CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010680	Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence	2 crisprs	NA	0	5	1	0
NC_010674	Clostridium botulinum B str. Eklund 17B (NRP), complete sequence	3 crisprs	cas3,csa3,DEDDh,DinG,RT,WYL	1	1	10	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010674_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010674_1

592165-592270

Orphan

Consensus_repeat	Method
AAATTAACTAAATGAAAATTAAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010674_1

>merge|NC_010674|1|592165-592270|CRISPRCasFinder
AAATTAACTAAATGAAAATTAAATTTTGAAAAACTGTAAAATTACTATTGAAATTATCGTTTAGTTAATCTATAATATAATAAAATTAACTAAATGAAAATAAAAT

>NC_010674|1|1|592165-592270|CRISPRCasFinder
AAATTAACTAAATGAAAATTAAAT	TTTGAAAAACTGTAAAATTACTATTGAAATTATCGTTTAGTTAATCTATAATATAATA
AAATTAACTAAATGAAAATAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010674.1\|WP_012424742.1\|584445_585342_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_010674.1\|WP_012425469.1\|590239_591397_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NC_010674.1\|WP_012423607.1\|591738_592113_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_010674.1\|WP_012423892.1\|592312_592501_+\|DUF739-family-protein	unknown	unknown	gnl\|CDD\|224393
NC_010674.1\|WP_012423366.1\|592552_592762_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_010674.1\|WP_012425670.1\|583125_584421_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NC_010674.1\|WP_012425763.1\|591380_591554_-\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012423488.1\|592778_593000_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NC_010674.1\|WP_012424262.1\|597873_598350_-\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012423953.1\|588424_588802_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377640
NC_010674.1\|WP_012424263.1\|597232_597433_-\|YvrJ-family-protein	unknown	unknown	gnl\|CDD\|378969
NC_010674.1\|WP_041712129.1\|585355_586675_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NC_010674.1\|WP_079991382.1\|593077_593710_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370614
NC_010674.1\|WP_012424544.1\|587694_588399_+\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012423348.1\|598614_598857_+\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012425312.1\|586891_587512_+\|competence-protein-ComEA	unknown	unknown	gnl\|CDD\|213597
NC_010674.1\|WP_041712131.1\|593782_594070_+\|DnaD-domain-protein	unknown	unknown	gnl\|CDD\|273630
NC_010674.1\|WP_012422699.1\|588818_590171_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NC_010674.1\|WP_012425363.1\|596219_596861_+\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012423001.1\|594252_594555_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_010674.1\|WP_012424742.1\|584445_585342_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.09817e-97
NC_010674.1\|WP_012425469.1\|590239_591397_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.22319e-41
NC_010674.1\|WP_012423607.1\|591738_592113_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.32804e-15
NC_010674.1\|WP_012423892.1\|592312_592501_+\|DUF739-family-protein	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	2.08901e-08
NC_010674.1\|WP_012423366.1\|592552_592762_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.28081e-10
NC_010674.1\|WP_012425670.1\|583125_584421_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.10796e-49
NC_010674.1\|WP_012424263.1\|597232_597433_-\|YvrJ-family-protein	gnl\|CDD\|378969	pfam12841, YvrJ, YvrJ protein family. This family of short proteins are related to B. subtilis YvrJ protein. None of the members of this family have been functionally characterized.	1.01792e-13
NC_010674.1\|WP_012423488.1\|592778_593000_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.3147e-10
NC_010674.1\|WP_012423953.1\|588424_588802_+\|hypothetical-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	4.07449e-06
NC_010674.1\|WP_041712129.1\|585355_586675_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	3.16774e-76
NC_010674.1\|WP_079991382.1\|593077_593710_+\|hypothetical-protein	gnl\|CDD\|370614	pfam09681, Phage_rep_org_N, N-terminal phage replisome organizer (Phage_rep_org_N). This entry represents the N-terminal domain of a small family of phage proteins. The protein contains a region of low-complexity sequence that reflects DNA direct repeats able to function as an origin of phage replication. The region is N-terminal to the low-complexity region.	4.30595e-56
NC_010674.1\|WP_012425312.1\|586891_587512_+\|competence-protein-ComEA	gnl\|CDD\|213597	TIGR01259, ComE_operon_protein_1, comEA protein. This model describes the ComEA protein in bacteria. The com E locus is obligatory for bacterial cell competence - the process of internalizing the exogenous added DNA. Lesions in the loci has been variously described for the appearance of competence-related pheonotypes and impairment of competence, suggesting their intimate functional role in bacterial transformation. [Cellular processes, DNA transformation].	6.60239e-29
NC_010674.1\|WP_041712131.1\|593782_594070_+\|DnaD-domain-protein	gnl\|CDD\|273630	TIGR01446, replication_protein, DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria. [DNA metabolism, DNA replication, recombination, and repair, Mobile and extrachromosomal element functions, Prophage functions].	1.74115e-05
NC_010674.1\|WP_012422699.1\|588818_590171_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	2.92264e-128

>NC_010674.1|WP_012423607.1|591738_592113_-|helix-turn-helix-transcriptional-regulator
MSKFPERLKELRESKDLLSKDFAKIMNVEPATITNWEKGNRFPKDDVLIKIADYFDCSIDYILGRTDNPCAKIYLGKLHDKTVELEIDKDYPYKLTPKDVDNMLKQLDAVGLDIEKLINNSKNK
>NC_010674.1|WP_012425763.1|591380_591554_-|hypothetical-protein
MIWNNVLKITFGNKIVYEKSLYKKSICIQNTKTNFNEKNTSKCKTLNMEVLKHARKC
>NC_010674.1|WP_012425469.1|590239_591397_-|site-specific-integrase
MQGSVRKRGNKWYYYFDVAKSDGKRKKIERAGGNTKKEALEALRKALSEYDNVGTIITESNISVSDYFDYWFNEYVLINCKYSTQVSYKRLIKNHLKPSLGIYQLKKITSSRLQELINLKYRNGFSKNYLGNLYGVLSGAFKYAVYPSNFIKENPMTFVKMPKYNTKLINNPDDLKIITLEDYNNILKRFPYGSNMYIPLQISFNTGLRAAEVMSLTWDCIDFENQTLRVEKILYRNEFKKWVFGSPKTHSSYRTIKIGNTLLSLLKKFHKDQKENKLRYGPFYVKHDYDFVCLKENGELLTTDSLKYLSKVVNYELGIDFKFHSLRHTHATMLLEAGANIKDIQQRLGHSKLATTMDVYSHVTKKMSQDSVRLFEEAIKKLPPS
>NC_010674.1|WP_012422699.1|588818_590171_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MKRGSEVKVKIEKTQFPSTGIGYLEDKPVYVKNTYPGQVVTGRVKKNRKEYAELKLTGVEERADYEIDAICPHFGSCGGCSSQTLSYEKQLQVLEDEIKDLFKEADVTTGEFLGVLGSSEQWEYRNKMEFTFGDEEKGGDLSIGMHMRGKSFGIMTVDHCKIVDEDYRRIIRLTADYFGKQDLPYYRVMKREGYLRHLVIRKAQNTGEILVNLVTTTQIDFDLSEYVELLKSQDYKGTLVSILHTENNSFSDAVIPEKVNVLYGRDYIQEKLLGLDFKISPFSFFQTNTKGAESLYSLVRDFMGSSENKVVFDLYCGTGTIGQIVAPNAKKVVGIELIEEAVEAAKENAKLNGLNNCEFLAGDVAEIIKTVKDKPDIIILDPPRSGVHPKALDYVIKFNAPEIVYVSCNPKTLVTDLKVLIERGYKIIQTQVKDMFPNTPHAETIVKLIK
>NC_010674.1|WP_012423953.1|588424_588802_+|hypothetical-protein
MSKEENNINEKEDTILNDTKAKEETNNETKELLMGETNENNSNEEEKPSLLKKIFASVIDQLVTISISGIALIIFDFIIGFMGYKVSMPIGILIIFYFIVNALYIPLMEKTKLRKSIGRKVINIK
>NC_010674.1|WP_012424544.1|587694_588399_+|hypothetical-protein
MSKKICTIIMTLMITTSLIGCISIDSNKAEDKNNASTATEVKNSDENLQGSWAEDYSLEKTKGYFKDYLSKMEKVTEELGMKYSKEDVVKENDGSTISVNSIYFDNEKPDPNKIESMYFGMKIFGEDLSSGEIELKLSLNFDSAEVIKSGNFDLGNTSFSKYIAAFTGQSSRDYSEINKKIIDGLKSEKAEGIIENSIDGLKEEIRFNKNYIVYKLSTKTYDFKNPNPTLENNN
>NC_010674.1|WP_012425312.1|586891_587512_+|competence-protein-ComEA
MINKANKKIGIIAILVIILVVCLSTYIKSGKDKLVKNDNTSIFVEEENPNINEDEKIEKLKDKNIVVEIKGEVKKPDVYQLNDESIVKDVIEIAGGLTEEADISNINRAQKLKNHELIYIHNKSEVKDNVSYAQNTVTTSNNSGKININCAQLEELKNLNGIGEAKAKRIIEYRENIGAFNSIEDIKNIDGIGEKSFEKLKDQIDV
>NC_010674.1|WP_041712129.1|585355_586675_-|D-alanyl-D-alanine-carboxypeptidase
MKSHLKTLIFFLFIFLVSSINVMAVSSPPEINAEGSVLMDASTGEILFSKNPDKVLEPASTTKVMTAILTLENCDLNEEVVVTEDFTKIDGTTIGLLKGDIVTVKDLLLGLLLESGNDAANALACHVSSSIDKFAVLMNKKATEIGAVNTHFKNPSGLPDPEHLTTAHDLALIMNEAIKNDKFLELSKVMTYEIPIKNDSSRTIWINNKNHMINKNSMYYYQYTLTGKNGYTTKSNHTYTVAAENNGHILVASYLNALDKDKNFEDMRTVFNYGFNNFYFSNIYKKGQEIDSIKLHNGLTVPLIASKDVNCVVPNEDKDKLNTYIKFENKNLNRLSFNEGDVILKGTVYLNDKELCKLDLCAGISRNYSIKEDIYSFIEKNKRNLIIGAIISGVTLLIILTLAIEYNKKKNRKKRLLEITTSIPKIQDDQLKKRRRRQD
>NC_010674.1|WP_012424742.1|584445_585342_+|RluA-family-pseudouridine-synthase
MSILQDKVSNIDGKIKIREYLKEKLDLSTRLIRSASKDQRIYVNNSAVRMNYMIKNGDIIKIDLNRNESQNINPEKIDLDIVYEDEDVLVINKQPFIIVHPTKNFQSGTLANGILYYFQETNQNCIVRLVSRLDMNTSGLIIIAKNQFSHSRLSKDMKEKLQKRYLAIVHGNLEEKEGTIDLPIYKPEGIEYGSMRVVDERGQRSITHYKVIESFEGGDLVECLLETGRTHQIRVHLSHLGHPIYGDELYGVGAEENLIKRQALHAYGLNFASPRSLKELSLRAELPDDMKELLEKIK
>NC_010674.1|WP_012425670.1|583125_584421_+|LCP-family-protein
MGKKRIKRSKRSNKSNKSNKNKTENIKMKNLLEEGILLILALVITFTIVVIGSGFLFLGKINKNDMIEPNKVSMSKPVNILLLGTDIGDPSQPNNKAIKRTDTIMVLNYNPDNKNLQVVSIPRDTLIDVNGRNLKINSAYAIGGEKRVKSEVEKLLNISVNYIAKIDYNAFREFIDAIGGIKMQIERNMIYDDEGQNLHINFKKGEVVKLDGKKAEEFFRWRKNNDGSGFANGDLDRIENQQKFMSKVIEKCTSPMIIFKIPNIIKALGDNIDTNMPPFKVISYGLKFARINSEKIDMKIAQGTPKDINGESFLVFDKNLNKDIITSLSSTGKGTEDVSKSDITIKVFNGTKITGLAATLRDELTKVGYTRVDVGNIPERNESSILTNNENIAGKVKSSIGISKIEKKPDKPEYKDYDVVIILGKDFKKFE
>NC_010674.1|WP_012423892.1|592312_592501_+|DUF739-family-protein
MYSRLKGLMVENSITQQNLAKILDISISTLNFKINGKSDFTIMEAKKVSRILNKSIEEVFNI
>NC_010674.1|WP_012423366.1|592552_592762_+|helix-turn-helix-transcriptional-regulator
MTRVLKTKEFRELKNLTVSKLSYKSGVAIGYITELENGKYKNPSLQIICKLSKALNITPNDLIDKNLWN
>NC_010674.1|WP_012423488.1|592778_593000_+|helix-turn-helix-domain-containing-protein
MEAVLYTVSEAAELLKINRNSVYDLLKHNVIKGLKLGSLKITRNELLKFLEENNGKDLSNLKEIKELNFDKVD
>NC_010674.1|WP_079991382.1|593077_593710_+|hypothetical-protein
MSDVKWIKITTNMFEDEKIRLIDAMPERDTIHYIWIRLLVQAGKNNANGFIFLSESIPYTDEMLSTIFCRPLTSIRLALKTLKDFGMIEVDEDNLIKITNWEKHQNVEGLDKVREQNRIRAKNYRDKKKQLKAADENEDIEDISSSENEEEIVQNLNEIEGNVTKKKRNVMQNENNVTVTEQNKRKSKNKNQKKNKNSIIDREKESNDTN
>NC_010674.1|WP_041712131.1|593782_594070_+|DnaD-domain-protein
MIGDLNLSAIKLAISKHGFNHVKMAIDKALEVNKTDMTYINGILKNWKREGYPSDEEDHKSNNNKSGSELKFDNFEAREYDYDSLEKRLLGWENE
>NC_010674.1|WP_012423001.1|594252_594555_+|hypothetical-protein
MNNLKHTKIGITSFILISIVVINTISSVVCPLKMPYVNPSAIEILGMTMISLISFILGLIAMFQKGSKKILPKITVIISGIFLIPAIAGLVKGIFLRLTI
>NC_010674.1|WP_012425363.1|596219_596861_+|hypothetical-protein
MRIEKIRVIQLKNEYIKTFEGQDKLKNIVENIINCDEKVEYSEDDFRISDIAMEAYYRDLYLDENSKNQKIFQDLFLGLKDFKYTYSRWESEMKIKNPTKEQIAKHIIDTWFYEISPDDTEEIENIDQSQAYVFHEDVDLKCIPADRVKEIILDFDKENIINTANNLKKELNSCGIFVEKFDDDDRKLIDDIMKIFEKSVEENTDILYIINYL
>NC_010674.1|WP_012424263.1|597232_597433_-|YvrJ-family-protein
MEINELVSLIGNVGFPVAVSAYLLIRLEKQLNSLSTSINKLNTIISTKLGVVIDTNKSNDDSNNVA
>NC_010674.1|WP_012424262.1|597873_598350_-|hypothetical-protein
MARKKEFKIEKDDIAYEEEVEEFGFTDYIPTGENSIQLFSIEEDSGPENENINDNNSILKTKEEVNTKMEQKTISINNNISSNPLLFDNRNTPIANGAAPPIDGEAANIKRSYTLRKSTVRKINELKSIHPDIGICVSTIVDIAIDYYHTHIVNNNMD
>NC_010674.1|WP_012423348.1|598614_598857_+|hypothetical-protein
MIKNNIKICSEDSDCFDKKQIALAIRNATLNDCLECSLIEGVIISGCEACSLKFICDGIEDLSDEYIEHTTKVVSTFNFD

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Crispr_ID: NC_010674_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010674_2

973600-973699

Orphan

Consensus_repeat	Method
TTATAATTAATTACAATAAATTATAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010674_2

>merge|NC_010674|2|973600-973699|CRISPRCasFinder
TTACAACGAATTATAATTAATTACAATAAATTATAATAGAACTGTTAAACATAGTCATATCAATGACTTGCAGTTATAATTAATTACAATAAATTATAAT

>NC_010674|2|2|973600-973699|CRISPRCasFinder
TTACAACGAATTATAATTAATTACAAT	AAATTATAATAGAACTGTTAAACATAGTCATATCAATGACTTGCAG
TTATAATTAATTACAATAAATTATAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010674.1\|WP_012422714.1\|969078_969411_+\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012423210.1\|971485_971698_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371241
NC_010674.1\|WP_012423645.1\|974576_974777_+\|UviB-like-protein	unknown	unknown	gnl\|CDD\|378518
NC_010674.1\|WP_012425683.1\|969410_969566_+\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012423806.1\|972925_973327_+\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012422949.1\|981615_983103_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237738
NC_010674.1\|WP_012423841.1\|971175_971331_-\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012422679.1\|975086_975653_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NC_010674.1\|WP_012424434.1\|985979_987719_+\|potassium-transporting-ATPase-subunit-KdpA	unknown	unknown	gnl\|CDD\|377138
NC_010674.1\|WP_012424858.1\|971933_972734_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|119385
NC_010674.1\|WP_012424618.1\|969822_970374_+\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012422674.1\|970541_971189_+\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012423358.1\|975962_977006_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378342
NC_010674.1\|WP_012425609.1\|971711_971888_+\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012423571.1\|979345_980287_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306
NC_010674.1\|WP_012425498.1\|977024_978062_+\|hypothetical-protein	unknown	unknown	unknown
NC_010674.1\|WP_012423673.1\|980448_981468_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NC_010674.1\|WP_012425120.1\|983102_985463_+\|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NC_010674.1\|WP_012424973.1\|978214_979324_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NC_010674.1\|WP_012423541.1\|967624_969076_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117

Protein	Function_ID	Function_description	E-value
NC_010674.1\|WP_012423645.1\|974576_974777_+\|UviB-like-protein	gnl\|CDD\|378518	pfam10960, Holin_BhlA, BhlA holin family. The Phage_holin_BhlA family is a family of holin-like proteins from both bacteriophages and bacterial chromosomes. In bacteriophage, holins are small membrane proteins that accumulate and oligomerize to form non-specific lesions in the cytoplasmic membrane allowing the release of the second protein, endolysins, to access the peptidoglycan. Most holins share common structural features: two or three transmembrane domains separated by a beta-turn, a short hydrophilic N-terminus, a highly charged C-terminus and a dual translational start motif. The BhlA holin of Bacillus is found to be toxic to the host cell where the site of action of is on the cell membrane and causes bacterial death by cell membrane disruption.	1.18287e-12
NC_010674.1\|WP_012422949.1\|981615_983103_+\|4-alpha-glucanotransferase	gnl\|CDD\|237738	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.	0
NC_010674.1\|WP_012423210.1\|971485_971698_+\|hypothetical-protein	gnl\|CDD\|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	4.61764e-05
NC_010674.1\|WP_012423541.1\|967624_969076_+\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.000997337
NC_010674.1\|WP_012422679.1\|975086_975653_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.00848e-19
NC_010674.1\|WP_012424434.1\|985979_987719_+\|potassium-transporting-ATPase-subunit-KdpA	gnl\|CDD\|377138	pfam03814, KdpA, Potassium-transporting ATPase A subunit.	0
NC_010674.1\|WP_012423571.1\|979345_980287_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	6.15871e-16
NC_010674.1\|WP_012423358.1\|975962_977006_+\|hypothetical-protein	gnl\|CDD\|378342	pfam09992, NAGPA, Phosphodiester glycosidase. This is a family conserved from bacteria to humans. The structure of a member from Bacteroides has been crystallized and modelled onto the luminal region of the human member of the family, the transmembrane glycoprotein N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase. There is some conservation of potentially functional residues, implying that in the bacterial members this family acts in some way as a phosphodiester glycosidase. The human protein is also present, so the eukaryotic members are likely to be catalyzing the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides.	1.53546e-48
NC_010674.1\|WP_012424858.1\|971933_972734_+\|glycoside-hydrolase	gnl\|CDD\|119385	cd06525, GH25_Lyc-like, Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.	7.68663e-92
NC_010674.1\|WP_012423673.1\|980448_981468_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.42055e-101
NC_010674.1\|WP_012424973.1\|978214_979324_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
NC_010674.1\|WP_012425120.1\|983102_985463_+\|glycogen/starch/alpha-glucan-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0

>NC_010674.1|WP_012423806.1|972925_973327_+|hypothetical-protein
MKKIISILIGMLMLLSLVGCGFSEDFKQGYDSETKYVGININKIEELPVKNGNGEEIGKRGTVIYNADKITDESLTNFYNDKIKDSGYNYYTLINEKDKKQGIVSPGCIKILSHGEIDDTGSLIKADKDITID
>NC_010674.1|WP_012424858.1|971933_972734_+|glycoside-hydrolase
MNGIDVSNHNGSIDFNKVKEDNIEVVYIKATEGTTYKDPYLNQHYSGAKKAGLKTGFYHFLVGSSEPETQAENFYNNIKDKENDLKPCLDIETNNFNVMDYALRFIKKFECLCELELCIYTSPYFANENLDSRLAKYQCWIAHYGVETPMETNVWRDNYAGHQFTETGRINGINTNVDINTFTKDIFTNNKSQGYVVTQYLPNGYRGDNSFEGIDLEYVLSYFKDVRCYVRKDSKGVWIETQTLSMGKCLELKKVLGSWFYSIEIK
>NC_010674.1|WP_012425609.1|971711_971888_+|hypothetical-protein
MDRLLNKVTSARWLIAVIMTIVFAVLAFTNRLSTEFITIYTMVIAFYFSKEREKEIKE
>NC_010674.1|WP_012423210.1|971485_971698_+|hypothetical-protein
MSEQDTIQEIKERLVRIEILLEKNTENWNEKIKVANYRIADLEDTIKWISRTAIGGLLTGLLGILFAFIK
>NC_010674.1|WP_012423841.1|971175_971331_-|hypothetical-protein
MTEKRIIKNTPNSSSSKPQASTNPTSVRRVNVRDDSGTKDNSRLESLFKNR
>NC_010674.1|WP_012422674.1|970541_971189_+|hypothetical-protein
MEKFIAMLLMIIPGFFVRKIKEEVKDIKEIKSDTEKTVISLIYSIPVLILNLIVLVFLFKFSGIDQLVLMFEDLQFIIEYALLSIISTAIISAIMIVIESKYKLNFFNWIRRKMDEPEKTSSITPWQDFFKSDGEMPIKIIKGEKIVAQGFVKHWDLDGKSEKDIVLEYADQMIENTQCFTRIRKQYIDYKNDLTILEYFFDEEKLQNNCESNDS
>NC_010674.1|WP_012424618.1|969822_970374_+|hypothetical-protein
MTIEEIKQQLDFLSDKIDLINVNLQFNITTFLAILSIALVIAGTSSVILAKYLFNKRFDIEIKKIDDKIKQMLIDEPPILSVTNTIISLTLNIEQEDNGKTIYRYKGLLILGKNVTKQSFISSEFYHFIPPGIRKEPLENYKLDIKNKVHLEIIIDCNQEMPKWWEFIEVNIAWKNPIYETFK
>NC_010674.1|WP_012425683.1|969410_969566_+|hypothetical-protein
MDFWKMCFDLKVIDSDFLRQAVITDKNKFGDITIEQFKEITGEDFIKVVSQ
>NC_010674.1|WP_012422714.1|969078_969411_+|hypothetical-protein
MNMAEKELFLNVILKEEDLQYCYISDDGKMFPPHYNTDGMIDVIGEDVYKNYLNNKNNPSKKEPTKEEVLLKEIANLKVDNMKKDVVVTSTLKSLAELKVEMMELKGGNK
>NC_010674.1|WP_012423541.1|967624_969076_+|hypothetical-protein
MIQELQTGILDINNRYGIDFTCKQLDDVILKIIVYDKSVPADLGNYTCRLKAFKTDQVPLIQNTNITIVNNVAEIKASKQLTTTLGIVKAELQFINKSTLEKKSTFYINIEVVASVLDVDGTVSTPTCTILEEIDHKLDQIENIGEVLDEAKEVRDTLTNTTIPGATSINSTLESNIKNASNKIVEVESSITNASKKTEEVEASTKNANSSKEELDLSKTNADTTKENLDTANVQAEKNIEELNKLGDVTELAKNVQTNTTDITNLKEDVENNTSQLKDVENDIKNLDDIKINKKVKYYTSEETTKGANPNNALEGCFVIAHELNPVQNGFCYYEQFFYGDISETANRIQYVTTYNGDLRRFIRRYFNGNWETKELATTEIAEIGLLNGWKKGYGELQITKTGSICYLNFQGTVGVSSVGTTIFNIPERFRPKYQQVFYIPQRDGKPFYGVAIDNNGNVDVSGVTSLPTQGTKTDFYMIWRID
>NC_010674.1|WP_012423645.1|974576_974777_+|UviB-like-protein
MDEIMKMALSQGLGYALFVFLLLYVLKTTGERENKYQTLLDALAEKFNVVEDIKEDVKEIKNKIES
>NC_010674.1|WP_012422679.1|975086_975653_-|GNAT-family-N-acetyltransferase
MNDINFKTLINKHIPVNGSQIFIDKIDLNKLLYIYNWSSKEVQEKMTCRPIINRNRDESIKLYNSLLNSDTVYIFGLYNLNNKELLGKITLFDYNCRNKSLEIGYYLLPKFRKKGYMNEAIKIILNLLFLKTDINKVYAQTASFNNDSNALLKLNNFKLDGILREHHELNEVFYDDYIYSILKNEFIL
>NC_010674.1|WP_012423358.1|975962_977006_+|hypothetical-protein
MNKKVKKKPTRKKKRKENKKKKSLSIFMGLIYVITFLVITTPLVLIYGPYEKTKKVLISTVIATRHSYLVYDFIPQKTLDSILGKSEIEEEAVEANTSIDLNKIDVKCDSGNKVTKYDIHTERYDGYMLEIENPHKVKATMTKHLGKLGQKTSEMAEEHNAIAAINGGTFLDKSSDGVTYAGTGGQPGGFVISNGKVIYPTSGYDEHSFENVIAFTKKGQLIVGDHTLAELKKLDVQEAMCFRKPNIIINGIKQIKDRFEDGVNPRTAVGQKEDGTVLFLVLDGRKLSKPGASLYDVQEIMKNRGAINAGMLDGGYSTTMYYKGDVINSPNAWDGERTVATAFYVEQ
>NC_010674.1|WP_012425498.1|977024_978062_+|hypothetical-protein
MKVLNKLLIFTFVAFIIQQGVFFYIENIYLSSNMDIKIEKSDDSEVSKNEQKEVELKEYVDDLKVSSNGRYVAGLQNGRLKVLDSDENKYKDIKNNVNSNIVFYKWVTNSDRIIAIQKIKEKGRSYFEPVAFNAKNGEQIELADFDLNKLRVRVENSEDKVEDIPFSIGTHSLYIKIKKSNEKSDLYYANTMNQLEKKRSNKEIGNIVIPTTGANAIMEMGTQVTILDKPDNLLIPNTKNPKLLGTDINDNVYFASEVNNKVVKIYYAISSDNYKDWKEFKLDNPVNKEDILVDYSGKVYINDNEKKTAVELTSKKTIKYKGELIQTYSKGVISKNGNKLIKNSI
>NC_010674.1|WP_012424973.1|978214_979324_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MADLSLRHIYKIYSGDVTAVNDFNLEIEDKEFIVFVGPSGCGKSTTLRMIAGLEEISKGELYIGGKLVNDVEPKERDIAMVFQNYALYPHMSVYDNMAFALKLRKVPKEEIDEKVTEAARVLGIEHLLTRKPKALSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRTEISKLYNKLQTTFIYVTHDQVEAMTMGTRIVVMKDGIIQQVDTPQNIYNNPVNIFVAGFIGSPQMNFIDGKIIEKEGKLYCSFEENNILLPEQQAKELKTKGYVNKEVTFGIRPEHLDDNMEVVKENPSSIINGKVEVVELMGAESYIYFVASNNNMTARVNGTTNVKTGDSIKLYVESEKIHVFDKENELRII
>NC_010674.1|WP_012423571.1|979345_980287_+|PucR-family-transcriptional-regulator
MYGLVEYLNELYKKCEIPFELCIDNKVAFKTNPFLYTDKEIIEARFNINNKICILRTYSNFKDSLKLIKFCIENRCKDEHDVRENTIISLLKNEYVSSDKLNDIMFELNEVYLISINLEEKISETIDILKTIYIDTEVSILEYNEYIILLGTFEDIEDHISSITETIHNNLYKRCYISYYEVKDYNNISSLYKEGIYKINLAKKYNISNRIFNEKSLLFESIVDSLSEEKKVKILSKFNDGFNKLDDDTINTIEVFFNCDLNLSESAKNLYVHRNTLIYRLDKIKKCTSYDIRNFNEAILFKIAFFVWKESKV
>NC_010674.1|WP_012423673.1|980448_981468_+|LacI-family-transcriptional-regulator
MNIGDIARLAGVGVSTVSRVINNHPDVKESTRERIWEIIKQNNYIPNNSARILKQNNTKNIGVLVKGVFNPFFSQMINIIGNIIDKSGYTMILEQNDYNFYQDVENLMGFIKEKKLQGVICLGGNFINIKEDSFSDIETPIVLTSVNTISKKGKKHYSSIGIDNIKASYDTTKYLIEKGHKKIALILGDENDLGISWWRLKGYRNALKENNIQIDDELELIGDYSCEKAYKETINLIKNRKDVSAIFALSDIMATGVAKAVIDSGLKIGDDISIIGFDGMDASKYYNPGLTTVNQPKRLMAETSISLLFSLINGVEENKQILLDTKLIERESCKDLLKK
>NC_010674.1|WP_012422949.1|981615_983103_+|4-alpha-glucanotransferase
MRRSSGIIMHIASLPGEFGIGTFGKEAYEFADFLKESHQKYWQILPIGPTSYGDSPYQSFSAFAGNPYFIDFNLLKKDGLLKSKDYSNLNFGKDKEDIDYGLIFVEKMKVLRKAYERFKLNLPTDLKEFEEENQWLNDYSLYMALKSKFELKSWQKWDIDIKLRKKEVLNKYKEELKDEINLWKFIQYKFFEQWTNLKKYVNDLDIEIIGDIPIYVAEDSADIWANPKAFLLDEETLVPLKVSGCPPDNFAVTGQLWGNPIYNWDYIDKTNYKWWIDRMKQSSKLYDVIRIDHFRGFESYWSIPYGDPTAENGEWVKGPGMKLFNAIKKELGDIKIIAEDLGFLTDEVVKFREESGFPGMRVLQFAFVGDAANRDLPHNYEENCIAYTGTHDNNTFRGWLEKTGTEEEIEASIKYLGLNKEEGYNWGFIRGVWSSKAYLSIALIQDFLNLGNESRINVPSTLGQNWRWRAKEDVFTDELAEKIYEITKMYGRCEE
>NC_010674.1|WP_012425120.1|983102_985463_+|glycogen/starch/alpha-glucan-phosphorylase
MNKENIKQGINRYLKVKYGIKLEDAKEYQIFNALSLAILEEIVDDWNDTTKAYNEKRSANYFSAEYLMGRALGNNLINLGLYDEVKDVLKELNIDINKVEEIEEDAGLGNGGLGRLAACFMESAATIDMPLNGYGIRYNNGLFKQNIDEGFQTESEDSWLKYGDPWSIRKDNEAQVVEFEDMKVKAIPYDTPIIGYGTKNINTLRLWKCEPIKEFDFYLFNEQKYDESVELKNRAEDISRVLYPNDSNDEGKILRLRQQYFLVSASLKDIIRKHIEKFGTDFEKISEYNFVQLNDTHPTLAIPEFIRILVDEEGINFNKALRYAKKFFGYTNHTILAEALEKWDVELIEKLFPRILEITEKIDKELIKELKAKKYTEKEIKKLRIIGDDQMRMANLAIFVSKAVNGVAQLHTDILKDKELNDWYKLYPAKFQNKTNGITPRRWLRLCNQELSEFITKLLGTEDWVKNLSLLKDLKKFENDDKVLEELMNIKLEKKKQLAEYIKDEEGIELDPNSIFDIQIKRLHEYKRQLLNAMYILDLYYRIKENPSLDIPKVSFIFGAKAFPGYVRAKAIVKFINEIAELVNNDKDVNGKIKVVFVHNYRVSYAQRLFPAADLSKQISTAGKEASGTGNMKFMLNATPTFGTYDGANIEIVQESGEENNYIFGLKVEDIDDIKEEYNPMTYYKKNKSIKRVLDTLIDGTFNDGNTEDFEDLYNSLLEEGDQYYLLADFESFKEAQDKVFKDYKDTKKWAKKCFANLYSAGIFSSDRTIKQYCDEIWDIKETPIK
>NC_010674.1|WP_012424434.1|985979_987719_+|potassium-transporting-ATPase-subunit-KdpA
MMNLVLQYGLYILILVVLAIPLGNYIGKIMNGEKVFLSKILTPCENFIYKILHIDKDEDMSWKKYSFSVLAFSIISLIVLFLLHIFQGFLPLNPEKVSGTSWDLAFNNAISFVTNTNWQGYSGESSLSYFTQMMGLTVQNFVSAAVGISVLFALIRGFIRVKQKGIGNFWIDITRTVLYILIPLSIVVSLALVSQGVVQNFKQYETVSLLEPITLEDGTLVTEEVVPLGPAASQIAIKQLGTNGGGFMGTNSAHPIENPTILSNLFEMISLLLIPVALCFTFGRNIKDRRQGIAIFVAMGIMLVVAMAIVGVNEQIGTPQMALNGQVDLSTINQAGGNMEGKEARFGIATSSTWATFTTAASNGSVNSMHDSYTPIGGMIPMLLMQLGEVVFGGVGCGLYGMIGFAILAVFMAGLMVGRTPEYLGKKIEPFEMKMAVLVCLATPIAILIGSGIASILPETVNSLNNSGAHGFSEVLYAYTSAGGNNGSAFAGFAANTPFINISIGLSMIFARFVPMMGTLAIAGSMVKKKKVAESVGTLPTHNAMFIGLLIFVVLLIGALSFFPALALGPIAEFFQMLG

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Crispr_ID: NC_010674_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010674_3

2143426-2144430

Orphan

II-B

Consensus_repeat	Method
ATTTAAATACATCTCATGTTAAGGTTAATC	CRISPRCasFinder
ATTTAAATACATCTCATGTTAAGGTTAATC	CRT
ATTTAAATACATCTCATGTTAAGGTTAATC	PILER-CR

15 spacers

The CRISPR arrays of NC_010674_3

>merge|NC_010674|3|2143426-2144430|CRISPRCasFinder,CRT,PILER-CR
AATTAAATACATCTCATGTTAAGGTTAAACAAGTAAAAGGAGATTTTAATACTATTAATTTAATATTTAAATACATCTCATGTTAAGGTTAATCATTTTCATAATGTTTTAATGTAGTAATTACTATTTGATTTAAATACATCTCATGTTAAGGTTAATCGATGATAGTGGTATTGGATATACAACAATAATCGCATTTAAATACATCTCATGTTAAGGTTAATCTTACATTTCCTGTCCAACTTATGGTATTTTCACCATTTAAATACATCTCATGTTAAGGTTAATCTTTCCTCAGTTCTATTTTTAGTAGTTGTATTTTGATTTAAATACATCTCATGTTAAGGTTAATCAGAAATATCAAAGACTATGTTATCTTATAATATTTCATTTAAATACATCTCATGTTAAGGTTAATCAGATACTGTACATTGCTACAACAAAAATATTGATATATTTAAATACATCTCATGTTAAGGTTAATCATTACAATTAAACTTTGATGCTCTATACCCATTTCAATTTAAATACATCTCATGTTAAGGTTAATCGAACAGGATTGTATATTTTCGTTGCATAATATACAATTTAAATACATCTCATGTTAAGGTTAATCCAGATGTGAGAGTTGAAAGGCTACAGGATATTGAATTTAAATACATCTCATGTTAAGGTTAATCCAGGCGATAATATTAAAGAAAAAGTAAGTATAACATTTAAATACATCTCATGTTAAGGTTAATCTCATCAATTTTCATACCATCAAATTGATTATTTGCATTTAAATACATCTCATGTTAAGGTTAATCGACGGTAAGCCTTTTTTTGGTGTTGCAATAAATAAATTTAAATACATCTCATGTTAAGGTTAATCAACTGGGGAGGAATTAGACCTACAGTTGTAATTTGATTTAAATACATCTCATGTTAAGGTTAATCATTTTTTTAATTCGTATGATATTATCACATAAATTAATTTAAATACATCTCATGTTAAGGTTAATC

>NC_010674|3|3|2143426-2144430|CRISPRCasFinder
AATTAAATACATCTCATGTTAAGGTTAAAC	AAGTAAAAGGAGATTTTAATACTATTAATTTAAT
ATTTAAATACATCTCATGTTAAGGTTAATC	ATTTTCATAATGTTTTAATGTAGTAATTACTATTTG
ATTTAAATACATCTCATGTTAAGGTTAATC	GATGATAGTGGTATTGGATATACAACAATAATCGC
ATTTAAATACATCTCATGTTAAGGTTAATC	TTACATTTCCTGTCCAACTTATGGTATTTTCACC
ATTTAAATACATCTCATGTTAAGGTTAATC	TTTCCTCAGTTCTATTTTTAGTAGTTGTATTTTG
ATTTAAATACATCTCATGTTAAGGTTAATC	AGAAATATCAAAGACTATGTTATCTTATAATATTTC
ATTTAAATACATCTCATGTTAAGGTTAATC	AGATACTGTACATTGCTACAACAAAAATATTGATAT
ATTTAAATACATCTCATGTTAAGGTTAATC	ATTACAATTAAACTTTGATGCTCTATACCCATTTCA
ATTTAAATACATCTCATGTTAAGGTTAATC	GAACAGGATTGTATATTTTCGTTGCATAATATACA
ATTTAAATACATCTCATGTTAAGGTTAATC	CAGATGTGAGAGTTGAAAGGCTACAGGATATTGA
ATTTAAATACATCTCATGTTAAGGTTAATC	CAGGCGATAATATTAAAGAAAAAGTAAGTATAAC
ATTTAAATACATCTCATGTTAAGGTTAATC	TCATCAATTTTCATACCATCAAATTGATTATTTGC
ATTTAAATACATCTCATGTTAAGGTTAATC	GACGGTAAGCCTTTTTTTGGTGTTGCAATAAATAA
ATTTAAATACATCTCATGTTAAGGTTAATC	AACTGGGGAGGAATTAGACCTACAGTTGTAATTTG
ATTTAAATACATCTCATGTTAAGGTTAATC	ATTTTTTTAATTCGTATGATATTATCACATAAATTA
ATTTAAATACATCTCATGTTAAGGTTAATC

>NC_010674|3|1|2143426-2144430|CRT
AATTAAATACATCTCATGTTAAGGTTAAAC	AAGTAAAAGGAGATTTTAATACTATTAATTTAAT
ATTTAAATACATCTCATGTTAAGGTTAATC	ATTTTCATAATGTTTTAATGTAGTAATTACTATTTG
ATTTAAATACATCTCATGTTAAGGTTAATC	GATGATAGTGGTATTGGATATACAACAATAATCGC
ATTTAAATACATCTCATGTTAAGGTTAATC	TTACATTTCCTGTCCAACTTATGGTATTTTCACC
ATTTAAATACATCTCATGTTAAGGTTAATC	TTTCCTCAGTTCTATTTTTAGTAGTTGTATTTTG
ATTTAAATACATCTCATGTTAAGGTTAATC	AGAAATATCAAAGACTATGTTATCTTATAATATTTC
ATTTAAATACATCTCATGTTAAGGTTAATC	AGATACTGTACATTGCTACAACAAAAATATTGATAT
ATTTAAATACATCTCATGTTAAGGTTAATC	ATTACAATTAAACTTTGATGCTCTATACCCATTTCA
ATTTAAATACATCTCATGTTAAGGTTAATC	GAACAGGATTGTATATTTTCGTTGCATAATATACA
ATTTAAATACATCTCATGTTAAGGTTAATC	CAGATGTGAGAGTTGAAAGGCTACAGGATATTGA
ATTTAAATACATCTCATGTTAAGGTTAATC	CAGGCGATAATATTAAAGAAAAAGTAAGTATAAC
ATTTAAATACATCTCATGTTAAGGTTAATC	TCATCAATTTTCATACCATCAAATTGATTATTTGC
ATTTAAATACATCTCATGTTAAGGTTAATC	GACGGTAAGCCTTTTTTTGGTGTTGCAATAAATAA
ATTTAAATACATCTCATGTTAAGGTTAATC	AACTGGGGAGGAATTAGACCTACAGTTGTAATTTG
ATTTAAATACATCTCATGTTAAGGTTAATC	ATTTTTTTAATTCGTATGATATTATCACATAAATTA
ATTTAAATACATCTCATGTTAAGGTTAATC

>NC_010674|3|1|2143490-2144430|PILER-CR
ATTTAAATACATCTCATGTTAAGGTTAATC	ATTTTCATAATGTTTTAATGTAGTAATTACTATTTG
ATTTAAATACATCTCATGTTAAGGTTAATC	GATGATAGTGGTATTGGATATACAACAATAATCGC
ATTTAAATACATCTCATGTTAAGGTTAATC	TTACATTTCCTGTCCAACTTATGGTATTTTCACC
ATTTAAATACATCTCATGTTAAGGTTAATC	TTTCCTCAGTTCTATTTTTAGTAGTTGTATTTTG
ATTTAAATACATCTCATGTTAAGGTTAATC	AGAAATATCAAAGACTATGTTATCTTATAATATTTC
ATTTAAATACATCTCATGTTAAGGTTAATC	AGATACTGTACATTGCTACAACAAAAATATTGATAT
ATTTAAATACATCTCATGTTAAGGTTAATC	ATTACAATTAAACTTTGATGCTCTATACCCATTTCA
ATTTAAATACATCTCATGTTAAGGTTAATC	GAACAGGATTGTATATTTTCGTTGCATAATATACA
ATTTAAATACATCTCATGTTAAGGTTAATC	CAGATGTGAGAGTTGAAAGGCTACAGGATATTGA
ATTTAAATACATCTCATGTTAAGGTTAATC	CAGGCGATAATATTAAAGAAAAAGTAAGTATAAC
ATTTAAATACATCTCATGTTAAGGTTAATC	TCATCAATTTTCATACCATCAAATTGATTATTTGC
ATTTAAATACATCTCATGTTAAGGTTAATC	GACGGTAAGCCTTTTTTTGGTGTTGCAATAAATAA
ATTTAAATACATCTCATGTTAAGGTTAATC	AACTGGGGAGGAATTAGACCTACAGTTGTAATTTG
ATTTAAATACATCTCATGTTAAGGTTAATC	ATTTTTTTAATTCGTATGATATTATCACATAAATTA
ATTTAAATACATCTCATGTTAAGGTTAATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010674.1\|WP_012424189.1\|2148333_2149062_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368639
NC_010674.1\|WP_012423930.1\|2152632_2154234_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|200472
NC_010674.1\|WP_012424468.1\|2142000_2143275_-\|peptidase-S41	unknown	unknown	gnl\|CDD\|143479
NC_010674.1\|WP_012425832.1\|2150618_2151509_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NC_010674.1\|WP_012424962.1\|2156309_2157398_-\|glycosidase	unknown	unknown	gnl\|CDD\|350124
NC_010674.1\|WP_012422806.1\|2138804_2139038_-\|DUF2249-domain-containing-protein	unknown	unknown	gnl\|CDD\|226759
NC_010674.1\|WP_012425258.1\|2135302_2136073_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|99781
NC_010674.1\|WP_012422668.1\|2149302_2150514_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340893
NC_010674.1\|WP_012425427.1\|2141320_2141863_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237847
NC_010674.1\|WP_012423012.1\|2154248_2155166_-\|DUF1861-family-protein	unknown	unknown	gnl\|CDD\|378102
NC_010674.1\|WP_012423143.1\|2146233_2147025_-\|esterase	unknown	unknown	gnl\|CDD\|225256
NC_010674.1\|WP_012424904.1\|2136565_2137798_+\|FprA-family-A-type-flavoprotein	unknown	unknown	gnl\|CDD\|223503
NC_010674.1\|WP_079991389.1\|2138070_2138403_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372705
NC_010674.1\|WP_012423745.1\|2133282_2133699_-\|flavodoxin	unknown	unknown	gnl\|CDD\|235508
NC_010674.1\|WP_012424131.1\|2138445_2138607_-\|rubredoxin	unknown	unknown	gnl\|CDD\|366011
NC_010674.1\|WP_012425568.1\|2147267_2148137_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NC_010674.1\|WP_012424859.1\|2151519_2152455_-\|mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NC_010674.1\|WP_012425425.1\|2139400_2141104_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NC_010674.1\|WP_012425824.1\|2155179_2156241_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380629
NC_010674.1\|WP_012422907.1\|2133790_2135251_-\|NADP-dependent-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|143401

Protein	Function_ID	Function_description	E-value
NC_010674.1\|WP_012424189.1\|2148333_2149062_+\|hypothetical-protein	gnl\|CDD\|368639	pfam05857, TraX, TraX protein. This family consists of several bacterial TraX proteins. TraX is responsible for the amino-terminal acetylation of F-pilin subunits.	1.19385e-18
NC_010674.1\|WP_012423930.1\|2152632_2154234_-\|alpha-glucosidase	gnl\|CDD\|200472	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NC_010674.1\|WP_012424468.1\|2142000_2143275_-\|peptidase-S41	gnl\|CDD\|143479	cd07563, Peptidase_S41_IRBP, Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors and facilitates its delivery to the RPE. Conversely, IRBP can promote the release of 11-cis-retinal from the RPE, prevent its isomerization in the subretinal space, and transfer it to photoreceptors. In vivo evidence implicates IRBP as a retinoid transporter in the visual cycle, suggesting a critical role for IRBP in cone function essential for human vision. IRBP is a dominant autoimmune antigen in the eye; IRBP proteolysis analysis has proven a useful biomarker for autoimmune uveitis (AU) disorders, a major cause of blindness. This family also includes a chlamydia-secreted protein, designated chlamydia protease-like activity factor (CPAF), known to degrade host proteins, enabling Chlamydia to evade host defenses and replicate.	4.78372e-11
NC_010674.1\|WP_012425832.1\|2150618_2151509_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.48951e-64
NC_010674.1\|WP_012424962.1\|2156309_2157398_-\|glycosidase	gnl\|CDD\|350124	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase. This subfamily contains the glycosyl hydrolase family 130 (GH130), as classified by the carbohydrate-active enzymes database (CAZY), enzymes that are phosphorylases and hydrolases for beta-mannosides, and includes Listeria innocua beta-1,2-mannobiose phosphorylase (Lin0857). hey possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Structure of Lin0857 shows beta-1,2-mannotriose bound in a U-shape, interacting with a phosphate analog at both ends. Lin0857 has a unique dimer structure connected by a loop, with a significant open-close loop displacement observed for substrate entry. A long loop, which is exclusively present in Lin0857, covers the active site to limit the pocket size.	4.68222e-151
NC_010674.1\|WP_012422806.1\|2138804_2139038_-\|DUF2249-domain-containing-protein	gnl\|CDD\|226759	COG4309, COG4309, Uncharacterized conserved protein [Function unknown].	7.31377e-32
NC_010674.1\|WP_012425258.1\|2135302_2136073_-\|oxidoreductase	gnl\|CDD\|99781	cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.	2.16401e-107
NC_010674.1\|WP_012422668.1\|2149302_2150514_-\|MFS-transporter	gnl\|CDD\|340893	cd17335, MFS_MFSD6, Major facilitator superfamily domain-containing protein 6. Human Major facilitator superfamily domain-containing protein 6 (MFSD6) is also called macrophage MHC class I receptor 2 homolog (MMR2). It has been postulated as a possible receptor for human leukocyte antigen (HLA)-B62. MFSD6 is conserved through evolution and appeared before bilateral animals. It belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.02483e-17
NC_010674.1\|WP_012425427.1\|2141320_2141863_-\|hypothetical-protein	gnl\|CDD\|237847	PRK14879, PRK14879, Kae1-associated kinase Bud32.	1.57292e-05
NC_010674.1\|WP_012423012.1\|2154248_2155166_-\|DUF1861-family-protein	gnl\|CDD\|378102	pfam08950, DUF1861, Protein of unknown function (DUF1861). This hypothetical protein, found in bacteria and in the eukaryote Leishmania, has no known function.	1.45237e-177
NC_010674.1\|WP_012423143.1\|2146233_2147025_-\|esterase	gnl\|CDD\|225256	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism].	1.65251e-26
NC_010674.1\|WP_012424904.1\|2136565_2137798_+\|FprA-family-A-type-flavoprotein	gnl\|CDD\|223503	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion].	1.60148e-109
NC_010674.1\|WP_079991389.1\|2138070_2138403_+\|hypothetical-protein	gnl\|CDD\|372705	pfam13751, DDE_Tnp_1_6, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	2.79077e-10
NC_010674.1\|WP_012423745.1\|2133282_2133699_-\|flavodoxin	gnl\|CDD\|235508	PRK05568, PRK05568, flavodoxin; Provisional.	5.54302e-56
NC_010674.1\|WP_012424131.1\|2138445_2138607_-\|rubredoxin	gnl\|CDD\|366011	pfam00301, Rubredoxin, Rubredoxin.	1.17683e-21
NC_010674.1\|WP_012425568.1\|2147267_2148137_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.73616e-30
NC_010674.1\|WP_012424859.1\|2151519_2152455_-\|mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	8.02203e-80
NC_010674.1\|WP_012425425.1\|2139400_2141104_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NC_010674.1\|WP_012425824.1\|2155179_2156241_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|380629	cd19974, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	7.71723e-96
NC_010674.1\|WP_012422907.1\|2133790_2135251_-\|NADP-dependent-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|143401	cd07082, ALDH_F11_NP-GAPDH, NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.	0

>NC_010674.1|WP_012424468.1|2142000_2143275_-|peptidase-S41
MKFNKKGKVITTILLVIAVVIGIFAFKIFHRVTNSPMIKSEDRNEKFIADIEFLKKELPKKHKNLFFSKSEEEFNDEIDSLINNVSRYSDEEINGELAKIIVSINDSHTNVDIMGSLAYPLNFFQFGNDIYLVDGDSEYKGYWGKKLISINGHSINELKEKLEPFISKDNEAISKNQFSVLLKCVEVLKLSGIVKEDNATFTFEGSPNDDVMIKPVTMEEYMNITTLSSDEEFKNRFPISKQNSNDNYWFKYIEEENTMYVKYNSCMEMKEYSFSNFTKDVFNVIDTKNATKLVVDLRDNGGGNSRVFETFLDEIKKRENINKEGNLYAIIGRRTFSSAVLNAMSLRNETNATLIGEPTGGKPNHFGEVKTIHLSNVNIDVNYSSNYFKTSDEDTDSIYPNVEINLKAESFFNGQDDFLEYVIR
>NC_010674.1|WP_012425427.1|2141320_2141863_-|hypothetical-protein
MDFIKVNERKFTILKLLGKGKGGYSYLVTDDKSNKYVVKQIHHEPCEYYQFGNKIESELNDYNKLYKIGLKIPKMLDVDIENERILKEFIDGDTIYNMILKDNMNENYIKQIKNMCKKLYPVNINIDYFPTNFIVQDELIWYIDYECNEYMEKWDFENWGIKYWSKTPEFIEYVNNNKGQ
>NC_010674.1|WP_012425425.1|2139400_2141104_-|hydroxylamine-reductase
MSMFCYQCQETAGCKGCTKVGVCGKDEHVAKAQDLLIYVTKGLAIVSNEGRKVGVIDSKVDKYITENLFTTITNANFDRDSILDRVRETLKLREILKAKVIKAGGKVGEVKVSGGFFKKIFGMQTTEMIMPDAATWTADNIIEFDVKAEKVGVLATENEDIRSLRELITYGLKGLSAYMKHAMNLKYNNEEVHGFMARALAATLDDSLTVDDLVALALEAGKFGVDGMALLDKANTESYGHPEITTVDIGVRTNPGILISGHDLKDLEMLLKQTEGTGVDVYTHGEMLAGQYYPKFKKYKHFAGNYGNAWWKQKEEFEKFNGPILMTTNCIVIPKESYKNRLFTTGATGMPGCPHIEADSKGIKDFSKVIEMAKKCNAPTEIEKGQIVGGFAHNQVLALADKVVDAVKTGAIKRFFVMAGCDGRAKSRNYYTDFAEKLPKDTVILTAGCAKYKYNKLNLGDIGGIPRVLDAGQCNDSYSLVVIALKLQEVFSLDDVNKLPISYNIAWYEQKAVIVLLSLLHLGVKNIHLGPTLPAFLSPNVAKVLIDNFGIGGITNVEDDMKMFMEA
>NC_010674.1|WP_012422806.1|2138804_2139038_-|DUF2249-domain-containing-protein
MSNFAATVDARKYEPRDKHPVIFKTFEGLALGEKMELINDHDPRPLHYQFIIERPETFEWEYLEEGPEVWRVAITKK
>NC_010674.1|WP_012424131.1|2138445_2138607_-|rubredoxin
MDSYVCTVCGYIYDPVVGDTDNGVAPGTKFEDIADDWVCPLCGVPKSDFEKVE
>NC_010674.1|WP_079991389.1|2138070_2138403_+|hypothetical-protein
MKICNIIQKQILILVITVRNCSLFSIVHRKAASGYEAEVTVYECESCENCSHKAKCTKAKANRKMQVSKTFVEKREISYKNIITEKGASLLIKINHFATAPYKFIISLIF
>NC_010674.1|WP_012424904.1|2136565_2137798_+|FprA-family-A-type-flavoprotein
MEKNIMLNENIFWVGKVDDRDVPFHRLTLTKGTTYNSYLLMTEKPTVIDTVDISFGREFVENLKNVIELDKIKYIVINHTEPDHSGSLRSLATKATNAVIVCTKPAVNELKEMYKLHDREFLVVGDGDTLDIGGKTLKFIETPYLHTEETMVTYCEEDKILFPCDIFSTHVANYEYFNDMAKKDIKDDFIGYYKLIMHPHRRYVQNMIEKIRNLDIRMIAPSHGFIIRDDIKSFIDIYDNMSKNTDLDKKALILYSTMTGSTKKIATILNEKFEEQNITSEVMDVNKIPMEEVMKSINEADVIFFGSSTRYGDMIGNMEDILKNLKSLNLESKLGAAFGSYGWSGEAIEVVQDYLNETNLKVLNTSHVIKSTGMIDIELPLRIRFSPKEDILKNIERLVTYVSDLLLSTI
>NC_010674.1|WP_012425258.1|2135302_2136073_-|oxidoreductase
MIDNKVSSDSRWKGFKDFRVFKIVKEDEVVTSFYLKSLDGSKLPEFIAGQFITVRIKNEDNTFTKPRQYTLSMNYNEEFYRISVKREENGFLSKKLCDEIKAGDNLQITAPLGNFILKNSEKPLVLIGGGIGITPMLTMAYDAVSSDRKIHFIYSIPNSTHHSFKEETAKLNNNNFKSTVLYTRPTETEELGKDFDIKGRISREWMIDNLPKDGEFYFCGPVPFMKTIYHNLISMGIEKEYINFEMFEAGVDITKE
>NC_010674.1|WP_012422907.1|2133790_2135251_-|NADP-dependent-glyceraldehyde-3-phosphate-dehydrogenase
MFNHIKDENNTFKNLINGEWVSSRSFVEIKSPLSNSLLGRVPAMTKEEVDIAVQTAKEAQKKWNKITINERAEILYKASDILLENIDELSELMMMEIAKDRKSCRSEVSRTSDFIKFTADTAKNLSGESIPGDSFPGFKNNKVSIVKREPLGVVLAISPFNYPINLSASKIAPGLMAGNSVVLKPATQGSLCGLYLARIFEKAGVPAGVLNTITGKGSEIGDYITTHKGINFINFTGSTEVGARISKMTSMVPLLMELGGKDAAIVLEDADLELTASNIVAGGYSYSGQRCTAVKRILVVDKVADKLLEKIKEKMKKLTVGNPLEKDVDIVPLISSKAADFVIELIEDAKSKGADLIVGGNREGNLIYPTLFDNVTTDMRLAWEEPFGPVLPIIRVKDKDEAIEIANKSEYGLQSAVFTKNINDAFYVADKLEVGTVQINNKTERGPDNFPFMGVKASGIGTQGIKYSIESMSRPKATIINLSIHN
>NC_010674.1|WP_012423745.1|2133282_2133699_-|flavodoxin
MKIIYWSQSGNTEKMASLILEGIKSEGGKAELLEVSAVSLDDVKNEEILILGCPASGAEELEESEMEPFVKSLEGIIKGKKVALFGSWGWGNGEWMTEWEKRMESYGATLISEGLTVQEYPEGEDENKCISFGKLIVK
>NC_010674.1|WP_012423143.1|2146233_2147025_-|esterase
MNKSKIEKVNFYSDALGKESSMLVYLPESYSSVTPLPVLYFLHGRSGNENVIFELDIKTKADRMIKDGEIKPIIIVCPRIENSRGVNSSLIYEEISDYGNNNRIINLGMYEDYFIKEIVPLIDKTFNTIKDRKGRYIGGASAGGYAALHNTFRHQNMFSKVGGHMPALELELEDEDKTYYKDMGVWEKYDPICIARNNNISLDINVYLDAGDQDEGKFYEGCSILYEILKEKGIKSQNHVFRGNHNVEYIKSNIEKYLKFYGR
>NC_010674.1|WP_012425568.1|2147267_2148137_+|AraC-family-transcriptional-regulator
MKNLQTYYYKKMPNPNLGIDIFLAEGFCKGRKFNTHWHENMQLYFFTEGKALVECNKKRYYVAADSIVVINSNELHSLESLSDDLKFYTIRIDSSFLFSNQVDLCQTKFLSPLSQNQIFFQNLIEDDKQILDCVTITIQEYLSKEIGYELAVKSFIYQLIVLLLRKYISKFLTRKELILKVNNLKRFDLVFKYIDSNYSKKITTSDLSDIVHISNYHFCRTFKQMTGKTTTDYINGIRLEKAVNYLNKGDLNITEIALRCGFDSINYFSRLFKKHYNVSPTQFKKTNFK
>NC_010674.1|WP_012424189.1|2148333_2149062_+|hypothetical-protein
MKKLNAFQIKVFLIIMMLLDHISSAFPGVLPNWTHAITRGVSPMFAYFLVEGYFYTRSKKKYGIRLLSFAVLMYLGNTLINTLLAVKGVYVENNIFETLFAGFIGIWIFDYAKKKQGSVKVLLIILGVVCSIIGALFTEGGLSVIPFILITYFFRENTKKQIVGYLLLSIVLFFMVFTPYETVTETIDMLMFNSDFLLILAIPTILLYNGERGLNNKFSKYLFYVFYPLHLWGLAIISYLIK
>NC_010674.1|WP_012422668.1|2149302_2150514_-|MFS-transporter
MKNISFKLNTIRSFSMNLLFNSFGNSVVGTIYVLFLSQVKGFSDKDVSLMVGLIPIITIPSYILWGIIIDKTKKVVLTNKMVIIANIVTLILLIYVDNIYAFFIINLIRTVLLQPGGMVNDEYLLNLVKDNTGSYGSIRTFGTVGYGLGGLVCLLLMDYIEISGLLIIAIMSLASTLLFISKMPEINIDKSLKKGYHKTKFKIEQLDLLKNMKYMRLMIIYVLMNGTLASASSYAIPMIMIKLDAPQNIIGVMPFIMIVFELILLLQNKRLNFPKKRNKYLLIGLILLTIRWITMGVTESYIIIILISIIHGAVAGILLPIQNDMVEKFVPQNQQSTAIMLQTLLSSTIVPSILNIILGFLLEPWVIKSFGIVYLICNVITLFMYIINLLFNRYEEKRVVFDK
>NC_010674.1|WP_012425832.1|2150618_2151509_-|ROK-family-protein
MKYYIGIDIGGTNLRAAILDEKCNLVDKLKISNEVEKGPEYNLDKLILEIKERWSDKEIISVGVGCPGPLDIRSGTILVTPNLRTWEYFKLKEYLENKFDLPVFVNNDANVAGYSEAMVGAGKGAESVYYMTLSTGIGGGFIYKGEIVSGFNSIAAEIGNMIINEDTYKHSNMNYGGLEGQCSGVNIARISSEIIGGELTTKDVFEGAEKGNMELQKMLSEWVTNVSKAIANIIVTVDPEVIVLGGSVIINNPSYLNKIKEETQKRVFDGIKINIKLAEIGDDTGLIGAGLLGKLK
>NC_010674.1|WP_012424859.1|2151519_2152455_-|mannose-6-phosphate-isomerase
MYPIKFKNIYYEKIWGGRDLAQFRDNLPLGDIGESWDVACHSNGMSIVENGELKGKRFDELIKEYGKDLLGESFENKDFPLLVKLINSREKLSVQVHPNDEYANRVENSLGKTEAWYVVDAKPGACLIVGTKDCNKAVFEKAIKEGKTEDYLNKIQVKKGDCFLINSGLVHAICEGVIIAEIQQNSDITYRIYDYGRPREIHVDKSLDVIDFGLKAMNFSENKLDSYDGYKKGVLCSSEYFTMEKYVVNGEVEESSDINKFFIFTCVDGNGFIKSLHGHDIEVLKGDSILIPAKLGKYVIEGNLTLLKSYI
>NC_010674.1|WP_012423930.1|2152632_2154234_-|alpha-glucosidase
MHKKWWKESVFYEIYMPSFKDGNNDGIGDFKGITSKLEYLSDLGIRGIWLTPFYPSPKVDNGYDISDYYNIDKDYGTLEDFNEFLSKAHSLGIKIIVDIVLNHTSSEHPWFKESRKSKDNEKRDFYIWKKEKPNNWESFFGGEAWEYDELTKEYYYHAFAKEQVDLNWSNPKVYDAMKDVLKYWIDLGVDGFRFDVINFLTIKNDLAQDNPYDEKGEQIHKYDKDQEGIIEIIKTLVKDIREIKEDVFLVGEVGSEDLNELRGYSGKDLLDVVFNFNLGSINEFSAEKIYKEIKNMNDNYDSYQIPTIFFNSHDMGRSISRFNPDGNKNGIEKAMAALLLISYGVPFMYFGEEIGMKDLVCLDINKMNDIQGVTKYNIEISNGKTQEEALISANKSSRDKSRSPMQWNNSKFYGFSNTMPWINIEDKNDNELVEKQIKEEGSLINLYKDLIKIRYKNDTLLYGKYANLSFDDGVLIMERELNNETIRTVINFGDNEYIENNTEEIIYRNIKVQEKRTLGKFDFIIQRYKAITN
>NC_010674.1|WP_012423012.1|2154248_2155166_-|DUF1861-family-protein
MKDMKTCEILLAEYLKSESKIYGVEKINFINVGENDVYNISAPFVDNDKTIIAGRVEARDSEHSTVYFFEKNDEGWSPIDSYPTFSLQDPFFTKINNELIVGGVEIFPHPEIEGTLKWRTIFYKGKDVASLERFFVGPDGMKDLRLVQLLDKRIGVLTRPQGEKGGRGRIGFSIINTLEELNIKVIEESPLLDGLFVDEEWGGANEARPLNETTLGILGHVACFDKDGNRHYYPMTFELNINTLEVKNQKLIAVRKDFKPGQAKRPDLEDVVFSGGLEIKEDKATLYAGISDAEAQFIIIDNPFK
>NC_010674.1|WP_012425824.1|2155179_2156241_-|LacI-family-transcriptional-regulator
MGKVTMKDIAAKLNISINAVSLALNGKPGVSEETKKLVLDVAEKIGYLDRSPKFIQSFASKNICALIKQSHFEDSTFYSKILMSIVEEARKKGYDVITCIVNEDEQNIPSCIESKKVCGIIIISAIDDDYLIKLKEFELPVVLVDHASLLENTDSILTNNKLGSFKITKLLLDKGYTKIGFFGDLEYSLSIKERFFGYQEAIKKFIKFDNKDGITDFINDYSILSDLESYIINQDSEGIQKKISQMDNIPEAFVCSNDNAAIMLITSLKELGYEIPKDISVVGFDDIILSSLVMPKVTTVRVQKELMGKNAVNRLLWRIDHKDAPNEDIVMGVDIVERDSVGIKNIMENEQKN
>NC_010674.1|WP_012424962.1|2156309_2157398_-|glycosidase
MNNKLNVVRSAKNPLIKPSDVKPSREDFKVDGVFNCGVCKYKDEYILLCRVAESVKVENEDEVKIPVVANENGKDAIKIISFNKKIDTEFDYSDSRSLWKLEKKGTRKIAYLTSLSHIRIARSKDGENFEIDDNAFIKPIASEEEWGIEDPRITQIDNKYYINYTSVTRNGAATSLVSTEDFKSYERHGIIFAPENKDVTIFPEKVNGKYLTFNRPVPCAIGAPDMWLAESPDLIHWGKQKHFYGGSDEESWDSGRVGGGAVPFLTEKGWLKIYHAADKEDRYCLGAFLLDKDDPMKILAKTNDPILEPEAVYEKDGFFGNVVFTCGCLFEDGIVKIYYGAADDKICRADIKIEDIFALMDK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010674_3	3.2\|2143520\|36\|NC_010674\|CRISPRCasFinder,CRT,PILER-CR	2143520-2143555	36	NC_010674.1	1997690-1997725	0	1.0

1. spacer 3.2|2143520|36|NC_010674|CRISPRCasFinder,CRT,PILER-CR matches to position: 1997690-1997725, mismatch: 0, identity: 1.0

attttcataatgttttaatgtagtaattactatttg	CRISPR spacer
attttcataatgttttaatgtagtaattactatttg	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010674_3	3.11\|2144106\|34\|NC_010674\|CRISPRCasFinder,CRT,PILER-CR	2144106-2144139	34	NC_015498	Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence	268855-268888	9	0.735
NC_010674_3	3.11\|2144106\|34\|NC_010674\|CRISPRCasFinder,CRT,PILER-CR	2144106-2144139	34	NC_018492	Bacillus cereus FRI-35 plasmid p01, complete sequence	25432-25465	9	0.735
NC_010674_3	3.11\|2144106\|34\|NC_010674\|CRISPRCasFinder,CRT,PILER-CR	2144106-2144139	34	NZ_CP016317	Bacillus cereus strain M3 plasmid pBCM301, complete sequence	224845-224878	9	0.735
NC_010674_3	3.11\|2144106\|34\|NC_010674\|CRISPRCasFinder,CRT,PILER-CR	2144106-2144139	34	NZ_CP045274	Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence	7126-7159	10	0.706
NC_010674_3	3.11\|2144106\|34\|NC_010674\|CRISPRCasFinder,CRT,PILER-CR	2144106-2144139	34	NZ_MK275620	Clostridium perfringens strain JXJA17 plasmid p2, complete sequence	13577-13610	10	0.706
NC_010674_3	3.11\|2144106\|34\|NC_010674\|CRISPRCasFinder,CRT,PILER-CR	2144106-2144139	34	NC_008265	Clostridium phage phiSM101, complete genome	19383-19416	10	0.706

1. spacer 3.11|2144106|34|NC_010674|CRISPRCasFinder,CRT,PILER-CR matches to NC_015498 (Glaciecola sp. 4H-3-7+YE-5 plasmid pGLAAG01, complete sequence) position: , mismatch: 9, identity: 0.735

caggcgataatattaaagaaaaagtaagtataac	CRISPR spacer
ttgcaaataatatgaaggaaaaagtaagtatgaa	Protospacer
. *  .******* **.**************.*

2. spacer 3.11|2144106|34|NC_010674|CRISPRCasFinder,CRT,PILER-CR matches to NC_018492 (Bacillus cereus FRI-35 plasmid p01, complete sequence) position: , mismatch: 9, identity: 0.735

caggcgataatattaaagaaaaagtaagtataac	CRISPR spacer
tagatgaaattattaaagaaaaagtaagtggagt	Protospacer
.**..** * *******************. *..

3. spacer 3.11|2144106|34|NC_010674|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016317 (Bacillus cereus strain M3 plasmid pBCM301, complete sequence) position: , mismatch: 9, identity: 0.735

caggcgataatattaaagaaaaagtaagtataac	CRISPR spacer
tagatgaaattattaaagaaaaagtaagtggagt	Protospacer
.**..** * *******************. *..

4. spacer 3.11|2144106|34|NC_010674|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045274 (Bacillus megaterium strain FDU301 plasmid pFDU301B, complete sequence) position: , mismatch: 10, identity: 0.706

caggcgataatattaaagaaaaagtaagtataac	CRISPR spacer
ataaagataatattaaagaaataataagtcaatc	Protospacer
  .. **************** *.*****  * *

5. spacer 3.11|2144106|34|NC_010674|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK275620 (Clostridium perfringens strain JXJA17 plasmid p2, complete sequence) position: , mismatch: 10, identity: 0.706

caggcgataatattaaagaaaaagtaagtataac	CRISPR spacer
cttttaaaaattttaaagaaaaagtaagaatagt	Protospacer
*   ..* *** **************** ***..

6. spacer 3.11|2144106|34|NC_010674|CRISPRCasFinder,CRT,PILER-CR matches to NC_008265 (Clostridium phage phiSM101, complete genome) position: , mismatch: 10, identity: 0.706

caggcgataatattaaagaaaaagtaagtataac	CRISPR spacer
cttataaaaattttaaagaaaaagtaagaatagt	Protospacer
*  ...* *** **************** ***..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

17709 : 45594

Clostridium_phage(33.33%)

tRNA,tail,integrase,portal,terminase,capsid,head,protease

attL 35812:35830|attR 52237:52255

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012424888.1\|17709_18987_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	6.5e-87	50.0
WP_012424627.1\|20243_20762_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012423101.1\|20790_24249_+	helicase-exonuclease AddAB subunit AddB	NA	NA	NA	NA
WP_012425324.1\|24274_28006_+	helicase-exonuclease AddAB subunit AddA	A0A068EQC7	Bacillus_phage	2.6e-19	23.9
WP_012424575.1\|28287_29439_-	L,D-transpeptidase	NA	NA	NA	NA
WP_012424208.1\|29594_30404_+	DUF1189 domain-containing protein	NA	NA	NA	NA
WP_012425639.1\|30461_31631_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_012425100.1\|31968_32865_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	3.2e-24	27.8
WP_012422737.1\|33190_34345_-\|integrase	site-specific integrase	A0A0A8WIF9	Clostridium_phage	2.5e-37	30.7
WP_012424042.1\|34345_34930_-	helix-turn-helix transcriptional regulator	I3VYZ1	Thermoanaerobacterium_phage	9.8e-06	34.5
WP_041712334.1\|35157_35451_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012425384.1\|35746_37507_+	ATPase	NA	NA	NA	NA
35812:35830	attL	NA	NA	NA	NA
WP_012422760.1\|37764_38001_+	hypothetical protein	NA	NA	NA	NA
WP_012423107.1\|38123_38354_+	DUF5348 domain-containing protein	NA	NA	NA	NA
WP_012423837.1\|38369_38522_+	hypothetical protein	NA	NA	NA	NA
WP_079991394.1\|38777_39938_+\|portal	phage portal protein	A0A1L2BY94	Clostridium_phage	6.2e-60	37.4
WP_012423118.1\|39900_40458_+\|head,protease	HK97 family phage prohead protease	Q9AZY6	Lactococcus_phage	5.7e-11	29.2
WP_012423878.1\|40459_41686_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_012425025.1\|41861_42122_+\|head,tail	phage gp6-like head-tail connector protein	A6M953	Geobacillus_virus	1.7e-10	42.0
WP_012425794.1\|42126_42669_+\|integrase	tyrosine-type recombinase/integrase	E2ELN7	Clostridium_phage	1.1e-32	41.3
WP_012425247.1\|42838_43150_+	HNH endonuclease	R9TNN2	Paenibacillus_phage	5.7e-21	47.8
WP_012422942.1\|43249_43594_+	hypothetical protein	A0A1L2BY96	Clostridium_phage	7.2e-17	40.4
WP_041712067.1\|43590_45234_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	2.1e-162	52.7
WP_012424770.1\|45276_45594_+\|head	phage head closure protein	NA	NA	NA	NA
52237:52255	attR	NA	NA	NA	NA

DBSCAN-SWA_2

452496 : 505666

Clostridium_phage(25.0%)

coat,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012424774.1\|452496_453516_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.3e-63	40.1
WP_012425553.1\|453518_454523_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012422980.1\|454687_455875_+\|protease	trypsin-like serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	1.2e-15	26.4
WP_012424091.1\|456036_456456_+	carboxypeptidase regulatory-like domain-containing protein	NA	NA	NA	NA
WP_012424834.1\|456782_457865_+	ethanolamine utilization protein EutH	NA	NA	NA	NA
WP_012422725.1\|457890_459027_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_012423445.1\|459029_460151_-	glycosyltransferase family 4 protein	B6EFC4	Stygiolobus_rod-shaped_virus	8.4e-06	33.8
WP_012422807.1\|460297_461314_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_012423932.1\|461333_462059_+\|coat	spore coat protein	NA	NA	NA	NA
WP_012423014.1\|462152_463196_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_012425880.1\|463401_464544_-	glycosyltransferase family 4 protein	Q8V9P0	Sulfolobus_islandicus_rod-shaped_virus	3.0e-06	27.7
WP_012425110.1\|464653_465655_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_012424380.1\|465855_466719_+	sporulation peptidase YabG	NA	NA	NA	NA
WP_003369318.1\|466907_467150_+	protein veg	NA	NA	NA	NA
WP_012424418.1\|467563_469126_+	DUF3794 domain-containing protein	NA	NA	NA	NA
WP_012423934.1\|469350_470196_+	cyanophycinase	NA	NA	NA	NA
WP_012422995.1\|470167_472786_+	cyanophycin synthetase	NA	NA	NA	NA
WP_012425808.1\|472966_473809_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_012424648.1\|473870_474497_+	stage II sporulation protein R	NA	NA	NA	NA
WP_012425692.1\|474534_475527_+	DUF814 domain-containing protein	NA	NA	NA	NA
WP_012424695.1\|475591_476014_+	DUF1934 domain-containing protein	NA	NA	NA	NA
WP_012424159.1\|476139_476439_+	hypothetical protein	NA	NA	NA	NA
WP_012423236.1\|476624_478226_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.0e-150	51.0
WP_012424213.1\|478608_480234_+	transcription termination factor Rho	NA	NA	NA	NA
WP_012423277.1\|480273_481380_-	galactosyldiacylglycerol synthase	NA	NA	NA	NA
WP_003374052.1\|481521_481731_-	50S ribosomal protein L31	NA	NA	NA	NA
WP_012424583.1\|481908_482496_+	thymidine kinase	A0A249XXF6	Clostridium_phage	1.2e-51	51.6
WP_012425848.1\|484555_485638_+	peptide chain release factor 1	NA	NA	NA	NA
WP_026072172.1\|485719_486307_+	hypothetical protein	NA	NA	NA	NA
WP_012423972.1\|486325_487375_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	5.1e-45	37.0
WP_012424929.1\|487498_487948_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_003372223.1\|487993_488623_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_012423888.1\|488737_489232_+	cytidine deaminase	A0A2H5BMD7	Streptomyces_phage	5.2e-16	38.2
WP_012424440.1\|489359_490508_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	5.2e-27	27.7
WP_012425289.1\|490637_491819_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_012423362.1\|492862_493228_+	hypothetical protein	NA	NA	NA	NA
WP_012423834.1\|493229_493910_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_003369994.1\|493942_494158_+	ATP synthase F0 subunit C	NA	NA	NA	NA
WP_012424573.1\|494208_494688_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_003373046.1\|494690_495230_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_012423956.1\|495240_496755_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_012424335.1\|496795_497647_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_012425883.1\|497662_499054_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_012422611.1\|499067_499472_+	ATP synthase F1 subunit epsilon	NA	NA	NA	NA
WP_012423612.1\|499629_500268_+	hypothetical protein	NA	NA	NA	NA
WP_012423720.1\|500329_501592_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_012425112.1\|501709_502747_+	stage II sporulation protein D	Q2XU88	Pseudomonas_phage	7.7e-38	38.2
WP_012425175.1\|502919_503645_+	M23 family metallopeptidase	NA	NA	NA	NA
WP_012423010.1\|503735_503990_+	sporulation transcriptional regulator SpoIIID	M9Q261	Clostridium_phage	6.3e-18	60.0
WP_012423725.1\|504069_505104_+	rod shape-determining protein	NA	NA	NA	NA
WP_012424875.1\|505147_505666_-\|protease	spore protease YyaC	A0A0A8WIQ6	Clostridium_phage	1.4e-27	38.1

DBSCAN-SWA_3

585355 : 593710

Clostridium_phage(33.33%)

integrase

attL 589340:589356|attR 601430:601446

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041712129.1\|585355_586675_-	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	3.7e-08	23.4
WP_012425312.1\|586891_587512_+	competence protein ComEA	NA	NA	NA	NA
WP_012424544.1\|587694_588399_+	hypothetical protein	NA	NA	NA	NA
WP_012423953.1\|588424_588802_+	hypothetical protein	NA	NA	NA	NA
WP_012422699.1\|588818_590171_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	4.4e-57	31.4
589340:589356	attL	NA	NA	NA	NA
WP_012425469.1\|590239_591397_-\|integrase	site-specific integrase	A0A0A8WIE1	Clostridium_phage	8.2e-105	52.3
WP_012425763.1\|591380_591554_-	hypothetical protein	NA	NA	NA	NA
WP_012423607.1\|591738_592113_-	helix-turn-helix transcriptional regulator	A0A090D830	Clostridium_phage	2.2e-11	34.4
WP_012423892.1\|592312_592501_+	DUF739 family protein	NA	NA	NA	NA
WP_012423366.1\|592552_592762_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012423488.1\|592778_593000_+	helix-turn-helix domain-containing protein	A0A2I7SCU5	Paenibacillus_phage	3.2e-10	52.4
WP_079991382.1\|593077_593710_+	hypothetical protein	V5UQV4	Oenococcus_phage	1.8e-37	55.2
601430:601446	attR	NA	NA	NA	NA

DBSCAN-SWA_4

916303 : 967612

Clostridium_phage(63.33%)

tRNA,tail,terminase,integrase,portal,coat,capsid,head,protease

attL 919865:919880|attR 955054:955069

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012425194.1\|916303_916963_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_012424688.1\|917129_918071_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_012425544.1\|918163_918928_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_012422881.1\|918927_920232_+\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
919865:919880	attL	NA	NA	NA	NA
WP_012423643.1\|920448_920793_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003371500.1\|920929_921106_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_012422873.1\|921135_921585_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.7e-18	40.8
WP_012424855.1\|921837_922116_+	sporulation protein YqfC	NA	NA	NA	NA
WP_012422946.1\|922118_923249_+	sporulation protein YqfD	NA	NA	NA	NA
WP_012423395.1\|923283_925344_+	HDIG domain-containing protein	NA	NA	NA	NA
WP_012424135.1\|925356_925857_+	rRNA maturation RNase YbeY	NA	NA	NA	NA
WP_012424392.1\|925881_926583_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_012425102.1\|927133_928021_+	GTPase Era	NA	NA	NA	NA
WP_012424436.1\|928045_928795_+	DNA repair protein RecO	NA	NA	NA	NA
WP_012425149.1\|928801_929419_+	DUF4342 domain-containing protein	NA	NA	NA	NA
WP_012422964.1\|929461_930094_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012423689.1\|930182_932810_+	pyruvate, phosphate dikinase	A0A2D2W2B1	Stenotrophomonas_phage	2.3e-86	39.3
WP_012422884.1\|932983_934051_-\|coat	CotS family spore coat protein	NA	NA	NA	NA
WP_012425227.1\|934238_935267_+	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_012424323.1\|935515_937294_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.2e-57	34.9
WP_012424233.1\|937299_938424_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	4.2e-37	37.6
WP_012423256.1\|938516_939203_+	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012425669.1\|939249_940041_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_012423774.1\|940097_940334_+	hypothetical protein	NA	NA	NA	NA
WP_012422909.1\|940840_942001_-\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	9.9e-50	34.5
WP_012425267.1\|942040_942478_-	ImmA/IrrE family metallo-endopeptidase	Q0H245	Geobacillus_phage	6.6e-07	29.2
WP_012424955.1\|942493_942940_-	helix-turn-helix transcriptional regulator	A0A0A7RTK4	Clostridium_phage	3.2e-17	37.6
WP_012424471.1\|943162_943372_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012423923.1\|943384_944263_+	ORF6N domain-containing protein	Q8SBM8	Clostridium_phage	9.4e-61	46.8
WP_012423353.1\|944265_944472_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012425725.1\|944601_945291_+	AntB	R9TLP5	Paenibacillus_phage	7.5e-21	41.4
WP_012425269.1\|945290_945506_+	hypothetical protein	NA	NA	NA	NA
WP_012423753.1\|945892_946588_+	hypothetical protein	A0A0S2MYA8	Enterococcus_phage	5.9e-42	59.4
WP_012422811.1\|946601_947918_+	replicative DNA helicase	A0A0K1LLK3	Bacillus_phage	2.8e-56	33.9
WP_003373940.1\|948017_948281_+	hypothetical protein	NA	NA	NA	NA
WP_012424097.1\|948497_949199_+	hypothetical protein	NA	NA	NA	NA
WP_041712359.1\|949402_950035_+	DNA methyltransferase	A0A0E3DFA6	Bacillus_phage	2.3e-85	68.5
WP_012424283.1\|950064_950268_+	hypothetical protein	NA	NA	NA	NA
WP_012423251.1\|950275_950500_+	hypothetical protein	NA	NA	NA	NA
WP_012422904.1\|950571_950919_+	hypothetical protein	NA	NA	NA	NA
WP_012423681.1\|950924_951317_+	hypothetical protein	A0A1L2BY86	Clostridium_phage	1.7e-38	62.3
WP_012424870.1\|951466_951649_+	hypothetical protein	A0A1L2BY88	Clostridium_phage	4.4e-13	55.7
WP_012425563.1\|951653_952292_+\|integrase	tyrosine-type recombinase/integrase	A0A1J1J900	Escherichia_phage	4.3e-63	62.1
WP_012424849.1\|952587_953067_+	Xaa-His dipeptidase	NA	NA	NA	NA
WP_012425587.1\|953076_953535_+	hypothetical protein	Q0SPJ9	Clostridium_phage	9.0e-15	39.7
WP_012424435.1\|953623_954085_+\|terminase	phage terminase small subunit P27 family	A0A0A7RUQ4	Clostridium_phage	2.1e-35	54.2
WP_012424938.1\|954087_955770_+\|terminase	terminase large subunit	A0A0A7RUM0	Clostridium_phage	4.9e-183	57.9
955054:955069	attR	NA	NA	NA	NA
WP_044025884.1\|955979_957170_+\|portal	phage portal protein	I2E8V3	Clostridium_phage	2.0e-90	48.7
WP_012424927.1\|957170_957797_+\|head,protease	HK97 family phage prohead protease	I2E8Y9	Clostridium_phage	4.5e-65	58.6
WP_012425842.1\|957845_958931_+\|capsid	phage major capsid protein	I2E8V4	Clostridium_phage	5.5e-87	51.1
WP_012423830.1\|958978_959269_+\|head,tail	phage gp6-like head-tail connector protein	I2E8V5	Clostridium_phage	1.5e-10	46.3
WP_012423893.1\|959261_959582_+\|head	phage head closure protein	Q8SBP6	Clostridium_phage	5.9e-21	51.5
WP_041712147.1\|959590_960034_+	hypothetical protein	I2E8V7	Clostridium_phage	4.8e-21	35.5
WP_012425130.1\|960038_960374_+	hypothetical protein	I2E8V8	Clostridium_phage	1.2e-19	42.6
WP_012425846.1\|960410_961010_+\|tail	tail protein	Q8SBP3	Clostridium_phage	9.6e-41	47.9
WP_003368955.1\|961057_961372_+	hypothetical protein	I2E8W0	Clostridium_phage	1.1e-19	50.0
WP_012423946.1\|961446_961878_+	hypothetical protein	NA	NA	NA	NA
WP_012424626.1\|961948_965209_+\|tail	phage tail tape measure protein	A0A1L2BYA6	Clostridium_phage	6.1e-73	60.6
WP_012425041.1\|965213_965930_+	hypothetical protein	A0A0A7RWN1	Clostridium_phage	4.5e-29	33.1
WP_012424324.1\|965926_967612_+	hypothetical protein	A0A0A8WIC9	Clostridium_phage	9.6e-70	42.8

DBSCAN-SWA_5

1127153 : 1137388

Prochlorococcus_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012424797.1\|1127153_1130900_+	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	7.4e-30	29.4
WP_003371243.1\|1131391_1131871_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.3e-27	45.5
WP_012424889.1\|1131870_1132578_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FUQ7	Synechococcus_phage	4.8e-47	44.8
WP_012424148.1\|1132693_1134121_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.8e-54	32.3
WP_012422618.1\|1134130_1135132_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SR00	Cyanophage	1.1e-68	46.9
WP_012425200.1\|1135119_1135734_+	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	9.3e-23	36.6
WP_012424513.1\|1135882_1137388_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	E3SNU8	Prochlorococcus_phage	2.8e-36	46.6

DBSCAN-SWA_6

1988117 : 1996254

Clostridium_phage(71.43%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012423300.1\|1988117_1988318_-	UviB-like protein	A0A2H4JAI7	uncultured_Caudovirales_phage	4.6e-16	61.5
WP_012425097.1\|1988382_1989168_-	hypothetical protein	A0A2H4J270	uncultured_Caudovirales_phage	1.1e-15	35.7
WP_012422817.1\|1989392_1989947_-	hypothetical protein	NA	NA	NA	NA
WP_012425395.1\|1990028_1990238_-	hypothetical protein	NA	NA	NA	NA
WP_012425575.1\|1990333_1990531_-	hypothetical protein	NA	NA	NA	NA
WP_012424871.1\|1990543_1990882_-	hypothetical protein	NA	NA	NA	NA
WP_012425528.1\|1990899_1992291_-\|tail	phage tail protein	A0A0A7RTP0	Clostridium_phage	2.4e-50	61.2
WP_012424817.1\|1992290_1992908_-	YmfQ family protein	A0A0A7RTT8	Clostridium_phage	5.3e-42	40.7
WP_012424061.1\|1992897_1993965_-\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	2.1e-67	42.2
WP_012423346.1\|1993976_1994432_-	DUF2634 domain-containing protein	A0A0A7S0E2	Clostridium_phage	7.9e-11	29.8
WP_041712207.1\|1994431_1994782_-	DUF2577 domain-containing protein	NA	NA	NA	NA
WP_012425660.1\|1994796_1996254_-	NlpC/P60 family protein	X5JAJ3	Clostridium_phage	2.4e-21	30.2

DBSCAN-SWA_7

2000862 : 2024877

Clostridium_phage(50.0%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012424860.1\|2000862_2001942_-	XkdK protein	A0A0A7S0D2	Clostridium_phage	5.2e-29	30.9
WP_041712211.1\|2001998_2002448_-	hypothetical protein	NA	NA	NA	NA
WP_012425442.1\|2002444_2002849_-	HK97 gp10 family phage protein	A9D9U1	Lactobacillus_prophage	7.0e-11	31.8
WP_012423003.1\|2002841_2003186_-	hypothetical protein	NA	NA	NA	NA
WP_012423916.1\|2003188_2003476_-	hypothetical protein	NA	NA	NA	NA
WP_012423122.1\|2003490_2004426_-	hypothetical protein	A0A090D825	Clostridium_phage	1.9e-96	55.9
WP_012425623.1\|2004462_2005062_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_012425026.1\|2005159_2005468_-	hypothetical protein	A0A2K9V384	Faecalibacterium_phage	2.9e-09	40.4
WP_012425758.1\|2005500_2005674_-	hypothetical protein	NA	NA	NA	NA
WP_012425052.1\|2005733_2005955_-	hypothetical protein	NA	NA	NA	NA
WP_012423427.1\|2005990_2006194_-	hypothetical protein	NA	NA	NA	NA
WP_012422750.1\|2006248_2007130_-	hypothetical protein	A0A1V0DZW9	Clostridioides_phage	6.8e-27	31.9
WP_012425354.1\|2007119_2008484_-\|portal	phage portal protein	A0A1V0DZW8	Clostridioides_phage	3.0e-53	32.3
WP_012425530.1\|2008499_2010224_-	hypothetical protein	A0A1V0DZW7	Clostridioides_phage	1.4e-108	37.7
WP_012423700.1\|2010261_2010453_-	hypothetical protein	NA	NA	NA	NA
WP_012424447.1\|2010525_2011173_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.4e-07	33.3
WP_012423609.1\|2011402_2011840_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012424650.1\|2011987_2012668_-	hypothetical protein	NA	NA	NA	NA
WP_012425866.1\|2012671_2012842_-	hypothetical protein	NA	NA	NA	NA
WP_012422768.1\|2012898_2013588_-	hypothetical protein	A0A0A7RVU3	Clostridium_phage	3.0e-38	45.1
WP_012424998.1\|2015087_2015612_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	6.7e-06	25.5
WP_012424622.1\|2015636_2015786_-	hypothetical protein	NA	NA	NA	NA
WP_044026035.1\|2015789_2016020_-	hypothetical protein	F8UBQ8	Clostridium_phage	3.8e-06	48.1
WP_012423419.1\|2016190_2016391_-	hypothetical protein	NA	NA	NA	NA
WP_012425772.1\|2016400_2016808_-	single-stranded DNA-binding protein	Q8SBL5	Clostridium_phage	1.1e-19	39.1
WP_012425009.1\|2016800_2017292_-	hypothetical protein	NA	NA	NA	NA
WP_012423442.1\|2017336_2018050_-	hypothetical protein	A0A0A7RWW3	Clostridium_phage	2.6e-69	59.6
WP_012425306.1\|2018369_2018558_-	hypothetical protein	NA	NA	NA	NA
WP_012424571.1\|2018587_2018863_-	hypothetical protein	NA	NA	NA	NA
WP_012423024.1\|2018892_2019042_-	hypothetical protein	NA	NA	NA	NA
WP_012425799.1\|2019042_2019792_-	hypothetical protein	A0A0B5D175	Listeria_phage	6.0e-40	60.6
WP_012424959.1\|2019800_2020706_-	DUF1351 domain-containing protein	A0A2D1GPE4	Lactobacillus_phage	4.4e-05	23.0
WP_012424364.1\|2020719_2021373_-	recombinase	A0A0A7RVW0	Clostridium_phage	8.3e-30	46.0
WP_012423508.1\|2021385_2021577_-	hypothetical protein	NA	NA	NA	NA
WP_012423323.1\|2021579_2022500_-	hypothetical protein	NA	NA	NA	NA
WP_012423304.1\|2022489_2022654_-	hypothetical protein	NA	NA	NA	NA
WP_012424295.1\|2022797_2023052_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	2.2e-18	60.0
WP_012422984.1\|2023123_2023681_+	hypothetical protein	NA	NA	NA	NA
WP_012423564.1\|2023669_2024026_-	hypothetical protein	NA	NA	NA	NA
WP_012422932.1\|2024097_2024877_-	hypothetical protein	A0A0A8WJ22	Clostridium_phage	2.2e-45	49.4

DBSCAN-SWA_8

2325515 : 2363642

Clostridium_phage(41.38%)

tRNA,tail,portal,terminase,capsid,coat,head,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012425661.1\|2325515_2326235_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.8e-34	35.4
WP_012424541.1\|2326313_2326469_-	hypothetical protein	NA	NA	NA	NA
WP_012425171.1\|2326727_2327336_+	hypothetical protein	NA	NA	NA	NA
WP_012422779.1\|2328306_2329032_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012425341.1\|2329200_2329362_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_012422770.1\|2329749_2329935_-	LexA family transcriptional regulator	NA	NA	NA	NA
WP_012424784.1\|2330687_2331488_-	glycoside hydrolase family protein	A0A142IG96	Bacillus_phage	1.1e-12	35.1
WP_012425277.1\|2331546_2331720_-	hypothetical protein	NA	NA	NA	NA
WP_012422920.1\|2331738_2331951_-	hypothetical protein	NA	NA	NA	NA
WP_012423439.1\|2332368_2332587_-	hypothetical protein	A0A2H4JGH3	uncultured_Caudovirales_phage	6.6e-08	56.5
WP_012423587.1\|2332611_2332902_-	hypothetical protein	NA	NA	NA	NA
WP_012424070.1\|2332903_2334355_-	hypothetical protein	A0A1L2BYA7	Clostridium_phage	1.3e-27	55.2
WP_012423949.1\|2334366_2336109_-	endopeptidase	A0A1L2BYA1	Clostridium_phage	5.6e-49	30.6
WP_012423157.1\|2336105_2336783_-\|tail	tail protein	A0A1B1P761	Bacillus_phage	8.4e-09	33.1
WP_012424586.1\|2336798_2340263_-\|tail	phage tail tape measure protein	B6CXF2	Clostridium_phage	9.7e-77	38.5
WP_012423664.1\|2340313_2340577_-	hypothetical protein	NA	NA	NA	NA
WP_012423519.1\|2340579_2340903_-	hypothetical protein	NA	NA	NA	NA
WP_012422832.1\|2340905_2341487_-	hypothetical protein	NA	NA	NA	NA
WP_012425797.1\|2341489_2341810_-	hypothetical protein	Q9AZY0	Lactococcus_phage	8.0e-10	37.9
WP_012424248.1\|2341802_2342192_-	hypothetical protein	A0A1S5SFC4	Streptococcus_phage	7.4e-10	37.1
WP_012424884.1\|2342191_2342527_-\|head	phage head closure protein	NA	NA	NA	NA
WP_012425648.1\|2342526_2342832_-	hypothetical protein	Q8W603	Listeria_phage	5.6e-13	44.8
WP_012425077.1\|2342846_2344043_-\|capsid	phage major capsid protein	E2ELI5	Clostridium_phage	7.5e-69	38.7
WP_012424143.1\|2344042_2344786_-\|protease	Clp protease ClpP	A0A0K2CXQ5	Paenibacillus_phage	2.9e-39	42.1
WP_012423676.1\|2344778_2345936_-\|portal	phage portal protein	E2ELI3	Clostridium_phage	2.6e-66	36.9
WP_012422954.1\|2345978_2346263_-	hypothetical protein	NA	NA	NA	NA
WP_012425596.1\|2346276_2347923_-\|terminase	terminase large subunit	E2ELI2	Clostridium_phage	3.0e-129	43.8
WP_012424872.1\|2347912_2348413_-	DNA-directed RNA polymerase sigma-70 factor	E2ELI1	Clostridium_phage	1.7e-35	44.5
WP_012424403.1\|2348569_2348896_-	HNH endonuclease	A0A1S7FZ53	Listeria_phage	8.7e-20	48.1
WP_012423213.1\|2348883_2349201_-	hypothetical protein	NA	NA	NA	NA
WP_012422987.1\|2349388_2349901_-	hypothetical protein	A0A2H4JG69	uncultured_Caudovirales_phage	4.5e-07	32.1
WP_012422695.1\|2349917_2350103_-	hypothetical protein	NA	NA	NA	NA
WP_012425250.1\|2350154_2350451_-	hypothetical protein	NA	NA	NA	NA
WP_012424958.1\|2350588_2350837_-\|coat	spore coat protein	NA	NA	NA	NA
WP_012424239.1\|2350849_2351035_-	hypothetical protein	NA	NA	NA	NA
WP_012423088.1\|2351137_2351809_-	manganese catalase family protein	NA	NA	NA	NA
WP_012424450.1\|2351933_2352347_-	DUF3850 domain-containing protein	A0A0A8WI22	Clostridium_phage	1.8e-14	47.7
WP_012423293.1\|2352378_2352663_-	hypothetical protein	NA	NA	NA	NA
WP_012422620.1\|2352889_2353045_-	hypothetical protein	NA	NA	NA	NA
WP_012425174.1\|2353057_2353402_-	hypothetical protein	Q0SPI5	Clostridium_phage	3.4e-22	52.6
WP_012424829.1\|2353414_2353840_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_012423601.1\|2353851_2354838_-	ParB/RepB/Spo0J family partition protein	H7BUL7	unidentified_phage	6.0e-24	36.2
WP_012424987.1\|2354830_2355613_-	ParA family protein	H7BUL8	unidentified_phage	1.1e-44	39.6
WP_012425760.1\|2355615_2356029_-	hypothetical protein	A0A2H4JBP1	uncultured_Caudovirales_phage	8.2e-07	34.1
WP_012423188.1\|2356046_2356208_-	hypothetical protein	NA	NA	NA	NA
WP_012423947.1\|2356197_2356587_-	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	1.5e-18	51.0
WP_012423178.1\|2356593_2357439_-	hypothetical protein	Q0SPI6	Clostridium_phage	2.4e-45	42.3
WP_012425777.1\|2357696_2358083_+	hypothetical protein	NA	NA	NA	NA
WP_041712230.1\|2358012_2358297_-	hypothetical protein	NA	NA	NA	NA
WP_012423360.1\|2358280_2358424_-	aspartyl-phosphate phosphatase Spo0E family protein	NA	NA	NA	NA
WP_012423505.1\|2358688_2358910_+	hypothetical protein	NA	NA	NA	NA
WP_012424441.1\|2358940_2359123_-	hypothetical protein	NA	NA	NA	NA
WP_012424966.1\|2359347_2359494_-	hypothetical protein	NA	NA	NA	NA
WP_012424255.1\|2359728_2360265_+	helix-turn-helix transcriptional regulator	A0A0A8WEL4	Clostridium_phage	1.0e-09	47.6
WP_012425203.1\|2360354_2360552_+	addiction module toxin, HicA family	A0A0R6PJD4	Moraxella_phage	1.3e-18	67.8
WP_012423978.1\|2360591_2361011_+	HicB family protein	A0A090DBV2	Clostridium_phage	6.7e-49	69.5
WP_012423712.1\|2361090_2362434_+	recombinase family protein	B6SBW6	Clostridium_virus	1.3e-74	38.8
WP_012423891.1\|2362883_2363288_-	arsenate reductase ArsC	NA	NA	NA	NA
WP_012424894.1\|2363315_2363642_-	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.1e-17	45.4

DBSCAN-SWA_9

2811278 : 2873906

uncultured_Caudovirales_phage(34.04%)

tail,holin,integrase,plate,portal,terminase,capsid,coat

attL 2818488:2818506|attR 2875823:2875841

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012424593.1\|2811278_2811650_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_012424838.1\|2811818_2812013_-	alpha/beta-type small acid-soluble spore protein	G3MAF8	Bacillus_virus	1.9e-06	51.0
WP_012422880.1\|2812470_2812620_-	hypothetical protein	NA	NA	NA	NA
WP_012423479.1\|2813121_2813439_+	hypothetical protein	NA	NA	NA	NA
WP_079991393.1\|2813571_2813766_+	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_012425062.1\|2814709_2815540_-	hypothetical protein	NA	NA	NA	NA
WP_157860567.1\|2815565_2815718_-	transcriptional regulator	NA	NA	NA	NA
WP_012423114.1\|2815942_2817664_-	S8 family peptidase	NA	NA	NA	NA
WP_012423444.1\|2817650_2819477_-	S8 family peptidase	NA	NA	NA	NA
2818488:2818506	attL	NA	NA	NA	NA
WP_012422770.1\|2820421_2820607_-	LexA family transcriptional regulator	NA	NA	NA	NA
WP_012423663.1\|2821356_2822148_-	glycoside hydrolase family protein	A0A0S2SYD0	Pseudomonas_phage	2.3e-13	35.4
WP_012424533.1\|2822204_2822378_-	hypothetical protein	NA	NA	NA	NA
WP_012425638.1\|2822389_2822626_-	membrane protein	A0A0A7S0T7	Clostridium_phage	1.2e-15	51.3
WP_012423282.1\|2822700_2823762_-	Ig domain-containing protein	A0A1D6Z291	Staphylococcus_phage	4.5e-09	44.3
WP_012424054.1\|2823807_2824989_-	DUF11 domain-containing protein	A0A1L2BYA9	Clostridium_phage	9.7e-53	55.0
WP_012424936.1\|2825425_2825584_-	XkdX family protein	NA	NA	NA	NA
WP_012425501.1\|2825583_2825892_-	hypothetical protein	NA	NA	NA	NA
WP_012424561.1\|2827135_2827786_-	YmfQ family protein	A0A2H4J1P4	uncultured_Caudovirales_phage	2.0e-52	46.5
WP_012424704.1\|2827772_2828894_-\|plate	baseplate J/gp47 family protein	A0A2H4J7K8	uncultured_Caudovirales_phage	3.8e-107	53.7
WP_012425647.1\|2828899_2829340_-	DUF2634 domain-containing protein	A0A2H4J4Q8	uncultured_Caudovirales_phage	3.0e-31	49.4
WP_012425673.1\|2829332_2829674_-	hypothetical protein	A0A2H4J746	uncultured_Caudovirales_phage	2.2e-21	51.9
WP_012423056.1\|2829663_2830683_-	hypothetical protein	A0A2H4J063	uncultured_Caudovirales_phage	5.9e-83	49.3
WP_012424610.1\|2830690_2831380_-	SH3 domain-containing protein	A0A2H4J045	uncultured_Caudovirales_phage	6.7e-46	41.7
WP_012425296.1\|2831505_2832096_-	DUF4352 domain-containing protein	NA	NA	NA	NA
WP_012423644.1\|2832136_2835196_-\|tail	phage tail tape measure protein	A0A2H4J055	uncultured_Caudovirales_phage	1.2e-115	46.1
WP_012423050.1\|2835402_2835846_-	hypothetical protein	A0A2H4J883	uncultured_Caudovirales_phage	5.5e-25	47.1
WP_012422818.1\|2835906_2836329_-\|tail	phage tail tube protein	A0A2H4J032	uncultured_Caudovirales_phage	6.1e-34	50.4
WP_012424951.1\|2836349_2837765_-\|portal	phage portal protein	A0A2H4J1N7	uncultured_Caudovirales_phage	5.3e-122	49.0
WP_044025947.1\|2837765_2837984_-	hypothetical protein	B6SBT6	Clostridium_virus	5.6e-07	48.4
WP_012423920.1\|2837983_2838811_-	hypothetical protein	A0A2H4J4Q0	uncultured_Caudovirales_phage	1.0e-85	57.3
WP_012422971.1\|2838811_2839237_-	hypothetical protein	A0A0N7ACC6	Bacillus_phage	1.5e-16	36.5
WP_012425359.1\|2839248_2839635_-	hypothetical protein	A0A2H4J057	uncultured_Caudovirales_phage	5.1e-35	56.7
WP_012424252.1\|2839634_2839955_-	hypothetical protein	A0A2H4J040	uncultured_Caudovirales_phage	1.6e-26	57.4
WP_012424276.1\|2839956_2840151_-	hypothetical protein	NA	NA	NA	NA
WP_012423388.1\|2840209_2841247_-\|capsid	major capsid protein	A0A0A7RU11	Clostridium_phage	1.1e-119	61.6
WP_012425779.1\|2841260_2841599_-	hypothetical protein	A0A0A7RU46	Clostridium_phage	5.4e-17	46.4
WP_012423434.1\|2841612_2842245_-	phage scaffold protein	A0A0K2CP96	Brevibacillus_phage	5.6e-15	34.3
WP_012424358.1\|2842377_2842776_-	hypothetical protein	A0A2H4J1M8	uncultured_Caudovirales_phage	9.2e-40	63.9
WP_012425426.1\|2843244_2843565_-	hypothetical protein	NA	NA	NA	NA
WP_012425694.1\|2843624_2843903_-	hypothetical protein	NA	NA	NA	NA
WP_012423275.1\|2844030_2845041_-	hypothetical protein	A0A2H4J048	uncultured_Caudovirales_phage	8.3e-61	39.3
WP_012424945.1\|2845053_2846553_-\|portal	phage portal protein	D9ZNC8	Clostridium_phage	9.5e-138	53.7
WP_012425869.1\|2846552_2847905_-\|terminase	PBSX family phage terminase large subunit	A0A2P1JTW5	Anoxybacillus_phage	3.4e-142	65.7
WP_012422643.1\|2847907_2848807_-\|terminase	terminase	A0A0A7RTY1	Clostridium_phage	6.9e-43	41.2
WP_012423560.1\|2848844_2848994_-	hypothetical protein	NA	NA	NA	NA
WP_012423432.1\|2848999_2849167_-	hypothetical protein	NA	NA	NA	NA
WP_012423205.1\|2849246_2849549_-\|coat	spore coat protein	NA	NA	NA	NA
WP_012425224.1\|2849553_2849769_-	hypothetical protein	NA	NA	NA	NA
WP_012424356.1\|2849869_2850418_-\|coat	spore coat protein	NA	NA	NA	NA
WP_012423020.1\|2850444_2851116_-	manganese catalase family protein	NA	NA	NA	NA
WP_012422918.1\|2851204_2851576_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_012424903.1\|2851821_2852016_-	alpha/beta-type small acid-soluble spore protein	G3MAF8	Bacillus_virus	1.1e-06	46.4
WP_012424001.1\|2852458_2852728_-	hypothetical protein	NA	NA	NA	NA
WP_012422642.1\|2852911_2853445_-	transcriptional regulator	NA	NA	NA	NA
WP_012425242.1\|2853462_2853933_-	hypothetical protein	NA	NA	NA	NA
WP_012425671.1\|2854103_2854412_-	hypothetical protein	NA	NA	NA	NA
WP_012423281.1\|2854499_2854988_-	hypothetical protein	D9ZNH9	Clostridium_phage	4.2e-18	35.7
WP_012424716.1\|2854981_2855131_-	hypothetical protein	NA	NA	NA	NA
WP_012425674.1\|2855142_2855856_-	hypothetical protein	A0A0A7RVQ9	Clostridium_phage	1.7e-36	38.7
WP_012425653.1\|2855945_2856977_-	nucleoid-associated protein	NA	NA	NA	NA
WP_012424710.1\|2856996_2858004_-\|integrase	tyrosine-type recombinase/integrase	U5JA40	Bacillus_phage	8.4e-05	28.8
WP_012425199.1\|2858115_2858304_-	hypothetical protein	NA	NA	NA	NA
WP_012422815.1\|2858333_2859356_-	phosphoadenosine phosphosulfate reductase family protein	F8UBB2	Clostridium_phage	1.3e-69	43.9
WP_012423226.1\|2859425_2859620_-	hypothetical protein	NA	NA	NA	NA
WP_012424152.1\|2859660_2860212_-	hypothetical protein	NA	NA	NA	NA
WP_012422652.1\|2860253_2860697_-	DUF3850 domain-containing protein	J9QD24	Clostridium_phage	3.5e-16	54.7
WP_012423569.1\|2860713_2861439_-	hypothetical protein	NA	NA	NA	NA
WP_012424752.1\|2861497_2861920_-	single-stranded DNA-binding protein	A0A290GHL8	Caldibacillus_phage	1.1e-27	61.2
WP_012425689.1\|2861912_2862206_-	hypothetical protein	Q0SPI4	Clostridium_phage	3.6e-09	37.2
WP_012423321.1\|2862313_2862934_-	HNH endonuclease	A0A1S5SBU7	Streptococcus_phage	3.1e-34	43.8
WP_012424275.1\|2862937_2863171_-	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	7.1e-16	61.3
WP_012425252.1\|2863183_2863636_-	hypothetical protein	NA	NA	NA	NA
WP_012422804.1\|2863656_2863956_-	hypothetical protein	NA	NA	NA	NA
WP_012423721.1\|2863964_2864273_-	hypothetical protein	NA	NA	NA	NA
WP_012424694.1\|2864269_2864548_-	hypothetical protein	NA	NA	NA	NA
WP_012425726.1\|2865362_2866073_-	MBL fold metallo-hydrolase	A0A1L2JY21	Aeribacillus_phage	6.4e-52	44.3
WP_012423680.1\|2866072_2866816_-	hypothetical protein	A0A2I7RZ22	Vibrio_phage	1.2e-43	44.0
WP_012423048.1\|2866815_2868786_-	AAA family ATPase	A0A1L2K2K3	Aeribacillus_phage	6.3e-65	30.3
WP_012425611.1\|2868882_2869041_-	hypothetical protein	NA	NA	NA	NA
WP_012424899.1\|2869053_2869236_-	hypothetical protein	A0A2I6QR06	Streptococcus_phage	1.4e-06	44.9
WP_012423355.1\|2869352_2869541_-	hypothetical protein	NA	NA	NA	NA
WP_012424334.1\|2869550_2869712_-	hypothetical protein	NA	NA	NA	NA
WP_012423631.1\|2869883_2870030_-	hypothetical protein	NA	NA	NA	NA
WP_012423493.1\|2870142_2870355_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012422802.1\|2870355_2871099_-	phage antirepressor Ant	A0A2D1GQG9	Lysinibacillus_phage	9.5e-38	37.6
WP_012425857.1\|2871245_2871464_-	DUF739 family protein	Q6SEF5	Lactobacillus_prophage	2.0e-12	48.6
WP_012423472.1\|2871628_2872012_+	transcriptional regulator	Q6R857	Staphylococcus_virus	2.0e-15	50.0
WP_012423992.1\|2872180_2872663_+	ImmA/IrrE family metallo-endopeptidase	A0A141VTQ3	Staphylococcus_phage	5.0e-24	42.5
WP_012423159.1\|2872709_2873906_+\|integrase	site-specific integrase	A0A2I7SCV1	Paenibacillus_phage	1.0e-70	39.2
2875823:2875841	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3398330 : 3408680

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012425464.1\|3398330_3401651_-	glycosyltransferase	R9S8I6	Prochlorococcus_phage	2.5e-05	23.2
WP_012424548.1\|3401650_3402871_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-13	28.8
WP_041712297.1\|3402887_3404264_-	ABC transporter permease	NA	NA	NA	NA
WP_012424446.1\|3404271_3405114_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.7e-38	37.9
WP_012423850.1\|3405126_3406095_-	glycosyltransferase	NA	NA	NA	NA
WP_012424996.1\|3406081_3407101_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.5e-78	45.2
WP_012425702.1\|3407217_3407757_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	8.6e-41	46.9
WP_012425432.1\|3407801_3408680_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.5e-100	61.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_010680

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_010680_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010680_1

14087-14213

Orphan

Consensus_repeat	Method
ATGTAGATTTAAGAAATGCAAATTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NC_010680_1

>merge|NC_010680|1|14087-14213|CRISPRCasFinder
AATTAGATTTAAGCAATAAGGATTTACAAGGAATGAAATTCTTAAATGTAGATTTAAGAAATGCAAATTTTAAAAATGCAGATTTAAGAGATTGTGTTATATATGCAGATTTAAGAAATGCAAATTT

>NC_010680|1|1|14087-14213|CRISPRCasFinder
AATTAGATTTAAGCAATAAGGATTT	ACAAGGAATGAAATTCTTAA
ATGTAGATTTAAGAAATGCAAATTT	TAAAAATGCAGATTTAAGAGATTGTGTTATAT
ATGCAGATTTAAGAAATGCAAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010680.1\|WP_012431089.1\|16397_16556_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431081.1\|18381_18597_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431076.1\|18670_18958_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431088.1\|8372_9053_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431105.1\|14990_15341_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431077.1\|3240_5376_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431093.1\|6457_8371_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274279
NC_010680.1\|WP_012431069.1\|12101_13241_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375981
NC_010680.1\|WP_012431068.1\|10301_11114_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274009
NC_010680.1\|WP_012431079.1\|15354_15705_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|366099
NC_010680.1\|WP_012431087.1\|15906_16317_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431106.1\|17175_17490_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431082.1\|5763_6402_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431064.1\|11677_12088_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381052
NC_010680.1\|WP_012431072.1\|16571_16883_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_041712655.1\|14452_14968_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431112.1\|18048_18285_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431092.1\|11396_11672_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431073.1\|5376_5652_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375135
NC_010680.1\|WP_012431084.1\|9113_10283_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|366353

Protein	Function_ID	Function_description	E-value
NC_010680.1\|WP_012431064.1\|11677_12088_+\|hypothetical-protein	gnl\|CDD\|381052	cd19586, serpin_mimivirus, serpin-like proteins found in mimiviruses. These viral serpins are from Mimiviridae (Tupanvirus, Powai, Bandra, Moumouvirus, and Megavirus) and may represent a new clade of viral serpins. Mimiviridae are thought to have a common evolutionary origin with Poxviridae whose viral serpins are classified into clades N and O. N is composed of viral serpin-1 (SPI-1-like) and viral serpin-2 (SPI-2-like) serpins and clade O is made up of viral serpin-3 (SPI-3-like) serpins. Mimiviruses have the only known viral serpins outside of the poxvirus family. SERine Proteinase INhibitors (serpins) exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants have been associated with blood clotting disorders, emphysema, cirrhosis, and dementia. A classification based on evolutionary relatedness has resulted in the assignment of serpins to 16 clades designated A-P along with some orphans.	0.00407266
NC_010680.1\|WP_012431079.1\|15354_15705_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|366099	pfam00436, SSB, Single-strand binding protein family. This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.	2.46475e-38
NC_010680.1\|WP_012431093.1\|6457_8371_+\|hypothetical-protein	gnl\|CDD\|274279	TIGR02746, hypothetical_protein, type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.	3.81901e-10
NC_010680.1\|WP_012431069.1\|12101_13241_+\|hypothetical-protein	gnl\|CDD\|375981	pfam18555, MobL, MobL relaxases. This family includes members of relaxase enzymes. These enzymes initiate bacterial conjugation contributing to the spread of antibiotic resistance. These MobL relaxases are found mainly in Firmicutes. It is suggested that MobL type relaxases play a prominent role in horizontal gene transfer in Firmicutes bacteria. Family members carry a stretch of relaxase motif III 'HUH' sequence that is characteristic of the HUH endonuclease superfamily essential for enzymatic activity.	1.18576e-128
NC_010680.1\|WP_012431068.1\|10301_11114_+\|hypothetical-protein	gnl\|CDD\|274009	TIGR02169, chromosome_segregation_protein_related_ptotein, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.000149548
NC_010680.1\|WP_012431073.1\|5376_5652_+\|hypothetical-protein	gnl\|CDD\|375135	pfam17332, pXO2-11, Uncharacterized protein pXO2-11. This is a protein of unknown function found in Firmicutes and predicted to contain 2 trans-membrane regions.	1.12294e-19
NC_010680.1\|WP_012431084.1\|9113_10283_+\|C40-family-peptidase	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	2.21627e-26

>NC_010680.1|WP_012431069.1|12101_13241_+|hypothetical-protein
MVGIVHKVRFVTSSSKKFKSYINYIARDEATRNNNFDKFSLYNDYMSNPEKSGSLFTSTKDWLDKKGTEQLKEVFEKSQENNSIMWQDVFSFDNEWLEKNGLYDSKTHTVDETKVRNAVRAAMEELKKNENLDGLVWSASLHYNTDNIHVHIASVEINPSRERGKRKPKTLINMKSKLLNNLIDRQAEYSKINDIIRKNIIEQRRDTDFFKDKEIKKMLKDIIKDLPEDHSLWKYNNNCMNDIRPKLDKLTKYYIENYKKDDYEELIKELNKGEKFLKESYGEGEKFRYKDYKENKINDLYTRMGNSILSELRINAKEKERLEARKKFVNNLRKNTNTNTLNIRNKDVNRIKNAMRDNVNHAKNQSIHRQLESEYEYFN
>NC_010680.1|WP_012431064.1|11677_12088_+|hypothetical-protein
MARKSKHFQLSEKNYAYLEELKEERQLKYLSDALDLVINEHRCKGDITTDYIIKLIVDKVSERIEEKFRGIKTASNSSDRNTKILLEMINGMFFKAKYGEIVTIAEDKSPALIIAENSVQKSIEGSRIKKLDSNFK
>NC_010680.1|WP_012431092.1|11396_11672_+|hypothetical-protein
MEIKVRDISKEAVIKIDGLAKKKGLSRNEYLKRHLENLSIMDKINDNEAKYTILIEKLTKILDYNTLALNKFLEENLFTLDELVQENSLKG
>NC_010680.1|WP_012431068.1|10301_11114_+|hypothetical-protein
MNEIERIVQRLQRNKLILHYFITGFLIVGLILFLNSNRLLNKKYNIINTDVNTNLVNQNLNVHLSKKEYNPNNRLIKFNIKVKLQIANQEIPIRTELVEKSNLGYKIPNNLVKVDKENYVIYATLPEKWTTVSLKVIEDIKDSNNPKFVKIYADSRDINIKNDLIEKKESELEIETIENEIESINQKINEKQSVIEEKKLLIEKEQCNLADMEKDKKYQTENEINETNTEIDNKRSTIEFTRLQIGKLEDESNELRNKISKLEVKKNDLR
>NC_010680.1|WP_012431084.1|9113_10283_+|C40-family-peptidase
MGFIKKFFKKILIAAIGFIFNFFLIVVTLMGACALLEHGGSSSNKHYYANLSGGGCPQEFVSYFNSTAQFFNIPNWVLAGVAKQESGFNPNDAYGGAYGIMQTQKYDFDGSDLWDGLMNCGLGNVYRSLGYNFNSSEDMWELFLTDPQVQIIAGAYEVRYYTNYVLYKKGMVSKLDYNNNENMALINWNADENDSQFREVLRRVFACYNGGPGYGMRVKLDKAQNDYPNKVFSYCMQFRGNGIPSGGGEGGLVGDNETIEKAINSGMSFVGNSPYCWGGGRTKDDIQAGIFDCSSFVHYCYSQAGIELGDYTSVTTYSLIGLGQKVDSSEMRRGDVIFFNTTGVNGHVAIYLGDNKFLHDGSSKGVSIGDLNNDYYKSTFNGEVRRIIQ
>NC_010680.1|WP_012431088.1|8372_9053_+|hypothetical-protein
MNKKNIIIVALLISFIFSFIYIGSKIFKKNDTNNDIATTNNVNEVKKNNINKEDIDEKESTESDLDKKIPVESGFKTTITGGDNEQEVIENNILLDNNSTSIQNKLEAKRVAENFVQAIVSFDINDKDGTVEKATKYVCKNKIDEVRSLYTNIGKSQDMKKTIITDLYSEEENKQENNEYLYFYVAVDVDLIDNYDQQVKGTGETYLVKLLKEDGQYKIIEYYFDE
>NC_010680.1|WP_012431093.1|6457_8371_+|hypothetical-protein
MGLKFWDNEVKNINHNPYLLSKIQPVGGIAFNPSSIRKGDGYEACIHLYEYQTTVNTFWLEQLLNFDDVVVTVDVSTANKQDALEQINRSISENLTRIDEVANNIDKIEASNTVDNLTSLVYDITSKDEIIKIVTIRYFISARTIDELDKKAKTILERLEGLGYRGAIFLNEQEYEWKSLFLSSTEQSKLPNKRNEKGIPSISFGGGYPFHFTELNDPTGMYLGTTKTGGNVIFDLFTKDDIRKSYNALVIGLMGSGKSTLLKKILNNNGIVNNTIRIFDIAGEFKTLVRILGGEVIALDGSDGIINPLQIFATIIDEDTNEILEEQSYMQHLSKVSMMYQFLAPNANSNEIREFEKSLSNFYSSFGIDTRKATQYETNEYPIMEELIEFLLNELYENVQKGILKANITNNRQERLENIILTLEGTVRDYGKLFNGHTTIKDITNKQIVSFEVRNLVQFDKRIFNAQTFNILTMLWNNALLQGLVEKKAFDEGRKTTMEAIKYLVLMDEAHKFINSNNIMAVDYLINFEREARKYFGGLIFATQSIRDVVPDNTSSEALEKIRTLFELTQYKFIMQQDNNSKKSLAEIFDGQLTESEIETVPFMGTGDCILSINGGKNIRFHIEASDKELELFKGGA
>NC_010680.1|WP_012431082.1|5763_6402_+|hypothetical-protein
MKKFLDITIKNEEPKKIKLNKEEKKELKEKRKKEKFEIKELKNEEKKVFKSTKELNPIADVNENDIFLTKDGYIDIYQVESKDIYAFNQYEADLHVYNFIAFLRNYLNDFKLISMNFPVNTSRQQEYIRNKLEQSTNEINNKFLQEKLDEFMFLEQYRNNKEFFIMFFAKNKQDITSSILKNQTRIFILKEISLEKKIKILFKLNNLNTKLI
>NC_010680.1|WP_012431073.1|5376_5652_+|hypothetical-protein
MDQYTIPKEISSEMKFSRKFYLFDIVILISSLSIAWLFSSMVYTKIIFFYYIFIFFGTVFLLMRNKFNPKKRNFQTVYFALKRDRTVYTRI
>NC_010680.1|WP_012431077.1|3240_5376_+|hypothetical-protein
MNGLLLSIEGTARLLHDNNITQIADVISIGFRWIGWRIIEFLSRIINTLEASATKLCTLNGFFNSTEVNTLINRYKPLVWMILGISIAIIGMKIIFNRVKNRGDLAPNLMFSVCVLILLPVMMLKIDTMSTLAIQDLNSYNISSANTIVKNNLHDIYYLDSVNYNLTGNKNNISANDILSIDINEKLDTDNISISHRKIFKNKIIKDSNGSSVMTKLKQGWFLYEQFYRYNLDFVVTLISLGAIGITLICISLKSVRLIFEIAVNKFLATLFAFADIESGKKLKAILKHIGSMFAVLVTMSVMLKFYVLFNSYLSRIESTNPFDDFTKVIVILGVSVAVIDGPNIIEQVFGIDAGLKSGLGVMVGGYGAARVVGGIGKGIAGEFKRMLSNPAEKLKNKVKSGISEKFAGNKDKSGAGNNNLANEMKSNNDKSSNKDKNLPTLQEQMNNKKNNNNEEKGSMKDLNDRNKPIDKAINNISNKDIDKPINDAIKNLNNKDNGKPIGEAMNNLNSKDNGKPMAEAMNNVNSKDNGKPIGEAMNNVNGKDNGKPIGEAMNNVNSKDNGKPISEAMNNVNSKGNGKPMAEAMNNVNSKDNVRPMVGAMNNVNNKDNGKPMAESMNNVNNKDNGNLINESTKKLENNKENTKSMNESMKKLENNKEKNNLINESINVSGSSKNSQVINSKKNESRMNQSVKNKNSAIANEFKENGGKK
>NC_010680.1|WP_041712655.1|14452_14968_+|hypothetical-protein
MKFLNNLNKDKKIIIVLSFLLLLVFAGYQTNSTIKNIKIKNLENEINELSLNIENSNRKVYAASNFTPNENIETENKEQKEVINIESNENDITPYRTIKERFIDIAKDIKKEYDESINDTEAISFETMDLSTLTDNQIKKTLEKLPNKKFNIKIEENKLGNNNFYKIILLQ
>NC_010680.1|WP_012431105.1|14990_15341_+|hypothetical-protein
MKKEDVYKFSQKVKLLLRSLEGVKIEGEDYKIEKIKSLYEELEIEIEKFSPTIKEEYSLRTKILYNQMLKSKKEYENIKKSNASKKLVQVALEDFKMSTLKYENSKKIRDSIKNIN
>NC_010680.1|WP_012431079.1|15354_15705_+|single-stranded-DNA-binding-protein
MNKVVLIGRLTKDPEVKFTQENGKAVTKITLAVDKYNSKSGQKEADFVPIVVWDKQAESIGNYMKKGSQIAISGRIQTRNYEEKDGTKRYVTEVIASEVQFLSRVNNVNSEDNESK
>NC_010680.1|WP_012431087.1|15906_16317_+|hypothetical-protein
MQMEEIKKLLTINKNWKEKFKGDLLDNLLEKCVDIEKYIDLITNEWMNIWISVTKDKEIRKIYYDFNKQIKELDIRRLKVEYEVIYNIYKYSKELEDSNNESTNNIENIIKWINIIDVNSLEELENALDEQIRYSL
>NC_010680.1|WP_012431089.1|16397_16556_+|hypothetical-protein
MNMPTIQELTQIGEVIIIWIKYMLMHLAVAMPIMFIVMKFLNVNKKFAKLLK
>NC_010680.1|WP_012431072.1|16571_16883_+|hypothetical-protein
MKILIDEKQYLEIMELLNMINREKATLLASFNLYLNDNERCLYENVKRENKKYLSLMKQLDKNKKNNIRKRLIAAVEKWIECEVTGDEAMTQIIELLEIKLTN
>NC_010680.1|WP_012431106.1|17175_17490_+|hypothetical-protein
MSIILISELMTKLNSNSFNREQLNIIEKYNNKDKKLFLTTICIVFASSIFDSIFRINLIFDIIDIVIIILSMLILIRYLYFKITMKKSLLIELQEIENKKMKIV
>NC_010680.1|WP_012431112.1|18048_18285_+|hypothetical-protein
MLIIIVIILYIGISLYSKHLLYIQSYARFKRELLYNREQNVKRVCNKSVKKIEWICFVPGINLITVLALSIMILIDKY
>NC_010680.1|WP_012431081.1|18381_18597_+|hypothetical-protein
MYNLINSLSNGDQKMFWLIFDLIVIATFHLIWFSYLFFKRKDSELQSIRKPLYYRSLQYILCICLGLLIAA
>NC_010680.1|WP_012431076.1|18670_18958_+|hypothetical-protein
MNKIIRVKVSKEIRNIIDLLSREKNKSKSQMLREILKIYKENNTTRNKNEVEDYSIIIHIPEKEGFTKEKYQKYADKITNDDIMIIINDLYNIQA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_010680_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010680_2

47075-47450

Orphan

Consensus_repeat	Method
GGAAAAATGCTTAATGGTTGGATTAATGATAATGGCAACTGGTATT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_010680_2

>merge|NC_010680|2|47075-47450|CRISPRCasFinder
GGAAAAGTTAAAACTGGTTGGGTTAACGATAATGGAAATTGGTATTATTTTGATTCATTTGGAGTAATGCAAACAGGATGGCAATGTATAGATAATGAATGGTATTACTTAAATCCTGTTGCTGGACAAGGGTTAGGAGCTATGCAAACAAAATGGATTAATGATAATGGCAACTGGTATTTCTGTAATGATAGTGGAAAAATGCTTAATGGTTGGATTAATGATAATGGCAACTGGTATTTCTGTAATGATAGTGGAAAAATGCTTAATGGTTGGATTAATGATAATGGCAACTGGTATTATCTAAACCCTAAATCAGACGGAACTAAAGGAAAAATGCTTAATGGTTGGATTAATGATAATGGCAACTGGTATT

>NC_010680|2|2|47075-47450|CRISPRCasFinder
GGAAAAGTTAAAACTGGTTGGGTTAACGATAATGGAAATTGGTATT	ATTTTGATTCATTTGGAGTAATGCAAACAGGATGGCAATGTATAGATAATGAATGGTATTACTTAAATCCTGTTGCTGGACAAGGGTTA
GGAGCTATGCAAACAAAATGGATTAATGATAATGGCAACTGGTATT	TCTGTAATGATAGTGGAAAAATGCTTAATGGTTGGATTAATGATAATGGCAACTGGTATTTCTGTAATGATAGT
GGAAAAATGCTTAATGGTTGGATTAATGATAATGGCAACTGGTATT	ATCTAAACCCTAAATCAGACGGAACTAAA
GGAAAAATGCTTAATGGTTGGATTAATGATAATGGCAACTGGTATT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010680.1\|WP_035784561.1\|39833_40055_-\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431108.1\|40569_41277_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NC_010680.1\|WP_012431102.1\|42428_42941_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431065.1\|39430_39790_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431107.1\|41746_42109_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431109.1\|41437_41674_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NC_010680.1\|WP_012431085.1\|38544_39438_+\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NC_010680.1\|WP_012431080.1\|42119_42332_+\|hypothetical-protein	unknown	unknown	unknown
NC_010680.1\|WP_012431070.1\|40260_40515_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NC_010680.1\|WP_012431074.1\|37527_38298_+\|transglutaminase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376628

Protein	Function_ID	Function_description	E-value
NC_010680.1\|WP_012431109.1\|41437_41674_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	5.23973e-06
NC_010680.1\|WP_012431108.1\|40569_41277_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.76328e-11
NC_010680.1\|WP_012431085.1\|38544_39438_+\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	5.30194e-38
NC_010680.1\|WP_012431070.1\|40260_40515_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.64988e-11
NC_010680.1\|WP_012431074.1\|37527_38298_+\|transglutaminase-domain-containing-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.05458e-14

>NC_010680.1|WP_012431102.1|42428_42941_+|hypothetical-protein
MKKKLIAGVLATATVVGGVIPTTAFADVKEADNQIIIEEVQNVLPVIESESTTGSAIKIENDDKNLENEDIDEIQDLNQNEEIIVDEQQEIGISEVKELKATIDENITIGEKVNVKVIGFNATGEEIKLDKEKISYKWFADKEIVGNNDYLNITDDMANREISCRVDYRN
>NC_010680.1|WP_012431080.1|42119_42332_+|hypothetical-protein
MLKFRRKDVNLMFFKDIKVKHGIYVGIAPKGEQVIFNKFNRNNQGNSLTIGVPGRGSEFNMTTKFINTND
>NC_010680.1|WP_012431107.1|41746_42109_+|hypothetical-protein
MLDKKKVRLDKKEVKNLFVAGYIASEIADILKAKVDTVKKCIDRNFKIEEVLSIHKEKRRIKKDIKRVISNTSNRYMGTEQLIKYNRSSFNMNKNGVLVYNNDHGLAPVDLPQRFKPVLG
>NC_010680.1|WP_012431109.1|41437_41674_+|helix-turn-helix-transcriptional-regulator
MSSQFKKNRKNKLIDLRVKNNLSRSYVADKIGTSEDCIARIENSKQKIILDEHAVRLAKVYRVSLDDIYVASIQKSEL
>NC_010680.1|WP_012431108.1|40569_41277_+|helix-turn-helix-domain-containing-protein
MKGNVLIFSKNLKKLRTFNKMKQEDLAVKIGVARSNISYYETQKSEPTLTPLINIANIFNVTINELVTVELTDDIIQEKNQQQDNITKVFSSSEIFSKNLKELRIGKNMYQIELAKEVKTSKSNISFYESGRSEPTLGVLMRICDFFNIKLSELVSKDLKPTEWIKSESDFIKKISYDLESVENKDENFLKFLYELKEYYLNQSKRLEELVQIKIPAKLKEIDNIIEFVKEKRNE
>NC_010680.1|WP_012431070.1|40260_40515_+|helix-turn-helix-transcriptional-regulator
MNLIKKQRIKNKISQVELANLCKVKQSQISRIETNKELPSAKLIVKLATNLNLCPSDVFSFFYENNKCDFSENDKCNSNKNEKV
>NC_010680.1|WP_035784561.1|39833_40055_-|hypothetical-protein
MLKDFTNIITSNEAYLELDKNIFNVLNLIKKHIPDEKIFLLEKLENLYNMQEGIGEELIYRQGILDGAKLSKQ
>NC_010680.1|WP_012431065.1|39430_39790_+|hypothetical-protein
MTNNQNSAKEKKRDLKPVSFNYDNERDVKLLEYAQKAGMKFGTYVKFLIEKEMNGSNNNNLDINSIANAINQLTKVIESKSFVTNSISSDNIDDKPKKLSDKDKETKNIISGILNMNSK
>NC_010680.1|WP_012431085.1|38544_39438_+|ParM/StbA-family-protein
MNIGIDLGNGYTKFKGKKFASKVKMGRLANFGEKNKEVHEVKYNNASYVVGEGQFFITDDRYFTNEYKICLLTAIALASNEIVIEANICVGLPVMKYMSDVKRRLEDHLNTIGAEKITVNGEEKIIHIKSVTVFVESALVVKDRSQGNEITIDIGAGTENIIQWENGVPVNFDTKNKSFYNLYNKISKYLKDVGKGDVSTEYIEKTLGQDEIIINQELVDIRDTHNIIEQHVRELASKIISEFDISRARRIRLMGGGGLPTYKYWKNIIEKVELADNAQFINSEIYETVLEMSGIND
>NC_010680.1|WP_012431074.1|37527_38298_+|transglutaminase-domain-containing-protein
MKSKLLKTIALTLISVNTIVYPIYAAEVPKFSNLNDVEENIYTHLINRDSNINFIYTGSTREFKDNIVKTIKAAYSKDDYTERSWLEIKPNVNISDGKINTSINFEYLTNKEQEEFIDIEIKKITDKLINDKMSDFEKVKAINDYLANRYEYDYTLSSSNVYSALITNYTVCQGYSLTAYKMLKNAGIESRIGVGTNKGASHSWNIVKIEDSWYHLDITNNDSTRSNKYFLVSDKFLEDNNYKWNRTEYPEALNNK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010680_1	1.1\|14112\|20\|NC_010680\|CRISPRCasFinder	14112-14131	20	NZ_KT901798	Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence	30644-30663	0	1.0
NC_010680_1	1.1\|14112\|20\|NC_010680\|CRISPRCasFinder	14112-14131	20	NZ_KJ776576	Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence	27660-27679	0	1.0
NC_010680_1	1.1\|14112\|20\|NC_010680\|CRISPRCasFinder	14112-14131	20	NZ_KJ776581	Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence	33675-33694	0	1.0
NC_010680_1	1.1\|14112\|20\|NC_010680\|CRISPRCasFinder	14112-14131	20	NC_018653	Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence	27643-27662	0	1.0
NC_010680_1	1.1\|14112\|20\|NC_010680\|CRISPRCasFinder	14112-14131	20	NC_010680	Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence	14112-14131	0	1.0
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	NZ_KT901798	Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence	39023-39054	0	1.0
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	NZ_KJ776576	Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence	27705-27736	0	1.0
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	NC_018653	Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence	27688-27719	0	1.0
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	NC_010680	Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence	14157-14188	0	1.0
NC_010680_2	2.3\|47376\|29\|NC_010680\|CRISPRCasFinder	47376-47404	29	NZ_KJ776576	Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence	13282-13310	0	1.0
NC_010680_2	2.3\|47376\|29\|NC_010680\|CRISPRCasFinder	47376-47404	29	NC_018653	Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence	13265-13293	0	1.0
NC_010680_2	2.3\|47376\|29\|NC_010680\|CRISPRCasFinder	47376-47404	29	NC_010680	Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence	47376-47404	0	1.0
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	NZ_KJ776581	Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence	33720-33751	1	0.969
NC_010680_2	2.3\|47376\|29\|NC_010680\|CRISPRCasFinder	47376-47404	29	NZ_KJ776585	Clostridium botulinum strain DB2 plasmid pDB2, complete sequence	13042-13070	1	0.966
NC_010680_2	2.3\|47376\|29\|NC_010680\|CRISPRCasFinder	47376-47404	29	NZ_KJ776583	Clostridium botulinum strain KapchunkaB3 plasmid pKAPB3, complete sequence	13051-13079	1	0.966
NC_010680_2	2.3\|47376\|29\|NC_010680\|CRISPRCasFinder	47376-47404	29	NZ_KJ776581	Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence	19123-19151	1	0.966
NC_010680_2	2.3\|47376\|29\|NC_010680\|CRISPRCasFinder	47376-47404	29	NZ_KJ776579	Clostridium botulinum strain KapchunkaB2 plasmid pKAPB2, complete sequence	13051-13079	1	0.966
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	NZ_KT901798	Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence	30689-30720	2	0.938
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	NZ_KJ776585	Clostridium botulinum strain DB2 plasmid pDB2, complete sequence	27461-27492	2	0.938
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	NZ_KJ776583	Clostridium botulinum strain KapchunkaB3 plasmid pKAPB3, complete sequence	27470-27501	2	0.938
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	NZ_KJ776579	Clostridium botulinum strain KapchunkaB2 plasmid pKAPB2, complete sequence	27470-27501	2	0.938
NC_010680_2	2.3\|47376\|29\|NC_010680\|CRISPRCasFinder	47376-47404	29	NZ_KT901798	Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence	16240-16268	2	0.931
NC_010680_2	2.3\|47376\|29\|NC_010680\|CRISPRCasFinder	47376-47404	29	NZ_KT901798	Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence	16165-16193	3	0.897
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	NZ_CP024873	Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence	92245-92276	8	0.75
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	LR214957	Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 3	13692-13723	9	0.719
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	NZ_LR215006	Mycoplasma conjunctivae strain NCTC10147 plasmid 10	8258-8289	9	0.719
NC_010680_1	1.2\|14157\|32\|NC_010680\|CRISPRCasFinder	14157-14188	32	MH598801	Pelagibacter phage HTVC200P, complete genome	27397-27428	9	0.719
NC_010680_2	2.2\|47256\|74\|NC_010680\|CRISPRCasFinder	47256-47329	74	NZ_KJ776576	Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence	13162-13235	14	0.811
NC_010680_2	2.2\|47256\|74\|NC_010680\|CRISPRCasFinder	47256-47329	74	NZ_KJ776576	Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence	13222-13295	14	0.811
NC_010680_2	2.2\|47256\|74\|NC_010680\|CRISPRCasFinder	47256-47329	74	NC_018653	Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence	13145-13218	14	0.811
NC_010680_2	2.2\|47256\|74\|NC_010680\|CRISPRCasFinder	47256-47329	74	NC_018653	Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence	13205-13278	14	0.811
NC_010680_2	2.2\|47256\|74\|NC_010680\|CRISPRCasFinder	47256-47329	74	NC_010680	Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence	47256-47329	14	0.811
NC_010680_2	2.2\|47256\|74\|NC_010680\|CRISPRCasFinder	47256-47329	74	NC_010680	Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence	47316-47389	14	0.811
NC_010680_2	2.2\|47256\|74\|NC_010680\|CRISPRCasFinder	47256-47329	74	NZ_KJ776576	Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence	13297-13370	26	0.649
NC_010680_2	2.2\|47256\|74\|NC_010680\|CRISPRCasFinder	47256-47329	74	NC_018653	Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence	13280-13353	26	0.649
NC_010680_2	2.2\|47256\|74\|NC_010680\|CRISPRCasFinder	47256-47329	74	NC_010680	Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence	47391-47464	26	0.649
NC_010680_2	2.2\|47256\|74\|NC_010680\|CRISPRCasFinder	47256-47329	74	NZ_KT901798	Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence	16255-16328	26	0.649
NC_010680_2	2.1\|47121\|89\|NC_010680\|CRISPRCasFinder	47121-47209	89	NZ_KT901798	Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence	15970-16058	29	0.674
NC_010680_2	2.1\|47121\|89\|NC_010680\|CRISPRCasFinder	47121-47209	89	NZ_KJ776576	Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence	13027-13115	29	0.674
NC_010680_2	2.1\|47121\|89\|NC_010680\|CRISPRCasFinder	47121-47209	89	NC_018653	Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence	13010-13098	29	0.674
NC_010680_2	2.1\|47121\|89\|NC_010680\|CRISPRCasFinder	47121-47209	89	NC_010680	Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence	47121-47209	29	0.674
NC_010680_2	2.1\|47121\|89\|NC_010680\|CRISPRCasFinder	47121-47209	89	NZ_KJ776581	Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence	18853-18941	30	0.663

1. spacer 1.1|14112|20|NC_010680|CRISPRCasFinder matches to NZ_KT901798 (Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence) position: , mismatch: 0, identity: 1.0

acaaggaatgaaattcttaa	CRISPR spacer
acaaggaatgaaattcttaa	Protospacer
********************

2. spacer 1.1|14112|20|NC_010680|CRISPRCasFinder matches to NZ_KJ776576 (Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence) position: , mismatch: 0, identity: 1.0

acaaggaatgaaattcttaa	CRISPR spacer
acaaggaatgaaattcttaa	Protospacer
********************

3. spacer 1.1|14112|20|NC_010680|CRISPRCasFinder matches to NZ_KJ776581 (Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence) position: , mismatch: 0, identity: 1.0

acaaggaatgaaattcttaa	CRISPR spacer
acaaggaatgaaattcttaa	Protospacer
********************

4. spacer 1.1|14112|20|NC_010680|CRISPRCasFinder matches to NC_018653 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence) position: , mismatch: 0, identity: 1.0

acaaggaatgaaattcttaa	CRISPR spacer
acaaggaatgaaattcttaa	Protospacer
********************

5. spacer 1.1|14112|20|NC_010680|CRISPRCasFinder matches to NC_010680 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence) position: , mismatch: 0, identity: 1.0

acaaggaatgaaattcttaa	CRISPR spacer
acaaggaatgaaattcttaa	Protospacer
********************

6. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to NZ_KT901798 (Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence) position: , mismatch: 0, identity: 1.0

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
taaaaatgcagatttaagagattgtgttatat	Protospacer
********************************

7. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to NZ_KJ776576 (Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence) position: , mismatch: 0, identity: 1.0

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
taaaaatgcagatttaagagattgtgttatat	Protospacer
********************************

8. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to NC_018653 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence) position: , mismatch: 0, identity: 1.0

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
taaaaatgcagatttaagagattgtgttatat	Protospacer
********************************

9. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to NC_010680 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence) position: , mismatch: 0, identity: 1.0

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
taaaaatgcagatttaagagattgtgttatat	Protospacer
********************************

10. spacer 2.3|47376|29|NC_010680|CRISPRCasFinder matches to NZ_KJ776576 (Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence) position: , mismatch: 0, identity: 1.0

atctaaaccctaaatcagacggaactaaa	CRISPR spacer
atctaaaccctaaatcagacggaactaaa	Protospacer
*****************************

11. spacer 2.3|47376|29|NC_010680|CRISPRCasFinder matches to NC_018653 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence) position: , mismatch: 0, identity: 1.0

atctaaaccctaaatcagacggaactaaa	CRISPR spacer
atctaaaccctaaatcagacggaactaaa	Protospacer
*****************************

12. spacer 2.3|47376|29|NC_010680|CRISPRCasFinder matches to NC_010680 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence) position: , mismatch: 0, identity: 1.0

atctaaaccctaaatcagacggaactaaa	CRISPR spacer
atctaaaccctaaatcagacggaactaaa	Protospacer
*****************************

13. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to NZ_KJ776581 (Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence) position: , mismatch: 1, identity: 0.969

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
caaaaatgcagatttaagagattgtgttatat	Protospacer
.*******************************

14. spacer 2.3|47376|29|NC_010680|CRISPRCasFinder matches to NZ_KJ776585 (Clostridium botulinum strain DB2 plasmid pDB2, complete sequence) position: , mismatch: 1, identity: 0.966

atctaaaccctaaatcagacggaactaaa	CRISPR spacer
atctaaatcctaaatcagacggaactaaa	Protospacer
*******.*********************

15. spacer 2.3|47376|29|NC_010680|CRISPRCasFinder matches to NZ_KJ776583 (Clostridium botulinum strain KapchunkaB3 plasmid pKAPB3, complete sequence) position: , mismatch: 1, identity: 0.966

atctaaaccctaaatcagacggaactaaa	CRISPR spacer
atctaaatcctaaatcagacggaactaaa	Protospacer
*******.*********************

16. spacer 2.3|47376|29|NC_010680|CRISPRCasFinder matches to NZ_KJ776581 (Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence) position: , mismatch: 1, identity: 0.966

atctaaaccctaaatcagacggaactaaa	CRISPR spacer
atctaaatcctaaatcagacggaactaaa	Protospacer
*******.*********************

17. spacer 2.3|47376|29|NC_010680|CRISPRCasFinder matches to NZ_KJ776579 (Clostridium botulinum strain KapchunkaB2 plasmid pKAPB2, complete sequence) position: , mismatch: 1, identity: 0.966

atctaaaccctaaatcagacggaactaaa	CRISPR spacer
atctaaatcctaaatcagacggaactaaa	Protospacer
*******.*********************

18. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to NZ_KT901798 (Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence) position: , mismatch: 2, identity: 0.938

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
caaaaatgcagatttaagagattgtgtcatat	Protospacer
.**************************.****

19. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to NZ_KJ776585 (Clostridium botulinum strain DB2 plasmid pDB2, complete sequence) position: , mismatch: 2, identity: 0.938

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
cagaaatgcagatttaagagattgtgttatat	Protospacer
.*.*****************************

20. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to NZ_KJ776583 (Clostridium botulinum strain KapchunkaB3 plasmid pKAPB3, complete sequence) position: , mismatch: 2, identity: 0.938

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
cagaaatgcagatttaagagattgtgttatat	Protospacer
.*.*****************************

21. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to NZ_KJ776579 (Clostridium botulinum strain KapchunkaB2 plasmid pKAPB2, complete sequence) position: , mismatch: 2, identity: 0.938

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
cagaaatgcagatttaagagattgtgttatat	Protospacer
.*.*****************************

22. spacer 2.3|47376|29|NC_010680|CRISPRCasFinder matches to NZ_KT901798 (Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence) position: , mismatch: 2, identity: 0.931

atctaaaccctaaatcagacggaactaaa	CRISPR spacer
atttaaatcctaaatcagacggaactaaa	Protospacer
**.****.*********************

23. spacer 2.3|47376|29|NC_010680|CRISPRCasFinder matches to NZ_KT901798 (Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence) position: , mismatch: 3, identity: 0.897

atctaaaccctaaatcagacggaactaaa	CRISPR spacer
atctaaaccctgaatcagatggaactaga	Protospacer
***********.*******.*******.*

24. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to NZ_CP024873 (Leptospira mayottensis 200901116 plasmid p1_L200901116, complete sequence) position: , mismatch: 8, identity: 0.75

taaaaatgcagatttaagagatt------gtgttatat	CRISPR spacer
taaaaatgcagatttaggatatttaaggggtg------	Protospacer
****************.** ***      ***

25. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to LR214957 (Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 3) position: , mismatch: 9, identity: 0.719

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
tgaaaatgcagaattaagagatggtaaattca	Protospacer
*.********** ********* **.   *

26. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to NZ_LR215006 (Mycoplasma conjunctivae strain NCTC10147 plasmid 10) position: , mismatch: 9, identity: 0.719

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
tgaaaatgcagaattaagagatggtaaattca	Protospacer
*.********** ********* **.   *

27. spacer 1.2|14157|32|NC_010680|CRISPRCasFinder matches to MH598801 (Pelagibacter phage HTVC200P, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatgcagatttaagagattgtgttatat	CRISPR spacer
taaaattgtagatttaagagattttaaaaata	Protospacer
***** **.************** *.  *

28. spacer 2.2|47256|74|NC_010680|CRISPRCasFinder matches to NZ_KJ776576 (Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence) position: , mismatch: 14, identity: 0.811

tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	CRISPR spacer
tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	Protospacer
************************************************************

29. spacer 2.2|47256|74|NC_010680|CRISPRCasFinder matches to NZ_KJ776576 (Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence) position: , mismatch: 14, identity: 0.811

tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	CRISPR spacer
tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	Protospacer
************************************************************

30. spacer 2.2|47256|74|NC_010680|CRISPRCasFinder matches to NC_018653 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence) position: , mismatch: 14, identity: 0.811

tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	CRISPR spacer
tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	Protospacer
************************************************************

31. spacer 2.2|47256|74|NC_010680|CRISPRCasFinder matches to NC_018653 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence) position: , mismatch: 14, identity: 0.811

tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	CRISPR spacer
tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	Protospacer
************************************************************

32. spacer 2.2|47256|74|NC_010680|CRISPRCasFinder matches to NC_010680 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence) position: , mismatch: 14, identity: 0.811

tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	CRISPR spacer
tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	Protospacer
************************************************************

33. spacer 2.2|47256|74|NC_010680|CRISPRCasFinder matches to NC_010680 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence) position: , mismatch: 14, identity: 0.811

tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	CRISPR spacer
tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	Protospacer
************************************************************

34. spacer 2.2|47256|74|NC_010680|CRISPRCasFinder matches to NZ_KJ776576 (Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence) position: , mismatch: 26, identity: 0.649

tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	CRISPR spacer
cagacggaactaaaggaaaaatgcttaatggttggattaatgataatggcaactggtatt	Protospacer
.  .... . **. **********************************************

35. spacer 2.2|47256|74|NC_010680|CRISPRCasFinder matches to NC_018653 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence) position: , mismatch: 26, identity: 0.649

tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	CRISPR spacer
cagacggaactaaaggaaaaatgcttaatggttggattaatgataatggcaactggtatt	Protospacer
.  .... . **. **********************************************

36. spacer 2.2|47256|74|NC_010680|CRISPRCasFinder matches to NC_010680 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence) position: , mismatch: 26, identity: 0.649

tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	CRISPR spacer
cagacggaactaaaggaaaaatgcttaatggttggattaatgataatggcaactggtatt	Protospacer
.  .... . **. **********************************************

37. spacer 2.2|47256|74|NC_010680|CRISPRCasFinder matches to NZ_KT901798 (Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence) position: , mismatch: 26, identity: 0.649

tctgtaatgatagtggaaaaatgcttaatggttggattaatgataatggcaactggtatt	CRISPR spacer
cagacggaactaaaggaaaaatgcttaatggttggattaatgataatggcaactggtatt	Protospacer
.  .... . **. **********************************************

38. spacer 2.1|47121|89|NC_010680|CRISPRCasFinder matches to NZ_KT901798 (Clostridium botulinum strain GA0702E1CS plasmid pGA0702E1CS, complete sequence) position: , mismatch: 29, identity: 0.674

attttgattcatttggagtaatgcaaacaggatggcaatgtatagataatgaatggtatt	CRISPR spacer
attttgattcatttggagtaatgcaaacaggatggcaatgtatagataatgaatggtatt	Protospacer
************************************************************

39. spacer 2.1|47121|89|NC_010680|CRISPRCasFinder matches to NZ_KJ776576 (Clostridium botulinum strain Eklund2B plasmid pEklund2B, complete sequence) position: , mismatch: 29, identity: 0.674

attttgattcatttggagtaatgcaaacaggatggcaatgtatagataatgaatggtatt	CRISPR spacer
attttgattcatttggagtaatgcaaacaggatggcaatgtatagataatgaatggtatt	Protospacer
************************************************************

40. spacer 2.1|47121|89|NC_010680|CRISPRCasFinder matches to NC_018653 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid p17BNRP, complete sequence) position: , mismatch: 29, identity: 0.674

attttgattcatttggagtaatgcaaacaggatggcaatgtatagataatgaatggtatt	CRISPR spacer
attttgattcatttggagtaatgcaaacaggatggcaatgtatagataatgaatggtatt	Protospacer
************************************************************

41. spacer 2.1|47121|89|NC_010680|CRISPRCasFinder matches to NC_010680 (Clostridium botulinum B str. Eklund 17B (NRP) plasmid pCLL, complete sequence) position: , mismatch: 29, identity: 0.674

attttgattcatttggagtaatgcaaacaggatggcaatgtatagataatgaatggtatt	CRISPR spacer
attttgattcatttggagtaatgcaaacaggatggcaatgtatagataatgaatggtatt	Protospacer
************************************************************

42. spacer 2.1|47121|89|NC_010680|CRISPRCasFinder matches to NZ_KJ776581 (Clostridium botulinum strain IFR_05/025 plasmid p05/025, complete sequence) position: , mismatch: 30, identity: 0.663

attttgattcatttggagtaatgcaaacaggatggcaatgtatagataatgaatggtatt	CRISPR spacer
attttgattcatttggagtaatgcaaacaggatggcaatatatagataatgaatggtatt	Protospacer
***************************************.********************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19905 : 32556

Clostridium_botulinum_D_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012431066.1\|19905_20178_+	hypothetical protein	A0A0K2SUH1	Clostridium_phage	8.5e-13	45.8
WP_012431098.1\|20881_22762_-	botulinum neurotoxin hemagglutinin HA70 subunit	Q786X9	Clostridium_botulinum_D_phage	4.3e-244	69.0
WP_012431100.1\|22775_23216_-	hemagglutinin	Q786Y1	Clostridium_botulinum_D_phage	2.5e-46	63.0
WP_012431090.1\|23278_24157_-	ricin-type beta-trefoil lectin domain protein	Q38196	Clostridium_botulinum_phage	4.8e-41	38.1
WP_012431103.1\|24383_24923_+	botulinum neurotoxin transcription-activating sigma factor BotR	Q9ZWV5	Clostridium_botulinum_D_phage	1.5e-37	50.8
WP_012431075.1\|25061_28655_+	non-toxic nonhemagglutinin NTNH	Q332E1	Clostridium_botulinum_C_phage	0.0e+00	68.4
WP_012431101.1\|28680_32556_+	botulinum neurotoxin type B	Q332E0	Clostridium_botulinum_C_phage	1.1e-180	32.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010674

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_010680

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection