CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_012026	Anaplasma marginale str. Florida, complete sequence	4 crisprs	NA	4	0	0	0

Cas Category Instructions

Results visualization

1. NC_012026

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CRISPR-Cas detection and classification

Crispr_ID: NC_012026_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012026_1

809204-809637

Orphan

Consensus_repeat	Method
CCACTCAGCATCTATAGCTT	PILER-CR

5 spacers

The CRISPR arrays of NC_012026_1

>merge|NC_012026|1|809204-809637|PILER-CR
CCATTCGGCATCTATATCGTTAAGCTCCTTCCTGAGTGATTCACGGGCTTGAGCAATTTCTTTTGCTTGGGCAATCCTAGGTGCCCATTCGGCATCTATAGCTTTGAGCTCCCTACTAAGCTCTATACGACCCTCTATGGTGCGAAGTGCCCTCCTGAGCTCAACCGCGTGTTGCGTCTCAGCATCTATAGCTTTGAGCTCCTTACTAAGCTCTATACTACCAATGATAGCGCGATATGCACTCTCGAGCCTAATCGCAGGTCTCCACTCAGCATCTATAGCTTTGAGCTCCTTCCTGAGTGATTCACGGACAATCACAGGCCTCCACTCAGCATCTATAGCGTCAAGCTCCTTACTAAGCTCTATACTACCAATGATAGCGCGAGATATATGCCAGAAGGTAATCGCGTGTTGCCACTCAGCATCTATAGCGT

>NC_012026|1|1|809204-809637|PILER-CR
CCATTCGGCATCTATATCGT	TAAGCTCCTTCCTGAGTGATTCACGGGCTTGAGCAATTTCTTTTGCTTGGGCAATCCTAGGTGCCCA
TTCGGCATCTATAGCTTTGA	GCTCCCTACTAAGCTCTATACGACCCTCTATGGTGCGAAGTGCCCTCCTGAGCTCAACCGCGTGTTGCGT
CTCAGCATCTATAGCTTTGA	GCTCCTTACTAAGCTCTATACTACCAATGATAGCGCGATATGCACTCTCGAGCCTAATCGCAGGTCTCCA
CTCAGCATCTATAGCTTTGA	GCTCCTTCCTGAGTGATTCACGGACAATCACAGGCCTCCA
CTCAGCATCTATAGCGTCAA	GCTCCTTACTAAGCTCTATACTACCAATGATAGCGCGAGATATATGCCAGAAGGTAATCGCGTGTTGCCA
CTCAGCATCTATAGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_012026.1\|WP_010265167.1\|803740_803917_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NC_012026.1\|WP_010267994.1\|807804_808704_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237228
NC_012026.1\|WP_010265225.1\|814750_814885_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NC_012026.1\|WP_010265186.1\|807306_807792_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NC_012026.1\|WP_035018003.1\|801729_802698_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_012026.1\|WP_148204084.1\|810035_810869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235461
NC_012026.1\|WP_012659034.1\|804130_805393_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_012026.1\|WP_010268058.1\|821535_821940_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NC_012026.1\|WP_012659041.1\|819168_821532_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_012026.1\|WP_181005430.1\|805587_806352_-\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|172732
NC_012026.1\|WP_010265240.1\|821980_823081_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NC_012026.1\|WP_010268053.1\|816640_818887_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NC_012026.1\|WP_010265227.1\|814824_815250_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|376392
NC_012026.1\|WP_012659039.1\|811761_812697_-\|hypothetical-protein	unknown	unknown	unknown
NC_012026.1\|WP_080510991.1\|801138_801600_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NC_012026.1\|WP_010267974.1\|800297_800966_-\|hypothetical-protein	unknown	unknown	unknown
NC_012026.1\|WP_029209884.1\|806351_807125_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_012026.1\|WP_010265232.1\|815262_816582_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NC_012026.1\|WP_010267981.1\|802697_803741_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NC_012026.1\|WP_012659037.1\|812874_813849_-\|appendage-associated-protein	unknown	unknown	gnl\|CDD\|223496

Protein	Function_ID	Function_description	E-value
NC_012026.1\|WP_010265167.1\|803740_803917_-\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	3.51939e-24
NC_012026.1\|WP_010267994.1\|807804_808704_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237228	PRK12847, ubiA, 4-hydroxybenzoate octaprenyltransferase.	8.78658e-136
NC_012026.1\|WP_010265225.1\|814750_814885_+\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	3.43039e-10
NC_012026.1\|WP_010265186.1\|807306_807792_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	3.68494e-56
NC_012026.1\|WP_035018003.1\|801729_802698_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	2.31576e-159
NC_012026.1\|WP_148204084.1\|810035_810869_-\|hypothetical-protein	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0.00179535
NC_012026.1\|WP_012659034.1\|804130_805393_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	1.01516e-169
NC_012026.1\|WP_010268058.1\|821535_821940_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	1.39197e-52
NC_012026.1\|WP_012659041.1\|819168_821532_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_012026.1\|WP_181005430.1\|805587_806352_-\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|172732	PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional.	0
NC_012026.1\|WP_010265240.1\|821980_823081_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.50761e-156
NC_012026.1\|WP_010268053.1\|816640_818887_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	4.58256e-53
NC_012026.1\|WP_080510991.1\|801138_801600_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	7.67976e-50
NC_012026.1\|WP_012659037.1\|812874_813849_-\|appendage-associated-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	6.04689e-05
NC_012026.1\|WP_029209884.1\|806351_807125_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	2.61734e-103
NC_012026.1\|WP_010265232.1\|815262_816582_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	9.78143e-61
NC_012026.1\|WP_010267981.1\|802697_803741_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	7.68934e-146
NC_012026.1\|WP_010265227.1\|814824_815250_+\|ribonuclease-P-protein-component	gnl\|CDD\|376392	pfam00825, Ribonuclease_P, Ribonuclease P.	3.94519e-16

>NC_012026.1|WP_010267994.1|807804_808704_-|4-hydroxybenzoate-octaprenyltransferase
MLLGRVKNLIKCHLPLPYFTLCRLQSVEITLLAAFPALASISIASSSIAKTLWLFVLSAVGAAIVRTAGCVINDIFDRKIDAKVRRTKNRPLASGALTVPQALKVLLLLVGIALGILLLTNAMTFYLSTFFAVGIVLYPLMKRYFSYPQFFLGFVFNCGVLIGSAMAANKLVLGSILLYIGCIFWTTAYDTIYACQDKEDDAILGLGSTAVKFGANTKRYIGRLYILTTTMWVSTGVISSLGAAYYVCMLGIAGIFYYQYAKSDFDSPSRCMYMFRINMYVGLLLFLGAFLGKIGIRFL
>NC_012026.1|WP_010265186.1|807306_807792_-|flavin-reductase-family-protein
MQLGDVSSELFRSCMGRFATGVTVVTTMDNCGVMHGVTVSSFNSVSLDPPLVLFSIEKTSSRFGVFSMCTQFVVNILGEHQADVSRNFAERNRKFWESYNFTVVDGMPVINGSIAYFYCTMHHLYDGGDHKIVVGRVLDCKILDDANPLLYYRGGYCRLNC
>NC_012026.1|WP_029209884.1|806351_807125_-|4-hydroxy-tetrahydrodipicolinate-reductase
MKIGIVGCLGRMGRIIVQEVVGTGGVELSGGVVRRGNGLVGEDMGAVLGCGHGAKITDSKEFLFDCSDVVIDFSSPECMLECVGIASEKRVPLVSGTTGVDERDFRTHAEKVPLLWSCNMSLGVTLLLELVKMAAAGFRGYDVEIRELHHRAKKDAPSGTSLMLGKAVAQGMGVELESQQHTFGFGCRRSGAVGFSVARGGGVIGDHAVMFLGDDEIVELQHRAIDRRVFARGAIKAACWLVGKPAGLYTMLDVLRA
>NC_012026.1|WP_181005430.1|805587_806352_-|phosphate-ABC-transporter-ATP-binding-protein
MSVSEVHAAVEGLNLWYGKKQILFDVNLDVYKREVTALIGPSGCGKSTFLRCFNRMNDFVPDCKVEGKIDIEGMDVHSPDTNVVLLRAKVGMVFQKPNPFPDSIYKNIAYGPKLHGLARNKRRLDDIVEESLRRVGLWDELGGRLKDSACKLSGGQQQRLCIARAIAVRPTMLLMDEPCSALDPVATGVVENLIKELKKNFTIVLVTHSVKQVREVSDRVAFFQEGRIVEHNTTKEVFKAPKSEEVKGYLADHL
>NC_012026.1|WP_012659034.1|804130_805393_+|tRNA-guanosine(34)-transglycosylase-Tgt
MYARLYQNFNFHVLLQHNRARVGVISTPHGVLYTPAFIFCATKAAIKSLDMKTVKECGTQIVLSNTYHLMLQPGAETVAALGGLHNMLGWKGPMLTDSGGYQIFSLGYGSVSEELKGKRRRANSSLIKIDESGAIFRSYINGQLHHLTPEKSMHIQRMLGADLVVVLDECTPFHTSYEYTAQSMHMSNRWALRSLEEFQKTADGTQALYCVIQGGVHSDLRRVSCEFANSSPFFGNAIGGSLGSHKQQMYDTVSLTTSLLDKSRPVHLLGIGNVCDILHGVMNGVDTFDCVYPTRIARHGAALVRPENRISPDREYVNLYNSKFARSLAPIEQDCGCYTCNHHSRGYLHHLLKAKELLAYTLITIHNVYFMNSLMQRVRRAIAGETLEQEYEYWLGKRGAAPDSASPQPPPSGKTPTAPR
>NC_012026.1|WP_010265167.1|803740_803917_-|50S-ribosomal-protein-L32
MAVPKRKKSKSRRNMHRSHLALSAANVVIDPTTGEYKLPHHVCLGGYYNGKQVTESKV
>NC_012026.1|WP_010267981.1|802697_803741_-|phosphate-acyltransferase-PlsX
MVRDSGACVSVALDAMGADLGPEVAIKGADLVLSGAVPCKHKVHLSIYGKESAVLPVLGKYKLVEKNSVFIDTPDAVLCDDRPSFALRHRRKSSMWCAIEDVKKGVVASAVSAGNTGALMAISRYLLGTLQGIDRPAIATVLPSRKGSFVALDLGANAECAPGLLFQFAIMGRAFARAVLGVEHPKVGLLNIGAEDTKGTYNIQEAFALMRDAKQDINFYGYVEAKEAFDGVADVVVADGFSGNIMLKTCEAVAGLTLHILKKEICSSLMGRAAMRILRSCYFKRTSGSALDVRSYNGAVLLGLNGIVVKSHGSADATAFAHAIKEAVCVISQGDMAKEMISEVSNG
>NC_012026.1|WP_035018003.1|801729_802698_-|ketoacyl-ACP-synthase-III
MRRSVFCGVGAFLPAKVITNDDLSLMVDTTDEWVFRRTGIKRRHVVEEGDTVSGMATKAAEIALEDAGVSASEVDLIIVATATPDKTMPSCATMVQGNLGCKNAAAFDINAACSGFLYALSIVDSMIKAGQANIALIIGSEAMSKVVDWTDRSTCVLFGDGAGAFVFKGQDETEKPGAGVMSTLLCADGSLGNVLYTNGGVASTGKAGYICMKGTVLFEHAVVKLSSAISALLESSALDVDSIDWFIPHQANVRIIDLVINRLGLSRDKVILSIDEHANTSSASIPLAMYEAKRAGRIKKGNLVLFAAIGAGITWGVSLLRL
>NC_012026.1|WP_080510991.1|801138_801600_+|nucleoside-deaminase
MMLSESPYMRLAMQEAVSSPAEVPVGAVVVDERGVVVSSKHNLTLRNSDPTAHAEMLAIREACLHLSTHVLDNCDMYVTLEPCAMCAYAISLSRIRRLYFGAYNAKCGGVEHGARVFRFCHHIPEVYGGFLERENAEILKSFFYKLRNQQHQP
>NC_012026.1|WP_010267974.1|800297_800966_-|hypothetical-protein
MIKKLLGLIPGSGIAGAALKGTAASVGLIASLLLFIKPVRRRVCRCLKNILLWPFRTLKKGLGHVWQALKKLLHKLLKAVDALLSAVRRLVAKIAGLFGYESSETSSEKSADEHDVDETLTDQEKYNIEKEDKLLKRDFSSAQKRDVADGGAKYESAAQIVGVAEPIGKWTKLVMSERQESLARLFNAGARGGDNGELPNGFWQMFVRMPSRFQGKYIARSR
>NC_012026.1|WP_148204084.1|810035_810869_-|hypothetical-protein
MRLRSAYRAIIGRIELRKELDAIDAEWRPVIARESLRKELDAIDAEWAPKIELSAELKAIDAEWRPAIRLRSAYRAIIGRWELSKELKAIDAEWAPVIKLRKELKAIDAEWAPVIKLRKELKAIDAEWRPRIAKAQEELAAQVRRELRAELNAIDTAWRFVIVCQTGQSMTKHTSSEQLDVELHATNSGNGMELTLKLQVQEGVELQSLEQVFCECADRCVAAINSLGTGRSRKCADPGLIDGQVATPSTALGQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_012659039.1|811761_812697_-|hypothetical-protein
MGCPVSRGGSPGCGRRIAEELRFFVVDREASMCGDSCNGGGDRQQRQELAAAARASLLCLGGVMQQHITAAKARAELRKELKAIDAEWRPVIARESLRKELKAIDAQWQHAITFLRISRAIIGSIELSKELKAIDAGWEPVIIHEAQKKKREREERVAQVRRELRAELRAIDAEWRLVIARESLRKELDAIDAECRHTIKLRKELKAIDAEWRPVIARESLRKELDAIDAEWAPRIARAELAAAADALKRAADKLQALGKMDTTSTPGTDLIGVVTTAIATLAAAGMQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_012659037.1|812874_813849_-|appendage-associated-protein
MGCPVSRGGSPGCGRRIAEELRLAEDARLRLALLGRCIVKGSPAQVRKELRAELKAIDAEWRPVIARESLRKELDAIDAEWQHAITFWHISRAIIGSIELSKELDAIDAEWRPVIVRESLRKELKAIDAEWRPAIRLESAYRAIIGSIELSKELKAIDAETQHAVELRRALRTIEGRIELSRELKAIDAEWAPRIAQAKEIAQARESLRKELNDIDAEWAPKIAQAKEIAQAKAELAAATDALKRAADKLQALGKMGTTSTPGTDLIGVVTTAVTTTLAGTQPAPGTDLVGVATPSTALGQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_010265225.1|814750_814885_+|50S-ribosomal-protein-L34
MKRTFQPSRIVRKRRHGFRARMSTRWGRKILNRRRAKGRCLLCA
>NC_012026.1|WP_010265227.1|814824_815250_+|ribonuclease-P-protein-component
MGQKDSQQEACQGEVPFVRLKGVVTLKKRKEFARARFSGRSASSKGLLLQAVEDSAHPPGSDGLVRVGFTVSKKSGNSVVRNRIRRRLRVIAQDVISTSAARGFCYVFVSSSRLSETKLPVLRSSLVSCLKRLRLHVPVCD
>NC_012026.1|WP_010265232.1|815262_816582_+|sodium:alanine-symporter-family-protein
MGLLNTLLCIPAVAMLLFAGLRMSISSGWLQIRGLPLAISSLFAGERRKFSSVAAVCTILGGNLGVGNISGTAIALSSGGPGFIVWMVLIITVASIIKYANCYISTSTRVQAQNGKTFGGPVVYVKHAFGVKWAPCVVAFVTAVCAITVGNLVQVNSLAIPMSLMDLPPLAAGILVAFALFFVSALGMNFIAKTVSGMVPAMVLLYIALCFVVLVKCYDNILPSLTLILTSFLNLDSLKNGAALAFIAEILAVVQVGALRGIFATDIGLGLEGTVHSLVPNECDDKRFVAQQSLISLVSPFVVAIVAFVTTMVLLTTGVWSDAALESTNMCFTAFTSALGSGYVEYALLGLMFCFSFTTMLTWLMCSKEALLYVLGRDAYGKAWTAFFIAIAPLGSVCTVALLWDIADLAISLATIVNTIGMLVVASRYRDMFNVAHLR
>NC_012026.1|WP_010268053.1|816640_818887_-|ComEC/Rec2-family-competence-protein
MTFGLTVNAMQPEIGPFNIKKFWRLTIDALTSQACNFVIWIPALQAAGILLYFSLKHEPSFTLAALVACAMVALFLLTLINTRFLPLLIVAFGALGFISAHCRTALLFPKQPPISTFRRVYVNGATGLLKEINHKPGYAQLLVCDVESDKIQGICARLAARTAIDPTIRPGDILTFSGVIHPPPVSASKHGYDFARVAYFRGINAVGFTTSQVKLHERRSKVGFKEWVERIRDEIYARLVSGLRRDCAEIMAALLVGKRLGIRSEVLEDIRNSGLSHLFAISGLHLSFVAGISFMLTRNIFVLSETITLKHNIKKFAAVVAIIASFFYLLISGMPVSACRAFIMVTLTFVGIIVDKPNSVLRSISLAASIILLLTPETILLPSFQMSFAAVVALAGSCGVSRVVSAGSVVRYITAATSGSLIASIATAPYVVYHFNYFSVVGVVSNIIAIPLTAFVVIPLGLVYVITDCLLSGALVASPLEASVGLILYIAHYAAKVEWLAPTVRSIPPASVLFMTLGLLAFSWWRGTARIILGLLFALSGFLLALAYKTPDVLYGVGGVAVKEGDGQLYFAMRRGSTRGFSYSAWARENGQPKIINGGYFGQGKKLICMAGGCIYDSRVIISCDTEFILQRCSEADLVIHTGSGPRYPAPCSHVPHITYDDIRKLGAHYVSLSGSSVKVESARTRRPWHANAASFVQGKCAKCAARNRNAGDSTPFCNGLAIVTHSDNKLPVDRRRKVRVPADSIGP
>NC_012026.1|WP_012659041.1|819168_821532_-|phenylalanine--tRNA-ligase-subunit-beta
MRFAYSWLMDHLDTEWSASAVADELSRLGIEAELLHEGQDPAPFVVARVGAVKPHPSADKLKVCEVFDGADHMQVVCGASNVREGMLSVLARCGAVMPNGGPTIVEAVLRGVKSHGMLCSADELGVQGWRAQDSGILDLPSSDYEVGDSFFLSGAVIEVGVTPNRGDCLGLRGIARELVAAGVGALRPLPVDDLEVFGRSPIEAEMRSAGVLMGRYIKSIKNTGDSPRWIKDRLISAGVKTISCVVDIVNYVMLVLNRPMHVYDADKIQGGKLVVGASSNTDFHALDGKKYTLSKDNLVVTDGAGVVHCIAGVIGSTLSGCTLDSENIFLESAWYDPVDIAMSARKLKLSTDSSCRFERFTDPGCVKLGLDFASHMIVKYCGGVASDVVACGETPFSEGRVISFNPDSVGVIGSVEIEREEILRILTALGFDVNADKDRQWEVSVPSWRLADVRSSFDVVEEVLRMHGYDKVQEQPVVPCIAGPNGCNYDEKLSLIMLSAGLTEVVTWSFMSGAVAEKLGYSIEDLCVENPVSNKFDVMRPSLLPNLLQTAASNQACGCESVAIFELGEVYRFLDESERSICGVRSGDNVPRNPHGATRKFDFFDAKCDVLQVLTQLGIDGRLVEFRSCDRSYMHPARSADVYFRDILCGYVGELHPDLIGFFEMRSAAACFEIFLSRIPNVDDNPTGDEFLVHKYQPVKRDFAFVLDQGVQSQALVDVVGCIPGVAEVSVFDFYCGDNIPEGKVSIAVAVVMISKVGTMTESEIKDVSERIIALVAQKLGGELRAD
>NC_012026.1|WP_010268058.1|821535_821940_-|50S-ribosomal-protein-L17
MRHGISCRKFSRPTAHRLSMLANLAVSLIRHERIVTTVAKAKDLRPFVERLVTVGRRLAKKDPVRGRRLLLSKMGGDLDAVNKLLDVLAKRYARRPGGYTRILKNGFRAGDCAPIAIMEFVDRKEGEPKKVAEG
>NC_012026.1|WP_010265240.1|821980_823081_-|DNA-directed-RNA-polymerase-subunit-alpha
MAISDNGGGSVGLCYGSEFSISDHWDKLTRPSSIKVVGDGDLSRSAELIVEPLESGFALTLGNALRRVMMSSLRGFAVYGIEVEGVSHELTSLSGVREDVADLVLNLSMLRVKLLTSESRVLRLVAKGPGEITAAAIGDSEGCVVLNKDLHICTLGKDVDFSMKIYVNSGKGYVPASEYRAASRSGATSEVGPGFIATNALYSPVKKVAFRIESSRIGQFTDYDRLVISVETDGSISPDEAVAVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELELSVRSHNCLKNDNITYIGDLVQKTESDMLRTPNFGRKSLNEINEVLASMNLHLGMKVPNWPPESIENLSKQYSED

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Crispr_ID: NC_012026_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012026_2

811064-811225

Orphan

Consensus_repeat	Method
GCCCAATCACAGGTCTCCACTCAGCATCTATAGCGTCAAGCTCCTTCCTGA	PILER-CR

2 spacers

The CRISPR arrays of NC_012026_2

>merge|NC_012026|2|811064-811225|PILER-CR
GCCTAATCGCAGGTCTCCACTCAGCATCTATAGCTTTGAGCTCCGCACTAAGCTCAATCTTAGGTGCCCACTCAGCATCTATAGCGTCAAGCTCCTTCCTGAGTGATTCACGGGCAATCACAGGCCTCCACTCAGCATCTATAGCGTCAAGCTCCTTCCTGA

>NC_012026|2|2|811064-811225|PILER-CR
GCCTAATCGCAGGTCTCCACTCAGCATCTATAGCTTTGAGCTCCGCACTAA	GCTCAAT
CTTAGGTGCCCACTCAGCATCTATAGCGTCAAGCTCCTTCCTGAGTGATTC	ACGGGCAATCAC
AGGCCTCCACTCAGCATCTATAGCGTCAAGCTCCTTCCTGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_012026.1\|WP_010265167.1\|803740_803917_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NC_012026.1\|WP_010267994.1\|807804_808704_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237228
NC_012026.1\|WP_010265225.1\|814750_814885_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NC_012026.1\|WP_010268062.1\|823101_823476_-\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NC_012026.1\|WP_010265186.1\|807306_807792_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NC_012026.1\|WP_035018003.1\|801729_802698_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_012026.1\|WP_148204084.1\|810035_810869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235461
NC_012026.1\|WP_012659034.1\|804130_805393_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_012026.1\|WP_012659037.1\|808885_809860_-\|appendage-associated-protein	unknown	unknown	gnl\|CDD\|223496
NC_012026.1\|WP_010268058.1\|821535_821940_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NC_012026.1\|WP_012659041.1\|819168_821532_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_012026.1\|WP_181005430.1\|805587_806352_-\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|172732
NC_012026.1\|WP_010265240.1\|821980_823081_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NC_012026.1\|WP_010268053.1\|816640_818887_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NC_012026.1\|WP_012659039.1\|811761_812697_-\|hypothetical-protein	unknown	unknown	unknown
NC_012026.1\|WP_010267981.1\|802697_803741_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NC_012026.1\|WP_029209884.1\|806351_807125_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_012026.1\|WP_010265232.1\|815262_816582_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NC_012026.1\|WP_012659037.1\|812874_813849_-\|appendage-associated-protein	unknown	unknown	gnl\|CDD\|223496
NC_012026.1\|WP_010265227.1\|814824_815250_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|376392

Protein	Function_ID	Function_description	E-value
NC_012026.1\|WP_010265167.1\|803740_803917_-\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	3.51939e-24
NC_012026.1\|WP_010267994.1\|807804_808704_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237228	PRK12847, ubiA, 4-hydroxybenzoate octaprenyltransferase.	8.78658e-136
NC_012026.1\|WP_010265225.1\|814750_814885_+\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	3.43039e-10
NC_012026.1\|WP_010268062.1\|823101_823476_-\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.23464e-63
NC_012026.1\|WP_010265186.1\|807306_807792_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	3.68494e-56
NC_012026.1\|WP_035018003.1\|801729_802698_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	2.31576e-159
NC_012026.1\|WP_148204084.1\|810035_810869_-\|hypothetical-protein	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0.00179535
NC_012026.1\|WP_012659034.1\|804130_805393_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	1.01516e-169
NC_012026.1\|WP_012659037.1\|808885_809860_-\|appendage-associated-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	6.04689e-05
NC_012026.1\|WP_010268058.1\|821535_821940_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	1.39197e-52
NC_012026.1\|WP_012659041.1\|819168_821532_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_012026.1\|WP_181005430.1\|805587_806352_-\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|172732	PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional.	0
NC_012026.1\|WP_010265240.1\|821980_823081_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.50761e-156
NC_012026.1\|WP_010268053.1\|816640_818887_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	4.58256e-53
NC_012026.1\|WP_012659037.1\|812874_813849_-\|appendage-associated-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	6.04689e-05
NC_012026.1\|WP_029209884.1\|806351_807125_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	2.61734e-103
NC_012026.1\|WP_010265232.1\|815262_816582_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	9.78143e-61
NC_012026.1\|WP_010267981.1\|802697_803741_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	7.68934e-146
NC_012026.1\|WP_010265227.1\|814824_815250_+\|ribonuclease-P-protein-component	gnl\|CDD\|376392	pfam00825, Ribonuclease_P, Ribonuclease P.	3.94519e-16

>NC_012026.1|WP_148204084.1|810035_810869_-|hypothetical-protein
MRLRSAYRAIIGRIELRKELDAIDAEWRPVIARESLRKELDAIDAEWAPKIELSAELKAIDAEWRPAIRLRSAYRAIIGRWELSKELKAIDAEWAPVIKLRKELKAIDAEWAPVIKLRKELKAIDAEWRPRIAKAQEELAAQVRRELRAELNAIDTAWRFVIVCQTGQSMTKHTSSEQLDVELHATNSGNGMELTLKLQVQEGVELQSLEQVFCECADRCVAAINSLGTGRSRKCADPGLIDGQVATPSTALGQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_012659037.1|808885_809860_-|appendage-associated-protein
MGCPVSRGGSPGCGRRIAEELRLAEDARLRLALLGRCIVKGSPAQVRKELRAELKAIDAEWRPVIARESLRKELDAIDAEWQHAITFWHISRAIIGSIELSKELDAIDAEWRPVIVRESLRKELKAIDAEWRPAIRLESAYRAIIGSIELSKELKAIDAETQHAVELRRALRTIEGRIELSRELKAIDAEWAPRIAQAKEIAQARESLRKELNDIDAEWAPKIAQAKEIAQAKAELAAATDALKRAADKLQALGKMGTTSTPGTDLIGVVTTAVTTTLAGTQPAPGTDLVGVATPSTALGQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_010267994.1|807804_808704_-|4-hydroxybenzoate-octaprenyltransferase
MLLGRVKNLIKCHLPLPYFTLCRLQSVEITLLAAFPALASISIASSSIAKTLWLFVLSAVGAAIVRTAGCVINDIFDRKIDAKVRRTKNRPLASGALTVPQALKVLLLLVGIALGILLLTNAMTFYLSTFFAVGIVLYPLMKRYFSYPQFFLGFVFNCGVLIGSAMAANKLVLGSILLYIGCIFWTTAYDTIYACQDKEDDAILGLGSTAVKFGANTKRYIGRLYILTTTMWVSTGVISSLGAAYYVCMLGIAGIFYYQYAKSDFDSPSRCMYMFRINMYVGLLLFLGAFLGKIGIRFL
>NC_012026.1|WP_010265186.1|807306_807792_-|flavin-reductase-family-protein
MQLGDVSSELFRSCMGRFATGVTVVTTMDNCGVMHGVTVSSFNSVSLDPPLVLFSIEKTSSRFGVFSMCTQFVVNILGEHQADVSRNFAERNRKFWESYNFTVVDGMPVINGSIAYFYCTMHHLYDGGDHKIVVGRVLDCKILDDANPLLYYRGGYCRLNC
>NC_012026.1|WP_029209884.1|806351_807125_-|4-hydroxy-tetrahydrodipicolinate-reductase
MKIGIVGCLGRMGRIIVQEVVGTGGVELSGGVVRRGNGLVGEDMGAVLGCGHGAKITDSKEFLFDCSDVVIDFSSPECMLECVGIASEKRVPLVSGTTGVDERDFRTHAEKVPLLWSCNMSLGVTLLLELVKMAAAGFRGYDVEIRELHHRAKKDAPSGTSLMLGKAVAQGMGVELESQQHTFGFGCRRSGAVGFSVARGGGVIGDHAVMFLGDDEIVELQHRAIDRRVFARGAIKAACWLVGKPAGLYTMLDVLRA
>NC_012026.1|WP_181005430.1|805587_806352_-|phosphate-ABC-transporter-ATP-binding-protein
MSVSEVHAAVEGLNLWYGKKQILFDVNLDVYKREVTALIGPSGCGKSTFLRCFNRMNDFVPDCKVEGKIDIEGMDVHSPDTNVVLLRAKVGMVFQKPNPFPDSIYKNIAYGPKLHGLARNKRRLDDIVEESLRRVGLWDELGGRLKDSACKLSGGQQQRLCIARAIAVRPTMLLMDEPCSALDPVATGVVENLIKELKKNFTIVLVTHSVKQVREVSDRVAFFQEGRIVEHNTTKEVFKAPKSEEVKGYLADHL
>NC_012026.1|WP_012659034.1|804130_805393_+|tRNA-guanosine(34)-transglycosylase-Tgt
MYARLYQNFNFHVLLQHNRARVGVISTPHGVLYTPAFIFCATKAAIKSLDMKTVKECGTQIVLSNTYHLMLQPGAETVAALGGLHNMLGWKGPMLTDSGGYQIFSLGYGSVSEELKGKRRRANSSLIKIDESGAIFRSYINGQLHHLTPEKSMHIQRMLGADLVVVLDECTPFHTSYEYTAQSMHMSNRWALRSLEEFQKTADGTQALYCVIQGGVHSDLRRVSCEFANSSPFFGNAIGGSLGSHKQQMYDTVSLTTSLLDKSRPVHLLGIGNVCDILHGVMNGVDTFDCVYPTRIARHGAALVRPENRISPDREYVNLYNSKFARSLAPIEQDCGCYTCNHHSRGYLHHLLKAKELLAYTLITIHNVYFMNSLMQRVRRAIAGETLEQEYEYWLGKRGAAPDSASPQPPPSGKTPTAPR
>NC_012026.1|WP_010265167.1|803740_803917_-|50S-ribosomal-protein-L32
MAVPKRKKSKSRRNMHRSHLALSAANVVIDPTTGEYKLPHHVCLGGYYNGKQVTESKV
>NC_012026.1|WP_010267981.1|802697_803741_-|phosphate-acyltransferase-PlsX
MVRDSGACVSVALDAMGADLGPEVAIKGADLVLSGAVPCKHKVHLSIYGKESAVLPVLGKYKLVEKNSVFIDTPDAVLCDDRPSFALRHRRKSSMWCAIEDVKKGVVASAVSAGNTGALMAISRYLLGTLQGIDRPAIATVLPSRKGSFVALDLGANAECAPGLLFQFAIMGRAFARAVLGVEHPKVGLLNIGAEDTKGTYNIQEAFALMRDAKQDINFYGYVEAKEAFDGVADVVVADGFSGNIMLKTCEAVAGLTLHILKKEICSSLMGRAAMRILRSCYFKRTSGSALDVRSYNGAVLLGLNGIVVKSHGSADATAFAHAIKEAVCVISQGDMAKEMISEVSNG
>NC_012026.1|WP_035018003.1|801729_802698_-|ketoacyl-ACP-synthase-III
MRRSVFCGVGAFLPAKVITNDDLSLMVDTTDEWVFRRTGIKRRHVVEEGDTVSGMATKAAEIALEDAGVSASEVDLIIVATATPDKTMPSCATMVQGNLGCKNAAAFDINAACSGFLYALSIVDSMIKAGQANIALIIGSEAMSKVVDWTDRSTCVLFGDGAGAFVFKGQDETEKPGAGVMSTLLCADGSLGNVLYTNGGVASTGKAGYICMKGTVLFEHAVVKLSSAISALLESSALDVDSIDWFIPHQANVRIIDLVINRLGLSRDKVILSIDEHANTSSASIPLAMYEAKRAGRIKKGNLVLFAAIGAGITWGVSLLRL
>NC_012026.1|WP_012659039.1|811761_812697_-|hypothetical-protein
MGCPVSRGGSPGCGRRIAEELRFFVVDREASMCGDSCNGGGDRQQRQELAAAARASLLCLGGVMQQHITAAKARAELRKELKAIDAEWRPVIARESLRKELKAIDAQWQHAITFLRISRAIIGSIELSKELKAIDAGWEPVIIHEAQKKKREREERVAQVRRELRAELRAIDAEWRLVIARESLRKELDAIDAECRHTIKLRKELKAIDAEWRPVIARESLRKELDAIDAEWAPRIARAELAAAADALKRAADKLQALGKMDTTSTPGTDLIGVVTTAIATLAAAGMQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_012659037.1|812874_813849_-|appendage-associated-protein
MGCPVSRGGSPGCGRRIAEELRLAEDARLRLALLGRCIVKGSPAQVRKELRAELKAIDAEWRPVIARESLRKELDAIDAEWQHAITFWHISRAIIGSIELSKELDAIDAEWRPVIVRESLRKELKAIDAEWRPAIRLESAYRAIIGSIELSKELKAIDAETQHAVELRRALRTIEGRIELSRELKAIDAEWAPRIAQAKEIAQARESLRKELNDIDAEWAPKIAQAKEIAQAKAELAAATDALKRAADKLQALGKMGTTSTPGTDLIGVVTTAVTTTLAGTQPAPGTDLVGVATPSTALGQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_010265225.1|814750_814885_+|50S-ribosomal-protein-L34
MKRTFQPSRIVRKRRHGFRARMSTRWGRKILNRRRAKGRCLLCA
>NC_012026.1|WP_010265227.1|814824_815250_+|ribonuclease-P-protein-component
MGQKDSQQEACQGEVPFVRLKGVVTLKKRKEFARARFSGRSASSKGLLLQAVEDSAHPPGSDGLVRVGFTVSKKSGNSVVRNRIRRRLRVIAQDVISTSAARGFCYVFVSSSRLSETKLPVLRSSLVSCLKRLRLHVPVCD
>NC_012026.1|WP_010265232.1|815262_816582_+|sodium:alanine-symporter-family-protein
MGLLNTLLCIPAVAMLLFAGLRMSISSGWLQIRGLPLAISSLFAGERRKFSSVAAVCTILGGNLGVGNISGTAIALSSGGPGFIVWMVLIITVASIIKYANCYISTSTRVQAQNGKTFGGPVVYVKHAFGVKWAPCVVAFVTAVCAITVGNLVQVNSLAIPMSLMDLPPLAAGILVAFALFFVSALGMNFIAKTVSGMVPAMVLLYIALCFVVLVKCYDNILPSLTLILTSFLNLDSLKNGAALAFIAEILAVVQVGALRGIFATDIGLGLEGTVHSLVPNECDDKRFVAQQSLISLVSPFVVAIVAFVTTMVLLTTGVWSDAALESTNMCFTAFTSALGSGYVEYALLGLMFCFSFTTMLTWLMCSKEALLYVLGRDAYGKAWTAFFIAIAPLGSVCTVALLWDIADLAISLATIVNTIGMLVVASRYRDMFNVAHLR
>NC_012026.1|WP_010268053.1|816640_818887_-|ComEC/Rec2-family-competence-protein
MTFGLTVNAMQPEIGPFNIKKFWRLTIDALTSQACNFVIWIPALQAAGILLYFSLKHEPSFTLAALVACAMVALFLLTLINTRFLPLLIVAFGALGFISAHCRTALLFPKQPPISTFRRVYVNGATGLLKEINHKPGYAQLLVCDVESDKIQGICARLAARTAIDPTIRPGDILTFSGVIHPPPVSASKHGYDFARVAYFRGINAVGFTTSQVKLHERRSKVGFKEWVERIRDEIYARLVSGLRRDCAEIMAALLVGKRLGIRSEVLEDIRNSGLSHLFAISGLHLSFVAGISFMLTRNIFVLSETITLKHNIKKFAAVVAIIASFFYLLISGMPVSACRAFIMVTLTFVGIIVDKPNSVLRSISLAASIILLLTPETILLPSFQMSFAAVVALAGSCGVSRVVSAGSVVRYITAATSGSLIASIATAPYVVYHFNYFSVVGVVSNIIAIPLTAFVVIPLGLVYVITDCLLSGALVASPLEASVGLILYIAHYAAKVEWLAPTVRSIPPASVLFMTLGLLAFSWWRGTARIILGLLFALSGFLLALAYKTPDVLYGVGGVAVKEGDGQLYFAMRRGSTRGFSYSAWARENGQPKIINGGYFGQGKKLICMAGGCIYDSRVIISCDTEFILQRCSEADLVIHTGSGPRYPAPCSHVPHITYDDIRKLGAHYVSLSGSSVKVESARTRRPWHANAASFVQGKCAKCAARNRNAGDSTPFCNGLAIVTHSDNKLPVDRRRKVRVPADSIGP
>NC_012026.1|WP_012659041.1|819168_821532_-|phenylalanine--tRNA-ligase-subunit-beta
MRFAYSWLMDHLDTEWSASAVADELSRLGIEAELLHEGQDPAPFVVARVGAVKPHPSADKLKVCEVFDGADHMQVVCGASNVREGMLSVLARCGAVMPNGGPTIVEAVLRGVKSHGMLCSADELGVQGWRAQDSGILDLPSSDYEVGDSFFLSGAVIEVGVTPNRGDCLGLRGIARELVAAGVGALRPLPVDDLEVFGRSPIEAEMRSAGVLMGRYIKSIKNTGDSPRWIKDRLISAGVKTISCVVDIVNYVMLVLNRPMHVYDADKIQGGKLVVGASSNTDFHALDGKKYTLSKDNLVVTDGAGVVHCIAGVIGSTLSGCTLDSENIFLESAWYDPVDIAMSARKLKLSTDSSCRFERFTDPGCVKLGLDFASHMIVKYCGGVASDVVACGETPFSEGRVISFNPDSVGVIGSVEIEREEILRILTALGFDVNADKDRQWEVSVPSWRLADVRSSFDVVEEVLRMHGYDKVQEQPVVPCIAGPNGCNYDEKLSLIMLSAGLTEVVTWSFMSGAVAEKLGYSIEDLCVENPVSNKFDVMRPSLLPNLLQTAASNQACGCESVAIFELGEVYRFLDESERSICGVRSGDNVPRNPHGATRKFDFFDAKCDVLQVLTQLGIDGRLVEFRSCDRSYMHPARSADVYFRDILCGYVGELHPDLIGFFEMRSAAACFEIFLSRIPNVDDNPTGDEFLVHKYQPVKRDFAFVLDQGVQSQALVDVVGCIPGVAEVSVFDFYCGDNIPEGKVSIAVAVVMISKVGTMTESEIKDVSERIIALVAQKLGGELRAD
>NC_012026.1|WP_010268058.1|821535_821940_-|50S-ribosomal-protein-L17
MRHGISCRKFSRPTAHRLSMLANLAVSLIRHERIVTTVAKAKDLRPFVERLVTVGRRLAKKDPVRGRRLLLSKMGGDLDAVNKLLDVLAKRYARRPGGYTRILKNGFRAGDCAPIAIMEFVDRKEGEPKKVAEG
>NC_012026.1|WP_010265240.1|821980_823081_-|DNA-directed-RNA-polymerase-subunit-alpha
MAISDNGGGSVGLCYGSEFSISDHWDKLTRPSSIKVVGDGDLSRSAELIVEPLESGFALTLGNALRRVMMSSLRGFAVYGIEVEGVSHELTSLSGVREDVADLVLNLSMLRVKLLTSESRVLRLVAKGPGEITAAAIGDSEGCVVLNKDLHICTLGKDVDFSMKIYVNSGKGYVPASEYRAASRSGATSEVGPGFIATNALYSPVKKVAFRIESSRIGQFTDYDRLVISVETDGSISPDEAVAVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELELSVRSHNCLKNDNITYIGDLVQKTESDMLRTPNFGRKSLNEINEVLASMNLHLGMKVPNWPPESIENLSKQYSED
>NC_012026.1|WP_010268062.1|823101_823476_-|30S-ribosomal-protein-S11
MAVVKKRRNVVVGEVHIYATYNNVIVTIADQQGHVLVTTSAGACNFKGSKKATPYAAQETVARAVKAVVERNGMRTVSVCISGPGAGREAAIRAVQTCNLNVTSIRDTTKLPHNGCKLPKRRRV

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Crispr_ID: NC_012026_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012026_3

812000-812190

Orphan

Consensus_repeat	Method
CTCCACTCAGCATCTATAGC	CRT

3 spacers

The CRISPR arrays of NC_012026_3

>merge|NC_012026|3|812000-812190|CRT
GCCCACTCAGCATCTATAGCGTCAAGCTCCTTCCTGAGTGATTCACGGGCAATCACAGGCCTCCACTCAGCATCTATAGCTTTGAGCTCCTTCCTGAGCTTAATCGTATGTCTACACTCAGCATCTATAGCGTCAAGCTCCTTCCTGAGTGATTCACGGGCAATCACAAGCCTCCACTCAGCATCTATAGC

>NC_012026|3|1|812000-812190|CRT
GCCCACTCAGCATCTATAGC	GTCAAGCTCCTTCCTGAGTGATTCACGGGCAATCACAGGC
CTCCACTCAGCATCTATAGC	TTTGAGCTCCTTCCTGAGCTTAATCGTATGT
CTACACTCAGCATCTATAGC	GTCAAGCTCCTTCCTGAGTGATTCACGGGCAATCACAAGC
CTCCACTCAGCATCTATAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012026.1\|WP_010265167.1\|803740_803917_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NC_012026.1\|WP_010267994.1\|807804_808704_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237228
NC_012026.1\|WP_010265225.1\|814750_814885_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NC_012026.1\|WP_010268062.1\|823101_823476_-\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NC_012026.1\|WP_010265186.1\|807306_807792_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NC_012026.1\|WP_035018003.1\|801729_802698_-\|ketoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|236475
NC_012026.1\|WP_148204084.1\|810035_810869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235461
NC_012026.1\|WP_012659034.1\|804130_805393_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_012026.1\|WP_012659037.1\|808885_809860_-\|appendage-associated-protein	unknown	unknown	gnl\|CDD\|223496
NC_012026.1\|WP_010268058.1\|821535_821940_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NC_012026.1\|WP_012659041.1\|819168_821532_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_012026.1\|WP_181005430.1\|805587_806352_-\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|172732
NC_012026.1\|WP_010265240.1\|821980_823081_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NC_012026.1\|WP_010265244.1\|823485_823857_-\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
NC_012026.1\|WP_010268053.1\|816640_818887_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NC_012026.1\|WP_012659037.1\|812874_813849_-\|appendage-associated-protein	unknown	unknown	gnl\|CDD\|223496
NC_012026.1\|WP_029209884.1\|806351_807125_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_012026.1\|WP_010265232.1\|815262_816582_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NC_012026.1\|WP_010267981.1\|802697_803741_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NC_012026.1\|WP_010265227.1\|814824_815250_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|376392

Protein	Function_ID	Function_description	E-value
NC_012026.1\|WP_010265167.1\|803740_803917_-\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	3.51939e-24
NC_012026.1\|WP_010267994.1\|807804_808704_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237228	PRK12847, ubiA, 4-hydroxybenzoate octaprenyltransferase.	8.78658e-136
NC_012026.1\|WP_010265225.1\|814750_814885_+\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	3.43039e-10
NC_012026.1\|WP_010268062.1\|823101_823476_-\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.23464e-63
NC_012026.1\|WP_010265186.1\|807306_807792_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	3.68494e-56
NC_012026.1\|WP_035018003.1\|801729_802698_-\|ketoacyl-ACP-synthase-III	gnl\|CDD\|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	2.31576e-159
NC_012026.1\|WP_148204084.1\|810035_810869_-\|hypothetical-protein	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0.00179535
NC_012026.1\|WP_012659034.1\|804130_805393_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	1.01516e-169
NC_012026.1\|WP_012659037.1\|808885_809860_-\|appendage-associated-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	6.04689e-05
NC_012026.1\|WP_010268058.1\|821535_821940_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	1.39197e-52
NC_012026.1\|WP_012659041.1\|819168_821532_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_012026.1\|WP_181005430.1\|805587_806352_-\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|172732	PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional.	0
NC_012026.1\|WP_010265240.1\|821980_823081_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.50761e-156
NC_012026.1\|WP_010265244.1\|823485_823857_-\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	2.12556e-72
NC_012026.1\|WP_010268053.1\|816640_818887_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	4.58256e-53
NC_012026.1\|WP_012659037.1\|812874_813849_-\|appendage-associated-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	6.04689e-05
NC_012026.1\|WP_029209884.1\|806351_807125_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	2.61734e-103
NC_012026.1\|WP_010265232.1\|815262_816582_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	9.78143e-61
NC_012026.1\|WP_010267981.1\|802697_803741_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	7.68934e-146
NC_012026.1\|WP_010265227.1\|814824_815250_+\|ribonuclease-P-protein-component	gnl\|CDD\|376392	pfam00825, Ribonuclease_P, Ribonuclease P.	3.94519e-16

>NC_012026.1|WP_148204084.1|810035_810869_-|hypothetical-protein
MRLRSAYRAIIGRIELRKELDAIDAEWRPVIARESLRKELDAIDAEWAPKIELSAELKAIDAEWRPAIRLRSAYRAIIGRWELSKELKAIDAEWAPVIKLRKELKAIDAEWAPVIKLRKELKAIDAEWRPRIAKAQEELAAQVRRELRAELNAIDTAWRFVIVCQTGQSMTKHTSSEQLDVELHATNSGNGMELTLKLQVQEGVELQSLEQVFCECADRCVAAINSLGTGRSRKCADPGLIDGQVATPSTALGQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_012659037.1|808885_809860_-|appendage-associated-protein
MGCPVSRGGSPGCGRRIAEELRLAEDARLRLALLGRCIVKGSPAQVRKELRAELKAIDAEWRPVIARESLRKELDAIDAEWQHAITFWHISRAIIGSIELSKELDAIDAEWRPVIVRESLRKELKAIDAEWRPAIRLESAYRAIIGSIELSKELKAIDAETQHAVELRRALRTIEGRIELSRELKAIDAEWAPRIAQAKEIAQARESLRKELNDIDAEWAPKIAQAKEIAQAKAELAAATDALKRAADKLQALGKMGTTSTPGTDLIGVVTTAVTTTLAGTQPAPGTDLVGVATPSTALGQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_010267994.1|807804_808704_-|4-hydroxybenzoate-octaprenyltransferase
MLLGRVKNLIKCHLPLPYFTLCRLQSVEITLLAAFPALASISIASSSIAKTLWLFVLSAVGAAIVRTAGCVINDIFDRKIDAKVRRTKNRPLASGALTVPQALKVLLLLVGIALGILLLTNAMTFYLSTFFAVGIVLYPLMKRYFSYPQFFLGFVFNCGVLIGSAMAANKLVLGSILLYIGCIFWTTAYDTIYACQDKEDDAILGLGSTAVKFGANTKRYIGRLYILTTTMWVSTGVISSLGAAYYVCMLGIAGIFYYQYAKSDFDSPSRCMYMFRINMYVGLLLFLGAFLGKIGIRFL
>NC_012026.1|WP_010265186.1|807306_807792_-|flavin-reductase-family-protein
MQLGDVSSELFRSCMGRFATGVTVVTTMDNCGVMHGVTVSSFNSVSLDPPLVLFSIEKTSSRFGVFSMCTQFVVNILGEHQADVSRNFAERNRKFWESYNFTVVDGMPVINGSIAYFYCTMHHLYDGGDHKIVVGRVLDCKILDDANPLLYYRGGYCRLNC
>NC_012026.1|WP_029209884.1|806351_807125_-|4-hydroxy-tetrahydrodipicolinate-reductase
MKIGIVGCLGRMGRIIVQEVVGTGGVELSGGVVRRGNGLVGEDMGAVLGCGHGAKITDSKEFLFDCSDVVIDFSSPECMLECVGIASEKRVPLVSGTTGVDERDFRTHAEKVPLLWSCNMSLGVTLLLELVKMAAAGFRGYDVEIRELHHRAKKDAPSGTSLMLGKAVAQGMGVELESQQHTFGFGCRRSGAVGFSVARGGGVIGDHAVMFLGDDEIVELQHRAIDRRVFARGAIKAACWLVGKPAGLYTMLDVLRA
>NC_012026.1|WP_181005430.1|805587_806352_-|phosphate-ABC-transporter-ATP-binding-protein
MSVSEVHAAVEGLNLWYGKKQILFDVNLDVYKREVTALIGPSGCGKSTFLRCFNRMNDFVPDCKVEGKIDIEGMDVHSPDTNVVLLRAKVGMVFQKPNPFPDSIYKNIAYGPKLHGLARNKRRLDDIVEESLRRVGLWDELGGRLKDSACKLSGGQQQRLCIARAIAVRPTMLLMDEPCSALDPVATGVVENLIKELKKNFTIVLVTHSVKQVREVSDRVAFFQEGRIVEHNTTKEVFKAPKSEEVKGYLADHL
>NC_012026.1|WP_012659034.1|804130_805393_+|tRNA-guanosine(34)-transglycosylase-Tgt
MYARLYQNFNFHVLLQHNRARVGVISTPHGVLYTPAFIFCATKAAIKSLDMKTVKECGTQIVLSNTYHLMLQPGAETVAALGGLHNMLGWKGPMLTDSGGYQIFSLGYGSVSEELKGKRRRANSSLIKIDESGAIFRSYINGQLHHLTPEKSMHIQRMLGADLVVVLDECTPFHTSYEYTAQSMHMSNRWALRSLEEFQKTADGTQALYCVIQGGVHSDLRRVSCEFANSSPFFGNAIGGSLGSHKQQMYDTVSLTTSLLDKSRPVHLLGIGNVCDILHGVMNGVDTFDCVYPTRIARHGAALVRPENRISPDREYVNLYNSKFARSLAPIEQDCGCYTCNHHSRGYLHHLLKAKELLAYTLITIHNVYFMNSLMQRVRRAIAGETLEQEYEYWLGKRGAAPDSASPQPPPSGKTPTAPR
>NC_012026.1|WP_010265167.1|803740_803917_-|50S-ribosomal-protein-L32
MAVPKRKKSKSRRNMHRSHLALSAANVVIDPTTGEYKLPHHVCLGGYYNGKQVTESKV
>NC_012026.1|WP_010267981.1|802697_803741_-|phosphate-acyltransferase-PlsX
MVRDSGACVSVALDAMGADLGPEVAIKGADLVLSGAVPCKHKVHLSIYGKESAVLPVLGKYKLVEKNSVFIDTPDAVLCDDRPSFALRHRRKSSMWCAIEDVKKGVVASAVSAGNTGALMAISRYLLGTLQGIDRPAIATVLPSRKGSFVALDLGANAECAPGLLFQFAIMGRAFARAVLGVEHPKVGLLNIGAEDTKGTYNIQEAFALMRDAKQDINFYGYVEAKEAFDGVADVVVADGFSGNIMLKTCEAVAGLTLHILKKEICSSLMGRAAMRILRSCYFKRTSGSALDVRSYNGAVLLGLNGIVVKSHGSADATAFAHAIKEAVCVISQGDMAKEMISEVSNG
>NC_012026.1|WP_035018003.1|801729_802698_-|ketoacyl-ACP-synthase-III
MRRSVFCGVGAFLPAKVITNDDLSLMVDTTDEWVFRRTGIKRRHVVEEGDTVSGMATKAAEIALEDAGVSASEVDLIIVATATPDKTMPSCATMVQGNLGCKNAAAFDINAACSGFLYALSIVDSMIKAGQANIALIIGSEAMSKVVDWTDRSTCVLFGDGAGAFVFKGQDETEKPGAGVMSTLLCADGSLGNVLYTNGGVASTGKAGYICMKGTVLFEHAVVKLSSAISALLESSALDVDSIDWFIPHQANVRIIDLVINRLGLSRDKVILSIDEHANTSSASIPLAMYEAKRAGRIKKGNLVLFAAIGAGITWGVSLLRL
>NC_012026.1|WP_012659037.1|812874_813849_-|appendage-associated-protein
MGCPVSRGGSPGCGRRIAEELRLAEDARLRLALLGRCIVKGSPAQVRKELRAELKAIDAEWRPVIARESLRKELDAIDAEWQHAITFWHISRAIIGSIELSKELDAIDAEWRPVIVRESLRKELKAIDAEWRPAIRLESAYRAIIGSIELSKELKAIDAETQHAVELRRALRTIEGRIELSRELKAIDAEWAPRIAQAKEIAQARESLRKELNDIDAEWAPKIAQAKEIAQAKAELAAATDALKRAADKLQALGKMGTTSTPGTDLIGVVTTAVTTTLAGTQPAPGTDLVGVATPSTALGQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_010265225.1|814750_814885_+|50S-ribosomal-protein-L34
MKRTFQPSRIVRKRRHGFRARMSTRWGRKILNRRRAKGRCLLCA
>NC_012026.1|WP_010265227.1|814824_815250_+|ribonuclease-P-protein-component
MGQKDSQQEACQGEVPFVRLKGVVTLKKRKEFARARFSGRSASSKGLLLQAVEDSAHPPGSDGLVRVGFTVSKKSGNSVVRNRIRRRLRVIAQDVISTSAARGFCYVFVSSSRLSETKLPVLRSSLVSCLKRLRLHVPVCD
>NC_012026.1|WP_010265232.1|815262_816582_+|sodium:alanine-symporter-family-protein
MGLLNTLLCIPAVAMLLFAGLRMSISSGWLQIRGLPLAISSLFAGERRKFSSVAAVCTILGGNLGVGNISGTAIALSSGGPGFIVWMVLIITVASIIKYANCYISTSTRVQAQNGKTFGGPVVYVKHAFGVKWAPCVVAFVTAVCAITVGNLVQVNSLAIPMSLMDLPPLAAGILVAFALFFVSALGMNFIAKTVSGMVPAMVLLYIALCFVVLVKCYDNILPSLTLILTSFLNLDSLKNGAALAFIAEILAVVQVGALRGIFATDIGLGLEGTVHSLVPNECDDKRFVAQQSLISLVSPFVVAIVAFVTTMVLLTTGVWSDAALESTNMCFTAFTSALGSGYVEYALLGLMFCFSFTTMLTWLMCSKEALLYVLGRDAYGKAWTAFFIAIAPLGSVCTVALLWDIADLAISLATIVNTIGMLVVASRYRDMFNVAHLR
>NC_012026.1|WP_010268053.1|816640_818887_-|ComEC/Rec2-family-competence-protein
MTFGLTVNAMQPEIGPFNIKKFWRLTIDALTSQACNFVIWIPALQAAGILLYFSLKHEPSFTLAALVACAMVALFLLTLINTRFLPLLIVAFGALGFISAHCRTALLFPKQPPISTFRRVYVNGATGLLKEINHKPGYAQLLVCDVESDKIQGICARLAARTAIDPTIRPGDILTFSGVIHPPPVSASKHGYDFARVAYFRGINAVGFTTSQVKLHERRSKVGFKEWVERIRDEIYARLVSGLRRDCAEIMAALLVGKRLGIRSEVLEDIRNSGLSHLFAISGLHLSFVAGISFMLTRNIFVLSETITLKHNIKKFAAVVAIIASFFYLLISGMPVSACRAFIMVTLTFVGIIVDKPNSVLRSISLAASIILLLTPETILLPSFQMSFAAVVALAGSCGVSRVVSAGSVVRYITAATSGSLIASIATAPYVVYHFNYFSVVGVVSNIIAIPLTAFVVIPLGLVYVITDCLLSGALVASPLEASVGLILYIAHYAAKVEWLAPTVRSIPPASVLFMTLGLLAFSWWRGTARIILGLLFALSGFLLALAYKTPDVLYGVGGVAVKEGDGQLYFAMRRGSTRGFSYSAWARENGQPKIINGGYFGQGKKLICMAGGCIYDSRVIISCDTEFILQRCSEADLVIHTGSGPRYPAPCSHVPHITYDDIRKLGAHYVSLSGSSVKVESARTRRPWHANAASFVQGKCAKCAARNRNAGDSTPFCNGLAIVTHSDNKLPVDRRRKVRVPADSIGP
>NC_012026.1|WP_012659041.1|819168_821532_-|phenylalanine--tRNA-ligase-subunit-beta
MRFAYSWLMDHLDTEWSASAVADELSRLGIEAELLHEGQDPAPFVVARVGAVKPHPSADKLKVCEVFDGADHMQVVCGASNVREGMLSVLARCGAVMPNGGPTIVEAVLRGVKSHGMLCSADELGVQGWRAQDSGILDLPSSDYEVGDSFFLSGAVIEVGVTPNRGDCLGLRGIARELVAAGVGALRPLPVDDLEVFGRSPIEAEMRSAGVLMGRYIKSIKNTGDSPRWIKDRLISAGVKTISCVVDIVNYVMLVLNRPMHVYDADKIQGGKLVVGASSNTDFHALDGKKYTLSKDNLVVTDGAGVVHCIAGVIGSTLSGCTLDSENIFLESAWYDPVDIAMSARKLKLSTDSSCRFERFTDPGCVKLGLDFASHMIVKYCGGVASDVVACGETPFSEGRVISFNPDSVGVIGSVEIEREEILRILTALGFDVNADKDRQWEVSVPSWRLADVRSSFDVVEEVLRMHGYDKVQEQPVVPCIAGPNGCNYDEKLSLIMLSAGLTEVVTWSFMSGAVAEKLGYSIEDLCVENPVSNKFDVMRPSLLPNLLQTAASNQACGCESVAIFELGEVYRFLDESERSICGVRSGDNVPRNPHGATRKFDFFDAKCDVLQVLTQLGIDGRLVEFRSCDRSYMHPARSADVYFRDILCGYVGELHPDLIGFFEMRSAAACFEIFLSRIPNVDDNPTGDEFLVHKYQPVKRDFAFVLDQGVQSQALVDVVGCIPGVAEVSVFDFYCGDNIPEGKVSIAVAVVMISKVGTMTESEIKDVSERIIALVAQKLGGELRAD
>NC_012026.1|WP_010268058.1|821535_821940_-|50S-ribosomal-protein-L17
MRHGISCRKFSRPTAHRLSMLANLAVSLIRHERIVTTVAKAKDLRPFVERLVTVGRRLAKKDPVRGRRLLLSKMGGDLDAVNKLLDVLAKRYARRPGGYTRILKNGFRAGDCAPIAIMEFVDRKEGEPKKVAEG
>NC_012026.1|WP_010265240.1|821980_823081_-|DNA-directed-RNA-polymerase-subunit-alpha
MAISDNGGGSVGLCYGSEFSISDHWDKLTRPSSIKVVGDGDLSRSAELIVEPLESGFALTLGNALRRVMMSSLRGFAVYGIEVEGVSHELTSLSGVREDVADLVLNLSMLRVKLLTSESRVLRLVAKGPGEITAAAIGDSEGCVVLNKDLHICTLGKDVDFSMKIYVNSGKGYVPASEYRAASRSGATSEVGPGFIATNALYSPVKKVAFRIESSRIGQFTDYDRLVISVETDGSISPDEAVAVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELELSVRSHNCLKNDNITYIGDLVQKTESDMLRTPNFGRKSLNEINEVLASMNLHLGMKVPNWPPESIENLSKQYSED
>NC_012026.1|WP_010268062.1|823101_823476_-|30S-ribosomal-protein-S11
MAVVKKRRNVVVGEVHIYATYNNVIVTIADQQGHVLVTTSAGACNFKGSKKATPYAAQETVARAVKAVVERNGMRTVSVCISGPGAGREAAIRAVQTCNLNVTSIRDTTKLPHNGCKLPKRRRV
>NC_012026.1|WP_010265244.1|823485_823857_-|30S-ribosomal-protein-S13
MARIGGVNVPVNKRVVVALTYIYGIGPSLASKICEGCGIGEDVLVSSLSDEDVVKIRNFIRSGCVVEADLRKEVAMNIKFLMDIGCYRGLRHRKKLPVRGQRTHTNARTRKGGTRLAVAVKKG

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Crispr_ID: NC_012026_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012026_4

813193-813626

Orphan

Consensus_repeat	Method
CCACTCAGCATCTATAGCTT	PILER-CR

5 spacers

The CRISPR arrays of NC_012026_4

>merge|NC_012026|4|813193-813626|PILER-CR
CCATTCGGCATCTATATCGTTAAGCTCCTTCCTGAGTGATTCACGGGCTTGAGCAATTTCTTTTGCTTGGGCAATCCTAGGTGCCCATTCGGCATCTATAGCTTTGAGCTCCCTACTAAGCTCTATACGACCCTCTATGGTGCGAAGTGCCCTCCTGAGCTCAACCGCGTGTTGCGTCTCAGCATCTATAGCTTTGAGCTCCTTACTAAGCTCTATACTACCAATGATAGCGCGATATGCACTCTCGAGCCTAATCGCAGGTCTCCACTCAGCATCTATAGCTTTGAGCTCCTTCCTGAGTGATTCACGGACAATCACAGGCCTCCACTCAGCATCTATAGCGTCAAGCTCCTTACTAAGCTCTATACTACCAATGATAGCGCGAGATATATGCCAGAAGGTAATCGCGTGTTGCCACTCAGCATCTATAGCGT

>NC_012026|4|3|813193-813626|PILER-CR
CCATTCGGCATCTATATCGT	TAAGCTCCTTCCTGAGTGATTCACGGGCTTGAGCAATTTCTTTTGCTTGGGCAATCCTAGGTGCCCA
TTCGGCATCTATAGCTTTGA	GCTCCCTACTAAGCTCTATACGACCCTCTATGGTGCGAAGTGCCCTCCTGAGCTCAACCGCGTGTTGCGT
CTCAGCATCTATAGCTTTGA	GCTCCTTACTAAGCTCTATACTACCAATGATAGCGCGATATGCACTCTCGAGCCTAATCGCAGGTCTCCA
CTCAGCATCTATAGCTTTGA	GCTCCTTCCTGAGTGATTCACGGACAATCACAGGCCTCCA
CTCAGCATCTATAGCGTCAA	GCTCCTTACTAAGCTCTATACTACCAATGATAGCGCGAGATATATGCCAGAAGGTAATCGCGTGTTGCCA
CTCAGCATCTATAGCGT

Protein	Signature genes	Signature genes Name	Protein_function
NC_012026.1\|WP_010265167.1\|803740_803917_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|234901
NC_012026.1\|WP_010267994.1\|807804_808704_-\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|237228
NC_012026.1\|WP_012659041.1\|819168_821532_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NC_012026.1\|WP_010265186.1\|807306_807792_-\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|214900
NC_012026.1\|WP_148204084.1\|810035_810869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235461
NC_012026.1\|WP_012659034.1\|804130_805393_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NC_012026.1\|WP_012659037.1\|808885_809860_-\|appendage-associated-protein	unknown	unknown	gnl\|CDD\|223496
NC_012026.1\|WP_010268058.1\|821535_821940_-\|50S-ribosomal-protein-L17	unknown	unknown	gnl\|CDD\|235522
NC_012026.1\|WP_010268062.1\|823101_823476_-\|30S-ribosomal-protein-S11	unknown	unknown	gnl\|CDD\|180007
NC_012026.1\|WP_181005430.1\|805587_806352_-\|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|172732
NC_012026.1\|WP_010265240.1\|821980_823081_-\|DNA-directed-RNA-polymerase-subunit-alpha	unknown	unknown	gnl\|CDD\|235359
NC_012026.1\|WP_010265244.1\|823485_823857_-\|30S-ribosomal-protein-S13	unknown	unknown	gnl\|CDD\|235358
NC_012026.1\|WP_010268053.1\|816640_818887_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NC_012026.1\|WP_010268066.1\|823920_824571_-\|nucleoside-monophosphate-kinase	unknown	unknown	gnl\|CDD\|273569
NC_012026.1\|WP_012659039.1\|811761_812697_-\|hypothetical-protein	unknown	unknown	unknown
NC_012026.1\|WP_010267981.1\|802697_803741_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NC_012026.1\|WP_029209884.1\|806351_807125_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_012026.1\|WP_010265232.1\|815262_816582_+\|sodium:alanine-symporter-family-protein	unknown	unknown	gnl\|CDD\|224040
NC_012026.1\|WP_010265225.1\|814750_814885_+\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NC_012026.1\|WP_010265227.1\|814824_815250_+\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|376392

Protein	Function_ID	Function_description	E-value
NC_012026.1\|WP_010265167.1\|803740_803917_-\|50S-ribosomal-protein-L32	gnl\|CDD\|234901	PRK01110, rpmF, 50S ribosomal protein L32; Validated.	3.51939e-24
NC_012026.1\|WP_010267994.1\|807804_808704_-\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|237228	PRK12847, ubiA, 4-hydroxybenzoate octaprenyltransferase.	8.78658e-136
NC_012026.1\|WP_012659041.1\|819168_821532_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NC_012026.1\|WP_010265186.1\|807306_807792_-\|flavin-reductase-family-protein	gnl\|CDD\|214900	smart00903, Flavin_Reduct, Flavin reductase like domain. This entry represents the FMN-binding domain found in NAD(P)H-flavin oxidoreductases (flavin reductases), a class of enzymes capable of producing reduced flavin for bacterial bioluminescence and other biological processes. This domain is also found in various other oxidoreductase and monooxygenase enzymes... This domain consists of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. The flavin reductases have a different dimerisation mode than that found in the PNP oxidase-like family, which also carries an FMN-binding domain with a similar topology.	3.68494e-56
NC_012026.1\|WP_148204084.1\|810035_810869_-\|hypothetical-protein	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0.00179535
NC_012026.1\|WP_012659034.1\|804130_805393_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	1.01516e-169
NC_012026.1\|WP_012659037.1\|808885_809860_-\|appendage-associated-protein	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	6.04689e-05
NC_012026.1\|WP_010268058.1\|821535_821940_-\|50S-ribosomal-protein-L17	gnl\|CDD\|235522	PRK05591, rplQ, 50S ribosomal protein L17; Validated.	1.39197e-52
NC_012026.1\|WP_010268062.1\|823101_823476_-\|30S-ribosomal-protein-S11	gnl\|CDD\|180007	PRK05309, PRK05309, 30S ribosomal protein S11; Validated.	2.23464e-63
NC_012026.1\|WP_181005430.1\|805587_806352_-\|phosphate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|172732	PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional.	0
NC_012026.1\|WP_010265240.1\|821980_823081_-\|DNA-directed-RNA-polymerase-subunit-alpha	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.50761e-156
NC_012026.1\|WP_010265244.1\|823485_823857_-\|30S-ribosomal-protein-S13	gnl\|CDD\|235358	PRK05179, rpsM, 30S ribosomal protein S13; Validated.	2.12556e-72
NC_012026.1\|WP_010268053.1\|816640_818887_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	4.58256e-53
NC_012026.1\|WP_010268066.1\|823920_824571_-\|nucleoside-monophosphate-kinase	gnl\|CDD\|273569	TIGR01351, Adenylate_kinase, adenylate kinase. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is SP\|Q9UIJ7, a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions].	3.85117e-62
NC_012026.1\|WP_010265225.1\|814750_814885_+\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	3.43039e-10
NC_012026.1\|WP_029209884.1\|806351_807125_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	2.61734e-103
NC_012026.1\|WP_010265232.1\|815262_816582_+\|sodium:alanine-symporter-family-protein	gnl\|CDD\|224040	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism].	9.78143e-61
NC_012026.1\|WP_010267981.1\|802697_803741_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	7.68934e-146
NC_012026.1\|WP_010265227.1\|814824_815250_+\|ribonuclease-P-protein-component	gnl\|CDD\|376392	pfam00825, Ribonuclease_P, Ribonuclease P.	3.94519e-16

>NC_012026.1|WP_012659039.1|811761_812697_-|hypothetical-protein
MGCPVSRGGSPGCGRRIAEELRFFVVDREASMCGDSCNGGGDRQQRQELAAAARASLLCLGGVMQQHITAAKARAELRKELKAIDAEWRPVIARESLRKELKAIDAQWQHAITFLRISRAIIGSIELSKELKAIDAGWEPVIIHEAQKKKREREERVAQVRRELRAELRAIDAEWRLVIARESLRKELDAIDAECRHTIKLRKELKAIDAEWRPVIARESLRKELDAIDAEWAPRIARAELAAAADALKRAADKLQALGKMDTTSTPGTDLIGVVTTAIATLAAAGMQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_148204084.1|810035_810869_-|hypothetical-protein
MRLRSAYRAIIGRIELRKELDAIDAEWRPVIARESLRKELDAIDAEWAPKIELSAELKAIDAEWRPAIRLRSAYRAIIGRWELSKELKAIDAEWAPVIKLRKELKAIDAEWAPVIKLRKELKAIDAEWRPRIAKAQEELAAQVRRELRAELNAIDTAWRFVIVCQTGQSMTKHTSSEQLDVELHATNSGNGMELTLKLQVQEGVELQSLEQVFCECADRCVAAINSLGTGRSRKCADPGLIDGQVATPSTALGQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_012659037.1|808885_809860_-|appendage-associated-protein
MGCPVSRGGSPGCGRRIAEELRLAEDARLRLALLGRCIVKGSPAQVRKELRAELKAIDAEWRPVIARESLRKELDAIDAEWQHAITFWHISRAIIGSIELSKELDAIDAEWRPVIVRESLRKELKAIDAEWRPAIRLESAYRAIIGSIELSKELKAIDAETQHAVELRRALRTIEGRIELSRELKAIDAEWAPRIAQAKEIAQARESLRKELNDIDAEWAPKIAQAKEIAQAKAELAAATDALKRAADKLQALGKMGTTSTPGTDLIGVVTTAVTTTLAGTQPAPGTDLVGVATPSTALGQPAPSTALTSVAAEVATPSTALGV
>NC_012026.1|WP_010267994.1|807804_808704_-|4-hydroxybenzoate-octaprenyltransferase
MLLGRVKNLIKCHLPLPYFTLCRLQSVEITLLAAFPALASISIASSSIAKTLWLFVLSAVGAAIVRTAGCVINDIFDRKIDAKVRRTKNRPLASGALTVPQALKVLLLLVGIALGILLLTNAMTFYLSTFFAVGIVLYPLMKRYFSYPQFFLGFVFNCGVLIGSAMAANKLVLGSILLYIGCIFWTTAYDTIYACQDKEDDAILGLGSTAVKFGANTKRYIGRLYILTTTMWVSTGVISSLGAAYYVCMLGIAGIFYYQYAKSDFDSPSRCMYMFRINMYVGLLLFLGAFLGKIGIRFL
>NC_012026.1|WP_010265186.1|807306_807792_-|flavin-reductase-family-protein
MQLGDVSSELFRSCMGRFATGVTVVTTMDNCGVMHGVTVSSFNSVSLDPPLVLFSIEKTSSRFGVFSMCTQFVVNILGEHQADVSRNFAERNRKFWESYNFTVVDGMPVINGSIAYFYCTMHHLYDGGDHKIVVGRVLDCKILDDANPLLYYRGGYCRLNC
>NC_012026.1|WP_029209884.1|806351_807125_-|4-hydroxy-tetrahydrodipicolinate-reductase
MKIGIVGCLGRMGRIIVQEVVGTGGVELSGGVVRRGNGLVGEDMGAVLGCGHGAKITDSKEFLFDCSDVVIDFSSPECMLECVGIASEKRVPLVSGTTGVDERDFRTHAEKVPLLWSCNMSLGVTLLLELVKMAAAGFRGYDVEIRELHHRAKKDAPSGTSLMLGKAVAQGMGVELESQQHTFGFGCRRSGAVGFSVARGGGVIGDHAVMFLGDDEIVELQHRAIDRRVFARGAIKAACWLVGKPAGLYTMLDVLRA
>NC_012026.1|WP_181005430.1|805587_806352_-|phosphate-ABC-transporter-ATP-binding-protein
MSVSEVHAAVEGLNLWYGKKQILFDVNLDVYKREVTALIGPSGCGKSTFLRCFNRMNDFVPDCKVEGKIDIEGMDVHSPDTNVVLLRAKVGMVFQKPNPFPDSIYKNIAYGPKLHGLARNKRRLDDIVEESLRRVGLWDELGGRLKDSACKLSGGQQQRLCIARAIAVRPTMLLMDEPCSALDPVATGVVENLIKELKKNFTIVLVTHSVKQVREVSDRVAFFQEGRIVEHNTTKEVFKAPKSEEVKGYLADHL
>NC_012026.1|WP_012659034.1|804130_805393_+|tRNA-guanosine(34)-transglycosylase-Tgt
MYARLYQNFNFHVLLQHNRARVGVISTPHGVLYTPAFIFCATKAAIKSLDMKTVKECGTQIVLSNTYHLMLQPGAETVAALGGLHNMLGWKGPMLTDSGGYQIFSLGYGSVSEELKGKRRRANSSLIKIDESGAIFRSYINGQLHHLTPEKSMHIQRMLGADLVVVLDECTPFHTSYEYTAQSMHMSNRWALRSLEEFQKTADGTQALYCVIQGGVHSDLRRVSCEFANSSPFFGNAIGGSLGSHKQQMYDTVSLTTSLLDKSRPVHLLGIGNVCDILHGVMNGVDTFDCVYPTRIARHGAALVRPENRISPDREYVNLYNSKFARSLAPIEQDCGCYTCNHHSRGYLHHLLKAKELLAYTLITIHNVYFMNSLMQRVRRAIAGETLEQEYEYWLGKRGAAPDSASPQPPPSGKTPTAPR
>NC_012026.1|WP_010265167.1|803740_803917_-|50S-ribosomal-protein-L32
MAVPKRKKSKSRRNMHRSHLALSAANVVIDPTTGEYKLPHHVCLGGYYNGKQVTESKV
>NC_012026.1|WP_010267981.1|802697_803741_-|phosphate-acyltransferase-PlsX
MVRDSGACVSVALDAMGADLGPEVAIKGADLVLSGAVPCKHKVHLSIYGKESAVLPVLGKYKLVEKNSVFIDTPDAVLCDDRPSFALRHRRKSSMWCAIEDVKKGVVASAVSAGNTGALMAISRYLLGTLQGIDRPAIATVLPSRKGSFVALDLGANAECAPGLLFQFAIMGRAFARAVLGVEHPKVGLLNIGAEDTKGTYNIQEAFALMRDAKQDINFYGYVEAKEAFDGVADVVVADGFSGNIMLKTCEAVAGLTLHILKKEICSSLMGRAAMRILRSCYFKRTSGSALDVRSYNGAVLLGLNGIVVKSHGSADATAFAHAIKEAVCVISQGDMAKEMISEVSNG
>NC_012026.1|WP_010265225.1|814750_814885_+|50S-ribosomal-protein-L34
MKRTFQPSRIVRKRRHGFRARMSTRWGRKILNRRRAKGRCLLCA
>NC_012026.1|WP_010265227.1|814824_815250_+|ribonuclease-P-protein-component
MGQKDSQQEACQGEVPFVRLKGVVTLKKRKEFARARFSGRSASSKGLLLQAVEDSAHPPGSDGLVRVGFTVSKKSGNSVVRNRIRRRLRVIAQDVISTSAARGFCYVFVSSSRLSETKLPVLRSSLVSCLKRLRLHVPVCD
>NC_012026.1|WP_010265232.1|815262_816582_+|sodium:alanine-symporter-family-protein
MGLLNTLLCIPAVAMLLFAGLRMSISSGWLQIRGLPLAISSLFAGERRKFSSVAAVCTILGGNLGVGNISGTAIALSSGGPGFIVWMVLIITVASIIKYANCYISTSTRVQAQNGKTFGGPVVYVKHAFGVKWAPCVVAFVTAVCAITVGNLVQVNSLAIPMSLMDLPPLAAGILVAFALFFVSALGMNFIAKTVSGMVPAMVLLYIALCFVVLVKCYDNILPSLTLILTSFLNLDSLKNGAALAFIAEILAVVQVGALRGIFATDIGLGLEGTVHSLVPNECDDKRFVAQQSLISLVSPFVVAIVAFVTTMVLLTTGVWSDAALESTNMCFTAFTSALGSGYVEYALLGLMFCFSFTTMLTWLMCSKEALLYVLGRDAYGKAWTAFFIAIAPLGSVCTVALLWDIADLAISLATIVNTIGMLVVASRYRDMFNVAHLR
>NC_012026.1|WP_010268053.1|816640_818887_-|ComEC/Rec2-family-competence-protein
MTFGLTVNAMQPEIGPFNIKKFWRLTIDALTSQACNFVIWIPALQAAGILLYFSLKHEPSFTLAALVACAMVALFLLTLINTRFLPLLIVAFGALGFISAHCRTALLFPKQPPISTFRRVYVNGATGLLKEINHKPGYAQLLVCDVESDKIQGICARLAARTAIDPTIRPGDILTFSGVIHPPPVSASKHGYDFARVAYFRGINAVGFTTSQVKLHERRSKVGFKEWVERIRDEIYARLVSGLRRDCAEIMAALLVGKRLGIRSEVLEDIRNSGLSHLFAISGLHLSFVAGISFMLTRNIFVLSETITLKHNIKKFAAVVAIIASFFYLLISGMPVSACRAFIMVTLTFVGIIVDKPNSVLRSISLAASIILLLTPETILLPSFQMSFAAVVALAGSCGVSRVVSAGSVVRYITAATSGSLIASIATAPYVVYHFNYFSVVGVVSNIIAIPLTAFVVIPLGLVYVITDCLLSGALVASPLEASVGLILYIAHYAAKVEWLAPTVRSIPPASVLFMTLGLLAFSWWRGTARIILGLLFALSGFLLALAYKTPDVLYGVGGVAVKEGDGQLYFAMRRGSTRGFSYSAWARENGQPKIINGGYFGQGKKLICMAGGCIYDSRVIISCDTEFILQRCSEADLVIHTGSGPRYPAPCSHVPHITYDDIRKLGAHYVSLSGSSVKVESARTRRPWHANAASFVQGKCAKCAARNRNAGDSTPFCNGLAIVTHSDNKLPVDRRRKVRVPADSIGP
>NC_012026.1|WP_012659041.1|819168_821532_-|phenylalanine--tRNA-ligase-subunit-beta
MRFAYSWLMDHLDTEWSASAVADELSRLGIEAELLHEGQDPAPFVVARVGAVKPHPSADKLKVCEVFDGADHMQVVCGASNVREGMLSVLARCGAVMPNGGPTIVEAVLRGVKSHGMLCSADELGVQGWRAQDSGILDLPSSDYEVGDSFFLSGAVIEVGVTPNRGDCLGLRGIARELVAAGVGALRPLPVDDLEVFGRSPIEAEMRSAGVLMGRYIKSIKNTGDSPRWIKDRLISAGVKTISCVVDIVNYVMLVLNRPMHVYDADKIQGGKLVVGASSNTDFHALDGKKYTLSKDNLVVTDGAGVVHCIAGVIGSTLSGCTLDSENIFLESAWYDPVDIAMSARKLKLSTDSSCRFERFTDPGCVKLGLDFASHMIVKYCGGVASDVVACGETPFSEGRVISFNPDSVGVIGSVEIEREEILRILTALGFDVNADKDRQWEVSVPSWRLADVRSSFDVVEEVLRMHGYDKVQEQPVVPCIAGPNGCNYDEKLSLIMLSAGLTEVVTWSFMSGAVAEKLGYSIEDLCVENPVSNKFDVMRPSLLPNLLQTAASNQACGCESVAIFELGEVYRFLDESERSICGVRSGDNVPRNPHGATRKFDFFDAKCDVLQVLTQLGIDGRLVEFRSCDRSYMHPARSADVYFRDILCGYVGELHPDLIGFFEMRSAAACFEIFLSRIPNVDDNPTGDEFLVHKYQPVKRDFAFVLDQGVQSQALVDVVGCIPGVAEVSVFDFYCGDNIPEGKVSIAVAVVMISKVGTMTESEIKDVSERIIALVAQKLGGELRAD
>NC_012026.1|WP_010268058.1|821535_821940_-|50S-ribosomal-protein-L17
MRHGISCRKFSRPTAHRLSMLANLAVSLIRHERIVTTVAKAKDLRPFVERLVTVGRRLAKKDPVRGRRLLLSKMGGDLDAVNKLLDVLAKRYARRPGGYTRILKNGFRAGDCAPIAIMEFVDRKEGEPKKVAEG
>NC_012026.1|WP_010265240.1|821980_823081_-|DNA-directed-RNA-polymerase-subunit-alpha
MAISDNGGGSVGLCYGSEFSISDHWDKLTRPSSIKVVGDGDLSRSAELIVEPLESGFALTLGNALRRVMMSSLRGFAVYGIEVEGVSHELTSLSGVREDVADLVLNLSMLRVKLLTSESRVLRLVAKGPGEITAAAIGDSEGCVVLNKDLHICTLGKDVDFSMKIYVNSGKGYVPASEYRAASRSGATSEVGPGFIATNALYSPVKKVAFRIESSRIGQFTDYDRLVISVETDGSISPDEAVAVSARVLQDQLQSFIGSEEVEGESRKKVDKEEGALPYDHNLLRKVDELELSVRSHNCLKNDNITYIGDLVQKTESDMLRTPNFGRKSLNEINEVLASMNLHLGMKVPNWPPESIENLSKQYSED
>NC_012026.1|WP_010268062.1|823101_823476_-|30S-ribosomal-protein-S11
MAVVKKRRNVVVGEVHIYATYNNVIVTIADQQGHVLVTTSAGACNFKGSKKATPYAAQETVARAVKAVVERNGMRTVSVCISGPGAGREAAIRAVQTCNLNVTSIRDTTKLPHNGCKLPKRRRV
>NC_012026.1|WP_010265244.1|823485_823857_-|30S-ribosomal-protein-S13
MARIGGVNVPVNKRVVVALTYIYGIGPSLASKICEGCGIGEDVLVSSLSDEDVVKIRNFIRSGCVVEADLRKEVAMNIKFLMDIGCYRGLRHRKKLPVRGQRTHTNARTRKGGTRLAVAVKKG
>NC_012026.1|WP_010268066.1|823920_824571_-|nucleoside-monophosphate-kinase
MEKSKVNLLILGAPGSGKGTQARLLAGHLDGLQVVSMGDLLRNEICERTETGKEIEDVMRSGILVDDALVCEMLFRKLRKVRQGFLLDGFPRNRHQAEFLTVVLRLINCGIDAVIKLEVDAEVVKCRLRGRLICKGCGKVSNVSFGTTVCDECGCRDYISRNDDVAETIKHRISEYESVIGELEQYYGKLVTRVDSNGSVDEVFQAIRDIVDVLNN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_012026_3	3.1\|812020\|40\|NC_012026\|CRT	812020-812059	40	NC_012026.1	809636-809675	0	1.0
NC_012026_3	3.1\|812020\|40\|NC_012026\|CRT	812020-812059	40	NC_012026.1	810747-810786	0	1.0
NC_012026_3	3.1\|812020\|40\|NC_012026\|CRT	812020-812059	40	NC_012026.1	811350-811389	0	1.0
NC_012026_3	3.1\|812020\|40\|NC_012026\|CRT	812020-812059	40	NC_012026.1	813625-813664	0	1.0
NC_012026_1	1.4\|809491\|40\|NC_012026\|PILER-CR	809491-809530	40	NC_012026.1	810899-810938	1	0.975
NC_012026_1	1.4\|809491\|40\|NC_012026\|PILER-CR	809491-809530	40	NC_012026.1	812394-812433	1	0.975
NC_012026_3	3.3\|812131\|40\|NC_012026\|CRT	812131-812170	40	NC_012026.1	809636-809675	1	0.975
NC_012026_3	3.3\|812131\|40\|NC_012026\|CRT	812131-812170	40	NC_012026.1	810747-810786	1	0.975
NC_012026_3	3.3\|812131\|40\|NC_012026\|CRT	812131-812170	40	NC_012026.1	811350-811389	1	0.975
NC_012026_3	3.3\|812131\|40\|NC_012026\|CRT	812131-812170	40	NC_012026.1	813625-813664	1	0.975
NC_012026_4	4.4\|813480\|40\|NC_012026\|PILER-CR	813480-813519	40	NC_012026.1	810899-810938	1	0.975
NC_012026_4	4.4\|813480\|40\|NC_012026\|PILER-CR	813480-813519	40	NC_012026.1	812394-812433	1	0.975

1. spacer 3.1|812020|40|NC_012026|CRT matches to position: 809636-809675, mismatch: 0, identity: 1.0

gtcaagctccttcctgagtgattcacgggcaatcacaggc	CRISPR spacer
gtcaagctccttcctgagtgattcacgggcaatcacaggc	Protospacer
****************************************

2. spacer 3.1|812020|40|NC_012026|CRT matches to position: 810747-810786, mismatch: 0, identity: 1.0

gtcaagctccttcctgagtgattcacgggcaatcacaggc	CRISPR spacer
gtcaagctccttcctgagtgattcacgggcaatcacaggc	Protospacer
****************************************

3. spacer 3.1|812020|40|NC_012026|CRT matches to position: 811350-811389, mismatch: 0, identity: 1.0

gtcaagctccttcctgagtgattcacgggcaatcacaggc	CRISPR spacer
gtcaagctccttcctgagtgattcacgggcaatcacaggc	Protospacer
****************************************

4. spacer 3.1|812020|40|NC_012026|CRT matches to position: 813625-813664, mismatch: 0, identity: 1.0

gtcaagctccttcctgagtgattcacgggcaatcacaggc	CRISPR spacer
gtcaagctccttcctgagtgattcacgggcaatcacaggc	Protospacer
****************************************

5. spacer 1.4|809491|40|NC_012026|PILER-CR matches to position: 810899-810938, mismatch: 1, identity: 0.975

tgagctccttcctgagtgattcacggacaatcacaggcct	CRISPR spacer
tgagctccttcctgagtgattcacgggcaatcacaggcct	Protospacer
**************************.*************

6. spacer 1.4|809491|40|NC_012026|PILER-CR matches to position: 812394-812433, mismatch: 1, identity: 0.975

tgagctccttcctgagtgattcacggacaatcacaggcct	CRISPR spacer
tgagctccttcctgagtgattcacgggcaatcacaggcct	Protospacer
**************************.*************

7. spacer 3.3|812131|40|NC_012026|CRT matches to position: 809636-809675, mismatch: 1, identity: 0.975

gtcaagctccttcctgagtgattcacgggcaatcacaagc	CRISPR spacer
gtcaagctccttcctgagtgattcacgggcaatcacaggc	Protospacer
*************************************.**

8. spacer 3.3|812131|40|NC_012026|CRT matches to position: 810747-810786, mismatch: 1, identity: 0.975

gtcaagctccttcctgagtgattcacgggcaatcacaagc	CRISPR spacer
gtcaagctccttcctgagtgattcacgggcaatcacaggc	Protospacer
*************************************.**

9. spacer 3.3|812131|40|NC_012026|CRT matches to position: 811350-811389, mismatch: 1, identity: 0.975

gtcaagctccttcctgagtgattcacgggcaatcacaagc	CRISPR spacer
gtcaagctccttcctgagtgattcacgggcaatcacaggc	Protospacer
*************************************.**

10. spacer 3.3|812131|40|NC_012026|CRT matches to position: 813625-813664, mismatch: 1, identity: 0.975

gtcaagctccttcctgagtgattcacgggcaatcacaagc	CRISPR spacer
gtcaagctccttcctgagtgattcacgggcaatcacaggc	Protospacer
*************************************.**

11. spacer 4.4|813480|40|NC_012026|PILER-CR matches to position: 810899-810938, mismatch: 1, identity: 0.975

tgagctccttcctgagtgattcacggacaatcacaggcct	CRISPR spacer
tgagctccttcctgagtgattcacgggcaatcacaggcct	Protospacer
**************************.*************

12. spacer 4.4|813480|40|NC_012026|PILER-CR matches to position: 812394-812433, mismatch: 1, identity: 0.975

tgagctccttcctgagtgattcacggacaatcacaggcct	CRISPR spacer
tgagctccttcctgagtgattcacgggcaatcacaggcct	Protospacer
**************************.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage