CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010644	Elusimicrobium minutum Pei191, complete sequence	3 crisprs	cas3,cas9,cas1,cas2,cas4,csa3,WYL,DEDDh	2	5	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010644_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010644_1

266140-267032

TypeII

Consensus_repeat	Method
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	CRISPRCasFinder
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	CRT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	PILER-CR

13 spacers

cas2,cas1,cas9

The CRISPR arrays of NC_010644_1

>merge|NC_010644|1|266140-267032|CRISPRCasFinder,CRT,PILER-CR
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACCCTTTATTTCGGAGTACGGTGACACTATAATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACATATTGTCCGCGGCAAAGGCAACCCGGAAAATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACTCTGCTGCTCCTTATACATATCCAAATATTATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACGCAAAAGTGTAATGGTCGCCGGAATTAACCATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACACAATTACAGTATAACATTGACAGAACAACATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACCTCTTATAGCATATATCCCCAACACCACTCATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACAGGAACGAATCCAAAAACAGAACCAGGACTATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACCTTAACGCCGGGCATATATTGTATTTCGTTATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACATTAGTTACTGCATACACAACAGAAGATTTATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACATGTAATCTTCCCTATATCGTCGCTTCAAAATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACTCAAGGCTTAGAGGTATGGGAACTGGTTTTATTCTATAAATTCAATTCTCGGAGGGCAACCCTAACAGGGTATTGCTGTCTAAAGAGAGTGAAGACATTCTATAAAATCAATTCTCGGAGGGCAACCCTAACGAGTCAATAACTTGATATTGTACTCACAACATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC

>NC_010644|1|1|266140-267032|CRISPRCasFinder
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	CCTTTATTTCGGAGTACGGTGACACTATA
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ATATTGTCCGCGGCAAAGGCAACCCGGAAA
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	TCTGCTGCTCCTTATACATATCCAAATATT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	GCAAAAGTGTAATGGTCGCCGGAATTAACC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ACAATTACAGTATAACATTGACAGAACAAC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	CTCTTATAGCATATATCCCCAACACCACTC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	AGGAACGAATCCAAAAACAGAACCAGGACT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	CTTAACGCCGGGCATATATTGTATTTCGTT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ATTAGTTACTGCATACACAACAGAAGATTT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ATGTAATCTTCCCTATATCGTCGCTTCAAA
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	TCAAGGCTTAGAGGTATGGGAACTGGTTTT
ATTCTATAAATTCAATTCTCGGAGGGCAACCCTAAC	AGGGTATTGCTGTCTAAAGAGAGTGAAGAC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	GAGTCAATAACTTGATATTGTACTCACAAC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC

>NC_010644|1|1|266140-267032|CRT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	CCTTTATTTCGGAGTACGGTGACACTATA
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ATATTGTCCGCGGCAAAGGCAACCCGGAAA
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	TCTGCTGCTCCTTATACATATCCAAATATT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	GCAAAAGTGTAATGGTCGCCGGAATTAACC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ACAATTACAGTATAACATTGACAGAACAAC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	CTCTTATAGCATATATCCCCAACACCACTC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	AGGAACGAATCCAAAAACAGAACCAGGACT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	CTTAACGCCGGGCATATATTGTATTTCGTT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ATTAGTTACTGCATACACAACAGAAGATTT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ATGTAATCTTCCCTATATCGTCGCTTCAAA
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	TCAAGGCTTAGAGGTATGGGAACTGGTTTT
ATTCTATAAATTCAATTCTCGGAGGGCAACCCTAAC	AGGGTATTGCTGTCTAAAGAGAGTGAAGAC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	GAGTCAATAACTTGATATTGTACTCACAAC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC

>NC_010644|1|1|266205-267032|PILER-CR
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ATATTGTCCGCGGCAAAGGCAACCCGGAAA
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	TCTGCTGCTCCTTATACATATCCAAATATT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	GCAAAAGTGTAATGGTCGCCGGAATTAACC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ACAATTACAGTATAACATTGACAGAACAAC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	CTCTTATAGCATATATCCCCAACACCACTC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	AGGAACGAATCCAAAAACAGAACCAGGACT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	CTTAACGCCGGGCATATATTGTATTTCGTT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ATTAGTTACTGCATACACAACAGAAGATTT
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	ATGTAATCTTCCCTATATCGTCGCTTCAAA
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	TCAAGGCTTAGAGGTATGGGAACTGGTTTT
ATTCTATAAATTCAATTCTCGGAGGGCAACCCTAAC	AGGGTATTGCTGTCTAAAGAGAGTGAAGAC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC	GAGTCAATAACTTGATATTGTACTCACAAC
ATTCTATAAAATCAATTCTCGGAGGGCAACCCTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010644.1\|WP_012414427.1\|268768_269476_+\|DNA-alkylation-repair-protein	unknown	unknown	gnl\|CDD\|378033
NC_010644.1\|WP_012414431.1\|273686_274817_+\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414429.1\|270395_270662_-\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414422.1\|265601_265928_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_010644.1\|WP_012414426.1\|268193_268712_-\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|378961
NC_010644.1\|WP_012414414.1\|255970_256804_+\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414417.1\|258712_259450_-\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414428.1\|269477_270395_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NC_010644.1\|WP_012414415.1\|256878_257754_+\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414418.1\|259895_260525_-\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414413.1\|255179_255962_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|377700
NC_010644.1\|WP_012414423.1\|267139_267313_+\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414419.1\|260642_260822_+\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414421.1\|264708_265605_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_010644.1\|WP_012414425.1\|267624_268212_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_010644.1\|WP_012414433.1\|275501_276794_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl\|CDD\|223694
NC_010644.1\|WP_012414432.1\|275107_275410_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372498
NC_010644.1\|WP_012414430.1\|270726_273441_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NC_010644.1\|WP_012414420.1\|261118_264706_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NC_010644.1\|WP_012414416.1\|257891_258155_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010644.1\|WP_012414427.1\|268768_269476_+\|DNA-alkylation-repair-protein	gnl\|CDD\|378033	pfam08713, DNA_alkylation, DNA alkylation repair enzyme. Proteins in this family are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein in this family shows it to adopt a supercoiled alpha helical structure.	7.25922e-62
NC_010644.1\|WP_012414421.1\|264708_265605_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.45889e-80
NC_010644.1\|WP_012414425.1\|267624_268212_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.19604e-19
NC_010644.1\|WP_012414433.1\|275501_276794_+\|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	8.13759e-147
NC_010644.1\|WP_012414422.1\|265601_265928_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.07276e-15
NC_010644.1\|WP_012414426.1\|268193_268712_-\|ECF-transporter-S-component	gnl\|CDD\|378961	pfam12822, ECF_trnsprt, ECF transporter, substrate-specific component. Energy-coupling factor (ECF) transporters consist of a substrate-specific component (known as the S component), and an energy-coupling module. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module.	0.000775908
NC_010644.1\|WP_012414430.1\|270726_273441_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NC_010644.1\|WP_012414420.1\|261118_264706_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	8.60792e-59
NC_010644.1\|WP_012414428.1\|269477_270395_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.43378e-16
NC_010644.1\|WP_012414432.1\|275107_275410_+\|hypothetical-protein	gnl\|CDD\|372498	pfam13146, TRL, TRL-like protein family. This family includes the TRL protein that is found in a locus that includes several tRNAs. The function of this protein is not known. The proteins in this family usually have a lipoprotein attachment site at their N-terminus.	3.06732e-23
NC_010644.1\|WP_012414413.1\|255179_255962_+\|prepilin-peptidase	gnl\|CDD\|377700	pfam06750, DiS_P_DiS, Bacterial Peptidase A24 N-terminal domain. This family is found at the N-terminus of the pre-pilin peptidases (pfam01478). It's function has not been specifically determined; however some of the family have been characterized as bifunctional, and this domain may contain the N-methylation activity (EC:2.1.1.-). It consists of an intracellular region between a pair of transmembrane. This region contains an invariant proline and two almost fully conserved disulphide bridges - hence the name DiS-P-DiS. The cysteines have been shown to be essential to the overall function of the enzyme in, but their role was incorrectly ascribed.	6.12649e-44

>NC_010644.1|WP_012414422.1|265601_265928_+|CRISPR-associated-endonuclease-Cas2
MISPYKTMWILIAFDLPVKTKTQMRIANKFRQTLKNSGFIMLQKSIYSYYAFSKERCDIIEKQIKQIVPDNGHICFLFFTDRMFKMTKHFYGRLKVQAERPDFFDTLL
>NC_010644.1|WP_012414421.1|264708_265605_+|type-II-CRISPR-associated-endonuclease-Cas1
MWRVLDIPGDGYHLCVKNNNFSAVKDREEKLHCLFDDINSIILYGNNITISNTCIQKCLEHKVPVIFCDKTYNPAGMLLSSFTTNIYGRRLQLQINASKPQIKQAWQQIITSKLNNQAEVLKRFDTLKAAETIFNMAREVRSGDATFKEGVGAKVYFENLFNDFHRNTDDKDIINSALNYGYAIVRSSIARAVVSAGLNPAIGIFHSKNHNPFCLIDDLIEPLRPLIDFMVKNKLDVLTQEESLSPSAKKYMASVIESNLYFEDGAFNLTAGIQKYIQSYIAFLEERENRIIFPAILK
>NC_010644.1|WP_012414420.1|261118_264706_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MQKNINTKQNHIYIKQAQKIKEKLGDKPYRIGLDLGVGSIGFAIVSMEENDGNVLLPKEIIMVGSRIFKASAGAADRKLSRGQRNNHRHTRERMRYLWKVLAEQKLALPVPADLDRKENSSEGETSAKRFLGDVLQKDIYELRVKSLDERLSLQELGYVLYHIAGHRGSSAIRTFENDSEEAQKENTENKKIAGNIKRLMAKKNYRTYGEYLYKEFFENKEKHKREKISNAANNHKFSPTRDLVIKEAEAILKKQAGKDGFHKELTEEYIEKLTKAIGYESEKLIPESGFCPYLKDEKRLPASHKLNEERRLWETLNNARYSDPIVDIVTGEITGYYEKQFTKEQKQKLFDYLLTGSELTPAQTKKLLGLKNTNFEDIILQGRDKKAQKIKGYKLIKLESMPFWARLSEAQQDSFLYDWNSCPDEKLLTEKLSNEYHLTEEEIDNAFNEIVLSSSYAPLGKSAMLIILEKIKNDLSYTEAVEEALKEGKLTKEKQAIKDRLPYYGAVLQESTQKIIAKGFSPQFKDKGYKTPHTNKYELEYGRIANPVVHQTLNELRKLVNEIIDILGKKPCEIGLETARELKKSAEDRSKLSREQNDNESNRNRIYEIYIRPQQQVIITRRENPRNYILKFELLEEQKSQCPFCGGQISPNDIINNQADIEHLFPIAESEDNGRNNLVISHSACNADKAKRSPWAAFASAAKDSKYDYNRILSNVKENIPHKAWRFNQGAFEKFIENKPMAARFKTDNSYISKVAHKYLACLFEKPNIICVKGSLTAQLRMAWGLQGLMIPFAKQLITEKESESFNKDVNSNKKIRLDNRHHALDAIVIAYASRGYGNLLNKMAGKDYKINYSERNWLSKILLPPNNIVWENIDADLESFESSVKTALKNAFISVKHDHSDNGELVKGTMYKIFYSERGYTLTTYKKLSALKLTDPQKKKTPKDFLETALLKFKGRESEMKNEKIKSAIENNKRLFDVIQDNLEKAKKLLEEENEKSKAEGKKEKNINDASIYQKAISLSGDKYVQLSKKEPGKFFAISKPTPTTTGYGYDTGDSLCVDLYYDNKGKLCGEIIRKIDAQQKNPLKYKEQGFTLFERIYGGDILEVDFDIHSDKNSFRNNTGSAPENRVFIKVGTFTEITNNNIQIWFGNIIKSTGGQDDSFTINSMQQYNPRKLILSSCGFIKYRSPILKNKEG
>NC_010644.1|WP_012414419.1|260642_260822_+|hypothetical-protein
MKNFHHVFIFPQMICHDLFFVSSYYIPFIKIVKRQALQEEFDDEITNSKIAPPTKTEPN
>NC_010644.1|WP_012414418.1|259895_260525_-|hypothetical-protein
MKIKKIKPIIKTETNIEFKYKLEGFGCSKAYLKIGDTKVIFPSISYLCFPITDLLEGLLSIIAEWDIISKQGKNTKITNDDSVFIWEDEPGGYAWSLERHRRRNLRIIIKSLYEDESGKEKYNKIVLDKIVNFKAFLAVILTQIDAIVKEYGLLGFRGNWATNTQFPLSQFLELKYYLLYNKILYISKEGKTKNWSLKKELQLLNTEIL
>NC_010644.1|WP_012414417.1|258712_259450_-|hypothetical-protein
MKEFPYKTKTFAVKYKGQAGWQIYDGGISDEKLKKDFISNPDVEKVEMICHGDWNIYQKLTNDFRTFHHLHHIIMYDGWTLDFENGCWRAPDEMPTEFSSKPQQANELKILWKIDEQECKDNKADPVCNDVIVIALTITAGPERIADIAWETKHLFSSMDSFLKNIKDGKDAKAYFEYYSHEELFIWQKNNGKLRFAIRRDNEKDFETLIDIFIDKELFIKAWNSVLSDAYSFMKAHDSHNWIQK
>NC_010644.1|WP_012414416.1|257891_258155_-|hypothetical-protein
MKLFKSIIVFIGLWIIATVGLFFAGFYLFPSQYRCTIGKNGATLCLSVPNPELEIFAKTGWIFLFSFLLAFLLFVIIRMLFKSKKTK
>NC_010644.1|WP_012414415.1|256878_257754_+|hypothetical-protein
MKKTFIFLSAVILLNITLFAQEGGKSGWELELKRISLNLTSTSVQHAQRYGGFADSRLSADGQTLIQGYGNLFAGYYAEMFLWSNNLVAEYGRTEIRPADGSPATKSENVDRITITTDLAYRLWEIEDFLGGFEAGPFANLEYQTEFTTASSGHRKQVGRARGGAKLFKGKYIREFYLAGVLEEDFTITPYSTNFAWETGLRLEHELRDGVKALFDAYFRDYVYRSDERNIDLDYEIGIEARMDVLVYKNLSVAPFINWYAAQATNFGGLGQNLFVGVSFSFSRLFIAAGK
>NC_010644.1|WP_012414414.1|255970_256804_+|hypothetical-protein
MKKIIILIVFICVVTAGYAQNYYSTRYHNKYYYEEDVHPYRLSDPFYIQDLGVIVLDTTGWVGRNIHGDKERRYVANQTLTLGLADWFVLGGGISYKKYDTLRNGKNEKIKGFLNPYALAKIRFLDKLFKIDLLGKVTFDAFDTVAEGGIESGTQKYEGELLAGPKFEKLSIGAKAMYGYWRKGTEIINPDKNYQSNVGGGAIVSVRPLSFFDFGGEAGYIVYDVAETKDEKEFYFSLNANFEIIKGIVLLGAFYDFHNLSKNEDYQNLGIRFKVAI
>NC_010644.1|WP_012414413.1|255179_255962_+|prepilin-peptidase
MDIFIIIIAVLFGLIIGSFLNVCICRIPEGKSVAFPPSHCPKCNVKIKWYDNVPVLSYIILCAKCRHCKEKISWQYPVVELLTGLLTGLFVYRYGITIWTGVVLVVVYSLIISSVIDIKIMIIPDRFSIGLIVWGLAFFWCNPNFSGTTLQMFGQSLLGAAVGFGGLLAVALLGYALFRKEAMGGGDIKLMGGVGALLGWQGVITTLVIACLIGLVYSIFLMVTKRADKGSAIPFGPFLSFGALVNLFYFISPSLFLIRY
>NC_010644.1|WP_012414423.1|267139_267313_+|hypothetical-protein
MILENGSDTPRLQGTFRMLCKTSVTQTMVRSVDIKDASLYAGHASKQVTEDIIYPKK
>NC_010644.1|WP_012414425.1|267624_268212_-|class-I-SAM-dependent-methyltransferase
MDKKQIAAFFDSIACGWDAKERSEVYAKIEQILAKCEITQKAKILDIGCGTGVLFPFLSKYNPGEILSIDLSSKMLEEFKRKHPEANALLADFEDIKLEEDYYDNIIAYNVFPHFVNKEAVFYNAFKFLKHGGIFVVAHSMTREELNSMHGRKKETSKDLLPSSEQMKYFYASAGFKQVIVQEKAPGFFSKGVKI
>NC_010644.1|WP_012414426.1|268193_268712_-|ECF-transporter-S-component
MQNILALRTKTNVLDYKTKKAIILQVLLLASALVLPAVCHHLNLQTKVFLPMHWPVLLAGLVYGWRSGLTLGISAPLASFALSGMPPAHILPIMTLELAVYGFAAGAFRQQLKLNFIFSLLGAMILGKAVYILTAYTLAGSASFAFIQTSLPGIILQAVLLPLIALIWTKNK
>NC_010644.1|WP_012414427.1|268768_269476_+|DNA-alkylation-repair-protein
MSVKNKILNDLKKISDKGKAVHLSRFFKTGKGQYGEGDIFIGVIVPDNRKIAKKYFKEISLAETEELLRSPVHEHRLNALIILRLKFEWEEEKEKEKIVKLYLKNTKNINNWDLVDLSACYILGPWYYKNKNYSQIYKMARSGFLWEERIAMLTTFYFIREKDFNLTLELAEYFLTHEHDLMHKACGWMLREMGKRDIKPLLVFLDKHGAKMPRTMLRYAIEKLPQHIRKKYLAR
>NC_010644.1|WP_012414428.1|269477_270395_+|DMT-family-transporter
MIYIKLFASILFWSLTFYFVKTALAECGVTTLVFARSVLGLLVVTLFLREFKWLKTLTKKDWLRFFFLAMVGVVIQQNVQGYATMHTSTNHAGWLVALSPIFVAFTMVAFFKERLPKDKMMGFIICILGVLLIFLSKQTFVDGSSMSTLKGDLIFVATAVNWVFYVVPMSIWFKNMPNLRITFCLFLAAVTIMLPIEIVSGSLKDFAHMGPRALSALAYLGIFCSGFAFIFYNEGIEKIGPSKASAFIYAQPLFTMVFGYILLGEVISKEAFIGGALILCGLYLINVRRKRLKRFYITLIRYFRV
>NC_010644.1|WP_012414429.1|270395_270662_-|hypothetical-protein
MDNKDIIETEIIEAEVLDENGRPVNSKKTANTQTAKGVETILKAIVVLAAGFLMSVLIAVVFIILFIPVLILKALGLIKSDFQIRRFK
>NC_010644.1|WP_012414430.1|270726_273441_+|valine--tRNA-ligase
MLPKAYEPKEVEERLVKEWQAKKIFASNIDKNKVPFVIVIPPPNITGALHIGHALNCTLQDVLIRTERMLGKESFWVPGTDHGGIATQNVLEKKLAKEQKITRHDLGREKFLEEMWKWYKECGGAILNQFEKMGWAIDLSLENIRFTMDEKRAASVYECFKQWWDKKYIYRGKRMINWCVRCNTALSDIEVDHEQQKGKLYHLHYKGEESFDGIIIATTRPETIFADAAIAVNPKDENYQGVVGKKVRIPLTDRYIPIIADEDVEIGFGSGALKITPAHDPVDYVIGQRHNLPVISVISDKGKLINCPEKYVGMDREAARKEVVKDLEEQGFLVKEEKHDNAVGTCYRCGSVIEPYLSEQWFVKMEELCAPVIEAAEKEELKFHPASWKHSFVNWLKNIQDWCISRQIWWGHRIPVWYCTTCSKNGLTYMETKQGVKEVAKVSFEDGAKPVVSHTKPHSCPDCDGTDFVQDPDVLDTWFSSALWPISTLGWPEKTKELEYFYPTSTMVTGYEILYLWVARMAITGIDFTGKLPFKDVFLNGIIRDKTGKKMSKSLGNVIDPLDMTAKYGTDAVRFSLLMQAVLGKDIPYAEESIVGARNFCNKIYNASRFILMNMGDLKGPLKMPAEPKELADAWLIDRYNTAIKTAKDATLKYNMAAAANVLYHFLWGDFCDWYVELAKARFESDREYVMSILVNVLYGTLKALHPMMPFITEEISSVLKPYTGADKEFLLQDSYPLCDESALNPGAVAKMDLIKGIISAVRTVRSEFNVPPAQKLNVSLKAVDDEELKTVSDYADYIRLLCKTDNLTASKEAVKKPMSATAVYSAVTAFIELEGIIDVEKEKARLSKNIAAARANIANRKARLSDERFVNNAPKEQVEKVKAELAAEEIKLTSAEQALADFA
>NC_010644.1|WP_012414431.1|273686_274817_+|hypothetical-protein
MKIKFIAGMSVLLVMLTGTSVCAQAPVTLKDYQARTKHDLQLLEKKLGKPLDLKENKESVYNLAGGVALLALTYQMPKALLSAAGKAEIELYEKVLSYAVKEDALLYSYLVKTEPRHVLYHLEYWGLKEELSSVIHRGTSHKGYIINFEKEYSQLSDELQRFIRKTERMDKSLFDHAAFLKEKRAVLEPYVVGRQHIHFNYTQTLETRIAIKNFKTTSKAAAKAGQIAVNPLEAKITRKIAEINKARPSGATLTIKGGKNIATAALLIAGSAIVLDSFASNPELGRLAQNPALFTDADVKILNEAEKNDVLAQSLKAHSDAINCMTSLDKEELEELLGESDKRVETVKKAVKFGNNSKLKENLKKYGLSKGVFEMP
>NC_010644.1|WP_012414432.1|275107_275410_+|hypothetical-protein
MKKVLALAAVVVMLAACAAPASYMGFALVSETSEPTLVTASTGTKTGKACAKNFLGIYATGDMSVEAAKKAGNIRTVATVDREVKHMVIIGEVCTVVTGN
>NC_010644.1|WP_012414433.1|275501_276794_+|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MAKIFTISLGCSKNLTDTEEMLGILNHKKHYLVADESEADTILINTCAFIKPAREEADREIKRASKLKAQGKIEKLIVAGCLTQKEGKSLPSKYPLVDAFIGLKGIEKIDNVIKRPKHSFCPAPDYIKAPDFKLQLTAPHSAYLKVADGCNNRCAYCTIPAIRGPFRSKSMEDIVAEAKAMEKNGVKEISLIAQDTTAYGQDIFGKPSLVKLLKKLVKIKGIEWFRIMYAYPETVTKDLLDFIACEPKICRYLDMPLQHISAPVLKAMNRRSTEDEVRAKIKLIRQIVPGMSLRTNFIAGFPGETAEDFEKLKKFIAEAKFNNVGVFAYSKEDGTPAAVMKRQVAEKIKKQRVEELVSAQSRVIDSINRKLKGKTVKVLLDNLFCGRSESDSPDIDGRVEVKGNKKYKAGDFVKVKITSAKGYNRTGKII

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Crispr_ID: NC_010644_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010644_2

894999-895100

Orphan

Consensus_repeat	Method
ACTATCTATACCCCGGCTTAGAAGGGGAAGCCGTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010644_2

>merge|NC_010644|2|894999-895100|CRISPRCasFinder
ACTATCTATACCCCGGCTTAGAAGGGGAAGCCGTATTGCCCCGTCAAGTCTATAAGAGTGTCCGGACTATCTATACCCCGGCTTAGAAGGGGGAAGCCGTAT

>NC_010644|2|2|894999-895100|CRISPRCasFinder
ACTATCTATACCCCGGCTTAGAAGGGGAAGCCGTATT	GCCCCGTCAAGTCTATAAGAGTGTCCGG
ACTATCTATACCCCGGCTTAGAAGGGGGAAGCCGTAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010644.1\|WP_012414993.1\|904527_905205_+\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414985.1\|897719_898250_+\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414978.1\|884963_886106_-\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414984.1\|895165_897514_-\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414989.1\|901566_902097_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NC_010644.1\|WP_012414990.1\|902166_902832_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NC_010644.1\|WP_012414986.1\|898260_898965_+\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414988.1\|899921_901553_-\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NC_010644.1\|WP_012414992.1\|903398_904043_-\|porin-family-protein	unknown	unknown	gnl\|CDD\|379226
NC_010644.1\|WP_012414980.1\|887054_888305_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NC_010644.1\|WP_041691255.1\|879165_879960_-\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414982.1\|889694_894326_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|225112
NC_010644.1\|WP_012414979.1\|886241_886946_-\|MIP-family-channel-protein	unknown	unknown	gnl\|CDD\|235453
NC_010644.1\|WP_012414991.1\|902836_903292_+\|YbaK/EbsC-family-protein	unknown	unknown	gnl\|CDD\|239825
NC_010644.1\|WP_012414987.1\|899397_899814_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NC_010644.1\|WP_012414976.1\|880184_883742_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NC_010644.1\|WP_012414981.1\|888330_889602_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NC_010644.1\|WP_012414983.1\|894554_894713_+\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414973.1\|877311_878103_-\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012414974.1\|878412_879081_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010644.1\|WP_012414982.1\|889694_894326_-\|PAS-domain-S-box-protein	gnl\|CDD\|225112	COG2202, AtoS, FOG: PAS/PAC domain [Signal transduction mechanisms].	3.41661e-15
NC_010644.1\|WP_012414979.1\|886241_886946_-\|MIP-family-channel-protein	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.82715e-78
NC_010644.1\|WP_012414991.1\|902836_903292_+\|YbaK/EbsC-family-protein	gnl\|CDD\|239825	cd04333, ProX_deacylase, This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.	1.38083e-45
NC_010644.1\|WP_012414987.1\|899397_899814_-\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	6.44469e-40
NC_010644.1\|WP_012414988.1\|899921_901553_-\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	3.23287e-38
NC_010644.1\|WP_012414989.1\|901566_902097_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	3.53248e-16
NC_010644.1\|WP_012414990.1\|902166_902832_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	5.01012e-44
NC_010644.1\|WP_012414981.1\|888330_889602_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	3.8338e-82
NC_010644.1\|WP_012414980.1\|887054_888305_+\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.49736e-63
NC_010644.1\|WP_012414976.1\|880184_883742_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NC_010644.1\|WP_012414992.1\|903398_904043_-\|porin-family-protein	gnl\|CDD\|379226	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	5.68568e-09

>NC_010644.1|WP_012414983.1|894554_894713_+|hypothetical-protein
MSGRKKKKNVLKKDGEISQGACKEKTPIESLSDYLIGDGWKIMTFLGGKGKK
>NC_010644.1|WP_012414982.1|889694_894326_-|PAS-domain-S-box-protein
MAKGLFSFFSHEMLPETKAVFDNAKSLFENFYAPTLIIDDRGSILYANQKALDLLSYTAEEIDNTQITKLSIKKETITQQPVFYQKITAKDGKKIYSKIAVTIFEKEKLCILNIEELSPGSQITKDNIFQMTDSSPYAMIIRDKDGIVLFWNKKAEELTDVPAKDIIGQNLGVFVKDKKALKEIEKRDKEVISSKKQQYIQNLHIEFGDKKRIYNIFKNYMESSYGDVFLFDIFEDITVSVAENVKNQQVLAFLQALIDNVPLSLYARDKHGRYLLRNKKSVEMFHGGDTADFSENIAMLYDEEVAEDAWKNANNPKHESEERVKGYLSRENTVLKTGKILDIPVEEYKQPDGSTALIHLTKVPVRDKDGKMISVLSVAQDITADVKKERDILETKKLLEAVFMHSPIPMYVRDIDGKIILSNKTSEELLGRDTVRAEYVKDDAMDHYYISREQEMLKAGKIVDMPEETFITKTGDEFILHLIKAPIFDETGKPFWMLTIAEDITAKRKSEKEIITLNEFLQTVVDNLPVSLIAKKYNGEYILWNKKSEELFGYKASEVVGKDFYQTGVSQDLKDYIKEQDARVFGSGREMDIPQELISTVKEGVKIMHTVKTPIFKKDGTPDYLISVSEDITVKSKMEKQLRESREKYSLLVENSGEGVIIVERDKIIFANTTFAKLMGYDSVEELADVNINNLVSPQHIKEFEEVYNSVSSNVDVISPHDITLLKKDEDEVQLEVKAVTSKYMGKKIILMFFKDVTIVNRAIHDLRRDRELFRNSFENYPSELAIVSHNGYVSQLNSAARRMFGVRLEDRNVYRQFYIKPFLNLAARKKMKRLETAETEFIFDPSKFDGNLIKLSNGNKKNLSLKLVPINKKEIKKNTLSSEYLVVINEIIPIKADLDIQDVMLLNIPAVKCKTDGKIEAVNSAFFTLGLAKELCQKGALINNMFIKSDRRVVYRDMEELFKQGYIYSRFYHLQTPVPMEVEFNAAVTEDRGFIVTLKNNTAHKQMLELLAERQETTDAVLSVTNGAVIISKMRGSFPGKIVRANKEAQELFGYNLAEFFEMYLDNLMVSRNNSKTDFAKHIIEQHIEKIGKEGKAIFTANVYNKENKEFLAEIMLSLFNINSELMLLAVIRDVNSIVKLAGGAKLQNNNEMESIKKLLPGVMLKVDAEGIVEEGYAGGNSRGGIYNIARYQYKSPYSYLPKDVADHIIYSIKEAVSVNTPLTFSFSIKESDGIKSYEAAVSPIASEQKAFLLVREITNKTEFERRIQELYSVTSTHPERFTNKVDEILNLGKEIFKADAGFIMRYSGKNDGSFTIVYASENDININNGMVFPEEKCFSNIKMGDTIVSDEVNLTDCSSNSFCKNKEIKVLIAGPLYLSGEVTGALCFVSQKKKIKIKEGDSDFIGLMSRLLSFGIELREADKIVLESKSRLEKTLKYLSLPAAVIDKNGKVEFVNGKFQMVYNPKTEENLIGKDFFEEFTVSPPSARKKFYSINEVDEAFSWEQSFVTGTGKRIECVWKVNGIKDKNGKLSAYSLIADFK
>NC_010644.1|WP_012414981.1|888330_889602_+|serine-dehydratase-subunit-alpha-family-protein
MNLLKEVLKNQVYPAMGCTEPVSVALCAAYAAKELGKPVQKAVFYLDAGTFKNGLAVRIPNTSGERGNLLAGTAGLLIAKPQLKMEILKAATPSILKRAKQLIDDKKAFIKVAPCKKHFYIKVEVENGKDKASCVISDSHTTVSKLTKNGKVIFENKPSKKKEDNYKQLLGKATLKDLIALADNADNTDLKYIKKGVEMNLNACKEGKKLKKVGFFLESTVEKSILQKNLVTETKIMAARVADARMDGIAVPVMSSGESGNQGVVAILVPYNVGKKSKVKEEKILKSIAFSHLLNGYVKVYTGSLSPLCGCAIAAGVGAAGAIVYQQNGDLKKITLAINNIISDIGGMLCDGAKSGCALKVVSSVDSAIRAAYMGLNNYGITELEGFIGKTAEETIQNLGNISITGMCDVDAVIVDIMKKKVK
>NC_010644.1|WP_012414980.1|887054_888305_+|MFS-transporter
MKMTREIFIITLANALILAGYGMSVPFFAIYLNVERALPASMVGAVIAISTIGRAFASGISGELSDIFGRKKLMNASLVLGAVFLALMGLGMILDAHYIWIIIFHMIASFFGAFFRPSSNAWVADNVAPKNRLEAFGYIRIGLNLGWAAGPALGGLIANYSFGAAFIITAVSYIGTAAMLQAKIKETFVRSKEHKSKFTDMILELKNQRLAKLCALIFLISVVAAQLVTGLSLHGVKYIGLTQAQIGLLFTIDGSIVVLLQYHASKIMTDMRITTALIIGCIIYGSGYILVGAAHGFTLAAIGIALVATGEMAISPGSNTLISNIAPEKARGRYLGMQEVSRHIGTAAGMFGAGVMIEYLSPISQIIPWLLIGFISFTVAFLFYKIKPMFTDEEDGINQTPVPPPPALEETQITGN
>NC_010644.1|WP_012414979.1|886241_886946_-|MIP-family-channel-protein
MSDIRKYIAECVGTMFLVFMGCGSAVLAANHVGNLGISFAFGLSVLVMVYAIGPVSGCHINPAITLAMLVFKRIKTKEAVWYMVAQFIGAAVGAAVLYGIANGTVGYNILINGLGQNGYGAVGSPGGYCVLSGALIEFVLTALFLFVIFGAIHKNTPAGFAGIAIGFALVLIHIVGIPVTGVSVNPARSFGPALINLIAGNSFPMSQLWLFILMPSLGALFGGWMHHVIYKESN
>NC_010644.1|WP_012414978.1|884963_886106_-|hypothetical-protein
MIILKKLISIFLCGVLICGNLSAQVPAGEKHPQTLKEYQTRLKQDEVTLAGMNIPLKIFIGGGIAFVAYKILNTASVIRVDVKVGGYIVENYHLNKSFIDDVIDYATVTKDVNLRNKFLTLRRRGVRSGSGFLDSFATLEAHEVSLNIQNWQKLRLSPKISKSTYMIGAIDDISFSSAYILKEYLDERMPVKKFLQMKEKLYANIENTTDLIPVKRLREEIFVNKLPQTEQAQALLELKKYRNAYLEGKGMIYEHAAVRDESWALRNAKGVKGIVKRFLWVSALLFTVDTLSAKTSDDAAVIRIKNNFALFLQADDSVLNQIEKNKELTAAIKVILDDVHDLAQKPEEALLEEQKKHEDLKKQVKVKLENKVNLKKYGIK
>NC_010644.1|WP_012414976.1|880184_883742_-|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MAKLVAMDGNSAVAHVAHATNEVIAIYPITPSSNMGEISDLKSAKGEKNIWGNTPIVSELQSEGGASGTVHGALSAGALTTTFTASQGLLLMIPNMYKISGELTPTVFHVSARAIATHALSIFGDHSDVMAVRQTGWAMLASANPQEAMDFALISQAATLEARVPFLHFFDGFRTSHELNMVDPLTKEQMLEMLDADLIAKHRTTALNPEHPTIRGTAQNPDVYFQGREAVNKFFTATPAIVKKYMEKFEKVAGRKYDLFEYVGDADADKLVIIMASGADVAETAVECLKGSKVGVLKVRLFRPFSIEHFVNAIPKTVKKIAVMDRTKEPGALGEPLFLDVCSAFLTEEGRKAFPVTPIIVGGRYGIGSKEFTPGMVKAVFDNLAKDQPKKSFVVGIIDDLTDSSLPNSIDCDSLGTSDTFGAMFFGLGSDGTVGANKNTMKIISEKSDNYSQGYFVYDSKKAGSMTTSHIRFGKKVIKAPYLIEKADFIACHMFSFLEKYDVLSKLKIGGTFLLNAPYPADQVWDHIPAEVQQQIIDKNAKFYAIDASEIALKTGMGARTNTIMQTAFFAISDVIETAKAIEAIKEAIKKTYSKKGEEIVNKNYAAVDAALDGLKEVKYDKKVTSKLNVKPSVPSSAPKMVKEVLGEMIAFRGDSLPTSAMPEGGIFPTATTQYEKRNIALLCPQWDPEVCIQCGICSLVCPHAAIRMKAYSADQLDNAPKTFKSADGKADLAGNKVTIQVAVEDCTGCGACVFNCPAKNKTNPERKAINMTHQLPLRDTEIDNFAFFLGLKSAEVKTKKESIKGSQLQTPLFEFSGACAGCGETPYVKLLTQLHGDHITIANATGCSSIYGGNLPTTPYCKRDDGKGPAWANSLFEDNAEFGLGIRLAYDQLKSDAEALLKDVAANVKEVEPLAKEILEAKQVSTQDVDAQRARVAALKEVLAKQKCAHCARLASIADYLIKKSVWILGGDGWAYDIGYGGLDHVLASGKNVKVLVMDTEVYSNTGGQMSKATPMGAVAQFAAGGKTQPKKDLGMISMTYGNIYVAQISMGANMYQAVQALAEAEAYDGPAIVIAYAHCIAHGIDMSKGMGEGKKAVQSGRWQLYRFNPDLKAQGKNPLTLDSGAPTIDVADFMGGENRFKTLAKANPEVAAKLLNLAKAEYDWRRSVYEQLANFKCDVKKAD
>NC_010644.1|WP_041691255.1|879165_879960_-|hypothetical-protein
MKSIKNIILMFDPYKQSFLFFKYTWLTVVFICAAVWLVYVFRDSGFINGVLYNPIVYLPNFLIHEFSHRFAGPVMMILGAQYGDAMNFQAVLVIIAGNAGETLVPVFLFFCALRLKGGRMLMPPLLYWISTTWYDVARYVSDARAMTFHLASSDMVSDSKPGTKGDWWYILDYFDALEYDILIGHVFYFIAAFCLVMAIFSAWYIFTHLEEFALEGKKNINKTPVKMQTYEELTKDPFSNIVPPPSQTDNSMHVIKIKPKNEDL
>NC_010644.1|WP_012414974.1|878412_879081_-|hypothetical-protein
MRKLFFIFTILSFSSFLLAQEAPSVAAKKDTSSSRAYKTVPSNEYRHYETPEVAGSSQQEDRKNQKHSKAIQNVVEKRLTPEEKEKILENLRKTSQEIEKTKQEALAARKASSKTLYAFVEETSQNGVYTEEEISEIKNFLIISVTGSADGVSDFDAKEAINKADIDQNLKALDQIILSYDKLGNVNGVVETLKMKHFLNVVKTKKEVYENALKNAVSSKNK
>NC_010644.1|WP_012414973.1|877311_878103_-|hypothetical-protein
MKNTKVLLAVLFLVFAITAKAVPPKNFDLSGVSEKINVLLQEDNKTKFKKDNPVLPQNVHTNNCDGYHCDAYNCALAGNENAPAHKKGTHTNNCDGYHCDAYNCALAGNENAPVPPKHKPVPPQNKSGHTNNCDGYHCDAYNCALAGNENAPAHNKGTHTNNCDGYHCDAYNCALAGNENAPVPPQTKQNIIDEEYFQYGYYKLNPYYNSVDPHSVKYVQTKENDKDVVFAVLKDGRIIKKNDSKKINPYYNPSDPHSEKYLD
>NC_010644.1|WP_012414984.1|895165_897514_-|hypothetical-protein
MKRPLRLFFVLVFLLIFSSICCKADIYVSKVIPEIGFDILTINGKEVVRVKLPYSVKAKIDTDEPAQVKFQIYTPKSDFINSISGTKSLKSFSSSKTTVKNILSSKSFADYNMLKAITEGPKTKAGTTRGSDEEDVEQNMYKIWESNIFTLTPGEHEIQEEWDGYGTVNGKKYPMGGMILTLVRDVKTDLIVGSHSSVGEHFMPYYSDFEVVNEDNYLKVKETKMTNGDAQHGYIIVKNYGCGADVTSTEAYNAGVEAIAREYNGFCANNVIGYGFVQDDNDKTKYKNFPADTLNTMTATIRDLNGKPVKTNGEEYYLYFYSVPVKKEPTLPFGKYSGVIFMMQTKMPVITEDPDDGGGDEPPPPQPGVVTADNLAVTLTSSQVSLGGGISVVKEFTPVKYAYNVNVANQPAKLNVEVHVEKTAFVNGLLAGAKSAKANSKDLNSAVLLNTRGQEIKVRSTKSAPVIDTDTVKVWEGGVFEQPVGEGNLAGTWDGMGTVGSSKLFVDGDFILLVRDAQTGQVLKSVQKNITRFSLLYSDTKFEEEKRNGSAGVDSMAVLKDARAVTMDGENTGYILLKDYKCAMNYTSEAFNKGMQGMLNYINSECPSGTIVTSFSSLKELTADKISQDDIVLYNEKGKLLVTNSEQYYLLTLNRNKNQNLTLNTGKREGFVTIAKFVMPVATGEYEPSTGVEDEDKPDAPKVTFLGAIRNQDLNVRLENCGNGKCDIYNLSGLKIGSVSLTEGENRIDIGKLRERGNGVYIINGTAKDKTGKNVKINGKVF
>NC_010644.1|WP_012414985.1|897719_898250_+|hypothetical-protein
MKNIIVSLCFVLCLVFFAASSQAETITMVTILPKPAAAFVNLDVKKDSQFYQMELGKNTEMEVETKEINVENVFVGNSMQVATLDTTSEASFKTANVGGTLVVDGADGIAAKEIKFNAVTINNVALEKPAVKAAASDGKAYNDTSVSKAAATLAYQTIPAAPLNQASGTYRALVAQ
>NC_010644.1|WP_012414986.1|898260_898965_+|hypothetical-protein
MKKFIPIPFVLLLTAFCFAETIDSVAFHPSPTGNYDVLNISKNLELKEKANINFLEAKGSLTVKGTDGGAGTIVVGKGLTVGQAASLPSAELITPKLDITGTSEVDVKGNAKIAKLANDANTKAATFNAQNVLTCKVKGQDSASNISVQTQGGGYAAFPSASASGTLRWVEIQDISGGKHMILVEQSAGTANCKANDYCCIDPSSTACLTSMKDNIAAASTIQVGNESQTIICN
>NC_010644.1|WP_012414987.1|899397_899814_-|peptidylprolyl-isomerase
MIKQGSKVKFDYTLKVDGEVRDTSEGRAPLEYVHGAGHIIKGLEKELEGMKAGESKVVTVAAAEGYGEVNPEAKKTVPAEAITNAKEIKVGDVVGAQSGGHSFQAVVTKVSDKEIELDFNHPLAGKELLFDVKIVEVN
>NC_010644.1|WP_012414988.1|899921_901553_-|DUF2207-domain-containing-protein
MKKIYALLILLSALPGLNAAVLTDYKADITLADSPAVLVKEKLVFDIGEDETPDTFFKDFNTIHNSALWVKKDKDFKILSVEKDGQPVAYTEQNTPNSKRIFIDSSDLKKGSHEYTVYYKTSLIKFYSDSDELYIDTTGSFNKYNPSNISVTVNLPKGVIPVYLKTLYGVDGKLAEFNGGREYSEGKLNFNFENKDNKDASVIISLGLPKGTVSAPAVSEFHDFMADNKKIVLPLLIIFTLLIYYIIVWIVLRNRKPQEDKTVSTPPSDLSVAAVRYLYKKNPGQIKDRYKMLTSSILNMAVNGILKIVLSGKNIYLEKTGKENKSISEDEKALLSVLFEGGAKKFTPADKTSKEIQSIISAHKKNAKEHVKSKYIRSDKALDITGYVLGLLGFIFLLFSSGGGILYLGSMFIFIIITVITFRRFFPPFTDAGIEKISEIEGFRKFLSGSDNNGQAKLDNDVFAKYLPYAVALGVEHKWVSKYAAYVESVYSETQFNWCEIDFGSELFEEHHTSKSGQLAFIAGSGLVEEFSKTKNISYTEDL
>NC_010644.1|WP_012414989.1|901566_902097_-|LemA-family-protein
MTPLLIAAFIIFPTLGFCAYSYYKMQKLEKALNTAWNTLDIHLRARNDVIKKMASIASYGMQDNKSFLSLANNLKEEIDFSADPVKRTLEEKVLAENFSSFLRQLYLIKKIEENEDFQSCKTQLEKVERKIKYASGGYHHAVRDMNTVTGAFPVNIVAKMLDFNKKEYFDFTFTKI
>NC_010644.1|WP_012414990.1|902166_902832_+|HAD-family-phosphatase
MNIKDIKLVIFDMDGLLLETEKLYMDLFCKTMDELGYKADKELYLPCVGVGSANGRAYLKSKLGQDFPAERHEGLMFKRAYDYVIEKGVDHRPGVSELLDLLDSLNINKGIASSNDKEFVLHALKNSNLINRFSVINTAQDVKKTKPSPDLFLKTAKDFGVPASQTLVLEDSENGVLAANAAQMRVFMIPDIKMPSPEIEKKATAVFNSLHDVVDVFKRNF
>NC_010644.1|WP_012414991.1|902836_903292_+|YbaK/EbsC-family-protein
MIPAKVKDFLDKHCLLAIEHEEGSTATSVMAAEKLGVEVGQIAKSLLLKNKEGQFFLILCAGDKKISSSKVKEITKSKAEFTKPQETIDVTGFAIGGVCPFGLDNVPLYIDKSLSVYDAVYPAAGTASSSVKTSFKQLLGILNAKECDVTA
>NC_010644.1|WP_012414992.1|903398_904043_-|porin-family-protein
MKKIIAVLFVGMLISTSAFANEFGFGFKLGATQKKTNIDKFKDSIQPYMRSTDLTENNFVYGLEGFYEYSLNNDASIGVKLGFEGISKDELEGVSLSNLKYDVEITSSVLPLTVYYKYNLNEKFNVWGGAGVSMVFAKLKDGMESYKENKVFPHINAGVEWRISQMMGLGFDARYSFSSKIDKWDGTTFYATASEKVMLDLDGINAGLTLRFYF
>NC_010644.1|WP_012414993.1|904527_905205_+|hypothetical-protein
MEYGKNARIKIKLKTGEEFEAEGDKAFINEQKNEFLTLIGKTNGDFAKMQKTEFARPKQFDSAPKEYKPDPEAYSVAQNFNIPKFLRQAQRKESLSDVNAQKEDTSFTNNAIVINALSVWQNVCRTEGGIVVIRRKFKALTPSSAALIIAAAAKILLKEPLYGALKLSKSMKLSGFMEGNDRLDRILSSELKQGTLSFEGTKRNRSYKISDEGFARAFVIAEKLI

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Crispr_ID: NC_010644_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010644_3

990759-990864

Orphan

Consensus_repeat	Method
ACCTATTGATACGCCTTGCAGTGTTGCAAGGCTTTTGCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010644_3

>merge|NC_010644|3|990759-990864|CRISPRCasFinder
ACCTATTGATACGCCTTGCAGTGTTGCAAGGCTTTTGCTTACGCAAAGCCTCTGCCTTCGGCATAAACCTATTGATACGCCTTGCAGGGTTGCAAGGCTTTTGCTT

>NC_010644|3|3|990759-990864|CRISPRCasFinder
ACCTATTGATACGCCTTGCAGTGTTGCAAGGCTTTTGCTT	ACGCAAAGCCTCTGCCTTCGGCATAA
ACCTATTGATACGCCTTGCAGGGTTGCAAGGCTTTTGCTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010644.1\|WP_012415067.1\|989089_990688_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NC_010644.1\|WP_012415069.1\|997172_998087_+\|lysophospholipid-acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|153246
NC_010644.1\|WP_012415074.1\|1001626_1003192_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NC_010644.1\|WP_012415064.1\|986334_987462_+\|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|235947
NC_010644.1\|WP_012415066.1\|988472_989087_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|376779
NC_010644.1\|WP_012415071.1\|998630_999743_+\|DUF3108-domain-containing-protein	unknown	unknown	gnl\|CDD\|378635
NC_010644.1\|WP_012415060.1\|982828_983263_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377011
NC_010644.1\|WP_012415076.1\|1004053_1004584_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NC_010644.1\|WP_012415062.1\|983965_984994_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NC_010644.1\|WP_012415063.1\|984990_986286_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224153
NC_010644.1\|WP_148204471.1\|976866_978576_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|131258
NC_010644.1\|WP_148204472.1\|1004855_1006133_-\|outer-membrane-protein-transport-protein	unknown	unknown	gnl\|CDD\|367457
NC_010644.1\|WP_012415065.1\|987434_988352_+\|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379163
NC_010644.1\|WP_012415072.1\|999756_1000755_+\|D-glycero-beta-D-manno-heptose-7-phosphate-kinase	unknown	unknown	gnl\|CDD\|274029
NC_010644.1\|WP_012415075.1\|1003332_1003806_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|234860
NC_010644.1\|WP_012415070.1\|998079_998634_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319806
NC_010644.1\|WP_012415073.1\|1000806_1001544_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|133010
NC_010644.1\|WP_012415061.1\|983304_983928_-\|hypothetical-protein	unknown	unknown	unknown
NC_010644.1\|WP_012415059.1\|978727_982777_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NC_010644.1\|WP_012415068.1\|991056_997116_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225248

Protein	Function_ID	Function_description	E-value
NC_010644.1\|WP_012415067.1\|989089_990688_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	2.18413e-173
NC_010644.1\|WP_012415069.1\|997172_998087_+\|lysophospholipid-acyltransferase-family-protein	gnl\|CDD\|153246	cd07984, LPLAT_LABLAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.	1.0884e-57
NC_010644.1\|WP_012415074.1\|1001626_1003192_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_010644.1\|WP_012415064.1\|986334_987462_+\|nicotinate-nucleotide-adenylyltransferase	gnl\|CDD\|235947	PRK07152, nadD, nicotinate-nucleotide adenylyltransferase.	2.24324e-132
NC_010644.1\|WP_012415066.1\|988472_989087_+\|ribosome-silencing-factor	gnl\|CDD\|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	9.94656e-31
NC_010644.1\|WP_012415071.1\|998630_999743_+\|DUF3108-domain-containing-protein	gnl\|CDD\|378635	pfam11306, DUF3108, Protein of unknown function (DUF3108). This is a bacterial family of putative lipoproteins. Structure 3fzx, the first structural template for this large family including several homologs in the human gut microbiome and in metagenomic datasets, folds into a beta barrel that topologically looks like a small-scale porin (such as FepA). Bacteroides fragilis glyA is a putative exported protein, and this fold is of the YmcC-like type, with a predicted signal peptide SpI cleavage site AGAMA\|QNQDC, and a Phobius server prediction of non-cytoplasmic localization for amino acids 21-236. The possibility of it being a membrane protein can be ruled out by the hydrophilic nature of the solvent exposed surface outside the barrels. Analysis of sequence conservation suggests that an area near Glu172/Trp206 is potentially interesting. These two residues are also conserved in Dali hit Structure 2in5, a hypothetical lipoprotein classified as a new YmcC-like fold in SCOP (SCOP:159271, with a 12-stranded meander beta-sheet folded into a deformed beta-barrel) despite large structural differences between the two structures, suggesting similarity in function.	9.68901e-52
NC_010644.1\|WP_012415060.1\|982828_983263_-\|hypothetical-protein	gnl\|CDD\|377011	pfam03255, ACCA, Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit. Acetyl co-enzyme A carboxylase carboxyltransferase is composed of an alpha and beta subunit.	0.0068177
NC_010644.1\|WP_148204472.1\|1004855_1006133_-\|outer-membrane-protein-transport-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	8.0687e-52
NC_010644.1\|WP_012415062.1\|983965_984994_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	4.90578e-67
NC_010644.1\|WP_012415063.1\|984990_986286_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224153	COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].	8.99738e-45
NC_010644.1\|WP_148204471.1\|976866_978576_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|131258	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA., lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	2.636e-173
NC_010644.1\|WP_012415065.1\|987434_988352_+\|LytR-C-terminal-domain-containing-protein	gnl\|CDD\|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	4.40339e-05
NC_010644.1\|WP_012415072.1\|999756_1000755_+\|D-glycero-beta-D-manno-heptose-7-phosphate-kinase	gnl\|CDD\|274029	TIGR02198, Uncharacterized_sugar_kinase_BU060, rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	1.41561e-124
NC_010644.1\|WP_012415075.1\|1003332_1003806_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|234860	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional.	4.09864e-52
NC_010644.1\|WP_012415070.1\|998079_998634_+\|HAD-family-hydrolase	gnl\|CDD\|319806	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases. This family includes the N-terminal domain of the Escherichia coli bifunctional enzyme histidinol-phosphate phosphatase/imidazole-glycerol-phosphate dehydratase, HisB. The N-terminal histidinol-phosphate phosphatase domain catalyzes the dephosphorylation of histidinol phosphate, the eight step of L-histidine biosynthesis. This family also includes Escherichia coli GmhB phosphatase which is highly specific for D-glycero-D-manno-heptose-1,7-bisphosphate, it removes the C(7)phosphate and not the C(1)phosphate, and this is the third essential step of lipopolysaccharide heptose biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.11323e-64
NC_010644.1\|WP_012415073.1\|1000806_1001544_+\|3-deoxy-manno-octulosonate-cytidylyltransferase	gnl\|CDD\|133010	cd02517, CMP-KDO-Synthetase, CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.	1.1604e-113
NC_010644.1\|WP_012415059.1\|978727_982777_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.99254e-05
NC_010644.1\|WP_012415076.1\|1004053_1004584_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.39102e-56
NC_010644.1\|WP_012415068.1\|991056_997116_+\|hypothetical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	5.46999e-60

>NC_010644.1|WP_012415067.1|989089_990688_+|arginine--tRNA-ligase
MLDNLKKDIETKLFNAEVFEGAVLPPVDLTPAPPHTGADISLTWAMSAAKTLKKNPLEIAKAAVKVISEVTFVASASYAAPGFINIILEDSFISSSALDRRLKNRKTAGENKERVLIEFVSANPTGPLHVASGRGASLGDSLVRIFNALGIQCDSEYYVNDSGNQAMLLGVSLKARVNGQEPPENGYHGSYLIEMADEIREMSKDWTEEQFSIYAIEYLIKTHQRDMQAFNVNFTRWFRESELYKESLPAKALDFLKEKGLAYEADGAVWFGTTKDNDDKDRVLVRADGRPTYFLADIAYHKNKYDRGFTTLVDILGADHHGYVPRMKAAVKALGENEESFVPIIHQLVHLIEGGEKVKMSKRSGRFITLKELTEEVGADACRFLFASRTPDAHMNFDIDLAKKRTNENPVFYVQYVHARAASIARMAEQKHLQQAENLVDFKLTPQERTLLIKILWFKHALKNCVRDMSPHHLTTYLIELAGNFHSFYDACRVVDEDNPQTTAHRLLICDRVRERIKKGLEFLGVSAPEEM
>NC_010644.1|WP_012415066.1|988472_989087_+|ribosome-silencing-factor
MNTKELVFLTARYADEKKAENVTVIDLKGMSSLCDYIVLATVTSRPHLEAVEQEVSTNLKQVNLFKTKRDGGESNMWRVSDYGAFMLHLMTKEARDFYALDKIFSFGEVIDWQEKPQIKEVKKTAAKKETAKKTTVKKAATKKTTQKKAAVKKTAVKKTTAKKAAVKKTVKKAAPKKAVKKAAPKKVVKKAAVKKTPKKTTKKK
>NC_010644.1|WP_012415065.1|987434_988352_+|LytR-C-terminal-domain-containing-protein
MEQSRIEKIKNYLIIGIFLIIMACAFFAQRNSFIAQLYTGKAADNFNFIILSEPAIIMTYSPEKNLVTVANASLPAAKKTKNPPPELTDNQKALKLLEQKNISAKNYRFFNPSLKTSEENWNKFINTFSNWRYNPLLCAAYVYGYVKAIAQKRTNLRPYEFALLTLGLLNKEPTDFSITLDLPKSKKQTSVNEEKGGNSPLTTQDRPLIVEIYNASGEKGAALALTQYLRNINEKGLINIDVLQYDNYNKTEEQTKIIDHSGRIKEIKQLSVALGLRDNALFNENAPAAYCDAKIIIGKNFKMPK
>NC_010644.1|WP_012415064.1|986334_987462_+|nicotinate-nucleotide-adenylyltransferase
MKILYFGGSFDPVHRGHTALLKAAVKEIKPDIIHIIPAFHSPFKERSNTPFDLRMDMVRQAFKDIKVNIIFDNFEQRQNKKTFAWQNVEHIKKTYENPKIFMLVGTDALNDIPKWSNPEYLFKNVIVVAGKRVGLAAEEKLPFKYHTLKARLPRISSSQIRLEIMISGAASEELGPIKKIIDDNRLYFLNLHDWLKKNLKENRYLHSKAVSALAAQLALINEVYPERSALAALLHDCGKSMSPKELIAYCDKHNIRLPYYKEICENGPDLLHSFVSAHIAQHVFKITDEEILAAVREHTLGAVNMGVYSKILYVADTGSKDRKYKGAFTVRDLALKDLDTALVAATRMKLIFTVEAGKWLCPEGNIVWNNLVSKK
>NC_010644.1|WP_012415063.1|984990_986286_+|FAD-dependent-oxidoreductase
MKTDILIIGAGITGLSAAYHIGKKRDFLLLEQDSEPGGLCKSIEQDGFTFDYSGHVAHVQSEYVRALLKKLLAKNVSIVKRKAFAYLQDTMVPFPFQANLSYLKEDIVEECVRALMKESKNKKKSFDNFKQWAAATYGEGICKYFMFPYNEKLWQAKVEELSTAWCSTYVPKTDLEDIIKGAYFKQKENFGYNTHFFYPKKGGIGALTKALAQKTNNIIYNTQVKEIDLKNKKVITNNGEFEYNTIINTTPLKPFTSLCKGLPQEVYEKADKLKHNVVYVLNLGVNREIKNISWIYFPEEKFKFYRVGVQSSFSQEVAPPGAGALYVEISAKPGAKKPNFKELQKEIIKNLVSCDIIKKEDKILTSLWLTINPAYACYNLERETIVPCLTKTLAKHNVVSAGRYGSWEYSFMERNLLEGKVLGDEASAKQP
>NC_010644.1|WP_012415062.1|983965_984994_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MQNLSTYVFCTLCALLISSILAPALVFITNGRFTDKPGGIKNHIGNIPLVGGTAIVAGFFISLLIIRFTTDFPSGTLHSLRGIFLGGFIIYFTGIVDDLKKPKGINPGLKLLGQAAAAYILIHYGIKINFIENVWIANTLTLIWIIGLTNAFNLLDIMDGLSVSQAACASLFFIIIALPSEHIYVNFTAAALLGAALGFWPYNHSKRQKIFMGDGGSMFLGFVLAAVSLGTEYSAKNPMAVLAPILILAVPLWDTGFVFLVRTIQGKNPFLGSPDHAVILLRNKGLTPNTILALFLTASIGYGALALIVINVSDFWTYIIFAFSMVDMTAAAHMIYKFKGLK
>NC_010644.1|WP_012415061.1|983304_983928_-|hypothetical-protein
MFKRITILLIAAVLTAGCAGFGGKKDYEAMNRGRGIPSYFSHGESAVAFKIQAGIRDLKLEGVLIFKEIDYNEYSIKMLGPLGTKVIDAVMQNGVITYNYILPDINTGIIKGRFEKFIYALLLEPEEVNKVKLRADNYLEVKRKHKIGKVTYVYPLGNEFPIHMSVGSIKMSYEDYREYNNSVLPYSLYYYDTFAEVDLKFELISII
>NC_010644.1|WP_012415060.1|982828_983263_-|hypothetical-protein
MSITFILAAVGFTITFALLFYFTAKYRESAADEGVFITEPPAAQTENDVKTPSSIAATIKRASMGGPYGELSLEIDDLKEKIRDIHYHNEELRLLSENRTTELLKAISKLETRLNAFEEEYVNKLQPTLMSLIEDLEKMKPSEE
>NC_010644.1|WP_012415059.1|978727_982777_+|trypsin-like-peptidase-domain-containing-protein
MHKIFSNTVALILFASLAGQSAYTQPLPQSNIPTSAFSQYSKQSRVNELYGRIGNKIHINNTLVTKHWTDRLFSYPHREAGIKKLEQYDFYKKQDFRISREKYAADNPETSTRTEMALFPAKNAYLVNELVEEIREVSELAPNEQTILLLVRIVKSPYAHEYAHIEALIALGNIAGRNKFQSRSAEEIKALKENLGRELKYLYGFERHELIYGSGKDFDRELRKRINNTIEFLNGKKERTVFEPASYAQFNKKKEAVEVYANRVLLAATVVGGVKAGAGKLSTSGPVAAQKPTFRVRTNPSGNVRTPAAAALNTPKPTLRVTQPSQVSASYNGNAAYNGNAALKINPEVSPLTVSKAIAQPQAATVPAAKPVTVSARPQVWAVPFTLDKAIKDGKPAYFGEELKERKGYNKSQLEHMIKTGQKITEGDLLSLGYEEQEEIRQLAMSYGLYRRTFITPPLQGAAGISARKNSNKGSSSKTIVNELSLKNQQEQDQKKEKTTQSASYKSIVKKPFGYYELTPNYNALQEYLKKELSLVSKRTSFFNLIPYANQLLSNINPETETEFNTAIMTLRRNQIELLKPHAQKNYMQAESERQINLAKNYKFKLIDNTQKEMFFKFAPRQITYNGQTKYVPTLEYEIRQGVFRYRNYPDFALALMRESLDNHGFNTEVTADIENGKVTVTYETKEYIYRDSFCQGSHEIQELNRWHFHIRKHRFDKRTGTSLVANYSYDLLHPKPSDETGRLNLNGDIIYFKEFQKSDASLVSKFLYNNLTEINNKNITDSQQRERRINFKSIDGLEAPPTIGKPAIKTKDSKENSVKEILKDITVIEQYSGKPVWALYANDKPAFYLKYSYPEEASNLKKLEALGKKGFFEKYNLWDIEYPKVVTDNLKNLPEEAEEMLAVDYAKFLNSPYQSGFYGEYPFIMTAIDVSGVNPYEFVLPAAIEHLGGKPMTQQEMNQLYELFKDLNKNGVVHGDTQYNLPIKRTADGKMSVKLYDLEPLKEEEPFNKDLLDLQKMEEKALKYNLLENPASSIKPEVFSAKSAAEAAPQAKAVYNFEEVEKNIKKATFKLKNPATKKVRASGFFAEVELDGQKKIYGVIVSHAAFSQKGNMGWTNEKHTISLKVNDKQTDIITNIAAMGTTNTGGADIALLNVPEELLPHIFPLKLANTTLKKGSVTTSFGYPEGKFIKVPGRETLDISGMKITTTFNFPHGISDKSCGSPLLDKNGYVVGVHNASDISKTRSFAVNSNVITHLLNARKNNGKYEINLTYNNKNIGESINIDETVSSVSLERNKTKIAFLTTNQQGIDPANLSQLFPRLLPGEEVTLLVKNNLGQTRLITFTVPKDF
>NC_010644.1|WP_148204471.1|976866_978576_+|ATP-binding-cassette-domain-containing-protein
MWPYVKPYSFRAFLALLVAIPLGSLDAVIAWFLKPYTDNVIVARDASFAIYIPLLIIGFTIVQGGLNYFSAYLNTWVGTKVSTDLGRDLYKKLLTMDTPFFDKENSGTIVQRFFSDAFNATNSLISNLRHFLSKTFSSISLVVVLFLNSWQLSLIAVIALLIAFLPIRYVRKRMKNIVNKSIVASAEAVKANNETHAGNKIISAYNLQDYQNKRYNSIMDTTFSLAIKMVQTTNWLSPVMHIVLGIGVAAVLFYSNNLIVTGKITSGNFASFLAAMLLLYTPIKTIGNNVVDIQKAFLAIERIFEIFELKTKITEVKNPVELIRVEKEISFENVSFEYEPNKPVLKDINLKTEVGQTIALVGNSGGGKSTLVNLIPRFYDVQKGSIKIDGVDIKNIRLFSLRNQISIVFQDNFLFSGTIRENILLGKLNATEEEINNAVKSAHLDHFIASLPNGLDTVIGERGTTLSGGQRQRVGIARAFIRNACIVILDEATSALDNKSEAVVQKAIDNLVKNRTVFVIAHRLSTVQNADKIIVLNEGNIVEEGKHEELLKNLNGPYYTLYNAQFKHK
>NC_010644.1|WP_012415068.1|991056_997116_+|hypothetical-protein
MKKLAALVSILMLTAFSATAQTLASANKKFENGQFQAALTEYEQLINNSDKNTAYTAQLKSVASLLGLFQYENAAKKAYSFSLPEDNIWKARFLLFRAFTGTQVINNYGFAMDTDEIQTETEDLGKFTRDQWLNKIGQDYDLLWSIAPKLINAAIEDESDFINTKDTDTKRIPTLLDFAVTRIEGFVSLLDSGYYPLAKAELKAKNFIVQNYSGRNVTEWNIERLASVYEEASKLEGNLRNDARGFWKVQRIMIPFDRDRSFDFNDKDATAEEAAKILSVWAGFTKEEEVKTSFFQRLFGSQKSNSKFTPYAQAFAAHNSANLFNRINQYEQAHATASYCGNLQGGGSFADLCKQLVKNIEEPVLEVTHSPIAPDPQNIQYKLDLRNVNTVYARIYKTTEEELKSFIKKDSYYYPNQSYDHLRNLKKHAFEKDVLKKIMSKKPVREFQQNVKYDKKYSFLRDEVFNAPQIDEKGLYITLISRDKNFNTTTAPVLAAILNITDIMMAATSAVEGNPNNFLFDLTGKAKSPEANIFKVYTLNPVTGEPLDNVTVKAFLDHNNRVSNLSALTNAEGVTNFKGVISLSNFYSNNFRLDPIARKGNSVAYLNSMPNLSYNPPEPFEIFVETDRGIYRPGQNVEVKVTVLERVPRGFKTYSRQTKPTIELRNANYKQISKATLTLNDFGSASYKFTLPKEGLLGSYSIIVDLKDPARNTSGSASFSVEEYKRPEFEVTIAEPSAPWLYGEKAVVNGTAKYYFGGGAADAAVEYTVYRQDYVPYFFWWFRWYQPSAKEEVAHGLVKADKQGNFNFDFIPQPRDAKDEKSKSSRFTVEVAVRDEGGRTISASRSFLAAKERNFFKIDLPTGFANENTPYKVDVSMVDINGNPLEGSAEFEVYGLENKFEENSVSSGRRNNSPSLEEAYKNAKETAKVFSVALSFNKEKPTTATIPGMKEGVYKIRLKDKNGTAEQSVILLVVSANPKLDLPLITIAEHSKYYPGETARILFGSGKIKKAKYVEFYKDSFLLAQDTVKEGGASIYKVNIINNHRGGIAMRWFAVSDYLTFTDEINLLIPNNDKELTLKINPPKSVLPGQKVTWSIDVADYQKKPVNAEATVKVYDRSLDYYQTNNEQLTHANLYPASSDSGYYYRRDISNSQFNTYFVNFYTPEFLDRRYISIMPLPHFFAEYSYRNYSSRSLGGLEMRKSFAKANIAEESAAGEYIDAVMETSAVYDSDQMNAAAPTQAPVTTGAAVEMDKEAGRVEARTDMSETAYFGPHTKITNGKGKVSFTMPQRLTSWNIAVNAITKDALLGTVTAQTVTRKDLMIRLETPRFFRERDKGQIKGIITNDTNKDLIVNTVLLVKEDGQNAYSALNLADTRQTVTVKANSQASVIWEAAVADGARVLTLTATARAGQVSDGEVKELPILPSRERLVDSKVTALKEGSNTITLDTLKKDDPTREYDLIALQIDPNLLLPVMNSLPMLVQYPFESLSSLTAKYVPLAIINNLYQKYPELKKAVAALPKRDSITPPWENDNPSRQMVLAETPWIFEAEGKKITFGQIIDMFDSKLVAKYEGQMVEKISKYQNKDGGFSWFQGGESNIFMTLYVLDGLAEAANQDVKVPEQMTKNAMRFVTQTIDDYIKNVKDTGASQIVASLYASYVLTSFPKEWKESKTAFEKAKGWIEYASKYPQFMTPLGKIYAANVYHRLGDKANSDKYLDMVLDAVKVDDTVGAYFQPEDKSWLWYHDTLETHAITLRTLLKLRPENEKLADDMTKWLLFNRKGNNWDSTKSTASAIYCLVDVMKARGAFESKTAYEVKWGNIKETKSFEPFDFVSKPLRYTVFGSDANSTFLEASVNKKGKTVDFASLTAVYSTNAKVEESPKGLLNISRQYFLREKEGAVYKLKPIADGGAVNVGDEIEVQLTITTSSQFEFVHIKDPRGAGFEAETLLSGWQWDLLRRYEEPRDSLTNFFVDWLPHGIYTLKYRMRPTTPGVYKVGAAQMQSSFAPEFAAHSANMTITVK
>NC_010644.1|WP_012415069.1|997172_998087_+|lysophospholipid-acyltransferase-family-protein
MKMSKRISFLLSFTVLKVSSWLFIILPLNLGCKIAMLACGVAAKVMKKRFGLNMQNIARVFPEKSPEEVYSICMDSWKNMGRIMVEFIKAYNMSKEELSAVTEFKNFHYLQHQIDIGQAAIIHTGHFPNWEIFGISVSALGIKKAVIAQGQKNPYINKEITKMRCAYGGTVIDTDNPFFACVKWLKKGNLLGILSDQNSYKSEVYRKFFGRYCACSPLTPLLSLKLQIPVIPVKLYRKSGKFIIEFLEPIQPAEKYSQEEVNKFIDVLNKYYEDWIRENPSDWLWAHNRWKREHNAPQYKAEHE
>NC_010644.1|WP_012415070.1|998079_998634_+|HAD-family-hydrolase
MNKNKIKAVFLDRDGTLIYEKPGVYLSSPEKVVLYKSSMPALKLLTKLGYKIFIVSNQSGIGRGYFTSEQVDKVHEHLKKMIKPYVIEDIVYCPHAPWQTCLCRKPNPILGQKLAKKYNIDRSKSFMIGDKKSDVDFGINLGAVPVLVRTANGNAQIKKYGKNIKAAKIASNLLGAAKYIESKT
>NC_010644.1|WP_012415071.1|998630_999743_+|DUF3108-domain-containing-protein
MKHLIPLTTVVLAVFLVGGCTCNCKRSVPLPPDNEEVIIEEVIIYEYKTPEEISQSQEANQTAHPVIGEPAQQQPGDEKKQDFTPAFSLTPSTITPKGKAEESSKETVTEAADQNIPKSYIRDGRHFHPWVGRKFIKNGQELHPALWSNEKMKFGVHYGFVRAGTAHISTKGVVETDFGPAYVIETLANSAKVIDSVFKVRDINYSWIEVNGNSSFGYSQSLREGRYVRDEWITFDAKNKIFSGVMKKKGDPKFIKGELPGEVHDMLSSLYFVRAQDFSKGKDFIFDVANREKVYPLVVKFVKKETVKVPAGKFNCIVVEPQFRGEGIFIQQGKSLKVWITDDERRIPVKMETEVFIGNVSASLEEYSKN
>NC_010644.1|WP_012415072.1|999756_1000755_+|D-glycero-beta-D-manno-heptose-7-phosphate-kinase
MNTVKKENLKKFLTAFNGKEIIVVGDIMLDHFIKGTVSRISPEAPVPVVNVTKEYYVAGGAGNVAVNLAALGAKATILSVVGQDRSGEDLSNFLSGQGVDTSFVVLDTSRPTTQKIRILAENQQVVRYDRESKNPVSSDIGKICMENFKFLAKKADGVVISDYGKGMLSEANIKAIVDICNKNKIPVCVDPKIENFKKYKNITCMTPNTKEAFEGMGVAQVSDEKVLFDLGNKILKTLNAVSLLITRGAEGMSLFEKEKGGKVKVSSVKATAREVFDVTGAGDTVISVLTLALAAKASLKEAASLANYAAGIVVGKVGTATVTQQEILKVLK
>NC_010644.1|WP_012415073.1|1000806_1001544_+|3-deoxy-manno-octulosonate-cytidylyltransferase
MGDTIIVIPARYGSTRLKAKVLEQLDGKSIVEHVWRAAKAAGEGKVLIATESPVIVEHCAKFGAQAVLTSEACQSGTDRIYEAVKNGSEDYVLNLQGDEPFVKPQTIKGVIKLLKKDSKIDIATACYPTFNDDIYKNPNAVKAVLTKDMRALYFSRSAIPYKRELTEETKKAPYYIHCGIYGYKKTALERFVNLPPSNLEKLEKLEQLRALEDGMVIKSILIEAAGPAIDTAEDLNEARKYIRNN
>NC_010644.1|WP_012415074.1|1001626_1003192_+|CTP-synthase
MSKFIFVTGGVVSSLGKGIAGASLGKLLQLNGFKVNMIKCDPYLNVDPGNMSPFQHGEVFVTVDGAETDLDLGYYERFLGVPTTRANTNTAGGIYLTVLDRERKGLYNGLTVQVIPHITDEIKKRFTAFEKDYDVTIIEIGGTVGDIESLPFIEAARQLKLERPNKVLSVHLTLIPYIKSSDELKTKPTQHSVIKLRELGINPDMLFCRTDRPLSDSIKQKISLFCSVPKEAVIEASDKESIYLVPENFYKQNADKQIMKMLGLKPKQKFDATWFNFINKNLEHKETVDIAMVGKYSDLKDAYKSVNESLFLSGMSNKVNVNIIYVNAEKDNIKEKLANVHGILIPGGFGPRGMEGKIEAVKIARESHKPLLGLCVGMQCIFLESARRAGLKDADSAEFNTKTKNPVITLMEKYKEDRPRCGNAKVEIEDGSKAFEVYGTNNIEERHRHRYALNTKYVDVLEKAGLKISGWSDEIAEIVELPTHPFFIGVQYHPEFGSRPMHPHPLFRDFIKEAKKQKNKK
>NC_010644.1|WP_012415075.1|1003332_1003806_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MSTKYFLSFKTPVGILELTSNDTALIGIYFTKTVKESKTLPPILKSAKKQLLEYFDGKRKDFDLLLDFGAGISPFRLKAWKEMAKIPFGKTYTYGQLAAKAGNAKASRAAGGACNKNPFMIVVPCHRVLGSNGSLTGYAGGLNVKKFLLDLEGISYK
>NC_010644.1|WP_012415076.1|1004053_1004584_+|peptide-deformylase
MAVRRIVKYGEDILRQKLKPVDFKTLEPQLDAILQDMHDTCMSFQGAGLSANQIGLTHRIAMIFIPEKTPKGEAQKFKRYVVINPVIVSKKGCVTDEEGCLSLPGLWVEIERAESIVVHCLNEKGLPVEIHAKGFLAKALQHEIDHLDGKIFIDHADPKLKPEIKKELKKLSKNWS
>NC_010644.1|WP_148204472.1|1004855_1006133_-|outer-membrane-protein-transport-protein
MFKLLKAVFVICPFVFASMADSAGFALYEFSARGNAMGGAVMANKAEPASIATNPALITQLEGTQLQTGITAVIVSGSTTIGTEKRDLETGAFYLPAFFLTQQLREDVFFGLGFFPRYGLGGRYKDYETWSMGTVLREAYTVDLMTYSFNPNLAVKVTDDLSFAMGLEVMFLDFQERKHLVGGAKMDISGNSTTWGGNFGVLYNPGWAEKWAAALTYRTKTRHVATGRVKTPGLALPPAISFDGNASAALTLPDQLAFGLSFTPTNKLTMEANIMGIFWSSYSQLKIDYDDLSQSPGGPGNPPYLNENKNYKDVFRIGFGVEYSLNPTWDLRAGYVFDKSPINKKYMDTLVPADDRNIFSVGAGYNVSERMGIDVSYSYVLISDLSGRNVEKGNTVFKYEDASSHMIGLSFKYAFGNGPLSNRVI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010644_1	1.9\|266703\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266703-266732	30	NC_010644.1	1054748-1054777	0	1.0
NC_010644_2	2.1\|895036\|28\|NC_010644\|CRISPRCasFinder	895036-895063	28	NC_010644.1	829571-829598	1	0.964

1. spacer 1.9|266703|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to position: 1054748-1054777, mismatch: 0, identity: 1.0

attagttactgcatacacaacagaagattt	CRISPR spacer
attagttactgcatacacaacagaagattt	Protospacer
******************************

2. spacer 2.1|895036|28|NC_010644|CRISPRCasFinder matches to position: 829571-829598, mismatch: 1, identity: 0.964

gccccgtcaagtctataagagtgtccgg	CRISPR spacer
gccccgttaagtctataagagtgtccgg	Protospacer
*******.********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010644_1	1.9\|266703\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266703-266732	30	NZ_CP019637	Nostocales cyanobacterium HT-58-2 plasmid pHT582-1, complete sequence	27821-27850	5	0.833
NC_010644_1	1.3\|266307\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266307-266336	30	NC_013698	Clavibacter phage CMP1, complete genome	38762-38791	6	0.8
NC_010644_1	1.3\|266307\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266307-266336	30	CP053317	Salmonella enterica subsp. salamae serovar 6,8:a:z52 strain 62-3163 plasmid unnamed, complete sequence	37309-37338	7	0.767
NC_010644_1	1.7\|266571\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266571-266600	30	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	118914-118943	7	0.767
NC_010644_1	1.7\|266571\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266571-266600	30	MF893271	Lysinibacillus phage vB_LspM-01, complete genome	45576-45605	7	0.767
NC_010644_1	1.9\|266703\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266703-266732	30	MH319731	Marine virus AG-345-E02 Ga0172268_11 genomic sequence	23825-23854	7	0.767
NC_010644_1	1.9\|266703\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266703-266732	30	MK268344	Salmonella phage Munch, complete genome	192458-192487	7	0.767
NC_010644_1	1.13\|266967\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266967-266996	30	JN700520	Staphylococcus phage StB12, complete genome	2985-3014	7	0.767
NC_010644_1	1.3\|266307\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266307-266336	30	NC_012219	Clostridium botulinum plasmid pC2C203U28 DNA, complete sequence, serotype: type C, strain: (C)-203U28	56295-56324	8	0.733
NC_010644_1	1.3\|266307\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266307-266336	30	NZ_CP029459	Clostridium novyi strain 150557 plasmid pCN1, complete sequence	85018-85047	8	0.733
NC_010644_1	1.6\|266505\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266505-266534	30	MG592671	Vibrio phage 2.275.O._10N.286.54.E11, partial genome	331661-331690	8	0.733
NC_010644_1	1.13\|266967\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266967-266996	30	MK448686	Streptococcus phage Javan157, complete genome	2054-2083	8	0.733
NC_010644_1	1.13\|266967\|30\|NC_010644\|CRISPRCasFinder,CRT,PILER-CR	266967-266996	30	MK448951	Streptococcus phage Javan470, complete genome	2054-2083	8	0.733

1. spacer 1.9|266703|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019637 (Nostocales cyanobacterium HT-58-2 plasmid pHT582-1, complete sequence) position: , mismatch: 5, identity: 0.833

-attagttactgcatacacaacagaagattt	CRISPR spacer
aatcagcc-ctgcatacactacagaagattt	Protospacer
 **.**.. ********** ***********

2. spacer 1.3|266307|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to NC_013698 (Clavibacter phage CMP1, complete genome) position: , mismatch: 6, identity: 0.8

tctgctgctccttatacatatccaaatatt	CRISPR spacer
tctgctcctccgtatacatatcccagaact	Protospacer
****** **** *********** *. *.*

3. spacer 1.3|266307|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to CP053317 (Salmonella enterica subsp. salamae serovar 6,8:a:z52 strain 62-3163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

tctgctgctccttatacatatccaaatatt	CRISPR spacer
tcgggcgctccttatacatatccatatcca	Protospacer
** * .****************** ** .

4. spacer 1.7|266571|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 7, identity: 0.767

aggaacgaatccaaaaacagaaccaggact	CRISPR spacer
agataaaaatccaaaaactgaaccaggaaa	Protospacer
**. * .*********** *********

5. spacer 1.7|266571|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to MF893271 (Lysinibacillus phage vB_LspM-01, complete genome) position: , mismatch: 7, identity: 0.767

aggaacgaatccaaaaacagaaccaggact	CRISPR spacer
aagaacgaatcctaaaacagaatcaatatc	Protospacer
*.********** *********.**. *..

6. spacer 1.9|266703|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to MH319731 (Marine virus AG-345-E02 Ga0172268_11 genomic sequence) position: , mismatch: 7, identity: 0.767

attagttactgcatacacaacagaagattt	CRISPR spacer
tactgttactgcatatacaacagacgatat	Protospacer
  . ***********.******** *** *

7. spacer 1.9|266703|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 7, identity: 0.767

attagttactgcatacacaacagaagattt	CRISPR spacer
aaaaaacactgcatacacaaccgaagagtt	Protospacer
*  *. .************** ***** **

8. spacer 1.13|266967|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to JN700520 (Staphylococcus phage StB12, complete genome) position: , mismatch: 7, identity: 0.767

gagtcaataacttgatattgtactcacaac	CRISPR spacer
taatcaaaaacttaatattgtactcagtgc	Protospacer
 *.**** *****.************  .*

9. spacer 1.3|266307|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to NC_012219 (Clostridium botulinum plasmid pC2C203U28 DNA, complete sequence, serotype: type C, strain: (C)-203U28) position: , mismatch: 8, identity: 0.733

tctgctgctccttatacatatccaaatatt	CRISPR spacer
gtaaaagctccttttacatatccaaataat	Protospacer
 . .  ******* ************** *

10. spacer 1.3|266307|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029459 (Clostridium novyi strain 150557 plasmid pCN1, complete sequence) position: , mismatch: 8, identity: 0.733

tctgctgctccttatacatatccaaatatt	CRISPR spacer
gtaaaagctccttttacatatccaaataat	Protospacer
 . .  ******* ************** *

11. spacer 1.6|266505|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to MG592671 (Vibrio phage 2.275.O._10N.286.54.E11, partial genome) position: , mismatch: 8, identity: 0.733

ctcttatagcatatatccccaacaccactc	CRISPR spacer
aacttatagcataaatcaccaacactgata	Protospacer
  *********** *** *******.. *

12. spacer 1.13|266967|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to MK448686 (Streptococcus phage Javan157, complete genome) position: , mismatch: 8, identity: 0.733

gagtcaataacttgatattgtactcacaac	CRISPR spacer
actcgaataacttgatattgtactgactaa	Protospacer
.  . ******************* ** *

13. spacer 1.13|266967|30|NC_010644|CRISPRCasFinder,CRT,PILER-CR matches to MK448951 (Streptococcus phage Javan470, complete genome) position: , mismatch: 8, identity: 0.733

gagtcaataacttgatattgtactcacaac	CRISPR spacer
actcgaataacttgatattgtactgactaa	Protospacer
.  . ******************* ** *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

554338 : 575124

Prochlorococcus_phage(20.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012414676.1\|554338_555361_+	Holliday junction branch migration DNA helicase RuvB	A0A1V0DYC6	Dinoroseobacter_phage	2.0e-06	26.7
WP_012414677.1\|555360_556461_+	SpoIID/LytB domain-containing protein	Q2XU88	Pseudomonas_phage	1.8e-13	28.7
WP_012414678.1\|556491_557517_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_012414679.1\|557513_558680_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.7e-73	39.2
WP_012414680.1\|558826_559474_+	hypothetical protein	NA	NA	NA	NA
WP_012414681.1\|559964_560927_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	2.4e-17	28.5
WP_083759823.1\|560926_561562_-	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	2.5e-15	30.1
WP_012414683.1\|561539_562235_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	8.3e-36	39.7
WP_012414684.1\|562301_562610_-	hypothetical protein	NA	NA	NA	NA
WP_012414685.1\|562726_563605_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	1.2e-44	33.8
WP_052545812.1\|563641_564103_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_052545813.1\|564104_566501_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	2.4e-82	31.0
WP_012414686.1\|566503_567109_+	hypothetical protein	NA	NA	NA	NA
WP_012414687.1\|567110_567857_+	phosphoribosylformylglycinamidine synthase I	A9YX36	Burkholderia_phage	7.3e-14	26.7
WP_012414688.1\|567884_569261_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.0e-46	30.6
WP_012414689.1\|569257_570505_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_012414690.1\|570501_570978_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.3e-24	50.8
WP_012414691.1\|570974_571934_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.9e-67	47.9
WP_012414692.1\|571976_572540_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	3.2e-22	36.0
WP_012414693.1\|572536_574090_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.2e-57	41.5
WP_012414694.1\|574650_575124_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	3.3e-28	42.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010644

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection