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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_011026 Chloroherpeton thalassium ATCC 35110, complete sequence 11 crisprs cas3,cmr1gr7,cmr6gr7,cmr5gr11,cmr4gr7,csm6,cmr3gr5,cas10,csa3,Cas9_archaeal,cas7,cas8b6,cas5,cas6,WYL,DEDDh,cas4,cas2,cas1 0 18 1 0

Results visualization

1. NC_011026
NC_011026 0400000800000120000016000002000000240000028000003200000 CRISPR 1 2 3 4 5 6 7 8 9 10 11 Self-targeting Prophage 1 anti-CRISPR
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011026_1 33988-34243 Orphan NA
2 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011026_2 442017-442111 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011026_3 783080-783201 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011026_4 1070142-1070254 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011026_5 1569992-1570109 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011026_6 1624000-1624147 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011026_7 1653832-1653959 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011026_8 1815689-1815885 Unclear NA
2 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011026_9 2084564-2084936 Orphan NA
4 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011026_10 2683900-2694522 Orphan I-A,II-B,III-A
160 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011026_11 2813147-2819595 Unclear I-A,II-B,III-A
97 spacers
cas4,cas2,cas1,cas6

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_011026_11 11.87|2818868|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2818868-2818903 36 NC_011973 Bacillus cereus Q1 plasmid pBc239, complete sequence 233880-233915 7 0.806
NC_011026_11 11.87|2818868|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2818868-2818903 36 NZ_CP022346 Bacillus thuringiensis strain c25 plasmid unnamed1, complete sequence 42422-42457 7 0.806
NC_011026_11 11.87|2818868|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2818868-2818903 36 NC_018492 Bacillus cereus FRI-35 plasmid p01, complete sequence 141140-141175 7 0.806
NC_011026_10 10.87|2689621|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2689621-2689656 36 MN694568 Marine virus AFVG_250M879, complete genome 36178-36213 8 0.778
NC_011026_11 11.32|2815227|35|NC_011026|CRISPRCasFinder,CRT 2815227-2815261 35 NZ_CP014851 Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence 100007-100041 8 0.771
NC_011026_10 10.56|2687578|35|NC_011026|CRISPRCasFinder,CRT 2687578-2687612 35 AP013457 Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C20 32164-32198 9 0.743
NC_011026_10 10.60|2687841|35|NC_011026|CRISPRCasFinder,CRT 2687841-2687875 35 NZ_CP041250 Raoultella electrica strain DSM 102253 plasmid unnamed3, complete sequence 14986-15020 9 0.743
NC_011026_10 10.60|2687841|35|NC_011026|CRISPRCasFinder,CRT 2687841-2687875 35 NZ_CP044049 Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence 189140-189174 9 0.743
NC_011026_10 10.60|2687841|35|NC_011026|CRISPRCasFinder,CRT 2687841-2687875 35 NC_009651 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5, complete sequence 49621-49655 9 0.743
NC_011026_10 10.68|2688368|35|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2688368-2688402 35 NZ_CP041250 Raoultella electrica strain DSM 102253 plasmid unnamed3, complete sequence 14986-15020 9 0.743
NC_011026_10 10.68|2688368|35|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2688368-2688402 35 NZ_CP044049 Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence 189140-189174 9 0.743
NC_011026_10 10.68|2688368|35|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2688368-2688402 35 NC_009651 Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5, complete sequence 49621-49655 9 0.743
NC_011026_10 10.132|2692605|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2692605-2692640 36 MW042806 Klebsiella phage 066046, complete genome 22343-22378 9 0.75
NC_011026_10 10.132|2692605|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2692605-2692640 36 MK521905 Klebsiella phage vB_KpnP_FZ12, complete genome 36285-36320 9 0.75
NC_011026_10 10.132|2692605|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2692605-2692640 36 MT425185 Klebsiella phage Kp_Pokalde_002, complete genome 40520-40555 9 0.75
NC_011026_10 10.216|2687579|35|NC_011026|PILER-CR 2687579-2687613 35 AP013457 Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C20 32164-32198 9 0.743
NC_011026_11 11.61|2817148|37|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2817148-2817184 37 MN855781 Bacteriophage sp. isolate 39, complete genome 11907-11943 9 0.757
NC_011026_10 10.92|2689953|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2689953-2689988 36 NZ_LR215038 Mycoplasma maculosum strain NCTC10168 plasmid 2 2974-3009 10 0.722
NC_011026_10 10.3|2684062|38|NC_011026|CRISPRCasFinder,CRT 2684062-2684099 38 KP211958 Cyanophage P-TIM40, complete genome 138369-138406 11 0.711
NC_011026_10 10.131|2692539|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2692539-2692574 36 NZ_CP022523 Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence 1151926-1151961 11 0.694
NC_011026_10 10.163|2684063|38|NC_011026|PILER-CR 2684063-2684100 38 KP211958 Cyanophage P-TIM40, complete genome 138369-138406 11 0.711
NC_011026_11 11.71|2817809|35|NC_011026|CRISPRCasFinder,CRT,PILER-CR 2817809-2817843 35 NZ_CP008817 Ochrobactrum anthropi strain OAB plasmid 1, complete sequence 34965-34999 11 0.686
NC_011026_10 10.11|2684595|37|NC_011026|CRISPRCasFinder,CRT 2684595-2684631 37 MN693050 Marine virus AFVG_25M448, complete genome 4368-4404 13 0.649
NC_011026_10 10.12|2684662|37|NC_011026|CRISPRCasFinder,CRT 2684662-2684698 37 MN693050 Marine virus AFVG_25M448, complete genome 4368-4404 13 0.649
NC_011026_10 10.171|2684596|37|NC_011026|PILER-CR 2684596-2684632 37 MN693050 Marine virus AFVG_25M448, complete genome 4368-4404 13 0.649
NC_011026_10 10.172|2684663|37|NC_011026|PILER-CR 2684663-2684699 37 MN693050 Marine virus AFVG_25M448, complete genome 4368-4404 13 0.649

1. spacer 11.87|2818868|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to NC_011973 (Bacillus cereus Q1 plasmid pBc239, complete sequence) position: , mismatch: 7, identity: 0.806

atatcaaaagaaagaaaagaaaccgaaatggcaaac	CRISPR spacer
atataaaaagaaagaaaagaaagcgaaaaagtaata	Protospacer
**** ***************** ***** .*.**  

2. spacer 11.87|2818868|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022346 (Bacillus thuringiensis strain c25 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

atatcaaaagaaagaaaagaaaccgaaatggcaaac	CRISPR spacer
atataaaaagaaagaaaagaaagcgaaaaagtaata	Protospacer
**** ***************** ***** .*.**  

3. spacer 11.87|2818868|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to NC_018492 (Bacillus cereus FRI-35 plasmid p01, complete sequence) position: , mismatch: 7, identity: 0.806

atatcaaaagaaagaaaagaaaccgaaatggcaaac	CRISPR spacer
atataaaaagaaagaaaagaaagcgaaaaagtaata	Protospacer
**** ***************** ***** .*.**  

4. spacer 10.87|2689621|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to MN694568 (Marine virus AFVG_250M879, complete genome) position: , mismatch: 8, identity: 0.778

gagattta---aaatgaaagtatcaaaagacacatcaaa	CRISPR spacer
---acttatctaaatgaaactatcacaagacacatcact	Protospacer
   *.***   ******** ***** ***********  

5. spacer 11.32|2815227|35|NC_011026|CRISPRCasFinder,CRT matches to NZ_CP014851 (Bacillus thuringiensis strain HD12 plasmid pHD120112, complete sequence) position: , mismatch: 8, identity: 0.771

ttttccgagacaaaccagagccgaaaccagagcca	CRISPR spacer
ttaaatctgaaaaaccagagccgaaaccagagccg	Protospacer
**   .  ** ***********************.

6. spacer 10.56|2687578|35|NC_011026|CRISPRCasFinder,CRT matches to AP013457 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C20) position: , mismatch: 9, identity: 0.743

acgattaaaatcacaaactgagataaacaaaattg	CRISPR spacer
attaggatcatcacaaacagagataaataaaattt	Protospacer
*. *  *  ********* ********.****** 

7. spacer 10.60|2687841|35|NC_011026|CRISPRCasFinder,CRT matches to NZ_CP041250 (Raoultella electrica strain DSM 102253 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.743

cattcctttcctgtttgttttgttgttgaacccgc	CRISPR spacer
cgttcctttcatgtttgttttgttcttaatgctaa	Protospacer
*.******** ************* **.*  *.. 

8. spacer 10.60|2687841|35|NC_011026|CRISPRCasFinder,CRT matches to NZ_CP044049 (Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

cattcctttcctgtttgttttgttgttgaacccgc	CRISPR spacer
cgttcctttcatgtttgttttgttattaatgctaa	Protospacer
*.******** *************.**.*  *.. 

9. spacer 10.60|2687841|35|NC_011026|CRISPRCasFinder,CRT matches to NC_009651 (Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5, complete sequence) position: , mismatch: 9, identity: 0.743

cattcctttcctgtttgttttgttgttgaacccgc	CRISPR spacer
cgttcctttcatgtttgttttgttcttaatgctaa	Protospacer
*.******** ************* **.*  *.. 

10. spacer 10.68|2688368|35|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041250 (Raoultella electrica strain DSM 102253 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.743

cattcctttcctgtttgttttgttgttgaacccgc	CRISPR spacer
cgttcctttcatgtttgttttgttcttaatgctaa	Protospacer
*.******** ************* **.*  *.. 

11. spacer 10.68|2688368|35|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044049 (Klebsiella variicola strain FDAARGOS_627 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

cattcctttcctgtttgttttgttgttgaacccgc	CRISPR spacer
cgttcctttcatgtttgttttgttattaatgctaa	Protospacer
*.******** *************.**.*  *.. 

12. spacer 10.68|2688368|35|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to NC_009651 (Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5, complete sequence) position: , mismatch: 9, identity: 0.743

cattcctttcctgtttgttttgttgttgaacccgc	CRISPR spacer
cgttcctttcatgtttgttttgttcttaatgctaa	Protospacer
*.******** ************* **.*  *.. 

13. spacer 10.132|2692605|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to MW042806 (Klebsiella phage 066046, complete genome) position: , mismatch: 9, identity: 0.75

cttcgtcagtctgaacctgccaacgttttgcttccc	CRISPR spacer
agaccacagtctgaacctgccactgttttgctttct	Protospacer
   *  **************** .*********.*.

14. spacer 10.132|2692605|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to MK521905 (Klebsiella phage vB_KpnP_FZ12, complete genome) position: , mismatch: 9, identity: 0.75

cttcgtcagtctgaacctgccaacgttttgcttccc	CRISPR spacer
agaccacagtctgaacctgccactgttttgctttct	Protospacer
   *  **************** .*********.*.

15. spacer 10.132|2692605|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to MT425185 (Klebsiella phage Kp_Pokalde_002, complete genome) position: , mismatch: 9, identity: 0.75

cttcgtcagtctgaacctgccaacgttttgcttccc	CRISPR spacer
agaccacagtctgaacctgccactgttttgctttct	Protospacer
   *  **************** .*********.*.

16. spacer 10.216|2687579|35|NC_011026|PILER-CR matches to AP013457 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C20) position: , mismatch: 9, identity: 0.743

acgattaaaatcacaaactgagataaacaaaattg	CRISPR spacer
attaggatcatcacaaacagagataaataaaattt	Protospacer
*. *  *  ********* ********.****** 

17. spacer 11.61|2817148|37|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to MN855781 (Bacteriophage sp. isolate 39, complete genome) position: , mismatch: 9, identity: 0.757

ttaaacagcttgaaaaaaatgtgtttttaattgaaga	CRISPR spacer
ataaacagcttgaaaaagatatgtttttatccttagg	Protospacer
 ****************.**.******** ..  **.

18. spacer 10.92|2689953|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR215038 (Mycoplasma maculosum strain NCTC10168 plasmid 2) position: , mismatch: 10, identity: 0.722

ttttaatttttttgtataaaaatcatgtcaagaagt	CRISPR spacer
ttttaatttttttgtttaaatatcatttttgttctt	Protospacer
*************** **** ***** *. .    *

19. spacer 10.3|2684062|38|NC_011026|CRISPRCasFinder,CRT matches to KP211958 (Cyanophage P-TIM40, complete genome) position: , mismatch: 11, identity: 0.711

aactcttgtatttcttcaagagttttttgataaagaaa	CRISPR spacer
ctttcttgtattgcttcaagcgttttttgacagtcgca	Protospacer
  .********* ******* *********.*.  . *

20. spacer 10.131|2692539|36|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022523 (Pseudoalteromonas sp. NC201 plasmid pNC201, complete sequence) position: , mismatch: 11, identity: 0.694

caccaaacgccacttcagccctaacatatctcttac	CRISPR spacer
agccaatcgccacttcagccccaacataaacgaaaa	Protospacer
 .**** **************.******  .   * 

21. spacer 10.163|2684063|38|NC_011026|PILER-CR matches to KP211958 (Cyanophage P-TIM40, complete genome) position: , mismatch: 11, identity: 0.711

aactcttgtatttcttcaagagttttttgataaagaaa	CRISPR spacer
ctttcttgtattgcttcaagcgttttttgacagtcgca	Protospacer
  .********* ******* *********.*.  . *

22. spacer 11.71|2817809|35|NC_011026|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP008817 (Ochrobactrum anthropi strain OAB plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.686

tccgctgttccgcgagaagcccgcagagccaccag	CRISPR spacer
gccgctgttacgcgaaaagcccgcaggctggctgt	Protospacer
 ******** *****.**********. . .*.. 

23. spacer 10.11|2684595|37|NC_011026|CRISPRCasFinder,CRT matches to MN693050 (Marine virus AFVG_25M448, complete genome) position: , mismatch: 13, identity: 0.649

ctatattttgtaatgcgattttaatttgattgaaaaa	CRISPR spacer
tcgctgtttgaaatgagattttaatttgattgttgtc	Protospacer
....  **** **** ****************  .  

24. spacer 10.12|2684662|37|NC_011026|CRISPRCasFinder,CRT matches to MN693050 (Marine virus AFVG_25M448, complete genome) position: , mismatch: 13, identity: 0.649

ctatattttgtaatgcgattttaatttgattgaaaaa	CRISPR spacer
tcgctgtttgaaatgagattttaatttgattgttgtc	Protospacer
....  **** **** ****************  .  

25. spacer 10.171|2684596|37|NC_011026|PILER-CR matches to MN693050 (Marine virus AFVG_25M448, complete genome) position: , mismatch: 13, identity: 0.649

ctatattttgtaatgcgattttaatttgattgaaaaa	CRISPR spacer
tcgctgtttgaaatgagattttaatttgattgttgtc	Protospacer
....  **** **** ****************  .  

26. spacer 10.172|2684663|37|NC_011026|PILER-CR matches to MN693050 (Marine virus AFVG_25M448, complete genome) position: , mismatch: 13, identity: 0.649

ctatattttgtaatgcgattttaatttgattgaaaaa	CRISPR spacer
tcgctgtttgaaatgagattttaatttgattgttgtc	Protospacer
....  **** **** ****************  .  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 283775 : 314046 31 Burkholderia_phage(28.57%) plate,tail,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage