.5

DBSCAN-SWA_140

2349229 : 2349550

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408585.1\|2349229_2349550_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A222YX16	Synechococcus_phage	7.4e-16	44.7

DBSCAN-SWA_141

2355343 : 2357257

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408590.1\|2355343_2357257_+	DUF3696 domain-containing protein	Q2P9X8	Enterobacteria_phage	4.6e-20	23.8

DBSCAN-SWA_142

2365013 : 2370018

Wolbachia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408598.1\|2365013_2365463_-	Hsp20 family protein	A0A1B2LRT2	Wolbachia_phage	3.2e-12	33.0
WP_012408599.1\|2365941_2366580_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012408600.1\|2366689_2368069_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012408601.1\|2368065_2370018_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.6e-22	29.8

DBSCAN-SWA_143

2377341 : 2378661

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408608.1\|2377341_2378661_+	acetyl ornithine aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	1.3e-29	27.9

DBSCAN-SWA_144

2385323 : 2386433

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408613.1\|2385323_2386433_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	3.4e-31	27.4

DBSCAN-SWA_145

2392844 : 2393603

Flavobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565304.1\|2392844_2393603_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	5.5e-25	41.5

DBSCAN-SWA_146

2421469 : 2422888

Erysipelothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408638.1\|2421469_2422888_-	mercuric reductase	A0A2K5B2C5	Erysipelothrix_phage	8.9e-77	36.8

DBSCAN-SWA_147

2428776 : 2429526

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408642.1\|2428776_2429526_-	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.7e-18	32.7

DBSCAN-SWA_148

2453812 : 2458575

Pandoravirus(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408657.1\|2453812_2454985_+	molybdopterin-synthase adenylyltransferase MoeB	A0A291ATS8	Pandoravirus	1.7e-09	34.5
WP_012408658.1\|2455328_2456528_+	MFS transporter	NA	NA	NA	NA
WP_012408659.1\|2456709_2458575_-\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQU5	Bathycoccus_sp._RCC1105_virus	8.5e-112	40.7

DBSCAN-SWA_149

2463702 : 2465148

Bodo_saltans_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408666.1\|2463702_2465148_+	deoxyribodipyrimidine photo-lyase, 8-HDF type	A0A2H4UV63	Bodo_saltans_virus	5.0e-67	32.4

DBSCAN-SWA_150

2475877 : 2479111

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_193372278.1\|2475877_2479111_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	5.6e-26	28.9

DBSCAN-SWA_151

2483433 : 2483724

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083782359.1\|2483433_2483724_+	hypothetical protein	A0A0U2RK18	Escherichia_phage	6.7e-16	50.6

DBSCAN-SWA_152

2492036 : 2493569

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408679.1\|2492036_2493569_-	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0SI18	Klosneuvirus	3.9e-70	34.1

DBSCAN-SWA_153

2498898 : 2500605

Yellowstone_lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408685.1\|2498898_2500605_-	thiamine pyrophosphate-binding protein	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	2.2e-29	27.5

DBSCAN-SWA_154

2509367 : 2512800

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565317.1\|2509367_2510906_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	3.0e-30	24.8
WP_012408693.1\|2511090_2512800_-	aromatic amino acid lyase	A0A1V0S940	Catovirus	1.2e-51	30.9

DBSCAN-SWA_155

2523323 : 2544381

Paenibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408703.1\|2523323_2526566_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	3.1e-32	30.8
WP_167315601.1\|2526663_2526816_-	hypothetical protein	NA	NA	NA	NA
WP_148220289.1\|2526873_2532492_-	SDR family oxidoreductase	D0R7J2	Paenibacillus_phage	2.0e-34	32.4
WP_012408705.1\|2532675_2538726_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	1.4e-30	31.4
WP_012408706.1\|2538828_2544381_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	3.8e-38	35.2

DBSCAN-SWA_156

2557961 : 2558228

Cyanophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408717.1\|2557961_2558228_-	nitrogenase	H6WFZ1	Cyanophage	4.4e-06	45.3

DBSCAN-SWA_157

2564037 : 2564790

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408721.1\|2564037_2564790_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.4e-17	32.3

DBSCAN-SWA_158

2580846 : 2581494

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408731.1\|2580846_2581494_+	nitroreductase	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	5.2e-32	33.6

DBSCAN-SWA_159

2608203 : 2611249

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408747.1\|2608203_2609526_+	Flp pilus assembly complex ATPase component TadA	G9BWD6	Planktothrix_phage	4.1e-76	64.5
WP_012408748.1\|2609527_2611249_+	fatty acyl-AMP ligase	A0A1V0SBX8	Catovirus	6.0e-11	20.7

DBSCAN-SWA_160

2625003 : 2637213

Bathycoccus_sp._RCC1105_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408762.1\|2625003_2626827_+	AAA family ATPase	E5ESM9	Bathycoccus_sp._RCC1105_virus	1.4e-42	41.4
WP_012408763.1\|2627073_2627763_+	GvpL/GvpF family gas vesicle protein	NA	NA	NA	NA
WP_012408764.1\|2628001_2628223_+	gas vesicle structural protein GvpA	NA	NA	NA	NA
WP_012408765.1\|2628298_2629006_+	hypothetical protein	NA	NA	NA	NA
WP_012408766.1\|2629454_2630786_+	response regulator	W8CYM9	Bacillus_phage	6.3e-08	27.4
WP_012408767.1\|2630932_2631295_+	response regulator	NA	NA	NA	NA
WP_012408768.1\|2631309_2631843_+	chemotaxis protein CheW	NA	NA	NA	NA
WP_148220427.1\|2631981_2637213_+	GAF domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.1e-18	33.7

DBSCAN-SWA_161

2667204 : 2713585

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408783.1\|2667204_2680374_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.7e-188	28.5
WP_148220293.1\|2680367_2684147_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	2.4e-52	39.2
WP_012408785.1\|2684198_2695850_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.5e-185	28.7
WP_012408786.1\|2695846_2703454_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	8.4e-190	27.5
WP_012408787.1\|2703493_2704291_+	hypothetical protein	NA	NA	NA	NA
WP_012408788.1\|2704339_2705446_+	zinc-binding dehydrogenase	A0A2L2DIY2	Acanthamoeba_polyphaga_mimivirus	5.0e-11	27.1
WP_012408789.1\|2705485_2706307_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_012408790.1\|2706409_2708401_+	ABC transporter ATP-binding protein/permease	G9BWD6	Planktothrix_phage	5.7e-05	24.1
WP_083782369.1\|2708889_2709024_+	microviridin/marinostatin family tricyclic proteinase inhibitor	NA	NA	NA	NA
WP_012408791.1\|2709312_2710305_+	MvdC family ATP-grasp ribosomal peptide maturase	S5VKI3	Leptospira_phage	6.9e-28	28.6
WP_041565327.1\|2710379_2711357_+	MvdD family ATP-grasp ribosomal peptide maturase	S5VKI3	Leptospira_phage	3.2e-33	30.5
WP_012408793.1\|2711488_2713585_+	patatin-like phospholipase family protein	A0A1B2LRS3	Wolbachia_phage	4.0e-49	36.3

DBSCAN-SWA_162

2727373 : 2730318

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408805.1\|2727373_2728945_+	Na+/H+ antiporter	A0A2H4J178	uncultured_Caudovirales_phage	1.0e-20	33.8
WP_052304693.1\|2729040_2730318_-	GAF domain-containing protein	W8CYF6	Bacillus_phage	2.0e-11	25.0

DBSCAN-SWA_163

2734803 : 2736123

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408812.1\|2734803_2736123_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A222YX16	Synechococcus_phage	3.8e-05	38.0

DBSCAN-SWA_164

2751625 : 2752399

Trichoplusia_ni_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408820.1\|2751625_2752399_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.8e-07	28.7

DBSCAN-SWA_165

2769861 : 2770839

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408836.1\|2769861_2770839_+	xanthine dehydrogenase family protein subunit M	A0A0P0IVM8	Acinetobacter_phage	2.0e-11	25.9

DBSCAN-SWA_166

2775232 : 2778674

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408839.1\|2775232_2776618_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	25.7
WP_148220295.1\|2776848_2777850_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012408841.1\|2778038_2778674_-	HAD family hydrolase	A0A1D8KNV9	Synechococcus_phage	6.4e-11	26.7

DBSCAN-SWA_167

2789393 : 2793582

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408849.1\|2789393_2791367_-	response regulator	A0A1V0SGX0	Hokovirus	1.2e-31	28.6
WP_012408850.1\|2791359_2793582_-	response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	4.1e-28	26.6

DBSCAN-SWA_168

2803130 : 2809787

Salmon_gill_poxvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408858.1\|2803130_2808536_-	AAA family ATPase	A0A0H4Y184	Salmon_gill_poxvirus	8.8e-08	31.2
WP_012408859.1\|2808704_2809787_-	photosystem II q(b) protein	A0A127KM98	Cyanophage	3.1e-191	88.8

DBSCAN-SWA_169

2839479 : 2841093

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083782383.1\|2839479_2841093_+	serine hydrolase	Q1MVP3	Enterobacteria_phage	5.5e-06	26.5

DBSCAN-SWA_170

2857914 : 2859159

Burkholderia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408895.1\|2857914_2859159_-	AAA family ATPase	C7BGE8	Burkholderia_phage	1.2e-08	22.8

DBSCAN-SWA_171

2863405 : 2864578

Thermus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408898.1\|2863405_2864578_-\|transposase	transposase	A0A068A1P5	Thermus_phage	8.2e-52	32.6

DBSCAN-SWA_172

2887789 : 2896397

Hokovirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408909.1\|2887789_2891518_+	type II toxin-antitoxin system ParD family antitoxin	A0A1V0SGX0	Hokovirus	1.8e-28	31.9
WP_041565345.1\|2892333_2894253_+	iron uptake porin	Q5GQG9	Synechococcus_phage	1.1e-10	27.7
WP_012408911.1\|2894868_2895186_-	thioredoxin	A0A1V0SD63	Indivirus	1.4e-11	42.9
WP_012408912.1\|2895650_2896397_+	3-oxoacyl-[acyl-carrier-protein] reductase	Q06VL0	Trichoplusia_ni_ascovirus	4.4e-19	33.1

DBSCAN-SWA_173

2901390 : 2902248

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408916.1\|2901390_2902248_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	3.6e-33	37.3

DBSCAN-SWA_174

2916499 : 2921676

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408925.1\|2916499_2920711_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	6.7e-64	29.7
WP_012408926.1\|2920707_2921676_+	PleD family two-component system response regulator	W8CYM9	Bacillus_phage	1.0e-15	37.5

DBSCAN-SWA_175

2928608 : 2933951

Acanthamoeba_polyphaga_mimivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408930.1\|2928608_2933951_+	AAA family ATPase	A0A0G2Y6J2	Acanthamoeba_polyphaga_mimivirus	2.4e-13	28.8

DBSCAN-SWA_176

2937338 : 2948201

Pandoravirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408934.1\|2937338_2939072_-	protein kinase	A0A291AU60	Pandoravirus	9.7e-09	29.9
WP_012408935.1\|2939810_2940827_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	4.4e-46	36.7
WP_012408936.1\|2941134_2944770_-	response regulator	A0A1V0SGX0	Hokovirus	5.1e-36	40.7
WP_012408937.1\|2945850_2946762_-	hypothetical protein	NA	NA	NA	NA
WP_012408938.1\|2946820_2947099_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_012408939.1\|2947340_2948201_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	4.3e-66	50.7

DBSCAN-SWA_177

2993858 : 2994521

Caldibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566113.1\|2993858_2994521_-	response regulator transcription factor	A0A290GJH9	Caldibacillus_phage	9.4e-05	43.5

DBSCAN-SWA_178

3012395 : 3016263

Streptomyces_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408990.1\|3012395_3014051_-	B12-binding domain-containing radical SAM protein	A0A0M4R1U9	Streptomyces_phage	3.9e-07	25.5
WP_012408991.1\|3014381_3015176_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012408992.1\|3015315_3016263_-	NAD-dependent epimerase/dehydratase family protein	A0A1V0SKV4	Klosneuvirus	3.7e-39	35.0

DBSCAN-SWA_179

3029297 : 3031316

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565351.1\|3029297_3031316_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	6.4e-28	31.8

DBSCAN-SWA_180

3043699 : 3044860

Bathycoccus_sp._RCC1105_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409007.1\|3043699_3044860_+	DegT/DnrJ/EryC1/StrS family aminotransferase	E5ES42	Bathycoccus_sp._RCC1105_virus	9.0e-19	30.2

DBSCAN-SWA_181

3055743 : 3081156

Tupanvirus(80.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409015.1\|3055743_3062289_+	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	9.5e-182	28.2
WP_012409016.1\|3062392_3065623_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.1e-93	26.5
WP_012409017.1\|3065707_3073444_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.4e-184	29.7
WP_012409018.1\|3073440_3077661_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	9.0e-117	28.7
WP_012409019.1\|3077744_3078923_+	2-benzylmalate synthase HphA	NA	NA	NA	NA
WP_012409020.1\|3079128_3081156_+	ABC transporter ATP-binding protein/permease	G9BWD6	Planktothrix_phage	3.4e-05	26.4

DBSCAN-SWA_182

3089458 : 3090313

Geobacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409028.1\|3089458_3090313_+	DNA adenine methylase	A0A0H3UZK1	Geobacillus_virus	1.5e-23	31.6

DBSCAN-SWA_183

3095970 : 3096852

Orpheovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409034.1\|3095970_3096852_-	hypothetical protein	A0A2I2L3U5	Orpheovirus	1.3e-81	56.6

DBSCAN-SWA_184

3107620 : 3109213

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409040.1\|3107620_3109213_-	ATPase	W8CYF6	Bacillus_phage	1.2e-26	32.3

DBSCAN-SWA_185

3115284 : 3115791

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148220431.1\|3115284_3115791_-	N-acetyltransferase	A0A1P8CWJ6	Bacillus_phage	2.0e-23	42.5

DBSCAN-SWA_186

3126665 : 3128721

Microbacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409055.1\|3126665_3127337_+	peptidoglycan-binding protein	A0A2L0HNW5	Microbacterium_phage	1.7e-09	36.4
WP_012409056.1\|3127593_3128721_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	8.2e-25	27.4

DBSCAN-SWA_187

3135718 : 3137014

Gordonia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409063.1\|3135718_3137014_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.4e-22	33.2

DBSCAN-SWA_188

3142337 : 3143342

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409068.1\|3142337_3143342_+	2-hydroxyacid dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.6e-67	41.7

DBSCAN-SWA_189

3148958 : 3151802

Synechococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409075.1\|3148958_3149558_+	dCTP deaminase	A0A191SB39	Nostoc_phage	1.9e-73	67.0
WP_012409077.1\|3150670_3151393_-	FAD-dependent thymidylate synthase	G8EY29	Synechococcus_phage	2.6e-80	59.5
WP_012409078.1\|3151586_3151802_+	high light inducible protein	A0A1D8KRZ5	Synechococcus_phage	8.0e-06	43.8

DBSCAN-SWA_190

3165313 : 3166270

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409089.1\|3165313_3166270_-	NAD(P)-dependent oxidoreductase	E3SJ76	Synechococcus_phage	7.2e-06	23.4

DBSCAN-SWA_191

3171407 : 3172376

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409094.1\|3171407_3172376_-	glycosyltransferase family 4 protein	A0A222YW34	Synechococcus_phage	5.9e-32	33.1

DBSCAN-SWA_192

3180406 : 3183719

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409101.1\|3180406_3180919_+	inorganic diphosphatase	A0A1B1ISK6	uncultured_Mediterranean_phage	8.3e-25	42.4
WP_012409102.1\|3181063_3181447_+	aspartate 1-decarboxylase	NA	NA	NA	NA
WP_012409103.1\|3181458_3182361_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012409104.1\|3182504_3183719_-	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	6.1e-18	26.5

DBSCAN-SWA_193

3195123 : 3197425

environmental_Halophage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409111.1\|3195123_3196191_-	site-specific DNA-methyltransferase	H9YPF1	environmental_Halophage	4.4e-44	34.1
WP_012409112.1\|3196216_3197425_-	cysteine desulfurase	A0A1X7QGF3	Faustovirus	6.7e-33	26.8

DBSCAN-SWA_194

3204405 : 3215786

Aphanizomenon_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409122.1\|3204405_3207948_+	DNA cytosine methyltransferase	A0A2H4PB75	Aphanizomenon_phage	2.6e-77	47.0
WP_041565363.1\|3208166_3208433_+	hypothetical protein	NA	NA	NA	NA
WP_041565364.1\|3208417_3208711_+	hypothetical protein	NA	NA	NA	NA
WP_012409124.1\|3208686_3211404_+	hypothetical protein	A0A1L2BWT8	Bacteriophage	5.3e-203	48.0
WP_167315618.1\|3211415_3211580_+	hypothetical protein	NA	NA	NA	NA
WP_012409125.1\|3211576_3213100_-	hypothetical protein	NA	NA	NA	NA
WP_012409126.1\|3213099_3213735_-	hypothetical protein	A0A2H4PAP3	Aphanizomenon_phage	1.0e-08	47.8
WP_012409127.1\|3213737_3215786_-	hypothetical protein	A0A1L2BWT5	Bacteriophage	3.5e-215	54.9

DBSCAN-SWA_195

3219461 : 3230402

Acaryochloris_phage(25.0%)

tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409135.1\|3219461_3225686_-\|tail	phage tail tape measure protein	A0A0X8XBZ3	Acaryochloris_phage	8.3e-18	25.1
WP_167315619.1\|3225867_3226044_-	hypothetical protein	NA	NA	NA	NA
WP_041565365.1\|3226226_3226421_+	hypothetical protein	NA	NA	NA	NA
WP_041566125.1\|3226615_3226927_+	hypothetical protein	NA	NA	NA	NA
WP_041565366.1\|3226928_3227111_-	hypothetical protein	NA	NA	NA	NA
WP_012409137.1\|3227322_3228954_-	hypothetical protein	A0A0U4JXN1	Arthrobacter_phage	2.5e-27	27.0
WP_012409138.1\|3228954_3229518_-	3'-5' exoribonuclease	A0A097EVM2	Mycobacterium_phage	9.4e-30	42.7
WP_041565367.1\|3229562_3229778_-	hypothetical protein	NA	NA	NA	NA
WP_012409139.1\|3229808_3230402_-\|terminase	terminase small subunit	Q6SED9	Lactobacillus_prophage	4.5e-06	30.1

DBSCAN-SWA_196

3244721 : 3248939

Bacillus_phage(100.0%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409158.1\|3244721_3248939_-\|capsid	minor capsid protein	A0A2P1JUH9	Bacillus_phage	4.4e-07	38.6

DBSCAN-SWA_197

3259405 : 3267199

Phormidium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565377.1\|3259405_3259783_-	hypothetical protein	S5VW65	Mycobacterium_phage	1.8e-08	35.2
WP_041565378.1\|3259783_3260008_-	hypothetical protein	NA	NA	NA	NA
WP_012409173.1\|3260438_3260957_-	hypothetical protein	NA	NA	NA	NA
WP_041565379.1\|3260925_3261318_-	FHA domain-containing protein	NA	NA	NA	NA
WP_012409174.1\|3261358_3261622_-	hypothetical protein	NA	NA	NA	NA
WP_012409175.1\|3261618_3262431_-	hypothetical protein	U5XGQ7	Phormidium_phage	4.9e-48	50.7
WP_041565381.1\|3262738_3262933_-	hypothetical protein	NA	NA	NA	NA
WP_012409176.1\|3262929_3263481_-	polynucleotide kinase 3 phosphatase, central region	NA	NA	NA	NA
WP_041565382.1\|3263577_3264177_-	protein rep	NA	NA	NA	NA
WP_012409178.1\|3264189_3264732_-	hypothetical protein	NA	NA	NA	NA
WP_012409179.1\|3264753_3265665_-	phage Gp37/Gp68 family protein	U5XHW5	Phormidium_phage	7.7e-58	41.5
WP_012409180.1\|3265889_3266582_-	hypothetical protein	NA	NA	NA	NA
WP_041565383.1\|3266653_3267199_-	HD domain-containing protein	A0A1B1IUF0	uncultured_Mediterranean_phage	3.6e-18	37.1

DBSCAN-SWA_198

3274892 : 3276731

Microcystis_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409189.1\|3274892_3276731_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	7.0e-74	57.3

DBSCAN-SWA_199

3284238 : 3289656

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409197.1\|3284238_3286167_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	8.4e-54	30.9
WP_012409198.1\|3286304_3286700_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_012409199.1\|3286749_3287394_-	HAD family hydrolase	M1HHJ7	Acanthocystis_turfacea_Chlorella_virus	2.7e-12	29.7
WP_167315621.1\|3287618_3287771_-	hypothetical protein	NA	NA	NA	NA
WP_012409200.1\|3287856_3288099_+	hypothetical protein	NA	NA	NA	NA
WP_012409201.1\|3288375_3288792_+	hypothetical protein	NA	NA	NA	NA
WP_012409202.1\|3288897_3289656_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	3.6e-24	34.7

DBSCAN-SWA_200

3295027 : 3295291

Bacteriophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409208.1\|3295027_3295291_-	hypothetical protein	A0A1L2BX43	Bacteriophage	9.1e-20	53.1

DBSCAN-SWA_201

3306421 : 3312025

Acanthamoeba_polyphaga_mimivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409214.1\|3306421_3312025_+	AAA family ATPase	A0A0G2YB36	Acanthamoeba_polyphaga_mimivirus	2.0e-10	33.8

DBSCAN-SWA_202

3317052 : 3317994

Clostridium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409217.1\|3317052_3317994_-	N-acetylmuramoyl-L-alanine amidase	I1TJX3	Clostridium_phage	1.5e-32	45.7

DBSCAN-SWA_203

3331544 : 3338141

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409220.1\|3331544_3338141_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	2.1e-40	28.1

DBSCAN-SWA_204

3377762 : 3379361

Bodo_saltans_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409255.1\|3377762_3379361_-	Hsp70 family protein	A0A2H4UU19	Bodo_saltans_virus	8.9e-17	25.1

DBSCAN-SWA_205

3391220 : 3400075

uncultured_Caudovirales_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409265.1\|3391220_3392894_-	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	5.8e-43	29.3
WP_041565398.1\|3393442_3395251_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-51	31.0
WP_012409267.1\|3395289_3395718_+	hypothetical protein	NA	NA	NA	NA
WP_012409268.1\|3395781_3396570_+	ATP-binding protein	NA	NA	NA	NA
WP_012409269.1\|3396544_3397060_-	hypothetical protein	NA	NA	NA	NA
WP_012409270.1\|3397199_3397793_+	acyltransferase	NA	NA	NA	NA
WP_041566140.1\|3397837_3399220_-	cytochrome P450	A0A2I2L481	Orpheovirus	1.6e-22	24.9
WP_012409272.1\|3399442_3400075_+	ParA family protein	B0ZSI1	Halomonas_phage	4.4e-12	30.3

DBSCAN-SWA_206

3411629 : 3414257

Bodo_saltans_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409283.1\|3411629_3412634_+	phosphoribulokinase	A0A2H4UUR3	Bodo_saltans_virus	4.7e-24	32.8
WP_012409284.1\|3412982_3414257_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	9.6e-123	56.4

DBSCAN-SWA_207

3444092 : 3448302

Cyanophage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086000624.1\|3444092_3444599_-	HNH endonuclease	H6WG01	Cyanophage	4.6e-20	37.8
WP_012409306.1\|3444733_3444985_-	hypothetical protein	NA	NA	NA	NA
WP_012409307.1\|3445056_3445392_+	hypothetical protein	NA	NA	NA	NA
WP_041566144.1\|3446280_3448302_+	GAF domain-containing protein	W8CYF6	Bacillus_phage	3.0e-17	26.6

DBSCAN-SWA_208

3457141 : 3457561

Cyanophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409315.1\|3457141_3457561_-	plastocyanin	M4SLM5	Cyanophage	5.7e-16	41.5

DBSCAN-SWA_209

3460746 : 3463194

Bathycoccus_sp._RCC1105_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409320.1\|3460746_3463194_+	ATP-binding protein	E5EQU5	Bathycoccus_sp._RCC1105_virus	2.5e-26	32.2

DBSCAN-SWA_210

3473051 : 3474002

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566147.1\|3473051_3474002_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.1e-26	33.2

DBSCAN-SWA_211

3477718 : 3478681

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409335.1\|3477718_3478681_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	3.6e-74	53.1

DBSCAN-SWA_212

3486135 : 3491136

Acinetobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409343.1\|3486135_3488775_+	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	1.7e-33	22.5
WP_012409344.1\|3489411_3491136_+	AarF/ABC1/UbiB kinase family protein	E5ES62	Bathycoccus_sp._RCC1105_virus	1.9e-49	29.3

DBSCAN-SWA_213

3497963 : 3500288

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409352.1\|3497963_3500288_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.0e-42	29.4

DBSCAN-SWA_214

3504781 : 3507412

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409357.1\|3504781_3507412_+	replicative DNA helicase	G9BWB0	Planktothrix_phage	5.7e-178	42.8

DBSCAN-SWA_215

3518436 : 3520035

Acanthamoeba_polyphaga_moumouvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409371.1\|3518436_3520035_-	insulinase family protein	L7RBE7	Acanthamoeba_polyphaga_moumouvirus	3.2e-14	25.1

DBSCAN-SWA_216

3530156 : 3542848

uncultured_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409381.1\|3530156_3531623_+	signal recognition particle protein	D6PHS7	uncultured_phage	9.4e-05	26.1
WP_012409382.1\|3531821_3532082_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_012409383.1\|3532044_3532479_+	KH domain-containing protein	NA	NA	NA	NA
WP_012409384.1\|3532981_3533935_+	PhoH family protein	A0A0P0YNP2	Yellowstone_lake_phycodnavirus	1.9e-46	47.3
WP_012409385.1\|3534026_3534431_+	hypothetical protein	NA	NA	NA	NA
WP_012409386.1\|3534470_3535586_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_012409387.1\|3535874_3536675_+	hypothetical protein	NA	NA	NA	NA
WP_012409388.1\|3536762_3538583_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.4e-42	27.7
WP_193372279.1\|3539105_3540014_-	hypothetical protein	NA	NA	NA	NA
WP_167315622.1\|3540379_3540601_+	hypothetical protein	NA	NA	NA	NA
WP_012409390.1\|3540736_3542848_+	M3 family metallopeptidase	A0A1V0SID3	Klosneuvirus	8.1e-50	26.1

DBSCAN-SWA_217

3551265 : 3554911

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409399.1\|3551265_3552030_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.0e-28	41.1
WP_012409400.1\|3552156_3553662_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_148220317.1\|3553903_3554911_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	4.2e-12	35.0

DBSCAN-SWA_218

3568743 : 3571998

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566152.1\|3568743_3571998_+	response regulator	W8CYF6	Bacillus_phage	6.9e-24	27.5

DBSCAN-SWA_219

3583317 : 3589340

Feldmannia_species_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409425.1\|3583317_3585207_-	response regulator	B5LWA6	Feldmannia_species_virus	3.3e-10	22.4
WP_012409426.1\|3585172_3585670_-	response regulator	NA	NA	NA	NA
WP_012409427.1\|3585989_3589340_-	PAS domain-containing protein	W8CYF6	Bacillus_phage	1.3e-12	27.2

DBSCAN-SWA_220

3593775 : 3605876

Bacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409431.1\|3593775_3598026_+	response regulator	W8CYF6	Bacillus_phage	1.0e-27	34.9
WP_012409433.1\|3598811_3599039_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_041565417.1\|3599087_3600326_-	exodeoxyribonuclease VII large subunit	M1NLU2	Moumouvirus	6.6e-28	29.9
WP_012409435.1\|3600387_3600666_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_041566156.1\|3600652_3600922_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_012409437.1\|3601437_3602517_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.2e-113	62.7
WP_012409438.1\|3602736_3603459_-	FHA domain-containing protein	NA	NA	NA	NA
WP_012409439.1\|3604271_3605876_-	pentapeptide repeat-containing protein	A0A1V0SBS0	Catovirus	3.8e-07	30.3

DBSCAN-SWA_221

3620216 : 3624578

Lake_Baikal_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409447.1\|3620216_3622793_+	adenylate/guanylate cyclase domain-containing protein	A0A2H4N7Z5	Lake_Baikal_phage	1.6e-39	39.0
WP_012409448.1\|3622871_3623147_-	hypothetical protein	NA	NA	NA	NA
WP_012409449.1\|3623840_3624578_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SCX8	Cyanophage	3.0e-44	42.4

DBSCAN-SWA_222

3631705 : 3632971

Nostoc_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409455.1\|3631705_3632971_+	DNA cytosine methyltransferase	A0A191SB20	Nostoc_phage	8.2e-58	37.0

DBSCAN-SWA_223

3636051 : 3636717

Megavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409459.1\|3636051_3636717_+	deoxyribonuclease V	K7YG68	Megavirus	3.9e-19	34.0

DBSCAN-SWA_224

3645052 : 3645364

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409465.1\|3645052_3645364_+	HigA family addiction module antidote protein	A0A2L1IV52	Escherichia_phage	8.6e-09	40.6

DBSCAN-SWA_225

3678363 : 3680844

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409486.1\|3678363_3679377_+	decarboxylating 6-phosphogluconate dehydrogenase	E3SKF4	Synechococcus_phage	7.2e-97	52.5
WP_012409487.1\|3679467_3680844_+	glucose-6-phosphate dehydrogenase	E3SJC5	Synechococcus_phage	1.4e-66	35.2

DBSCAN-SWA_226

3683849 : 3689622

uncultured_virus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052304698.1\|3683849_3684101_+	co-chaperone GroES	A0A221S386	uncultured_virus	7.6e-16	54.3
WP_012409490.1\|3684268_3685906_+	chaperonin GroEL	A0A240F779	uncultured_virus	4.7e-146	51.2
WP_012409491.1\|3686416_3686887_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_012409492.1\|3686932_3687475_+	DsbA family protein	NA	NA	NA	NA
WP_012409493.1\|3687732_3689622_+	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	4.9e-147	48.2

DBSCAN-SWA_227

3693183 : 3697192

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409498.1\|3693183_3694191_+	DnaJ domain-containing protein	A0A1V0SF83	Hokovirus	3.5e-19	28.5
WP_012409499.1\|3694187_3694505_+	hypothetical protein	NA	NA	NA	NA
WP_012409500.1\|3694549_3697192_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	1.2e-119	31.5

DBSCAN-SWA_228

3700433 : 3701162

Wolbachia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052304604.1\|3700433_3701162_-\|transposase	transposase	Q9JMN8	Wolbachia_phage	4.6e-53	49.8

DBSCAN-SWA_229

3722117 : 3781378

Tupanvirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409512.1\|3722117_3735494_-	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	2.2e-121	22.2
WP_012409513.1\|3735631_3740248_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	5.3e-54	40.8
WP_012409514.1\|3740240_3749969_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.1e-197	29.2
WP_012409515.1\|3750043_3763891_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.0e-116	22.4
WP_012409516.1\|3763951_3780010_-	hybrid non-ribosomal peptide synthetase/type I polyketide synthase	A0A2K9KZV5	Tupanvirus	4.7e-182	28.3
WP_012409517.1\|3780457_3781378_-	DUF3102 domain-containing protein	A0A0F7LAM6	uncultured_marine_virus	2.5e-08	33.0

DBSCAN-SWA_230

3785300 : 3786059

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409520.1\|3785300_3786059_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-32	37.1

DBSCAN-SWA_231

3795281 : 3802418

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409524.1\|3795281_3796541_+	DNA cytosine methyltransferase	A0A191SB20	Nostoc_phage	4.5e-48	35.0
WP_012409525.1\|3796466_3797114_-	GAF domain-containing protein	NA	NA	NA	NA
WP_012409526.1\|3797923_3799405_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	9.6e-167	61.9
WP_012409527.1\|3799621_3800485_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	2.4e-37	31.0
WP_012409529.1\|3801701_3802418_+	transferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	8.9e-09	36.8

DBSCAN-SWA_232

3807264 : 3810599

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409533.1\|3807264_3808692_-	sensor histidine kinase	A0A1V0SGX0	Hokovirus	4.7e-17	29.2
WP_012409534.1\|3808688_3809066_-	response regulator	W8CYM9	Bacillus_phage	5.7e-23	39.0
WP_041565438.1\|3809198_3810599_-	CHASE3 domain-containing protein	W8CYF6	Bacillus_phage	1.6e-22	32.6

DBSCAN-SWA_233

3818420 : 3819146

Feldmannia_irregularis_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409541.1\|3818420_3819146_+	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	2.1e-05	28.6

DBSCAN-SWA_234

3836064 : 3837939

Feldmannia_irregularis_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409553.1\|3836064_3837939_-	response regulator	Q6XM27	Feldmannia_irregularis_virus	2.4e-05	32.5

DBSCAN-SWA_235

3841502 : 3843608

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409556.1\|3841502_3843608_-	PAS domain S-box protein	A0A2K9L5I4	Tupanvirus	8.1e-10	25.3

DBSCAN-SWA_236

3849102 : 3849483

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409563.1\|3849102_3849483_+	peptidoglycan-binding protein	A0A2H4JGJ9	uncultured_Caudovirales_phage	9.2e-05	52.5

DBSCAN-SWA_237

3856144 : 3857374

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409567.1\|3856144_3857374_-	glutathione-dependent formaldehyde dehydrogenase	E3SJ82	Synechococcus_phage	4.3e-11	28.2

DBSCAN-SWA_238

3872804 : 4038722

112

Paenibacillus_phage(31.58%)

transposase,bacteriocin,integrase

attL 3868986:3869006|attR 3962785:3962805

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3868986:3869006	attL	NA	NA	NA	NA
WP_083782476.1\|3872804_3873305_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_052304615.1\|3874655_3874958_+\|transposase	transposase	NA	NA	NA	NA
WP_148220435.1\|3875042_3875333_+	DUF1392 family protein	NA	NA	NA	NA
WP_167315634.1\|3875375_3875549_-	hypothetical protein	NA	NA	NA	NA
WP_012409579.1\|3875627_3875825_-	DUF2811 domain-containing protein	NA	NA	NA	NA
WP_012409580.1\|3876344_3876761_+	hypothetical protein	NA	NA	NA	NA
WP_012409581.1\|3876844_3877663_+	hypothetical protein	NA	NA	NA	NA
WP_083782385.1\|3877605_3877908_-	hypothetical protein	NA	NA	NA	NA
WP_148220279.1\|3877900_3878146_-	hypothetical protein	NA	NA	NA	NA
WP_148220280.1\|3878147_3878597_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_012409582.1\|3879230_3879506_-	HU family DNA-binding protein	A0A2H4PAM3	Aphanizomenon_phage	2.8e-19	54.4
WP_012409583.1\|3879728_3880232_-	hypothetical protein	NA	NA	NA	NA
WP_041565444.1\|3880379_3880583_+	hypothetical protein	NA	NA	NA	NA
WP_012409584.1\|3880923_3881376_+	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	2.1e-11	31.7
WP_012409585.1\|3881814_3882576_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012409586.1\|3882632_3882893_-	hypothetical protein	NA	NA	NA	NA
WP_012409587.1\|3882889_3883321_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_148220325.1\|3883418_3883904_-	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_148220326.1\|3884061_3884268_+	hypothetical protein	NA	NA	NA	NA
WP_041565446.1\|3884609_3885200_+	flavodoxin family protein	NA	NA	NA	NA
WP_052304617.1\|3887267_3887567_+	hypothetical protein	NA	NA	NA	NA
WP_041565447.1\|3889123_3889339_+	transcriptional regulator	NA	NA	NA	NA
WP_012409590.1\|3889500_3890397_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012409591.1\|3890478_3890937_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_052304618.1\|3890962_3891733_+	DUF4158 domain-containing protein	A0A125RQ78	Bacillus_phage	6.1e-64	50.0
WP_052304619.1\|3891774_3892737_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	1.8e-52	34.8
WP_041565449.1\|3896218_3896911_-	DevA family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-78	66.4
WP_012409593.1\|3897057_3898386_-	calcium-binding protein	NA	NA	NA	NA
WP_012409594.1\|3899400_3901185_+	hypothetical protein	NA	NA	NA	NA
WP_012409595.1\|3901284_3906132_+	type I polyketide synthase	NA	NA	NA	NA
WP_012409596.1\|3906152_3906404_+	hypothetical protein	NA	NA	NA	NA
WP_012409597.1\|3906626_3907394_+	thioesterase	NA	NA	NA	NA
WP_012409598.1\|3907409_3907640_+	acyl carrier protein	NA	NA	NA	NA
WP_012409599.1\|3907690_3908626_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
WP_012409600.1\|3908610_3909642_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_012409601.1\|3909634_3910738_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_012409602.1\|3910815_3916440_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	4.8e-33	33.0
WP_083782404.1\|3916436_3923384_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	2.0e-41	31.5
WP_012409604.1\|3923371_3924598_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA
WP_012409605.1\|3924588_3925398_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_012409606.1\|3925463_3926210_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_012409607.1\|3926269_3926533_+	acyl carrier protein	NA	NA	NA	NA
WP_052304621.1\|3926626_3935179_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	7.8e-35	32.8
WP_012409609.1\|3935217_3939900_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	2.8e-34	32.9
WP_012409610.1\|3939943_3945562_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	2.0e-31	30.0
WP_052304622.1\|3945563_3951143_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	1.5e-31	32.4
WP_012409612.1\|3951139_3955345_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	4.1e-61	25.0
WP_012409613.1\|3955411_3956095_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_012409614.1\|3956191_3957514_+	ABC exporter membrane fusion protein	NA	NA	NA	NA
WP_012409615.1\|3957710_3958883_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_012409616.1\|3958946_3959396_-	SRPBCC family protein	NA	NA	NA	NA
WP_052304623.1\|3959445_3959889_-	YdhR family protein	NA	NA	NA	NA
WP_012409618.1\|3960012_3960618_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012409619.1\|3961281_3962622_-\|transposase	transposase	NA	NA	NA	NA
WP_012409620.1\|3963317_3963593_-	HU family DNA-binding protein	A3E2K9	Sodalis_phage	1.8e-18	56.2
3962785:3962805	attR	NA	NA	NA	NA
WP_012409621.1\|3963970_3964438_-	hypothetical protein	NA	NA	NA	NA
WP_012409622.1\|3964616_3965684_-	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_012409221.1\|3966578_3967889_+\|transposase	IS701-like element ISNpu5 family transposase	NA	NA	NA	NA
WP_012409624.1\|3968268_3968640_-	hypothetical protein	NA	NA	NA	NA
WP_012409625.1\|3968928_3969447_+	hypothetical protein	NA	NA	NA	NA
WP_148220327.1\|3970047_3970287_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_167315635.1\|3970296_3970443_-	hypothetical protein	NA	NA	NA	NA
WP_041565451.1\|3970527_3970713_+	hypothetical protein	NA	NA	NA	NA
WP_086000600.1\|3971412_3972459_+\|transposase	ISKra4-like element ISNpu15 family transposase	NA	NA	NA	NA
WP_012409627.1\|3972618_3973056_+	hypothetical protein	NA	NA	NA	NA
WP_012409629.1\|3974639_3975458_-	response regulator	NA	NA	NA	NA
WP_012409630.1\|3975519_3976659_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	5.5e-21	28.8
WP_012409631.1\|3977297_3978995_+	hypothetical protein	NA	NA	NA	NA
WP_012409632.1\|3979032_3981234_+	CHASE2 domain-containing protein	A0A2I2L395	Orpheovirus	2.6e-06	24.0
WP_012409633.1\|3981274_3982042_+	DUF928 domain-containing protein	NA	NA	NA	NA
WP_012409634.1\|3982180_3984730_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_012409635.1\|3984719_3988547_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_012409636.1\|3988719_3989034_-	Nif11-like leader peptide family RiPP precursor	NA	NA	NA	NA
WP_148220436.1\|3989163_3992502_-	type 2 lantipeptide synthetase LanM	NA	NA	NA	NA
WP_148220437.1\|3992799_3993924_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_012409639.1\|3994044_3994413_-	NHLP leader peptide family RiPP precursor	NA	NA	NA	NA
WP_012409640.1\|3994470_3994875_-	NHLP leader peptide family RiPP precursor	NA	NA	NA	NA
WP_012409642.1\|3995390_3995786_-	NHLP leader peptide family RiPP precursor	NA	NA	NA	NA
WP_012409643.1\|3995889_3996246_-	NHLP leader peptide family RiPP precursor	NA	NA	NA	NA
WP_012409644.1\|3996265_3996619_-	NHLP leader peptide family RiPP precursor	NA	NA	NA	NA
WP_012409645.1\|3997007_3998459_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_012409646.1\|3998477_4001078_+	hypothetical protein	NA	NA	NA	NA
WP_012409647.1\|4001233_4002025_+	MinD/ParA family protein	NA	NA	NA	NA
WP_012409648.1\|4002024_4003185_+	hypothetical protein	NA	NA	NA	NA
WP_012409649.1\|4003272_4004364_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_012409650.1\|4004419_4004884_+	hypothetical protein	NA	NA	NA	NA
WP_012409651.1\|4005096_4006560_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012409652.1\|4006916_4008374_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_148220328.1\|4008556_4009666_+\|transposase	ISKra4-like element ISNpu15 family transposase	NA	NA	NA	NA
WP_012409654.1\|4009918_4010542_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_012409655.1\|4010814_4011102_+	Nif11-like leader peptide family RiPP precursor	NA	NA	NA	NA
WP_012409656.1\|4011327_4011615_+	Nif11-like leader peptide family RiPP precursor	NA	NA	NA	NA
WP_012409657.1\|4011849_4012143_+	Nif11-like leader peptide family RiPP precursor	NA	NA	NA	NA
WP_012409658.1\|4012286_4013174_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012409659.1\|4013271_4017282_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.4e-71	31.5
WP_012409660.1\|4017564_4018296_+	hypothetical protein	NA	NA	NA	NA
WP_167315636.1\|4018409_4018547_+	hypothetical protein	NA	NA	NA	NA
WP_041565452.1\|4019115_4019316_-	hypothetical protein	NA	NA	NA	NA
WP_012409661.1\|4019644_4021105_+\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA
WP_012409662.1\|4021091_4023356_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	2.4e-36	26.2
WP_012409663.1\|4023348_4026267_+\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	W8CYL7	Bacillus_phage	1.3e-29	24.4
WP_167315637.1\|4026220_4026550_-	hypothetical protein	NA	NA	NA	NA
WP_076612125.1\|4027960_4029007_+\|transposase	ISKra4-like element ISNpu15 family transposase	NA	NA	NA	NA
WP_012409665.1\|4030151_4030844_+	hypothetical protein	NA	NA	NA	NA
WP_052304625.1\|4032148_4032334_+	hypothetical protein	NA	NA	NA	NA
WP_012409666.1\|4033925_4034162_-	hypothetical protein	NA	NA	NA	NA
WP_012409667.1\|4034637_4035381_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.7e-37	38.1
WP_012409668.1\|4035609_4035897_+	hypothetical protein	NA	NA	NA	NA
WP_041565456.1\|4036342_4037155_-	TniQ family protein	NA	NA	NA	NA
WP_193372265.1\|4037173_4037533_-	hypothetical protein	NA	NA	NA	NA
WP_083782349.1\|4037727_4038270_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_148220329.1\|4038266_4038722_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_239

4043676 : 4045383

Wolbachia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409673.1\|4043676_4045383_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.5e-38	25.6

DBSCAN-SWA_240

4049514 : 4050054

Pithovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409679.1\|4049514_4050054_-	DNA starvation/stationary phase protection protein	W5S6G8	Pithovirus	4.2e-11	27.6

DBSCAN-SWA_241

4064981 : 4069395

Microcystis_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083782477.1\|4064981_4066391_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	2.0e-81	59.6
WP_041565461.1\|4068464_4068665_-	hypothetical protein	NA	NA	NA	NA
WP_012409693.1\|4068741_4069395_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.4e-37	45.3

DBSCAN-SWA_242

4093222 : 4093546

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409708.1\|4093222_4093546_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.5e-11	40.2

DBSCAN-SWA_243

4097090 : 4098089

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409712.1\|4097090_4098089_+	RNA polymerase sigma factor, RpoD/SigA family	F4YCU2	Synechococcus_phage	9.1e-44	34.5

DBSCAN-SWA_244

4102200 : 4173538

Cyanophage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409717.1\|4102200_4102974_+	phosphonate ABC transporter ATP-binding protein	F2Y165	Organic_Lake_phycodnavirus	1.3e-05	23.8
WP_012409718.1\|4103021_4103957_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012409719.1\|4104122_4104935_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_012409720.1\|4105052_4106045_+	2-hydroxyacid dehydrogenase	A0A2R8FCS0	Cedratvirus	2.2e-26	30.6
WP_167315638.1\|4106201_4106375_+	hypothetical protein	NA	NA	NA	NA
WP_012409721.1\|4106663_4107971_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012409722.1\|4108446_4109469_+	decarboxylating 6-phosphogluconate dehydrogenase	M4SJX8	Cyanophage	2.1e-96	52.2
WP_012409723.1\|4109480_4110860_+	glucose-6-phosphate dehydrogenase	M4SP85	Cyanophage	3.4e-81	38.3
WP_086000586.1\|4111272_4112504_-\|transposase	ISAzo13-like element ISNpu10 family transposase	NA	NA	NA	NA
WP_083782408.1\|4112556_4114068_-	alpha-D-glucose phosphate-specific phosphoglucomutase	NA	NA	NA	NA
WP_041565466.1\|4114301_4114934_-	response regulator transcription factor	NA	NA	NA	NA
WP_012409725.1\|4114930_4115767_-	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_012409726.1\|4116355_4117267_-	PDZ domain-containing protein	NA	NA	NA	NA
WP_012409727.1\|4117534_4118164_-	TenA family protein	NA	NA	NA	NA
WP_012409728.1\|4118475_4121793_-	type 2 lantipeptide synthetase LanM	NA	NA	NA	NA
WP_012409729.1\|4122140_4122422_-	hypothetical protein	NA	NA	NA	NA
WP_012409730.1\|4122938_4123712_-	hypothetical protein	NA	NA	NA	NA
WP_012409731.1\|4123856_4124297_-	hypothetical protein	NA	NA	NA	NA
WP_012409732.1\|4124646_4125867_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_012409733.1\|4125957_4126770_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_193372280.1\|4126934_4128830_-	AAA family ATPase	Q677Q6	Lymphocystis_disease_virus	4.4e-23	44.0
WP_148220330.1\|4129286_4129796_-\|transposase	transposase	NA	NA	NA	NA
WP_148220331.1\|4129847_4130093_-\|transposase	transposase	NA	NA	NA	NA
WP_012409735.1\|4130098_4131241_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012409736.1\|4131756_4133523_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_012409737.1\|4133661_4135074_-	hypothetical protein	NA	NA	NA	NA
WP_012409739.1\|4136440_4137223_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_012409740.1\|4137222_4139067_-	N-6 DNA methylase	B3GAM1	uncultured_virus	1.8e-21	38.4
WP_012409742.1\|4139789_4140521_-	hypothetical protein	NA	NA	NA	NA
WP_012409743.1\|4144626_4147563_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_012409744.1\|4147703_4151231_-	hypothetical protein	NA	NA	NA	NA
WP_012409745.1\|4151250_4153155_-	hypothetical protein	NA	NA	NA	NA
WP_012409746.1\|4153410_4155729_-	caspase family protein	NA	NA	NA	NA
WP_012409747.1\|4155833_4156820_-	DUF1822 family protein	NA	NA	NA	NA
WP_012409748.1\|4156868_4157648_-	hypothetical protein	NA	NA	NA	NA
WP_012409749.1\|4158608_4160927_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_148220332.1\|4160941_4161493_-	hypothetical protein	NA	NA	NA	NA
WP_148220333.1\|4161969_4162305_+	hypothetical protein	NA	NA	NA	NA
WP_012409752.1\|4162444_4164544_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_012409754.1\|4167586_4168003_+	four helix bundle protein	NA	NA	NA	NA
WP_012409755.1\|4168153_4168636_+	hypothetical protein	NA	NA	NA	NA
WP_012409221.1\|4168699_4170010_+\|transposase	IS701-like element ISNpu5 family transposase	NA	NA	NA	NA
WP_167315639.1\|4170031_4170175_+	hypothetical protein	NA	NA	NA	NA
WP_012409756.1\|4172464_4173538_-\|transposase	IS66 family transposase	NA	NA	NA	NA

DBSCAN-SWA_245

4181872 : 4197833

Paenibacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409759.1\|4181872_4183702_+	fatty acyl-AMP ligase	A0A1V0SBX8	Catovirus	7.3e-07	21.4
WP_148220334.1\|4183685_4183865_+	hypothetical protein	NA	NA	NA	NA
WP_052304700.1\|4184446_4184740_+	acyl carrier protein	NA	NA	NA	NA
WP_148220335.1\|4184895_4186269_+	hypothetical protein	NA	NA	NA	NA
WP_012409762.1\|4186428_4191183_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	1.0e-39	35.4
WP_012409763.1\|4191200_4197833_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	4.6e-35	34.4

DBSCAN-SWA_246

4209526 : 4210477

uncultured_marine_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409772.1\|4209526_4210477_+	class I SAM-dependent methyltransferase	A0A0F7L2G1	uncultured_marine_virus	3.4e-08	27.6

DBSCAN-SWA_247

4220945 : 4225416

Aeromonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409778.1\|4220945_4221515_-	recombinase family protein	A0A219Y912	Aeromonas_phage	3.3e-22	39.1
WP_041565474.1\|4222067_4222793_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012409779.1\|4222686_4225416_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	5.3e-62	35.5

DBSCAN-SWA_248

4241753 : 4242335

Escherichia_phage(100.0%)

integrase

attL 4241454:4241470|attR 4249413:4249429

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4241454:4241470	attL	NA	NA	NA	NA
WP_012409794.1\|4241753_4242335_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	6.3e-29	39.8
WP_012409794.1\|4241753_4242335_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	6.3e-29	39.8
4249413:4249429	attR	NA	NA	NA	NA

DBSCAN-SWA_249

4263099 : 4276754

Paenibacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409810.1\|4263099_4268529_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	1.4e-50	39.1
WP_012409811.1\|4268624_4273505_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	3.6e-61	43.0
WP_012409812.1\|4273514_4276754_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.4e-72	32.4

DBSCAN-SWA_250

4279949 : 4307041

Tupanvirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409815.1\|4279949_4285829_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	4.2e-56	42.4
WP_167315644.1\|4285895_4291169_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	2.1e-91	25.9
WP_012409817.1\|4291413_4294320_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	1.4e-57	42.7
WP_012409818.1\|4294353_4297581_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	3.2e-82	25.1
WP_012409819.1\|4297586_4298348_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012409820.1\|4298363_4302434_-	TauD/TfdA family dioxygenase	A0A2K9L3I8	Tupanvirus	1.4e-29	23.5
WP_012409821.1\|4302445_4307041_-	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	7.5e-85	25.5

DBSCAN-SWA_251

4314186 : 4317444

Paenibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409828.1\|4314186_4317444_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	1.6e-49	38.8

DBSCAN-SWA_252

4322224 : 4330413

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409833.1\|4322224_4325485_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.5e-74	30.1
WP_012409834.1\|4325508_4326558_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_012409835.1\|4326876_4330413_-	AMP-binding protein	A0A1V0SBX8	Catovirus	8.9e-09	21.7

DBSCAN-SWA_253

4335921 : 4337220

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409838.1\|4335921_4337220_+	MFS transporter	D0R099	Streptococcus_phage	3.6e-24	28.7

DBSCAN-SWA_254

4346633 : 4355725

Acidianus_tailed_spindle_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409845.1\|4346633_4348622_-	ATP-binding protein	A0A109WUE1	Acidianus_tailed_spindle_virus	1.3e-09	35.3
WP_012409846.1\|4348618_4349893_-	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_012409847.1\|4350290_4352261_+	protein kinase	A0A2P1EMR8	Moumouvirus	4.2e-16	27.1
WP_012409848.1\|4352326_4353928_-	hypothetical protein	NA	NA	NA	NA
WP_041566257.1\|4354852_4355725_+	glucose 1-dehydrogenase	A0A2N9QUX2	Trichoplusia_ni_ascovirus	9.3e-61	45.4

DBSCAN-SWA_255

4379696 : 4381745

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409866.1\|4379696_4380776_+	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	1.1e-111	58.8
WP_012409867.1\|4380800_4381745_+	GDP-L-fucose synthase	A0A1D8KUY4	Synechococcus_phage	1.4e-62	40.5

DBSCAN-SWA_256

4398113 : 4401391

Planktothrix_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409881.1\|4398113_4400741_-	U32 family peptidase	Q6DW11	Phage_TP	2.3e-25	34.5
WP_012409882.1\|4400948_4401164_+	type II toxin-antitoxin system HicA family toxin	G9BWD4	Planktothrix_phage	6.1e-14	54.8
WP_012409883.1\|4401160_4401391_+	type II toxin-antitoxin system HicB family antitoxin	G9BWD3	Planktothrix_phage	5.4e-08	44.8

DBSCAN-SWA_257

4404455 : 4412901

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409886.1\|4404455_4406129_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase RibB/GTP cyclohydrolase II RibA	A0A2H4PQS2	Staphylococcus_phage	4.7e-101	48.0
WP_012409887.1\|4406462_4407521_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_012409888.1\|4407639_4408929_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	8.5e-135	57.3
WP_012409889.1\|4409186_4409621_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_012409890.1\|4410261_4412901_+	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	3.1e-115	34.6

DBSCAN-SWA_258

4417941 : 4419930

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409895.1\|4417941_4419930_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.3e-52	26.5

DBSCAN-SWA_259

4424425 : 4427530

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409897.1\|4424425_4427530_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	5.5e-55	33.7

DBSCAN-SWA_260

4433604 : 4434306

Stenotrophomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409903.1\|4433604_4434306_-	SOS response-associated peptidase	V9IQW7	Stenotrophomonas_phage	4.7e-31	37.6

DBSCAN-SWA_261

4446872 : 4461814

Bacillus_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409918.1\|4446872_4448927_+	response regulator	W8CYF6	Bacillus_phage	2.7e-26	31.8
WP_012409919.1\|4448989_4449361_-	DUF2237 domain-containing protein	NA	NA	NA	NA
WP_012409920.1\|4449990_4450659_+	hypothetical protein	NA	NA	NA	NA
WP_012408859.1\|4451533_4452616_+	photosystem II q(b) protein	A0A127KM98	Cyanophage	3.1e-191	88.8
WP_012409921.1\|4454734_4459135_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	8.4e-25	31.1
WP_012409922.1\|4459404_4459839_-	hypothetical protein	NA	NA	NA	NA
WP_012409923.1\|4459960_4461814_+	peptidase S8	A0A217EQY2	Bacillus_phage	8.1e-30	37.5

DBSCAN-SWA_262

4492631 : 4502327

Bacillus_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409940.1\|4492631_4497146_-	PAS domain-containing protein	W8CYF6	Bacillus_phage	2.5e-24	32.6
WP_012409941.1\|4498013_4499102_+	chorismate synthase	A0A291AU41	Pandoravirus	4.7e-102	55.2
WP_012409942.1\|4499234_4499531_-	DUF3288 family protein	NA	NA	NA	NA
WP_012409943.1\|4499873_4502327_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	6.8e-133	41.0

DBSCAN-SWA_263

4511223 : 4518013

Helicobacter_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409951.1\|4511223_4513272_-	DNA primase	A0A1S5RFK0	Helicobacter_phage	1.1e-38	31.3
WP_012409952.1\|4513413_4514766_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	8.0e-27	27.9
WP_012409953.1\|4514897_4517057_-	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	3.1e-89	38.0
WP_041565499.1\|4517301_4517601_+	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.2e-12	38.9
WP_012409954.1\|4517584_4518013_+	transcriptional regulator	A0A222YXG1	Escherichia_phage	2.2e-07	36.8

DBSCAN-SWA_264

4524662 : 4533673

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409959.1\|4524662_4527782_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	2.3e-29	32.3
WP_012409960.1\|4528077_4529379_-	adenylate/guanylate cyclase with integral membrane sensor	NA	NA	NA	NA
WP_012409961.1\|4529490_4531116_+	DEAD/DEAH box helicase family protein	A0A2D2W2K3	Stenotrophomonas_phage	2.7e-13	28.8
WP_012409962.1\|4531045_4532260_+	DUF790 family protein	NA	NA	NA	NA
WP_012409963.1\|4532341_4533673_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	4.9e-53	33.2

DBSCAN-SWA_265

4538040 : 4542039

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409968.1\|4538040_4538745_+	DevA family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.2e-88	74.7
WP_012409969.1\|4539175_4540357_+	CapA family protein	NA	NA	NA	NA
WP_012409970.1\|4540434_4542039_-	serine/threonine protein kinase	A0A2H4UVE2	Bodo_saltans_virus	2.1e-13	28.6

DBSCAN-SWA_266

4549018 : 4550344

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409976.1\|4549018_4550344_-	insulinase family protein	G3MBJ8	Bacillus_virus	8.7e-34	25.9

DBSCAN-SWA_267

4583336 : 4584392

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012409998.1\|4583336_4584392_-	photosystem II D2 protein (photosystem q(a) protein)	A0A1D8KQ83	Synechococcus_phage	2.4e-188	88.9

DBSCAN-SWA_268

4599647 : 4600679

Prochlorococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410012.1\|4599647_4600679_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.3e-05	26.2

DBSCAN-SWA_269

4605282 : 4611999

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410017.1\|4605282_4607118_+	molybdate ABC transporter permease subunit	G9BWD6	Planktothrix_phage	1.4e-18	32.4
WP_041566276.1\|4607239_4607611_-	ferredoxin	NA	NA	NA	NA
WP_012410019.1\|4608150_4609215_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_012410020.1\|4609371_4610115_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.1e-41	41.6
WP_012410021.1\|4610244_4610445_-	hypothetical protein	NA	NA	NA	NA
WP_041565504.1\|4610499_4611999_-	cryptochrome/photolyase family protein	E3T4R9	Cafeteria_roenbergensis_virus	7.0e-56	29.8

DBSCAN-SWA_270

4622707 : 4623967

Erysipelothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410032.1\|4622707_4623967_+	MFS transporter	A0A2K5B2B5	Erysipelothrix_phage	1.4e-17	24.9

DBSCAN-SWA_271

4631473 : 4633948

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410039.1\|4631473_4633948_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	4.9e-14	35.5

DBSCAN-SWA_272

4637216 : 4637882

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410044.1\|4637216_4637882_-	class I SAM-dependent methyltransferase	W8CYT3	Bacillus_phage	2.7e-12	32.8

DBSCAN-SWA_273

4647192 : 4652859

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410052.1\|4647192_4652859_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	1.2e-39	32.2

DBSCAN-SWA_274

4678489 : 4690768

Natrialba_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410075.1\|4678489_4680001_-	AAA family ATPase	Q8JL10	Natrialba_phage	2.4e-19	38.1
WP_012410076.1\|4680120_4680492_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_012410077.1\|4680589_4682536_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.5e-29	33.7
WP_012410078.1\|4683219_4685445_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	3.2e-129	38.5
WP_012410079.1\|4685935_4686952_-	sulfate/molybdate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.5e-27	34.1
WP_012410080.1\|4687046_4687586_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_012410081.1\|4687792_4689013_+	geranylgeranyl reductase	NA	NA	NA	NA
WP_052304632.1\|4689319_4690768_-	FAD-binding protein	A0A2K9L3G7	Tupanvirus	2.7e-57	32.8

DBSCAN-SWA_275

4696283 : 4699811

Cyanophage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410088.1\|4696283_4696583_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A127KLM9	Cyanophage	2.8e-33	74.2
WP_012410089.1\|4697073_4698789_-	SpoIID/LytB domain-containing protein	Q2XU88	Pseudomonas_phage	1.1e-15	28.2
WP_012410090.1\|4698904_4699168_+	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_012410091.1\|4699319_4699811_+	DNA starvation/stationary phase protection protein	A0A2H4N7L5	Lake_Baikal_phage	9.1e-21	37.3

DBSCAN-SWA_276

4712520 : 4713903

Orpheovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410102.1\|4712520_4713903_+	cytochrome P450	A0A2I2L481	Orpheovirus	1.1e-18	31.2

DBSCAN-SWA_277

4725968 : 4728908

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410110.1\|4725968_4728908_-	aminomethyl-transferring glycine dehydrogenase	M4QFZ1	Prochlorococcus_phage	3.0e-284	54.4

DBSCAN-SWA_278

4735936 : 4738615

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410117.1\|4735936_4738615_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	2.2e-36	21.5

DBSCAN-SWA_279

4741702 : 4747024

Bacillus_phage(100.0%)

bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410119.1\|4741702_4747024_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	2.6e-28	26.4

DBSCAN-SWA_280

4753461 : 4754340

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410125.1\|4753461_4754340_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.2e-33	36.8

DBSCAN-SWA_281

4760159 : 4766135

Salmon_gill_poxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410134.1\|4760159_4766135_+	AAA family ATPase	A0A0H4Y184	Salmon_gill_poxvirus	7.7e-13	31.9

DBSCAN-SWA_282

4787828 : 4793577

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410149.1\|4787828_4788506_-	response regulator transcription factor	W8CYM9	Bacillus_phage	7.5e-34	35.3
WP_012410150.1\|4788739_4789603_+	phycobilisome rod-core linker polypeptide	NA	NA	NA	NA
WP_012410151.1\|4789671_4790409_+	phycobilisome rod-core linker polypeptide	NA	NA	NA	NA
WP_012410152.1\|4791324_4793577_+	PAS domain S-box protein	W8CYF6	Bacillus_phage	3.3e-17	27.4

DBSCAN-SWA_283

4797125 : 4798217

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410155.1\|4797125_4798217_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	1.8e-16	25.9

DBSCAN-SWA_284

4804823 : 4804991

Phormidium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565510.1\|4804823_4804991_-	NblA/ycf18 family protein	U5XGZ2	Phormidium_phage	8.1e-06	53.8

DBSCAN-SWA_285

4817169 : 4821774

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410173.1\|4817169_4819428_+	photosystem I core protein PsaA	A0A0K0KVP2	Prochlorococcus_phage	0.0e+00	68.2
WP_012410174.1\|4819548_4821774_+	photosystem I core protein PsaB	A0A0K0KW31	Prochlorococcus_phage	0.0e+00	71.2

DBSCAN-SWA_286

4826199 : 4828029

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410180.1\|4826199_4828029_-	response regulator	A0A1V0SGX0	Hokovirus	1.1e-31	28.5

DBSCAN-SWA_287

4832008 : 4837624

Salmon_gill_poxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410185.1\|4832008_4837624_+	AAA family ATPase	A0A0H4Y184	Salmon_gill_poxvirus	9.4e-13	29.7

DBSCAN-SWA_288

4857586 : 4859215

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410201.1\|4857586_4859215_-	peptide chain release factor 3	E4ZFJ7	Streptococcus_phage	7.4e-35	26.6

DBSCAN-SWA_289

4864520 : 4867461

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410206.1\|4864520_4865507_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.2e-35	38.2
WP_041566300.1\|4865578_4865992_+	hypothetical protein	NA	NA	NA	NA
WP_012410208.1\|4866089_4866560_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041565516.1\|4866522_4867461_-	HAMP domain-containing histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	2.6e-08	25.3

DBSCAN-SWA_290

4873856 : 4877348

Moraxella_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410216.1\|4873856_4874906_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.5e-62	41.7
WP_012410217.1\|4875173_4875668_+	photosystem I reaction center protein PsaF subunit III	B7T4D2	uncultured_virus	4.5e-12	38.9
WP_012410218.1\|4875707_4875857_+	photosystem I reaction center subunit IX	NA	NA	NA	NA
WP_012410219.1\|4876130_4876652_+	photosystem I reaction center protein subunit XI	NA	NA	NA	NA
WP_012410220.1\|4876751_4877348_-	guanylate kinase	A0A0M5KCK5	Mollivirus	4.2e-12	33.8

DBSCAN-SWA_291

4883354 : 4883678

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410226.1\|4883354_4883678_-	DUF1825 family protein	V5USJ3	Synechococcus_phage	4.6e-05	27.8

DBSCAN-SWA_292

4899769 : 4903101

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410238.1\|4899769_4901848_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.7e-64	27.4
WP_012410239.1\|4901871_4903101_+	elongation factor Tu	E3T5Q0	Cafeteria_roenbergensis_virus	4.3e-19	31.3

DBSCAN-SWA_293

4906627 : 4907284

Chrysochromulina_ericina_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410243.1\|4906627_4907284_-	ribonuclease HII	A0A0N9QYD4	Chrysochromulina_ericina_virus	4.9e-22	40.5

DBSCAN-SWA_294

4925198 : 4925966

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566304.1\|4925198_4925966_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	8.0e-16	33.5

DBSCAN-SWA_295

4930916 : 4931962

Pandoravirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410265.1\|4930916_4931402_-	nucleoside deaminase	S4VYZ2	Pandoravirus	7.3e-07	44.6
WP_012410266.1\|4931647_4931962_-	glutaredoxin 3	A0A292GD95	Xanthomonas_phage	6.2e-07	43.3

DBSCAN-SWA_296

4937178 : 4937961

Cedratvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410273.1\|4937178_4937961_-	ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	1.6e-11	29.0

DBSCAN-SWA_297

4947347 : 4948001

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410280.1\|4947347_4948001_-	hypothetical protein	G9BWI1	Planktothrix_phage	2.5e-10	39.8

DBSCAN-SWA_298

4951143 : 4952019

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410285.1\|4951143_4952019_-	DNA-formamidopyrimidine glycosylase	G3MA33	Bacillus_virus	2.7e-23	32.3

DBSCAN-SWA_299

4960452 : 4961958

Hirudovirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565524.1\|4960452_4961958_+\|tRNA	cysteine--tRNA ligase	V5L406	Hirudovirus	6.2e-44	27.8

DBSCAN-SWA_300

4965936 : 4966488

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410299.1\|4965936_4966488_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	6.8e-25	43.7

DBSCAN-SWA_301

4978673 : 4979009

Streptomyces_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410311.1\|4978673_4979009_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.3e-12	37.4

DBSCAN-SWA_302

4989678 : 4990962

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410321.1\|4989678_4990962_+	diguanylate cyclase	G3MA91	Bacillus_virus	8.4e-26	39.8

DBSCAN-SWA_303

5028497 : 5031425

Agrobacterium_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410351.1\|5028497_5029055_-	exonuclease	A0A2L0UZL4	Agrobacterium_phage	1.3e-34	40.8
WP_012410352.1\|5029292_5031047_-\|tRNA	arginine--tRNA ligase	A0A2K9L2F0	Tupanvirus	2.3e-103	40.4
WP_012410353.1\|5031242_5031425_+	type II toxin-antitoxin system HicA family toxin	D6R431	Bacillus_phage	3.2e-08	50.0

DBSCAN-SWA_304

5045184 : 5047155

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410363.1\|5045184_5047155_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	7.9e-116	39.4

DBSCAN-SWA_305

5055541 : 5059725

Klosneuvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410369.1\|5055541_5056591_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.0e-66	40.2
WP_012410370.1\|5056883_5058029_+	transaldolase	NA	NA	NA	NA
WP_012410371.1\|5058195_5059725_+	glucose-6-phosphate dehydrogenase	M4SP85	Cyanophage	1.4e-96	41.6

DBSCAN-SWA_306

5063457 : 5064804

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410374.1\|5063457_5064804_-	histidine kinase	A0A1V0SGX0	Hokovirus	1.8e-07	24.2

DBSCAN-SWA_307

5069215 : 5070496

uncultured_Mediterranean_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410380.1\|5069215_5070496_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.0e-84	41.8

DBSCAN-SWA_308

5078674 : 5084310

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410392.1\|5078674_5079238_+	peptide deformylase	E3SLL2	Synechococcus_phage	2.3e-20	38.0
WP_012410393.1\|5079248_5079452_+	hypothetical protein	NA	NA	NA	NA
WP_193372245.1\|5079746_5079884_-	hypothetical protein	NA	NA	NA	NA
WP_012410394.1\|5080331_5081162_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_012410395.1\|5081215_5081845_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012410396.1\|5081859_5084310_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.0e-44	26.5

DBSCAN-SWA_309

5106484 : 5113469

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410415.1\|5106484_5107813_-	insulinase family protein	G3MBJ8	Bacillus_virus	1.9e-33	24.0
WP_041565531.1\|5108060_5113469_-	AAA family ATPase	A0A0H4Y184	Salmon_gill_poxvirus	6.1e-09	31.2

DBSCAN-SWA_310

5122325 : 5131809

Micromonas_sp._RCC1109_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410426.1\|5122325_5123948_-	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	1.4e-06	27.3
WP_012410427.1\|5124035_5124716_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012410428.1\|5124806_5125250_+	(2Fe-2S) ferredoxin domain-containing protein	NA	NA	NA	NA
WP_012410429.1\|5125300_5125963_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012410430.1\|5126385_5131809_-	AAA family ATPase	A0A0G2YB36	Acanthamoeba_polyphaga_mimivirus	5.5e-18	27.7

DBSCAN-SWA_311

5135005 : 5138006

Cyanophage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410434.1\|5135005_5135683_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	C7F482	Cyanophage	6.0e-07	30.4
WP_012410435.1\|5135691_5136399_-	hypothetical protein	NA	NA	NA	NA
WP_012410436.1\|5137022_5138006_-	RNA polymerase sigma factor, RpoD/SigA family	F4YCU2	Synechococcus_phage	1.7e-42	37.4

DBSCAN-SWA_312

5142976 : 5150220

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565533.1\|5142976_5143882_-	polysaccharide deacetylase family protein	A0A2K9L357	Tupanvirus	8.6e-09	29.1
WP_012410441.1\|5144529_5145828_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_012410442.1\|5145934_5146123_+	ChaB family protein	NA	NA	NA	NA
WP_012410443.1\|5146223_5146874_+	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA
WP_041566325.1\|5146882_5148166_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	1.3e-07	22.7
WP_041565534.1\|5148324_5148654_-	hypothetical protein	NA	NA	NA	NA
WP_012410445.1\|5148652_5148907_+	DUF2811 domain-containing protein	NA	NA	NA	NA
WP_041565535.1\|5149500_5150220_-	response regulator transcription factor	W8CYM9	Bacillus_phage	5.2e-41	39.0

DBSCAN-SWA_313

5155865 : 5161310

Klosneuvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410452.1\|5155865_5156645_-	phosphate ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	1.2e-14	29.5
WP_012410453.1\|5157198_5157978_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-15	30.2
WP_012410454.1\|5158178_5159060_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_012410455.1\|5159112_5160090_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_012410456.1\|5160266_5161310_-	phosphate ABC transporter substrate-binding protein PstS	E3SII0	Synechococcus_phage	5.4e-55	37.9

DBSCAN-SWA_314

5175067 : 5177191

Bacteriophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410468.1\|5175067_5177191_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	1.1e-57	37.5

DBSCAN-SWA_315

5185657 : 5187331

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410476.1\|5185657_5187331_+	response regulator	W8CYF6	Bacillus_phage	1.0e-15	25.8

DBSCAN-SWA_316

5200840 : 5205013

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410486.1\|5200840_5201839_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	1.4e-52	37.4
WP_012410487.1\|5202219_5202873_+	hypothetical protein	NA	NA	NA	NA
WP_012410488.1\|5203261_5205013_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.1e-51	31.0

DBSCAN-SWA_317

5211282 : 5213757

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410493.1\|5211282_5211981_+	DevA family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-84	71.6
WP_012410494.1\|5212821_5213757_+	M23 family metallopeptidase	A0A7K9	Microcystis_virus	3.0e-17	36.4

DBSCAN-SWA_318

5218411 : 5221027

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410501.1\|5218411_5221027_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	2.5e-202	45.6

DBSCAN-SWA_319

5225549 : 5226236

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410505.1\|5225549_5226236_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.9e-27	29.6

DBSCAN-SWA_320

5230371 : 5231091

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410510.1\|5230371_5231091_-	response regulator transcription factor	W8CYM9	Bacillus_phage	6.6e-36	38.4

DBSCAN-SWA_321

5235283 : 5235811

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410514.1\|5235283_5235811_-	CAP domain-containing protein	U5Q1E2	Bacillus_phage	5.9e-10	34.9

DBSCAN-SWA_322

5241516 : 5243934

Acinetobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410522.1\|5241516_5242407_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.7e-46	43.0
WP_012410523.1\|5242503_5243934_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.3e-38	28.1

DBSCAN-SWA_323

5251725 : 5252646

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410527.1\|5251725_5252646_+	histone deacetylase	A0A2K9KZC4	Tupanvirus	1.1e-38	29.4

DBSCAN-SWA_324

5260702 : 5261473

Ostreococcus_lucimarinus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410535.1\|5260702_5261473_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	3.5e-35	35.7

DBSCAN-SWA_325

5282515 : 5285833

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410553.1\|5282515_5285833_-	PAS domain-containing protein	W8CYF6	Bacillus_phage	1.5e-26	33.3

DBSCAN-SWA_326

5289025 : 5291151

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410556.1\|5289025_5289778_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.9e-39	41.0
WP_012410557.1\|5289831_5291151_+	histidine kinase	W8CYF6	Bacillus_phage	1.3e-21	29.9

DBSCAN-SWA_327

5297303 : 5298965

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410562.1\|5297303_5298965_+	iron uptake porin	Q5GQG9	Synechococcus_phage	2.6e-11	26.9

DBSCAN-SWA_328

5319984 : 5322316

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410586.1\|5319984_5321079_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	6.6e-88	48.0
WP_012410587.1\|5321122_5322316_+	serine/threonine protein kinase	A0A1B1IUU3	uncultured_Mediterranean_phage	6.9e-14	31.7

DBSCAN-SWA_329

5355455 : 5356277

Burkholderia_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410613.1\|5355455_5356277_+	signal peptide peptidase SppA	Q8W6U6	Burkholderia_virus	9.8e-12	30.7

DBSCAN-SWA_330

5367365 : 5370925

Stx2-converting_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410622.1\|5367365_5367641_+	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.5e-09	35.2
WP_012410623.1\|5367648_5368044_+	transcriptional regulator	NA	NA	NA	NA
WP_012410624.1\|5368223_5369711_-	serine/threonine protein kinase	M1IB61	Acanthocystis_turfacea_Chlorella_virus	5.2e-11	25.3
WP_012410625.1\|5369899_5370925_-	serine/threonine protein kinase	A0A2R8FF19	Brazilian_cedratvirus	1.0e-13	28.0

DBSCAN-SWA_331

5384216 : 5385158

Lactobacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410638.1\|5384216_5385158_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	5.4e-14	23.1

DBSCAN-SWA_332

5391211 : 5391982

Bacillus_thuringiensis_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410643.1\|5391211_5391982_+	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	6.4e-37	39.9

DBSCAN-SWA_333

5409393 : 5410254

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410661.1\|5409393_5410254_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	1.4e-21	29.1

DBSCAN-SWA_334

5424215 : 5425013

Streptococcus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410673.1\|5424215_5425013_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	4.4e-09	27.2

DBSCAN-SWA_335

5432170 : 5433412

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410680.1\|5432170_5433412_+	DNA cytosine methyltransferase	Q38652	Bacillus_phage	8.1e-26	26.4

DBSCAN-SWA_336

5442512 : 5444198

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410688.1\|5442512_5444198_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.3e-58	29.9

DBSCAN-SWA_337

5483443 : 5494224

Bacillus_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410738.1\|5483443_5484544_+	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	6.1e-09	25.1
WP_012410739.1\|5484688_5485492_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012410740.1\|5485588_5485897_+	methyltransferase	NA	NA	NA	NA
WP_012410741.1\|5485903_5487298_-	cytochrome P450	V5UQK0	Mycobacterium_phage	2.3e-24	25.9
WP_012410742.1\|5487384_5488191_-	TIGR01548 family HAD-type hydrolase	NA	NA	NA	NA
WP_086000604.1\|5488564_5488777_-	hypothetical protein	NA	NA	NA	NA
WP_012410743.1\|5489162_5489633_-	DUF29 domain-containing protein	A0JC30	Ralstonia_phage	2.3e-21	45.1
WP_012410744.1\|5489770_5490070_+	30S ribosomal protein PSRP-3	NA	NA	NA	NA
WP_148220349.1\|5490079_5492008_-	protein kinase	Q0N495	Clanis_bilineata_nucleopolyhedrovirus	1.1e-05	27.3
WP_012410746.1\|5492118_5494224_-	flotillin family protein	A0A2I7RWB7	Vibrio_phage	2.9e-15	24.1

DBSCAN-SWA_338

5504729 : 5510307

Cronobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410756.1\|5504729_5507348_+	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	1.4e-120	37.4
WP_041565560.1\|5507515_5508082_-	cyclase	NA	NA	NA	NA
WP_012410758.1\|5508494_5508689_+	hypothetical protein	NA	NA	NA	NA
WP_012410759.1\|5508848_5509010_+	rubredoxin	NA	NA	NA	NA
WP_012410760.1\|5509062_5510307_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	2.9e-15	44.4

DBSCAN-SWA_339

5519306 : 5527569

Leuconostoc_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410763.1\|5519306_5519999_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	A0A097BYE1	Leuconostoc_phage	8.9e-06	25.2
WP_012410764.1\|5520068_5521025_-	response regulator	NA	NA	NA	NA
WP_012410765.1\|5521136_5521379_-	hypothetical protein	NA	NA	NA	NA
WP_012410766.1\|5521655_5522744_+	hypothetical protein	NA	NA	NA	NA
WP_012410767.1\|5522800_5524027_-	AAA family ATPase	A0A248SJ84	Salicola_phage	1.1e-14	25.9
WP_012410768.1\|5524150_5526568_+	ATP-dependent helicase	A7KV33	Bacillus_phage	3.7e-06	22.3
WP_012410769.1\|5526728_5526896_+	hypothetical protein	NA	NA	NA	NA
WP_012410770.1\|5526993_5527569_-	GNAT family N-acetyltransferase	A0A0N9SKF6	Staphylococcus_phage	9.5e-38	45.9

DBSCAN-SWA_340

5537779 : 5538907

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565565.1\|5537779_5538907_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.9e-28	35.7

DBSCAN-SWA_341

5543144 : 5544203

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566361.1\|5543144_5544203_+	serine hydrolase	A0A218M8S6	Mycobacterium_phage	1.8e-18	27.5

DBSCAN-SWA_342

5547555 : 5548878

Vibrio_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410788.1\|5547555_5548878_+\|tRNA	CCA tRNA nucleotidyltransferase	A0A0U4J6Z1	Vibrio_phage	1.0e-18	34.6

DBSCAN-SWA_343

5555556 : 5556141

Cassava_brown_streak_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410795.1\|5555556_5556141_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	D2KCJ6	Cassava_brown_streak_virus	1.8e-15	31.9

DBSCAN-SWA_344

5569710 : 5570385

Dinoroseobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410803.1\|5569710_5570385_+	7-cyano-7-deazaguanine synthase QueC	A0A1V0DY95	Dinoroseobacter_phage	1.1e-29	37.2

DBSCAN-SWA_345

5573826 : 5575881

Prochlorococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410807.1\|5573826_5574450_+	orotate phosphoribosyltransferase	Q58MW1	Prochlorococcus_phage	1.9e-31	46.3
WP_012410808.1\|5574960_5575881_+	ornithine carbamoyltransferase	Q84489	Paramecium_bursaria_Chlorella_virus	6.5e-20	29.0

DBSCAN-SWA_346

5598740 : 5599961

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410830.1\|5598740_5599961_-	EAL domain-containing response regulator	W8CYM9	Bacillus_phage	2.0e-13	29.5

DBSCAN-SWA_347

5611537 : 5613742

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410838.1\|5611537_5613742_-	CHASE2 domain-containing protein	G3MA91	Bacillus_virus	4.8e-29	44.9

DBSCAN-SWA_348

5618796 : 5620326

Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410842.1\|5618796_5620326_+	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-55	35.3

DBSCAN-SWA_349

5644036 : 5646702

Sphingomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410862.1\|5644036_5645113_+	glucose-1-phosphate thymidylyltransferase	H9NC64	Sphingomonas_phage	3.0e-40	38.0
WP_012410863.1\|5645229_5645775_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	4.3e-48	47.9
WP_012410864.1\|5645811_5646702_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.5e-34	38.7

DBSCAN-SWA_350

5656877 : 5664245

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410873.1\|5656877_5657555_-	energy-coupling factor ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.8e-17	32.9
WP_012410874.1\|5657568_5657841_-	hypothetical protein	NA	NA	NA	NA
WP_012409998.1\|5658198_5659254_+	photosystem II D2 protein (photosystem q(a) protein)	A0A1D8KQ83	Synechococcus_phage	2.4e-188	88.9
WP_012410875.1\|5660008_5660290_+	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_012410876.1\|5660944_5662651_+	iron uptake porin	Q5GQG9	Synechococcus_phage	1.9e-09	31.1
WP_041565571.1\|5662898_5664245_-	serine hydrolase	Q38058	Escherichia_phage	1.2e-06	28.6

DBSCAN-SWA_351

5668378 : 5668633

Erythrobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410880.1\|5668378_5668633_-	acyl carrier protein	A0A1P8VVJ5	Erythrobacter_phage	7.2e-06	42.9

DBSCAN-SWA_352

5680037 : 5692080

Indivirus(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410891.1\|5680037_5682698_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	3.0e-110	33.2
WP_041566368.1\|5683138_5683432_+	hypothetical protein	NA	NA	NA	NA
WP_012410893.1\|5683418_5684465_+	hypothetical protein	A0A075BS46	Microcystis_phage	5.8e-33	29.2
WP_012410894.1\|5684855_5686460_-	iron uptake porin	Q5GQG9	Synechococcus_phage	2.4e-09	33.1
WP_193372283.1\|5686840_5687782_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012410896.1\|5687880_5688657_+	metal ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-11	28.4
WP_012410897.1\|5688668_5689538_+	metal ABC transporter permease	NA	NA	NA	NA
WP_041566371.1\|5690352_5692080_-	fibronectin-binding domain-containing protein	A0A0P0YM59	Yellowstone_lake_phycodnavirus	1.3e-13	38.1

DBSCAN-SWA_353

5699301 : 5703686

Prochlorococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410905.1\|5699301_5700018_-	heme oxygenase (biliverdin-producing)	Q58M64	Prochlorococcus_phage	7.2e-51	43.1
WP_012410906.1\|5700610_5701030_-	hypothetical protein	NA	NA	NA	NA
WP_012410907.1\|5701044_5701989_-	hypothetical protein	NA	NA	NA	NA
WP_012410908.1\|5702107_5702893_-	DUF1906 domain-containing protein	NA	NA	NA	NA
WP_012410909.1\|5702981_5703686_-	peptidoglycan-binding protein	A0A172JII6	Bacillus_phage	1.4e-06	38.5

DBSCAN-SWA_354

5709231 : 5710719

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410913.1\|5709231_5710719_-	AMP-binding protein	A0A2K9L3I8	Tupanvirus	6.6e-14	22.5

DBSCAN-SWA_355

5736670 : 5737417

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410937.1\|5736670_5737417_+	urea ABC transporter ATP-binding protein UrtD	G9BWD6	Planktothrix_phage	3.6e-13	26.2

DBSCAN-SWA_356

5741674 : 5742373

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410942.1\|5741674_5742373_+	urea ABC transporter ATP-binding subunit UrtE	G9BWD6	Planktothrix_phage	1.3e-20	29.6

DBSCAN-SWA_357

5750780 : 5752421

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410951.1\|5750780_5752421_-	FHA domain-containing protein	A0A218MLZ2	uncultured_virus	3.1e-25	31.6

DBSCAN-SWA_358

5756595 : 5757801

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410956.1\|5756595_5757801_+	M23 family metallopeptidase	G9BW84	Planktothrix_phage	3.4e-21	40.4

DBSCAN-SWA_359

5771743 : 5772547

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410968.1\|5771743_5772547_+	prohibitin family protein	A0A1X9SG52	Bacillus_phage	4.8e-11	22.5

DBSCAN-SWA_360

5776530 : 5781815

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410974.1\|5776530_5777265_-	redoxin family protein	A0A1D8KSL1	Synechococcus_phage	1.9e-46	56.2
WP_012410975.1\|5777344_5778274_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_012410976.1\|5778295_5779117_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_012410977.1\|5779248_5779734_-	glutathione peroxidase	Q6VZR0	Canarypox_virus	1.4e-21	39.0
WP_012410978.1\|5780354_5781815_+	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	7.3e-58	34.2

DBSCAN-SWA_361

5790627 : 5864977

Anomala_cuprea_entomopoxvirus(16.67%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012410985.1\|5790627_5791521_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_063721251.1\|5791629_5791860_-	hypothetical protein	NA	NA	NA	NA
WP_167315544.1\|5791828_5792050_-	hypothetical protein	NA	NA	NA	NA
WP_041565582.1\|5792439_5792646_+	hypothetical protein	NA	NA	NA	NA
WP_041565583.1\|5792960_5793155_-	hypothetical protein	NA	NA	NA	NA
WP_012410986.1\|5793170_5794280_-	type I restriction enzyme HsdR N-terminal domain-containing protein	NA	NA	NA	NA
WP_012410987.1\|5794811_5795663_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-23	29.9
WP_012410988.1\|5795619_5796474_+	ABC transporter permease	NA	NA	NA	NA
WP_012410989.1\|5796493_5796967_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012410990.1\|5796932_5798201_+	MFS transporter	NA	NA	NA	NA
WP_012410991.1\|5798408_5798870_-	hypothetical protein	NA	NA	NA	NA
WP_012410992.1\|5799754_5801503_-	DNA repair protein RecN	NA	NA	NA	NA
WP_012410993.1\|5801773_5803765_+	AarF/ABC1/UbiB kinase family protein	A0A0P0CRP3	Ostreococcus_lucimarinus_virus	1.2e-50	30.5
WP_052304646.1\|5803919_5804453_-	adenylyl-sulfate kinase	NA	NA	NA	NA
WP_012410995.1\|5805481_5810275_+	cadherin-like domain-containing protein	NA	NA	NA	NA
WP_012410996.1\|5810536_5811907_-	DUF3370 domain-containing protein	NA	NA	NA	NA
WP_012410997.1\|5812148_5812583_-	hypothetical protein	NA	NA	NA	NA
WP_012410998.1\|5812816_5815801_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.1e-156	39.7
WP_041565584.1\|5815858_5816281_+	GxxExxY protein	E5ESB4	Bathycoccus_sp._RCC1105_virus	8.1e-10	33.3
WP_012410999.1\|5816317_5817583_+	MFS transporter	NA	NA	NA	NA
WP_012411000.1\|5817713_5818670_+	ATPase	NA	NA	NA	NA
WP_012411001.1\|5818696_5819437_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_012411002.1\|5819816_5821331_-	GH3 auxin-responsive promoter family protein	NA	NA	NA	NA
WP_012411003.1\|5821330_5821939_-	hypothetical protein	NA	NA	NA	NA
WP_148220447.1\|5821935_5822682_-	sterol desaturase family protein	NA	NA	NA	NA
WP_012411005.1\|5822752_5823775_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_012411006.1\|5823951_5824743_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_148220352.1\|5824955_5826587_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012411008.1\|5826646_5826937_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_012411010.1\|5828200_5829106_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_012411011.1\|5829089_5830151_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_012411012.1\|5830156_5830897_-	hypothetical protein	NA	NA	NA	NA
WP_012411013.1\|5831157_5832162_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_012411014.1\|5832145_5832568_-	DUF962 domain-containing protein	NA	NA	NA	NA
WP_012411016.1\|5832998_5833775_-	hypothetical protein	NA	NA	NA	NA
WP_012411017.1\|5833884_5834199_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012411018.1\|5834254_5835961_-	D-aminoacylase	NA	NA	NA	NA
WP_012411019.1\|5836080_5836461_-	PIN domain-containing protein	NA	NA	NA	NA
WP_012411020.1\|5836470_5836731_-	hypothetical protein	NA	NA	NA	NA
WP_012411021.1\|5836949_5837894_-	hypothetical protein	NA	NA	NA	NA
WP_012411022.1\|5838017_5839301_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_012411023.1\|5839309_5839948_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012411024.1\|5840370_5842500_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_012411025.1\|5843396_5844920_+	glycosyltransferase	NA	NA	NA	NA
WP_041565588.1\|5844922_5845429_-\|transposase	transposase	NA	NA	NA	NA
WP_041565589.1\|5845394_5845745_-\|transposase	transposase	NA	NA	NA	NA
WP_012411026.1\|5846131_5848072_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_012411027.1\|5848221_5848731_-	hypothetical protein	NA	NA	NA	NA
WP_012411028.1\|5849361_5850471_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_012411029.1\|5850608_5851880_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_012411030.1\|5852331_5853627_+	chloride channel protein	NA	NA	NA	NA
WP_012411031.1\|5853795_5854248_-	DUF2214 family protein	NA	NA	NA	NA
WP_012411032.1\|5854498_5854762_+	hypothetical protein	NA	NA	NA	NA
WP_041566385.1\|5854793_5855732_-	ABC transporter permease	NA	NA	NA	NA
WP_148220448.1\|5855808_5856858_-	ABC transporter permease	NA	NA	NA	NA
WP_086000586.1\|5856944_5858175_+\|transposase	ISAzo13-like element ISNpu10 family transposase	NA	NA	NA	NA
WP_012411035.1\|5858379_5859006_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_012411036.1\|5859170_5860637_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	5.1e-11	29.6
WP_012411037.1\|5860805_5861864_-	BMP family protein	NA	NA	NA	NA
WP_052304709.1\|5862117_5862549_-	hypothetical protein	NA	NA	NA	NA
WP_012411039.1\|5863387_5864977_+	AAA family ATPase	K4I1H4	Acidithiobacillus_phage	3.5e-21	28.5

DBSCAN-SWA_362

5874359 : 5874908

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411049.1\|5874359_5874908_-	PadR family transcriptional regulator	H9EB19	Vibrio_phage	6.1e-10	39.2

DBSCAN-SWA_363

5878401 : 5882225

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566390.1\|5878401_5878779_-	response regulator	W8CYM9	Bacillus_phage	2.8e-14	40.8
WP_012411054.1\|5878853_5882225_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	8.1e-44	32.5

DBSCAN-SWA_364

5886826 : 5889043

Ectocarpus_siliculosus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411058.1\|5886826_5889043_-	PAS domain S-box protein	Q8QKV7	Ectocarpus_siliculosus_virus	1.7e-29	27.7

DBSCAN-SWA_365

5892647 : 5897064

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411064.1\|5892647_5894795_-	DHH family phosphoesterase	A7KV88	Bacillus_phage	3.0e-52	25.8
WP_012411065.1\|5894878_5895304_-	hypothetical protein	NA	NA	NA	NA
WP_167315545.1\|5895386_5895626_+	hypothetical protein	NA	NA	NA	NA
WP_012411066.1\|5896233_5897064_-	phosphate ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	7.1e-10	30.1

DBSCAN-SWA_366

5908495 : 5912018

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411077.1\|5908495_5908882_-	response regulator	W8CYM9	Bacillus_phage	5.6e-10	33.1
WP_012411078.1\|5909048_5912018_-	response regulator	A0A1V0SGX0	Hokovirus	3.0e-26	28.7

DBSCAN-SWA_367

5916603 : 5919912

Feldmannia_species_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411081.1\|5916603_5919912_-	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	6.1e-12	26.8

DBSCAN-SWA_368

5924413 : 5924959

Bodo_saltans_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411085.1\|5924413_5924959_+	RNA 2'-phosphotransferase	A0A2H4UTN1	Bodo_saltans_virus	1.9e-40	45.9

DBSCAN-SWA_369

5928506 : 5929616

Burkholderia_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411089.1\|5928506_5929616_-	site-specific DNA-methyltransferase	C5IHN3	Burkholderia_virus	6.9e-69	49.2

DBSCAN-SWA_370

5950851 : 5951115

Rhizobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411107.1\|5950851_5951115_+	glutaredoxin 3	V9QKN6	Rhizobium_phage	1.9e-09	40.3

DBSCAN-SWA_371

5966118 : 5966895

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565597.1\|5966118_5966895_+	RNA polymerase sigma factor SigF	A0A0Y0AU18	Bacillus_phage	1.6e-19	31.7

DBSCAN-SWA_372

5975390 : 5981952

Cedratvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411126.1\|5975390_5976182_+	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	2.8e-11	26.7
WP_012411127.1\|5976181_5977555_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_012411128.1\|5977569_5978832_+	cysteine desulfurase	Q2XUY6	environmental_halophage	7.1e-110	46.4
WP_012411129.1\|5978935_5979544_+	hypothetical protein	NA	NA	NA	NA
WP_012411130.1\|5979545_5980178_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_012411131.1\|5980208_5980841_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_012411132.1\|5980875_5981952_-	ParA family protein	H2BD62	Pseudomonas_phage	5.8e-36	33.2

DBSCAN-SWA_373

6013202 : 6014219

Stenotrophomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411156.1\|6013202_6014219_+	UDP-glucose 4-epimerase GalE	A0A2D2W2J1	Stenotrophomonas_phage	1.9e-36	33.9

DBSCAN-SWA_374

6036893 : 6039524

Streptomyces_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411174.1\|6036893_6039524_+	trans-splicing intein-formed DNA polymerase III subunit alpha N-terminal partner DnaE-N	A0A1C9LWZ5	Streptomyces_phage	5.3e-160	40.8

DBSCAN-SWA_375

6046198 : 6048040

Ostreococcus_tauri_virus(100.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411183.1\|6046198_6048040_+\|protease	ATP-dependent zinc metalloprotease FtsH3	A9YVR1	Ostreococcus_tauri_virus	2.4e-135	47.1

DBSCAN-SWA_376

6056092 : 6060564

Microcystis_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411191.1\|6056092_6058039_+	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	1.7e-86	62.1
WP_012411192.1\|6058191_6059031_+	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	6.0e-81	59.2
WP_012411193.1\|6059140_6059485_+	diversity-generating retroelement protein Avd	NA	NA	NA	NA
WP_012411194.1\|6059505_6060564_+	RNA-directed DNA polymerase	A0A0N7AE80	Bacillus_phage	1.8e-66	38.9

DBSCAN-SWA_377

6070614 : 6075242

Klosneuvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411203.1\|6070614_6072207_+	restriction endonuclease subunit S	A0A1V0SLK8	Klosneuvirus	3.6e-10	26.3
WP_012411204.1\|6072474_6073464_+	hypothetical protein	NA	NA	NA	NA
WP_012411205.1\|6073715_6075242_+	recombinase family protein	A0A291AWQ5	Streptomyces_phage	1.6e-07	29.6

DBSCAN-SWA_378

6104489 : 6109276

Clostridioides_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411228.1\|6104489_6105245_-	serine/threonine protein phosphatase	A0A2R2ZGN5	Clostridioides_phage	5.5e-17	29.2
WP_012411229.1\|6105497_6105782_+	DUF2470 domain-containing protein	NA	NA	NA	NA
WP_012411230.1\|6106120_6109276_-	DUF3854 domain-containing protein	D4HTY1	Vibrio_phage	2.5e-18	28.7

DBSCAN-SWA_379

6112959 : 6113529

Aureococcus_anophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411234.1\|6112959_6113529_-	peptidylprolyl isomerase	A0A076FI46	Aureococcus_anophage	1.9e-22	41.5

DBSCAN-SWA_380

6139007 : 6140321

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148220449.1\|6139007_6140321_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	3.7e-21	31.1

DBSCAN-SWA_381

6143607 : 6144891

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411258.1\|6143607_6144891_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	7.1e-33	30.0

DBSCAN-SWA_382

6149417 : 6150194

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411262.1\|6149417_6150194_-	class I SAM-dependent methyltransferase	A0A1X9I669	Streptococcus_phage	6.5e-05	34.9

DBSCAN-SWA_383

6171624 : 6181088

Emiliania_huxleyi_virus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411284.1\|6171624_6174924_+	DNA-directed RNA polymerase subunit beta	G8DH04	Emiliania_huxleyi_virus	4.7e-36	24.0
WP_012411285.1\|6175040_6176918_+	DNA-directed RNA polymerase subunit gamma	A0A2I7QNZ7	Vibrio_phage	3.6e-49	29.5
WP_012411286.1\|6177038_6181088_+	DNA-directed RNA polymerase subunit beta''	G8DGX1	Emiliania_huxleyi_virus	6.4e-11	23.8

DBSCAN-SWA_384

6192793 : 6195706

Bandra_megavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411297.1\|6192793_6195706_-	insulinase family protein	A0A2K9V7S4	Bandra_megavirus	9.8e-22	31.5

DBSCAN-SWA_385

6207248 : 6207533

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010998076.1\|6207248_6207533_+	HU family DNA-binding protein	A7KV42	Bacillus_phage	2.3e-16	51.7

DBSCAN-SWA_386

6221276 : 6223630

uncultured_Mediterranean_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411320.1\|6221276_6222485_-	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	6.9e-22	29.0
WP_012411321.1\|6222736_6223630_+	M23 family metallopeptidase	G3MBP9	Bacillus_virus	9.4e-08	41.4

DBSCAN-SWA_387

6230275 : 6230839

Yellowstone_lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411327.1\|6230275_6230839_+	type 1 glutamine amidotransferase	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	3.0e-20	33.9

DBSCAN-SWA_388

6235096 : 6243297

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411331.1\|6235096_6237460_+	response regulator	W8CYM9	Bacillus_phage	2.0e-28	33.6
WP_148220450.1\|6237738_6243297_+	PAS domain S-box protein	Q8QKV7	Ectocarpus_siliculosus_virus	1.3e-38	31.3

DBSCAN-SWA_389

6247824 : 6249841

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411336.1\|6247824_6249360_+	response regulator	A0A1V0SGX0	Hokovirus	6.3e-28	34.1
WP_012411337.1\|6249466_6249841_+	response regulator	W8CYM9	Bacillus_phage	2.3e-08	33.9

DBSCAN-SWA_390

6256781 : 6273700

Bacillus_phage(60.0%)

transposase,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411342.1\|6256781_6259046_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	3.1e-31	25.9
WP_012411343.1\|6259165_6259690_+	hypothetical protein	NA	NA	NA	NA
WP_012411344.1\|6259830_6262716_+\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	W8CYL7	Bacillus_phage	2.4e-36	27.1
WP_012411345.1\|6263049_6263505_-	hypothetical protein	NA	NA	NA	NA
WP_012411346.1\|6264065_6265292_+	(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_012411348.1\|6265689_6266973_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	5.3e-28	28.8
WP_041565620.1\|6267068_6267254_-\|transposase	DDE transposase family protein	NA	NA	NA	NA
WP_012411349.1\|6267675_6268173_+	hypothetical protein	NA	NA	NA	NA
WP_012411350.1\|6268509_6269349_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_041565621.1\|6269428_6269821_-	nuclease A inhibitor family protein	NA	NA	NA	NA
WP_041566414.1\|6269937_6270834_-\|protease	membrane protease subunit, stomatin/prohibitin	A0A172JI70	Bacillus_phage	4.8e-20	30.7
WP_012411354.1\|6271651_6273700_-	elongation factor G	E4ZFJ7	Streptococcus_phage	5.3e-38	23.7

DBSCAN-SWA_391

6287980 : 6292744

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411367.1\|6287980_6288712_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.7e-16	29.5
WP_012411368.1\|6288889_6289729_+	DUF4351 domain-containing protein	NA	NA	NA	NA
WP_041565623.1\|6289822_6290191_+	hypothetical protein	NA	NA	NA	NA
WP_083782434.1\|6290162_6290435_+	hypothetical protein	NA	NA	NA	NA
WP_012411369.1\|6290450_6291221_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.5e-19	28.2
WP_148220452.1\|6291220_6292744_-	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0S9M4	Catovirus	4.1e-64	34.7

DBSCAN-SWA_392

6300699 : 6304464

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411380.1\|6300699_6304464_+	PAS domain S-box protein	W8CYF6	Bacillus_phage	1.5e-22	29.0

DBSCAN-SWA_393

6318499 : 6327422

Powai_lake_megavirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411393.1\|6318499_6320392_+	protein kinase	A0A167RIZ6	Powai_lake_megavirus	3.2e-13	27.8
WP_012411394.1\|6320570_6321359_-	ABC-2 family transporter protein	NA	NA	NA	NA
WP_012411395.1\|6321410_6322391_-	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	2.6e-19	33.3
WP_012411396.1\|6322678_6324325_-	AarF/ABC1/UbiB kinase family protein	A0A0R6PKQ6	Moraxella_phage	3.5e-40	28.5
WP_012411397.1\|6324355_6324643_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_012411398.1\|6324721_6325786_-	mannose-1-phosphate guanylyltransferase	NA	NA	NA	NA
WP_012411399.1\|6325901_6327422_+	LCP family protein	A0A1X9I5X1	Streptococcus_phage	6.9e-11	27.3

DBSCAN-SWA_394

6350990 : 6351695

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_193372284.1\|6350990_6351695_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-34	38.0

DBSCAN-SWA_395

6359833 : 6360580

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411423.1\|6359833_6360580_+	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	2.7e-32	36.6

DBSCAN-SWA_396

6367962 : 6373633

Synechococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411430.1\|6367962_6368175_+	high light inducible protein	F5B3V7	Synechococcus_phage	1.4e-07	52.5
WP_012411431.1\|6368239_6368479_+	hypothetical protein	NA	NA	NA	NA
WP_012411432.1\|6369289_6370819_-	anthranilate synthase component I	S4VT78	Pandoravirus	8.2e-44	30.9
WP_012411433.1\|6370915_6371341_-	photosystem I reaction center subunit II	A0A0K0KWQ5	Prochlorococcus_phage	3.4e-32	49.3
WP_012411434.1\|6371623_6373633_-	GAF domain-containing protein	A0A1V0SGX0	Hokovirus	1.4e-19	30.5

DBSCAN-SWA_397

6377412 : 6386732

Klosneuvirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411436.1\|6377412_6379506_+	S9 family peptidase	A0A1V0SHT0	Klosneuvirus	6.1e-66	32.6
WP_012411437.1\|6379571_6379847_-	hypothetical protein	NA	NA	NA	NA
WP_052304710.1\|6380301_6383061_+	insulinase family protein	G3MBJ8	Bacillus_virus	6.6e-28	27.5
WP_012411439.1\|6383654_6384278_-	DUF4231 domain-containing protein	A0A1B1ISC9	uncultured_Mediterranean_phage	4.2e-15	30.3
WP_012411440.1\|6384281_6385034_-	hypothetical protein	NA	NA	NA	NA
WP_012411441.1\|6385448_6386732_+	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	9.1e-97	49.9

DBSCAN-SWA_398

6390006 : 6392513

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411445.1\|6390006_6391413_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.9e-77	36.7
WP_012411446.1\|6391562_6392513_-	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	5.7e-80	46.5

DBSCAN-SWA_399

6396052 : 6396250

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411449.1\|6396052_6396250_-	DUF3252 domain-containing protein	M4QFU1	Prochlorococcus_phage	5.1e-07	52.8

DBSCAN-SWA_400

6406389 : 6406725

Yellowstone_lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411461.1\|6406389_6406725_-	GxxExxY protein	A0A0P0YNF4	Yellowstone_lake_phycodnavirus	3.2e-09	35.9

DBSCAN-SWA_401

6414325 : 6415354

Only_Syngen_Nebraska_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566425.1\|6414325_6415354_+	aspartate carbamoyltransferase catalytic subunit	A0A1J0F9B8	Only_Syngen_Nebraska_virus	1.0e-21	30.6

DBSCAN-SWA_402

6424029 : 6425112

Cyanophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012408859.1\|6424029_6425112_-	photosystem II q(b) protein	A0A127KM98	Cyanophage	3.1e-191	88.8

DBSCAN-SWA_403

6441890 : 6443576

Tupanvirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411486.1\|6441890_6443576_-\|tRNA	lysine--tRNA ligase	A0A2K9KZX5	Tupanvirus	2.3e-100	40.2

DBSCAN-SWA_404

6451892 : 6463789

uncultured_marine_virus(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411495.1\|6451892_6452138_+	photosystem I iron-sulfur center protein PsaC	C7EDU4	uncultured_marine_virus	5.3e-22	92.6
WP_012411496.1\|6452530_6454411_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	3.9e-112	39.8
WP_012411497.1\|6454676_6456350_+	AIPR family protein	D0UIM0	Aggregatibacter_phage	9.1e-105	36.5
WP_012411498.1\|6456453_6457749_-	hypothetical protein	NA	NA	NA	NA
WP_012411499.1\|6457963_6458884_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_012411500.1\|6459071_6460652_-	phosphoglycerate dehydrogenase	A0A2H4PQU8	Staphylococcus_phage	2.2e-20	27.8
WP_012411501.1\|6461276_6462080_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_012411502.1\|6462178_6463789_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.9e-15	33.3

DBSCAN-SWA_405

6467797 : 6468883

Acanthamoeba_polyphaga_mimivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411506.1\|6467797_6468883_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	2.1e-22	48.6

DBSCAN-SWA_406

6479477 : 6480971

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411517.1\|6479477_6480971_+	catalase	A0A2K9L0T1	Tupanvirus	6.0e-100	44.4

DBSCAN-SWA_407

6490501 : 6495177

Phormidium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411524.1\|6490501_6491410_-	peptidoglycan-binding protein	U5XGQ7	Phormidium_phage	5.7e-61	59.1
WP_012411525.1\|6491906_6492386_-	hypothetical protein	NA	NA	NA	NA
WP_012411526.1\|6492593_6493892_+	hypothetical protein	NA	NA	NA	NA
WP_041566432.1\|6494031_6495177_-	SpoIID/LytB domain-containing protein	Q2XU88	Pseudomonas_phage	3.5e-23	32.6

DBSCAN-SWA_408

6519556 : 6520075

Tetraselmis_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411544.1\|6519556_6520075_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.4e-25	45.8

DBSCAN-SWA_409

6539772 : 6540756

Yokapox_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411558.1\|6539772_6540756_+	NAD-dependent epimerase/dehydratase family protein	G3EI41	Yokapox_virus	5.9e-11	28.3

DBSCAN-SWA_410

6566507 : 6567887

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411581.1\|6566507_6567887_+	serine/threonine protein kinase	A0A1V0SGY7	Hokovirus	4.8e-11	30.6

DBSCAN-SWA_411

6575033 : 6582123

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411586.1\|6575033_6575504_-	NADAR family protein	A0A1V0SEI8	Hokovirus	4.0e-18	39.0
WP_012411587.1\|6575648_6577142_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_012411588.1\|6577138_6577822_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.5e-34	36.4
WP_012411589.1\|6577972_6578242_+	hypothetical protein	NA	NA	NA	NA
WP_041566439.1\|6578357_6578984_+	hypothetical protein	NA	NA	NA	NA
WP_012411591.1\|6579117_6579678_-	HdeD family acid-resistance protein	NA	NA	NA	NA
WP_012411592.1\|6580509_6582123_-	iron uptake porin	Q5GQG9	Synechococcus_phage	5.3e-09	31.6

DBSCAN-SWA_412

6585611 : 6590954

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411595.1\|6585611_6587168_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-20	31.8
WP_012411596.1\|6587444_6588467_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012411597.1\|6588505_6589501_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012411598.1\|6590057_6590954_-	inositol oxygenase	A0A2K9L6K3	Tupanvirus	2.1e-63	48.7

DBSCAN-SWA_413

6610048 : 6622210

Liberibacter_phage(40.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411612.1\|6610048_6610312_+	helix-turn-helix transcriptional regulator	Q786F1	Bacillus_phage	1.7e-05	44.8
WP_012411613.1\|6610632_6612687_+	N-6 DNA methylase	A0A220A2U4	Liberibacter_phage	2.2e-23	25.3
WP_012411614.1\|6612683_6614006_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_012411615.1\|6614350_6617587_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	2.4e-08	25.2
WP_012411616.1\|6617868_6618360_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_012411617.1\|6618534_6619923_+	YvcK family protein	A1IMD5	Streptococcus_phage	1.5e-49	38.2
WP_041565661.1\|6619930_6620386_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_012411619.1\|6621034_6622210_-	patatin-like phospholipase family protein	A0A1B2LRS3	Wolbachia_phage	4.4e-21	27.8

DBSCAN-SWA_414

6630802 : 6632638

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411624.1\|6630802_6632638_+	EAL domain-containing protein	W8CYM9	Bacillus_phage	4.7e-14	39.8

DBSCAN-SWA_415

6638429 : 6640322

Organic_Lake_phycodnavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411628.1\|6638429_6640322_+	ABC transporter ATP-binding protein	F2Y165	Organic_Lake_phycodnavirus	1.1e-18	29.0

DBSCAN-SWA_416

6645636 : 6650612

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411635.1\|6645636_6647430_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.3e-60	30.7
WP_012411636.1\|6647485_6649285_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.0e-58	32.3
WP_012411637.1\|6649324_6649579_+	TIGR03643 family protein	NA	NA	NA	NA
WP_012411638.1\|6649594_6650128_+	dihydrofolate reductase	NA	NA	NA	NA
WP_012411639.1\|6650264_6650612_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	4.9e-13	45.3

DBSCAN-SWA_417

6653760 : 6655431

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411644.1\|6653760_6655431_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.6e-23	36.9

DBSCAN-SWA_418

6682782 : 6685304

Streptococcus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411665.1\|6682782_6683745_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	2.1e-77	51.9
WP_012411666.1\|6684077_6685304_-\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.5e-24	27.1

DBSCAN-SWA_419

6693160 : 6696812

Tupanvirus(50.0%)

tRNA,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411674.1\|6693160_6694573_-\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	6.2e-38	26.8
WP_012411675.1\|6694698_6695145_-	DUF3598 family protein	NA	NA	NA	NA
WP_167315665.1\|6695195_6695360_-	hypothetical protein	NA	NA	NA	NA
WP_012411676.1\|6695533_6695725_-	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_012411677.1\|6695855_6696254_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_012411678.1\|6696470_6696812_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	I3ULH6	Synechococcus_phage	1.4e-20	50.0

DBSCAN-SWA_420

6703611 : 6704436

Oenococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411684.1\|6703611_6704436_+	glycosyltransferase family 2 protein	V9QJB1	Oenococcus_phage	7.3e-07	25.0

DBSCAN-SWA_421

6709906 : 6711055

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411689.1\|6709906_6711055_+	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L470	Tupanvirus	1.3e-38	34.1

DBSCAN-SWA_422

6719629 : 6726528

uncultured_Caudovirales_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411696.1\|6719629_6720928_-	phosphatase PAP2 family protein	A0A1V0SKZ4	Klosneuvirus	1.8e-47	33.9
WP_012411697.1\|6721515_6722571_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_012411698.1\|6722767_6723913_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4J8U8	uncultured_Caudovirales_phage	3.5e-108	52.9
WP_012411699.1\|6723902_6724496_+	hypothetical protein	A0A2H4J5X1	uncultured_Caudovirales_phage	1.1e-44	50.0
WP_041565672.1\|6724501_6725155_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_012411701.1\|6725349_6726528_+	sulfate adenylyltransferase	A0A2K9L0F0	Tupanvirus	1.8e-46	35.2

DBSCAN-SWA_423

6734947 : 6737879

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411708.1\|6734947_6736030_-	photosystem II q(b) protein	E3SIM8	Synechococcus_phage	2.4e-191	88.8
WP_012411709.1\|6736379_6737879_-	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	9.7e-58	34.5

DBSCAN-SWA_424

6753196 : 6760011

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411720.1\|6753196_6756871_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	1.4e-17	34.2
WP_012411721.1\|6757110_6758292_-	catalase	NA	NA	NA	NA
WP_012411722.1\|6758382_6760011_-	heme peroxidase	G8XT72	Simian_cytomegalovirus	7.3e-51	28.7

DBSCAN-SWA_425

6766851 : 6777650

Mycoplasma_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411730.1\|6766851_6767985_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	5.7e-18	38.7
WP_012411731.1\|6768095_6768875_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.3e-66	58.6
WP_041565677.1\|6769143_6771954_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.3e-50	34.5
WP_012411733.1\|6771972_6773292_+	hybrid sensor histidine kinase/response regulator	W8CYM9	Bacillus_phage	1.6e-16	31.0
WP_012411734.1\|6773361_6774096_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_012411735.1\|6774173_6774848_-	energy-coupling factor ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	1.7e-09	25.5
WP_012411736.1\|6775315_6776248_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012411737.1\|6776339_6776792_+	DUF3531 family protein	NA	NA	NA	NA
WP_012411738.1\|6776800_6777232_+	NUDIX hydrolase	NA	NA	NA	NA
WP_012411739.1\|6777269_6777650_-	type II toxin-antitoxin system HicB family antitoxin	A0A0K2CZV4	Paenibacillus_phage	4.5e-20	46.8

DBSCAN-SWA_426

6782115 : 6782379

Gordonia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411743.1\|6782115_6782379_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2P1N333	Gordonia_phage	2.6e-14	48.2

DBSCAN-SWA_427

6789637 : 6792394

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148220365.1\|6789637_6792394_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	6.1e-74	31.9

DBSCAN-SWA_428

6801244 : 6802546

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411754.1\|6801244_6802546_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	1.6e-48	32.2

DBSCAN-SWA_429

6811855 : 6812839

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411759.1\|6811855_6812839_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.1e-31	39.2

DBSCAN-SWA_430

6829367 : 6830936

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411777.1\|6829367_6830936_+	translation initiation factor IF-2 N-terminal domain-containing protein	W8CYM9	Bacillus_phage	9.0e-14	38.2

DBSCAN-SWA_431

6839059 : 6840229

Spodoptera_littoralis_nuclear_polyhedrosis_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148220456.1\|6839059_6840229_+	serine/threonine protein kinase	P89912	Spodoptera_littoralis_nuclear_polyhedrosis_virus	1.5e-08	25.1

DBSCAN-SWA_432

6847963 : 6849298

Natrialba_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411793.1\|6847963_6849298_+	AAA family ATPase	Q8JL10	Natrialba_phage	4.2e-12	33.3

DBSCAN-SWA_433

6879507 : 6880212

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411823.1\|6879507_6880212_-	DevA family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.3e-84	70.4

DBSCAN-SWA_434

6884143 : 6884881

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411826.1\|6884143_6884881_-	phycocyanobilin:ferredoxin oxidoreductase	A0A0E3HIH2	Synechococcus_phage	1.4e-33	36.5

DBSCAN-SWA_435

6896461 : 6900867

Streptomyces_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411836.1\|6896461_6896785_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	7.0e-22	46.6
WP_012411837.1\|6897151_6898315_-	GuaB3 family IMP dehydrogenase-related protein	A0A1B1IS93	uncultured_Mediterranean_phage	4.1e-11	33.1
WP_012411838.1\|6898655_6899186_-	YdcF family protein	NA	NA	NA	NA
WP_012411839.1\|6899613_6900867_-	exonuclease SbcCD subunit D	G3MA97	Bacillus_virus	9.7e-27	26.2

DBSCAN-SWA_436

6905425 : 6907699

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411844.1\|6905425_6907699_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	2.0e-14	37.9

DBSCAN-SWA_437

6912284 : 6913118

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411848.1\|6912284_6913118_-	class I SAM-dependent methyltransferase	A0A2P1JQT7	Mycobacterium_phage	4.2e-10	33.5

DBSCAN-SWA_438

6924796 : 6927190

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411860.1\|6924796_6927190_-	response regulator	A0A1V0SGX0	Hokovirus	1.8e-13	22.7

DBSCAN-SWA_439

6947565 : 6949644

Synechococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411878.1\|6947565_6948063_-	HNH endonuclease	F5B475	Synechococcus_phage	1.3e-30	43.9
WP_012411879.1\|6948456_6949644_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	2.0e-34	29.5

DBSCAN-SWA_440

6954338 : 6960367

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411885.1\|6954338_6957161_+	GAF domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	3.7e-10	44.3
WP_012411886.1\|6957322_6960367_+	hybrid sensor histidine kinase/response regulator	Q56AR1	Bacillus_thuringiensis_phage	1.8e-13	38.5

DBSCAN-SWA_441

6964272 : 6969190

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565688.1\|6964272_6965046_+	PEP-CTERM sorting domain-containing protein	A0A2K9L1M9	Tupanvirus	3.8e-05	41.3
WP_012411890.1\|6965277_6965562_-	DUF427 domain-containing protein	NA	NA	NA	NA
WP_041566469.1\|6966477_6966849_+	hypothetical protein	NA	NA	NA	NA
WP_012411892.1\|6966994_6969190_-	transglycosylase SLT domain-containing protein	A0A0S2SXL7	Bacillus_phage	1.6e-16	40.2

DBSCAN-SWA_442

6990988 : 6994525

Clostridioides_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411905.1\|6990988_6994525_+	BREX-1 system adenine-specific DNA-methyltransferase PglX	A0A2R2ZGH5	Clostridioides_phage	2.9e-12	24.1

DBSCAN-SWA_443

7012232 : 7032215

Bacillus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411921.1\|7012232_7013327_-	phosphate ABC transporter substrate-binding protein PstS	E3SII0	Synechococcus_phage	9.6e-55	39.9
WP_012411922.1\|7013445_7014843_-	cytochrome c biogenesis protein	NA	NA	NA	NA
WP_012411923.1\|7014873_7015614_-	cytochrome C biogenesis protein CcdA	NA	NA	NA	NA
WP_148220458.1\|7015798_7022908_+	AAA family ATPase	W8CYF6	Bacillus_phage	6.3e-22	29.6
WP_012411925.1\|7023328_7025914_+	adenylate/guanylate cyclase domain-containing protein	A0A2H4N7Z5	Lake_Baikal_phage	2.1e-39	38.4
WP_012411926.1\|7026186_7026678_+	hypothetical protein	NA	NA	NA	NA
WP_012411927.1\|7028069_7029173_+	response regulator	W8CYM9	Bacillus_phage	8.0e-09	30.3
WP_041565692.1\|7029551_7030505_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_012411929.1\|7030862_7032215_+	trans-splicing intein-formed DNA polymerase III subunit alpha C-terminal partner DnaE-C	Q8W6C3	Saccharomonospora_phage	5.3e-47	36.4

DBSCAN-SWA_444

7036779 : 7040495

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411933.1\|7036779_7038105_-	nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.4e-31	35.6
WP_012411934.1\|7038732_7039101_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012411935.1\|7039478_7040495_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.0e-10	24.8

DBSCAN-SWA_445

7065265 : 7067829

Streptomyces_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411955.1\|7065265_7066012_+	NUDIX hydrolase	A0A0E3JJF3	Streptomyces_phage	1.4e-12	36.8
WP_012411956.1\|7066110_7067829_+	NAD+ synthase	A0A2L0UZF5	Agrobacterium_phage	2.4e-76	33.8

DBSCAN-SWA_446

7088673 : 7094456

Microcystis_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012411977.1\|7088673_7090131_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	2.2e-171	61.2
WP_041566476.1\|7090541_7091735_+	TIR domain-containing protein	NA	NA	NA	NA
WP_012411979.1\|7091926_7092565_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_012411980.1\|7092731_7094456_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.2e-55	30.5

DBSCAN-SWA_447

7116597 : 7117017

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_167315673.1\|7116597_7117017_+	reverse transcriptase N-terminal domain-containing protein	A0A0U4J920	Pseudomonas_phage	6.5e-20	46.7

DBSCAN-SWA_448

7124375 : 7125581

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412005.1\|7124375_7125581_-	histidine kinase	A0A2K9L0Z8	Tupanvirus	1.5e-13	24.5

DBSCAN-SWA_449

7135756 : 7138927

Cafeteria_roenbergensis_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412014.1\|7135756_7138927_-	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	1.1e-23	25.3

DBSCAN-SWA_450

7144705 : 7150361

Indivirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412020.1\|7144705_7145599_-	hypothetical protein	A0A1V0SCZ1	Indivirus	5.7e-13	31.1
WP_012412021.1\|7145733_7147629_-	protein kinase	A0A1V0SDC3	Indivirus	1.6e-09	24.4
WP_012412022.1\|7147923_7148832_+	DUF3365 domain-containing protein	NA	NA	NA	NA
WP_012412023.1\|7149110_7150361_-	serine/threonine protein kinase	A0A1V0SGY7	Hokovirus	3.9e-12	26.6

DBSCAN-SWA_451

7155165 : 7155894

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412029.1\|7155165_7155894_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.6e-43	40.9

DBSCAN-SWA_452

7161579 : 7163801

Streptomyces_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412036.1\|7161579_7161990_-	8-oxo-dGTP diphosphatase MutT	A0A222YV78	Streptomyces_phage	1.5e-05	30.3
WP_012412037.1\|7162238_7162583_-	DUF760 domain-containing protein	NA	NA	NA	NA
WP_041565706.1\|7162844_7163801_-	RNA polymerase sigma factor, RpoD/SigA family	F4YCU2	Synechococcus_phage	3.1e-41	33.6

DBSCAN-SWA_453

7176600 : 7177335

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412049.1\|7176600_7177335_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	4.8e-18	31.7

DBSCAN-SWA_454

7182097 : 7182529

Streptomyces_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412054.1\|7182097_7182529_-	NUDIX hydrolase	A0A0E3JJF3	Streptomyces_phage	4.5e-08	38.9

DBSCAN-SWA_455

7188907 : 7190311

Chrysochromulina_ericina_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412061.1\|7188907_7190311_+	serine/threonine protein kinase	A0A0N9R0R5	Chrysochromulina_ericina_virus	1.2e-06	28.6

DBSCAN-SWA_456

7201811 : 7202600

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412070.1\|7201811_7202600_+	nickel pincer cofactor biosynthesis protein LarB	A0A288TYA6	Enterococcus_phage	1.2e-22	47.4

DBSCAN-SWA_457

7206451 : 7208027

Paenibacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412075.1\|7206451_7206946_+	NUDIX hydrolase	D0R7J3	Paenibacillus_phage	2.5e-10	35.3
WP_012412076.1\|7207214_7208027_+	alpha/beta hydrolase	A0A2K9KZN8	Tupanvirus	8.8e-13	42.2

DBSCAN-SWA_458

7216617 : 7219872

Leptospira_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412084.1\|7216617_7219872_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	5.2e-72	24.2

DBSCAN-SWA_459

7230959 : 7232795

Tupanvirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412098.1\|7230959_7232795_+\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.2e-105	36.3

DBSCAN-SWA_460

7243158 : 7246295

Prochlorococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412105.1\|7243158_7243794_+	transaldolase	Q58N05	Prochlorococcus_phage	4.6e-17	30.9
WP_012412106.1\|7244096_7246295_-	CHASE2 domain-containing protein	A0A1V0SGY7	Hokovirus	9.4e-09	32.3

DBSCAN-SWA_461

7260983 : 7264940

Shigella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412118.1\|7260983_7261994_-	glycosyltransferase family 2 protein	U5P087	Shigella_phage	5.7e-62	43.1
WP_148220459.1\|7262102_7262804_-	TVP38/TMEM64 family protein	NA	NA	NA	NA
WP_148220460.1\|7263230_7264940_-	iron uptake porin	Q5GQG9	Synechococcus_phage	2.6e-06	40.0

DBSCAN-SWA_462

7268167 : 7271364

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412123.1\|7268167_7268938_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	5.6e-33	38.3
WP_012412124.1\|7269377_7270325_+	D-2-hydroxyacid dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	1.3e-07	23.9
WP_012412125.1\|7270413_7271364_+	D-2-hydroxyacid dehydrogenase	A0A1B1IVB5	uncultured_Mediterranean_phage	1.9e-11	26.4

DBSCAN-SWA_463

7275677 : 7278620

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565711.1\|7275677_7278620_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	1.1e-47	30.5

DBSCAN-SWA_464

7285340 : 7291650

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566486.1\|7285340_7286153_-	response regulator	W8CYM9	Bacillus_phage	5.5e-15	35.0
WP_012412136.1\|7286922_7291650_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.4e-41	30.2

DBSCAN-SWA_465

7302428 : 7305390

Micromonas_pusilla_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412143.1\|7302428_7304315_+	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	4.7e-150	47.5
WP_012412144.1\|7304424_7305390_+	DnaJ domain-containing protein	A0A1V0SBY2	Catovirus	5.9e-16	45.2

DBSCAN-SWA_466

7318996 : 7319512

Agrobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083782448.1\|7318996_7319512_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.3e-09	32.1

DBSCAN-SWA_467

7322864 : 7323287

Pneumococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412160.1\|7322864_7323287_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.6e-16	40.7

DBSCAN-SWA_468

7326887 : 7328590

Paenibacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412166.1\|7326887_7327679_+	peptidoglycan-binding protein	D0R7H8	Paenibacillus_phage	3.2e-28	36.8
WP_012412167.1\|7328140_7328590_-	NUDIX hydrolase	S5VM37	Pseudomonas_phage	1.6e-16	42.4

DBSCAN-SWA_469

7335296 : 7336655

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412174.1\|7335296_7336655_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.4e-16	26.7

DBSCAN-SWA_470

7359477 : 7363335

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412195.1\|7359477_7359843_+	response regulator	W8CYM9	Bacillus_phage	4.5e-17	40.2
WP_012412196.1\|7359856_7360387_+	purine-binding chemotaxis protein CheW	NA	NA	NA	NA
WP_041566498.1\|7360401_7363335_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.8e-16	33.6

DBSCAN-SWA_471

7385874 : 7395830

Cronobacter_phage(66.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412214.1\|7385874_7388841_-	calcium-translocating P-type ATPase, PMCA-type	M1I547	Acanthocystis_turfacea_Chlorella_virus	8.0e-96	30.7
WP_012412215.1\|7389007_7389712_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_012412216.1\|7389713_7390322_-	tellurium resistance protein TerA	NA	NA	NA	NA
WP_012412217.1\|7390343_7390949_-	TerD family protein	K4F6Y1	Cronobacter_phage	5.4e-07	24.8
WP_052304665.1\|7392256_7392796_-	TerD family protein	NA	NA	NA	NA
WP_012412218.1\|7393361_7395830_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	2.1e-126	38.7

DBSCAN-SWA_472

7399467 : 7405542

Organic_Lake_phycodnavirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412222.1\|7399467_7400217_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	8.4e-26	40.7
WP_114083829.1\|7400311_7400536_+	hypothetical protein	NA	NA	NA	NA
WP_012412225.1\|7401004_7401277_-	DUF3143 domain-containing protein	NA	NA	NA	NA
WP_012412226.1\|7401308_7401833_-	J domain-containing protein	F2Y1Q1	Organic_Lake_phycodnavirus	7.9e-07	45.3
WP_148220461.1\|7401906_7402038_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012412228.1\|7402317_7403313_-	J domain-containing protein	A0A2L0UZR4	Agrobacterium_phage	5.7e-22	26.3
WP_012412229.1\|7403424_7405542_-	molecular chaperone DnaK	F2Y2E1	Organic_Lake_phycodnavirus	1.1e-136	48.0

DBSCAN-SWA_473

7414635 : 7415544

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412235.1\|7414635_7415544_+	ribonuclease HI	A0A1C3S7E2	Escherichia_phage	3.4e-21	38.4

DBSCAN-SWA_474

7419406 : 7429589

Mycoplasma_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412239.1\|7419406_7420300_+	ABC transporter permease	Q6GZ02	Mycoplasma_phage	1.4e-11	28.2
WP_012412240.1\|7420354_7421083_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_012412241.1\|7421100_7424706_-	hybrid sensor histidine kinase/response regulator	Q56AR1	Bacillus_thuringiensis_phage	4.6e-13	37.6
WP_012412243.1\|7425086_7428395_-	GAF domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	9.1e-16	27.8
WP_012412244.1\|7428629_7429103_-	chemotaxis protein CheW	NA	NA	NA	NA
WP_012412245.1\|7429226_7429589_-	response regulator	A0A220YL79	Alteromonas_virus	7.1e-15	35.6

DBSCAN-SWA_475

7433122 : 7433551

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412248.1\|7433122_7433551_-	DUF3110 domain-containing protein	A0A1B1IU52	uncultured_Mediterranean_phage	9.4e-06	32.6

DBSCAN-SWA_476

7442642 : 7443425

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412253.1\|7442642_7443425_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-09	26.6

DBSCAN-SWA_477

7452366 : 7457573

Deep-sea_thermophilic_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412263.1\|7452366_7454121_-	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	7.5e-09	30.1
WP_012412264.1\|7454205_7455843_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.1e-154	52.4
WP_012412265.1\|7455967_7456390_+	hypothetical protein	NA	NA	NA	NA
WP_012412266.1\|7456529_7457573_-	agmatinase family protein	A0A1V0SJM8	Klosneuvirus	5.1e-13	27.4

DBSCAN-SWA_478

7464232 : 7466893

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412271.1\|7464232_7466893_+	GAF domain-containing protein	W8CYF6	Bacillus_phage	1.7e-25	29.5

DBSCAN-SWA_479

7470801 : 7475013

Gordonia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412274.1\|7470801_7475013_+	DEAD/DEAH box helicase	A0A160DHD3	Gordonia_phage	3.4e-39	28.0

DBSCAN-SWA_480

7488705 : 7489911

Shearwaterpox_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412288.1\|7488705_7489911_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	A0A1V0S7W6	Shearwaterpox_virus	1.3e-23	38.5

DBSCAN-SWA_481

7499131 : 7501417

Moraxella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412295.1\|7499131_7501417_-	virulence-associated E family protein	A0A0R6PJB9	Moraxella_phage	6.3e-24	37.1

DBSCAN-SWA_482

7511522 : 7513250

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412304.1\|7511522_7513250_+	S8 family peptidase	A0A217EQY2	Bacillus_phage	3.2e-12	36.4

DBSCAN-SWA_483

7517007 : 7519347

Microcystis_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412308.1\|7517007_7519347_+	peptidoglycan DD-metalloendopeptidase family protein	A0A075BS18	Microcystis_phage	4.8e-27	54.9

DBSCAN-SWA_484

7525724 : 7527366

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412315.1\|7525724_7526738_-	DnaJ domain-containing protein	A0A1V0SF83	Hokovirus	2.6e-14	25.7
WP_012412316.1\|7526856_7527366_-	AAA family ATPase	U5J9W1	Bacillus_phage	4.4e-10	32.2

DBSCAN-SWA_485

7537788 : 7538706

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412322.1\|7537788_7538706_-	histone deacetylase	A0A2K9KZC4	Tupanvirus	5.3e-14	30.5

DBSCAN-SWA_486

7543071 : 7549922

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412327.1\|7543071_7543965_+	alpha/beta fold hydrolase	A0A0Y0ADV3	Mycobacterium_phage	3.7e-12	31.4
WP_012412328.1\|7544112_7545171_+	serine/threonine protein kinase	A0A2P1EMR8	Moumouvirus	2.2e-11	33.3
WP_167315550.1\|7545288_7545453_+	hypothetical protein	NA	NA	NA	NA
WP_012412329.1\|7545601_7546228_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_167315682.1\|7546408_7546597_-	hypothetical protein	NA	NA	NA	NA
WP_167315683.1\|7546691_7546853_-	hypothetical protein	NA	NA	NA	NA
WP_012412330.1\|7547033_7549922_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.3e-289	53.4

DBSCAN-SWA_487

7561261 : 7562353

Cronobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412346.1\|7561261_7562353_+	nucleotidyltransferase domain-containing protein	K4FB25	Cronobacter_phage	2.9e-35	29.8

DBSCAN-SWA_488

7572739 : 7574992

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412354.1\|7572739_7574992_-	GAF domain-containing protein	W8CYF6	Bacillus_phage	7.6e-22	29.1

DBSCAN-SWA_489

7583624 : 7585793

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412359.1\|7583624_7585793_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	3.0e-39	26.8

DBSCAN-SWA_490

7593186 : 7595073

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412366.1\|7593186_7595073_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.6e-10	29.5

DBSCAN-SWA_491

7603694 : 7605440

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148220465.1\|7603694_7605440_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	6.5e-13	24.0

DBSCAN-SWA_492

7614762 : 7617291

Sphingomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412381.1\|7614762_7617291_-	NTP transferase domain-containing protein	H9NC64	Sphingomonas_phage	4.4e-10	29.0

DBSCAN-SWA_493

7621969 : 7625450

Organic_Lake_phycodnavirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412385.1\|7621969_7622734_+	ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	8.0e-16	28.3
WP_012412386.1\|7622850_7623327_+	hypothetical protein	NA	NA	NA	NA
WP_012412387.1\|7623578_7625450_+	iron uptake porin	Q5GQG9	Synechococcus_phage	8.3e-06	41.8

DBSCAN-SWA_494

7630525 : 7640151

Hokovirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412392.1\|7630525_7632886_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	2.2e-27	27.5
WP_041565749.1\|7634075_7634534_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	4.1e-15	34.0
WP_052304669.1\|7634645_7635761_-	acyltransferase	B5WZU0	Pseudomonas_phage	6.9e-16	29.5
WP_012412395.1\|7636027_7637152_-	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_012412396.1\|7637292_7640151_-	cation-translocating P-type ATPase	A0A1J0FA34	Only_Syngen_Nebraska_virus	1.5e-83	31.6

DBSCAN-SWA_495

7646546 : 7646834

Burkholderia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041565752.1\|7646546_7646834_+	BrnT family toxin	K4NX81	Burkholderia_phage	1.0e-11	43.3

DBSCAN-SWA_496

7659688 : 7661089

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412415.1\|7659688_7661089_+	serine/threonine protein kinase	A0A1B1IUU3	uncultured_Mediterranean_phage	4.9e-11	30.6

DBSCAN-SWA_497

7669564 : 7672501

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412423.1\|7669564_7672501_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	3.4e-62	29.9

DBSCAN-SWA_498

7676498 : 7679845

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412429.1\|7676498_7677731_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	6.4e-15	29.5
WP_012412430.1\|7677799_7678474_-	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	6.6e-06	32.5
WP_012412431.1\|7678702_7679845_-	7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofH	A9ZMK9	Mamastrovirus	5.4e-16	32.3

DBSCAN-SWA_499

7695985 : 7696597

Agrobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412443.1\|7695985_7696597_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	6.3e-56	58.8

DBSCAN-SWA_500

7704244 : 7706719

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083782451.1\|7704244_7704616_+	O-methyltransferase	W8CYN0	Bacillus_phage	1.2e-22	72.2
WP_012412451.1\|7704914_7706003_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.2e-28	32.6
WP_012412452.1\|7706008_7706719_-	response regulator transcription factor	W8CYM9	Bacillus_phage	9.7e-40	41.3

DBSCAN-SWA_501

7710732 : 7711554

Diadromus_pulchellus_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412456.1\|7710732_7711554_-	acyl-CoA desaturase	F2NZ38	Diadromus_pulchellus_ascovirus	3.2e-26	35.5

DBSCAN-SWA_502

7717188 : 7718286

Yellowstone_lake_phycodnavirus(100.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412463.1\|7717188_7718286_-\|protease	DJ-1/PfpI/YhbO family deglycase/protease	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	1.4e-16	31.2

DBSCAN-SWA_503

7729739 : 7730063

Streptomyces_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412473.1\|7729739_7730063_+	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.7e-21	46.6

DBSCAN-SWA_504

7741741 : 7747452

Bacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566526.1\|7741741_7742668_-	nucleoside triphosphate pyrophosphohydrolase family protein	A0A0U4IBD0	Bacillus_phage	1.9e-11	39.6
WP_012412487.1\|7742776_7743274_-	DUF1643 domain-containing protein	A0A142F2K6	Mycobacterium_phage	4.4e-23	43.2
WP_041565758.1\|7743319_7744507_-	ATP-binding protein	A0A249XNQ1	Brevibacterium_phage	9.5e-32	29.2
WP_012412489.1\|7744680_7745361_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012412490.1\|7745478_7747452_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	3.3e-98	41.6

DBSCAN-SWA_505

7755288 : 7760128

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412495.1\|7755288_7756011_+	DUF475 domain-containing protein	A0A068EP98	Bacillus_phage	2.7e-21	34.1
WP_012412496.1\|7756086_7756536_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.4e-28	45.0
WP_012412497.1\|7756753_7758772_+	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_012412498.1\|7758958_7760128_-	NDP-sugar synthase	A0A127AW70	Bacillus_phage	8.2e-12	29.4

DBSCAN-SWA_506

7777656 : 7777902

Moraxella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566529.1\|7777656_7777902_+	HNH endonuclease	A0A0R6PDM8	Moraxella_phage	1.7e-07	49.1

DBSCAN-SWA_507

7782795 : 7785530

Paramecium_bursaria_Chlorella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412520.1\|7782795_7783932_+	serine/threonine protein kinase	M1HTI1	Paramecium_bursaria_Chlorella_virus	9.1e-16	26.9
WP_012412521.1\|7784099_7785530_-	NADP-dependent phosphogluconate dehydrogenase	A0A222YX62	Synechococcus_phage	3.3e-31	31.7

DBSCAN-SWA_508

7788689 : 7789685

Halovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412524.1\|7788689_7789685_-	DNA cytosine methyltransferase	R4TMW4	Halovirus	1.3e-26	29.7

DBSCAN-SWA_509

7794450 : 7795995

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412528.1\|7794450_7795995_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	5.3e-83	55.0

DBSCAN-SWA_510

7805478 : 7806204

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412533.1\|7805478_7806204_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.3e-36	38.5

DBSCAN-SWA_511

7810853 : 7814156

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412538.1\|7810853_7811588_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.1e-29	38.8
WP_012412539.1\|7811843_7813394_-	cytochrome P450	I6XNL0	Cotesia_sesamiae_Mombasa_bracovirus	9.5e-16	23.1
WP_041566531.1\|7813577_7814156_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	1.1e-09	30.2

DBSCAN-SWA_512

7824660 : 7827765

Human_respiratory_syncytial_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412551.1\|7824660_7827765_+	thioester reductase domain-containing protein	V9VFW4	Human_respiratory_syncytial_virus	4.9e-72	34.6

DBSCAN-SWA_513

7832246 : 7837919

Pandoravirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566535.1\|7832246_7834016_+	serine/threonine protein kinase	A0A0B5JBJ2	Pandoravirus	7.1e-07	29.0
WP_012412557.1\|7834203_7835499_-	hybrid sensor histidine kinase/response regulator	W8CYM9	Bacillus_phage	1.6e-19	35.8
WP_012412558.1\|7835495_7837919_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.1e-45	29.5

DBSCAN-SWA_514

7841518 : 7844155

Hokovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412561.1\|7841518_7844155_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	3.2e-27	26.5

DBSCAN-SWA_515

7848016 : 7851328

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412566.1\|7848016_7851328_+	DEAD/DEAH box helicase family protein	A0A1B1IUI1	uncultured_Mediterranean_phage	1.3e-14	21.2

DBSCAN-SWA_516

7858014 : 7879081

Bacillus_virus(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412573.1\|7858014_7860576_+	GAF domain-containing protein	A0A1V0SGX0	Hokovirus	9.2e-16	27.8
WP_193372288.1\|7860593_7861019_+	response regulator	NA	NA	NA	NA
WP_012412575.1\|7861024_7863313_+	response regulator	Q6XLV6	Feldmannia_irregularis_virus	2.2e-13	23.8
WP_041566538.1\|7863472_7864384_+	hypothetical protein	NA	NA	NA	NA
WP_167315689.1\|7864389_7864539_+	hypothetical protein	NA	NA	NA	NA
WP_012412577.1\|7864578_7865670_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_012412578.1\|7865715_7865913_-	hypothetical protein	NA	NA	NA	NA
WP_012412579.1\|7866103_7866340_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.1e-16	56.5
WP_041565772.1\|7866401_7867103_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_148220388.1\|7867423_7868686_-	protein kinase	A0A1V0SDQ4	Indivirus	1.6e-08	26.2
WP_012412582.1\|7868819_7869524_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_012412583.1\|7869589_7870498_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_012412584.1\|7870695_7872633_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	1.9e-138	43.2
WP_167315690.1\|7872771_7872936_-	hypothetical protein	NA	NA	NA	NA
WP_012412585.1\|7874358_7875528_+	RNA polymerase sigma factor RpoD	M4SMP8	Cyanophage	3.0e-38	35.7
WP_012412586.1\|7875645_7875831_-	high light inducible protein	NA	NA	NA	NA
WP_012412587.1\|7876189_7876588_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012412588.1\|7876597_7879081_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.0e-87	39.5

DBSCAN-SWA_517

7885588 : 7886251

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_193372289.1\|7885588_7886251_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.4e-34	40.9

DBSCAN-SWA_518

7893560 : 7895239

Prochlorococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412603.1\|7893560_7894043_+	DUF4385 domain-containing protein	A0A0K0KVI6	Prochlorococcus_phage	1.2e-33	57.5
WP_012412604.1\|7894705_7895239_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	5.6e-16	35.6

DBSCAN-SWA_519

7901248 : 7905627

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412609.1\|7901248_7902802_-	cation:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	1.3e-17	32.1
WP_041565775.1\|7902966_7903968_-	DUF389 domain-containing protein	NA	NA	NA	NA
WP_012412611.1\|7904079_7905627_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	1.1e-16	32.6

DBSCAN-SWA_520

7921301 : 7923251

Hepacivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412622.1\|7921301_7923251_+	long-chain fatty acid--CoA ligase	Q75ZG1	Hepacivirus	2.3e-30	25.7

DBSCAN-SWA_521

7932602 : 7936736

Caulobacter_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412628.1\|7932602_7934750_-\|tRNA	intein-containing tRNA-splicing ligase RtcB	A0A1V0EEW8	Caulobacter_phage	5.2e-12	75.5
WP_012412629.1\|7935123_7936011_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012412630.1\|7936007_7936736_+	HAD family phosphatase	A7J6N1	Paramecium_bursaria_Chlorella_virus	2.8e-10	24.4

DBSCAN-SWA_522

7941662 : 7942967

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412634.1\|7941662_7942967_-	O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase	A0A0B5JD48	Pandoravirus	3.3e-09	25.1

DBSCAN-SWA_523

7953728 : 7954490

Clostridium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412643.1\|7953728_7954490_+	N-acetylmuramoyl-L-alanine amidase	A0A2D0WXW5	Clostridium_phage	2.7e-11	29.9

DBSCAN-SWA_524

7965199 : 7965694

Aeromonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412652.1\|7965199_7965694_-	TM2 domain-containing protein	A0A240F358	Aeromonas_phage	8.5e-11	47.1

DBSCAN-SWA_525

7979990 : 7981448

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412662.1\|7979990_7981448_-	2-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.6e-23	29.9

DBSCAN-SWA_526

7986449 : 7990419

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412667.1\|7986449_7987757_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.4e-84	43.1
WP_012412668.1\|7988133_7990419_-	response regulator	W8CYF6	Bacillus_phage	1.2e-27	34.5

DBSCAN-SWA_527

8001743 : 8004701

Megavirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412677.1\|8001743_8003582_-	protein kinase	G5CRS8	Megavirus	6.6e-08	23.9
WP_012412678.1\|8003813_8004701_+	deoxyribodipyrimidine photo-lyase	A0A2H4UV63	Bodo_saltans_virus	1.5e-18	30.9

DBSCAN-SWA_528

8010298 : 8011513

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412685.1\|8010298_8010712_+	arsenate reductase, glutathione/glutaredoxin type	A0A2H4J437	uncultured_Caudovirales_phage	3.9e-09	33.6
WP_012412686.1\|8010844_8011513_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	7.6e-79	68.9

DBSCAN-SWA_529

8014645 : 8018638

Bacillus_thuringiensis_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412690.1\|8014645_8015248_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	3.8e-37	41.8
WP_041565790.1\|8015737_8017345_-	bifunctional pantoate--beta-alanine ligase/(d)CMP kinase	NA	NA	NA	NA
WP_012412692.1\|8017531_8018638_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	1.1e-18	50.5

DBSCAN-SWA_530

8033112 : 8035569

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412701.1\|8033112_8035569_-	after-VIT domain-containing protein	A0A2K9L4P5	Tupanvirus	3.6e-25	22.6

DBSCAN-SWA_531

8044046 : 8055940

Aureococcus_anophage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412708.1\|8044046_8045495_-	Rieske 2Fe-2S domain-containing protein	A0A076FFT9	Aureococcus_anophage	7.5e-31	27.4
WP_012412709.1\|8046409_8047108_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	4.6e-18	36.5
WP_012412710.1\|8047217_8049440_-	dynamin family protein	E3T4P7	Cafeteria_roenbergensis_virus	5.8e-06	46.7
WP_012412711.1\|8049964_8052046_-	dynamin	A0A1V0S9N3	Catovirus	5.4e-06	27.1
WP_012412712.1\|8052062_8052389_-	DUF3040 domain-containing protein	NA	NA	NA	NA
WP_041565793.1\|8052577_8052793_-	hypothetical protein	NA	NA	NA	NA
WP_193372251.1\|8054014_8054317_-	hypothetical protein	NA	NA	NA	NA
WP_012412714.1\|8054965_8055940_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	7.8e-48	39.0

DBSCAN-SWA_532

8073623 : 8074259

Bacteriophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412725.1\|8073623_8074259_+	dTMP kinase	A0A1L2BX49	Bacteriophage	5.1e-40	47.4

DBSCAN-SWA_533

8087237 : 8088203

Indivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412734.1\|8087237_8088203_+	aldo/keto reductase	A0A1V0SDE7	Indivirus	9.5e-06	24.3

DBSCAN-SWA_534

8095550 : 8102197

Bodo_saltans_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412741.1\|8095550_8101004_-	AAA family ATPase	A0A2H4UW49	Bodo_saltans_virus	8.8e-16	31.4
WP_012412742.1\|8101438_8102197_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.6e-19	32.7

DBSCAN-SWA_535

8112674 : 8205313

Tupanvirus(21.43%)

transposase,protease,integrase

attL 8184794:8184853|attR 8216138:8219106

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412751.1\|8112674_8113850_-\|transposase	transposase	G9CU70	Helicobacter_phage	6.7e-70	41.8
WP_041565799.1\|8113896_8114298_+\|transposase	IS200/IS605 family transposase	A0A0H3UZM0	Geobacillus_virus	6.9e-19	39.7
WP_012412752.1\|8114353_8115166_-	alpha/beta hydrolase	A0A1D8ET90	Mycobacterium_phage	1.1e-07	24.3
WP_012412753.1\|8115220_8115613_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_012412754.1\|8115638_8116202_-\|protease	retroviral-like aspartic protease family protein	NA	NA	NA	NA
WP_012412755.1\|8116421_8117489_-	acyltransferase family protein	NA	NA	NA	NA
WP_012412756.1\|8117868_8118642_-	nucleoside phosphorylase	NA	NA	NA	NA
WP_012412757.1\|8118773_8119901_-	class I SAM-dependent methyltransferase	A0A2I2L5L3	Orpheovirus	1.5e-23	27.5
WP_012412758.1\|8120260_8120857_-	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	3.6e-48	50.8
WP_012412760.1\|8121499_8122930_-	hypothetical protein	NA	NA	NA	NA
WP_012412762.1\|8124609_8125143_-	hypothetical protein	NA	NA	NA	NA
WP_012412763.1\|8125208_8125412_-	ChaB family protein	M1J491	Spodoptera_littoralis_nuclear_polyhedrosis_virus	1.2e-08	56.7
WP_012412764.1\|8125713_8126157_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_041565802.1\|8128870_8129062_+	hypothetical protein	NA	NA	NA	NA
WP_041565803.1\|8129208_8129760_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012412767.1\|8129864_8130437_+	HdeD family acid-resistance protein	NA	NA	NA	NA
WP_012412768.1\|8130694_8132839_+	family 10 glycosylhydrolase	NA	NA	NA	NA
WP_012412769.1\|8133176_8134487_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012412770.1\|8134639_8135380_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	6.6e-23	30.3
WP_012412771.1\|8135780_8136494_+	rubrerythrin family protein	NA	NA	NA	NA
WP_012412772.1\|8136855_8138883_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_012412773.1\|8139115_8139550_+	NfeD family protein	NA	NA	NA	NA
WP_012412774.1\|8139649_8140657_+	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_012412775.1\|8140758_8141163_-	transcriptional repressor	NA	NA	NA	NA
WP_012412776.1\|8141306_8141585_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3IAZ0	Synechococcus_phage	1.7e-08	35.7
WP_012412777.1\|8141685_8142360_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_012412778.1\|8142489_8144073_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012412779.1\|8144165_8147174_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	1.2e-51	30.6
WP_012412780.1\|8147981_8150324_-	VCBS repeat-containing protein	NA	NA	NA	NA
WP_012412781.1\|8150737_8155027_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	3.6e-57	28.7
WP_012412782.1\|8155023_8158305_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.5e-74	31.8
WP_148220470.1\|8158378_8159515_-	acyltransferase	G9L6E5	Escherichia_phage	9.1e-16	25.9
WP_012412784.1\|8160055_8164972_-	type I polyketide synthase	D0R7J2	Paenibacillus_phage	3.5e-48	39.2
WP_012412785.1\|8164975_8167006_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.4e-75	32.7
WP_012412786.1\|8168044_8170717_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_041566567.1\|8171121_8174235_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_012412788.1\|8177912_8182166_-	phytase	NA	NA	NA	NA
WP_012412789.1\|8182953_8183730_-	hypothetical protein	NA	NA	NA	NA
WP_012412790.1\|8184141_8184312_-	ssl1498 family light-harvesting-like protein	NA	NA	NA	NA
8184794:8184853	attL	NA	NA	NA	NA
WP_012412791.1\|8184878_8186465_-	TniQ family protein	NA	NA	NA	NA
WP_012412792.1\|8186454_8187594_-	ATP-binding protein	NA	NA	NA	NA
WP_012412793.1\|8187587_8190197_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_012412793.1\|8190742_8193352_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_012412792.1\|8193345_8194485_+	ATP-binding protein	NA	NA	NA	NA
WP_012412791.1\|8194474_8196061_+	TniQ family protein	NA	NA	NA	NA
WP_012412794.1\|8196281_8197328_-	DUF1611 domain-containing protein	NA	NA	NA	NA
WP_012412795.1\|8197311_8198364_-	dipeptide epimerase	NA	NA	NA	NA
WP_012412797.1\|8199071_8200310_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_012412798.1\|8200355_8201279_-	nucleoside hydrolase	NA	NA	NA	NA
WP_012412799.1\|8201295_8201727_+	nucleoside deaminase	NA	NA	NA	NA
WP_012412800.1\|8201932_8203057_-	metallophosphoesterase	NA	NA	NA	NA
WP_012412801.1\|8203513_8204386_+	S-methyl-5'-thioadenosine phosphorylase	NA	NA	NA	NA
WP_012412802.1\|8204509_8205313_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
8216138:8219106	attR	NA	NA	NA	NA

DBSCAN-SWA_536

8225323 : 8227222

Sphenicid_alphaherpesvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012412814.1\|8225323_8227222_-	serine/threonine protein kinase	A0A1R3T5J2	Sphenicid_alphaherpesvirus	1.5e-07	29.1

DBSCAN-SWA_537

8232472 : 8233003

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041566568.1\|8232472_8233003_-	peptide deformylase	A0A1D8KUY1	Synechococcus_phage	5.2e-14	33.8

Anti-CRISPR protein detection

Acr_ID: NC_010628.1|WP_052304625.1|4032148_4032334_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_010628.1|WP_052304625.1|4032148_4032334_+|hypothetical-protein

4032148_4032334_+

61 aa aa

3872804-4038722

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_010631_1	Orphan	1.1\|163441\|29\|NC_010631\|CRISPRCasFinder	163441-163469	29	4036315-4036287	0
NC_010631_2	Orphan	2.1\|179717\|29\|NC_010631\|CRISPRCasFinder	179717-179745	29	4036315-4036287	0
NC_010631_1	Orphan	1.2\|163494\|31\|NC_010631\|CRISPRCasFinder	163494-163524	31	4036262-4036232	1
NC_010631_1	Orphan	1.4\|163501\|31\|NC_010631\|PILER-CR	163501-163531	31	4036262-4036232	1
NC_010631_2	Orphan	2.2\|179770\|31\|NC_010631\|CRISPRCasFinder	179770-179800	31	4036262-4036232	1
NC_010631_2	Orphan	2.4\|179773\|32\|NC_010631\|PILER-CR	179773-179804	32	4036263-4036232	1

1. spacer 1.1|163441|29|NC_010631|CRISPRCasFinder matches to NC_010628 position: 4036315-4036287, mismatch: 0

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttagggggaaaatttcacttagtccgc	Protospacer
*****************************

2. spacer 2.1|179717|29|NC_010631|CRISPRCasFinder matches to NC_010628 position: 4036315-4036287, mismatch: 0

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttagggggaaaatttcacttagtccgc	Protospacer
*****************************

3. spacer 1.2|163494|31|NC_010631|CRISPRCasFinder matches to NC_010628 position: 4036262-4036232, mismatch: 1

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaagttcctcaaacccttattattacgtt	Protospacer
****.**************************

4. spacer 1.4|163501|31|NC_010631|PILER-CR matches to NC_010628 position: 4036262-4036232, mismatch: 1

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaagttcctcaaacccttattattacgtt	Protospacer
****.**************************

5. spacer 2.2|179770|31|NC_010631|CRISPRCasFinder matches to NC_010628 position: 4036262-4036232, mismatch: 1

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaagttcctcaaacccttattattacgtt	Protospacer
****.**************************

6. spacer 2.4|179773|32|NC_010631|PILER-CR matches to NC_010628 position: 4036263-4036232, mismatch: 1

acaaaggttcctcaaacccttattattacgtt	CRISPR spacer
acaaaagttcctcaaacccttattattacgtt	Protospacer
*****.**************************

3. NC_010631

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_010631_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010631_1

163417-163549

Orphan

A:N

Consensus_repeat	Method
GAAAAAATTTCATTTAGTCTGCAA	CRISPRCasFinder
TTGCAGACTAAATGAAATTTTTTC	PILER-CR

2 spacers

The CRISPR arrays of NC_010631_1

>merge|NC_010631|1|163417-163549|CRISPRCasFinder,PILER-CR
TGGAAAATTTCATTTAGTCTGCGAATTTAGGGGGAAAATTTCACTTAGTCCGCGAAAAAATTTCATTTAGTCTGCAACAAAGGTTCCTCAAACCCTTATTATTACGTTGAAAAAATTTCATTTAGTCTGCAAA

>NC_010631|1|1|163417-163548|CRISPRCasFinder
TGGAAAATTTCATTTAGTCTGCGA	ATTTAGGGGGAAAATTTCACTTAGTCCGC
GAAAAAATTTCATTTAGTCTGCAA	CAAAGGTTCCTCAAACCCTTATTATTACGTT
GAAAAAATTTCATTTAGTCTGCAA

>NC_010631|1|1|163420-163549|PILER-CR
AAAATTTCATTTAGTCTGCGAATTT	AGGGGGAAAATTTCACTTAGTCCGCGAAAAA
ATTTCATTTAGTCTGCAACAAAGGT	TCCTCAAACCCTTATTATTACGTTGAAAAAA
TTTCATTTAGTCTGCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010631.1\|WP_012413010.1\|162118_162532_-\|XisH-family-protein	unknown	unknown	gnl\|CDD\|370136
NC_010631.1\|WP_012412791.1\|177758_179345_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_010631.1\|WP_041566579.1\|161337_161652_-\|hypothetical-protein	unknown	unknown	unknown
NC_010631.1\|WP_012413005.1\|159090_159558_-\|hypothetical-protein	unknown	unknown	unknown
NC_010631.1\|WP_012413011.1\|162594_163050_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NC_010631.1\|WP_012413015.1\|168384_169722_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|379756
NC_010631.1\|WP_012413014.1\|166704_168381_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NC_010631.1\|WP_012413004.1\|158407_159088_-\|hypothetical-protein	unknown	unknown	unknown
NC_010631.1\|WP_041566580.1\|170655_171018_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274609
NC_010631.1\|WP_012413009.1\|161795_162131_-\|XisI-protein	unknown	unknown	gnl\|CDD\|341357
NC_010631.1\|WP_012413003.1\|154487_158066_+\|CHAT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378942
NC_010631.1\|WP_012413006.1\|159761_160184_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NC_010631.1\|WP_012413017.1\|180215_180428_-\|hypothetical-protein	unknown	unknown	unknown
NC_010631.1\|WP_012413012.1\|163649_164471_+\|heteromeric-transposase-endonuclease-subunit-TnsA	unknown	unknown	gnl\|CDD\|378036
NC_010631.1\|WP_012413013.1\|164492_166721_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_010631.1\|WP_012413002.1\|151681_154432_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|378942
NC_010631.1\|WP_012413016.1\|174026_176636_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_010631.1\|WP_012412792.1\|176629_177769_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NC_010631.1\|WP_012413007.1\|160269_161277_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|274043
NC_010631.1\|WP_167315708.1\|169976_170684_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670

Protein	Function_ID	Function_description	E-value
NC_010631.1\|WP_012413010.1\|162118_162532_-\|XisH-family-protein	gnl\|CDD\|370136	pfam08814, XisH, XisH protein. The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required.	2.80613e-79
NC_010631.1\|WP_012412791.1\|177758_179345_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	2.63159e-11
NC_010631.1\|WP_012413015.1\|168384_169722_+\|TniQ-family-protein	gnl\|CDD\|379756	pfam15978, TnsD, Tn7-like transposition protein D. TnsD is a family of putative Tn7-like transposition proteins type D.	1.02974e-49
NC_010631.1\|WP_012413012.1\|163649_164471_+\|heteromeric-transposase-endonuclease-subunit-TnsA	gnl\|CDD\|378036	pfam08721, Tn7_Tnp_TnsA_C, TnsA endonuclease C terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The C terminal domain of TnsA binds DNA.	1.87398e-22
NC_010631.1\|WP_012413011.1\|162594_163050_-\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	1.82186e-37
NC_010631.1\|WP_012413014.1\|166704_168381_+\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	1.09941e-20
NC_010631.1\|WP_041566580.1\|170655_171018_-\|hypothetical-protein	gnl\|CDD\|274609	TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular processes, Chemotaxis and motility].	0.00207493
NC_010631.1\|WP_012413009.1\|161795_162131_-\|XisI-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	9.00474e-58
NC_010631.1\|WP_012413003.1\|154487_158066_+\|CHAT-domain-containing-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	4.76297e-75
NC_010631.1\|WP_012413006.1\|159761_160184_-\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	3.85906e-51
NC_010631.1\|WP_012413013.1\|164492_166721_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.16988e-07
NC_010631.1\|WP_012413002.1\|151681_154432_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	6.75912e-78
NC_010631.1\|WP_012413016.1\|174026_176636_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	6.58192e-08
NC_010631.1\|WP_012412792.1\|176629_177769_+\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	6.64405e-08
NC_010631.1\|WP_012413007.1\|160269_161277_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|274043	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD. The phage integrase family describes a number of recombinases with tyrosine active sites that transiently bind covalently to DNA. Many are associated with mobile DNA elements, including phage, transposons, and phase variation loci. This model represents XerD, one of two closely related chromosomal proteins along with XerC (TIGR02224). XerC and XerD are site-specific recombinases which help resolve chromosome dimers to monomers for cell division after DNA replication. In species with a large chromosome and with homologs of XerD on other replicons, the chomosomal copy was preferred for building this model. This model does not detect all XerD, as some apparent XerD examples score below the trusted and noise cutoff scores. XerC and XerD interact with cell division protein FtsK. [DNA metabolism, DNA replication, recombination, and repair].	8.51372e-32
NC_010631.1\|WP_167315708.1\|169976_170684_-\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	1.42877e-07

>NC_010631.1|WP_012413011.1|162594_163050_-|four-helix-bundle-protein
MDKNVGIADRSKAFAIRIIKACSFLDEKPGICRTLSKQLLRSGTSVGANIRESRSAQSDKDFLHKMEIALKEARETEYWLEILIESEVVEKAKFSSLLQEADEMVKILVASTRKIKERLNGNKLRSRKIVVARDKHSELTTTVNSKAIPPI
>NC_010631.1|WP_012413010.1|162118_162532_-|XisH-family-protein
MARDLFHNIVRSALEKEGWVITDDPLNIRCGGVDVQIDLGAERLLAAEKAGEKIAVEIKNFVSASKISEFHMALGQFINYRTALRVEEPNRNLYLAVPLVTYNDFFNLSFIQTVVNENKLKLIIYNVETEAIEQWIN
>NC_010631.1|WP_012413009.1|161795_162131_-|XisI-protein
MDKLNEYRTKVRQLLTKHLQYKPSYGDVEVEQIFDEEHDHYQIISVGWNNQHRIYGPIMHLDIKNNKIWIQQNTTEADIALELMEMGIDKQDIVIGFHTPKMRQLSGFAVE
>NC_010631.1|WP_041566579.1|161337_161652_-|hypothetical-protein
MLYYKLVGHTPVAVNSLSEWQNYLHSVQDSLKHLVAETIVGDAKVSTSSSGFDLTFGDPPLLFETMVLGGPHHGRMQRYSTWEQALTGHDRTVVEVMTTSPPDE
>NC_010631.1|WP_012413007.1|160269_161277_-|tyrosine-type-recombinase/integrase
MNYSADSLPKIKLIPLDREALHFTQLGETRRPPTDIRWVKVLEFLRSNNLAPNSRKLYERELKRFLAWSELHYHELRPRHLALYKEYLRDEIRTDAGKPLSKSSINAGIAALKSFFKWMCYTYPEIISTNPTLGIKLEKVPLPPAQSLTPEEMEQVWSALELLGETKQRDTALVHILSHGLRAGEVVQLNVGSFDGKLLFLPDTKTNEPRLVPLKKESREVLAQYLLTRQQSGEVLTSLSPLMISHHASYKGERLSYHGIYFAVEKIGEIALIEDLHPHSFRHTYATDLLLLGVDPSHARKLTGHQSEKAFRRYTLRSEQEAAIAAYYRAIGEEE
>NC_010631.1|WP_012413006.1|159761_160184_-|four-helix-bundle-protein
MNDKPSIQSYQDLKVWQEAMNLAEECYRVTKQFPKEETYGMISQIRRASVSIPANIAEGYGRRTRGEYIQFLYIAQGSLKELETHLLLSIRVALAVAEVMKKGVGGRVLGVGKTALVGAWNPHQCNRPERRGLCPTGCWG
>NC_010631.1|WP_012413005.1|159090_159558_-|hypothetical-protein
MPKPLDPKCQLCAKLPTAKAKVLHGTNGDGCWNPKVCHNRRSFYRRRTDDNSAQLDAITVEPPAKYVAVLYLYKEPGDKPLHALGAELWLGQQPICRLEPIHCFGLTAGKIRTYTDQVLQAFASQYAISLYQYKDMFEISPTHCPVRPCPLNPDL
>NC_010631.1|WP_012413004.1|158407_159088_-|hypothetical-protein
MATYRQLTIWDVLDEMSVAPPTSTLAPVWKCLDTELENLSTEAQLSTAAEAFYQIADILKSRAESILEDVRAQNDTDGPIISTDIFAGLVRTIMHLDLDDLIEPEIPQTFRSHGPHQFSYPTELGDSVAAPVEKANVLAMLDEVTTLEDVRNLASDEDVEKWQSAIANYLINVKDEISLVKLQRVLQMPMVEVWLGLLLGGFTLEQRGDFYHNHNVWVKSSPSYHQ
>NC_010631.1|WP_012413003.1|154487_158066_+|CHAT-domain-containing-protein
MIQLHLHRLKLILLLCLSLSSETVSANPKPIPGLLTPPLQLRTQTNTSDTNRAAAEKAEQEAGQLGKQKAPLLTKIIPKWEEALKYWRLAGDRQKETQTLDRISKLYLARGEFPKALEYAQKALPICQALGDRDCEGAVTGSLSLSYQNMGEYEKAIDMQLQLPFFFPKTADLPPAVFSSVGQIYDNLGEKQKALDYYNKALDFWKEKGDVVKQAERLQNIAFFHVFLGEIEKSIEIIKQANNLDPEFKRNESNYNAFYVSLRSTSCSDKLASIKKPPKIEKLDNSSNQSASTNSAAATKNNIESWKQKVQQYRTQELLRGEAGFLELLGGLEYKRIGEYKKALEVYQQALELRQIMGGKPREAETLTNIADILNRQGKKQEAINVLNQALDIQRQIKARPAQADTLLTLGDVYLSLGAYPESLNVYNQALSTSKIIGNRSREIDALRRIGDVYRKSQTYPQALSYYQQALSISKNTGNCNQESTLLSSITQNHFAAGDYQQAINFGNQALALSRNLEIDEYKLALEARTLDIFAKVEIKQGNYSKSLESSQKARKLGRESGFREIEARAIAATAEAYEALKQPEKAIQAYQEQLALYAQMGLSTEQAQSYYNIAKLQRQNNQLPESLSEIDKAIEIIENIRKEVVSEDLKTSFFATVQDYYQLKINILMELHKKDPSKGYNALALDTSERSRARSLLELLTEAHADIRKGVDPKLLEEELSVQQQIDARRKIRIELLSSKKNSEQVDELNKEIEELSEKYQQILASIRAKSPVYAAITQPHPLTLAEIQSSVLDDNTILLQYSLGKDHSYLWLVTKTGMKSYELPKGEDIETAAKKFYQNIKGGRELYSRGGITVQPGINAGNPEKVATKLSQMLLQPVAQELGNKRLLIVGDGILQYIPFAALPNPTQTKLQPLLVEHEIVNAPSASTISVVRNETKNRNVAVKKLAVLADPVFSKDDDRLKPDVTQSVQNRGKNPNFTELNTLAMRRSSCDSNFSFPRLEGTHTEATNILSLVPKSLSKSAFDFDVNRTTVTNPEMSQYQIVHFATHGFFDTNNPKCSSVVLSLVDSKGNAEDGFLQLQDIFNLNLPAELVVLSACETGLGEQVKGEGLVGLTRGFMYAGSPRVAVSLWSVDDQGTAELMTKFYTNMLKDNLPSVAALRAAQLEMWQSPNPNYSQTNVWAAFTLQGEWR
>NC_010631.1|WP_012413002.1|151681_154432_+|tetratricopeptide-repeat-protein
MRDRKLSLTALITLILTVSLPITNLPPLFQASQVLAQTPADRKAEADRLLNQGFEQLQTSQFTAALESGQQALIIYREIKDRQGEGRTLIFQGAAHLSLGDKARAITYLEQGLAIAKQINNQDLEKNAQVILQLAQDQNNPRKTEADRLLEQGIKQGTTGQFEAALQSLQQSLIIYRQIKDRQGEGNALGNLGLAYHFLGDYSKAIVYHQEILAIAREIKDRQGEGNALGNLGIAYQALGDYSKAIDYHQQHLVIAREIKDRRGEGNALGNLGNAYHFLGDYPKAIVYHQEILAIAREIKDRQGEGNALGNLGGIYSYLKDYRQAIDYHQQHLVIAREIKDRQGEGKALDNLGFAYSRLGDYKKAINYCQQSLAIAREIKDRRGEGNALGSLALTYENLGDYPKAIDYHQQSLAIAREIKDRFGEGQSLNNLGLAYQKSGNLTEAEKTLRPGIEVWESLRGTLGKNDSYKVSIFEEQARTYRILQEVLIAQNKTNDALEISERGRSRAFVELLTSRLSSKNIGQIPEKPTLLLLQQIAKQENATLIEYSIIYNDVKIQGKQETHESELYIWVIKPTGEVTFRKADLKPLWQKENTTLAKLVTTSRNSIGARSTAFRGIKVTYNPNAPKGKNNLKRLHELLINPIASLLSKNSSDRIIFIPQSSLFLVPFAALQDADGKYLIEKHTILTSPSIQVLDLTHKQRQRIGTQPIQGKDTLIVGNPTMPFVAPKIGETPQQLIPLPGAEREAIAISKLLKTEPLIGKKATEATVVKRLPQARFIHLATHGIFDDIQGLNSGIALTPSGKDDGLLTASEILDLKLNAELVILSACDTGRGRLTGDGVIGLSRSLISAGVPSVLVSLWSVPDAPTSLLMTEFYQNLQKSQDKAQALRQAMLTTMKNNPNPVDWAAFTLIGEAE
>NC_010631.1|WP_012413012.1|163649_164471_+|heteromeric-transposase-endonuclease-subunit-TnsA
MARGRQEWTQAKFERYIKEGRGQGSGEKYKPWITVSDFSSMGRSARSPGWKTNRVHHFLSDHERRLFYLFEWSDIVVDIREQFPLLNLDLCTSIASDMGVKYPTDPVSGIPYVLTTDFMLTANKSGKSVQIARTVKPSSDLEKKSVAEKFELERRYYADQNIDWGIVTEKEIPRLLALNIEWIHSSYSLEATTEMAVEELRGLSSILKSRLQKSSATINKVTTALDREMNIESGTSLMLFKHLIATKEILMDMESTKISSCPSVQTIQKIIIK
>NC_010631.1|WP_012413013.1|164492_166721_+|DDE-type-integrase/transposase/recombinase
MNNNLFVNDLIEWIDSDPPNLIERVLWIDSGYNIAFVFDINAKKGFPEAKKVSEIRVAIHTEQALKLKQDPWARHLSDEDLTKIQKDYRENAWSLISSLVEKEPDIYYRSSRGSLIKQVVEQYNQGRSENKLVEKTVYEYLRRFWQRGKNQNALLPDYSNCGGLGKPKKCGEKKRGRPRKYAHEPEIGVGINVTDDDLKIFRISIAKFYNNDKQNSLRTTYKLMIREYYSSDIRYDENGVKKSLLIPPELRPTFTQLKYWYEVELSDIKKSITERKGAKRFALEHRAILETSKMETIGPGSRYQIDATIADVYLVSKYNSNWIIGRPVIYVIIDVFSRMIVGVYVGLEGPSWTGAMMALANAATDKIQFCQEYGINISSTEWPCHHLPDAILGDRGELAGMAVETLIPNLNVRIENAAPYRADWKGLVERYFRTIHGHVKPFLPGYIDTDFRQRGGRDYRLDSRVNIEQFTEIIIHLIRYHNNHHYLASYDREEMMITDNVNPIPIELWKWGIENRSGRLRTFPEDIIKLNLMPNNKATITARGIKFKGMYYSCEKALKEFWFEKARSNLLSKSDKLLDISYDYRKPNFIYVRSPDGRDFEKCFLLDPEERYSQKNIHDIEYLLAYEEWLYQKSQGNELQACVDLIADIESVVNRANDLASVTVDNRVSDNQKVAGIRRNRASEKAKRRDYEGFELAKRETPIPETVMPSKNSDSKENKSLQPDHLELLRKKRQEHFNEHRE
>NC_010631.1|WP_012413014.1|166704_168381_+|ATP-binding-protein
MNIENEWEWVKIPNGEWAAVAKYRDHKLSEYNTNPIIRSLPPIFSREKFVEYVTRLPTCKSSERELEPQYRFHCIERLSRYFDPLNKTVDLQQVVCVLIMQGYLRRNPLQPEYALRSGQIYQAVLSGGGFNLEEYVDVPTSASGLTIIGPSGIGKTTNLLNILSLYPQVIVHPAHSVYQIVWLKVDCPHAGSLKGLCIDFFRAVDKLLGTNNFQKFGVKRNSEDYMLAQVAQIAHTQHLGVLVIDEMQNLVAARRNSSEMLNFLVKMDNIIGVPVIRVGTNEAFPILQGNFRNARRGVGEGGVIWDRMENNREWNFFIEGMWEFQWTKQYIPLTANITSALYYESQGIIDIVIKLYKMVQWRAIALGSEVITVDLIHACAADGLHLVKPMLDAIRSGDEKWMMKYKDIAPLDTNLYRNKCLDSLEETDLEEVRRLARSSQRMGHISATLRHVIIELINLDVPPATAKSCAEKVVTPHGENADKKVLIKEAYKLALQCGNISTEPVQHQERKIKLQPKYQENDIRVIVENAKKNQTPACEDLKALGIIKDPLKDFFIGE
>NC_010631.1|WP_012413015.1|168384_169722_+|TniQ-family-protein
MLSFFPTPYPDEILYSVFARYHARSGNIKPDETLQELFNSRNIIVRPDLPYNLSYLIKNLPLLSQHTLESLIQKHTLYPMYAVFMPDSKSAILGYMKGELGTYIYRGIASSVYLPKYFRFCPKCLFENLHTFGEAYWHRLHQTPGVLVCTIHDVVLNDSIVPIWNNQWYQVGIASLENCPISNVTKNYSESTKELLRLIASDIEWLMTCDFKSLPSKELDWFHIQYIVLLIKRNLATLDRQVYEQGLRQKFLSFYGSEFLEALGINVSNNNINLFNIFRLHLEVFDPVMHLLMIRFLRHSPSTFFARKSKYKPFGKGPWLCLNPACEHYLHSVVTKLVMLLSNDLDSTYSYIKNPIGTFECDCGFQYSKIGVNLTKVDKFRFERIVTFGQLWEQKYLELNVVDRLNFQQAAYNLSFNYSKSPMTMLRKLEALWKSLNDSVEKDAG
>NC_010631.1|WP_167315708.1|169976_170684_-|TniQ-family-protein
MSGYVARLAEHHSTTTEQLILSQILPLMGQKMSQTSPIDIINNFFGIHHSLASANEIRGIFATTLIQVLEELTLRRDLANLSPLKWASLTFEFSFLRLYQAWCPLCYASWRTQNRIIYNPLLWLVNTIKFCPHHEHQTLIEQCPHCDKQFPPLTRCSRPGYCSSCHLWLGGFRINQNLDEQVVAENSENSWQHLLIGDVSSHRRDRLTWQFMWFDDVEDLVAKEPSQFLPPTNFG
>NC_010631.1|WP_041566580.1|170655_171018_-|hypothetical-protein
MNFQRPFPQELLTKSSTERLDYFHNITVGHLRLRQALDALLINLQQQTDICVLFVVGPAGVGKTTLRLRAEKLLLEEALTSMSYNTCQIPVAGIEAIPAEAYWYWYNLRRKLERVCSSSC
>NC_010631.1|WP_012413016.1|174026_176636_+|DDE-type-integrase/transposase/recombinase
MLSDQEFNDWCRGVNLPQEARQLISQIRASEPIRRVKSSGINVRGDYASRKMGKTIQFESHKIELPGVEEYEEDADVLEYYDQAYQITLEFPSSSGEIIKASHIPDFFVIRKRSAGFEEWKPESRLEKLAAKQSQRYMRSEDGQWLNLPAVAYAEKLGLYYRIRLDTEIDWIKYRNRLFLKAYTTEDYQIDPEIAENLVKLISLNPGISYWEMIHTQQSNPDDINALIATKKIYINLSAAPLAEPEKVQLFRDQEIAVAYVQMIKSQPNNGTILNILDVKPNQLERKTHNQVKMSPKAMERFLRASPEDLAEANRRYEVIEPYLNDSYRDKETVPQRTIRRWKAKFIAAQKAYKCGYIGLLNNSNARGNRLPRISQSSQDFIDKIIEEYYETFQQRSKLAVYGILAREWEKAGLTDKLPSYATFCSRIQHRSGYRQTKKRKGNRAAYQQSLLYWELKLTTPCHGDRPFEIAHIDHTQLDIELVCSRTGYLLGRPWATLLIDAYSRRILAVYLTFDEPSYRSCMMVLRICVQRFEKLPETIVVDGGTEFSSTYFETLLAAFECTKKQRPAAKARFGSIIERIFGTTNTEFFYNLRGNTQITKNVRQVTKSNNPKNQAVWTLDQLYENFCSYCYEFYDCREHPTLGQSPRQTFMSGLNSSGYRPQKQIIYDDNFKIFTLPSTPKGTAKVQPSRGVKINYLYYWSIDDSFIRPEIEGTNVPIRYDPFDMGTAYAYVKGRWIRCISEHYKSFQNRSEKEVNIASTQLRRKRQKHAQRITLSAQEKATYLEGTEAQETLLLQRLHDLAQQDIWVLIEKSSVIESKLSKHNYSANVQDVDKNILAGSESIKKPKSSAKKLIDLTKIEAYNTEELW
>NC_010631.1|WP_012412792.1|176629_177769_+|ATP-binding-protein
MVKIQSHSFPEELLLQPNEIKTDYFKSITIPHQRLKQALDTLLINILEPADTLVFLVFGVTGVGKTTLRLRLENLLNYEFLPSLRQNPGQIAVAGIEAIPTEQGKFSYKDYYTRALESLQEVLIEYKIDYEIPHGEVKDLGLLNRAYRQDSPALRRAMEKAFRYRQVKAFTVDEAQHLFMMAGGHQMLQQMNWIKSIANLTGTVHILFGTYELLNCPTLNGQIGRRSEDIHLLPYQADNPEDIAEFIRVIRTFQRHIPLVQEPKLEQHYEYLFSGSVGCVGLLKNWLTRSLRVAYSEEARTLNSKHLKLGAFSASRINKIKEEAQQGFKRFQEESSFFERQYSTEHGIKMPAKNSLLKKGRVGQRKPKRDDVGVNSDDD
>NC_010631.1|WP_012412791.1|177758_179345_+|TniQ-family-protein
MMTNMAVNDELWLKDPEFTPSPSRLFHLEPIGLGTCYVESLTSYVARLAAAHSVLPGTLLAREIKPIVGHNHTTNPLNSKSIVSLYGQASVKALNGTQIGAKQLVFALEILTKRTDLQFLTMLPWAKVFPVLGLLKHSHAWCPYCYQDWLNNQQVIYSPLLWALKPANICPIHYRFLESKCPHCDLEFLHLWHNSRPGFCLKCGGWLGMNYEVSLPDKRLFEEIPNLQQEIWIVKTLGDLIAQAPEFPCPPPRETIKTILEAYVYQYTQGNVSAFGRWLGLSRYEILHWYSGVAIPNLDKLLKICYALSTNLVDFLQLKILPLTLKQLVSLPAPKQKKLSSQSALVTSNSSPKCERVIQAMQLAQEEEPPPSLTQLAVRLGFKTPSSLTACSKSLSASLATRYSEYQQQLRFLHIRDILELALFSDEYPPPSLRKIAKRTGIGLATFYHYCPIVCHAISLRYKDYRKFVHKLAIEQGCREVRQLASVLHAQGITPTAKNLRKFMPHPSLLWQAEVIDVLRQIRLDLSQ
>NC_010631.1|WP_012413017.1|180215_180428_-|hypothetical-protein
MITPQNIYARVLVNSPAPVVEVEEKPVAISEPRVPDYIPFLDNPPVQSVGNSGWQVSDVWRDIRVDDFCN

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Crispr_ID: NC_010631_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010631_2

179693-179824

Orphan

A:N

Consensus_repeat	Method
GAAAAAATTTCATTTAGTCTGCAA	CRISPRCasFinder
TGCAGACTAAATGAAATTTTTTC	PILER-CR

2 spacers

The CRISPR arrays of NC_010631_2

>merge|NC_010631|2|179693-179824|CRISPRCasFinder,PILER-CR
TGGAAAATTTCATTTAGTCTGCGAATTTAGGGGGAAAATTTCACTTAGTCCGCGAAAAAATTTCATTTAGTCTGCAACAAAGGTTCCTCAAACCCTTATTATTACGTTGAAAAAATTTCATTTAGTCTGCAA

>NC_010631|2|2|179693-179824|CRISPRCasFinder
TGGAAAATTTCATTTAGTCTGCGA	ATTTAGGGGGAAAATTTCACTTAGTCCGC
GAAAAAATTTCATTTAGTCTGCAA	CAAAGGTTCCTCAAACCCTTATTATTACGTT
GAAAAAATTTCATTTAGTCTGCAA

>NC_010631|2|2|179696-179823|PILER-CR
AAAATTTCATTTAGTCTGCGAAT	TTAGGGGGAAAATTTCACTTAGTCCGCGAAA
AAATTTCATTTAGTCTGCAACAA	AGGTTCCTCAAACCCTTATTATTACGTTGAAA
AAATTTCATTTAGTCTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010631.1\|WP_012413023.1\|190539_192702_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NC_010631.1\|WP_012413026.1\|197543_201158_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NC_010631.1\|WP_012412791.1\|177758_179345_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_010631.1\|WP_012413015.1\|168384_169722_+\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|379756
NC_010631.1\|WP_012413024.1\|193852_195682_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_010631.1\|WP_012413012.1\|163649_164471_+\|heteromeric-transposase-endonuclease-subunit-TnsA	unknown	unknown	gnl\|CDD\|378036
NC_010631.1\|WP_012413011.1\|162594_163050_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NC_010631.1\|WP_041566581.1\|196637_196847_+\|hypothetical-protein	unknown	unknown	unknown
NC_010631.1\|WP_012413014.1\|166704_168381_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NC_010631.1\|WP_083782505.1\|189770_190199_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235035
NC_010631.1\|WP_041566580.1\|170655_171018_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274609
NC_010631.1\|WP_012413016.1\|174026_176636_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_010631.1\|WP_012413017.1\|180215_180428_-\|hypothetical-protein	unknown	unknown	unknown
NC_010631.1\|WP_012413019.1\|181429_182776_-\|response-regulator	unknown	unknown	gnl\|CDD\|381147
NC_010631.1\|WP_012413013.1\|164492_166721_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NC_010631.1\|WP_167315710.1\|185327_186113_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223797
NC_010631.1\|WP_012412792.1\|176629_177769_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379165
NC_010631.1\|WP_167315709.1\|182810_185297_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NC_010631.1\|WP_167315708.1\|169976_170684_-\|TniQ-family-protein	unknown	unknown	gnl\|CDD\|377670
NC_010631.1\|WP_012413022.1\|186442_188569_-\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236901

Protein	Function_ID	Function_description	E-value
NC_010631.1\|WP_012413023.1\|190539_192702_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.21316e-115
NC_010631.1\|WP_012412791.1\|177758_179345_+\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	2.63159e-11
NC_010631.1\|WP_012413015.1\|168384_169722_+\|TniQ-family-protein	gnl\|CDD\|379756	pfam15978, TnsD, Tn7-like transposition protein D. TnsD is a family of putative Tn7-like transposition proteins type D.	1.02974e-49
NC_010631.1\|WP_012413024.1\|193852_195682_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.81035e-37
NC_010631.1\|WP_012413012.1\|163649_164471_+\|heteromeric-transposase-endonuclease-subunit-TnsA	gnl\|CDD\|378036	pfam08721, Tn7_Tnp_TnsA_C, TnsA endonuclease C terminal. The Tn7 transposase is composed of proteins TnsA and TnsB. DNA breakage at the 5' end of the transposon is carried out by TnsA, and breakage and joining at the 3' end is carried out by TnsB. The C terminal domain of TnsA binds DNA.	1.87398e-22
NC_010631.1\|WP_012413011.1\|162594_163050_-\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	1.82186e-37
NC_010631.1\|WP_012413026.1\|197543_201158_+\|GAF-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.32907e-43
NC_010631.1\|WP_012413014.1\|166704_168381_+\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	1.09941e-20
NC_010631.1\|WP_041566580.1\|170655_171018_-\|hypothetical-protein	gnl\|CDD\|274609	TIGR03499, FlhF, flagellar biosynthetic protein FlhF. [Cellular processes, Chemotaxis and motility].	0.00207493
NC_010631.1\|WP_012413016.1\|174026_176636_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	6.58192e-08
NC_010631.1\|WP_012413022.1\|186442_188569_-\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	2.16588e-63
NC_010631.1\|WP_012413019.1\|181429_182776_-\|response-regulator	gnl\|CDD\|381147	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains. Pseudomonas aeruginosa cyclic di-GMP phosphodiesterase PA4781 contains an N-terminal REC domain and a C-terminal catalytic HD-GYP domain, characteristics of RpfG family response regulators. PA4781 is involved in cyclic di-3',5'-GMP (c-di-GMP) hydrolysis/degradation in a two-step reaction via the linear intermediate pGpG to produce GMP. Its unphosphorylated REC domain prevents accessibility of c-di-GMP to the active site. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	8.27599e-62
NC_010631.1\|WP_012413013.1\|164492_166721_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.16988e-07
NC_010631.1\|WP_167315710.1\|185327_186113_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|223797	COG0725, ModA, ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism].	8.36489e-50
NC_010631.1\|WP_012412792.1\|176629_177769_+\|ATP-binding-protein	gnl\|CDD\|379165	pfam13401, AAA_22, AAA domain.	6.64405e-08
NC_010631.1\|WP_167315709.1\|182810_185297_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.17291e-74
NC_010631.1\|WP_167315708.1\|169976_170684_-\|TniQ-family-protein	gnl\|CDD\|377670	pfam06527, TniQ, TniQ. This family consists of several bacterial TniQ proteins. TniQ along with TniA and B is involved in the transposition of the mercury-resistance transposon Tn5053 which carries the mer operon. It has been suggested that the tni genes are involved in the dissemination of integrons.	1.42877e-07
NC_010631.1\|WP_083782505.1\|189770_190199_+\|hypothetical-protein	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	3.31465e-46

>NC_010631.1|WP_012412791.1|177758_179345_+|TniQ-family-protein
MMTNMAVNDELWLKDPEFTPSPSRLFHLEPIGLGTCYVESLTSYVARLAAAHSVLPGTLLAREIKPIVGHNHTTNPLNSKSIVSLYGQASVKALNGTQIGAKQLVFALEILTKRTDLQFLTMLPWAKVFPVLGLLKHSHAWCPYCYQDWLNNQQVIYSPLLWALKPANICPIHYRFLESKCPHCDLEFLHLWHNSRPGFCLKCGGWLGMNYEVSLPDKRLFEEIPNLQQEIWIVKTLGDLIAQAPEFPCPPPRETIKTILEAYVYQYTQGNVSAFGRWLGLSRYEILHWYSGVAIPNLDKLLKICYALSTNLVDFLQLKILPLTLKQLVSLPAPKQKKLSSQSALVTSNSSPKCERVIQAMQLAQEEEPPPSLTQLAVRLGFKTPSSLTACSKSLSASLATRYSEYQQQLRFLHIRDILELALFSDEYPPPSLRKIAKRTGIGLATFYHYCPIVCHAISLRYKDYRKFVHKLAIEQGCREVRQLASVLHAQGITPTAKNLRKFMPHPSLLWQAEVIDVLRQIRLDLSQ
>NC_010631.1|WP_012412792.1|176629_177769_+|ATP-binding-protein
MVKIQSHSFPEELLLQPNEIKTDYFKSITIPHQRLKQALDTLLINILEPADTLVFLVFGVTGVGKTTLRLRLENLLNYEFLPSLRQNPGQIAVAGIEAIPTEQGKFSYKDYYTRALESLQEVLIEYKIDYEIPHGEVKDLGLLNRAYRQDSPALRRAMEKAFRYRQVKAFTVDEAQHLFMMAGGHQMLQQMNWIKSIANLTGTVHILFGTYELLNCPTLNGQIGRRSEDIHLLPYQADNPEDIAEFIRVIRTFQRHIPLVQEPKLEQHYEYLFSGSVGCVGLLKNWLTRSLRVAYSEEARTLNSKHLKLGAFSASRINKIKEEAQQGFKRFQEESSFFERQYSTEHGIKMPAKNSLLKKGRVGQRKPKRDDVGVNSDDD
>NC_010631.1|WP_012413016.1|174026_176636_+|DDE-type-integrase/transposase/recombinase
MLSDQEFNDWCRGVNLPQEARQLISQIRASEPIRRVKSSGINVRGDYASRKMGKTIQFESHKIELPGVEEYEEDADVLEYYDQAYQITLEFPSSSGEIIKASHIPDFFVIRKRSAGFEEWKPESRLEKLAAKQSQRYMRSEDGQWLNLPAVAYAEKLGLYYRIRLDTEIDWIKYRNRLFLKAYTTEDYQIDPEIAENLVKLISLNPGISYWEMIHTQQSNPDDINALIATKKIYINLSAAPLAEPEKVQLFRDQEIAVAYVQMIKSQPNNGTILNILDVKPNQLERKTHNQVKMSPKAMERFLRASPEDLAEANRRYEVIEPYLNDSYRDKETVPQRTIRRWKAKFIAAQKAYKCGYIGLLNNSNARGNRLPRISQSSQDFIDKIIEEYYETFQQRSKLAVYGILAREWEKAGLTDKLPSYATFCSRIQHRSGYRQTKKRKGNRAAYQQSLLYWELKLTTPCHGDRPFEIAHIDHTQLDIELVCSRTGYLLGRPWATLLIDAYSRRILAVYLTFDEPSYRSCMMVLRICVQRFEKLPETIVVDGGTEFSSTYFETLLAAFECTKKQRPAAKARFGSIIERIFGTTNTEFFYNLRGNTQITKNVRQVTKSNNPKNQAVWTLDQLYENFCSYCYEFYDCREHPTLGQSPRQTFMSGLNSSGYRPQKQIIYDDNFKIFTLPSTPKGTAKVQPSRGVKINYLYYWSIDDSFIRPEIEGTNVPIRYDPFDMGTAYAYVKGRWIRCISEHYKSFQNRSEKEVNIASTQLRRKRQKHAQRITLSAQEKATYLEGTEAQETLLLQRLHDLAQQDIWVLIEKSSVIESKLSKHNYSANVQDVDKNILAGSESIKKPKSSAKKLIDLTKIEAYNTEELW
>NC_010631.1|WP_041566580.1|170655_171018_-|hypothetical-protein
MNFQRPFPQELLTKSSTERLDYFHNITVGHLRLRQALDALLINLQQQTDICVLFVVGPAGVGKTTLRLRAEKLLLEEALTSMSYNTCQIPVAGIEAIPAEAYWYWYNLRRKLERVCSSSC
>NC_010631.1|WP_167315708.1|169976_170684_-|TniQ-family-protein
MSGYVARLAEHHSTTTEQLILSQILPLMGQKMSQTSPIDIINNFFGIHHSLASANEIRGIFATTLIQVLEELTLRRDLANLSPLKWASLTFEFSFLRLYQAWCPLCYASWRTQNRIIYNPLLWLVNTIKFCPHHEHQTLIEQCPHCDKQFPPLTRCSRPGYCSSCHLWLGGFRINQNLDEQVVAENSENSWQHLLIGDVSSHRRDRLTWQFMWFDDVEDLVAKEPSQFLPPTNFG
>NC_010631.1|WP_012413015.1|168384_169722_+|TniQ-family-protein
MLSFFPTPYPDEILYSVFARYHARSGNIKPDETLQELFNSRNIIVRPDLPYNLSYLIKNLPLLSQHTLESLIQKHTLYPMYAVFMPDSKSAILGYMKGELGTYIYRGIASSVYLPKYFRFCPKCLFENLHTFGEAYWHRLHQTPGVLVCTIHDVVLNDSIVPIWNNQWYQVGIASLENCPISNVTKNYSESTKELLRLIASDIEWLMTCDFKSLPSKELDWFHIQYIVLLIKRNLATLDRQVYEQGLRQKFLSFYGSEFLEALGINVSNNNINLFNIFRLHLEVFDPVMHLLMIRFLRHSPSTFFARKSKYKPFGKGPWLCLNPACEHYLHSVVTKLVMLLSNDLDSTYSYIKNPIGTFECDCGFQYSKIGVNLTKVDKFRFERIVTFGQLWEQKYLELNVVDRLNFQQAAYNLSFNYSKSPMTMLRKLEALWKSLNDSVEKDAG
>NC_010631.1|WP_012413014.1|166704_168381_+|ATP-binding-protein
MNIENEWEWVKIPNGEWAAVAKYRDHKLSEYNTNPIIRSLPPIFSREKFVEYVTRLPTCKSSERELEPQYRFHCIERLSRYFDPLNKTVDLQQVVCVLIMQGYLRRNPLQPEYALRSGQIYQAVLSGGGFNLEEYVDVPTSASGLTIIGPSGIGKTTNLLNILSLYPQVIVHPAHSVYQIVWLKVDCPHAGSLKGLCIDFFRAVDKLLGTNNFQKFGVKRNSEDYMLAQVAQIAHTQHLGVLVIDEMQNLVAARRNSSEMLNFLVKMDNIIGVPVIRVGTNEAFPILQGNFRNARRGVGEGGVIWDRMENNREWNFFIEGMWEFQWTKQYIPLTANITSALYYESQGIIDIVIKLYKMVQWRAIALGSEVITVDLIHACAADGLHLVKPMLDAIRSGDEKWMMKYKDIAPLDTNLYRNKCLDSLEETDLEEVRRLARSSQRMGHISATLRHVIIELINLDVPPATAKSCAEKVVTPHGENADKKVLIKEAYKLALQCGNISTEPVQHQERKIKLQPKYQENDIRVIVENAKKNQTPACEDLKALGIIKDPLKDFFIGE
>NC_010631.1|WP_012413013.1|164492_166721_+|DDE-type-integrase/transposase/recombinase
MNNNLFVNDLIEWIDSDPPNLIERVLWIDSGYNIAFVFDINAKKGFPEAKKVSEIRVAIHTEQALKLKQDPWARHLSDEDLTKIQKDYRENAWSLISSLVEKEPDIYYRSSRGSLIKQVVEQYNQGRSENKLVEKTVYEYLRRFWQRGKNQNALLPDYSNCGGLGKPKKCGEKKRGRPRKYAHEPEIGVGINVTDDDLKIFRISIAKFYNNDKQNSLRTTYKLMIREYYSSDIRYDENGVKKSLLIPPELRPTFTQLKYWYEVELSDIKKSITERKGAKRFALEHRAILETSKMETIGPGSRYQIDATIADVYLVSKYNSNWIIGRPVIYVIIDVFSRMIVGVYVGLEGPSWTGAMMALANAATDKIQFCQEYGINISSTEWPCHHLPDAILGDRGELAGMAVETLIPNLNVRIENAAPYRADWKGLVERYFRTIHGHVKPFLPGYIDTDFRQRGGRDYRLDSRVNIEQFTEIIIHLIRYHNNHHYLASYDREEMMITDNVNPIPIELWKWGIENRSGRLRTFPEDIIKLNLMPNNKATITARGIKFKGMYYSCEKALKEFWFEKARSNLLSKSDKLLDISYDYRKPNFIYVRSPDGRDFEKCFLLDPEERYSQKNIHDIEYLLAYEEWLYQKSQGNELQACVDLIADIESVVNRANDLASVTVDNRVSDNQKVAGIRRNRASEKAKRRDYEGFELAKRETPIPETVMPSKNSDSKENKSLQPDHLELLRKKRQEHFNEHRE
>NC_010631.1|WP_012413012.1|163649_164471_+|heteromeric-transposase-endonuclease-subunit-TnsA
MARGRQEWTQAKFERYIKEGRGQGSGEKYKPWITVSDFSSMGRSARSPGWKTNRVHHFLSDHERRLFYLFEWSDIVVDIREQFPLLNLDLCTSIASDMGVKYPTDPVSGIPYVLTTDFMLTANKSGKSVQIARTVKPSSDLEKKSVAEKFELERRYYADQNIDWGIVTEKEIPRLLALNIEWIHSSYSLEATTEMAVEELRGLSSILKSRLQKSSATINKVTTALDREMNIESGTSLMLFKHLIATKEILMDMESTKISSCPSVQTIQKIIIK
>NC_010631.1|WP_012413011.1|162594_163050_-|four-helix-bundle-protein
MDKNVGIADRSKAFAIRIIKACSFLDEKPGICRTLSKQLLRSGTSVGANIRESRSAQSDKDFLHKMEIALKEARETEYWLEILIESEVVEKAKFSSLLQEADEMVKILVASTRKIKERLNGNKLRSRKIVVARDKHSELTTTVNSKAIPPI
>NC_010631.1|WP_012413017.1|180215_180428_-|hypothetical-protein
MITPQNIYARVLVNSPAPVVEVEEKPVAISEPRVPDYIPFLDNPPVQSVGNSGWQVSDVWRDIRVDDFCN
>NC_010631.1|WP_012413019.1|181429_182776_-|response-regulator
MSVEITAPKGTILVVDDNPTNIQVLFDVLSEIGYRVAIAKSGEAALQRVQSYHPDIILLDVMMPGIDGFETCQRLKADCATCDIPVIFMTALSDTVDKVKGLSLGAVDYITKPIQHEEALARIRVHLQLRESQKSSQQKTTELSQALDILKQAQVHLVQSEKMSSLGQMMAGVAHEINNPMTFIHANLAPAKEHIQDLLNFIELYRQCHPQPHPKIQDWMDEVDIDYLEADLPKLMNSLKLGSDRIRQIVLSLRNFSRLDESGTQTVDLHENIESTLLLLQHRLKARPEHPGIQVVRDYGHLPHVECYPSQLNQVFMNIFGNAIDALEQRDQQRSSDEIRANPSNIAIRTEHLANESIAICIADNGCGVKENVCSQMFEPFFTTKPINKGTGLGLSISYQIVTQKHGGKIYCQSTLGKGTEFTIEIPVRQAGFVKLTQMATSKPVRFS
>NC_010631.1|WP_167315709.1|182810_185297_-|response-regulator
MTQSASFLKTVATSLGTATFFALAISGVAFWSANQTLETNRQIAQHLETLNRLESLRSALKDTEKMQRQYLLTGKEDALIVFGLKMIDVDQQMRRLQPLLRNKDSEQAYAQKLEELTIFRLKQLRQGIELRQSRGIDAAIDHAPMRLLDETTLLMQQIEAIETVGLQQKQLATISTTSQAMVTFLVGIGLNLAIILWTYYLICKETMKRNQAETDLQQNNLTLQEQTNLMQLILNSMSDGVIVSDDKGKFLIVNPAAEQMFGGITESQQSEWSEQYGLFQADRVTLFPTQEIPLVRTLRGEQVQNVEMFTRHSKAPEGIWITVSGTPLKDASGTLKGGVVVCRDITERKSAELKILQAKEAAEVANHAKSEFLANMNHELRTPLNGILGYAQILQRDPATTSKQQKGLSVIHQCGSHLLTLINDILDLSKLEVQKMDLYPQDFHFANFLTTTVEICRIKAEQKGIAFRYHPANLPTAVHADDKRLRQVLLNLLSNAIKFTDFGSVKFTVEAISNEETADTRSTRIRFLVEDTGIGIPTEKWQTIFLPFEQAGKRDRNSEGTGLGLAISQQIVQMMGSSIQVNSTPGKGSKFWFEVDILAAADWLAQPASSNLKVIGYQGERRKILVIDDRLENRAVVMGMLAPLGFKLAQADDGQTGLDLALQMRPDLIITDVMMSKMNGLEMTRRLRQLSDFAVTPIIASPASLSQVDIQEALDAGCSSFFPKPLEFIGLLGELQRHLELQWIYETAPQTEEVSAEDFSSPQLVVPSPQELTTLYRAAQDGFMSDIHQEANRLKQLNPQYAPFANKLLELSQKFDDEAILNLLAPHI
>NC_010631.1|WP_167315710.1|185327_186113_-|molybdate-ABC-transporter-substrate-binding-protein
MKRFGWMALCLITLIVALWLGSCSPPPTQVIALNFCSAGMVRSALEELDATYQQEHPNVVLNYTFAGSKTTKAAIEQGEPFDGVLFAEIPPLDDLQAKGLILPTSRKELVTTDIVVIAPVDSPLQLSDLRELASDRIKTVAIGGKGPAIGRYTHALLTRLGIAQIVESKAIQTKVDVREVLRTVELGEAEVGITFLSEAKSSDKVKVLTTAAAELYEPIRSGVAVVKTSTHAQEMQTYLDFLTSERAKAVFQRFGLHPLVS
>NC_010631.1|WP_012413022.1|186442_188569_-|PAS-domain-containing-sensor-histidine-kinase
MSQNYFFNSDLQRDDLYCSFLENLPIAAAILDCEMKYLLTSQGWLSELGLEGQDIIGRSHLEVFRQFCEPLTQAYQYCLMAAVELCVEEQFQQVDGLTGWRQWTLRPWCSSTRVVNGVMLVAEDVTDRKQAELALRHSEERYRFLITAISQIIWDTKAEGEFINEQPGWSAFTGQTFEELKGWGWLNAVHPDDRLHTAKVWSQAVASRTLYKLEHRLRRHDGEYCHMSVRAFPILNPDGGIREWIGVHTDITEYKQAQEAMLCLAAIVESSDDAIISKTLDGVIVSWNRGAEALFGYQAQEVIGQPMAMLVPGDRINEEPQILKKLRQGERVDHFETVRQRKDGTLIDLSLTISPVKDSTGKIIGASKIARDISARKDAQEALRQKAADLETTLLELKRTQTQLVQNEKMSSLGQLVAGVAHEINNPVNFIYANFKPANEYIQHLLGLLQLYQQHYPSPAPEIQGKSEEIDLEFLLEDLPKLLCSMEVGADRIKKIVLSLRNFSRMDEAEMKAVNIHEGIDSTLMILQNRLKAKHDHPGIEIIKEYGNLPLVECYAGQLNQVFMNIISNAIDALEEPHQSCTLQEIEQKTSEIRIFTAMVGSDHVQIRIVDNGPGIPEFVQKRLCDPFFTTKPVGKGTGLGMSISYQIVTEKHGGSLRYHSIPGQGAEFVIEIPIRQSKCTLPMLGDKTANKTISETTLMVLSDFGDQ
>NC_010631.1|WP_083782505.1|189770_190199_+|hypothetical-protein
MHSLGINAGMDLKGRSLTELTHHFGKAGNYYYRIARAEDDRPVEANRVRKSIGAENSFAHNLSDVGQMLQELEQIAQIVEQRLEKHETRGRTLTLKVKFSDYQQLTRGKTMLAPISGLDTIFELAKALFESIDLENRSISFM
>NC_010631.1|WP_012413023.1|190539_192702_+|EAL-domain-containing-protein
MRTSEQIKAEIKEKFGFVPPFFESAEENIQVLENLWQQTVCAYVNNPLSLVFKEKLSAYLSRYCAMPYCMICHSCSLYSLGVEASKVLEMIGSPPPAETDIEIHLCLLRNSINELMDLSSLSPIVEESLLYCSIYMFLEPEQSQYCRSELRLLLGSVNYQHLVTFAGYVKMCHVWVESHPEVNYQTDKRAIEHLEKLVQGEPGLSDFFSNYINKVRHEREKRAEQVAQKAKYQRIQEALQQVNGELEEKVKQPTAELSDFNMLLKQEIDKRQQAEAQLLHVVFHDSLTGLPNRTLFIQRLEQGIERVKKQPSVGLALLYLDLDRFGVVNNSLGYTSGDQLLIAFARRLEICVRSQDIFARLEADEFGILLEDIQALSDVIGFAQLLQEKLKMPFYLGSQEVFISASIGIASTTVGYEQAQILVGNANIAMHRAKSLGKASYKVFDTPMFMETNKLLQLESDLERAVENQEFRLAYQPIVSLSTNNLIGFEALIRWQHPRRGLVFPGEFISVAEETGMIVDISYWVLREACRQLYVWQQKFLNDQLAISVNISSKQLSQSNLNQEIRQILEETNLDARNLKLELTETTIVENSQSTIEKLWQLKEMGVQLHVDDFGTGYSSLSYLHHFPISVLKIDRSFINRIDTNSKNAEIVSTIITLAHNLGIDVTAEGIETLEQLELLQKLQCKYGQGYLFSKPVKASAVKSKLRPFLHEDRSYRWVH
>NC_010631.1|WP_012413024.1|193852_195682_-|HAMP-domain-containing-histidine-kinase
MNDFITLPHRLLAKVTHNLSIGQKISYGYALSLSIAIVGTVTGLIIGDFYQTPAQQEKGNAQYEISLLYRLQATVLQARTSQQQFIYLVNQPELLKKEYSNFSSYAIEIKKAWSDLESYINTKNYQQENHAEGIPSFLKTYSTIPNVYIQQVNTLVEKILSEDVKLKDIQATQKLLSNFSTSRIALKYDMIDDDLTQVISASYQDNKNAEIHLQNVLKARFWLISISIILSIIIATTLAIYTSRLLTAPIKAVTNVAQRTTEELKFDILAPVMTADEIGVLANSFNKLIQRIAEYTHELNLARETLESRVEERTQDLSKALQSLQHTQSQLVQAEKMSSLGKLVAGVAHEINNPVNFIFGNLTHVDEYVTNLLSLINLYRQDYRGTDIEISEWIEEIDLDYIYDDLPKTLMSMKVGANRIREIVLALRNFSRLDEAEMKLVNIHEGIDSTLLFSQSCFKAKYKQLAIEIVKQYGELPPVECYAGQLNQVFMNILDNSMYALNQKYNNILKEQLETNFSTITICTELIENNCVRICFKDNGPGITESIRTRVFDPFFTTKPVGDGTGLGLSISYQIVVDQHQGKFKCLSVLGEGSEFQIEIPISQKVKSA
>NC_010631.1|WP_041566581.1|196637_196847_+|hypothetical-protein
MNVEASVSVSISIGIASYEWEKEKIRRSRIVLLTFPAISLIERRRFVVKQFKEIAGKVELKLLHPEGKS
>NC_010631.1|WP_012413026.1|197543_201158_+|GAF-domain-containing-protein
MEFLTNQVSQTQEILLHRIASRIRQSLELQEILSATVAEVRSFLGTDRIKIYQFQADGHGLVIAESIQEDRLPPLLGLNFPADDIPPYARELFVRARQRCIVDLTTQEIGISPLDCPETGKPLEQQDIRYRPVDPCHLEYLTAMGVKSSVVVPIVLKNQETGKDSSPNVMESSQLWGLLVSHHSQARVVTQQELLLIQSVVDQVAIAISQSILLTQVREQARQEAIINKVTEQLHSTPVAQLQTALEETVAAFNGSGGRLYLLPDDEQTAKLYTFGLQPNQLDIGQEQTPSPLTQELSLVDRAWVSPMERNNEVLLLANLREGSDVLRKGRPIEEHRLWQKYLFASICPPENLENPSHKSWSVNWMRAIYALTPPVNELSYDSNLWAIADLYKEPLLRSVAPCFQTTQVRGLLIVPLQHGSTIVGCLTIFRDEVDIETIWAGCVDTDSRQLMPRQSFAAWRELRTGQAQQWSESEIKLAQALGERFATAVKQHRLYEQVQALNANLEQQVRDRTLELQQTNTDLQHSTIELQRSVERQQALARIIANMRQSLDVTTIFRTTTQEVCQLLECDRLSVYRFNADWGGEFVGDYETANPRWGRSIKLGVGMVWDDTYLQETQGGRYRNNETFVVDDIHSQGFTQCHIEILEQFHVQAFMIAPIFVGQELWGLLGAYQHSSTRHWQASEIEFFTQIATQLGVALQQAEYLEQVRAQTRKLALVAEQQQTLASVITKIRESLDLNAIFETTTQELRRVLNCDRVVIFRFYSESNYDGGEVIAEDVAERFLSTLTAKVYDRCLGQEHIEKFCQGYVHAVTDIYNSELNECYVSMLSRFQVRANLVIPMLKQGQLWGLLGIHQCQKSREWQDSEIEFVRQIAAQLGVALQHVVLLNQTQQQAIQLAQALEHLQQTQAHLLHSEKMSSLGLLVAGVAHEINNPVNFISGNLSHLHEYTQSLIKMLNIYQQIYPQPHPEIEKQAILSDLEFIAEDLPKLFSSLKIGAERIGEIVLSLRNFSRLDQAQVKPVDIHEGLDSTLLILQHRLKANSLHLGIEIVKQYASLPLIECFAGQLNQVFMNLLANAIDAVEEPCRQPAKSDKDKHYPRITIKTQLIANDWVQIYIKDNGVGMTKAVQAKLFDPFFTTKPVGQGTGLGLSISYQIVEKHGGKLQCLSQPGEGAQFVIEIPIKQSERELANVLIDKKESDTDNS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010631_1	1.1\|163441\|29\|NC_010631\|CRISPRCasFinder	163441-163469	29	NC_010628.1	4036287-4036315	0	1.0
NC_010631_1	1.2\|163494\|31\|NC_010631\|CRISPRCasFinder	163494-163524	31	NC_010628.1	4036232-4036262	1	0.968
NC_010631_1	1.4\|163501\|31\|NC_010631\|PILER-CR	163501-163531	31	NC_010628.1	4036232-4036262	1	0.968
NC_010631_2	2.1\|179717\|29\|NC_010631\|CRISPRCasFinder	179717-179745	29	NC_010628.1	4036287-4036315	0	1.0
NC_010631_2	2.2\|179770\|31\|NC_010631\|CRISPRCasFinder	179770-179800	31	NC_010628.1	4036232-4036262	1	0.968
NC_010631_2	2.4\|179773\|32\|NC_010631\|PILER-CR	179773-179804	32	NC_010628.1	4036232-4036263	1	0.969

1. spacer 1.1|163441|29|NC_010631|CRISPRCasFinder matches to position: 4036287-4036315, mismatch: 0, identity: 1.0

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttagggggaaaatttcacttagtccgc	Protospacer
*****************************

2. spacer 1.2|163494|31|NC_010631|CRISPRCasFinder matches to position: 4036232-4036262, mismatch: 1, identity: 0.968

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaagttcctcaaacccttattattacgtt	Protospacer
****.**************************

3. spacer 1.4|163501|31|NC_010631|PILER-CR matches to position: 4036232-4036262, mismatch: 1, identity: 0.968

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaagttcctcaaacccttattattacgtt	Protospacer
****.**************************

4. spacer 2.1|179717|29|NC_010631|CRISPRCasFinder matches to position: 4036287-4036315, mismatch: 0, identity: 1.0

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttagggggaaaatttcacttagtccgc	Protospacer
*****************************

5. spacer 2.2|179770|31|NC_010631|CRISPRCasFinder matches to position: 4036232-4036262, mismatch: 1, identity: 0.968

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaagttcctcaaacccttattattacgtt	Protospacer
****.**************************

6. spacer 2.4|179773|32|NC_010631|PILER-CR matches to position: 4036232-4036263, mismatch: 1, identity: 0.969

acaaaggttcctcaaacccttattattacgtt	CRISPR spacer
acaaaagttcctcaaacccttattattacgtt	Protospacer
*****.**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010631_1	1.1\|163441\|29\|NC_010631\|CRISPRCasFinder	163441-163469	29	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	163441-163469	0	1.0
NC_010631_1	1.1\|163441\|29\|NC_010631\|CRISPRCasFinder	163441-163469	29	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	179717-179745	0	1.0
NC_010631_1	1.2\|163494\|31\|NC_010631\|CRISPRCasFinder	163494-163524	31	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	163494-163524	0	1.0
NC_010631_1	1.2\|163494\|31\|NC_010631\|CRISPRCasFinder	163494-163524	31	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	179770-179800	0	1.0
NC_010631_1	1.3\|163445\|31\|NC_010631\|PILER-CR	163445-163475	31	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	163439-163469	0	1.0
NC_010631_1	1.3\|163445\|31\|NC_010631\|PILER-CR	163445-163475	31	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	179715-179745	0	1.0
NC_010631_1	1.4\|163501\|31\|NC_010631\|PILER-CR	163501-163531	31	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	163494-163524	0	1.0
NC_010631_1	1.4\|163501\|31\|NC_010631\|PILER-CR	163501-163531	31	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	179770-179800	0	1.0
NC_010631_2	2.1\|179717\|29\|NC_010631\|CRISPRCasFinder	179717-179745	29	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	163441-163469	0	1.0
NC_010631_2	2.1\|179717\|29\|NC_010631\|CRISPRCasFinder	179717-179745	29	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	179717-179745	0	1.0
NC_010631_2	2.2\|179770\|31\|NC_010631\|CRISPRCasFinder	179770-179800	31	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	163494-163524	0	1.0
NC_010631_2	2.2\|179770\|31\|NC_010631\|CRISPRCasFinder	179770-179800	31	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	179770-179800	0	1.0
NC_010631_2	2.3\|179719\|31\|NC_010631\|PILER-CR	179719-179749	31	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	163439-163469	0	1.0
NC_010631_2	2.3\|179719\|31\|NC_010631\|PILER-CR	179719-179749	31	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	179715-179745	0	1.0
NC_010631_2	2.4\|179773\|32\|NC_010631\|PILER-CR	179773-179804	32	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	163493-163524	0	1.0
NC_010631_2	2.4\|179773\|32\|NC_010631\|PILER-CR	179773-179804	32	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	179769-179800	0	1.0
NC_010631_1	1.1\|163441\|29\|NC_010631\|CRISPRCasFinder	163441-163469	29	NZ_CP046704	Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence	326847-326875	1	0.966
NC_010631_1	1.3\|163445\|31\|NC_010631\|PILER-CR	163445-163475	31	NZ_CP046704	Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence	326845-326875	1	0.968
NC_010631_2	2.1\|179717\|29\|NC_010631\|CRISPRCasFinder	179717-179745	29	NZ_CP046704	Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence	326847-326875	1	0.966
NC_010631_2	2.3\|179719\|31\|NC_010631\|PILER-CR	179719-179749	31	NZ_CP046704	Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence	326845-326875	1	0.968
NC_010631_1	1.1\|163441\|29\|NC_010631\|CRISPRCasFinder	163441-163469	29	NZ_CP046705	Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence	67897-67925	2	0.931
NC_010631_1	1.1\|163441\|29\|NC_010631\|CRISPRCasFinder	163441-163469	29	AP018319	Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome	251007-251035	2	0.931
NC_010631_1	1.3\|163445\|31\|NC_010631\|PILER-CR	163445-163475	31	NZ_CP046705	Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence	67897-67927	2	0.935
NC_010631_1	1.3\|163445\|31\|NC_010631\|PILER-CR	163445-163475	31	AP018319	Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome	251005-251035	2	0.935
NC_010631_2	2.1\|179717\|29\|NC_010631\|CRISPRCasFinder	179717-179745	29	NZ_CP046705	Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence	67897-67925	2	0.931
NC_010631_2	2.1\|179717\|29\|NC_010631\|CRISPRCasFinder	179717-179745	29	AP018319	Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome	251007-251035	2	0.931
NC_010631_2	2.3\|179719\|31\|NC_010631\|PILER-CR	179719-179749	31	NZ_CP046705	Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence	67897-67927	2	0.935
NC_010631_2	2.3\|179719\|31\|NC_010631\|PILER-CR	179719-179749	31	AP018319	Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome	251005-251035	2	0.935
NC_010631_1	1.2\|163494\|31\|NC_010631\|CRISPRCasFinder	163494-163524	31	NC_017073	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence	24503-24533	8	0.742
NC_010631_1	1.4\|163501\|31\|NC_010631\|PILER-CR	163501-163531	31	NC_017073	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence	24503-24533	8	0.742
NC_010631_2	2.2\|179770\|31\|NC_010631\|CRISPRCasFinder	179770-179800	31	NC_017073	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence	24503-24533	8	0.742
NC_010631_1	1.3\|163445\|31\|NC_010631\|PILER-CR	163445-163475	31	NZ_CP031066	Bacillus sp. SH8-8 plasmid pl193, complete sequence	94049-94079	9	0.71
NC_010631_1	1.3\|163445\|31\|NC_010631\|PILER-CR	163445-163475	31	NZ_CP031063	Bacillus sp. AR4-2 plasmid pl192, complete sequence	94049-94079	9	0.71
NC_010631_2	2.3\|179719\|31\|NC_010631\|PILER-CR	179719-179749	31	NZ_CP031066	Bacillus sp. SH8-8 plasmid pl193, complete sequence	94049-94079	9	0.71
NC_010631_2	2.3\|179719\|31\|NC_010631\|PILER-CR	179719-179749	31	NZ_CP031063	Bacillus sp. AR4-2 plasmid pl192, complete sequence	94049-94079	9	0.71
NC_010631_2	2.4\|179773\|32\|NC_010631\|PILER-CR	179773-179804	32	NC_017073	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence	24502-24533	9	0.719

1. spacer 1.1|163441|29|NC_010631|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttagggggaaaatttcacttagtccgc	Protospacer
*****************************

2. spacer 1.1|163441|29|NC_010631|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttagggggaaaatttcacttagtccgc	Protospacer
*****************************

3. spacer 1.2|163494|31|NC_010631|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaggttcctcaaacccttattattacgtt	Protospacer
*******************************

4. spacer 1.2|163494|31|NC_010631|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaggttcctcaaacccttattattacgtt	Protospacer
*******************************

5. spacer 1.3|163445|31|NC_010631|PILER-CR matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
gaatttagggggaaaatttcacttagtccgc	Protospacer
*******************************

6. spacer 1.3|163445|31|NC_010631|PILER-CR matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
gaatttagggggaaaatttcacttagtccgc	Protospacer
*******************************

7. spacer 1.4|163501|31|NC_010631|PILER-CR matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaggttcctcaaacccttattattacgtt	Protospacer
*******************************

8. spacer 1.4|163501|31|NC_010631|PILER-CR matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaggttcctcaaacccttattattacgtt	Protospacer
*******************************

9. spacer 2.1|179717|29|NC_010631|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttagggggaaaatttcacttagtccgc	Protospacer
*****************************

10. spacer 2.1|179717|29|NC_010631|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttagggggaaaatttcacttagtccgc	Protospacer
*****************************

11. spacer 2.2|179770|31|NC_010631|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaggttcctcaaacccttattattacgtt	Protospacer
*******************************

12. spacer 2.2|179770|31|NC_010631|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaggttcctcaaacccttattattacgtt	Protospacer
*******************************

13. spacer 2.3|179719|31|NC_010631|PILER-CR matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
gaatttagggggaaaatttcacttagtccgc	Protospacer
*******************************

14. spacer 2.3|179719|31|NC_010631|PILER-CR matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
gaatttagggggaaaatttcacttagtccgc	Protospacer
*******************************

15. spacer 2.4|179773|32|NC_010631|PILER-CR matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

acaaaggttcctcaaacccttattattacgtt	CRISPR spacer
acaaaggttcctcaaacccttattattacgtt	Protospacer
********************************

16. spacer 2.4|179773|32|NC_010631|PILER-CR matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 0, identity: 1.0

acaaaggttcctcaaacccttattattacgtt	CRISPR spacer
acaaaggttcctcaaacccttattattacgtt	Protospacer
********************************

17. spacer 1.1|163441|29|NC_010631|CRISPRCasFinder matches to NZ_CP046704 (Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence) position: , mismatch: 1, identity: 0.966

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttaggaggaaaatttcacttagtccgc	Protospacer
*******.*********************

18. spacer 1.3|163445|31|NC_010631|PILER-CR matches to NZ_CP046704 (Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence) position: , mismatch: 1, identity: 0.968

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
gaatttaggaggaaaatttcacttagtccgc	Protospacer
*********.*********************

19. spacer 2.1|179717|29|NC_010631|CRISPRCasFinder matches to NZ_CP046704 (Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence) position: , mismatch: 1, identity: 0.966

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttaggaggaaaatttcacttagtccgc	Protospacer
*******.*********************

20. spacer 2.3|179719|31|NC_010631|PILER-CR matches to NZ_CP046704 (Nostoc sp. ATCC 53789 plasmid pNsp_a, complete sequence) position: , mismatch: 1, identity: 0.968

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
gaatttaggaggaaaatttcacttagtccgc	Protospacer
*********.*********************

21. spacer 1.1|163441|29|NC_010631|CRISPRCasFinder matches to NZ_CP046705 (Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence) position: , mismatch: 2, identity: 0.931

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttaggaggaaaatttcacttagtctgc	Protospacer
*******.******************.**

22. spacer 1.1|163441|29|NC_010631|CRISPRCasFinder matches to AP018319 (Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome) position: , mismatch: 2, identity: 0.931

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttagggggaaaatttcactaagtctgc	Protospacer
********************* ****.**

23. spacer 1.3|163445|31|NC_010631|PILER-CR matches to NZ_CP046705 (Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence) position: , mismatch: 2, identity: 0.935

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
gaatttaggaggaaaatttcacttagtctgc	Protospacer
*********.******************.**

24. spacer 1.3|163445|31|NC_010631|PILER-CR matches to AP018319 (Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome) position: , mismatch: 2, identity: 0.935

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
gaatttagggggaaaatttcactaagtctgc	Protospacer
*********************** ****.**

25. spacer 2.1|179717|29|NC_010631|CRISPRCasFinder matches to NZ_CP046705 (Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence) position: , mismatch: 2, identity: 0.931

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttaggaggaaaatttcacttagtctgc	Protospacer
*******.******************.**

26. spacer 2.1|179717|29|NC_010631|CRISPRCasFinder matches to AP018319 (Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome) position: , mismatch: 2, identity: 0.931

atttagggggaaaatttcacttagtccgc	CRISPR spacer
atttagggggaaaatttcactaagtctgc	Protospacer
********************* ****.**

27. spacer 2.3|179719|31|NC_010631|PILER-CR matches to NZ_CP046705 (Nostoc sp. ATCC 53789 plasmid pNsp_b, complete sequence) position: , mismatch: 2, identity: 0.935

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
gaatttaggaggaaaatttcacttagtctgc	Protospacer
*********.******************.**

28. spacer 2.3|179719|31|NC_010631|PILER-CR matches to AP018319 (Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome) position: , mismatch: 2, identity: 0.935

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
gaatttagggggaaaatttcactaagtctgc	Protospacer
*********************** ****.**

29. spacer 1.2|163494|31|NC_010631|CRISPRCasFinder matches to NC_017073 (Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence) position: , mismatch: 8, identity: 0.742

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaggttcatcaaacccgtattgctttgcg	Protospacer
********* ******** ****..* .*.

30. spacer 1.4|163501|31|NC_010631|PILER-CR matches to NC_017073 (Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence) position: , mismatch: 8, identity: 0.742

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaggttcatcaaacccgtattgctttgcg	Protospacer
********* ******** ****..* .*.

31. spacer 2.2|179770|31|NC_010631|CRISPRCasFinder matches to NC_017073 (Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence) position: , mismatch: 8, identity: 0.742

caaaggttcctcaaacccttattattacgtt	CRISPR spacer
caaaggttcatcaaacccgtattgctttgcg	Protospacer
********* ******** ****..* .*.

32. spacer 1.3|163445|31|NC_010631|PILER-CR matches to NZ_CP031066 (Bacillus sp. SH8-8 plasmid pl193, complete sequence) position: , mismatch: 9, identity: 0.71

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
aaatttaggggaataatttcacttgattttg	Protospacer
.**********.* **********..*..

33. spacer 1.3|163445|31|NC_010631|PILER-CR matches to NZ_CP031063 (Bacillus sp. AR4-2 plasmid pl192, complete sequence) position: , mismatch: 9, identity: 0.71

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
aaatttaggggaataatttcacttgattttg	Protospacer
.**********.* **********..*..

34. spacer 2.3|179719|31|NC_010631|PILER-CR matches to NZ_CP031066 (Bacillus sp. SH8-8 plasmid pl193, complete sequence) position: , mismatch: 9, identity: 0.71

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
aaatttaggggaataatttcacttgattttg	Protospacer
.**********.* **********..*..

35. spacer 2.3|179719|31|NC_010631|PILER-CR matches to NZ_CP031063 (Bacillus sp. AR4-2 plasmid pl192, complete sequence) position: , mismatch: 9, identity: 0.71

gaatttagggggaaaatttcacttagtccgc	CRISPR spacer
aaatttaggggaataatttcacttgattttg	Protospacer
.**********.* **********..*..

36. spacer 2.4|179773|32|NC_010631|PILER-CR matches to NC_017073 (Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence) position: , mismatch: 9, identity: 0.719

acaaaggttcctcaaacccttattattacgtt	CRISPR spacer
gcaaaggttcatcaaacccgtattgctttgcg	Protospacer
.********* ******** ****..* .*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

14105 : 176636

Bacillus_phage(26.67%)

integrase,bacteriocin,transposase

attL 163218:163277|attR 179494:179831

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407621.1\|14105_15020_+\|integrase	tyrosine-type recombinase/integrase	A0A1U9WS15	Gordonia_phage	3.1e-06	24.7
WP_012412929.1\|15141_18186_+\|transposase	Tn3-like element ISNpu13 family transposase	A0A1B0V7H9	Salmonella_phage	2.7e-62	23.8
WP_052304723.1\|18263_19145_-	RNA polymerase sigma factor, RpoD/SigA family	F4YCU2	Synechococcus_phage	8.9e-35	35.3
WP_012412930.1\|19235_21482_-	ATP-dependent RecD-like DNA helicase	U5J9B0	Bacillus_phage	4.1e-60	29.2
WP_012412931.1\|21890_22667_+	ParA family protein	Q8JL10	Natrialba_phage	8.1e-16	30.6
WP_012412932.1\|22663_23587_+	ParB/RepB/Spo0J family partition protein	S5WII0	Leptospira_phage	2.6e-08	29.9
WP_041566570.1\|23723_23909_-	hypothetical protein	NA	NA	NA	NA
WP_086000632.1\|24628_24781_-	hypothetical protein	NA	NA	NA	NA
WP_012412933.1\|25160_26120_+	ParM/StbA family protein	NA	NA	NA	NA
WP_012412934.1\|26130_26424_+	hypothetical protein	NA	NA	NA	NA
WP_012412935.1\|26638_26896_+	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_012412936.1\|26895_27198_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012412937.1\|27367_32191_-	hypothetical protein	NA	NA	NA	NA
WP_041566571.1\|32238_32769_+	hypothetical protein	NA	NA	NA	NA
WP_012412939.1\|32989_33391_-	hypothetical protein	NA	NA	NA	NA
WP_012412940.1\|33654_34173_-	hypothetical protein	NA	NA	NA	NA
WP_012412941.1\|34088_34940_-	hypothetical protein	NA	NA	NA	NA
WP_012412942.1\|35045_35480_-	hypothetical protein	NA	NA	NA	NA
WP_148220471.1\|35556_36657_-	ParM/StbA family protein	NA	NA	NA	NA
WP_012412944.1\|37397_43826_+	relaxase domain-containing protein	NA	NA	NA	NA
WP_012412945.1\|43873_44737_-	restriction endonuclease	NA	NA	NA	NA
WP_012412946.1\|44934_46182_-	hypothetical protein	NA	NA	NA	NA
WP_012412947.1\|46174_46591_-	hypothetical protein	NA	NA	NA	NA
WP_012412948.1\|46845_48609_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_012412949.1\|48605_49784_-	hypothetical protein	NA	NA	NA	NA
WP_012412950.1\|49783_50614_-	hypothetical protein	NA	NA	NA	NA
WP_012412951.1\|50644_52111_-	hypothetical protein	NA	NA	NA	NA
WP_012412952.1\|52107_52827_-	hypothetical protein	NA	NA	NA	NA
WP_148220484.1\|52823_53783_-	hypothetical protein	NA	NA	NA	NA
WP_148220485.1\|53912_54215_-	hypothetical protein	NA	NA	NA	NA
WP_012412955.1\|54582_55125_-	hypothetical protein	NA	NA	NA	NA
WP_167315703.1\|58194_58644_-	hypothetical protein	NA	NA	NA	NA
WP_012412958.1\|58722_59034_-	hypothetical protein	NA	NA	NA	NA
WP_012412959.1\|59139_59346_-	hypothetical protein	NA	NA	NA	NA
WP_012412960.1\|59546_59939_+	hypothetical protein	NA	NA	NA	NA
WP_041566574.1\|60436_60988_+	hypothetical protein	NA	NA	NA	NA
WP_086000586.1\|61040_62271_+\|transposase	ISAzo13-like element ISNpu10 family transposase	NA	NA	NA	NA
WP_052304724.1\|62457_64083_+	AAA family ATPase	A0A0K2FLP8	Brevibacillus_phage	3.3e-43	30.0
WP_167315704.1\|64024_64390_+	hypothetical protein	NA	NA	NA	NA
WP_012412962.1\|64453_65158_-	hypothetical protein	NA	NA	NA	NA
WP_012412963.1\|66438_67101_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012412964.1\|67203_70677_-	DUF3854 domain-containing protein	A0A1D6Y7K0	Golden_Marseillevirus	8.4e-20	23.1
WP_012412965.1\|71701_73144_+	ATP-binding protein	NA	NA	NA	NA
WP_148220486.1\|73341_75087_+	tetratricopeptide repeat protein	M1HZT4	Acanthocystis_turfacea_Chlorella_virus	3.5e-06	26.3
WP_012412967.1\|75246_76125_+	hypothetical protein	NA	NA	NA	NA
WP_012412968.1\|76085_78590_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_012412969.1\|78602_80858_-	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_148220473.1\|81099_81876_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012412971.1\|82305_83247_+	hypothetical protein	NA	NA	NA	NA
WP_012412972.1\|83288_83657_-	hypothetical protein	NA	NA	NA	NA
WP_167315705.1\|83763_83943_-	hypothetical protein	NA	NA	NA	NA
WP_012412974.1\|84421_86605_-	caspase family protein	NA	NA	NA	NA
WP_012412975.1\|86696_89213_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_148220474.1\|89321_91823_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_012412977.1\|91981_93133_+\|transposase	IS630-like element ISNpu2 family transposase	NA	NA	NA	NA
WP_167315706.1\|93818_94574_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_041566607.1\|94669_98005_+	type 2 lantipeptide synthetase LanM	NA	NA	NA	NA
WP_012412980.1\|98535_98847_+	Nif11-like leader peptide family RiPP precursor	NA	NA	NA	NA
WP_012412981.1\|99143_100031_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012412982.1\|100209_101826_+\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA
WP_012412983.1\|101812_104071_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	1.2e-38	27.1
WP_012412984.1\|104328_107223_+\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	A0A1V0SE00	Indivirus	1.6e-16	27.6
WP_148220475.1\|107500_107680_+	hypothetical protein	NA	NA	NA	NA
WP_041566609.1\|108003_109422_+	hypothetical protein	NA	NA	NA	NA
WP_012412986.1\|109418_110765_+	DUF1822 family protein	NA	NA	NA	NA
WP_148220488.1\|111078_113172_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_012408090.1\|113337_114360_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012412988.1\|114447_116865_+	CHASE2 domain-containing protein	NA	NA	NA	NA
WP_012412989.1\|116861_117605_+	DUF928 domain-containing protein	NA	NA	NA	NA
WP_012412990.1\|118614_121707_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012412991.1\|121755_123201_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_012412992.1\|123223_129742_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_012412993.1\|129883_132049_+	S8 family serine peptidase	A0A217EQY2	Bacillus_phage	2.2e-18	25.6
WP_012412994.1\|132367_135580_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_012412995.1\|135697_137989_+	caspase family protein	A0A1V0SLK6	Klosneuvirus	2.8e-11	43.8
WP_012412996.1\|138341_139550_+	PstS family phosphate ABC transporter substrate-binding protein	A0A1D7SQC1	Cyanophage	7.7e-05	24.7
WP_012412997.1\|139578_140475_+	VWA domain-containing protein	NA	NA	NA	NA
WP_052304728.1\|140567_143897_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA
WP_012412999.1\|145777_146284_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_167315707.1\|146303_146567_+	hypothetical protein	NA	NA	NA	NA
WP_012413000.1\|147476_148064_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_012413001.1\|148536_151602_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012413002.1\|151681_154432_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012413003.1\|154487_158066_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_012413004.1\|158407_159088_-	hypothetical protein	NA	NA	NA	NA
WP_012413005.1\|159090_159558_-	hypothetical protein	NA	NA	NA	NA
WP_012413006.1\|159761_160184_-	four helix bundle protein	NA	NA	NA	NA
WP_012413007.1\|160269_161277_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	5.4e-12	26.7
WP_041566579.1\|161337_161652_-	hypothetical protein	NA	NA	NA	NA
WP_012413009.1\|161795_162131_-	XisI protein	NA	NA	NA	NA
WP_012413010.1\|162118_162532_-	XisH family protein	NA	NA	NA	NA
WP_012413011.1\|162594_163050_-	four helix bundle protein	NA	NA	NA	NA
163218:163277	attL	NA	NA	NA	NA
WP_012413012.1\|163649_164471_+\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
WP_012413013.1\|164492_166721_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_012413014.1\|166704_168381_+	ATP-binding protein	NA	NA	NA	NA
WP_012413015.1\|168384_169722_+	TniQ family protein	NA	NA	NA	NA
WP_167315708.1\|169976_170684_-	TniQ family protein	NA	NA	NA	NA
WP_041566580.1\|170655_171018_-	hypothetical protein	NA	NA	NA	NA
WP_012413016.1\|174026_176636_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
179494:179831	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NC_010632

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_010632_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010632_1

11298-11406

Orphan

A:N

Consensus_repeat	Method
ATAGGTAGGTGATTTTGACGACATCTCTGTGAGTGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010632_1

>merge|NC_010632|1|11298-11406|CRISPRCasFinder
ATAGGTAGGTGATTTTGACGACATCTCTGTGAGTGAGAATTTTTTCCGGCTAGGAGGCGATTCGGAAGATTCATAGGTAGGTGATTTTGACGACATCTCTGTGAGTGAG

>NC_010632|1|1|11298-11406|CRISPRCasFinder
ATAGGTAGGTGATTTTGACGACATCTCTGTGAGTGAG	AATTTTTTCCGGCTAGGAGGCGATTCGGAAGATTC
ATAGGTAGGTGATTTTGACGACATCTCTGTGAGTGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010632.1\|WP_012413168.1\|4063_4369_+\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_012413167.1\|3099_4050_+\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	unknown	unknown	gnl\|CDD\|274382
NC_010632.1\|WP_083782512.1\|4423_4672_+\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_012413172.1\|12744_13053_-\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_012413171.1\|12222_12555_+\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_012413176.1\|16094_16415_-\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_041566661.1\|12563_12752_-\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_167315722.1\|10967_11117_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|199908
NC_010632.1\|WP_012413165.1\|1453_2578_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NC_010632.1\|WP_012413170.1\|6077_10289_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223627
NC_010632.1\|WP_012413174.1\|15233_15599_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NC_010632.1\|WP_012413169.1\|4798_6007_-\|AIPR-family-protein	unknown	unknown	gnl\|CDD\|378452
NC_010632.1\|WP_012413173.1\|13384_14926_-\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_148220493.1\|13184_13388_+\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_012413175.1\|15637_16078_-\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_041566662.1\|14929_15217_-\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_041566698.1\|612_1452_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_010632.1\|WP_012413177.1\|16480_16993_-\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_083782511.1\|243_486_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010632.1\|WP_012413169.1\|4798_6007_-\|AIPR-family-protein	gnl\|CDD\|378452	pfam10592, AIPR, AIPR protein. This family of proteins was identified in as an abortive infection phage resistance protein often found in restriction modification system operons.	5.20047e-43
NC_010632.1\|WP_012413174.1\|15233_15599_-\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	4.89861e-51
NC_010632.1\|WP_041566698.1\|612_1452_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.45388e-42
NC_010632.1\|WP_167315722.1\|10967_11117_+\|hypothetical-protein	gnl\|CDD\|199908	cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40. Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding.	4.33644e-05
NC_010632.1\|WP_012413165.1\|1453_2578_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.01908e-23
NC_010632.1\|WP_012413167.1\|3099_4050_+\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	gnl\|CDD\|274382	TIGR02997, RNA_polymerase_sigma_subunit_sigma70/sigma32, RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393).	9.3553e-150
NC_010632.1\|WP_012413170.1\|6077_10289_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	2.62836e-115

>NC_010632.1|WP_167315722.1|10967_11117_+|hypothetical-protein
MADKQEIKCTYCFGKGKIEQPESIGSSPIPQYKTCSYCSGTGKIIKKKS
>NC_010632.1|WP_012413170.1|6077_10289_-|DEAD/DEAH-box-helicase
MTKLANDTTNLQTKLANQYFDLDSSVQKVIQLLAIIYAPVDKNSLLSCLSKMGALDEKNKLWVTKTLSPQIDKLLKVGLLVQSGRQSPECHPLLTEIATRHAVQTGQFEIQVIAVESKFPIRTHWNHDSRIFYSLRQCIREIRIGIYRQDLNFINKQIEDYQKYADSEEKLVIENIFEQIFNNPFDADGFNTLPQGLYESGISSIFLNCALKLSVSEDALMMLSEQCSTGGKHCSDYLHLILTEQLLLQGCTQEAQESLERVSNEYQNNAAIFWGWLSFLRGENEQAIKYYTDALKAIKKATGKRQIYFNTMGGLFFILALLKDGSAQRLKEAEEYTNLMSRQGDHWLRFIYGRLKTVLQVHQGDITQKQFVLSAHISSVEEENSLQTLFCSLCLYWMDAEGAKKRLPKLLEPLYQRSFASGYHWLAMETAELLSRLKPSSKYQKEAEALREDSNIQTIVDLIRPQEAWEMCLNALANLQKQPQTSLKPESQLRLAWFITFYPSKCVLQPKEQKVNAKGEWSKGRPIALKRLSSGLAEFDYVTPQDMRVCSCIEVYSEGYYGKVDYTFGEKAISALIGHPLVFWEDMPNIRVEIVKGEPELLVKKEKLGRLTLEFSPKLPESQNILHIKETPTRIKVIEITTEHRRIAQIIGKDNKLNVPAFAEKQVLAAINAVSGIVTVHSDIGGGSEGAEEVPAQTLPHIHLLPANVGLKITLLSRPFTQGGPYFRPGTGGETVIAEIEGKRFQTRRNLSLEKQLAADAVAACPTLAQSEEQDGEWVIVDPESCLELLLELQALGNKVVMAWPEGEKLHISHNADLKDFNLSIQRQQDWFAATGELKLNNDLVLDMQQLLELLEKTPSRFIPLGDGQFLALTQAFRKRLDELRMFSEKHNKGIRFHPLATLGLEDFVDEVGKVKADKHWKTHREHLHEVKNLQPELPSTLQAELRDYQMEGFCWLARLAHWGVGACLADQMGLGKTLQALAVILRNAHEGPTLIIAPTSVCMNWVSEAQKFAPTLNIIQFSGANRQKLLDGLQPLDMLVCSYGLLQQEEVAQMLSVVHWQTIVLDEAQAIKNMTTKRSQAAMNLKSNFKLLTTGTPIENHLGELWNLFRFINPGLLGSFESFNQRFAVPIEKYQDKLARNKLKKLIQPFLLRRTKNQVLEELPSRTEILLHVELSREEKAFYEALRRQAISKLTESDADAGKKHLQVLAEIMKLRRACCNPSLVMPDTVLPSSKLQLFGEVLGELLENRHKALVFSQFVDHLHIIRDYLEQQGINYQYLDGSTSVAERKKRVDAFQAGSGDVFLISLKAGGTGLNLTAADYVIHTDPWWNPAVEDQASDRAHRIGQQRPVTIYRLVAKDTIEEKIVQLHHQKRDLADSLLEGTDMSGKISTEALLQLISQG
>NC_010632.1|WP_012413169.1|4798_6007_-|AIPR-family-protein
MPKTWNLKIDSYFQAAPNCIIATAHVDTFPTDLPLEPNIREPNRKSATYRQIFDSVTTQPDKFFSRHSGITLCVNKIKPNKNKTELELEVLEASEGGSDGIINGGHTVLAFEQAKNYKYDLSQARVKVTIHIGLVEDEAKDIALASNTTTPVDSRSKVNARGDYKFIKQYLAQLEKAEDRKFRIAYYQNQSGAPRNAQCNVTHLLKLLYCLDRNKYNPDSNKRTKHPAGMSIPSQISDTERERLTALLPLLTHALWIEQRLYEIIQDHISNPRRKGVNDLASIDIRKTTLLPDSKYSFGFGAPTDLVLPIIASYRVFLDQDYKWILPFNEFAEDFLQHLWTNYFRKYLVSEKTAGNTVGTKISRNQDIWESLYISAQSYLNSSLVKMVNSGNQRQKLTLTSG
>NC_010632.1|WP_083782512.1|4423_4672_+|hypothetical-protein
MPSKTIDVREYTVRAHKREIHTRVFNFVCKQCEQPTQRETFGVRPLYCEKCRPPQAPKKSVVPIDKRKPRAMNYKSGKGIAG
>NC_010632.1|WP_012413168.1|4063_4369_+|hypothetical-protein
MSKTRYSKDWKQIATAVKDASNWRCTKCDRICLRPGEKPSELTLSQRRVYNLQVHHYNFDPSDNRKENLGCLCSGCHLHYHRFRRGNISPGQLSLFQLNDA
>NC_010632.1|WP_012413167.1|3099_4050_+|RNA-polymerase-sigma-factor,-RpoD/SigA-family
MLSPTTDSVRSYLKEIGRYPLLTPDQEITNARLVQQMMAVEEQRSNLALQLNRQPTDLELATSLGQNEAELQSVIQQGQKAKQKMVTANLRLVVSVAKKYQNYSLDFLDLLQEGALGLQRGIEKFDPNKGYKLSTYVYWWITQSITRAVADKSRTIRLPIHINEKLNKIRRVQQQLSQSLGRPPVVAEIAESLNLSPNQIREYLQISKPLVSLEKRVGDEGESELADILPMDGISLDEQITLESLQQDLAKLLALLKPRQREVLTLRFGLSDNQQLTLSQVAKRLNLSRETIRKTEHLALSILRSHQNKIKDYLLN
>NC_010632.1|WP_012413165.1|1453_2578_+|ParB/RepB/Spo0J-family-partition-protein
MARSKVDLTKMFSTAAQMSDAEVEINKLQVEVERLRALQAPELEAQIAALREQLTMQSGQQEIDITLICPNPEQPRKTFSAQSINSMARTLEKDGQLQPVILITQGSGFDLFDGERRWRAGMQLNWKTLKSVVMPRPQDLHRKALLTTLYREDLNPLDKAEALLKEISEQTEVNLAEAPRILATAVRRLEYQKRMKQVGELIGESDEKQNQVLNDLDLNDAEKQIFKVLLDLGLNPASVTANDFRMLSLFPDLQAAIRDSNLKAAHAMVLQRLSAKKLEVDEKKVVKIRVETTQKVVEQNLTLLETQELVNQIISNNAPKPASDPNDKQVKNIMRGLKELSVDKIERSNLKKFHQSLQQKLKEIEAVLQADDYS
>NC_010632.1|WP_041566698.1|612_1452_+|ParA-family-protein
MPKTENQKVVLAILSNAGGSGKTTLATHLAYELANRKVGRRTCSVGLIDLDPQGSLSLFCGLEKPSDPEQSVSAVLSDNFSGNWPFVSCWSKYKLKVEVCQSIQQPLLKTADDLVNHPRGPYLLADSLKDYPVEHDFIIIDCPATLGRLNLAALAASTHILIPIQLEPKSASGASELLQFYFIECRRLRLDPYPQIMGIVPNQYRADQAIHNEILAQMPTIIQQLQLKNAHCYPEIRFSYEFSNASGAGLPLHLYRKRHPACKDFAKLSSDLSAIIGAK
>NC_010632.1|WP_083782511.1|243_486_+|hypothetical-protein
MATKEIFVKEYTVKAHKRQIHTRLFNFVCCKQCDQPTSRETYAPCPLYCETCRPPAPPKKSLVEPEKKGKPRPMTYKSDK
>NC_010632.1|WP_012413171.1|12222_12555_+|hypothetical-protein
MTLFKLVFELIADLFLRYRQWYRRICGGTWHYVVVYLCKETYDWHEDSILKPLYYWHNEDILDPSEIELQTEDWGEKRFECMAKVETRDVQTLHESTYNSSVYGRSFNED
>NC_010632.1|WP_041566661.1|12563_12752_-|hypothetical-protein
MYNQYDDLSFSEQLHLTEEEIRRRHNQQMFLRRNAQLYVICNYYDLAVLFSSQEIFHKVLEV
>NC_010632.1|WP_012413172.1|12744_13053_-|hypothetical-protein
MIKLLIKYAPDSVVDALNDISLAELDKRGLIVWTDAQPLEPEDENSAFNLAIQFQNVTPDNIPFILQAIAQIYTNYGDCLALKYLMELSAEYFSFIGVHEDV
>NC_010632.1|WP_148220493.1|13184_13388_+|hypothetical-protein
MTTVARRKCRLTNDVIAVVSVMDFFAFSSQTNYTIIVGFPVSDAYGGLHQRYLLPILLGITISSVPV
>NC_010632.1|WP_012413173.1|13384_14926_-|hypothetical-protein
MGFELERLTASSVIHAERTILCSLGASAVLCLSAPFFLNTDRITTGILLGAGTISAGLFGVSAQISESKEKVYKSLLEADLKALKQHLQGQAAYNYVTTAIDAKRRVADYVNRLPITERPRWIAEYQLQGLVTLPEPPAQHQPSRTGIPNPDIADIDEEFVQSIINPGAMKVLQAIAANYPEYIRIDSAWIDELCDAASNQNMTLRSNHHFYLSGGTQSGKSTLAGVIINKIGAKSQTPAIVIGSDPKDDVTRWLCKFSRKFDGMKALRDWITFATDQIDKQKARVSIVGGECHGVPELFLAQDEVDSVYGGGKGLPGMVDADTAKDLQGFWNYIIKFTAGLKGHGVFMGQSPLSGETGFSRPSLKNVCFIAVGQTSSYILDHPQDFLNVKKEILEILRQACEMLDKAGVRYALVIPTRGNPFVALIPEFDIKGLEQKQDSKPNNDTVNSSKNNQQSSQQQVDWYEEIRKWATELGRRPHFQEIKQKWHELTGQELNEKGVTLLLENLGFHDN
>NC_010632.1|WP_041566662.1|14929_15217_-|hypothetical-protein
MQIKLFHIGYAVCGVGFSMFMGYLSVASPVSKYILWFIGIISICCIFLGLFNFGGLVVKGFGFNRKTFTIGLMPGVIFLFAFLTLVCAGVALGVR
>NC_010632.1|WP_012413174.1|15233_15599_-|four-helix-bundle-protein
MRQPARTFQDLIVWQKAHRFVLSVYRITNEFPKSEIYGLTSQFRRAAISIPANIAEGFKKKGLADKAKFMNIAQGSLEECRYYLILSSDLKYGDMSELMLLLEEVSKLLTSYSNSILTPGS
>NC_010632.1|WP_012413175.1|15637_16078_-|hypothetical-protein
MLGKWLPGLFGGKGDGVVSTDLRVGDATQIEGNLPSSIRDRYTLPAYTTAQQVLDEAEVAGNLKAQKWLHTKFSRHKLKQLQSLAEMYKNQLAYSQEAMKVEEDLQRTRGLHGEAVIRHAFGSIEQQRQLGGYEKAFDEVGDSFRF
>NC_010632.1|WP_012413176.1|16094_16415_-|hypothetical-protein
MEQQDQTHRKALNIHLKKDGELNLSGLTLENLTTEEFLVVQQLIDESKVRSQSNRQIEELMQRGMMAQTAIAAFTVLMFSFMGIYGITRYIGSQVQQVQQTYTNFK
>NC_010632.1|WP_012413177.1|16480_16993_-|hypothetical-protein
MNDLQELLIANGIEMSSEELRLYLQNKSVDPDAITEAEIIAISDELVALKKASNLIVSSNGKTAKTTKRTAKTNKAQQSMSDYKTSLANQAKQSLAEIQSFNSAITQGTREFAHKEAVETIETLANVSNEYLAEVAQFAKEFQGEPEAFFRFGQEITSLYLSASNADATE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_010632_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010632_2

230064-230164

Orphan

A:N

Consensus_repeat	Method
GTGCAAAATAGCAGACATTTTGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010632_2

>merge|NC_010632|2|230064-230164|CRISPRCasFinder
GTGCAAAATAGCAGACATTTTGTACCTGATTATGAACATTTGATGACAGATATAGCAGTTAAAGGCGTGTATAAGCGGTGCAAAATAGCAGACATTTTGTA

>NC_010632|2|2|230064-230164|CRISPRCasFinder
GTGCAAAATAGCAGACATTTTGTA	CCTGATTATGAACATTTGATGACAGATATAGCAGTTAAAGGCGTGTATAAGCG
GTGCAAAATAGCAGACATTTTGTA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010632.1\|WP_012413343.1\|236019_241200_+\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_012413337.1\|225979_227602_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223540
NC_010632.1\|WP_012413341.1\|234771_235146_+\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_083782459.1\|232287_233568_-\|ISNCY-family-transposase	unknown	unknown	unknown
NC_010632.1\|WP_012413344.1\|241249_242014_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NC_010632.1\|WP_012406904.1\|224931_225825_+\|transposase-family-protein	unknown	unknown	gnl\|CDD\|372577
NC_010632.1\|WP_012413340.1\|234163_234574_+\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_167315727.1\|233688_233880_+\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_012413339.1\|230503_231004_+\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_041566694.1\|219268_219511_-\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_012413338.1\|227709_229416_-\|plasmid-recombination-protein	unknown	unknown	gnl\|CDD\|366451
NC_010632.1\|WP_148220504.1\|222054_222741_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379223
NC_010632.1\|WP_148220518.1\|235440_235944_-\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_167315728.1\|235198_235360_+\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_012413333.1\|221259_221868_-\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_052304751.1\|231006_232236_+\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NC_010632.1\|WP_012413336.1\|223976_224303_-\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_012413331.1\|219494_220259_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|214643
NC_010632.1\|WP_012413329.1\|218489_219272_+\|hypothetical-protein	unknown	unknown	unknown
NC_010632.1\|WP_012413332.1\|220516_221170_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
NC_010632.1\|WP_012413337.1\|225979_227602_-\|ATP-binding-protein	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	5.0596e-66
NC_010632.1\|WP_148220504.1\|222054_222741_-\|hypothetical-protein	gnl\|CDD\|379223	pfam13500, AAA_26, AAA domain. This domain is found in a number of proteins involved in cofactor biosynthesis such as dethiobiotin synthase and cobyric acid synthase. This domain contains a P-loop motif.	0.0048745
NC_010632.1\|WP_012413332.1\|220516_221170_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.07041e-59
NC_010632.1\|WP_052304751.1\|231006_232236_+\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	9.75397e-23
NC_010632.1\|WP_012406904.1\|224931_225825_+\|transposase-family-protein	gnl\|CDD\|372577	pfam13359, DDE_Tnp_4, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.34968e-24
NC_010632.1\|WP_012413331.1\|219494_220259_-\|sensor-histidine-kinase	gnl\|CDD\|214643	smart00387, HATPase_c, Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.	4.2823e-30
NC_010632.1\|WP_012413344.1\|241249_242014_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.57906e-17
NC_010632.1\|WP_012413338.1\|227709_229416_-\|plasmid-recombination-protein	gnl\|CDD\|366451	pfam01076, Mob_Pre, Plasmid recombination enzyme. With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation).	2.31767e-35

>NC_010632.1|WP_012413338.1|227709_229416_-|plasmid-recombination-protein
MAYAIARLKKLKRGNISGSASHTARERETPNADPTQKNIRFIGSLNPEERLEDLVLAKIGDSEQKRKIRTDAVYCVELLLSASPSYFRPDCPTQAGYYEPQKLDDWLEATHQWLADEYGNRIVRAELHLDEATPHIHAYFVPLDDEGQLRCNHFFDGRQKIHEFQNSYYQTMRLIELERGIKGSRAKHQDIKDFYRIVEEGRDLEVDELSAAQLKAKAADRDRANQRKEEMEATAKALALDNEQLRRRIEQLEQDNQSIKKLTEWSTDLALDDVAWELGLWRKGNEWVGGNHIINIDASQFTDFGNGSSLTGNSAIDLVKHVNQCNQTTAIAWIGERFGEAGGQRAAIAHAQKVAADIIQTQPAPQFTLPVEDKANWSVVEHYLKQKRGIPSDCVQMLHNQGLVYADSKANVVFVMRDLNGKTKGAFLEGAANNFSGYELGTVRRDSWFYFTLGKKPSEQTSTVVLSDSPIDTISVAMLEYQVKGIPENRTVYMAVDDTSNLPVERLRNVPYVQVAFSQPTVARAVKELLPHSTQLKCESRDWNTQLITFSHQLQQRYSQQNHEELEL
>NC_010632.1|WP_012413337.1|225979_227602_-|ATP-binding-protein
MSNELIKQIFGLIKLNNKLIAVESPLQERVKLLTNLASECQRLDINCYLWTLEDDALQQLSTNEEGLSLQRVDQYQAIAKSRREHYFEILRFWKTTDLSGILILEGIFPWLGESTTDPDFFLTSEWIKSALINLKLYNCNANKTAILLGSNATVSSDIAPEVPTIVQQLPAIEEISSYLAQVLPDYSRSDIHATANASIGMYLADIGYGIRQAIANHEITPDELVEKLSAYKIELFKRIYNIQFLQPPSTPIGGLELIQQAFKTYKRLLSSLAKAYNLRLPKGILLIGPPGTGKSYSAKASSAQLGLPLIILEWGSFRSYGNLAEYKLKNLLALVDRINRVILYLDDFDKGFAGDDDLSKRLAGMLLTWMQERTSEVLIIASANNIQWLPPELTRSGRFDEIFKVDLPNYGERHSIFKIHLAKFDPRFRNGGDGYTEEEWKRLLKATQRCVGAEIQAIVERAAVSTFCEMFGDDVSPLQQLPSLEITLSALLAARQSMNPLAIREADRVESMRNIAALHGLPSSPIDSSIYSLGNVDIFG
>NC_010632.1|WP_012406904.1|224931_225825_+|transposase-family-protein
MLNIEGALKQDRLLRALTGLNRKAFDALLPTFTTMYLDTQQAKPRQRGLGGGRKARLLTAQDKLFFILFYFKCYPTFDVAGLLFDMHRSQAHEWMHRLQPILEAALGQKMALPERHLESIEAFLSRFPGVQRVMIDGTERPIARPQEREQQQQNYSGKKKRHTRKHLAAVDETKRVLILSKAREGKLHDKRFHDEDDIAGSVPDEIPIEVDSGFQGLQKQYDNLHLPHKKPKGGKLSDLQKTENRQLSQSRVVCENAFAGVKRYNAASVIYRNRIENFDDHLMLTAAGLWNFYLMAA
>NC_010632.1|WP_012413336.1|223976_224303_-|hypothetical-protein
MGRVWTYWEFDHPLGSTVRVISTPLGLEIFAEDVFNVVAAELNNEKVILMNIHSQERYVVIEEEVVKIKTLNFTAINSLKTIVKADLINKFVHWVRIKIRPIFQRQYL
>NC_010632.1|WP_148220504.1|222054_222741_-|hypothetical-protein
MIITVGDARVGKSTVIKLLLEIFAQQGKRIKVYNQESFPVFQAYEHIATIKKFNLSNDDADAITDDLNHPELDVMIVDMPGQDIEKVIQYIESASLFEVVVKFGWNLTFLQPISHRKDCIYYLNAIIQNATNNANYVVVKNYHFAPEFREYEEKMRKKLLIIGGTEVELMALHRNHYQAMEKADKPYSQVCQDLSIILFWRSFIFQWIKKFHHSVMNNHLAIKYLGLD
>NC_010632.1|WP_012413333.1|221259_221868_-|hypothetical-protein
MRVQDTLQGYSPSEQKRIVEGAYKLGITPDDPVFRMMATLGRYEETIIDLQARMEAMIEAWAALIDQKLDKTSKQAESMHYTVVSNAVRDEIKKIKPTGTGMKVQAGWGLGTVSLVCGLVAAGSTLLGSLTTWNLVQNIGTNQSVVVSRNEIKILQWAKSQEGKQMYQIILKNQAAIEACQTQQSKTQGYCLIQVSNTNSPK
>NC_010632.1|WP_012413332.1|220516_221170_+|response-regulator-transcription-factor
MIRLTLIEDEELIRLGITTAINQQPDMEMVGVARSGIEGINLVKELNPDVILVDIGLPDISGLEVIKEVKINSKTKIVVLSSHSSQGTVQSALNAGADSYILKKNNVPLILEAIKTTFYDNKSFFDPDISRHNFLFQQKIKGKTYQDHLSATEMQIISLMADGSSNKLIAERLFITESTVKGHINKIFAKLDVKDRVNALIEASKLGYIEQDYLKVG
>NC_010632.1|WP_012413331.1|219494_220259_-|sensor-histidine-kinase
MQQEVLSKQLDLSALLHDVSNSFKGASLIVNQLIDGAYGYSLEEIRPFLIALRDTNDRGMSLVEANRVSQEAKPVTVAQFDMLSFLQTTYSLFKPIAQYHSLNLHYETQSSYKHGTQVQGDSISIDRMLCNLVTNAIKYTLAGDIFLRLLNQEDDLAIEIEDTGCGIAAEQLSNIFIPLWRAPNSNLLHQSGMGLGLYIALCVAHAHGLKISVNSVAKQGTKFTIIFPYKDDGIYGLDGRMLPKSQRLQDALSI
>NC_010632.1|WP_041566694.1|219268_219511_-|hypothetical-protein
MRYLSDVKLWDRIETGVEFLIFAALMIAAIIKLGHNDFLQALFYIVLAVIISPWSQFERVMKRYVLVSAYILGLFVGYFS
>NC_010632.1|WP_012413329.1|218489_219272_+|hypothetical-protein
MQSSSVAQTITTINRNSGFSDNQMAYRLALMMEKYPLSQSIHSTPALDPIQRENIIGEVRNTLSLTQNAESTEDYRQSLKEKYRQEYAQKFGLNKSEETPDIDNSTRVEDLINEKKKTFLQQILETKGRKLPFVDSQQSKSVESDFDQVAKKSLIPALMNIIVTKGQDTIGGRVYEGMAYQLNLLMREGMQRLTVWRKSDNQSAFSAYKVDTKEEYKVIHNHLSPQETQKLINFDIRVQQQQLPSQQQQNEPSPDGPELD
>NC_010632.1|WP_012413339.1|230503_231004_+|hypothetical-protein
MNDSRYRVVSFRRPSDSADAEVIDYLRSKPLNLKEDYSETITSTLKKHWLPLALFSSGLRGEELRQIGIWAISQLEAQISMIRRTCGIAPDPLVVTSNISMQASNIVASDSLSVLGITSGDGQISSTDEEDEDHEDDDDDEFLSSQNFQEMTDIKRMFGWNNQNGG
>NC_010632.1|WP_052304751.1|231006_232236_+|ParM/StbA-family-protein
MNKKNNSKDYTKVAITIDLGTSFQKGIAQIYPDGVPIVLAMEPEIADLGVESIEYLSNQLVQDTTVWIGIGEEYYVLGALAKSMFAGTSAIRDLKYQYALPKVAAMLWLAIRRLGVKNPDIELYVHLLLPVGEASDGQTLRAKLAQNLKTGIITPTGRLKAKLRSFDVSPEGAGIMAYRSRNVNINYFQKSIGMLMLGYRNASFILSHKGNAIKAESTDLGMNWVVHQFVERTAVGLSKDDLRLISALAETTNNNFDALRFLSRKTKIEEINADVELFCRILPIVRKEYCRALWRWLRNIAQMDEILVCGGTASFIRQELTEHFDGEGIPICWNGGMELPKYLDTMGLGDRIAAILIMRMVINMLRAKLTDEAWETLRILLNDKFELGVATSNRFLDTMNYQVIHGNSS
>NC_010632.1|WP_083782459.1|232287_233568_-|ISNCY-family-transposase
MVQYFQSILKDLPDKRTGKNKRYQMSDAALSAFSIFFTQSPSFLAHQRSMAHSKGHNNAQSLFGVHQIPSDNHIRDLLDEIEPTVVFPVFTKIFKALENGKHLSKFRSFKNNLLIALDGTEYFCSNEIHCEHCSSRTFKNGTTQYFHTVVTPVIVCPSNSQVIPLIPEFVVPQDGYQKQDCENAAAKRWIQKYAKQYASLGITILGDDLYCHQPLCELLLQEKLNFILVCRSKSHKTLYEWLEGMPLDTFSVKHWKGKVYEIYTYRYVNQIPLRNSEDALLVNWCELAITRSDGTIIYKNTFATNHRITDINVEAIVSDGRSRWKIENENNNTLKTKGYNLEHNFGHGKTHLSSLLATFNILAFLFHTLLDIIDEKYQFIRQHLPTRKTFFDDLRALTRYLYFDSWESLLNFMIHGLELEFHPNTS
>NC_010632.1|WP_167315727.1|233688_233880_+|hypothetical-protein
MMRIADRIADAWASHISHIKFLDHELSYDRQDKPLVPDYYVQPFKSSKPDMEIWQRNGYITTS
>NC_010632.1|WP_012413340.1|234163_234574_+|hypothetical-protein
MAETTHLQVQELSRFAQEQDFNQQYRQYFGDVWDEVGVRDISKMTIQDAEQTLKVLADSEASPQFIKSLLAQAAIDGASPQVLEYFLASDIDSDGRTLAQELFQDGTNPLQPDIPQAPPKAQVLSPSPTEDLDWEI
>NC_010632.1|WP_012413341.1|234771_235146_+|hypothetical-protein
MTILGINRPLDTTQAKLWDERDLSTSDRRREHLEILLCQKVQIGEDPALCKQVLNYLYFSAFQQNLNRITVQKEKEKSVFASVQQVIITSFAILGMFAFLAAASNKSVVRSSGVIPPAIERQAN
>NC_010632.1|WP_167315728.1|235198_235360_+|hypothetical-protein
MWAEVARERSAFNSLHILIITPFAILRRIAFFNGAFRSIKPSAAANLPAVQAH
>NC_010632.1|WP_148220518.1|235440_235944_-|hypothetical-protein
MNRKEFNSDGTLKDEVRQQKISTGSNPAAVDDYARRLKEEYDEWKHLDETDPEPWPVYTAYDFFTPTEKTQFNPDGSLKQEYFESELKKGKSLGWLEEMERRKKIDVDNYNRVSAKHAEMGINFGQQEMQERIGASRTYVQRRQQMEQDLRNFEPEDSLPFDKDTAY
>NC_010632.1|WP_012413343.1|236019_241200_+|hypothetical-protein
MTLEFKHFDTRINQWIHDDGDKNNPDSILTEKIDNTLLESYFPDQEFSFGHIDEYSKAEDLQNHPEGHILLLSSKTRLLYGSPECLEVIDKLCPDRKDRGAYGSIFLGGCKNSINEKLNILIVNDITGENGGFIKDEDAFKLVGDCYGQISTKLYDRLTQTEQQQNKDYHVIQHRFGWTETDGEDNQYRFGKGTLRPYKLDKVEYLDPKIKSKIDLIIPISSFKGTDKDNPNGASKPQIKPGLYQQKIWLGEKSQSERGQTAISQLLASFPQGIKDFAEELEAQAQKLAENQDDPRIVAQLYCEKYEKRKALTESQKASLSKQITKQAGDGSLAKQLELVTSNDADGEYEIIDENNESPKDNLLMYKLIKADLVGGHNQLLETEKIKQELSRFVQSEWRDIASGRTLIFDRGMIIPSKELKNGEICVPWMDDGEKVLNFRSPFLNSNGLCISTNKLVDDRLAPDGVNLKGIIVVNDEDHKRILARLKTNEIAPIETESERQARDFDGDCIGVALASKYPNLTAEAEQRNLPKNAYSPTVKLKKQSFYLENGTQPPFEKIAIHMSDSISVGIINNQVTALEALESEIEVLKTYGTFEQKSNYLDQVSNHYETLFEQERQKDPKLIREEYKPYMQGVVEIAHSQRTPEIIQQAMDINRQMYRSMIEEGCYQNQIAVDLFKSAKKPEMDKIRENSRYLYRDVNYIKDKKSPSVYLNTGITPKGYSPVELLISQTNKYFQESQLESRPIVQFKDLFKGVEFTPQQKFAAIAAKYEFDLKFNAAVRASRRRETESGPSAVVQTDSGTQLEITNLTRYGHPLIWKAQTLNIRLDEIKFTNSERPHKLLAVAQIDGEIGENGKPAYRNLGTVSQQSVTDHNLKSGMTMQGAKLLELKPELTRSQTKLLFDKAQEAALAFYASIPESEKLASAAAAWNICASRQDELEVARKENANPQAIAKKVSNFAFAAFPNEIISRLEKLQFSEPKLVTLNNEANQFLGRKWNPEEKHPIEIRASHHPPGHERHVSRLMFVQDADGEYKEFAMLETRGGMLPIGSKAQANFIGVEPATAKSSIGLPGNESVEITIRELKNFSYAGLVFNAEPVNLEFGTVPIPDKTVKIKIDALTLGELDSDSVQQLKQIDYLKNGNPLKLKLTSISETGDQAFVLGESPNGNLLKINKINFYDFSGQTFDDLDYRKLTIQTSASKTRDAVFLNGEPLGVLHFKKDKDALRQLGLLKPKQVTPAPAIIESNFSVICAQIDPNTVEYPQKWTKEFQAFGTQSVNFEQQEMIESSANILHHIKERPTFLFSTESNKKLGVMGLAVDNQKVDTVTKWLTAQNVKFSLAPTEDVIRETKKGLAVFNLVDSSIPAKTLESMAKKFGAVIETDSEYQQRVNSLATRPQFLKPPSQSALFPPQQSAQFHPNQEVQNIAPPVIKGKPIPMNYPLMMHGDTNPILVDTCIDAMRGYGRTHTTRAYQPYKQYGFKEGDIALATGIDKQVAFRVGKQYQITPSMIADPVYQQQWADMEKHSPKALPELFTEKQQVWGLHIEPLGDYVEGFIVPFPEPQNRAALEATVQTQSVTIDDLRNWYNAADKLGKSENYKKRIVEVANQFKAGEQLSAEALTVMNKDKFELEAISRLTQIAQRIGMVWGKSDENGTKVQGKIYDLAFNTQQRDLTILQKNGEVVLNLQSGKVQTNKVTPQILQTFEDANTQIDQILAKSQTQKTDLQR
>NC_010632.1|WP_012413344.1|241249_242014_+|tetratricopeptide-repeat-protein
METANLEQAQVSYNQGLAHLKSGNLDAVIECFREALLLNPNFAEVHNTIGMIQFQIEKYEGAIQLFDNALSMNPNFAEAYNNRGLARSKICHKSEFPKVIEDYTKAIALNPNLVQAYINRADTYKNLTGDNPAAILDYSQVISLDPNCLSAYINRANIYFLSGELEKSLSDLEKVLSLDTDCAEAYCGRGTVRFYLGDVEGAKKDLFKAFDLYKARGNMVYCAFTRSLIMELFRDFEVYKDLFGVESEIAKSKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010632_1	1.1\|11335\|35\|NC_010632\|CRISPRCasFinder	11335-11369	35	NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	11335-11369	0	1.0
NC_010632_2	2.1\|230088\|53\|NC_010632\|CRISPRCasFinder	230088-230140	53	NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	230088-230140	0	1.0

1. spacer 1.1|11335|35|NC_010632|CRISPRCasFinder matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 0, identity: 1.0

aattttttccggctaggaggcgattcggaagattc	CRISPR spacer
aattttttccggctaggaggcgattcggaagattc	Protospacer
***********************************

2. spacer 2.1|230088|53|NC_010632|CRISPRCasFinder matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 0, identity: 1.0

cctgattatgaacatttgatgacagatatagcagttaaaggcgtgtataagcg	CRISPR spacer
cctgattatgaacatttgatgacagatatagcagttaaaggcgtgtataagcg	Protospacer
*****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

29523 : 83190

Lysinibacillus_phage(12.5%)

bacteriocin,transposase,integrase

attL 68631:68679|attR 73406:73454

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012407279.1\|29523_30750_+\|transposase	ISL3 family transposase	A0A2D1GQC1	Lysinibacillus_phage	1.5e-24	27.1
WP_012413195.1\|30726_33357_-	AAA family ATPase	NA	NA	NA	NA
WP_012413196.1\|33356_33689_-	hypothetical protein	NA	NA	NA	NA
WP_148220509.1\|33811_33955_-	hypothetical protein	NA	NA	NA	NA
WP_193372293.1\|34062_35241_+	hypothetical protein	NA	NA	NA	NA
WP_012413198.1\|35230_35848_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012413199.1\|36357_37227_-	hypothetical protein	NA	NA	NA	NA
WP_012413200.1\|37548_37968_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012413201.1\|38119_39532_+	cache and HAMP domain-containing protein	NA	NA	NA	NA
WP_012413202.1\|39630_40419_+	MinD/ParA family protein	NA	NA	NA	NA
WP_041566667.1\|40460_41651_+	hypothetical protein	NA	NA	NA	NA
WP_012413204.1\|41774_42869_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_041566668.1\|42984_43182_+	DUF2281 domain-containing protein	NA	NA	NA	NA
WP_012413205.1\|43166_43679_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_012413206.1\|43732_44161_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_041566669.1\|44153_44408_-	hypothetical protein	NA	NA	NA	NA
WP_012413208.1\|44865_45054_+	type A2 lantipeptide	NA	NA	NA	NA
WP_012413209.1\|45266_45500_+	type A2 lantipeptide	NA	NA	NA	NA
WP_012413210.1\|45755_46817_+	radical SAM protein	NA	NA	NA	NA
WP_012413211.1\|46956_48402_+\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA
WP_012413212.1\|48388_50632_+\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	3.5e-35	26.5
WP_012413213.1\|50689_53581_+\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	A0A1V0SE00	Indivirus	1.2e-16	26.5
WP_012413214.1\|53688_54249_-	WGR domain-containing protein	NA	NA	NA	NA
WP_012413215.1\|54262_54610_-	hypothetical protein	NA	NA	NA	NA
WP_012413216.1\|54704_56327_-	AAA family ATPase	U5XGM6	Phormidium_phage	9.9e-56	35.4
WP_167315723.1\|56365_56599_+	hypothetical protein	NA	NA	NA	NA
WP_012413217.1\|56661_56874_-	DUF2997 domain-containing protein	NA	NA	NA	NA
WP_012413218.1\|56876_57326_-	DUF1257 domain-containing protein	NA	NA	NA	NA
WP_012413219.1\|57440_58514_-	hypothetical protein	NA	NA	NA	NA
WP_012413220.1\|58682_58952_-	hypothetical protein	NA	NA	NA	NA
WP_012413221.1\|59134_59506_-	four helix bundle protein	NA	NA	NA	NA
WP_012413222.1\|59665_59938_-	hypothetical protein	NA	NA	NA	NA
WP_012413223.1\|60037_60592_-	hypothetical protein	NA	NA	NA	NA
WP_012413224.1\|60726_61620_-	hypothetical protein	NA	NA	NA	NA
WP_012413225.1\|61698_62499_-	hypothetical protein	NA	NA	NA	NA
WP_012413226.1\|62886_63231_+	hypothetical protein	NA	NA	NA	NA
WP_148220495.1\|63705_63996_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_167315724.1\|64054_64198_-	hypothetical protein	NA	NA	NA	NA
WP_083782513.1\|65432_65939_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.8e-09	31.4
WP_012413233.1\|66193_66382_+	hypothetical protein	NA	NA	NA	NA
WP_012413234.1\|66402_66909_-	hypothetical protein	NA	NA	NA	NA
WP_083782514.1\|67382_68669_+	deoxyribodipyrimidine photo-lyase	A0A1V0S949	Catovirus	1.9e-25	28.6
68631:68679	attL	NA	NA	NA	NA
WP_012407621.1\|71913_72828_-\|integrase	tyrosine-type recombinase/integrase	A0A1U9WS15	Gordonia_phage	3.1e-06	24.7
WP_012407622.1\|72905_73373_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_148220511.1\|73820_74108_-	nitrogenase	NA	NA	NA	NA
73406:73454	attR	NA	NA	NA	NA
WP_012413236.1\|74528_74804_-	HU family DNA-binding protein	A3E2K9	Sodalis_phage	4.0e-18	56.2
WP_041566674.1\|75087_75378_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_012413237.1\|75431_76106_+	type 1 glutamine amidotransferase domain-containing protein	NA	NA	NA	NA
WP_083782459.1\|81909_83190_+\|transposase	ISNCY family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

119728 : 157808

Bacillus_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052304744.1\|119728_120361_+\|transposase	transposase	NA	NA	NA	NA
WP_167315721.1\|120909_121170_+	hypothetical protein	NA	NA	NA	NA
WP_193372292.1\|121327_121504_-	hypothetical protein	NA	NA	NA	NA
WP_012408090.1\|121638_122661_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012413268.1\|123693_124341_-	hypothetical protein	NA	NA	NA	NA
WP_012413270.1\|125139_125307_-	hypothetical protein	NA	NA	NA	NA
WP_012413271.1\|125443_126613_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_041566681.1\|127613_127814_+	hypothetical protein	NA	NA	NA	NA
WP_083782515.1\|127816_128098_+	DUF1392 family protein	NA	NA	NA	NA
WP_012413273.1\|129144_129564_-	response regulator	NA	NA	NA	NA
WP_012413274.1\|131440_135703_+	alkaline phosphatase family protein	NA	NA	NA	NA
WP_012413275.1\|135776_135938_-	hypothetical protein	NA	NA	NA	NA
WP_012413276.1\|136194_136506_+	hypothetical protein	NA	NA	NA	NA
WP_083782521.1\|137159_138359_+	MFS transporter	NA	NA	NA	NA
WP_041566721.1\|138497_139241_+	membrane protein	NA	NA	NA	NA
WP_012413279.1\|139300_139987_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.0e-30	33.6
WP_012413280.1\|139990_141235_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.0e-23	33.8
WP_012413281.1\|141231_141675_-	DUF2127 domain-containing protein	NA	NA	NA	NA
WP_148220514.1\|141979_143272_-\|transposase	IS701-like element ISNpu6 family transposase	NA	NA	NA	NA
WP_148220499.1\|143326_144334_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_041566723.1\|144509_144938_-	DUF2141 domain-containing protein	NA	NA	NA	NA
WP_167315725.1\|145079_145277_+	hypothetical protein	NA	NA	NA	NA
WP_148220515.1\|145710_146718_+	sensor histidine kinase	NA	NA	NA	NA
WP_012413284.1\|146714_147347_+	response regulator transcription factor	NA	NA	NA	NA
WP_167315726.1\|147721_148102_-\|transposase	transposase	NA	NA	NA	NA
WP_012413285.1\|148788_149262_+	DUF2808 domain-containing protein	NA	NA	NA	NA
WP_012413286.1\|149334_150678_+	TolC family protein	NA	NA	NA	NA
WP_041566687.1\|150709_152074_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012413288.1\|152070_155112_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	2.2e-93	26.9
WP_052304746.1\|156267_156666_-	hypothetical protein	NA	NA	NA	NA
WP_012413290.1\|156779_157808_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

170796 : 233568

Bacillus_phage(25.0%)

transposase,integrase

attL 174334:174369|attR 221180:221215

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012413301.1\|170796_171621_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_148220501.1\|171655_171850_+	hypothetical protein	NA	NA	NA	NA
WP_012413302.1\|171997_172285_+	hypothetical protein	NA	NA	NA	NA
WP_148220502.1\|172665_173682_+\|integrase	site-specific integrase	A0A1B1P7C7	Bacillus_phage	4.6e-11	25.7
WP_012413304.1\|173685_174153_+	hypothetical protein	NA	NA	NA	NA
174334:174369	attL	NA	NA	NA	NA
WP_083782459.1\|174969_176250_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_041566728.1\|176439_176703_+	hypothetical protein	NA	NA	NA	NA
WP_012413305.1\|176808_178185_-	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	1.9e-44	27.6
WP_012413306.1\|178735_181216_+	filamentous hemagglutinin N-terminal domain-containing protein	NA	NA	NA	NA
WP_012413307.1\|181219_182917_+	ShlB/FhaC/HecB family hemolysin secretion/activation protein	NA	NA	NA	NA
WP_041566730.1\|182948_185393_+	CHAT domain-containing protein	NA	NA	NA	NA
WP_012413309.1\|185359_186379_-	hypothetical protein	NA	NA	NA	NA
WP_012413310.1\|186429_188295_-	protein kinase	A0A2I2L4J2	Orpheovirus	6.5e-11	35.0
WP_012413311.1\|188695_190201_+	NACHT domain-containing protein	NA	NA	NA	NA
WP_148220516.1\|191096_194816_+	DUF3854 domain-containing protein	A0A1Q1PNZ8	Noumeavirus	7.6e-11	22.9
WP_012413313.1\|194926_195856_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012413314.1\|196452_198570_-	AAA family ATPase	U5J9B0	Bacillus_phage	5.1e-52	28.6
WP_148220503.1\|198846_199128_+	hypothetical protein	NA	NA	NA	NA
WP_012413315.1\|199524_200202_-	hypothetical protein	NA	NA	NA	NA
WP_012413316.1\|201185_201779_+	hypothetical protein	NA	NA	NA	NA
WP_012413317.1\|201862_202165_+	hypothetical protein	NA	NA	NA	NA
WP_012413318.1\|202204_205024_+	hypothetical protein	NA	NA	NA	NA
WP_012413319.1\|205025_205745_+	hypothetical protein	NA	NA	NA	NA
WP_012413320.1\|205864_206965_+	hypothetical protein	NA	NA	NA	NA
WP_012413321.1\|207138_207930_+	hypothetical protein	NA	NA	NA	NA
WP_012413322.1\|207926_209492_+	TrbI/VirB10 family protein	NA	NA	NA	NA
WP_012413323.1\|209488_210244_+	hypothetical protein	NA	NA	NA	NA
WP_012413324.1\|210240_211440_+	hypothetical protein	NA	NA	NA	NA
WP_012413325.1\|211441_213181_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_012413326.1\|213221_213713_+	hypothetical protein	NA	NA	NA	NA
WP_012413327.1\|213840_214248_+	four helix bundle protein	NA	NA	NA	NA
WP_012413328.1\|214357_218467_+	DUF3854 domain-containing protein	NA	NA	NA	NA
WP_012413329.1\|218489_219272_+	hypothetical protein	NA	NA	NA	NA
WP_041566694.1\|219268_219511_-	hypothetical protein	NA	NA	NA	NA
WP_012413331.1\|219494_220259_-	sensor histidine kinase	A0A2K9L0Z8	Tupanvirus	2.9e-10	31.9
WP_012413332.1\|220516_221170_+	response regulator transcription factor	NA	NA	NA	NA
WP_012413333.1\|221259_221868_-	hypothetical protein	NA	NA	NA	NA
221180:221215	attR	NA	NA	NA	NA
WP_148220504.1\|222054_222741_-	hypothetical protein	NA	NA	NA	NA
WP_012413336.1\|223976_224303_-	hypothetical protein	NA	NA	NA	NA
WP_012406904.1\|224931_225825_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_012413337.1\|225979_227602_-	ATP-binding protein	U5XJW0	Phormidium_phage	1.9e-35	28.6
WP_012413338.1\|227709_229416_-	plasmid recombination protein	M1NXP9	Cellulophaga_phage	3.1e-15	28.2
WP_012413339.1\|230503_231004_+	hypothetical protein	NA	NA	NA	NA
WP_052304751.1\|231006_232236_+	ParM/StbA family protein	NA	NA	NA	NA
WP_083782459.1\|232287_233568_-\|transposase	ISNCY family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage