Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_011593 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088, complete sequence 5 crisprs c2c9_V-U4,DEDDh,WYL,cas14j,cas3 0 1 6 0

Results visualization

1. NC_011593
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011593_1 932425-932581 Orphan NA
2 spacers
WYL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011593_2 1257541-1257628 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011593_3 1989985-1990067 Unclear NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011593_4 2438564-2438649 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011593_5 2555486-2555568 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_011593_3 3.1|1990008|37|NC_011593|CRISPRCasFinder 1990008-1990044 37 NC_047902 Pseudomonas phage PMBT3, complete genome 3867-3903 8 0.784

1. spacer 3.1|1990008|37|NC_011593|CRISPRCasFinder matches to NC_047902 (Pseudomonas phage PMBT3, complete genome) position: , mismatch: 8, identity: 0.784

cgccaactcggtggacgcgagcaagatcgtggccgga---	CRISPR spacer
cgccaactcggtgaccgcgagcaaga---tggctgaggtt	Protospacer
*************. ***********   ****.*..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1164181 : 1212809 42 Staphylococcus_phage(33.33%) integrase,transposase,tRNA attL 1155411:1155428|attR 1201526:1201543
DBSCAN-SWA_2 1296635 : 1309432 15 Bifidobacterium_phage(63.64%) capsid,tail,portal NA
DBSCAN-SWA_3 1491874 : 1527331 49 Mycobacterium_phage(25.0%) integrase,transposase attL 1485810:1485827|attR 1524212:1524229
DBSCAN-SWA_4 1806019 : 1870597 58 Lactococcus_phage(17.65%) integrase,holin,transposase,protease attL 1801611:1801629|attR 1865950:1865968
DBSCAN-SWA_5 1974227 : 1986101 15 Propionibacterium_phage(25.0%) capsid,portal,terminase NA
DBSCAN-SWA_6 2800739 : 2810516 7 Mycobacterium_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage