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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_012108 Desulfobacterium autotrophicum HRM2, complete sequence 6 crisprs WYL,cas1,cas2,cas6,cas7,cas5,cas3,cas4,Cas9_archaeal,csa3,RT,DEDDh,cas14j 3 7 8 1
NC_012109 Desulfobacterium autotrophicum HRM2 plasmid pHRM2a, complete sequence 0 crisprs DEDDh 0 0 0 0

Results visualization

1. NC_012108
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012108_1 629857-636222 Unclear ?
87 spacers
cas4,cas3,cas5,cas7,cas6,cas2,cas1,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012108_2 1053962-1054069 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012108_3 1150620-1150752 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012108_4 1913574-1913689 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012108_5 4299933-4300048 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_012108_6 4855356-4855475 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_012108_5 5.1|4299961|60|NC_012108|CRISPRCasFinder 4299961-4300020 60 NC_012108.1 1023727-1023786 0 1.0
NC_012108_6 6.1|4855387|58|NC_012108|CRISPRCasFinder 4855387-4855444 58 NC_012108.1 3746660-3746717 0 1.0
NC_012108_6 6.1|4855387|58|NC_012108|CRISPRCasFinder 4855387-4855444 58 NC_012108.1 4299881-4299938 0 1.0
NC_012108_3 3.1|1150664|45|NC_012108|CRISPRCasFinder 1150664-1150708 45 NC_012108.1 2406956-2407000 1 0.978
NC_012108_6 6.1|4855387|58|NC_012108|CRISPRCasFinder 4855387-4855444 58 NC_012108.1 1824195-1824252 1 0.983
NC_012108_6 6.1|4855387|58|NC_012108|CRISPRCasFinder 4855387-4855444 58 NC_012108.1 4424417-4424474 1 0.983
NC_012108_5 5.1|4299961|60|NC_012108|CRISPRCasFinder 4299961-4300020 60 NC_012108.1 114278-114337 2 0.967
NC_012108_5 5.1|4299961|60|NC_012108|CRISPRCasFinder 4299961-4300020 60 NC_012108.1 287609-287668 2 0.967
NC_012108_5 5.1|4299961|60|NC_012108|CRISPRCasFinder 4299961-4300020 60 NC_012108.1 389715-389774 2 0.967
NC_012108_5 5.1|4299961|60|NC_012108|CRISPRCasFinder 4299961-4300020 60 NC_012108.1 673228-673287 2 0.967
NC_012108_5 5.1|4299961|60|NC_012108|CRISPRCasFinder 4299961-4300020 60 NC_012108.1 1745968-1746027 2 0.967
NC_012108_5 5.1|4299961|60|NC_012108|CRISPRCasFinder 4299961-4300020 60 NC_012108.1 2406886-2406945 2 0.967
NC_012108_5 5.1|4299961|60|NC_012108|CRISPRCasFinder 4299961-4300020 60 NC_012108.1 2823040-2823099 2 0.967
NC_012108_5 5.1|4299961|60|NC_012108|CRISPRCasFinder 4299961-4300020 60 NC_012108.1 4852933-4852992 2 0.967
NC_012108_5 5.1|4299961|60|NC_012108|CRISPRCasFinder 4299961-4300020 60 NC_012108.1 4939105-4939164 2 0.967
NC_012108_6 6.1|4855387|58|NC_012108|CRISPRCasFinder 4855387-4855444 58 NC_012108.1 5263627-5263684 2 0.966

1. spacer 5.1|4299961|60|NC_012108|CRISPRCasFinder matches to position: 1023727-1023786, mismatch: 0, identity: 1.0

atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	CRISPR spacer
atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	Protospacer
************************************************************

2. spacer 6.1|4855387|58|NC_012108|CRISPRCasFinder matches to position: 3746660-3746717, mismatch: 0, identity: 1.0

acccaccaaagcattaacattggcggagtttccatatttgttgtggccggatgccatc	CRISPR spacer
acccaccaaagcattaacattggcggagtttccatatttgttgtggccggatgccatc	Protospacer
**********************************************************

3. spacer 6.1|4855387|58|NC_012108|CRISPRCasFinder matches to position: 4299881-4299938, mismatch: 0, identity: 1.0

acccaccaaagcattaacattggcggagtttccatatttgttgtggccggatgccatc	CRISPR spacer
acccaccaaagcattaacattggcggagtttccatatttgttgtggccggatgccatc	Protospacer
**********************************************************

4. spacer 3.1|1150664|45|NC_012108|CRISPRCasFinder matches to position: 2406956-2407000, mismatch: 1, identity: 0.978

tgcaatgctttggtgagtgtttcatataaccggcacggccggagc	CRISPR spacer
tgcaatgctttggtgggtgtttcatataaccggcacggccggagc	Protospacer
***************.*****************************

5. spacer 6.1|4855387|58|NC_012108|CRISPRCasFinder matches to position: 1824195-1824252, mismatch: 1, identity: 0.983

acccaccaaagcattaacattggcggagtttccatatttgttgtggccggatgccatc	CRISPR spacer
acccaccaaagcattaacattggcggaatttccatatttgttgtggccggatgccatc	Protospacer
***************************.******************************

6. spacer 6.1|4855387|58|NC_012108|CRISPRCasFinder matches to position: 4424417-4424474, mismatch: 1, identity: 0.983

acccaccaaagcattaacattggcggagtttccatatttgttgtggccggatgccatc	CRISPR spacer
acccaccaaagcattaacattggcggagtttccatattcgttgtggccggatgccatc	Protospacer
**************************************.*******************

7. spacer 5.1|4299961|60|NC_012108|CRISPRCasFinder matches to position: 114278-114337, mismatch: 2, identity: 0.967

atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	CRISPR spacer
atatgaaacactcgccaaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	Protospacer
*************.**.*******************************************

8. spacer 5.1|4299961|60|NC_012108|CRISPRCasFinder matches to position: 287609-287668, mismatch: 2, identity: 0.967

atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	CRISPR spacer
atatgaaacactcgccaaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	Protospacer
*************.**.*******************************************

9. spacer 5.1|4299961|60|NC_012108|CRISPRCasFinder matches to position: 389715-389774, mismatch: 2, identity: 0.967

atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	CRISPR spacer
atatgaaacactcgccaaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	Protospacer
*************.**.*******************************************

10. spacer 5.1|4299961|60|NC_012108|CRISPRCasFinder matches to position: 673228-673287, mismatch: 2, identity: 0.967

atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	CRISPR spacer
atatgaaacactcgccaaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	Protospacer
*************.**.*******************************************

11. spacer 5.1|4299961|60|NC_012108|CRISPRCasFinder matches to position: 1745968-1746027, mismatch: 2, identity: 0.967

atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	CRISPR spacer
atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgtggccaga	Protospacer
**************************************************** ****.**

12. spacer 5.1|4299961|60|NC_012108|CRISPRCasFinder matches to position: 2406886-2406945, mismatch: 2, identity: 0.967

atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	CRISPR spacer
atatgaaacactcgccaaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	Protospacer
*************.**.*******************************************

13. spacer 5.1|4299961|60|NC_012108|CRISPRCasFinder matches to position: 2823040-2823099, mismatch: 2, identity: 0.967

atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	CRISPR spacer
atatgaaacactcgccaaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	Protospacer
*************.**.*******************************************

14. spacer 5.1|4299961|60|NC_012108|CRISPRCasFinder matches to position: 4852933-4852992, mismatch: 2, identity: 0.967

atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	CRISPR spacer
atatgaaacactcgccaaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	Protospacer
*************.**.*******************************************

15. spacer 5.1|4299961|60|NC_012108|CRISPRCasFinder matches to position: 4939105-4939164, mismatch: 2, identity: 0.967

atatgaaacactcaccgaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	CRISPR spacer
atatgaaacactcgccaaagcattgtcaatgaaggtgtttcaaaattcgttgaggccgga	Protospacer
*************.**.*******************************************

16. spacer 6.1|4855387|58|NC_012108|CRISPRCasFinder matches to position: 5263627-5263684, mismatch: 2, identity: 0.966

acccaccaaagcattaacattggcggagtttccatatttgttgtggccggatgccatc	CRISPR spacer
actcaccaaagcattaacattggcggagtttccatattcgttgtggccggatgccatc	Protospacer
**.***********************************.*******************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_012108_1 1.14|630838|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT 630838-630872 35 NZ_CP030127 Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence 847717-847751 8 0.771
NC_012108_1 1.24|631560|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT 631560-631594 35 MT501516 Vibrio phage vB_VpaP_MGD1, complete genome 42380-42414 8 0.771
NC_012108_1 1.24|631560|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT 631560-631594 35 MF754112 Vibrio phage vB_VpaP_KF2, complete genome 7101-7135 8 0.771
NC_012108_1 1.18|631126|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT 631126-631160 35 NZ_CP036516 Lichenihabitans psoromatis strain PAMC 29148 plasmid p_unnamed1, complete sequence 125914-125948 9 0.743
NC_012108_1 1.68|634768|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT 634768-634802 35 AP014218 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C89-MedDCM-OCT-S40-C163, *** SEQUENCING IN PROGRESS *** 4519-4553 9 0.743
NC_012108_1 1.10|630550|36|NC_012108|PILER-CR,CRISPRCasFinder,CRT 630550-630585 36 NZ_CP021468 Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1 40204-40239 10 0.722
NC_012108_1 1.10|630550|36|NC_012108|PILER-CR,CRISPRCasFinder,CRT 630550-630585 36 NZ_CP023038 Komagataeibacter saccharivorans strain CV1 plasmid unnamed2, complete sequence 57156-57191 10 0.722
NC_012108_1 1.43|632941|34|NC_012108|PILER-CR,CRISPRCasFinder,CRT 632941-632974 34 NC_013855 Azospirillum sp. B510 plasmid pAB510a, complete sequence 7279-7312 10 0.706
NC_012108_1 1.26|631705|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT 631705-631739 35 NZ_KX710093 Leclercia adecarboxylata strain pP10164 plasmid pP10164-2, complete sequence 130826-130860 11 0.686

1. spacer 1.14|630838|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.771

cccagaccgcattggatgccggagcagatatttta	CRISPR spacer
cccagaccgcacaggatgccggagcggtggttctt	Protospacer
***********. ************.*  .**.* 

2. spacer 1.24|631560|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT matches to MT501516 (Vibrio phage vB_VpaP_MGD1, complete genome) position: , mismatch: 8, identity: 0.771

gaacttccagatgctccagaagatgcaaaagaagt	CRISPR spacer
gaacttccagaagctccagaagctgtacgacacgg	Protospacer
*********** ********** **.* .* * * 

3. spacer 1.24|631560|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT matches to MF754112 (Vibrio phage vB_VpaP_KF2, complete genome) position: , mismatch: 8, identity: 0.771

gaacttccagatgctccagaagatgcaaaagaagt	CRISPR spacer
gaacttccagaagctccagaagctgtatgacacgg	Protospacer
*********** ********** **.* .* * * 

4. spacer 1.18|631126|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036516 (Lichenihabitans psoromatis strain PAMC 29148 plasmid p_unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

aaagacggcagcctgattgaaaccagggcggctgg--	CRISPR spacer
cgagccggcagcctgattgcaaccaggaca--tagtc	Protospacer
 .** ************** *******.*.  *.*  

5. spacer 1.68|634768|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT matches to AP014218 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C89-MedDCM-OCT-S40-C163, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.743

tctgtatttttttcatattcaaatagtaacctcct---	CRISPR spacer
tctgcattttcttcatattcaaa---taacttatcaag	Protospacer
****.*****.************   ****.* ..   

6. spacer 1.10|630550|36|NC_012108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021468 (Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1) position: , mismatch: 10, identity: 0.722

agtaaaccatcaccgtcatcatcgtgaaaagtaccc	CRISPR spacer
agaaaaccatccccgtcatcatcgtgggtggcggac	Protospacer
** ******** **************.. .*..  *

7. spacer 1.10|630550|36|NC_012108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023038 (Komagataeibacter saccharivorans strain CV1 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.722

agtaaaccatcaccgtcatcatcgtgaaaagtaccc	CRISPR spacer
agaaaaccatccccgtcatcatcgtgggtggcggac	Protospacer
** ******** **************.. .*..  *

8. spacer 1.43|632941|34|NC_012108|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 10, identity: 0.706

attttgccctttcaagctcgacctcagcccgttt	CRISPR spacer
gcggtgccctttccagctccacctcagcgggatc	Protospacer
..  ********* ***** ********  * *.

9. spacer 1.26|631705|35|NC_012108|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX710093 (Leclercia adecarboxylata strain pP10164 plasmid pP10164-2, complete sequence) position: , mismatch: 11, identity: 0.686

accgtgaaaccggagtcaacctgcttaaagagatg	CRISPR spacer
ttgaccaaacccgagtaaacctgcttaaagattgg	Protospacer
 . .. ***** **** **************   *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1388877 : 1397909 9 Planktothrix_phage(16.67%) tRNA NA
DBSCAN-SWA_2 1966889 : 2032583 56 Acinetobacter_phage(23.08%) transposase,integrase,protease attL 1990522:1990568|attR 1999621:1999667
DBSCAN-SWA_3 2220982 : 2259700 38 Lactococcus_phage(100.0%) transposase,integrase,protease attL 2216223:2216238|attR 2223560:2223575
DBSCAN-SWA_4 2841851 : 2905569 54 Enterobacteria_phage(30.0%) transposase,tRNA NA
DBSCAN-SWA_5 2983628 : 3011236 17 Pelagibacter_phage(25.0%) transposase,integrase attL 2980678:2980694|attR 3017405:3017421
DBSCAN-SWA_6 3542212 : 3550490 11 Staphylococcus_phage(42.86%) tRNA NA
DBSCAN-SWA_7 3878968 : 3936914 58 Bacillus_thuringiensis_phage(16.67%) transposase,integrase attL 3873473:3873494|attR 3942127:3942148
DBSCAN-SWA_8 4916221 : 5032542 100 Leptospira_phage(25.0%) transposase,integrase attL 4977092:4977106|attR 5032585:5032599
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_012108.1|WP_015906186.1|4945408_4945642_-|hypothetical-protein 4945408_4945642_- 77 aa aa NA NA NA 4916221-5032542 yes