CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011025	Mycoplasma arthritidis 158L3-1, complete sequence	2 crisprs	cas2,csn2,cas9,DEDDh	7	45	2	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011025_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011025_1

539513-541733

TypeII

Consensus_repeat	Method
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	PILER-CR
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	CRISPRCasFinder
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	CRT

33 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NC_011025_1

>merge|NC_011025|1|539513-541733|PILER-CR,CRISPRCasFinder,CRT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTATTTAATAGAACAATTAAACCTGATTATATACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTAAATTTGTTATCTAATAATTCAGCGATATTACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTTAACATAATCTTCAATGGGGACAAACTCCACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTATGCCATGATGATGTAACCTGTTGGTCTTAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTATTGGGAACAGCAAGAACCATAAAAATGCACACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTAAATATCTACACGCTCTAAGTACTGCTTTAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTATTTTCAGTTCAAATTTGCTTAATACCTTACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTTAGCGAACTTGGTAGTAAGACTAATAGACTACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTAATTCAAAGATGATAACCGTAAAAAATGAGACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTATTAACTTTTGTTATGCTGTGAAAACCGTAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTCTTAACCTTTCAGTTAATTCTGCAATTTTAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTATTTATAATAATTTTCATGCGTAAATTCCTACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTGATAGTATTGTGACATCAATCATGTAATCACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTCATTTTGATTATATACTTGCTTCGGCATAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTAATGATAATAACGATTATGATCTAGTTGTACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTCAGCCAGAATTGTTTTTTAGTCAATCAGTACTTTTGGACTGTATAATTTTTATATAGAGTAAAGTCCAGCCAGCATTACTTTTTAGTCAATCAGTACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTCAGCCAGAATTGTTTTTTAGTCAATCAGTACTTTTGGACTGTATAATTTTTATATAGAGTAAAGTCCAGCCAGCATTACTTTTTAGTCAATCAGTACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTGATAAAACCAGTGCAAAATTGATTGGATAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTCGAAGTTTTCAAAATAAATCGCTCTGCCAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTGGTCACTATAAATAACTTCAATAAAATTTTACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTACGAAGCTTTTAAAGAATTGAAATTGATAAAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTCTTTTTCTCTTTTAGCATCGGAAAAAATAAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTATAACTGTCTAAGTGGTGTTCATTAATATGACTTTTGGACTGTACAATTTTTATATAGAGTAAAGTTTTCACACTTCTTGTATTGCAGGTGATTTAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGCAAAACCAGGCCACTATATTTTTATAAAAATACTTTTGGACTGTACAATTTTTATATAGAGTAAAGCCCAAAGGATTTACAACGGTTTTATATCCTAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGCTCTTAATTCTTTTAAACTGTCTGCTTTGTTGAACTTTTGGACTGTACAATTTTTATATAGAGTAAAGCAATATATAACCTGGATCATTAACAGGTGAGACTTTTGGACTGTACAATTTTTATATAGAGTAAAGCTTTTGCCACAAAACTACAGGAGCTTTTGTTACTTTTGGACTGTACAATTTTTATATAGAGTAAAGCTTTTTCATTGCTACTCTAATTGGGTTTGCCACTTTTGGACTGTACAATTTTTATATAGAGTAAAGCATTTAGGATTGTATTTTTGAACTGTCCCTAAACTTTTGGACTGTACAATTTTTATATAGAGTAAGGC

>NC_011025|1|1|539513-541665|PILER-CR
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TATTTAATAGAACAATTAAACCTGATTATAT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TAAATTTGTTATCTAATAATTCAGCGATATT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTTAACATAATCTTCAATGGGGACAAACTCC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TATGCCATGATGATGTAACCTGTTGGTCTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TATTGGGAACAGCAAGAACCATAAAAATGCAC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TAAATATCTACACGCTCTAAGTACTGCTTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTATTTTCAGTTCAAATTTGCTTAATACCTT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTTAGCGAACTTGGTAGTAAGACTAATAGACT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TAATTCAAAGATGATAACCGTAAAAAATGAG
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TATTAACTTTTGTTATGCTGTGAAAACCGTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTCTTAACCTTTCAGTTAATTCTGCAATTTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TATTTATAATAATTTTCATGCGTAAATTCCT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTGATAGTATTGTGACATCAATCATGTAATC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTCATTTTGATTATATACTTGCTTCGGCATA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTAATGATAATAACGATTATGATCTAGTTGT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTCAGCCAGAATTGTTTTTTAGTCAATCAGT
ACTTTTGGACTGTATAATTTTTATATAGAGTAAAG	TCCAGCCAGCATTACTTTTTAGTCAATCAGT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTCAGCCAGAATTGTTTTTTAGTCAATCAGT
ACTTTTGGACTGTATAATTTTTATATAGAGTAAAG	TCCAGCCAGCATTACTTTTTAGTCAATCAGT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTGATAAAACCAGTGCAAAATTGATTGGATA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTCGAAGTTTTCAAAATAAATCGCTCTGCCA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TGGTCACTATAAATAACTTCAATAAAATTTT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TACGAAGCTTTTAAAGAATTGAAATTGATAAA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TCTTTTTCTCTTTTAGCATCGGAAAAAATAA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TATAACTGTCTAAGTGGTGTTCATTAATATG
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	TTTTCACACTTCTTGTATTGCAGGTGATTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	CAAAACCAGGCCACTATATTTTTATAAAAAT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	CCCAAAGGATTTACAACGGTTTTATATCCTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	CTCTTAATTCTTTTAAACTGTCTGCTTTGTTGA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	CAATATATAACCTGGATCATTAACAGGTGAG
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	CTTTTGCCACAAAACTACAGGAGCTTTTGTT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG	CTTTTTCATTGCTACTCTAATTGGGTTTGCC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAG

>NC_011025|1|1|539513-541733|CRISPRCasFinder
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATTTAATAGAACAATTAAACCTGATTATAT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	AAATTTGTTATCTAATAATTCAGCGATATT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TTAACATAATCTTCAATGGGGACAAACTCC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATGCCATGATGATGTAACCTGTTGGTCTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATTGGGAACAGCAAGAACCATAAAAATGCAC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	AAATATCTACACGCTCTAAGTACTGCTTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TATTTTCAGTTCAAATTTGCTTAATACCTT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TTAGCGAACTTGGTAGTAAGACTAATAGACT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	AATTCAAAGATGATAACCGTAAAAAATGAG
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATTAACTTTTGTTATGCTGTGAAAACCGTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TCTTAACCTTTCAGTTAATTCTGCAATTTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATTTATAATAATTTTCATGCGTAAATTCCT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TGATAGTATTGTGACATCAATCATGTAATC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TCATTTTGATTATATACTTGCTTCGGCATA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TAATGATAATAACGATTATGATCTAGTTGT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TCAGCCAGAATTGTTTTTTAGTCAATCAGT
ACTTTTGGACTGTATAATTTTTATATAGAGTAAAGT	CCAGCCAGCATTACTTTTTAGTCAATCAGT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TCAGCCAGAATTGTTTTTTAGTCAATCAGT
ACTTTTGGACTGTATAATTTTTATATAGAGTAAAGT	CCAGCCAGCATTACTTTTTAGTCAATCAGT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TGATAAAACCAGTGCAAAATTGATTGGATA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TCGAAGTTTTCAAAATAAATCGCTCTGCCA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	GGTCACTATAAATAACTTCAATAAAATTTT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ACGAAGCTTTTAAAGAATTGAAATTGATAAA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	CTTTTTCTCTTTTAGCATCGGAAAAAATAA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATAACTGTCTAAGTGGTGTTCATTAATATG
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TTTCACACTTCTTGTATTGCAGGTGATTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	AAAACCAGGCCACTATATTTTTATAAAAAT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	CCAAAGGATTTACAACGGTTTTATATCCTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	TCTTAATTCTTTTAAACTGTCTGCTTTGTTGA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	AATATATAACCTGGATCATTAACAGGTGAG
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	TTTTGCCACAAAACTACAGGAGCTTTTGTT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	TTTTTCATTGCTACTCTAATTGGGTTTGCC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	ATTTAGGATTGTATTTTTGAACTGTCCCTAA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAGGC

>NC_011025|1|1|539513-541733|CRT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATTTAATAGAACAATTAAACCTGATTATAT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	AAATTTGTTATCTAATAATTCAGCGATATT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TTAACATAATCTTCAATGGGGACAAACTCC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATGCCATGATGATGTAACCTGTTGGTCTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATTGGGAACAGCAAGAACCATAAAAATGCAC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	AAATATCTACACGCTCTAAGTACTGCTTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TATTTTCAGTTCAAATTTGCTTAATACCTT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TTAGCGAACTTGGTAGTAAGACTAATAGACT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	AATTCAAAGATGATAACCGTAAAAAATGAG
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATTAACTTTTGTTATGCTGTGAAAACCGTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TCTTAACCTTTCAGTTAATTCTGCAATTTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATTTATAATAATTTTCATGCGTAAATTCCT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TGATAGTATTGTGACATCAATCATGTAATC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TCATTTTGATTATATACTTGCTTCGGCATA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TAATGATAATAACGATTATGATCTAGTTGT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TCAGCCAGAATTGTTTTTTAGTCAATCAGT
ACTTTTGGACTGTATAATTTTTATATAGAGTAAAGT	CCAGCCAGCATTACTTTTTAGTCAATCAGT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TCAGCCAGAATTGTTTTTTAGTCAATCAGT
ACTTTTGGACTGTATAATTTTTATATAGAGTAAAGT	CCAGCCAGCATTACTTTTTAGTCAATCAGT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TGATAAAACCAGTGCAAAATTGATTGGATA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TCGAAGTTTTCAAAATAAATCGCTCTGCCA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	GGTCACTATAAATAACTTCAATAAAATTTT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ACGAAGCTTTTAAAGAATTGAAATTGATAAA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	CTTTTTCTCTTTTAGCATCGGAAAAAATAA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	ATAACTGTCTAAGTGGTGTTCATTAATATG
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGT	TTTCACACTTCTTGTATTGCAGGTGATTTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	AAAACCAGGCCACTATATTTTTATAAAAAT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	CCAAAGGATTTACAACGGTTTTATATCCTA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	TCTTAATTCTTTTAAACTGTCTGCTTTGTTGA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	AATATATAACCTGGATCATTAACAGGTGAG
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	TTTTGCCACAAAACTACAGGAGCTTTTGTT
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	TTTTTCATTGCTACTCTAATTGGGTTTGCC
ACTTTTGGACTGTACAATTTTTATATAGAGTAAAGC	ATTTAGGATTGTATTTTTGAACTGTCCCTAA
ACTTTTGGACTGTACAATTTTTATATAGAGTAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011025.1\|WP_012498355.1\|548678_550514_+\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071
NC_011025.1\|WP_012498353.1\|547506_547965_-\|MscL-family-protein	unknown	unknown	gnl\|CDD\|376605
NC_011025.1\|WP_012498358.1\|554740_555622_+\|DnaD-domain-protein	unknown	unknown	gnl\|CDD\|226138
NC_011025.1\|WP_012498348.1\|537523_538417_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_011025.1\|WP_041914106.1\|545620_546802_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NC_011025.1\|WP_012498341.1\|527767_530437_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NC_011025.1\|WP_012498354.1\|548158_548674_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NC_011025.1\|WP_012498342.1\|530770_531151_+\|hypothetical-protein	unknown	unknown	unknown
NC_011025.1\|WP_012498359.1\|555648_556560_+\|hypothetical-protein	unknown	unknown	unknown
NC_011025.1\|WP_041914103.1\|533972_535574_-\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NC_011025.1\|WP_012498356.1\|550601_553601_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235944
NC_011025.1\|WP_129648914.1\|532856_533165_+\|hypothetical-protein	unknown	unknown	unknown
NC_011025.1\|WP_012498352.1\|541842_542097_+\|TraM-recognition-domain-containing-protein	unknown	unknown	gnl\|CDD\|226036
NC_011025.1\|WP_012498350.1\|538729_539506_+\|hypothetical-protein	csn2	cls000024_csn2_CAS-II-A	unknown
NC_011025.1\|WP_012498357.1\|553590_554472_+\|5'-3'-exonuclease	unknown	unknown	gnl\|CDD\|235591
NC_011025.1\|WP_049752931.1\|538397_538730_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_011025.1\|WP_041914105.1\|542882_545600_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NC_011025.1\|WP_012498343.1\|531129_532116_+\|hypothetical-protein	unknown	unknown	unknown
NC_011025.1\|WP_012498345.1\|533172_533862_+\|hypothetical-protein	unknown	unknown	unknown
NC_011025.1\|WP_012498347.1\|535817_537326_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463

Protein	Function_ID	Function_description	E-value
NC_011025.1\|WP_012498355.1\|548678_550514_+\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0
NC_011025.1\|WP_049752931.1\|538397_538730_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.92606e-17
NC_011025.1\|WP_012498348.1\|537523_538417_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.91083e-132
NC_011025.1\|WP_012498356.1\|550601_553601_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235944	PRK07135, dnaE, DNA polymerase III DnaE; Validated.	0
NC_011025.1\|WP_012498341.1\|527767_530437_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NC_011025.1\|WP_012498354.1\|548158_548674_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	1.26813e-75
NC_011025.1\|WP_012498358.1\|554740_555622_+\|DnaD-domain-protein	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	2.27173e-11
NC_011025.1\|WP_041914103.1\|533972_535574_-\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_011025.1\|WP_012498352.1\|541842_542097_+\|TraM-recognition-domain-containing-protein	gnl\|CDD\|226036	COG3505, VirD4, Type IV secretory pathway, VirD4 components [Intracellular trafficking and secretion].	1.00439e-05
NC_011025.1\|WP_012498357.1\|553590_554472_+\|5'-3'-exonuclease	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	5.45922e-96
NC_011025.1\|WP_012498353.1\|547506_547965_-\|MscL-family-protein	gnl\|CDD\|376605	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL.	1.44279e-24
NC_011025.1\|WP_041914105.1\|542882_545600_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	8.35122e-41
NC_011025.1\|WP_041914106.1\|545620_546802_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	3.77773e-32
NC_011025.1\|WP_012498347.1\|535817_537326_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0

>NC_011025.1|WP_012498350.1|538729_539506_+|hypothetical-protein
MMIIRTNPECENPNFKGIVTIATSDSDAFLRELYLWEINNNDNAAFSIEHKDIYLKDCFIFSQLTKSYELFNLSAKNFLTKRIYDDELWDDSKVINFSVLEKICENINENIEEDFLRIESDFNKMLKTFFKVNETSLLTRDLFFKWLENYDEVGQKVVILKNLPWVKIEDLVQYLDKFVFIILTDNFFDNCIRFEALETCAFWEKGRLVLVHSLNVIINWIEKKINKNIDLQEEIKNIFNSTFDGEKLFFNLKSEVFS
>NC_011025.1|WP_049752931.1|538397_538730_+|CRISPR-associated-endonuclease-Cas2
MIEVQNRFMRIIVMYDVSFKDENDTKEYTKFYTSLQKLGYYRMQYSIYAKTISTHTKYPYEKAKLISILPKNANVRILCISEQQYQGIEILRGSKSLNEKYNDNERYIKL
>NC_011025.1|WP_012498348.1|537523_538417_+|type-II-CRISPR-associated-endonuclease-Cas1
MEKRVIEISESNYTYLFLNNLVVNKDGTKITIPTSQIDTVLFENDKLTITLPLINDLVDHGINIIVCGRNHMPKAQIIPFQGYYNAKILQKQIKWDNDFKERVWRRIIKLKIRQTMVMLEHLAILRDDDKVKLEDYANSVKAFDITNCEGHCAKLNFKILFGEKFVRKTNTMEDTYNAYLNYGYSVLLSYVARAICSKGYDNRLGIFHRSYSNFYPLACDLMEPFRCIVESLVYKHVRISRGEPNFQEFKEELFTIFYKHFNCQGENLMLIDCIDKLVVLVLSDHDIKGPYFNWSAE
>NC_011025.1|WP_012498347.1|535817_537326_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MNKKVILTVIDGLGLRDEVQGNAYLQASHPTFDLLFSSCPNSVLEASGEFVGLPKGQIGNSEVGHLNIGAGRIVYTGLSLINNAIDTKTSKDNEVLLKAIKDTKEKNKTLHLMGLLSPGGVHSLDRHLFEILDMAYENGLKKVSVHIFGDGRDVKPQSIYDSLETLKQKTKTYGYKISSIAGRFYAMDRDKMFERNQKSYDAIIGKSSNVIESLDKYIEEQYQNKIYDEFFVPAQLKDGLFVKENDSIIFFNFRPDRARQLSHMFIGSSLYDYQVESKVKIDHFVSLMKYEGINSEVAFEEMKVNMPLGEVISKNNLRQIRIAETQKYAHVTFFMDGGIDILYPLEERVLVDSLKVDSFAKHPQMSAKEITDALLEKIDDVDFVIMNYANPDMVGHTGDLKATIKAIEILDEQFKRIQKYVSENEKNVTWFITADHGNAEITEDENGNPATKHTTSPVMFICSDKTIKLTNGKLADVAPTILDYLGIVAPKEMTGKSLLSES
>NC_011025.1|WP_041914103.1|533972_535574_-|CTP-synthase
MNTKYIFVTGGVVSGLGKGVLAASVGYLLKERGFKVFSMKLDPYLNANPGILSPIEHGECFVTDDGTETDLDLGYYERFMDTNLTCDSSFTSGKLFRKLLEKENNGDFKGQTIQMVPHFTNEIQDVILNIEKKYQADIAIIEIGGTVGDLESNPYFYGIAQLKYLYPQNVFFIHTGFVPYLESSQEFKSKPTQHSIATLRSLGISPNIVFLRSHMPISEDISAKIAKFSFLDKSNIINVPDFDVIYEIPLYLDTKNVADIICRHLNIKARSKVNLAKWKEFVNSLKNKNKKEITIAMCGKYVSFLDSYKSIIQSIIFASVAKNVNVDFKWIDTTKINEDELKNILLNVHGLVLLPGSGLEGWENEILAAKIARDSNLPTLGICLGFSAMAVEQARRIKPNANSIEFRDLDEDAFFVTTKIFGFDENKYHVRIGSRKINILPNTKAKKIYNKEQIEERHKHRYFVSYDIALAISDENAHFSSFNESKEIAETFELKNHPFYFGVQYHPEYKTRPLNVGKLFPTFLEAALQNKKR
>NC_011025.1|WP_012498345.1|533172_533862_+|hypothetical-protein
MNYFVIISMPFWVFASVELAIYLIFYLFIVYGFSKNYFKIRIRHDKKFLNVGLNLTILFLIATNVFFIFLFVFLIYQIIYKNELYIFVYLALDVVIETLINIILISGIYIIKKYKKDRFYYPRGGAFGSILIFLLSWRLFIWHKMTDHEEKIIRDQLKDKIEDIKTLDDLIGLLSIIEEREKKWDLKINRFWYDKVIYNVYGEKFEWTTIDNVFAALSKHQVDKNAKEN
>NC_011025.1|WP_129648914.1|532856_533165_+|hypothetical-protein
MFGLWLNGLLFSKVTWWSKMSDFDEKIIRGRLKDEIENIKTLDDLIGLLSIIEESEKKWKSKFNKFWYDKMLFHIYEEKFDKITIESFFDLIKELDRKTNGV
>NC_011025.1|WP_012498343.1|531129_532116_+|hypothetical-protein
MNDPEFVKNNMKEFLDKTVENIINQKRETNFWTKNFNLEAKKQIEILKSKNYYINDDKSNTSKLIYAEILQIQEMLGEYHEKIKPLFDEIGQLTKVLKGFNIAQITIGVLIAGLAISNFFLAGTLTPLIAALGALSTILGTIQVWLATTRDYLLETKEKVKIVMKGLKTFAKDRAIEAALKKLTDILMRKMAATGVKNVSSSISNLIGAGIIIGVNTKELLDKQIKNVEMKVFEKTKYLNKRVELLRKNSKFVVVSETPQYGDYNEGGYGGKNLIFRNLTEEKDYTLEDLLAMDEKYLWMFNLIKVYDKNKGWYVKTRPNKMIEDNLG
>NC_011025.1|WP_012498342.1|530770_531151_+|hypothetical-protein
MKLKALTRIADTFYAPNALVGNINPQMVQRVYTQDIKWEDGIVPRIKPKNINRSEIEKTAKILKNTLEKNKNVIEKIAGSSGLYQKRFEELTDNEKISLFKNSIDSLPLSPEQKVEMDKKWMILNL
>NC_011025.1|WP_012498341.1|527767_530437_-|isoleucine--tRNA-ligase
METKKDYKDTLLMPQTDFSMKANLAEKEKQFIKNWEESKLYQRLLKKNKSNKPFILHDGPPYANGNIHLGHALNKIIKDIIVRFRTMQGFFSPYVAGWDTHGLPIEHKMLSEAKKAAKDYSIVELRKAAHQYALSQIELQKEQFKKLAVLTDFQDIYVTLDKELEAKQLELFKKEILSGLIYKDLKPVYWSPSSQSALAEAEVEYSDHVSPSIYVAFELQNNKIFPKNTSLLIWTTTPWTLLANAAVAINEKFNYSLIEVKNRNFIIASELVETVASEGKWENWKILKTFKGKELLSLNYLSPLNKNICPVVLGHHVTLESGTGLVHIAPLFGEDDFIIGQKNALNSIMHVEDDGTLNKHGLQWAGIFYDDANPKIGQYLEANGNLIIFKKIKHQYPHDWRTHKPIIYRATPQWFVSLKSIKSNLTDALKEVKTYNEWSKKRLLNMLENRESWCISRQRSWGVPIIVFYDKNKQPVLEEEIFDHVIDLVRKYGSDIWYEKSADELLPKKYQGKGFVKEQDIMDVWFDSGSTSISVKPGNVEAPFDLYFEGSDQYRGWFNSSLINSVIWRNKAPFKALLSHGFLLDGKGNKMSKSKGNVIDPLDITNKYGADILRLWVANSEYTNDISIDDKILQQNIEIYRKFRNTMKFILGSISDYDWSEVKLSSIHELMFNRLQNLTNKIIEAYEDYRFVAVIKLINNFVINLSSYYLSIVKDILYLNKQNDSERRQVQFVLASIAKVLTIAFAPIMPSTCEEIYSYLNIPNKLSSIHEEEFPKLSTPNEKLEEKWEEFFLLKDEVYKAIEEKIQLQLMKRQNEAHVTLKTPSDFIKSLDLTKLLMVAKVTFGSEFKVEKLVSYKCLRCWNHFERANFDFDLELCQRCKEVVNEQTN
>NC_011025.1|WP_012498352.1|541842_542097_+|TraM-recognition-domain-containing-protein
MLLVIQSFEQLQKYAKKGRNSKARLNCLLETNYLETSKSFSSILGQKLIEHKTISSTNKNETISISEQKEDLMSLSDLKYKTLI
>NC_011025.1|WP_041914105.1|542882_545600_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MAFYQSGIKDLSFLTLDLAIEGIEKNSPSWLNVYDNIAQILSKSIDVDTRASELKEYFKKTEASEFLNSIKDDEFEFEKLAEILSLNLAKINNSYSLTSSLSFKALRLFIPKLAKTTSNEEELKFKDPDIKSQIAAKNQEPKKTKYIDAKQFDDAVLPPSVKRTIKEAIGVLNQIIKLYSNNYEIAEIVVEMARDKNSKEETNRINKENKSNKKSNQEIIKEIKKHVSEDKYNSLPISTKEKIKLLLQQKCKDVYDCQTITIEDVIRKPHLYEIDHIIPITVLPDNSFANKVITKQKNNQAKSNRTPYEWLGSDAEKWSELESYWSCTTSGKIKENWNINYFPNKESLAKKIKYLSLNNKYELDDFLNRSLNDTRHSTKLFVDVLKAFFNNSSSYKEDAVDNVNSKNKKVKISTTKGALTSLFRKCITNKLLKNYNLPIENCWFKKDRDKFFHHAIDASLIVFINKYYLSQVYGINVFYKDKRTGLILENAPINGKEHYEKFLFSNGFKKTNDDWARMKFDETMNKIIEKITENVVEKVKYSRKILAKRTNGELFNKLRYGYTEISSDKKAAMKDHDSINKISKLSLLSQDESDLKKLETFFSDNANENDKSKLLIYKSKVGYSQYKLLKEIYNKAEFKQNELDGSKKNINPFENYMKFLATKIDEIPEFQKIIPKERFEALSRQKKFILMNSKFTKVIAIIQNLKYEFKTKTLDDVIFSKTILKKDGNGWKEAYFQESLTSFGCLVYKHKQKPKELKAVAINAKNLKIVNNHFKTSLFEGLANNADTPDKQNEVLNKIKSDAGIGDEYEFYTALFKSQIFERIKTNESKDESVKNNYDNLAYIVGISIVKRSTEITLYHLKENKFKKIGLQKRKRDSIRHNVNEFFKKFRKVDIDILGNIKRSK
>NC_011025.1|WP_041914106.1|545620_546802_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MEKKTKVILGFDLGIGSVGWSIVNKETDDIIDLGSRLFPEPELAVKRREARSSRRINRRKKYRNLHFYREVVKHKNIFGFSSKDEITSYFLEANKKWNNILELKCLALKEKVSPQELVYILHDYLKNRGFFYNLISEEQVEETLDEVNDPKKTKSKKSNKKSSLKAKGDNKEKFEPILDSVDKRLRPSEKLFEAFKLYGFSKELSSINNDKYKFHNNEWVKEIEDLFATQGFTDSEFAKHYLSRFKYVRSFAEGPGSEHSPSKYGIYEKNEYGEVVKKYNSIWEKTIGKCSVFEDEYRAPKQSPSAALYNLLVDLANGWLDTFSVHNNVIIERTKIPSELKFKIINGILESIKKDPNKKSPEVDRIFKKIATKELKIKSPKFDYESEKIRLVI
>NC_011025.1|WP_012498353.1|547506_547965_-|MscL-family-protein
MTQKELNDKKKVFKNAYKDAKKSITKGNMFMLAIAVLIGAAFGAVVSSLANDVIMAAIAKIWNASSVEDLKVAGTIKIGKFLAALIQFVIVATVVFFTLLIVFSIKNAIEYAKAKKMPIEPEAEPTPTNEELILAELKKLNSQIENLNRNQN
>NC_011025.1|WP_012498354.1|548158_548674_+|adenine-phosphoribosyltransferase
MELKEYIRTIDNFPKKGIKFKDISLLLANGEALHYTIEEMAKLAKDADIIVGPDARGFLFGTPVAAKLKKPFIMVRKKGKLPGEVIGYEYALEYGTNVLEIQKGITKAGQKAVIIDDVLATGGTLEAITKILNSLGVEVLRIIVLMELDGFDARKKLNCDIRNLIFIKEDE
>NC_011025.1|WP_012498355.1|548678_550514_+|oligoendopeptidase-F
MKLKNYHSYHEVEDQYKWDLEDILGQKTYQEIEDEYFNLFEEAIKTKDSKYESIDAFIDSIKLSEKIALLGNKIENYIHNKLATNLVDFELNTLSTNFTIKNASYAKRLGSELNRVFTNQEKIQMWLDDDRLKDVKKDLQELLKDLKYKLNDNVESYLNDTAKGAPALDEIFSILTDSETQYGYATSKKGKKYLITEASRQALLKNTDEKVRKETYSNYLKAFLAKKQTLAKLLYQSLKELSVNSLYRSYPSTIDALISGDHITKDFLITLYDSVSKNSSLIRKFATAKAKFFKKKFNKKQQIWDTSVDLVKVKSTYSVEEAKQILLDITSVMPFEYPQIVKEALETKWVDYMNVPNKRSGAYSIGSSYGISKKYILMNFNGTIDSVNTLCHEMGHSLHSYYSDKTQPFARSQYPIFLAEIASIFNELLLNDYLITKTNNKKEKFMLLENSISDFLGTVVRQTQWSNYEYELYEALDKDEPVDSYEALEELYVKVAKQYAAFPKRIKKGLPANVYSVMVPHFYYNFYVYKYAIGYIVANVFFQKYKQEGKIALENYVTNFLSAGDSDWPAEILKKAGVDIYSKQIYDEAFALLESKINEYIALGNEIFKTK
>NC_011025.1|WP_012498356.1|550601_553601_+|DNA-polymerase-III-subunit-alpha
MKLINIHLNSIYSFLQSTIQLDNLIENALKNNVEYLAITERGNFFSFAPFYEKCQAHKLKSIFGLDVDIEIQGKPYRFILHAKNNTGLFELFNLSYDILSNKKLYLDDVANNKNIIFIEHVLDGYYKKTKQVLDYDNHYISLGLHEVSENAVFINENLHKILISHHNAIMDFDDNSLIKILALMNEDAINSNATFDILEFGFAVATDLEKKLITKTNELMQGCYFELPKNDYILPKFQNELNLDSTKYLQTLIKNNIVKRFEKSAWNDEYKLRLLHEMSIIEKLKFEDYFLIIQDWVNWAKKNKIAIGPGRGSAAGSLVSYILGITNVDPLKYGLIFERFLNPERVSMPDIDIDVQDNRRQEVIEYLNKKYGSSQVANIVTFASLGKKSAIRDVMRTYDVSPAMINEVSKLIGLKEGSLLEEYQSNKKFALALNSLNKEDANFSTKILNYASQLEGFYRQTGTHAAGVIIAPKPINQIIPTYKIEDGIQQTQVSMEYLEHFGLLKMDILGLKTLTTIQEVLLQIKKTKNLDLDLAKIKYEDQLTFDLLNTGSTVGIFQLESFGMTKALKQIHVDSFNDIVATISLYRPGPMDNLKVYAKRKNAHEPIPSISKAYDEIVKGTYGIIIYQEQIMQIVQAVANLSFSQADNIRRIISKKKVDEMHAVKTNFVNSAIKNGYSEKDALNIFELISKFADYGFNKSHAVSYAMISYQMAYLKAHYPLEFYSAIISSAHGAHETIARFSAEAKSLGIEIISPDINLSNQNATILNKAIVLPLNMIKGIGPETVRLILEDRKINGPYRNFLHLFVCLMHIKNFGLANLEILIKANALRTFNINQATMLNEIAKENSDIRLLFKIKKTDNSSPKDFLEEINNYSPSEHFKVNPKEEAQNEAYYLGQVYNFNLVKKYELEGNRLANIHLGTEHIIYVYCSDVKRKISTNDKEYYVVVLEDSSMQLILRIFRGNDSYLEMKNHILKVKIIRQANGNFILRNWSIINDHEE
>NC_011025.1|WP_012498357.1|553590_554472_+|5'-3'-exonuclease
MKNKILVIDGTYLAYRSYFATTYKGVVMANQEGTLTNAVFGFFNTLLTLIKMQKVTHVFVAFDSKIKTFRHELFSGYKATRQKAPSDFYVQLNFIQQLLDALNITNFYKDGFEADDIIAKVVSIFSEDEILIHSADQDLNQLINPNVAIIKKNNKGVYFELNANNFGEYYDFLPSQVIDYKALVGDSSDNFKGVPGIGPKSAAGLLHEYGTLENIFANIESIKPALKAKIEANKEEALRDKYLATLRTDFEIPPISHEELLISAITLSPDASYIIRRLELNSLKNRLLELLAN
>NC_011025.1|WP_012498358.1|554740_555622_+|DnaD-domain-protein
MSEIFYIENPENVNKCDLENLRLFYLPVIGTTATCLYQYLLDLYDLLVDKTKKLNLNETLQFLGLNFELFKEAKEKLEALGLIKTYLSPNYETLYSLKTPLCANGIAQNSLLSNLIIKKIGIDQYTEIIKAKAKMSFNKNEFYEVSKKYFEVFDVNEINFQKPTFDFEIQDISNAKDHLKSEDFIKYLIKREPSPSQLLMLKKLRKMAFSDKSINLFINFSFNVNNLIVVNYIEKIAKDYARRNIFEADAVDSELGYALCSKTREFSVSELSQQTLDMQGKLLELSGENNWDN
>NC_011025.1|WP_012498359.1|555648_556560_+|hypothetical-protein
MQKEILDRALANVTAEEFDQNAEKSAILCHPKIAELIITLKLNQKQIDNGMNYLQKYYNFLTKNSKEPDWKIYVNLDGQLDIDFSNEISFRKQNMYNNFWLTQITPLDNDLETYFAIPSKQKPRKILTEAEQKMQLFSPALKNTIQLITAKESKGLFLVDDSFAASRAIFKYLATLFATNKNKTVAYIDANSLYKFLSNNYYKKPSQSESLIEKYLLEVDYLFIERLGVGLKPEWFITFLISIFSEREINHKINFVSSPIDISGNYPLILNLGQHYNAGAEKVETLFKNILKTSFVKFIAKNK

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Crispr_ID: NC_011025_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011025_2

694639-694737

Orphan

Consensus_repeat	Method
TGAAGGGAATCGGACCCTCGTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011025_2

>merge|NC_011025|2|694639-694737|CRISPRCasFinder
TGAAGGGAATCGGACCCTCGTATTTAGATTGGCAACCTAATGTTCTACCATTGAACTACATCCGCATGGTGCAAGTGAAGGGAATCGGACCCTCGTATT

>NC_011025|2|2|694639-694737|CRISPRCasFinder
TGAAGGGAATCGGACCCTCGTATT	TAGATTGGCAACCTAATGTTCTACCATTGAACTACATCCGCATGGTGCAAG
TGAAGGGAATCGGACCCTCGTATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011025.1\|WP_012498451.1\|688259_689900_-\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|274671
NC_011025.1\|WP_012498462.1\|706095_706491_+\|hypothetical-protein	unknown	unknown	unknown
NC_011025.1\|WP_012498460.1\|701484_702813_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NC_011025.1\|WP_012498458.1\|698064_699750_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|372624
NC_011025.1\|WP_012498452.1\|689902_690196_-\|hypothetical-protein	unknown	unknown	unknown
NC_011025.1\|WP_041914111.1\|692376_694230_-\|hypothetical-protein	unknown	unknown	unknown
NC_011025.1\|WP_012498450.1\|687239_688241_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NC_011025.1\|WP_012498459.1\|700132_701482_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NC_011025.1\|WP_041914192.1\|685417_686461_-\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|176257
NC_011025.1\|WP_012498461.1\|703094_705389_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224183
NC_011025.1\|WP_041914112.1\|694230_694434_-\|hypothetical-protein	unknown	unknown	unknown
NC_011025.1\|WP_012498463.1\|706928_707759_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|238484
NC_011025.1\|WP_083756737.1\|692193_692361_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367869
NC_011025.1\|WP_041914114.1\|705544_705922_+\|hypothetical-protein	unknown	unknown	unknown
NC_011025.1\|WP_012498454.1\|691516_692035_-\|hypothetical-protein	unknown	unknown	unknown
NC_011025.1\|WP_012498456.1\|695914_696919_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NC_011025.1\|WP_012498457.1\|697006_697903_-\|nucleotidyltransferase	unknown	unknown	gnl\|CDD\|184228
NC_011025.1\|WP_012498453.1\|690211_691471_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
NC_011025.1\|WP_012498455.1\|695335_695857_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NC_011025.1\|WP_041914110.1\|686501_687233_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274024

Protein	Function_ID	Function_description	E-value
NC_011025.1\|WP_012498451.1\|688259_689900_-\|DAK2-domain-containing-protein	gnl\|CDD\|274671	TIGR03599, YloV, DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.	0
NC_011025.1\|WP_012498460.1\|701484_702813_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NC_011025.1\|WP_012498458.1\|698064_699750_-\|APC-family-permease	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	2.17582e-26
NC_011025.1\|WP_012498450.1\|687239_688241_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	3.62459e-127
NC_011025.1\|WP_012498459.1\|700132_701482_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	4.49343e-103
NC_011025.1\|WP_041914192.1\|685417_686461_-\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|176257	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	2.92665e-171
NC_011025.1\|WP_012498461.1\|703094_705389_+\|hypothetical-protein	gnl\|CDD\|224183	COG1263, PtsG, Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific [Carbohydrate transport and metabolism].	2.76454e-06
NC_011025.1\|WP_012498463.1\|706928_707759_+\|AAA-family-ATPase	gnl\|CDD\|238484	cd00984, DnaB_C, DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.	4.44281e-54
NC_011025.1\|WP_083756737.1\|692193_692361_-\|hypothetical-protein	gnl\|CDD\|367869	pfam04200, Lipoprotein_17, Lipoprotein associated domain. This presumed domain is about 100 amino acids in length. It is found in lipoprotein of unknown function and is greatly expanded in Mycoplasma pulmonis. The domain is found in up to five copies in some proteins. This family also includes the Mycoplasma arthritidis MAA2 variable surface protein. MAA2 is implicated in in cytoadherence and virulence and has been shown to exhibit both size and phase variability.	0.00207207
NC_011025.1\|WP_012498456.1\|695914_696919_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	3.95765e-164
NC_011025.1\|WP_012498457.1\|697006_697903_-\|nucleotidyltransferase	gnl\|CDD\|184228	PRK13671, PRK13671, nucleotidyltransferase.	3.48085e-169
NC_011025.1\|WP_012498453.1\|690211_691471_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
NC_011025.1\|WP_012498455.1\|695335_695857_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	1.65437e-43
NC_011025.1\|WP_041914110.1\|686501_687233_-\|hypothetical-protein	gnl\|CDD\|274024	TIGR02191, Ribonuclease_3, ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family. [Transcription, RNA processing].	1.1482e-47

>NC_011025.1|WP_041914112.1|694230_694434_-|hypothetical-protein
MKKFKKNLSLLTVSILGTTLFATSVVAAACDDTKKKPEEPKKEDSKQKPDQKQEQGQEITELNNWLK
>NC_011025.1|WP_041914111.1|692376_694230_-|hypothetical-protein
MSLKIVDGKIDAFYKAIEAKKDFYYSYSSKKLIAVEKGKRPNWREENEELLSLEGEFASNKHQIVNDEKPTYTDSKGMVKLSSLIRYEVKDGKIIFYFKGAIHDHKGAHKISTEVHKMEFPRQSLASNFEEYVKNLQFSYPNLEETLLDDVDIDKVHPSEDLKEGYEFAKKTIVKEPETNTLSILYSIRKKDIDYKSKNYVFNLKGWKKSSEMLKKIEEAKNKINEEINKLDIKILNEKAYQNIKETNSHLNFEGKSNFATGSYDVNLFKLEYVSVKFNETSKKIEVDVKLSIILDDSISVSKKLIIEGNYANGNINPHNLTEEDQKKYLSDELEKMTVHPYYSKDKTYIERLNDNELSDRSFWINNKNKSLTYTFGKVEKTLEGKYNVEVTTSFFDWNESPRETKKVLIDLEKLGIDIHNKIREQNNQAPLEDKKAPSGTVEENIDPDLNTEGFKETPSDDHNGGASSIIHLRNFIEDIKKQKLMLWDNEMLTQIKEKKYTLPFAQFFSYDKEKLELKSKVQFFSKSLKMVDGQTAFIISGPKEADGKLTIKLTLMTLQDFKAKNFNSENMISRRVEIDQTTFAKDYITKKFLLERYIRSLRLLFDCVGKEDMKPS
>NC_011025.1|WP_083756737.1|692193_692361_-|hypothetical-protein
MVILESHLPSGIKLIEKSTHDMKDKKGTLTIKCKFSYNGVETGDMFYTIKGFKKQ
>NC_011025.1|WP_012498454.1|691516_692035_-|hypothetical-protein
MANYKKYKNRKINLEKIEQDSVKQKEPLKTSWKIALTSLFLIAIPSFLLFLLLGKDGWIFSQTKSLHRWAVEFPIALAFSIFQIGIVSLLIWKFKVLPVGAFAFLMPLSLAMNSFLVSSGVTNWILRVLPAVGLGFVAIPIIAINKKIRENLSKKKQKIISEEEKQTKSLLD
>NC_011025.1|WP_012498453.1|690211_691471_-|serine-hydroxymethyltransferase
MNKKVTLHDQDIADLINKESHRQEEHIELIASENYVSEDVMKAAGSSLTNKYGEGYPGKRYYGGCEFVDEIEKIAQERACKLFNAKYANVQPYSGSVANAAIYMALLNPGDSVLGLSLDSGGHLTHGYRISFSGIFYKSYTYTVNQDGVLDYDEILKIAQEVKPKMIICGYSAYSQIVDFAKFREIADAVGAYLFADIAHISGLVIANLHPSPMGYADVVATTTHKTLRGTRGAIILTNNEEIAKKIDRAVFPGNQGGPLFHQIAAKAVSFYEALQPEFIEYQRQIILNCKVFCQTFINKGVRVISGMTKNHLFTIDVKTSYNLTGKQAEQILSKMNITVNKNTIPFDTESPMVSSGIRLGVAAMTSRDFKEDEFIILANLIDKALREPNNETLHQVIKKEIAKLSHSFPIKRNYLDKK
>NC_011025.1|WP_012498452.1|689902_690196_-|hypothetical-protein
MDLQNIKKIIISTILTISGIAGFASVDGKNKNLDENNIIIEHSNKSEDIVIVKIGLIILSNINAKNIVDEIYQVIVYNLEKNNLKLETLDITIKGTR
>NC_011025.1|WP_012498451.1|688259_689900_-|DAK2-domain-containing-protein
MNKINGMHWKNALISAANNIKNKKDAINALNVFPVPDGDTGSNMASTIIAARDAILNLNEKNLEAVGKVVSQSMLMNARGNSGVILSQIFKGFANAFKNKTEISVFDMVNAFEEASKAAYRAVLKPVEGTILTVIREIAEGLKETVVVESTFEDIFNLALEYARKSCDNTPNLLAILKEVGVTDSGGEGLYAIIEGMSLFFQNKAVIETKTSSESIGTFISDSEVFNGEFGYCTEFILELKNYRKFDKESLVKRLEKIGNSMVVVQDEEILKVHIHAKKPGDVLNAVNSLGQFLKIKIDNMTVQASSSKEVASKLASPDATTPKKTYSKKCALISCNVGQGIIELVKQNGVSYVIEGGQTNNPSTQDIVKAADAVDSKTVFILTNNSNIILSAQQASTIVTDKKIITIPTKSQAQCLSVAMNFNEDASEEENLETMKEAMKNVKYGEIAPSVKNTKLNGIKIKEGDFMVMANNEITATAKTSMDAAINLLHTLVDEDSQIVTIFYGQDVSESDSKILQNYIEVNFDVEIEIYSGGQSIYPYFIAVE
>NC_011025.1|WP_012498450.1|687239_688241_-|phosphate-acyltransferase-PlsX
MDKKIIFDLLNSDGGETLAILAAKKFAHENPNYKLLLVGNQESINNIFKNNLPENIEIVHSPKLLHKTDNPREILREESSMLSAFNLLKEDKGSAILSSGDSGSFLTLSALKVNRISGVLRPSFMPIMPSTNGGHFLLTDVGANVDVKPEYLVEWAKIAVEYHKLFFKTEGKQKLAILNIGTEDYKGPEVSREANKMLMESKNSFDYIGFIEPRDIIDGKADIVISDGYAGNIFLKTMESSFLAFGKMLKSAIHKNIITKIGGLLLKKPLKAIKNKFDYHTVGGAFIIGPNKVVVKAHGSSDELAFYSALKQIKRALDENIIEKVERAIKGDE
>NC_011025.1|WP_041914110.1|686501_687233_-|hypothetical-protein
MTAKKIVRLPIDSEFYNKVVAMLERNGLDIKKIRRPEFVFKSLTHKSFDQSDHFKFNYEYLEFLGDAVLEFYTSDRIFQNFPKYTEGEATRHRQMIVSNENLAKIAHKIGLVEIARFGKKVFEEIKNIPNSKVFSDMFESFIGALYFGLGIGPTFQYLDSVLLDSVLNVIDSKDPKSYFQEIIQANGNLSRLRYVTVAQNNGEFKSELLVDQKVFGVGYGHSKKQAEKAAAISALKKMETSNF
>NC_011025.1|WP_041914192.1|685417_686461_-|alcohol-dehydrogenase-AdhP
MKAFVVESPKNWQIKEVNIPSPKYKEVLIKMETSGICHTDLHVANDDWLLKAKFPIIPGHEGIGIIVELGEGCNRFKVGDRVALAWLHDSCGHCEFCLQGKETLCPNQNMSAYTKDGSFAEYAIGHEDYIAAIPNNFDIVQGAPIVCAGVTTYKAVKKANQKAGNWITVIGVGGLGHLAIQYAKAMGYRVIGIDINDEKCDLAIKSGAEAAFNSLKSNVIDEVIKLTNGGSHAVINTSVATKAAELGLSILRRGGRQVLVGLPSKNASGKDNFEVSIFWSVLYEKEIVGSIVGTRLDLQEAIEFASLGKVKTEITRVVKLEDVPEIFKKLESGDFIGRAVIDFRTKK
>NC_011025.1|WP_012498455.1|695335_695857_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MFKSLYNSPLGILTLISDGEYLIEVNYENSDNKIFKENKLQIKDDLEIFLQTKKWLDIYFSGGNPSEMPQIKLIGSDFQKEVWEQLLQIPYGYVTTYKEIANEIANKRKIKKMSAQAVGTAVGKNPLSIIVPCHRVVNVDFKVGNYTGGVDKKYYLLEKVEKFCIKNNCLKIK
>NC_011025.1|WP_012498456.1|695914_696919_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAKAKIAINGFGRIGRLVFRGIYNDKELQVVAINDLTDAKTLAHLLKYDTAHGKMNAEISHTENSIIVDGVEYPVYAEKDPAMLPWKKLGVDIVVEGTGRFVTVEGSQKHIEAGAKKVLITAPSKTDSVKTIVYSVNENTLNKDDVIVSAASCTTNSLAPVMNVLENEFGVVKGYMTTVHSYTADQRLQDAPHADLRRARAAASNIIPTSTGAAKSIGKVIPNLKGKMNGIALRVPTITGSLVDLTVELKKDTSVEEINQAMKKAASESFIYSDEPLVSSDVIASTAGSIFDSQLTAALEVDGKKLYKIYSWYDNESSFVHQYIRTLKHLAKLL
>NC_011025.1|WP_012498457.1|697006_697903_-|nucleotidyltransferase
MKIGLIAEFNPFHNGHKYLIDAIKSKYPNSYLIVALSSDYVQRGELAVASFEDRKKIALENGVDEVIELDFLTSTQAAHIFAKGSIDLLLKNGIQKLAFGVSDTDDINFYLHCAKKIKENLVQYNTELKSFLKKGYSFVFSSFEALKIILASEVVPADILGFEYVKYIVDNNLDLEPICIKRTVSHGSLTLSKQYASATYLRELLREGKDISQYSPMKVSFPIMKIEDRYSEFQEIVKNNDENWLKNIVLMSEGMENLFKKNIDASNYDEFVDRCTSRRYTKSRIKRVILYVLLKIQK
>NC_011025.1|WP_012498458.1|698064_699750_-|APC-family-permease
MNDEQMVVTSDNKKKISFFSAILIVIGGSIGAGIFLRSKSVLSNSAGNIVWAIAVWLIAGFAIIAMALALVEVASGRNNNLGMIGWAKAFNKLFIYKGVKFFMTYLYLPFTYFFMPYYVIIQFQDGLSGLGVDSKIWQFGNTSATPWIFFAIGLAITVWMMFTAGISSRAGNIQNWVVTAVKFIPLVAIVIIGFAFAAKNGVTYKAVTKADLFSKDATTLFGLSPFFAVFGSLGGIFFAFDGFYVTAGVQSEMEKPEKTPAALTIGLSSITLIYIIIALAMTLGAKKGDFYDYGSLLKTAGHSWAFGVVNICIAIGIIGILNGFTMWATRFVEDLIKEGEISVPVSAYKYMLNAKRPWVGMIFCLVLSVPYMIILTAIGTYAYIGGGYYDDGEIYGKGTDKLLTFADLMADWMAVFAFAFIALAIVGAIQNRKKNFIAVTKNKHTIWAGYTSVIIVLITLTFMILDKFVGMGLSINQYLANTDASKTEGLKSSVIGNTTASVLFLLYIAVSFAFIPLERKMAERKEIKLNETIASGQGDMEKLRLAKEMNDAILRTYREAR
>NC_011025.1|WP_012498459.1|700132_701482_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MEQYKINQILKAQKATEFSYEGYGVIRENGYPIFVKNLLIGEVADIQIIKVTAKFAIAEIFNLIETSPKRIPIKNYELFRSCAAPLMILSYEDQLAFKQKIVNDLFLRELNFRNVKEITPSPLEINYRNKLRVHVECQGTTFKMGFYVKNSHILVEQTSYDLAYKEIGNILEEIDFLCKKEVLLEDNFIKKNKITSITVKYSEKTGESQVIFESLKQAPFPASFIKRLIEKFDNLNIVQIVCNEEKTKILKLIVLAGKESIEYKIDKLKFNVSSQSFYQVNEKQTNKMYKTLLKSLNLTGSEFIVDAFAGVGTIGMYLAKKAKQVVCVEISKKATLNGKENAKLNSLNNLEFISEDCNRFFDKECTRRQNIDVIVFDPPREGLNKTTINAIIPKSLKRIAYISCNPRTLVRDLKLFTSKGYKIEFVQPFDMFPQTYHVETLALLSKSEV
>NC_011025.1|WP_012498460.1|701484_702813_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MFNDNITAISSGNINQAISIIRICGPDAIEILKKIYTGKIGTDKTITYGWIVDKDKTKIDEVLVNFFIGKNNYIGEDTVEINAHGGVVVTNKILNLILANGARLAERGEFTRRAFLNGRLSLEKAEAINALIHAKTNKQAKIAITQFEPEINQLINSLENELLQIISLVEINIDYSDYNDIEQMDKNKLNKLLDNFQKRIKVVVEKSENASDIYRGINIAIVGKPNTGKSSLLNALIQKDKAIVTDIPGTTRDLVEAEFEINGILFRIIDTAGIRKTDNEIESIGIKKSLEAIDNAKVIIHLHDPLQKDSTEDEQIKKLAKDKIYINVLNKRDLIKNLPEDMVCISAKDNNLYELRNALVKKYNDIDLDDKEVLYNTRQLSLLKQVEYNINDALEGLGQGFGPEVVILDLTKAWENLRSILNKSHDNEALLDNIFSKFCLGK
>NC_011025.1|WP_012498461.1|703094_705389_+|hypothetical-protein
MKSNTIILEEEKILRKKDKVISRFRRRMGDYMRVMLIPLALLLFFLIVEGIFKAVLEEVTLNTNVKLNLQKVVDIFQILIALIPFFITLTIASTFSTNRALGAALAVLGWTFFIGAQSFFISLTPTGQVSLFNSKILTSSRVIDIISQKSGILFVSPNIFVGLFMGIQIAKVVSKLNKTSKKTNTFKGCILLTFILVIFVAIFNALLHISFILSLVYGLESGVKNIENLANDSVNIKNLLYSLILSVALPFENANSFMAISTQQSYLAATLSIFVAPLISFIFFCFTIKGDMKKYAVPFFLFGMMASLFFGRYEVILLTLLIASPFMFFINVTIFGSLISWISSLAGANVGATNLIEFVKDFSVSDKSYLFLGVGLGISVLVIIVTALYVKFTKVGLPGLGSVSSKIYRNELGTDLNYIVFPKYEKNAQVDQTTKLFKKDTELDMLVSAGMVYGKNIQLLTNENLVLDTSEQKRITQKTSHNITSENLVNTEEINYDYSNNDNFKPQSSSTEKTSDLTVTNESWSSDLNLDLSETSEPVAIVQDYEKTTEITPPEDRPLVLKDSTLSTENSSISTTTNKEQESENKENVIVEDKPVLNEKTTTIIFQPNPLKEIPLAPIEDFAILSPLLGDVMDQNENSIDILASSGKFVLANEATIEYVSENKDLFVLNIYGVRMEINLNPNFEKSHKQRLHNRVYLAVGKKVRKGDFLLDVNKKFYSEIGERMIVTIRLLDGNYHVNKASLKSRIEKNDKLFDIHLNEPLQP
>NC_011025.1|WP_041914114.1|705544_705922_+|hypothetical-protein
MNKKAVSVLTLIFAILYYVAILTYFYNFSTMREWNSGTIRAVLISFLVFAIIGKVMCNILASIVAFKTNRNKLGVAFILGIFLNFISLSAAATLLKTAWRKERTLINKNTSESNNNSNNWNSPIA
>NC_011025.1|WP_012498462.1|706095_706491_+|hypothetical-protein
MNKKAVAISSLIFNLIISISWIVLVALIFRFVLLTGDETAARRFLQSYLGLIVLNFLIAVPAFICNILGCVVSFRENNIAAGVLFILSIVMGSFVIGIIAPIVLLSKKSPAKESTPQNPTTISNDQNSAIY
>NC_011025.1|WP_012498463.1|706928_707759_+|AAA-family-ATPase
MEAYWLNELIVKKDNFISGEENTIKTNIDILDKNLNGLISNQLYIFAGRPATGKTTFVLNLILKTIQSLKSNEVLVFFSLEMSIKEVLNRILKINSVLKIENLDLEERLLIVDDVEQNNDKIHSLILDLNKTKKVKAIFIDHLQLLDMSDSTNLIRYEKITRITRELKKLARKLNVNVFAISQLSREFEKRQVNNELAIPVLSDLRESGSIEQDADVVLFLSNQKVDYRFRNMSKCLISIAKNRNGKLASSSCLLNLEKSLFYFTNFNKGKNNEKE

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_011025_1	1.13\|540343\|31\|NC_011025\|PILER-CR	540343-540373	31	NC_011025.1	167502-167532	0	1.0
NC_011025_1	1.45\|540344\|30\|NC_011025\|CRISPRCasFinder,CRT	540344-540373	30	NC_011025.1	167502-167531	0	1.0
NC_011025_1	1.58\|541203\|30\|NC_011025\|CRISPRCasFinder,CRT	541203-541232	30	NC_011025.1	711294-711323	0	1.0
NC_011025_1	1.14\|540409\|31\|NC_011025\|PILER-CR	540409-540439	31	NC_011025.1	720660-720690	1	0.968
NC_011025_1	1.46\|540410\|30\|NC_011025\|CRISPRCasFinder,CRT	540410-540439	30	NC_011025.1	720660-720689	1	0.967
NC_011025_1	1.21\|540871\|31\|NC_011025\|PILER-CR	540871-540901	31	NC_011025.1	709856-709886	2	0.935
NC_011025_1	1.53\|540872\|30\|NC_011025\|CRISPRCasFinder,CRT	540872-540901	30	NC_011025.1	709856-709885	2	0.933

1. spacer 1.13|540343|31|NC_011025|PILER-CR matches to position: 167502-167532, mismatch: 0, identity: 1.0

ttgatagtattgtgacatcaatcatgtaatc	CRISPR spacer
ttgatagtattgtgacatcaatcatgtaatc	Protospacer
*******************************

2. spacer 1.45|540344|30|NC_011025|CRISPRCasFinder,CRT matches to position: 167502-167531, mismatch: 0, identity: 1.0

tgatagtattgtgacatcaatcatgtaatc	CRISPR spacer
tgatagtattgtgacatcaatcatgtaatc	Protospacer
******************************

3. spacer 1.58|541203|30|NC_011025|CRISPRCasFinder,CRT matches to position: 711294-711323, mismatch: 0, identity: 1.0

tttcacacttcttgtattgcaggtgattta	CRISPR spacer
tttcacacttcttgtattgcaggtgattta	Protospacer
******************************

4. spacer 1.14|540409|31|NC_011025|PILER-CR matches to position: 720660-720690, mismatch: 1, identity: 0.968

ttcattttgattatatacttgcttcggcata	CRISPR spacer
ttcattttgattatacacttgcttcggcata	Protospacer
***************.***************

5. spacer 1.46|540410|30|NC_011025|CRISPRCasFinder,CRT matches to position: 720660-720689, mismatch: 1, identity: 0.967

tcattttgattatatacttgcttcggcata	CRISPR spacer
tcattttgattatacacttgcttcggcata	Protospacer
**************.***************

6. spacer 1.21|540871|31|NC_011025|PILER-CR matches to position: 709856-709886, mismatch: 2, identity: 0.935

ttcgaagttttcaaaataaatcgctctgcca	CRISPR spacer
ttcgaagttttcgaaaaaaatcgctctgcca	Protospacer
************.*** **************

7. spacer 1.53|540872|30|NC_011025|CRISPRCasFinder,CRT matches to position: 709856-709885, mismatch: 2, identity: 0.933

tcgaagttttcaaaataaatcgctctgcca	CRISPR spacer
tcgaagttttcgaaaaaaatcgctctgcca	Protospacer
***********.*** **************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011025_1	1.58\|541203\|30\|NC_011025\|CRISPRCasFinder,CRT	541203-541232	30	NC_001942	Mycoplasma phage MAV1, complete genome	4716-4745	0	1.0
NC_011025_1	1.58\|541203\|30\|NC_011025\|CRISPRCasFinder,CRT	541203-541232	30	AF074945	Mycoplasma arthritidis bacteriophage MAV1, complete genome	4716-4745	0	1.0
NC_011025_1	1.14\|540409\|31\|NC_011025\|PILER-CR	540409-540439	31	NC_001942	Mycoplasma phage MAV1, complete genome	14086-14116	1	0.968
NC_011025_1	1.14\|540409\|31\|NC_011025\|PILER-CR	540409-540439	31	AF074945	Mycoplasma arthritidis bacteriophage MAV1, complete genome	14086-14116	1	0.968
NC_011025_1	1.26\|541202\|31\|NC_011025\|PILER-CR	541202-541232	31	NC_001942	Mycoplasma phage MAV1, complete genome	4716-4746	1	0.968
NC_011025_1	1.26\|541202\|31\|NC_011025\|PILER-CR	541202-541232	31	AF074945	Mycoplasma arthritidis bacteriophage MAV1, complete genome	4716-4746	1	0.968
NC_011025_1	1.46\|540410\|30\|NC_011025\|CRISPRCasFinder,CRT	540410-540439	30	NC_001942	Mycoplasma phage MAV1, complete genome	14086-14115	1	0.967
NC_011025_1	1.46\|540410\|30\|NC_011025\|CRISPRCasFinder,CRT	540410-540439	30	AF074945	Mycoplasma arthritidis bacteriophage MAV1, complete genome	14086-14115	1	0.967
NC_011025_1	1.21\|540871\|31\|NC_011025\|PILER-CR	540871-540901	31	NC_001942	Mycoplasma phage MAV1, complete genome	3277-3307	2	0.935
NC_011025_1	1.21\|540871\|31\|NC_011025\|PILER-CR	540871-540901	31	AF074945	Mycoplasma arthritidis bacteriophage MAV1, complete genome	3277-3307	2	0.935
NC_011025_1	1.53\|540872\|30\|NC_011025\|CRISPRCasFinder,CRT	540872-540901	30	NC_001942	Mycoplasma phage MAV1, complete genome	3277-3306	2	0.933
NC_011025_1	1.53\|540872\|30\|NC_011025\|CRISPRCasFinder,CRT	540872-540901	30	AF074945	Mycoplasma arthritidis bacteriophage MAV1, complete genome	3277-3306	2	0.933
NC_011025_2	2.1\|694663\|51\|NC_011025\|CRISPRCasFinder	694663-694713	51	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	664647-664697	3	0.941
NC_011025_1	1.11\|540210\|32\|NC_011025\|PILER-CR	540210-540241	32	MN694791	Marine virus AFVG_250M1163, complete genome	31465-31496	5	0.844
NC_011025_1	1.11\|540210\|32\|NC_011025\|PILER-CR	540210-540241	32	MN694323	Marine virus AFVG_250M1162, complete genome	31473-31504	5	0.844
NC_011025_1	1.29\|541400\|33\|NC_011025\|PILER-CR	541400-541432	33	NZ_CP032091	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence	704960-704992	5	0.848
NC_011025_1	1.43\|540211\|31\|NC_011025\|CRISPRCasFinder,CRT	540211-540241	31	MN694791	Marine virus AFVG_250M1163, complete genome	31466-31496	5	0.839
NC_011025_1	1.43\|540211\|31\|NC_011025\|CRISPRCasFinder,CRT	540211-540241	31	MN694323	Marine virus AFVG_250M1162, complete genome	31474-31504	5	0.839
NC_011025_1	1.59\|541269\|30\|NC_011025\|CRISPRCasFinder,CRT	541269-541298	30	NZ_CP022523	Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence	187392-187421	5	0.833
NC_011025_1	1.61\|541401\|32\|NC_011025\|CRISPRCasFinder,CRT	541401-541432	32	NZ_CP032091	Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence	704960-704991	5	0.844
NC_011025_1	1.20\|540805\|31\|NC_011025\|PILER-CR	540805-540835	31	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	226022-226052	6	0.806
NC_011025_1	1.22\|540937\|31\|NC_011025\|PILER-CR	540937-540967	31	AP013589	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S34-C223, * SEQUENCING IN PROGRESS *	1846-1876	6	0.806
NC_011025_1	1.22\|540937\|31\|NC_011025\|PILER-CR	540937-540967	31	EU794051	Bacteriophage APSE-4 predicted P-loop ATPase (P3) gene, partial cds; P4 pseudogene, complete sequence; Q protein (P5) gene, complete cds; P7 pseudogene, complete sequence; conserved hypothetical protein (P8), putative Shiga-like toxin alpha subunit (P9), conserved hypothetical protein (P10), lambda-like group I holin (P11), lysozyme (P13), conserved hypothetical protein (P14), conserved hypothetical protein (P16), conserved hypothetical protein (P17), terminase (P18), portal protein (P19), and scaffold protein gp8 (P23) genes, complete cds; and head protein (P24) gene, partial cds	3091-3121	6	0.806
NC_011025_1	1.22\|540937\|31\|NC_011025\|PILER-CR	540937-540967	31	EU794050	Bacteriophage APSE-5 predicted P-loop ATPase (P3) gene, partial cds; P4 pseudogene, complete sequence; Q protein (P5), putative Shiga-like toxin beta subunit (P7), conserved hypothetical protein (P8), putative Shiga-like toxin alpha subunit (P9), conserved hypothetical protein (P10), lambda-like group I holin (P11), lysozyme (P13), conserved hypothetical protein (P14), conserved hypothetical protein (P16), conserved hypothetical protein (P17), terminase (P18), portal protein (P19), and scaffold protein gp8 (P23) genes, complete cds; and head protein (P24) gene, partial cds	3102-3132	6	0.806
NC_011025_1	1.32\|541600\|31\|NC_011025\|PILER-CR	541600-541630	31	NC_003240	Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120beta, complete sequence	99636-99666	6	0.806
NC_011025_1	1.44\|540278\|30\|NC_011025\|CRISPRCasFinder,CRT	540278-540307	30	NZ_CP018062	Enterococcus mundtii strain DSM 4838 plasmid pLDW-8, complete sequence	34224-34253	6	0.8
NC_011025_1	1.46\|540410\|30\|NC_011025\|CRISPRCasFinder,CRT	540410-540439	30	NC_017240	Borreliella afzelii PKo plasmid lp32-10, complete sequence	2744-2773	6	0.8
NC_011025_1	1.47\|540476\|30\|NC_011025\|CRISPRCasFinder,CRT	540476-540505	30	KT070867	Bacillus phage PBC2, complete genome	15832-15861	6	0.8
NC_011025_1	1.48\|540542\|30\|NC_011025\|CRISPRCasFinder,CRT	540542-540571	30	AP013379	Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C43	29003-29032	6	0.8
NC_011025_1	1.50\|540674\|30\|NC_011025\|CRISPRCasFinder,CRT	540674-540703	30	AP013379	Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C43	29003-29032	6	0.8
NC_011025_1	1.52\|540806\|30\|NC_011025\|CRISPRCasFinder,CRT	540806-540835	30	NZ_CP039853	Salinimonas sp. KX18D6 plasmid plas12, complete sequence	226022-226051	6	0.8
NC_011025_1	1.54\|540938\|30\|NC_011025\|CRISPRCasFinder,CRT	540938-540967	30	AP013589	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S34-C223, * SEQUENCING IN PROGRESS *	1846-1875	6	0.8
NC_011025_1	1.54\|540938\|30\|NC_011025\|CRISPRCasFinder,CRT	540938-540967	30	EU794051	Bacteriophage APSE-4 predicted P-loop ATPase (P3) gene, partial cds; P4 pseudogene, complete sequence; Q protein (P5) gene, complete cds; P7 pseudogene, complete sequence; conserved hypothetical protein (P8), putative Shiga-like toxin alpha subunit (P9), conserved hypothetical protein (P10), lambda-like group I holin (P11), lysozyme (P13), conserved hypothetical protein (P14), conserved hypothetical protein (P16), conserved hypothetical protein (P17), terminase (P18), portal protein (P19), and scaffold protein gp8 (P23) genes, complete cds; and head protein (P24) gene, partial cds	3091-3120	6	0.8
NC_011025_1	1.54\|540938\|30\|NC_011025\|CRISPRCasFinder,CRT	540938-540967	30	EU794050	Bacteriophage APSE-5 predicted P-loop ATPase (P3) gene, partial cds; P4 pseudogene, complete sequence; Q protein (P5), putative Shiga-like toxin beta subunit (P7), conserved hypothetical protein (P8), putative Shiga-like toxin alpha subunit (P9), conserved hypothetical protein (P10), lambda-like group I holin (P11), lysozyme (P13), conserved hypothetical protein (P14), conserved hypothetical protein (P16), conserved hypothetical protein (P17), terminase (P18), portal protein (P19), and scaffold protein gp8 (P23) genes, complete cds; and head protein (P24) gene, partial cds	3102-3131	6	0.8
NC_011025_1	1.56\|541071\|30\|NC_011025\|CRISPRCasFinder,CRT	541071-541100	30	NC_022879	Enterococcus mundtii QU 25 plasmid pQY182, complete sequence	162809-162838	6	0.8
NC_011025_1	1.11\|540210\|32\|NC_011025\|PILER-CR	540210-540241	32	NC_019772	Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence	154279-154310	7	0.781
NC_011025_1	1.12\|540277\|31\|NC_011025\|PILER-CR	540277-540307	31	NZ_CP018062	Enterococcus mundtii strain DSM 4838 plasmid pLDW-8, complete sequence	34224-34254	7	0.774
NC_011025_1	1.14\|540409\|31\|NC_011025\|PILER-CR	540409-540439	31	NC_017240	Borreliella afzelii PKo plasmid lp32-10, complete sequence	2744-2774	7	0.774
NC_011025_1	1.15\|540475\|31\|NC_011025\|PILER-CR	540475-540505	31	NZ_CP047429	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence	62768-62798	7	0.774
NC_011025_1	1.15\|540475\|31\|NC_011025\|PILER-CR	540475-540505	31	NZ_CP047429	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence	59659-59689	7	0.774
NC_011025_1	1.15\|540475\|31\|NC_011025\|PILER-CR	540475-540505	31	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	37136-37166	7	0.774
NC_011025_1	1.15\|540475\|31\|NC_011025\|PILER-CR	540475-540505	31	NZ_CP046372	Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence	17250-17280	7	0.774
NC_011025_1	1.15\|540475\|31\|NC_011025\|PILER-CR	540475-540505	31	NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	38945-38975	7	0.774
NC_011025_1	1.15\|540475\|31\|NC_011025\|PILER-CR	540475-540505	31	NZ_CP047445	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-8	38714-38744	7	0.774
NC_011025_1	1.16\|540541\|31\|NC_011025\|PILER-CR	540541-540571	31	AP013379	Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C43	29003-29033	7	0.774
NC_011025_1	1.18\|540673\|31\|NC_011025\|PILER-CR	540673-540703	31	AP013379	Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C43	29003-29033	7	0.774
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	KX349303	Cyanophage S-RIM14 isolate Sn_11_0110, complete genome	123820-123851	7	0.781
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	KX349304	Cyanophage S-RIM14 isolate Sn_18_0910, complete genome	123042-123073	7	0.781
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	KX349306	Cyanophage S-RIM14 isolate W1_23_0910, complete genome	123046-123077	7	0.781
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	KX349298	Cyanophage S-RIM14 isolate LIS_02_1110, complete genome	123043-123074	7	0.781
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	KX349299	Cyanophage S-RIM14 isolate LIS_22_0610, complete genome	123043-123074	7	0.781
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	KX349305	Cyanophage S-RIM14 isolate Sn_23_0910, complete genome	123044-123075	7	0.781
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	JF974292	Cyanophage S-SSM2 genomic sequence	122385-122416	7	0.781
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	KX349300	Cyanophage S-RIM14 isolate Np_11_1211, complete genome	123044-123075	7	0.781
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NC_015281	Synechococcus phage S-ShM2, complete genome	123047-123078	7	0.781
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	KX349301	Cyanophage S-RIM14 isolate Np_45_0711, complete genome	123043-123074	7	0.781
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	KX349302	Cyanophage S-RIM14 isolate RW_03_0110, complete genome	123043-123074	7	0.781
NC_011025_1	1.24\|541070\|31\|NC_011025\|PILER-CR	541070-541100	31	NC_022879	Enterococcus mundtii QU 25 plasmid pQY182, complete sequence	162809-162839	7	0.774
NC_011025_1	1.33\|539549\|30\|NC_011025\|CRISPRCasFinder,CRT	539549-539578	30	NZ_CP045340	Vibrio sp. THAF190c plasmid pTHAF190c_b, complete sequence	356842-356871	7	0.767
NC_011025_1	1.34\|539615\|30\|NC_011025\|CRISPRCasFinder,CRT	539615-539644	30	NZ_CP023302	Lactobacillus plantarum strain pc-26 plasmid p.pc-2601, complete sequence	29261-29290	7	0.767
NC_011025_1	1.34\|539615\|30\|NC_011025\|CRISPRCasFinder,CRT	539615-539644	30	CAJCJZ010000002	Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence	44813-44842	7	0.767
NC_011025_1	1.34\|539615\|30\|NC_011025\|CRISPRCasFinder,CRT	539615-539644	30	LT615366	Enterococcus phage VPE25 genome assembly, chromosome: VPE25	39181-39210	7	0.767
NC_011025_1	1.34\|539615\|30\|NC_011025\|CRISPRCasFinder,CRT	539615-539644	30	LT546029	Enterococcus phage VFW genome assembly, chromosome: VFW	39112-39141	7	0.767
NC_011025_1	1.34\|539615\|30\|NC_011025\|CRISPRCasFinder,CRT	539615-539644	30	LT546030	Enterococcus phage VPE25 genome assembly, chromosome: I	39181-39210	7	0.767
NC_011025_1	1.34\|539615\|30\|NC_011025\|CRISPRCasFinder,CRT	539615-539644	30	MT119360	Enterococcus phage nattely, complete genome	39272-39301	7	0.767
NC_011025_1	1.39\|539946\|30\|NC_011025\|CRISPRCasFinder,CRT	539946-539975	30	NZ_CP035412	Bacillus subtilis strain SRCM103622 plasmid unnamed1, complete sequence	40326-40355	7	0.767
NC_011025_1	1.39\|539946\|30\|NC_011025\|CRISPRCasFinder,CRT	539946-539975	30	NC_015149	Bacillus subtilis subsp. natto plasmid pLS32 DNA, complete sequence, strain: IAM 11631	15440-15469	7	0.767
NC_011025_1	1.42\|540145\|30\|NC_011025\|CRISPRCasFinder,CRT	540145-540174	30	MK054227	Sulfolobus spindle-shaped virus strain NL01B.C01.14.SSV, complete genome	12872-12901	7	0.767
NC_011025_1	1.42\|540145\|30\|NC_011025\|CRISPRCasFinder,CRT	540145-540174	30	MK054236	Sulfolobus spindle-shaped virus strain SSV10, complete genome	8019-8048	7	0.767
NC_011025_1	1.42\|540145\|30\|NC_011025\|CRISPRCasFinder,CRT	540145-540174	30	MK054225	Sulfolobus spindle-shaped virus strain NL01B.C01.09.SSV, complete genome	1796-1825	7	0.767
NC_011025_1	1.42\|540145\|30\|NC_011025\|CRISPRCasFinder,CRT	540145-540174	30	MK054224	Sulfolobus spindle-shaped virus strain NL01B.C01.07.SSV, complete genome	14269-14298	7	0.767
NC_011025_1	1.42\|540145\|30\|NC_011025\|CRISPRCasFinder,CRT	540145-540174	30	MK054230	Sulfolobus spindle-shaped virus strain NL01B.C01.22.SSV, complete genome	14114-14143	7	0.767
NC_011025_1	1.42\|540145\|30\|NC_011025\|CRISPRCasFinder,CRT	540145-540174	30	MK054222	Sulfolobus spindle-shaped virus strain NL01B.C01.05.SSV, complete genome	1373-1402	7	0.767
NC_011025_1	1.42\|540145\|30\|NC_011025\|CRISPRCasFinder,CRT	540145-540174	30	MK054226	Sulfolobus spindle-shaped virus strain NL01B.C01.13.SSV, complete genome	1796-1825	7	0.767
NC_011025_1	1.42\|540145\|30\|NC_011025\|CRISPRCasFinder,CRT	540145-540174	30	MK054229	Sulfolobus spindle-shaped virus strain NL01B.C01.20.SSV, complete genome	1796-1825	7	0.767
NC_011025_1	1.42\|540145\|30\|NC_011025\|CRISPRCasFinder,CRT	540145-540174	30	MK054228	Sulfolobus spindle-shaped virus strain NL01B.C01.18.SSV, complete genome	14676-14705	7	0.767
NC_011025_1	1.42\|540145\|30\|NC_011025\|CRISPRCasFinder,CRT	540145-540174	30	MK054220	Sulfolobus spindle-shaped virus strain NL01B.C01.01.SSV, complete genome	14250-14279	7	0.767
NC_011025_1	1.43\|540211\|31\|NC_011025\|CRISPRCasFinder,CRT	540211-540241	31	MH617241	Microviridae sp. isolate ctda54, complete genome	3277-3307	7	0.774
NC_011025_1	1.49\|540608\|30\|NC_011025\|CRISPRCasFinder,CRT	540608-540637	30	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	89434-89463	7	0.767
NC_011025_1	1.51\|540740\|30\|NC_011025\|CRISPRCasFinder,CRT	540740-540769	30	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	89434-89463	7	0.767
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	JF974292	Cyanophage S-SSM2 genomic sequence	122386-122416	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	KX349303	Cyanophage S-RIM14 isolate Sn_11_0110, complete genome	123820-123850	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	KX349304	Cyanophage S-RIM14 isolate Sn_18_0910, complete genome	123042-123072	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	KX349306	Cyanophage S-RIM14 isolate W1_23_0910, complete genome	123046-123076	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	KX349298	Cyanophage S-RIM14 isolate LIS_02_1110, complete genome	123043-123073	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	KX349299	Cyanophage S-RIM14 isolate LIS_22_0610, complete genome	123043-123073	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	KX349305	Cyanophage S-RIM14 isolate Sn_23_0910, complete genome	123044-123074	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	KX349300	Cyanophage S-RIM14 isolate Np_11_1211, complete genome	123044-123074	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NC_015281	Synechococcus phage S-ShM2, complete genome	123047-123077	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	KX349301	Cyanophage S-RIM14 isolate Np_45_0711, complete genome	123043-123073	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	KX349302	Cyanophage S-RIM14 isolate RW_03_0110, complete genome	123043-123073	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP023176	Lactobacillus plantarum strain BDGP2 plasmid pLtBDGP2B, complete sequence	49084-49114	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP028335	Lactobacillus plantarum strain SRCM101167 plasmid unnamed1, complete sequence	37123-37153	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP013754	Lactobacillus plantarum strain DF plasmid unnamed1, complete sequence	46848-46878	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP032745	Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed1, complete sequence	23584-23614	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP023491	Lactobacillus plantarum strain NCIMB 700965 plasmid unamed1, complete sequence	25947-25977	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP046263	Lactobacillus plantarum strain KCCP11226 plasmid pKCCP11226_01, complete sequence	66393-66423	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP013750	Lactobacillus plantarum strain KP plasmid unnamed1, complete sequence	65025-65055	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP017956	Lactobacillus plantarum strain C410L1 plasmid unnamed2, complete sequence	21989-22019	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP026506	Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed1, complete sequence	25353-25383	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NC_021527	Lactobacillus plantarum 16 plasmid Lp16G, complete sequence	32239-32269	7	0.774
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP040376	Lactobacillus plantarum subsp. plantarum strain BNH17 plasmid unnamed2, complete sequence	16376-16406	7	0.774
NC_011025_1	1.58\|541203\|30\|NC_011025\|CRISPRCasFinder,CRT	541203-541232	30	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	345017-345046	7	0.767
NC_011025_1	1.65\|541667\|31\|NC_011025\|CRISPRCasFinder,CRT	541667-541697	31	NZ_CP053834	Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence	117171-117201	7	0.774
NC_011025_1	1.1\|539548\|31\|NC_011025\|PILER-CR	539548-539578	31	NZ_CP045340	Vibrio sp. THAF190c plasmid pTHAF190c_b, complete sequence	356842-356872	8	0.742
NC_011025_1	1.2\|539614\|31\|NC_011025\|PILER-CR	539614-539644	31	NZ_CP023302	Lactobacillus plantarum strain pc-26 plasmid p.pc-2601, complete sequence	29260-29290	8	0.742
NC_011025_1	1.7\|539945\|31\|NC_011025\|PILER-CR	539945-539975	31	NZ_CP035412	Bacillus subtilis strain SRCM103622 plasmid unnamed1, complete sequence	40325-40355	8	0.742
NC_011025_1	1.7\|539945\|31\|NC_011025\|PILER-CR	539945-539975	31	NC_015149	Bacillus subtilis subsp. natto plasmid pLS32 DNA, complete sequence, strain: IAM 11631	15440-15470	8	0.742
NC_011025_1	1.15\|540475\|31\|NC_011025\|PILER-CR	540475-540505	31	NZ_CP017776	Bacillus velezensis strain 9912D plasmid p9912D, complete sequence	310-340	8	0.742
NC_011025_1	1.15\|540475\|31\|NC_011025\|PILER-CR	540475-540505	31	NC_015845	Enterococcus hirae ATCC 9790 plasmid pTG9790, complete sequence	21519-21549	8	0.742
NC_011025_1	1.15\|540475\|31\|NC_011025\|PILER-CR	540475-540505	31	NZ_CP030098	Bacillus amyloliquefaciens strain SH-B74 plasmid pSH-B74, complete sequence	13943-13973	8	0.742
NC_011025_1	1.15\|540475\|31\|NC_011025\|PILER-CR	540475-540505	31	NZ_CP030098	Bacillus amyloliquefaciens strain SH-B74 plasmid pSH-B74, complete sequence	49343-49373	8	0.742
NC_011025_1	1.17\|540607\|31\|NC_011025\|PILER-CR	540607-540637	31	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	89434-89464	8	0.742
NC_011025_1	1.19\|540739\|31\|NC_011025\|PILER-CR	540739-540769	31	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	89434-89464	8	0.742
NC_011025_1	1.22\|540937\|31\|NC_011025\|PILER-CR	540937-540967	31	NC_019358	Clostridium perfringens plasmid pCP8533S12 DNA, complete sequence	2770-2800	8	0.742
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP004876	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence	220903-220934	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NC_017203	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence	251983-252014	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NC_020384	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence	256212-256243	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP013754	Lactobacillus plantarum strain DF plasmid unnamed1, complete sequence	46848-46879	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP032745	Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed1, complete sequence	23584-23615	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	626388-626419	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP015177	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence	214035-214066	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP023491	Lactobacillus plantarum strain NCIMB 700965 plasmid unamed1, complete sequence	25947-25978	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP046263	Lactobacillus plantarum strain KCCP11226 plasmid pKCCP11226_01, complete sequence	66393-66424	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP013750	Lactobacillus plantarum strain KP plasmid unnamed1, complete sequence	65025-65056	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP004861	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence	219340-219371	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP017956	Lactobacillus plantarum strain C410L1 plasmid unnamed2, complete sequence	21989-22020	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP023176	Lactobacillus plantarum strain BDGP2 plasmid pLtBDGP2B, complete sequence	49083-49114	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP026506	Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed1, complete sequence	25353-25384	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NC_021527	Lactobacillus plantarum 16 plasmid Lp16G, complete sequence	32239-32270	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP010091	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence	233532-233563	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP040376	Lactobacillus plantarum subsp. plantarum strain BNH17 plasmid unnamed2, complete sequence	16376-16407	8	0.75
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	NZ_CP028335	Lactobacillus plantarum strain SRCM101167 plasmid unnamed1, complete sequence	37122-37153	8	0.75
NC_011025_1	1.26\|541202\|31\|NC_011025\|PILER-CR	541202-541232	31	CP013001	Bacillus thuringiensis strain XL6 plasmid, complete sequence	345017-345047	8	0.742
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MN966730	Vibrio phage Cilsick, complete genome	39844-39873	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MT460516	Vibrio phage Quinn, complete genome	39823-39852	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MG649967	Vibrio virus Thalassa, complete genome	40206-40235	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MT460515	Vibrio phage Cody, complete genome	39717-39746	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MT448616	Vibrio phage BBMuffin, complete genome	40352-40381	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MT460514	Vibrio phage AG74, complete genome	38983-39012	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MK796244	Vibrio phage Achelous, complete genome	38708-38737	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MT460518	Vibrio phage Direpillow8, complete genome	40695-40724	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MN966731	Vibrio phage Chazly21, complete genome	39465-39494	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MK907780	Vibrio phage Pontus, complete genome	40337-40366	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MK895508	Vibrio phage Brizo, complete genome	35361-35390	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	NC_042095	Vibrio phage Thalassa, complete genome	40206-40235	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MN958086	Vibrio phage Bennett, complete genome	39340-39369	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MT460517	Vibrio phage Athena, complete genome	39671-39700	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MT448617	Vibrio phage River4, complete genome	40482-40511	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MT459144	Vibrio phage Dax, complete genome	39932-39961	8	0.733
NC_011025_1	1.41\|540079\|30\|NC_011025\|CRISPRCasFinder,CRT	540079-540108	30	MN966732	Vibrio phage Chester, complete genome	39850-39879	8	0.733
NC_011025_1	1.43\|540211\|31\|NC_011025\|CRISPRCasFinder,CRT	540211-540241	31	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	375247-375277	8	0.742
NC_011025_1	1.43\|540211\|31\|NC_011025\|CRISPRCasFinder,CRT	540211-540241	31	NZ_CP014203	Clostridium baratii strain CDC51267 plasmid pNPD11_1, complete sequence	35252-35282	8	0.742
NC_011025_1	1.54\|540938\|30\|NC_011025\|CRISPRCasFinder,CRT	540938-540967	30	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	27003-27032	8	0.733
NC_011025_1	1.54\|540938\|30\|NC_011025\|CRISPRCasFinder,CRT	540938-540967	30	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	85192-85221	8	0.733
NC_011025_1	1.54\|540938\|30\|NC_011025\|CRISPRCasFinder,CRT	540938-540967	30	NC_019358	Clostridium perfringens plasmid pCP8533S12 DNA, complete sequence	2770-2799	8	0.733
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP004876	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence	220904-220934	8	0.742
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NC_017203	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence	251984-252014	8	0.742
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NC_020384	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence	256213-256243	8	0.742
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP015177	Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence	214036-214066	8	0.742
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP004861	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence	219341-219371	8	0.742
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP010091	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence	233533-233563	8	0.742
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	626388-626418	8	0.742
NC_011025_1	1.59\|541269\|30\|NC_011025\|CRISPRCasFinder,CRT	541269-541298	30	NC_025137	Acinetobacter pittii strain MS32 plasmid pMS32-3, complete sequence	6666-6695	8	0.733
NC_011025_1	1.59\|541269\|30\|NC_011025\|CRISPRCasFinder,CRT	541269-541298	30	NZ_CP026422	Acinetobacter sp. ACNIH1 plasmid pACI-a283, complete sequence	8889-8918	8	0.733
NC_011025_1	1.61\|541401\|32\|NC_011025\|CRISPRCasFinder,CRT	541401-541432	32	MN013189	Microcystis phage Mic1, complete genome	44343-44374	8	0.75
NC_011025_1	1.63\|541535\|30\|NC_011025\|CRISPRCasFinder,CRT	541535-541564	30	MN855828	Bacteriophage sp. isolate 175, complete genome	1184-1213	8	0.733
NC_011025_1	1.65\|541667\|31\|NC_011025\|CRISPRCasFinder,CRT	541667-541697	31	NC_019924	Clostridium phage phi8074-B1, complete genome	28333-28363	8	0.742
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MN966730	Vibrio phage Cilsick, complete genome	39844-39874	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MT460516	Vibrio phage Quinn, complete genome	39823-39853	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MG649967	Vibrio virus Thalassa, complete genome	40206-40236	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MT460515	Vibrio phage Cody, complete genome	39717-39747	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MT448616	Vibrio phage BBMuffin, complete genome	40352-40382	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MT460514	Vibrio phage AG74, complete genome	38983-39013	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MK796244	Vibrio phage Achelous, complete genome	38708-38738	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MT460518	Vibrio phage Direpillow8, complete genome	40695-40725	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MN966731	Vibrio phage Chazly21, complete genome	39465-39495	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MK907780	Vibrio phage Pontus, complete genome	40337-40367	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MK895508	Vibrio phage Brizo, complete genome	35361-35391	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	NC_042095	Vibrio phage Thalassa, complete genome	40206-40236	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MN958086	Vibrio phage Bennett, complete genome	39340-39370	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MT460517	Vibrio phage Athena, complete genome	39671-39701	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MT448617	Vibrio phage River4, complete genome	40482-40512	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MT459144	Vibrio phage Dax, complete genome	39932-39962	9	0.71
NC_011025_1	1.9\|540078\|31\|NC_011025\|PILER-CR	540078-540108	31	MN966732	Vibrio phage Chester, complete genome	39850-39880	9	0.71
NC_011025_1	1.11\|540210\|32\|NC_011025\|PILER-CR	540210-540241	32	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	375247-375278	9	0.719
NC_011025_1	1.11\|540210\|32\|NC_011025\|PILER-CR	540210-540241	32	NZ_CP014203	Clostridium baratii strain CDC51267 plasmid pNPD11_1, complete sequence	35252-35283	9	0.719
NC_011025_1	1.22\|540937\|31\|NC_011025\|PILER-CR	540937-540967	31	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	85191-85221	9	0.71
NC_011025_1	1.22\|540937\|31\|NC_011025\|PILER-CR	540937-540967	31	NZ_CP024793	Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence	27003-27033	9	0.71
NC_011025_1	1.27\|541268\|31\|NC_011025\|PILER-CR	541268-541298	31	NC_025137	Acinetobacter pittii strain MS32 plasmid pMS32-3, complete sequence	6666-6696	9	0.71
NC_011025_1	1.27\|541268\|31\|NC_011025\|PILER-CR	541268-541298	31	NZ_CP026422	Acinetobacter sp. ACNIH1 plasmid pACI-a283, complete sequence	8889-8919	9	0.71
NC_011025_1	1.29\|541400\|33\|NC_011025\|PILER-CR	541400-541432	33	MN013189	Microcystis phage Mic1, complete genome	44342-44374	9	0.727
NC_011025_1	1.43\|540211\|31\|NC_011025\|CRISPRCasFinder,CRT	540211-540241	31	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	391213-391243	9	0.71
NC_011025_1	1.43\|540211\|31\|NC_011025\|CRISPRCasFinder,CRT	540211-540241	31	MN855768	Siphoviridae sp. isolate 183, complete genome	12823-12853	9	0.71
NC_011025_1	1.47\|540476\|30\|NC_011025\|CRISPRCasFinder,CRT	540476-540505	30	LR026976	Bacillus pumilus isolate 1 genome assembly, plasmid: p576	22437-22466	9	0.7
NC_011025_1	1.55\|541004\|31\|NC_011025\|CRISPRCasFinder,CRT	541004-541034	31	JQ062992	Bacillus phage phIS3501, complete genome	13361-13391	9	0.71
NC_011025_1	1.61\|541401\|32\|NC_011025\|CRISPRCasFinder,CRT	541401-541432	32	MN693352	Marine virus AFVG_25M558, complete genome	26479-26510	9	0.719
NC_011025_1	1.65\|541667\|31\|NC_011025\|CRISPRCasFinder,CRT	541667-541697	31	NZ_CP040853	Lactobacillus murinus strain V10 plasmid unnamed, complete sequence	46338-46368	9	0.71
NC_011025_1	1.11\|540210\|32\|NC_011025\|PILER-CR	540210-540241	32	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	391212-391243	10	0.688
NC_011025_1	1.11\|540210\|32\|NC_011025\|PILER-CR	540210-540241	32	MN855768	Siphoviridae sp. isolate 183, complete genome	12822-12853	10	0.688
NC_011025_1	1.23\|541003\|32\|NC_011025\|PILER-CR	541003-541034	32	JQ062992	Bacillus phage phIS3501, complete genome	13360-13391	10	0.688

1. spacer 1.58|541203|30|NC_011025|CRISPRCasFinder,CRT matches to NC_001942 (Mycoplasma phage MAV1, complete genome) position: , mismatch: 0, identity: 1.0

tttcacacttcttgtattgcaggtgattta	CRISPR spacer
tttcacacttcttgtattgcaggtgattta	Protospacer
******************************

2. spacer 1.58|541203|30|NC_011025|CRISPRCasFinder,CRT matches to AF074945 (Mycoplasma arthritidis bacteriophage MAV1, complete genome) position: , mismatch: 0, identity: 1.0

tttcacacttcttgtattgcaggtgattta	CRISPR spacer
tttcacacttcttgtattgcaggtgattta	Protospacer
******************************

3. spacer 1.14|540409|31|NC_011025|PILER-CR matches to NC_001942 (Mycoplasma phage MAV1, complete genome) position: , mismatch: 1, identity: 0.968

ttcattttgattatatacttgcttcggcata	CRISPR spacer
ttcattttgattatacacttgcttcggcata	Protospacer
***************.***************

4. spacer 1.14|540409|31|NC_011025|PILER-CR matches to AF074945 (Mycoplasma arthritidis bacteriophage MAV1, complete genome) position: , mismatch: 1, identity: 0.968

ttcattttgattatatacttgcttcggcata	CRISPR spacer
ttcattttgattatacacttgcttcggcata	Protospacer
***************.***************

5. spacer 1.26|541202|31|NC_011025|PILER-CR matches to NC_001942 (Mycoplasma phage MAV1, complete genome) position: , mismatch: 1, identity: 0.968

ttttcacacttcttgtattgcaggtgattta	CRISPR spacer
gtttcacacttcttgtattgcaggtgattta	Protospacer
 ******************************

6. spacer 1.26|541202|31|NC_011025|PILER-CR matches to AF074945 (Mycoplasma arthritidis bacteriophage MAV1, complete genome) position: , mismatch: 1, identity: 0.968

ttttcacacttcttgtattgcaggtgattta	CRISPR spacer
gtttcacacttcttgtattgcaggtgattta	Protospacer
 ******************************

7. spacer 1.46|540410|30|NC_011025|CRISPRCasFinder,CRT matches to NC_001942 (Mycoplasma phage MAV1, complete genome) position: , mismatch: 1, identity: 0.967

tcattttgattatatacttgcttcggcata	CRISPR spacer
tcattttgattatacacttgcttcggcata	Protospacer
**************.***************

8. spacer 1.46|540410|30|NC_011025|CRISPRCasFinder,CRT matches to AF074945 (Mycoplasma arthritidis bacteriophage MAV1, complete genome) position: , mismatch: 1, identity: 0.967

tcattttgattatatacttgcttcggcata	CRISPR spacer
tcattttgattatacacttgcttcggcata	Protospacer
**************.***************

9. spacer 1.21|540871|31|NC_011025|PILER-CR matches to NC_001942 (Mycoplasma phage MAV1, complete genome) position: , mismatch: 2, identity: 0.935

ttcgaagttttcaaaataaatcgctctgcca	CRISPR spacer
ttcgaagttttcgaaaaaaatcgctctgcca	Protospacer
************.*** **************

10. spacer 1.21|540871|31|NC_011025|PILER-CR matches to AF074945 (Mycoplasma arthritidis bacteriophage MAV1, complete genome) position: , mismatch: 2, identity: 0.935

ttcgaagttttcaaaataaatcgctctgcca	CRISPR spacer
ttcgaagttttcgaaaaaaatcgctctgcca	Protospacer
************.*** **************

11. spacer 1.53|540872|30|NC_011025|CRISPRCasFinder,CRT matches to NC_001942 (Mycoplasma phage MAV1, complete genome) position: , mismatch: 2, identity: 0.933

tcgaagttttcaaaataaatcgctctgcca	CRISPR spacer
tcgaagttttcgaaaaaaatcgctctgcca	Protospacer
***********.*** **************

12. spacer 1.53|540872|30|NC_011025|CRISPRCasFinder,CRT matches to AF074945 (Mycoplasma arthritidis bacteriophage MAV1, complete genome) position: , mismatch: 2, identity: 0.933

tcgaagttttcaaaataaatcgctctgcca	CRISPR spacer
tcgaagttttcgaaaaaaatcgctctgcca	Protospacer
***********.*** **************

13. spacer 2.1|694663|51|NC_011025|CRISPRCasFinder matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 3, identity: 0.941

tagattggcaacctaatgttctaccattgaactacatccgc-atggtgcaag	CRISPR spacer
cagattggcaacctgatgttctaccattgaactacatccgcaatggtgcaa-	Protospacer
.*************.************************** *********

14. spacer 1.11|540210|32|NC_011025|PILER-CR matches to MN694791 (Marine virus AFVG_250M1163, complete genome) position: , mismatch: 5, identity: 0.844

ttcttaacctttcagttaattctgcaatttta--	CRISPR spacer
tacttaacctttcatttaagtctgc--ttttaac	Protospacer
* ************ **** *****  *****

15. spacer 1.11|540210|32|NC_011025|PILER-CR matches to MN694323 (Marine virus AFVG_250M1162, complete genome) position: , mismatch: 5, identity: 0.844

ttcttaacctttcagttaattctgcaatttta--	CRISPR spacer
tacttaacctttcatttaagtctgc--ttttaac	Protospacer
* ************ **** *****  *****

16. spacer 1.29|541400|33|NC_011025|PILER-CR matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.848

ctcttaattcttttaaactgtctgctttgttga-	CRISPR spacer
ctcttaattctttaatactgtctgc-taattgat	Protospacer
************* * ********* * .****

17. spacer 1.43|540211|31|NC_011025|CRISPRCasFinder,CRT matches to MN694791 (Marine virus AFVG_250M1163, complete genome) position: , mismatch: 5, identity: 0.839

tcttaacctttcagttaattctgcaatttta--	CRISPR spacer
acttaacctttcatttaagtctgc--ttttaac	Protospacer
 ************ **** *****  *****

18. spacer 1.43|540211|31|NC_011025|CRISPRCasFinder,CRT matches to MN694323 (Marine virus AFVG_250M1162, complete genome) position: , mismatch: 5, identity: 0.839

tcttaacctttcagttaattctgcaatttta--	CRISPR spacer
acttaacctttcatttaagtctgc--ttttaac	Protospacer
 ************ **** *****  *****

19. spacer 1.59|541269|30|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 5, identity: 0.833

aaaaccaggccactatatttttataaaaat	CRISPR spacer
aaataaaggccacactatttttataaaaat	Protospacer
***   *******  ***************

20. spacer 1.61|541401|32|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP032091 (Pseudoalteromonas donghaensis strain HJ51 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844

tcttaattcttttaaactgtctgctttgttga-	CRISPR spacer
tcttaattctttaatactgtctgc-taattgat	Protospacer
************ * ********* * .****

21. spacer 1.20|540805|31|NC_011025|PILER-CR matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 6, identity: 0.806

ttgataaaaccagtgcaaaattgattggata	CRISPR spacer
ttgataaatccagtgcaaagttgattaaagc	Protospacer
******** **********.******..*

22. spacer 1.22|540937|31|NC_011025|PILER-CR matches to AP013589 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S34-C223, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.806

--tggtcactataaataacttcaataaaatttt	CRISPR spacer
tctagcaac--taaataacttctataaaatttt	Protospacer
  *.*. **  *********** **********

23. spacer 1.22|540937|31|NC_011025|PILER-CR matches to EU794051 (Bacteriophage APSE-4 predicted P-loop ATPase (P3) gene, partial cds; P4 pseudogene, complete sequence; Q protein (P5) gene, complete cds; P7 pseudogene, complete sequence; conserved hypothetical protein (P8), putative Shiga-like toxin alpha subunit (P9), conserved hypothetical protein (P10), lambda-like group I holin (P11), lysozyme (P13), conserved hypothetical protein (P14), conserved hypothetical protein (P16), conserved hypothetical protein (P17), terminase (P18), portal protein (P19), and scaffold protein gp8 (P23) genes, complete cds; and head protein (P24) gene, partial cds) position: , mismatch: 6, identity: 0.806

tggtcactataaataacttcaataaaatttt	CRISPR spacer
tgattgctataaattacttctataaaatttg	Protospacer
**.*..******** ***** *********

24. spacer 1.22|540937|31|NC_011025|PILER-CR matches to EU794050 (Bacteriophage APSE-5 predicted P-loop ATPase (P3) gene, partial cds; P4 pseudogene, complete sequence; Q protein (P5), putative Shiga-like toxin beta subunit (P7), conserved hypothetical protein (P8), putative Shiga-like toxin alpha subunit (P9), conserved hypothetical protein (P10), lambda-like group I holin (P11), lysozyme (P13), conserved hypothetical protein (P14), conserved hypothetical protein (P16), conserved hypothetical protein (P17), terminase (P18), portal protein (P19), and scaffold protein gp8 (P23) genes, complete cds; and head protein (P24) gene, partial cds) position: , mismatch: 6, identity: 0.806

tggtcactataaataacttcaataaaatttt	CRISPR spacer
tgattgctataaattacttctataaaatttg	Protospacer
**.*..******** ***** *********

25. spacer 1.32|541600|31|NC_011025|PILER-CR matches to NC_003240 (Nostoc sp. PCC 7120 = FACHB-418 plasmid pCC7120beta, complete sequence) position: , mismatch: 6, identity: 0.806

ctttttcattgctactctaattg---ggtttgcc	CRISPR spacer
ctttttcattgctcccctaattgagaagttt---	Protospacer
************* *.*******   .****

26. spacer 1.44|540278|30|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP018062 (Enterococcus mundtii strain DSM 4838 plasmid pLDW-8, complete sequence) position: , mismatch: 6, identity: 0.8

attta---taataattttcatgcgtaaattcct	CRISPR spacer
---taaacgaataaatttcatgcttaaattcct	Protospacer
   **    ***** ******** *********

27. spacer 1.46|540410|30|NC_011025|CRISPRCasFinder,CRT matches to NC_017240 (Borreliella afzelii PKo plasmid lp32-10, complete sequence) position: , mismatch: 6, identity: 0.8

tcattttgattatatacttgcttcggcata	CRISPR spacer
tcattttgattatttacttggtttttaata	Protospacer
************* ****** **.   ***

28. spacer 1.47|540476|30|NC_011025|CRISPRCasFinder,CRT matches to KT070867 (Bacillus phage PBC2, complete genome) position: , mismatch: 6, identity: 0.8

taatgataataacgattatgatctagttgt--	CRISPR spacer
gaatgataataaagattatga--tagctattt	Protospacer
 *********** ********  ***.*.*

29. spacer 1.48|540542|30|NC_011025|CRISPRCasFinder,CRT matches to AP013379 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C43) position: , mismatch: 6, identity: 0.8

tcagccagaattgttttttagtcaatcagt	CRISPR spacer
taatactaaattgttttttagtccatcagt	Protospacer
* *  * .*************** ******

30. spacer 1.50|540674|30|NC_011025|CRISPRCasFinder,CRT matches to AP013379 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C43) position: , mismatch: 6, identity: 0.8

tcagccagaattgttttttagtcaatcagt	CRISPR spacer
taatactaaattgttttttagtccatcagt	Protospacer
* *  * .*************** ******

31. spacer 1.52|540806|30|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 6, identity: 0.8

tgataaaaccagtgcaaaattgattggata	CRISPR spacer
tgataaatccagtgcaaagttgattaaagc	Protospacer
******* **********.******..*

32. spacer 1.54|540938|30|NC_011025|CRISPRCasFinder,CRT matches to AP013589 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C23-MedDCM-OCT-S34-C223, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

ggtcacta-----taaataacttcaataaaatttt	CRISPR spacer
-----ctagcaactaaataacttctataaaatttt	Protospacer
     ***     *********** **********

33. spacer 1.54|540938|30|NC_011025|CRISPRCasFinder,CRT matches to EU794051 (Bacteriophage APSE-4 predicted P-loop ATPase (P3) gene, partial cds; P4 pseudogene, complete sequence; Q protein (P5) gene, complete cds; P7 pseudogene, complete sequence; conserved hypothetical protein (P8), putative Shiga-like toxin alpha subunit (P9), conserved hypothetical protein (P10), lambda-like group I holin (P11), lysozyme (P13), conserved hypothetical protein (P14), conserved hypothetical protein (P16), conserved hypothetical protein (P17), terminase (P18), portal protein (P19), and scaffold protein gp8 (P23) genes, complete cds; and head protein (P24) gene, partial cds) position: , mismatch: 6, identity: 0.8

ggtcactataaataacttcaataaaatttt	CRISPR spacer
gattgctataaattacttctataaaatttg	Protospacer
*.*..******** ***** *********

34. spacer 1.54|540938|30|NC_011025|CRISPRCasFinder,CRT matches to EU794050 (Bacteriophage APSE-5 predicted P-loop ATPase (P3) gene, partial cds; P4 pseudogene, complete sequence; Q protein (P5), putative Shiga-like toxin beta subunit (P7), conserved hypothetical protein (P8), putative Shiga-like toxin alpha subunit (P9), conserved hypothetical protein (P10), lambda-like group I holin (P11), lysozyme (P13), conserved hypothetical protein (P14), conserved hypothetical protein (P16), conserved hypothetical protein (P17), terminase (P18), portal protein (P19), and scaffold protein gp8 (P23) genes, complete cds; and head protein (P24) gene, partial cds) position: , mismatch: 6, identity: 0.8

ggtcactataaataacttcaataaaatttt	CRISPR spacer
gattgctataaattacttctataaaatttg	Protospacer
*.*..******** ***** *********

35. spacer 1.56|541071|30|NC_011025|CRISPRCasFinder,CRT matches to NC_022879 (Enterococcus mundtii QU 25 plasmid pQY182, complete sequence) position: , mismatch: 6, identity: 0.8

ctttttctcttttagcatcggaaaaaataa	CRISPR spacer
aatttactcttttagcatcggaaaattgaa	Protospacer
  *** *******************   **

36. spacer 1.11|540210|32|NC_011025|PILER-CR matches to NC_019772 (Anabaena cylindrica PCC 7122 plasmid pANACY.01, complete sequence) position: , mismatch: 7, identity: 0.781

ttcttaacctttcagttaattct-gcaatttta	CRISPR spacer
ttcttaaccttttacttaattctaaccatgtc-	Protospacer
************.* ******** .* ** *.

37. spacer 1.12|540277|31|NC_011025|PILER-CR matches to NZ_CP018062 (Enterococcus mundtii strain DSM 4838 plasmid pLDW-8, complete sequence) position: , mismatch: 7, identity: 0.774

tattta---taataattttcatgcgtaaattcct	CRISPR spacer
---ctaaacgaataaatttcatgcttaaattcct	Protospacer
   .**    ***** ******** *********

38. spacer 1.14|540409|31|NC_011025|PILER-CR matches to NC_017240 (Borreliella afzelii PKo plasmid lp32-10, complete sequence) position: , mismatch: 7, identity: 0.774

ttcattttgattatatacttgcttcggcata	CRISPR spacer
atcattttgattatttacttggtttttaata	Protospacer
 ************* ****** **.   ***

39. spacer 1.15|540475|31|NC_011025|PILER-CR matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 7, identity: 0.774

ttaatgataataacgattatgatctagttgt	CRISPR spacer
ttaatgaaaataacgagtatgataaatattt	Protospacer
******* ******** ******  *  * *

40. spacer 1.15|540475|31|NC_011025|PILER-CR matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 7, identity: 0.774

ttaatgataataacgattatgatctagttgt	CRISPR spacer
ttaatgaaaataacgagtatgataaatattt	Protospacer
******* ******** ******  *  * *

41. spacer 1.15|540475|31|NC_011025|PILER-CR matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 7, identity: 0.774

ttaatgataataacgattatgatctagttgt	CRISPR spacer
ttaatgaaaataacgagtatgataaatattt	Protospacer
******* ******** ******  *  * *

42. spacer 1.15|540475|31|NC_011025|PILER-CR matches to NZ_CP046372 (Spiroplasma citri strain LB 319 plasmid pScpLB319-1, complete sequence) position: , mismatch: 7, identity: 0.774

ttaatgataataacgattatgatctagttgt	CRISPR spacer
ttaatgaaaataacgagtatgataaatattt	Protospacer
******* ******** ******  *  * *

43. spacer 1.15|540475|31|NC_011025|PILER-CR matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 7, identity: 0.774

ttaatgataataacgattatgatctagttgt	CRISPR spacer
ttaatgaaaataacgagtatgataaatattt	Protospacer
******* ******** ******  *  * *

44. spacer 1.15|540475|31|NC_011025|PILER-CR matches to NZ_CP047445 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-8) position: , mismatch: 7, identity: 0.774

ttaatgataataacgattatgatctagttgt	CRISPR spacer
ttaatgaaaataacgagtatgataaatattt	Protospacer
******* ******** ******  *  * *

45. spacer 1.16|540541|31|NC_011025|PILER-CR matches to AP013379 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C43) position: , mismatch: 7, identity: 0.774

ttcagccagaattgttttttagtcaatcagt	CRISPR spacer
gtaatactaaattgttttttagtccatcagt	Protospacer
 * *  * .*************** ******

46. spacer 1.18|540673|31|NC_011025|PILER-CR matches to AP013379 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G14, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C43) position: , mismatch: 7, identity: 0.774

ttcagccagaattgttttttagtcaatcagt	CRISPR spacer
gtaatactaaattgttttttagtccatcagt	Protospacer
 * *  * .*************** ******

47. spacer 1.23|541003|32|NC_011025|PILER-CR matches to KX349303 (Cyanophage S-RIM14 isolate Sn_11_0110, complete genome) position: , mismatch: 7, identity: 0.781

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ttagctgcttctaaagaattgaaattgattga	Protospacer
*  *  ****.****************** .*

48. spacer 1.23|541003|32|NC_011025|PILER-CR matches to KX349304 (Cyanophage S-RIM14 isolate Sn_18_0910, complete genome) position: , mismatch: 7, identity: 0.781

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ttagctgcttctaaagaattgaaattgattga	Protospacer
*  *  ****.****************** .*

49. spacer 1.23|541003|32|NC_011025|PILER-CR matches to KX349306 (Cyanophage S-RIM14 isolate W1_23_0910, complete genome) position: , mismatch: 7, identity: 0.781

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ttagctgcttctaaagaattgaaattgattga	Protospacer
*  *  ****.****************** .*

50. spacer 1.23|541003|32|NC_011025|PILER-CR matches to KX349298 (Cyanophage S-RIM14 isolate LIS_02_1110, complete genome) position: , mismatch: 7, identity: 0.781

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ttagctgcttctaaagaattgaaattgattga	Protospacer
*  *  ****.****************** .*

51. spacer 1.23|541003|32|NC_011025|PILER-CR matches to KX349299 (Cyanophage S-RIM14 isolate LIS_22_0610, complete genome) position: , mismatch: 7, identity: 0.781

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ttagctgcttctaaagaattgaaattgattga	Protospacer
*  *  ****.****************** .*

52. spacer 1.23|541003|32|NC_011025|PILER-CR matches to KX349305 (Cyanophage S-RIM14 isolate Sn_23_0910, complete genome) position: , mismatch: 7, identity: 0.781

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ttagctgcttctaaagaattgaaattgattga	Protospacer
*  *  ****.****************** .*

53. spacer 1.23|541003|32|NC_011025|PILER-CR matches to JF974292 (Cyanophage S-SSM2 genomic sequence) position: , mismatch: 7, identity: 0.781

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ttagctgcttctaaagaattgaaattgattga	Protospacer
*  *  ****.****************** .*

54. spacer 1.23|541003|32|NC_011025|PILER-CR matches to KX349300 (Cyanophage S-RIM14 isolate Np_11_1211, complete genome) position: , mismatch: 7, identity: 0.781

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ttagctgcttctaaagaattgaaattgattga	Protospacer
*  *  ****.****************** .*

55. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NC_015281 (Synechococcus phage S-ShM2, complete genome) position: , mismatch: 7, identity: 0.781

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ttagctgcttctaaagaattgaaattgattga	Protospacer
*  *  ****.****************** .*

56. spacer 1.23|541003|32|NC_011025|PILER-CR matches to KX349301 (Cyanophage S-RIM14 isolate Np_45_0711, complete genome) position: , mismatch: 7, identity: 0.781

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ttagctgcttctaaagaattgaaattgattga	Protospacer
*  *  ****.****************** .*

57. spacer 1.23|541003|32|NC_011025|PILER-CR matches to KX349302 (Cyanophage S-RIM14 isolate RW_03_0110, complete genome) position: , mismatch: 7, identity: 0.781

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ttagctgcttctaaagaattgaaattgattga	Protospacer
*  *  ****.****************** .*

58. spacer 1.24|541070|31|NC_011025|PILER-CR matches to NC_022879 (Enterococcus mundtii QU 25 plasmid pQY182, complete sequence) position: , mismatch: 7, identity: 0.774

tctttttctcttttagcatcggaaaaaataa	CRISPR spacer
aaatttactcttttagcatcggaaaattgaa	Protospacer
   *** *******************   **

59. spacer 1.33|539549|30|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP045340 (Vibrio sp. THAF190c plasmid pTHAF190c_b, complete sequence) position: , mismatch: 7, identity: 0.767

atttaatagaacaattaaacctgattatat	CRISPR spacer
tttcgatagaacaattaagccagattattg	Protospacer
 **..*************.** ******

60. spacer 1.34|539615|30|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP023302 (Lactobacillus plantarum strain pc-26 plasmid p.pc-2601, complete sequence) position: , mismatch: 7, identity: 0.767

aaatttgttatctaataattcagcgatatt	CRISPR spacer
gcaatggttttctaataattcaccgatata	Protospacer
. * * *** ************ ******

61. spacer 1.34|539615|30|NC_011025|CRISPRCasFinder,CRT matches to CAJCJZ010000002 (Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence) position: , mismatch: 7, identity: 0.767

aaatttgttatctaataattcagcgatatt	CRISPR spacer
aaattttttatctaataattcgtgcataac	Protospacer
****** **************.   *** .

62. spacer 1.34|539615|30|NC_011025|CRISPRCasFinder,CRT matches to LT615366 (Enterococcus phage VPE25 genome assembly, chromosome: VPE25) position: , mismatch: 7, identity: 0.767

aaatttgttatctaataattcagcgatatt	CRISPR spacer
aaattttttatctaataattcgtgcataac	Protospacer
****** **************.   *** .

63. spacer 1.34|539615|30|NC_011025|CRISPRCasFinder,CRT matches to LT546029 (Enterococcus phage VFW genome assembly, chromosome: VFW) position: , mismatch: 7, identity: 0.767

aaatttgttatctaataattcagcgatatt	CRISPR spacer
aaattttttatctaataattcgtgcataac	Protospacer
****** **************.   *** .

64. spacer 1.34|539615|30|NC_011025|CRISPRCasFinder,CRT matches to LT546030 (Enterococcus phage VPE25 genome assembly, chromosome: I) position: , mismatch: 7, identity: 0.767

aaatttgttatctaataattcagcgatatt	CRISPR spacer
aaattttttatctaataattcgtgcataac	Protospacer
****** **************.   *** .

65. spacer 1.34|539615|30|NC_011025|CRISPRCasFinder,CRT matches to MT119360 (Enterococcus phage nattely, complete genome) position: , mismatch: 7, identity: 0.767

aaatttgttatctaataattcagcgatatt	CRISPR spacer
aaattttttatctaataattcgtgcataac	Protospacer
****** **************.   *** .

66. spacer 1.39|539946|30|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP035412 (Bacillus subtilis strain SRCM103622 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

tattttcagttcaaatttgcttaatacctt	CRISPR spacer
caaagccagtttaaatttgcttaatatctt	Protospacer
.*   .*****.**************.***

67. spacer 1.39|539946|30|NC_011025|CRISPRCasFinder,CRT matches to NC_015149 (Bacillus subtilis subsp. natto plasmid pLS32 DNA, complete sequence, strain: IAM 11631) position: , mismatch: 7, identity: 0.767

tattttcagttcaaatttgcttaatacctt	CRISPR spacer
caaagccagtttaaatttgcttaatatctt	Protospacer
.*   .*****.**************.***

68. spacer 1.42|540145|30|NC_011025|CRISPRCasFinder,CRT matches to MK054227 (Sulfolobus spindle-shaped virus strain NL01B.C01.14.SSV, complete genome) position: , mismatch: 7, identity: 0.767

attaacttttgttatgctgtgaaaaccgta	CRISPR spacer
accgaatattgttatgctttgaaaaccgtt	Protospacer
*...* * ********** **********

69. spacer 1.42|540145|30|NC_011025|CRISPRCasFinder,CRT matches to MK054236 (Sulfolobus spindle-shaped virus strain SSV10, complete genome) position: , mismatch: 7, identity: 0.767

attaacttttgttatgctgtgaaaaccgta	CRISPR spacer
accgaatattgttatgctttgaaaaccgtt	Protospacer
*...* * ********** **********

70. spacer 1.42|540145|30|NC_011025|CRISPRCasFinder,CRT matches to MK054225 (Sulfolobus spindle-shaped virus strain NL01B.C01.09.SSV, complete genome) position: , mismatch: 7, identity: 0.767

attaacttttgttatgctgtgaaaaccgta	CRISPR spacer
accgaatattgttatgctttgaaaaccgtt	Protospacer
*...* * ********** **********

71. spacer 1.42|540145|30|NC_011025|CRISPRCasFinder,CRT matches to MK054224 (Sulfolobus spindle-shaped virus strain NL01B.C01.07.SSV, complete genome) position: , mismatch: 7, identity: 0.767

attaacttttgttatgctgtgaaaaccgta	CRISPR spacer
accgaatattgttatgctttgaaaaccgtt	Protospacer
*...* * ********** **********

72. spacer 1.42|540145|30|NC_011025|CRISPRCasFinder,CRT matches to MK054230 (Sulfolobus spindle-shaped virus strain NL01B.C01.22.SSV, complete genome) position: , mismatch: 7, identity: 0.767

attaacttttgttatgctgtgaaaaccgta	CRISPR spacer
accgaatattgttatgctttgaaaaccgtt	Protospacer
*...* * ********** **********

73. spacer 1.42|540145|30|NC_011025|CRISPRCasFinder,CRT matches to MK054222 (Sulfolobus spindle-shaped virus strain NL01B.C01.05.SSV, complete genome) position: , mismatch: 7, identity: 0.767

attaacttttgttatgctgtgaaaaccgta	CRISPR spacer
accgaatattgttatgctttgaaaaccgtt	Protospacer
*...* * ********** **********

74. spacer 1.42|540145|30|NC_011025|CRISPRCasFinder,CRT matches to MK054226 (Sulfolobus spindle-shaped virus strain NL01B.C01.13.SSV, complete genome) position: , mismatch: 7, identity: 0.767

attaacttttgttatgctgtgaaaaccgta	CRISPR spacer
accgaatattgttatgctttgaaaaccgtt	Protospacer
*...* * ********** **********

75. spacer 1.42|540145|30|NC_011025|CRISPRCasFinder,CRT matches to MK054229 (Sulfolobus spindle-shaped virus strain NL01B.C01.20.SSV, complete genome) position: , mismatch: 7, identity: 0.767

attaacttttgttatgctgtgaaaaccgta	CRISPR spacer
accgaatattgttatgctttgaaaaccgtt	Protospacer
*...* * ********** **********

76. spacer 1.42|540145|30|NC_011025|CRISPRCasFinder,CRT matches to MK054228 (Sulfolobus spindle-shaped virus strain NL01B.C01.18.SSV, complete genome) position: , mismatch: 7, identity: 0.767

attaacttttgttatgctgtgaaaaccgta	CRISPR spacer
accgaatattgttatgctttgaaaaccgtt	Protospacer
*...* * ********** **********

77. spacer 1.42|540145|30|NC_011025|CRISPRCasFinder,CRT matches to MK054220 (Sulfolobus spindle-shaped virus strain NL01B.C01.01.SSV, complete genome) position: , mismatch: 7, identity: 0.767

attaacttttgttatgctgtgaaaaccgta	CRISPR spacer
accgaatattgttatgctttgaaaaccgtt	Protospacer
*...* * ********** **********

78. spacer 1.43|540211|31|NC_011025|CRISPRCasFinder,CRT matches to MH617241 (Microviridae sp. isolate ctda54, complete genome) position: , mismatch: 7, identity: 0.774

tcttaacctttcagttaattctgcaatttta	CRISPR spacer
tttgattctttcagttgattctgcaatttgt	Protospacer
*.* * .*********.************

79. spacer 1.49|540608|30|NC_011025|CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 7, identity: 0.767

ccagccagcattactttttagtcaatcagt	CRISPR spacer
tcagccagcatgactttttcgtcatcctga	Protospacer
.********** ******* **** .* *

80. spacer 1.51|540740|30|NC_011025|CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 7, identity: 0.767

ccagccagcattactttttagtcaatcagt	CRISPR spacer
tcagccagcatgactttttcgtcatcctga	Protospacer
.********** ******* **** .* *

81. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to JF974292 (Cyanophage S-SSM2 genomic sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
tagctgcttctaaagaattgaaattgattga	Protospacer
  *  ****.****************** .*

82. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to KX349303 (Cyanophage S-RIM14 isolate Sn_11_0110, complete genome) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
tagctgcttctaaagaattgaaattgattga	Protospacer
  *  ****.****************** .*

83. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to KX349304 (Cyanophage S-RIM14 isolate Sn_18_0910, complete genome) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
tagctgcttctaaagaattgaaattgattga	Protospacer
  *  ****.****************** .*

84. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to KX349306 (Cyanophage S-RIM14 isolate W1_23_0910, complete genome) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
tagctgcttctaaagaattgaaattgattga	Protospacer
  *  ****.****************** .*

85. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to KX349298 (Cyanophage S-RIM14 isolate LIS_02_1110, complete genome) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
tagctgcttctaaagaattgaaattgattga	Protospacer
  *  ****.****************** .*

86. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to KX349299 (Cyanophage S-RIM14 isolate LIS_22_0610, complete genome) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
tagctgcttctaaagaattgaaattgattga	Protospacer
  *  ****.****************** .*

87. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to KX349305 (Cyanophage S-RIM14 isolate Sn_23_0910, complete genome) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
tagctgcttctaaagaattgaaattgattga	Protospacer
  *  ****.****************** .*

88. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to KX349300 (Cyanophage S-RIM14 isolate Np_11_1211, complete genome) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
tagctgcttctaaagaattgaaattgattga	Protospacer
  *  ****.****************** .*

89. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NC_015281 (Synechococcus phage S-ShM2, complete genome) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
tagctgcttctaaagaattgaaattgattga	Protospacer
  *  ****.****************** .*

90. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to KX349301 (Cyanophage S-RIM14 isolate Np_45_0711, complete genome) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
tagctgcttctaaagaattgaaattgattga	Protospacer
  *  ****.****************** .*

91. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to KX349302 (Cyanophage S-RIM14 isolate RW_03_0110, complete genome) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
tagctgcttctaaagaattgaaattgattga	Protospacer
  *  ****.****************** .*

92. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP023176 (Lactobacillus plantarum strain BDGP2 plasmid pLtBDGP2B, complete sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
cttaattttttaaataattgaaattgatcaa	Protospacer
 . ** .******* ************* **

93. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP028335 (Lactobacillus plantarum strain SRCM101167 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
cttaattttttaaataattgaaattgatcaa	Protospacer
 . ** .******* ************* **

94. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP013754 (Lactobacillus plantarum strain DF plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
cttaattttttaaataattgaaattgatcaa	Protospacer
 . ** .******* ************* **

95. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP032745 (Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
cttaattttttaaataattgaaattgatcaa	Protospacer
 . ** .******* ************* **

96. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP023491 (Lactobacillus plantarum strain NCIMB 700965 plasmid unamed1, complete sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
cttaattttttaaataattgaaattgatcaa	Protospacer
 . ** .******* ************* **

97. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP046263 (Lactobacillus plantarum strain KCCP11226 plasmid pKCCP11226_01, complete sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
cttaattttttaaataattgaaattgatcaa	Protospacer
 . ** .******* ************* **

98. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP013750 (Lactobacillus plantarum strain KP plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
cttaattttttaaataattgaaattgatcaa	Protospacer
 . ** .******* ************* **

99. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP017956 (Lactobacillus plantarum strain C410L1 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
cttaattttttaaataattgaaattgatcaa	Protospacer
 . ** .******* ************* **

100. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP026506 (Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed1, complete sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
cttaattttttaaataattgaaattgatcaa	Protospacer
 . ** .******* ************* **

101. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NC_021527 (Lactobacillus plantarum 16 plasmid Lp16G, complete sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
cttaattttttaaataattgaaattgatcaa	Protospacer
 . ** .******* ************* **

102. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP040376 (Lactobacillus plantarum subsp. plantarum strain BNH17 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
cttaattttttaaataattgaaattgatcaa	Protospacer
 . ** .******* ************* **

103. spacer 1.58|541203|30|NC_011025|CRISPRCasFinder,CRT matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

tttcacacttcttgtattgcaggtgattta	CRISPR spacer
ctcaccacttctggtattgcatgtgatttt	Protospacer
.*.  ******* ******** *******

104. spacer 1.65|541667|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP053834 (Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence) position: , mismatch: 7, identity: 0.774

atttaggattgtatttttgaactgtccctaa---	CRISPR spacer
ctatagtattgtttttttgaactgtc---aaatt	Protospacer
 * *** ***** *************   **

105. spacer 1.1|539548|31|NC_011025|PILER-CR matches to NZ_CP045340 (Vibrio sp. THAF190c plasmid pTHAF190c_b, complete sequence) position: , mismatch: 8, identity: 0.742

tatttaatagaacaattaaacctgattatat	CRISPR spacer
atttcgatagaacaattaagccagattattg	Protospacer
  **..*************.** ******

106. spacer 1.2|539614|31|NC_011025|PILER-CR matches to NZ_CP023302 (Lactobacillus plantarum strain pc-26 plasmid p.pc-2601, complete sequence) position: , mismatch: 8, identity: 0.742

taaatttgttatctaataattcagcgatatt	CRISPR spacer
cgcaatggttttctaataattcaccgatata	Protospacer
.. * * *** ************ ******

107. spacer 1.7|539945|31|NC_011025|PILER-CR matches to NZ_CP035412 (Bacillus subtilis strain SRCM103622 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

ttattttcagttcaaatttgcttaatacctt	CRISPR spacer
acaaagccagtttaaatttgcttaatatctt	Protospacer
 .*   .*****.**************.***

108. spacer 1.7|539945|31|NC_011025|PILER-CR matches to NC_015149 (Bacillus subtilis subsp. natto plasmid pLS32 DNA, complete sequence, strain: IAM 11631) position: , mismatch: 8, identity: 0.742

ttattttcagttcaaatttgcttaatacctt	CRISPR spacer
acaaagccagtttaaatttgcttaatatctt	Protospacer
 .*   .*****.**************.***

109. spacer 1.15|540475|31|NC_011025|PILER-CR matches to NZ_CP017776 (Bacillus velezensis strain 9912D plasmid p9912D, complete sequence) position: , mismatch: 8, identity: 0.742

ttaatgataataacgattatgat-ctagttgt	CRISPR spacer
ttaatcataataacgatcatgataacaatca-	Protospacer
***** ***********.*****  .*.*..

110. spacer 1.15|540475|31|NC_011025|PILER-CR matches to NC_015845 (Enterococcus hirae ATCC 9790 plasmid pTG9790, complete sequence) position: , mismatch: 8, identity: 0.742

ttaatgataataacgattatgatctagttgt	CRISPR spacer
ttaataataattacgattatgatgtcaaaat	Protospacer
*****.***** *********** * .  .*

111. spacer 1.15|540475|31|NC_011025|PILER-CR matches to NZ_CP030098 (Bacillus amyloliquefaciens strain SH-B74 plasmid pSH-B74, complete sequence) position: , mismatch: 8, identity: 0.742

ttaatgataataacgattatgat-ctagttgt	CRISPR spacer
ttaatcataataacgatcatgataacaatca-	Protospacer
***** ***********.*****  .*.*..

112. spacer 1.15|540475|31|NC_011025|PILER-CR matches to NZ_CP030098 (Bacillus amyloliquefaciens strain SH-B74 plasmid pSH-B74, complete sequence) position: , mismatch: 8, identity: 0.742

ttaatgataataacgattatgat-ctagttgt	CRISPR spacer
ttaatcataataacgatcatgataacaatca-	Protospacer
***** ***********.*****  .*.*..

113. spacer 1.17|540607|31|NC_011025|PILER-CR matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 8, identity: 0.742

tccagccagcattactttttagtcaatcagt	CRISPR spacer
atcagccagcatgactttttcgtcatcctga	Protospacer
 .********** ******* **** .* *

114. spacer 1.19|540739|31|NC_011025|PILER-CR matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 8, identity: 0.742

tccagccagcattactttttagtcaatcagt	CRISPR spacer
atcagccagcatgactttttcgtcatcctga	Protospacer
 .********** ******* **** .* *

115. spacer 1.22|540937|31|NC_011025|PILER-CR matches to NC_019358 (Clostridium perfringens plasmid pCP8533S12 DNA, complete sequence) position: , mismatch: 8, identity: 0.742

tggtcactataaataacttcaataaaatttt	CRISPR spacer
tagagcctataattaacttcattaaaattga	Protospacer
*.*   ****** ******** *******

116. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP004876 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
taaactaattttatacaattgaaattgataaa	Protospacer
** .  . ***** * ****************

117. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NC_017203 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
taaactaattttatacaattgaaattgataaa	Protospacer
** .  . ***** * ****************

118. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NC_020384 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
taaactaattttatacaattgaaattgataaa	Protospacer
** .  . ***** * ****************

119. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP013754 (Lactobacillus plantarum strain DF plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ccttaattttttaaataattgaaattgatcaa	Protospacer
. . ** .******* ************* **

120. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP032745 (Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ccttaattttttaaataattgaaattgatcaa	Protospacer
. . ** .******* ************* **

121. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
taaactaattttatacaattgaaattgataaa	Protospacer
** .  . ***** * ****************

122. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP015177 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
taaactaattttatacaattgaaattgataaa	Protospacer
** .  . ***** * ****************

123. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP023491 (Lactobacillus plantarum strain NCIMB 700965 plasmid unamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ccttaattttttaaataattgaaattgatcaa	Protospacer
. . ** .******* ************* **

124. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP046263 (Lactobacillus plantarum strain KCCP11226 plasmid pKCCP11226_01, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ccttaattttttaaataattgaaattgatcaa	Protospacer
. . ** .******* ************* **

125. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP013750 (Lactobacillus plantarum strain KP plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ccttaattttttaaataattgaaattgatcaa	Protospacer
. . ** .******* ************* **

126. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP004861 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
taaactaattttatacaattgaaattgataaa	Protospacer
** .  . ***** * ****************

127. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP017956 (Lactobacillus plantarum strain C410L1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ccttaattttttaaataattgaaattgatcaa	Protospacer
. . ** .******* ************* **

128. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP023176 (Lactobacillus plantarum strain BDGP2 plasmid pLtBDGP2B, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ccttaattttttaaataattgaaattgatcaa	Protospacer
. . ** .******* ************* **

129. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP026506 (Lactobacillus plantarum strain NCIMB700965.EF.A plasmid punamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ccttaattttttaaataattgaaattgatcaa	Protospacer
. . ** .******* ************* **

130. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NC_021527 (Lactobacillus plantarum 16 plasmid Lp16G, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ccttaattttttaaataattgaaattgatcaa	Protospacer
. . ** .******* ************* **

131. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP010091 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
taaactaattttatacaattgaaattgataaa	Protospacer
** .  . ***** * ****************

132. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP040376 (Lactobacillus plantarum subsp. plantarum strain BNH17 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ccttaattttttaaataattgaaattgatcaa	Protospacer
. . ** .******* ************* **

133. spacer 1.23|541003|32|NC_011025|PILER-CR matches to NZ_CP028335 (Lactobacillus plantarum strain SRCM101167 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
ccttaattttttaaataattgaaattgatcaa	Protospacer
. . ** .******* ************* **

134. spacer 1.26|541202|31|NC_011025|PILER-CR matches to CP013001 (Bacillus thuringiensis strain XL6 plasmid, complete sequence) position: , mismatch: 8, identity: 0.742

ttttcacacttcttgtattgcaggtgattta	CRISPR spacer
actcaccacttctggtattgcatgtgatttt	Protospacer
 .*.  ******* ******** *******

135. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MN966730 (Vibrio phage Cilsick, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

136. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MT460516 (Vibrio phage Quinn, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

137. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MG649967 (Vibrio virus Thalassa, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

138. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MT460515 (Vibrio phage Cody, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

139. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MT448616 (Vibrio phage BBMuffin, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

140. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MT460514 (Vibrio phage AG74, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

141. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MK796244 (Vibrio phage Achelous, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

142. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MT460518 (Vibrio phage Direpillow8, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

143. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MN966731 (Vibrio phage Chazly21, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

144. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MK907780 (Vibrio phage Pontus, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

145. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MK895508 (Vibrio phage Brizo, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

146. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to NC_042095 (Vibrio phage Thalassa, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

147. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MN958086 (Vibrio phage Bennett, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

148. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MT460517 (Vibrio phage Athena, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

149. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MT448617 (Vibrio phage River4, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

150. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MT459144 (Vibrio phage Dax, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

151. spacer 1.41|540079|30|NC_011025|CRISPRCasFinder,CRT matches to MN966732 (Vibrio phage Chester, complete genome) position: , mismatch: 8, identity: 0.733

aattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
cgtccacagatgctaaccgtaaaaaattct	Protospacer
 .*.** ***** **************

152. spacer 1.43|540211|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 8, identity: 0.742

tcttaacctttcagttaattctgcaatttta	CRISPR spacer
attaattttttcagttaattcaacaatttta	Protospacer
 .* * ..************* .********

153. spacer 1.43|540211|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP014203 (Clostridium baratii strain CDC51267 plasmid pNPD11_1, complete sequence) position: , mismatch: 8, identity: 0.742

tcttaacctttcagttaattctgcaatttta	CRISPR spacer
cctatctttttcagttaattcttcaatctta	Protospacer
.**   ..************** ****.***

154. spacer 1.54|540938|30|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 8, identity: 0.733

ggtcactataaataacttcaataaaatttt	CRISPR spacer
aacaactgtaaataactgcaataaaattgg	Protospacer
... ***.********* **********

155. spacer 1.54|540938|30|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 8, identity: 0.733

ggtcactataaataacttcaataaaatttt	CRISPR spacer
aacaactgtaaataactgcaataaaattgg	Protospacer
... ***.********* **********

156. spacer 1.54|540938|30|NC_011025|CRISPRCasFinder,CRT matches to NC_019358 (Clostridium perfringens plasmid pCP8533S12 DNA, complete sequence) position: , mismatch: 8, identity: 0.733

ggtcactataaataacttcaataaaatttt	CRISPR spacer
agagcctataattaacttcattaaaattga	Protospacer
.*   ****** ******** *******

157. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP004876 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB299, complete sequence) position: , mismatch: 8, identity: 0.742

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
aaactaattttatacaattgaaattgataaa	Protospacer
* .  . ***** * ****************

158. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NC_017203 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence) position: , mismatch: 8, identity: 0.742

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
aaactaattttatacaattgaaattgataaa	Protospacer
* .  . ***** * ****************

159. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NC_020384 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence) position: , mismatch: 8, identity: 0.742

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
aaactaattttatacaattgaaattgataaa	Protospacer
* .  . ***** * ****************

160. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP015177 (Bacillus thuringiensis serovar alesti strain BGSC 4C1 plasmid pBMB267, complete sequence) position: , mismatch: 8, identity: 0.742

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
aaactaattttatacaattgaaattgataaa	Protospacer
* .  . ***** * ****************

161. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP004861 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence) position: , mismatch: 8, identity: 0.742

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
aaactaattttatacaattgaaattgataaa	Protospacer
* .  . ***** * ****************

162. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP010091 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence) position: , mismatch: 8, identity: 0.742

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
aaactaattttatacaattgaaattgataaa	Protospacer
* .  . ***** * ****************

163. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 8, identity: 0.742

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
aaactaattttatacaattgaaattgataaa	Protospacer
* .  . ***** * ****************

164. spacer 1.59|541269|30|NC_011025|CRISPRCasFinder,CRT matches to NC_025137 (Acinetobacter pittii strain MS32 plasmid pMS32-3, complete sequence) position: , mismatch: 8, identity: 0.733

aaaaccaggccactatatttttataaaaat	CRISPR spacer
gtcgcttcgccactaaatttttataaaaat	Protospacer
.  .*.  ******* **************

165. spacer 1.59|541269|30|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP026422 (Acinetobacter sp. ACNIH1 plasmid pACI-a283, complete sequence) position: , mismatch: 8, identity: 0.733

aaaaccaggccactatatttttataaaaat	CRISPR spacer
gtggcttcgccactaaatttttataaaaat	Protospacer
. ..*.  ******* **************

166. spacer 1.61|541401|32|NC_011025|CRISPRCasFinder,CRT matches to MN013189 (Microcystis phage Mic1, complete genome) position: , mismatch: 8, identity: 0.75

tcttaattcttttaaactgtctgctttgttga	CRISPR spacer
tcttaattctttaaagctgtctgcggcatttt	Protospacer
************ **.********  ..**

167. spacer 1.63|541535|30|NC_011025|CRISPRCasFinder,CRT matches to MN855828 (Bacteriophage sp. isolate 175, complete genome) position: , mismatch: 8, identity: 0.733

ttttgccacaaaactacaggagcttttgtt	CRISPR spacer
aaacgtgataaaactacaggagcatttgtt	Protospacer
   .*. *.************** ******

168. spacer 1.65|541667|31|NC_011025|CRISPRCasFinder,CRT matches to NC_019924 (Clostridium phage phi8074-B1, complete genome) position: , mismatch: 8, identity: 0.742

atttaggattgtatttttgaactgtccctaa	CRISPR spacer
tccaaccactgtatttttgaactgtccataa	Protospacer
 .. *  *.****************** ***

169. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MN966730 (Vibrio phage Cilsick, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

170. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MT460516 (Vibrio phage Quinn, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

171. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MG649967 (Vibrio virus Thalassa, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

172. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MT460515 (Vibrio phage Cody, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

173. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MT448616 (Vibrio phage BBMuffin, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

174. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MT460514 (Vibrio phage AG74, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

175. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MK796244 (Vibrio phage Achelous, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

176. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MT460518 (Vibrio phage Direpillow8, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

177. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MN966731 (Vibrio phage Chazly21, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

178. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MK907780 (Vibrio phage Pontus, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

179. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MK895508 (Vibrio phage Brizo, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

180. spacer 1.9|540078|31|NC_011025|PILER-CR matches to NC_042095 (Vibrio phage Thalassa, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

181. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MN958086 (Vibrio phage Bennett, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

182. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MT460517 (Vibrio phage Athena, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

183. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MT448617 (Vibrio phage River4, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

184. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MT459144 (Vibrio phage Dax, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

185. spacer 1.9|540078|31|NC_011025|PILER-CR matches to MN966732 (Vibrio phage Chester, complete genome) position: , mismatch: 9, identity: 0.71

taattcaaagatgataaccgtaaaaaatgag	CRISPR spacer
acgtccacagatgctaaccgtaaaaaattct	Protospacer
  .*.** ***** **************

186. spacer 1.11|540210|32|NC_011025|PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 9, identity: 0.719

ttcttaacctttcagttaattctgcaatttta	CRISPR spacer
cattaattttttcagttaattcaacaatttta	Protospacer
. .* * ..************* .********

187. spacer 1.11|540210|32|NC_011025|PILER-CR matches to NZ_CP014203 (Clostridium baratii strain CDC51267 plasmid pNPD11_1, complete sequence) position: , mismatch: 9, identity: 0.719

ttcttaacctttcagttaattctgcaatttta	CRISPR spacer
gcctatctttttcagttaattcttcaatctta	Protospacer
 .**   ..************** ****.***

188. spacer 1.22|540937|31|NC_011025|PILER-CR matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 9, identity: 0.71

tggtcactataaataacttcaataaaatttt	CRISPR spacer
caacaactgtaaataactgcaataaaattgg	Protospacer
.... ***.********* **********

189. spacer 1.22|540937|31|NC_011025|PILER-CR matches to NZ_CP024793 (Nostoc flagelliforme CCNUN1 plasmid pNFSY08, complete sequence) position: , mismatch: 9, identity: 0.71

tggtcactataaataacttcaataaaatttt	CRISPR spacer
caacaactgtaaataactgcaataaaattgg	Protospacer
.... ***.********* **********

190. spacer 1.27|541268|31|NC_011025|PILER-CR matches to NC_025137 (Acinetobacter pittii strain MS32 plasmid pMS32-3, complete sequence) position: , mismatch: 9, identity: 0.71

caaaaccaggccactatatttttataaaaat	CRISPR spacer
agtcgcttcgccactaaatttttataaaaat	Protospacer
 .  .*.  ******* **************

191. spacer 1.27|541268|31|NC_011025|PILER-CR matches to NZ_CP026422 (Acinetobacter sp. ACNIH1 plasmid pACI-a283, complete sequence) position: , mismatch: 9, identity: 0.71

caaaaccaggccactatatttttataaaaat	CRISPR spacer
agtggcttcgccactaaatttttataaaaat	Protospacer
 . ..*.  ******* **************

192. spacer 1.29|541400|33|NC_011025|PILER-CR matches to MN013189 (Microcystis phage Mic1, complete genome) position: , mismatch: 9, identity: 0.727

ctcttaattcttttaaactgtctgctttgttga	CRISPR spacer
ttcttaattctttaaagctgtctgcggcatttt	Protospacer
.************ **.********  ..**

193. spacer 1.43|540211|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 9, identity: 0.71

tcttaacctttcagttaattctgcaatttta	CRISPR spacer
aacaaggctttcagttaattaagcaattttt	Protospacer
  . *. *************  ********

194. spacer 1.43|540211|31|NC_011025|CRISPRCasFinder,CRT matches to MN855768 (Siphoviridae sp. isolate 183, complete genome) position: , mismatch: 9, identity: 0.71

tcttaacctttcagttaattctgcaatttta	CRISPR spacer
ccttatcctttcggttaattctgcgacccat	Protospacer
.**** ******.***********.*...

195. spacer 1.47|540476|30|NC_011025|CRISPRCasFinder,CRT matches to LR026976 (Bacillus pumilus isolate 1 genome assembly, plasmid: p576) position: , mismatch: 9, identity: 0.7

taatgataataacgattatgatctagttgt	CRISPR spacer
taatgataataacgatgatgaatacaaaat	Protospacer
**************** **** .  .  .*

196. spacer 1.55|541004|31|NC_011025|CRISPRCasFinder,CRT matches to JQ062992 (Bacillus phage phIS3501, complete genome) position: , mismatch: 9, identity: 0.71

acgaagcttttaaagaattgaaattgataaa	CRISPR spacer
agaggagttttaaagaatttaaattgacaat	Protospacer
* .... ************ *******.**

197. spacer 1.61|541401|32|NC_011025|CRISPRCasFinder,CRT matches to MN693352 (Marine virus AFVG_25M558, complete genome) position: , mismatch: 9, identity: 0.719

tcttaattcttttaaactgtctgctttgttga--	CRISPR spacer
tcttaattcttttaaattatctg--gcactaaat	Protospacer
****************.*.****   ...*.*

198. spacer 1.65|541667|31|NC_011025|CRISPRCasFinder,CRT matches to NZ_CP040853 (Lactobacillus murinus strain V10 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

atttaggattgtatttttgaactgtccctaa	CRISPR spacer
atttacgattgtctttttgaactaatcggtg	Protospacer
***** ****** **********. .*   .

199. spacer 1.11|540210|32|NC_011025|PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 10, identity: 0.688

ttcttaacctttcagttaattctgcaatttta	CRISPR spacer
aaacaaggctttcagttaattaagcaattttt	Protospacer
   . *. *************  ********

200. spacer 1.11|540210|32|NC_011025|PILER-CR matches to MN855768 (Siphoviridae sp. isolate 183, complete genome) position: , mismatch: 10, identity: 0.688

ttcttaacctttcagttaattctgcaatttta	CRISPR spacer
gccttatcctttcggttaattctgcgacccat	Protospacer
 .**** ******.***********.*...

201. spacer 1.23|541003|32|NC_011025|PILER-CR matches to JQ062992 (Bacillus phage phIS3501, complete genome) position: , mismatch: 10, identity: 0.688

tacgaagcttttaaagaattgaaattgataaa	CRISPR spacer
aagaggagttttaaagaatttaaattgacaat	Protospacer
 * .... ************ *******.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

565527 : 574691

Mycoplasma_phage(83.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012498367.1\|565527_568035_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	6.5e-139	38.1
WP_012498368.1\|568166_569783_-	spermidine/putrescine ABC transporter substrate-binding protein	Q6GZ00	Mycoplasma_phage	4.9e-47	31.2
WP_012498369.1\|569789_570653_-	ABC transporter permease	Q6GZ01	Mycoplasma_phage	1.5e-66	47.9
WP_012498370.1\|570645_571509_-	ABC transporter permease	Q6GZ02	Mycoplasma_phage	7.1e-61	48.5
WP_041914181.1\|571495_572878_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.1e-58	58.5
WP_012498372.1\|573089_574691_-	spermidine/putrescine ABC transporter substrate-binding protein	Q6GZ00	Mycoplasma_phage	5.9e-37	27.8

DBSCAN-SWA_2

706928 : 724163

Mycoplasma_phage(94.12%)

integrase

attL 699784:699802|attR 724140:724158

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
699784:699802	attL	NA	NA	NA	NA
WP_012498463.1\|706928_707759_+	AAA family ATPase	O80239	Mycoplasma_phage	3.8e-144	100.0
WP_012498464.1\|707929_708223_+	hypothetical protein	O80240	Mycoplasma_phage	2.7e-49	99.0
WP_012498465.1\|708225_708714_+	hypothetical protein	O80241	Mycoplasma_phage	2.8e-91	100.0
WP_012498466.1\|708706_709486_+	DNA methyltransferase	O80242	Mycoplasma_phage	2.4e-148	100.0
WP_012498467.1\|709478_711119_+	hypothetical protein	O80243	Mycoplasma_phage	0.0e+00	100.0
WP_012498468.1\|711120_712347_+	hypothetical protein	O80244	Mycoplasma_phage	5.5e-208	97.9
WP_041914116.1\|712349_712544_+	hypothetical protein	O80245	Mycoplasma_phage	4.3e-27	100.0
WP_012498469.1\|712543_714649_+	hypothetical protein	O80245	Mycoplasma_phage	0.0e+00	100.0
WP_012498470.1\|714713_715214_+	hypothetical protein	O80246	Mycoplasma_phage	5.9e-84	100.0
WP_012498471.1\|715232_716156_+	hypothetical protein	O80247	Mycoplasma_phage	6.4e-169	100.0
WP_012498472.1\|716158_717472_+	hypothetical protein	O80248	Mycoplasma_phage	8.4e-247	100.0
WP_012498473.1\|717485_719039_+	hypothetical protein	O80249	Mycoplasma_phage	2.0e-276	99.8
WP_012498474.1\|719053_719329_+	hypothetical protein	O80250	Mycoplasma_phage	3.1e-18	100.0
WP_015979767.1\|719487_720132_-	virulence determinant Vir	O80251	Mycoplasma_phage	1.8e-122	100.0
WP_012498476.1\|720390_721428_+\|integrase	site-specific integrase	O80252	Mycoplasma_phage	1.0e-191	99.4
WP_012498477.1\|721444_721810_+	excisionase	O80253	Mycoplasma_phage	4.6e-62	100.0
WP_012498478.1\|722366_724163_+	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.3e-120	43.3
724140:724158	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_011025.1|WP_041914116.1|712349_712544_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_011025.1|WP_041914116.1|712349_712544_+|hypothetical-protein

712349_712544_+

64 aa aa

706928-724163

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_011025_1	TypeII	1.14\|540409\|31\|NC_011025\|PILER-CR	540409-540439	31	720690-720660	1
NC_011025_1	TypeII	1.21\|540871\|31\|NC_011025\|PILER-CR	540871-540901	31	709886-709856	2
NC_011025_1	TypeII	1.46\|540410\|30\|NC_011025\|CRISPRCasFinder,CRT	540410-540439	30	720689-720660	1
NC_011025_1	TypeII	1.53\|540872\|30\|NC_011025\|CRISPRCasFinder,CRT	540872-540901	30	709885-709856	2
NC_011025_1	TypeII	1.58\|541203\|30\|NC_011025\|CRISPRCasFinder,CRT	541203-541232	30	711323-711294	0

1. spacer 1.14|540409|31|NC_011025|PILER-CR matches to NC_011025 position: 720690-720660, mismatch: 1

ttcattttgattatatacttgcttcggcata	CRISPR spacer
ttcattttgattatacacttgcttcggcata	Protospacer
***************.***************

2. spacer 1.21|540871|31|NC_011025|PILER-CR matches to NC_011025 position: 709886-709856, mismatch: 2

ttcgaagttttcaaaataaatcgctctgcca	CRISPR spacer
ttcgaagttttcgaaaaaaatcgctctgcca	Protospacer
************.*** **************

3. spacer 1.46|540410|30|NC_011025|CRISPRCasFinder,CRT matches to NC_011025 position: 720689-720660, mismatch: 1

tcattttgattatatacttgcttcggcata	CRISPR spacer
tcattttgattatacacttgcttcggcata	Protospacer
**************.***************

4. spacer 1.53|540872|30|NC_011025|CRISPRCasFinder,CRT matches to NC_011025 position: 709885-709856, mismatch: 2

tcgaagttttcaaaataaatcgctctgcca	CRISPR spacer
tcgaagttttcgaaaaaaatcgctctgcca	Protospacer
***********.*** **************

5. spacer 1.58|541203|30|NC_011025|CRISPRCasFinder,CRT matches to NC_011025 position: 711323-711294, mismatch: 0

tttcacacttcttgtattgcaggtgattta	CRISPR spacer
tttcacacttcttgtattgcaggtgattta	Protospacer
******************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011025

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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