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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_010723 Clostridium botulinum E3 str. Alaska E43, complete genome 7 crisprs cas3,csa3,DEDDh,WYL,DinG 1 3 6 0

Results visualization

1. NC_010723
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010723_1 376278-376375 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010723_2 1666820-1667108 Orphan II-B
4 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010723_3 1670802-1671031 Orphan II-B
3 spacers
WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010723_4 1753789-1754545 Orphan II-B
11 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010723_5 2225796-2225918 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010723_6 2731332-2731426 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_010723_7 3197282-3197365 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_010723_4 4.6|1754149|36|NC_010723|CRISPRCasFinder,CRT,PILER-CR 1754149-1754184 36 NC_010723.1 969909-969944 0 1.0

1. spacer 4.6|1754149|36|NC_010723|CRISPRCasFinder,CRT,PILER-CR matches to position: 969909-969944, mismatch: 0, identity: 1.0

tcaaacacttggagtttttacagatactataataat	CRISPR spacer
tcaaacacttggagtttttacagatactataataat	Protospacer
************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_010723_3 3.1|1670841|31|NC_010723|PILER-CR 1670841-1670871 31 KY653126 Staphylococcus phage IME1354_01, complete genome 7172-7202 6 0.806
NC_010723_3 3.2|1670911|27|NC_010723|PILER-CR 1670911-1670937 27 LC576631 Staphylococcus phage vB_SauH_DELF3 DNA, complete sequence 121434-121460 7 0.741
NC_010723_3 3.1|1670841|31|NC_010723|PILER-CR 1670841-1670871 31 MK936476 Staphylococcus phage SA46-CL1, complete genome 4739-4769 8 0.742
NC_010723_3 3.1|1670841|31|NC_010723|PILER-CR 1670841-1670871 31 MK764384 Staphylococcus phage SA46-CTH2, complete genome 4738-4768 8 0.742
NC_010723_3 3.1|1670841|31|NC_010723|PILER-CR 1670841-1670871 31 MK903033 Staphylococcus phage SA44-CTH7, complete genome 4739-4769 8 0.742
NC_010723_3 3.1|1670841|31|NC_010723|PILER-CR 1670841-1670871 31 KU878088 Bacillus phage AR9, complete genome 33657-33687 8 0.742
NC_010723_3 3.1|1670841|31|NC_010723|PILER-CR 1670841-1670871 31 NC_031008 Staphylococcus phage SLPW, complete genome 4489-4519 8 0.742
NC_010723_3 3.1|1670841|31|NC_010723|PILER-CR 1670841-1670871 31 KF926093 Lactococcus phage phiL47, complete genome 1301-1331 8 0.742
NC_010723_3 3.1|1670841|31|NC_010723|PILER-CR 1670841-1670871 31 NC_049857 Lactococcus phage P1048, complete genome 1300-1330 8 0.742
NC_010723_2 2.1|1666850|34|NC_010723|PILER-CR,CRISPRCasFinder,CRT 1666850-1666883 34 NZ_CP047113 Proteus mirabilis strain SCBX1.1 plasmid plas1.1.1, complete sequence 5294-5327 9 0.735
NC_010723_2 2.1|1666850|34|NC_010723|PILER-CR,CRISPRCasFinder,CRT 1666850-1666883 34 NZ_CP053900 Proteus mirabilis strain YPM35 plasmid pJPM35-2, complete sequence 24237-24270 9 0.735

1. spacer 3.1|1670841|31|NC_010723|PILER-CR matches to KY653126 (Staphylococcus phage IME1354_01, complete genome) position: , mismatch: 6, identity: 0.806

atagtatgtccatattgatttaatatatccc	CRISPR spacer
attggttgtccatagtgattgaatatatctc	Protospacer
** *  ******** ***** ********.*

2. spacer 3.2|1670911|27|NC_010723|PILER-CR matches to LC576631 (Staphylococcus phage vB_SauH_DELF3 DNA, complete sequence) position: , mismatch: 7, identity: 0.741

gaatttaggttggcaaatgaataaggt	CRISPR spacer
tgtgttaggatggcaaatgaataagta	Protospacer
 .  ***** ***************  

3. spacer 3.1|1670841|31|NC_010723|PILER-CR matches to MK936476 (Staphylococcus phage SA46-CL1, complete genome) position: , mismatch: 8, identity: 0.742

atagtatgtccatattgatttaatatatccc	CRISPR spacer
ttaatatctccatattgatttaataattgga	Protospacer
 **.*** *****************  *   

4. spacer 3.1|1670841|31|NC_010723|PILER-CR matches to MK764384 (Staphylococcus phage SA46-CTH2, complete genome) position: , mismatch: 8, identity: 0.742

atagtatgtccatattgatttaatatatccc	CRISPR spacer
ttaatatctccatattgatttaataattgga	Protospacer
 **.*** *****************  *   

5. spacer 3.1|1670841|31|NC_010723|PILER-CR matches to MK903033 (Staphylococcus phage SA44-CTH7, complete genome) position: , mismatch: 8, identity: 0.742

atagtatgtccatattgatttaatatatccc	CRISPR spacer
ttaatatctccatattgatttaataattgga	Protospacer
 **.*** *****************  *   

6. spacer 3.1|1670841|31|NC_010723|PILER-CR matches to KU878088 (Bacillus phage AR9, complete genome) position: , mismatch: 8, identity: 0.742

atagtatgtccatattgatttaatatatccc	CRISPR spacer
catctatgtccatgttgatttaataaatttc	Protospacer
    *********.*********** **..*

7. spacer 3.1|1670841|31|NC_010723|PILER-CR matches to NC_031008 (Staphylococcus phage SLPW, complete genome) position: , mismatch: 8, identity: 0.742

atagtatgtccatattgatttaatatatccc	CRISPR spacer
ttaatatctccatattgatttaataattgga	Protospacer
 **.*** *****************  *   

8. spacer 3.1|1670841|31|NC_010723|PILER-CR matches to KF926093 (Lactococcus phage phiL47, complete genome) position: , mismatch: 8, identity: 0.742

atagtatgtccatattgatttaatatatccc	CRISPR spacer
gtgatatttccatattgatttaatttaacta	Protospacer
.*..*** **************** ** *. 

9. spacer 3.1|1670841|31|NC_010723|PILER-CR matches to NC_049857 (Lactococcus phage P1048, complete genome) position: , mismatch: 8, identity: 0.742

atagtatgtccatattgatttaatatatccc	CRISPR spacer
gtgatatttccatattgatttaatttaacta	Protospacer
.*..*** **************** ** *. 

10. spacer 2.1|1666850|34|NC_010723|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047113 (Proteus mirabilis strain SCBX1.1 plasmid plas1.1.1, complete sequence) position: , mismatch: 9, identity: 0.735

tcatcacatacgttaaatatatttttaactacct	CRISPR spacer
actttgcatacggtaaaaatatttttaactatga	Protospacer
 * *..****** **** *************.  

11. spacer 2.1|1666850|34|NC_010723|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053900 (Proteus mirabilis strain YPM35 plasmid pJPM35-2, complete sequence) position: , mismatch: 9, identity: 0.735

tcatcacatacgttaaatatatttttaactacct	CRISPR spacer
actttgcatacggtaaaaatatttttaactatga	Protospacer
 * *..****** **** *************.  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 447565 : 500724 51 Clostridium_phage(23.08%) protease,coat,tRNA NA
DBSCAN-SWA_2 915696 : 937865 26 Clostridium_phage(75.0%) tail,plate NA
DBSCAN-SWA_3 1085533 : 1099287 11 Cyanophage(22.22%) NA NA
DBSCAN-SWA_4 1840695 : 1868604 34 Bacteriophage(28.57%) bacteriocin,tail,capsid,plate,tRNA NA
DBSCAN-SWA_5 1882422 : 1888962 11 Clostridium_phage(33.33%) NA NA
DBSCAN-SWA_6 2236542 : 2301359 70 Clostridium_phage(48.57%) portal,terminase,tail,capsid,protease,holin,integrase,head attL 2228775:2228792|attR 2307562:2307579
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage