CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_010831	Chlorobium phaeobacteroides BS1, complete sequence	11 crisprs	csa3,PD-DExK,PrimPol,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,DEDDh,RT,WYL,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,csx15	2	17	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_010831_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010831_1

1353854-1354412

TypeIII

Consensus_repeat	Method
GTAG--GAAGACCCGATTAGCTACAGGGGATTGAGAC	PILER-CR
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	CRISPRCasFinder
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	CRT

7 spacers

cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6

The CRISPR arrays of NC_010831_1

>merge|NC_010831|1|1353854-1354412|PILER-CR,CRISPRCasFinder,CRT
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGACTGACATCCGCTCGATCTTCAAGTTTTGGTTCGTACCAGTGGTAGGAAGACCCGATTAGCTACAGGGGATTGAGACCGGTATCCGAACGCAGCGCCGCCGTTCTCGAGCTCATGAAGTAGGAAGACCCGATTAGCTACAGGGGATTGAGACAGACAGAAATTTTATCAACACATACGACAAGAGAGGTGGTAGGAAGACCCGATTAGCTACAGGGGATTGAGACTCTTTTTTTCTCCTTGTGCCATAAGGCAACTCCTTTTGGTAGGAAGACCCGATTAGCTACAGGGGATTGAGACTGAATATCTGTGTCGTTGTTCGAGATGCTCCCATCATTACTTGTAGGAAGACCCGATTAGCTACAGGGGATTGAGACAATTGCAGAATTTTCATTATCTGCCCCGGTGTAATTTCCTGTAGGAAGACCCGATTAGCTACAGGGGATTGAGACTCCCGGATGATCTCCGGCGTGAGGAGTTCGAGCATCTCCTGGTAGGACGACCCGATTAGCTACAGGGGACAGGGGG

>NC_010831|1|1|1353854-1354336|PILER-CR
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	TGACATCCGCTCGATCTTCAAGTTTTGGTTCGTACCAGTG
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	CGGTATCCGAACGCAGCGCCGCCGTTCTCGAGCTCATGAA
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	AGACAGAAATTTTATCAACACATACGACAAGAGAGGTG
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	TCTTTTTTTCTCCTTGTGCCATAAGGCAACTCCTTTTG
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	TGAATATCTGTGTCGTTGTTCGAGATGCTCCCATCATTACTT
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	AATTGCAGAATTTTCATTATCTGCCCCGGTGTAATTTCCT
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC

>NC_010831|1|1|1353854-1354412|CRISPRCasFinder
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	TGACATCCGCTCGATCTTCAAGTTTTGGTTCGTACCAGTG
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	CGGTATCCGAACGCAGCGCCGCCGTTCTCGAGCTCATGAA
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	AGACAGAAATTTTATCAACACATACGACAAGAGAGGTG
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	TCTTTTTTTCTCCTTGTGCCATAAGGCAACTCCTTTTG
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	TGAATATCTGTGTCGTTGTTCGAGATGCTCCCATCATTACTT
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	AATTGCAGAATTTTCATTATCTGCCCCGGTGTAATTTCCT
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	TCCCGGATGATCTCCGGCGTGAGGAGTTCGAGCATCTCCTG
GTAGGACGACCCGATTAGCTACAGGGGACAGGGGG

>NC_010831|1|1|1353854-1354412|CRT
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	TGACATCCGCTCGATCTTCAAGTTTTGGTTCGTACCAGTG
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	CGGTATCCGAACGCAGCGCCGCCGTTCTCGAGCTCATGAA
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	AGACAGAAATTTTATCAACACATACGACAAGAGAGGTG
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	TCTTTTTTTCTCCTTGTGCCATAAGGCAACTCCTTTTG
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	TGAATATCTGTGTCGTTGTTCGAGATGCTCCCATCATTACTT
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	AATTGCAGAATTTTCATTATCTGCCCCGGTGTAATTTCCT
GTAGGAAGACCCGATTAGCTACAGGGGATTGAGAC	TCCCGGATGATCTCCGGCGTGAGGAGTTCGAGCATCTCCTG
GTAGGACGACCCGATTAGCTACAGGGGACAGGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010831.1\|WP_012474657.1\|1344226_1344982_+\|PhoU-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273990
NC_010831.1\|WP_012474389.1\|1364862_1366269_-\|IS1380-like-element-ISCph7-family-transposase	unknown	unknown	gnl\|CDD\|379340
NC_010831.1\|WP_012474663.1\|1349606_1350881_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012474677.1\|1367017_1367230_+\|addiction-module-protein	unknown	unknown	gnl\|CDD\|378247
NC_010831.1\|WP_153303910.1\|1360482_1361523_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|224483
NC_010831.1\|WP_012474675.1\|1361531_1362674_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NC_010831.1\|WP_012474668.1\|1354784_1355318_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012474665.1\|1351657_1352539_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NC_010831.1\|WP_153303909.1\|1358116_1359249_-\|IS630-like-element-ISCph1-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_010831.1\|WP_012474666.1\|1352498_1353254_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373102
NC_010831.1\|WP_012474660.1\|1346824_1348063_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NC_010831.1\|WP_012474662.1\|1349294_1349558_+\|Nif11-like-leader-peptide-family-natural-product-precursor	unknown	unknown	gnl\|CDD\|369562
NC_010831.1\|WP_041471560.1\|1345556_1346828_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012474672.1\|1359333_1359759_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NC_010831.1\|WP_012474676.1\|1362680_1363679_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NC_010831.1\|WP_012474664.1\|1351318_1351648_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012474661.1\|1348178_1349042_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NC_010831.1\|WP_012474658.1\|1345132_1345540_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372725
NC_010831.1\|WP_012474669.1\|1355546_1358099_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_010831.1\|WP_012474673.1\|1359761_1360496_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274212

Protein	Function_ID	Function_description	E-value
NC_010831.1\|WP_012474657.1\|1344226_1344982_+\|PhoU-family-transcriptional-regulator	gnl\|CDD\|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	2.29148e-15
NC_010831.1\|WP_012474677.1\|1367017_1367230_+\|addiction-module-protein	gnl\|CDD\|378247	pfam09720, Unstab_antitox, Putative addiction module component. This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death - although these gene-pairs are usually found on the bacterial main chromosome.	3.52175e-07
NC_010831.1\|WP_153303910.1\|1360482_1361523_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|224483	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.0612e-22
NC_010831.1\|WP_012474675.1\|1361531_1362674_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	4.69561e-29
NC_010831.1\|WP_012474665.1\|1351657_1352539_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	1.33559e-43
NC_010831.1\|WP_153303909.1\|1358116_1359249_-\|IS630-like-element-ISCph1-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.50738e-28
NC_010831.1\|WP_012474666.1\|1352498_1353254_+\|hypothetical-protein	gnl\|CDD\|373102	pfam14511, RE_EcoO109I, Type II restriction endonuclease EcoO109I. This is a family of Type II restriction endonucleases.	7.71166e-117
NC_010831.1\|WP_012474660.1\|1346824_1348063_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	3.05945e-30
NC_010831.1\|WP_012474661.1\|1348178_1349042_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.41082e-30
NC_010831.1\|WP_012474389.1\|1364862_1366269_-\|IS1380-like-element-ISCph7-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	0
NC_010831.1\|WP_012474672.1\|1359333_1359759_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.32039e-09
NC_010831.1\|WP_012474676.1\|1362680_1363679_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	1.34464e-08
NC_010831.1\|WP_012474662.1\|1349294_1349558_+\|Nif11-like-leader-peptide-family-natural-product-precursor	gnl\|CDD\|369562	pfam07862, Nif11, Nif11 domain. This domain is found mainly in the Cyanobacteria and in Proteobacteria such as the nitrogen-fixing bacterium Azotobacter vinelandii. It is found in Nif11, a protein described in Azotobacter as linked to nitrogen fixation. It also constitutes a leader peptide in Nif11-derived peptides (N11P), which are thought to be post-translationally modified microcins derived from a putative nitrogen-fixing protein. N11P sequences have a classic leader peptide cleavage motif, usually Gly-Gly, which marks the end of family-wide similarity area and the beginning of a low-complexity region rich in Cys, Gly and Ser.	5.5659e-07
NC_010831.1\|WP_012474658.1\|1345132_1345540_+\|hypothetical-protein	gnl\|CDD\|372725	pfam13781, DoxX_3, DoxX-like family. This family of uncharacterized proteins are related to DoxX pfam07681.	1.91279e-26
NC_010831.1\|WP_012474669.1\|1355546_1358099_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	3.90583e-129
NC_010831.1\|WP_012474673.1\|1359761_1360496_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|274212	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3. Members of this CRISPR-associated (cas) gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm3, for CRISPR/cas Subtype Mtube, protein 3.	8.80357e-64

>NC_010831.1|WP_012474666.1|1352498_1353254_+|hypothetical-protein
MKPILSSDVSKYVEDNIGTFHQKRISNLDRLKLNKVLERKNPYLFRAKHLLTAEEIVKGLVDAHISSNEETIFGDWLEGLAIFINGKVYGGRKSGIPGIDLEFDKGSVRYIVNIKSGPNWGNSSQIAKMKSDFRTAAKTLRTSNSGINVTAVNGCCYGKTRTSDKGDYYKYCGQEFWEFISGDSDLFVEIIEPLGHKAREKNAEFQQSYSQMINKFTMQFGAGYCDDNGSINWIKLLKHNSASSHAKDSDA
>NC_010831.1|WP_012474665.1|1351657_1352539_+|site-specific-DNA-methyltransferase
MEIRTDLYLGDSQEELKKIPDNSVDLIVTSPPYADQRKKTYGGIHPDHYVSWFLPIAEQLMRVLKPTGTFVLNIKEKVVNGERSTYVMELILEMRRQQGWLWTEEFIWHKKNCYPGKWPNRFRDSWERLIQFNKSKQFYMNQEAVMVPMGEWSKTRLKNLSETDKVRDESKVGSGFGKNISNWLDRKKAYPTNVLHLATECNNKKHSAAFPEGLPEWFIRLFTKEGDTVLDPFMGSGTTNIVASRMKRHSIGVDILPEYYSMVCDELKPQELYLLEQTKQYETDTIKRRIEVR
>NC_010831.1|WP_012474664.1|1351318_1351648_+|hypothetical-protein
MSNEFGMWEVLRVRWEEDLGSAEWKAEARSQNSAVGAGPCACPHERSVVSLCLLRLLRSALLVFMSLKTIYRGVQKIRIGEKNREIMYVLTYASFRDRHELFLLTVTLE
>NC_010831.1|WP_012474663.1|1349606_1350881_+|hypothetical-protein
MKPICINNYCFDHIHLWIQYHYAVPQFVELAVEVFYPRDQQANGLVMFNHGFLIGTDLLYYPKKIIGSLLNDNPLFGVHPSYYYNYSSALVEKNWAMAFVTATHTQNQAIPWTDFGGNPRVGQEAYAAASYLIKYGVTDEFYKAEKKYERTAIYNPEEVEKSRFMRSNNVIFAGHSVGGAHAQVAATGFDTIRKLGDKSWRFFDPVMYDREFLPKYSERMSDWAPEERADPVGLVQLSPVDQKVPLLGPGLAEYRTAMSKKPLPILMMIGECDSACLKDSTPPAWSADPKETTEFSQLAPEGSESWAVVANVEKGSHCGYLTQDDELCDMADKDSGLCEKGTKTWKSGEEESVFATELFKQFIGMYPDAKGFQGDFKKWIHSDFIKWLNRENPYGKLKLKPFADGKYIQYVSHGGCPPLEARKG
>NC_010831.1|WP_012474662.1|1349294_1349558_+|Nif11-like-leader-peptide-family-natural-product-precursor
MSVASAKEFLEKITSDDAFRHDLISALAKFRTELVTQAGFEFNEQELDEAKSQLSSGTLGQVPGWFCDIEESGKPYKGRKCGGGVWH
>NC_010831.1|WP_012474661.1|1348178_1349042_+|glycosyltransferase-family-2-protein
MKRRGEPLVTVTIPMYNNERFISQTIESILSQTYTDFELLVYDDNSTDASYEIAKSFVDPRMRVVRNDKNLGPEGNWNKAIEEVRGKYVKLICGDDILYPKCLERQVAVFEKKQHAGISLVCSQRTIIDPEGKPLIKKINLVDKGRHKASEVTRKLIRMGTNILGEPVCGLYPAALLPYTRGYTAKVPYTIDLEFWTQLLRLGDLYMIDEPLCAFRISDESWSSRIGDMRYHHFIEFMEQTASEKSFEITDLDMFIGKINCAVHSMTSTVGFKLFAGAAQEEGGGGI
>NC_010831.1|WP_012474660.1|1346824_1348063_+|pentapeptide-repeat-containing-protein
MNSFLRAACLIVLAGVFLPSISAAYDSGSLTLIRKSVTSWNSMRENYPEAAIDLSGADLKGRNLKGADLHNANLQGANLHGADLSDTDLRGASFDHASLKGALLFDADLREATVREADLEDAAFEGADLRGAVLDGAVMKQADLGESNLRNASLRGTDLRAANLKMADLAGCDLSGAYLWRAVLDGANLENSVVTSVTIVETGRSADPEWAQKNGAVLAMSEPARQKEGAAEAESENTVTESILAQKTWPINPVVQKIRFGVERKDAATLSYDVHQRELLIKSVSKWNRMRETNPDAPVRLSGAKLSRKVLDGADLRDADLAGSLMKRTGLADTDLRNADLREANLREAELTNADLRGADLRGAYLWRANLSWTKIAGIRVNSHTVFDDGKNVTPAWAKKRGAVFMDRDMEE
>NC_010831.1|WP_041471560.1|1345556_1346828_+|hypothetical-protein
MEPGAIVRIYLSVSVFIITAAAFLGAAGAWTGSLFLDTVHPYVFFTGFGNLAIIILNRYLISAIYPELEIDPEKQIRAIYGVLLSVLLVFVAVAMEWPLLKAAVGLFLIIIVLSAAREIFSTLSIGKIWQEVSVRYYIFDVLFLLVANLGLFTLGLKETFPESGVIPFFVTQSTYFLGSSFPLSISVMGFLYAYVWRRSSGKEWIRKLFSIWFYIFVGGVLVFLVAILMGNYLGMMLVSHTLMLGVLALLVGFARYLYGFFARQFHHPALAFLLSGLAMLLAASAFGILNIFYFDHFGARPPIPPDRMWIYHSHTHAALLGWISLSFTGMIYIVVPAIAKANSLELLRSEKALSQLLDEKTLSRAFRQLTIAVVSATAILLAFYLHNDVLLAVGGVVYGLAVFYSRGNLAKASKSENRKKGNL
>NC_010831.1|WP_012474658.1|1345132_1345540_+|hypothetical-protein
MKKWFKESSPILAISRIVLAFSWIYQGAVPKVICRSPGEIQLLEYVIRNNELACAMVVWMGYGEIVFGAFLLVTRRGSVFLLNVIALSALLVYVAVFEPELLILPFNPLILNVSLIGMSLIAYIELKKNTGFAKR
>NC_010831.1|WP_012474657.1|1344226_1344982_+|PhoU-family-transcriptional-regulator
MKIFGKKTGLSGGSDARKGIEKVARPEAFTIRVDPQKFNLATKPQGPVHEQLETLRQKLTKLSSNVENNLMLVIRASTKKNSDLAQSAFDFDKEYIQKGKFEVEYLCLAYSFFQALDEGDKKVVDLAREIMRKLETIGQYALNIAVKTEFIQLANIEILHKDEYDLKPMGDITAEMIKKAVEAFVSGNSKHATETLDMMKEIDEIYEKAVIKLRGEVNDENITNYTGILSVVEHVKMSADLSCDIARMLTD
>NC_010831.1|WP_012474668.1|1354784_1355318_+|hypothetical-protein
MGQILGQMDSYFSLPFFTVFGGISSVIVIAAALYSGYLFWQGVFPVLWRLGHGLSSRKIAVFADSDKFDDLKKILIDSGLFKEKNIIKIGKESIRKADDISLRLMHWDAYKDELQEILRYKKDMHALIVYAPQNEDRIGPDDIDAINKNRNTIIVNFRGRLLNDVLTSMITTGYQKK
>NC_010831.1|WP_012474669.1|1355546_1358099_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MSDTERDSFYLGALLHDIGKFIQRAEIDEWKERADEYVKSGDASKGDYTHKRYSAAFIKKFRNKTGIFPQDAAAESYALWHHRGKDRSKFDNESINKKGVPLKLIHIADISASEERQTDAEIDSQDYNLAKLESIFCNVALRNSDEQLNSFPEKRYINLGTLTCKYESAFPLSKEPAYHEQNYTTLVNEFLAGFEKSIGKTKELQPFLVKYLHAVPAQTPFKKKDHQEPYRPDINLFDHSRVTAAIALCLYDEWIQGDWRGKDKQILDDTENGYKSSGFSAPCLLVSGDISGIQDFIFNVPSKGAAKTLKARSFFVQMLADVCVQKIQDTLDLKPANLLYNGGGQFYFLVPKCRAQDLNDCKEDIARALIDEELFLSIASVEVKVFDFMNNFGKKWKGVNDKLSIEKLRKFKGQKRKDVFGPFKQVIRENNERDPFFEITDKKFRKNDYYRILAESSGVKVPEEEEKKSWVDILGKLGYRFEFQVMGSTDAVAFNTTDFEEKCAGFRFSVKDLPHWRTVASIEQFKQDVENCGRSVEEYYDKDKDGKRWGLKPDNIITYSQLAFKAYKETGTHKLGILKMDVDNLGQIFSDGFPEEIRTPSRMMSLSRSLQWFFEGYMNTLLEDEEFRDYLYPIFSGGDDLFIVGAWHKVFDIALRIQKDFRQFVCENPSVTLSASLLVVDEHYPVSRFAVLAEERLHEAKYGSLDKNSVNVFGQTLSWVEFGRACEIKEKLVRMVLELKEPKAIIQKVLQGCKGLEVLCDRAVRHRNVSSERNLQGLSVLDREKPAGEKVWQMAWFLRDIEKEESRPIAEEIVGEYERVVFAAMKGETVNPMYIAVGARWAEFSCRKSL
>NC_010831.1|WP_153303909.1|1358116_1359249_-|IS630-like-element-ISCph1-family-transposase
MKKYKVTLTEEERQELDALSSKGKHAAQTVLNALILLACDEGKFQKERSINEDIARVLNISMKTIDRVKKRFVEEGLSMALTGKPSTRVYSRKADGDLEAHLVALSCSEPPEGHLRWTLRLLADKAVELNYVENISYETVRRTFKKNVLKPWKQVGWVIPPLHDGNFVAHMEMVLDTYKQPYDPLYPVVCMDESPKQLIAETRMPVPARPGQLARYDYEYSRKGTCNIFIANEPLVGKRMVKVTSSRKKDDWARFLAEIASKYKHAERITLVMDNLNTHQPGSLYQAFKPQEAKALLDRFEFVYTPKHGSWLNMAEIELRVLSGQCLNRRIDTITEVRSEVMAWEKERNNLNAIINWRFTTDKARIKLKHLYPSVDA
>NC_010831.1|WP_012474672.1|1359333_1359759_+|type-III-A-CRISPR-associated-protein-Csm2
MSEQNGDKSAYEREKELRSKLTDTFVLDYTPETYQAMIDTVKEYSGILVSGKYAITTTQLRNIYTSVKKAKKPKELLPLQVRLAYLAGRNESNPRFKALADTLSLLIRKVKTETQLEHFTEFFTALIAYQKYHEKFSSKKH
>NC_010831.1|WP_012474673.1|1359761_1360496_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MQKLIGKVRLSGRIKAETGLHIGGSKTALDIGGIDLNVIKTPGGVPFIPGSSLKGKLRSILAREHGSMAISKKEKGVRDGDTTDEDIPIIIELFGNAGDKKDACPSRIIVRDAFLDKEFFNDPVKNEGIFSELEMDYTESKWENTILRKTGTAINPRPVERVPVGTKFDFEIIYNVFNDDKKKLHLNEIIKALRILEDDYLGGLGSRGYGKISFPREFMQYSYKSIENYKNGDDWQELTGIETL
>NC_010831.1|WP_153303910.1|1360482_1361523_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKHYNRTDMQALLLIPVGGGQFHFGENGLEDSSDLLHSDTLFSALANIYEYALSGAEIFIDLVESGRLSFSSGMYALLKQGEMSLLFVPKPVVTYRKSDDRKLHKSLKYFSLGVLEEFRKSFESQKHESELDLSVYSSIGNEFLCLADELGGMPDEFKNRSFRRFTTSPKVKVHTTFEDNDRLYHETTVQFHTFSAAGVEYGGAYCVLFNADALTYEERQEFLAALRIMADEGVGGQRSSGKGQFREVREVTIDIPDEESASAYLGLSIVSPADDSEFNALERYELFVRGGGSLGWRGDSERHRKQARFVKEGALFTKNIAGALVDVSPEGDKTILRNGMNFSIPI
>NC_010831.1|WP_012474675.1|1361531_1362674_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTKALISHKVSLTTLSPVFIGAGAEHVLSPYSDFVQRGDSLIYIDTDRLQDAMQGDKALIEAFVKGMRHIENNRLTFVLEKFITGTLGREVDDFAARVVRIDGDIQKNHIRRFIATGGKPFIPGSSLKGAIRTAVLVDWLLNRKAGEPIFNQIRENINKRDRRSLKDMNLEQACFGTISRDVFRNLRISDSSVIESSSLWVGEMRRVALPTEKKKKQQQSSIPQWSEVIGPSVETTFPLSLTTPIEKTGFDFLDHQSVTKLFPIINRISLDSCLRELGELKGNQDFRDFFRFYEKLEQEITSLKTDEAILRLGGGKTWFDNSLGLSIDCEEFRPEALLKKYLDLVLDFKHDPFPSTRSAIVRNGVPVYPLGWVKLTLLKN
>NC_010831.1|WP_012474676.1|1362680_1363679_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MYTPLFSLPIARFRFTIEPTEEIRLPEYKGSAFRGGFGHAFKRATCITRDRYCEPCILKSSCTYFKVFESKVSRETAERLRLGGDAPHPFIIEPPLNRQGYFEPGDRLSFSLVLIGTAIGQLPFFVYAFMILGESFGIGRGRGRFRLLEVEDENGKQLYDEGNLAGGFVIRSAGEIMGQENATEDREITLSFKTPLRMKTSLGRERKELLTRMDDHASVRVLLKSLYHRAFVLNQLYGEGVAEDAYESRNLPLIDGDVDIVRSDTFWHDWTRYSQRQQRHMKLGGLMGDVTLGGKTAQYEPLFRLGEYLHVGKGTGFGLGKYRIEGRSGGAL
>NC_010831.1|WP_012474389.1|1364862_1366269_-|IS1380-like-element-ISCph7-family-transposase
MQLPFANIHTEQPTQQALFPDCFEVSVAPVKGKKVVLDFQGGNTTSDAGVLLLKEVESMTRIVPKLADCIADSRRTSSVMHVIHDLIAQRVYQIACGYEDGNDSNSLRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSYTEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLHVFEGLTGKLIASILRPGRRPTGKEIVSYVKRIIRHIRSRWPETIIVYRGDSHYGVPEVYSFLASKRNCYSVTGLGGNDVLLRSVKDIIEEVKKHGAGYRRYHTFQYQARSWNGSRRVVAKVEMTEKGLNVRFISTDIQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYVLVHAFQTNLLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKCLTILEHLRSVPWPSTAIP
>NC_010831.1|WP_012474677.1|1367017_1367230_+|addiction-module-protein
MNKILLDKAMEMPPSERVAFAELLLASIDYEEEEIRQAWIKEVKERISAVNKGEAKLLDFEALYHEDQDS

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Crispr_ID: NC_010831_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010831_2

1363799-1364369

TypeIII

Consensus_repeat	Method
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	PILER-CR
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	CRISPRCasFinder
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	CRT

7 spacers

cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

The CRISPR arrays of NC_010831_2

>merge|NC_010831|2|1363799-1364369|PILER-CR,CRISPRCasFinder,CRT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGACAAGCCCATTTCTGCTATTGCGCAACAAATTACTCGTAGGGTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGACCTGGACTTTCCGGGATTTTTTTCAGCACAGCAAGATGATTGTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGACAGTTTGAATCCGCCTTCGTCGCCTATTGTTTCGATATATGTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGACAGTTTGAATCCGCCTTCGTCGCCTATTGTTTCGATATATGTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGACTCCGAGGAAAAGAGAGGTATCGCCTGTTTCGTTTGGCGTGTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGACCGAACGCGAAGATGAATACTATGCCTCCAGTGGCTTGATGTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGACGCACATGCCAGGCGCAGAACATCCGTCGGTGTGTCAATCAGTAGATGAAGACCCGCTTGGATAAAGGGGTTGGTGAA

>NC_010831|2|2|1363799-1364292|PILER-CR
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	AAGCCCATTTCTGCTATTGCGCAACAAATTACTCGTAGG
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	CTGGACTTTCCGGGATTTTTTTCAGCACAGCAAGATGATT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	AGTTTGAATCCGCCTTCGTCGCCTATTGTTTCGATATAT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	AGTTTGAATCCGCCTTCGTCGCCTATTGTTTCGATATAT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	TCCGAGGAAAAGAGAGGTATCGCCTGTTTCGTTTGGCGT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	CGAACGCGAAGATGAATACTATGCCTCCAGTGGCTTGAT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC

>NC_010831|2|2|1363799-1364369|CRISPRCasFinder
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	AAGCCCATTTCTGCTATTGCGCAACAAATTACTCGTAGG
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	CTGGACTTTCCGGGATTTTTTTCAGCACAGCAAGATGATT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	AGTTTGAATCCGCCTTCGTCGCCTATTGTTTCGATATAT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	AGTTTGAATCCGCCTTCGTCGCCTATTGTTTCGATATAT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	TCCGAGGAAAAGAGAGGTATCGCCTGTTTCGTTTGGCGT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	CGAACGCGAAGATGAATACTATGCCTCCAGTGGCTTGAT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	GCACATGCCAGGCGCAGAACATCCGTCGGTGTGTCAATCA
GTAGATGAAGACCCGCTTGGATAAAGGGGTTGGTGAA

>NC_010831|2|2|1363799-1364369|CRT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	AAGCCCATTTCTGCTATTGCGCAACAAATTACTCGTAGG
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	CTGGACTTTCCGGGATTTTTTTCAGCACAGCAAGATGATT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	AGTTTGAATCCGCCTTCGTCGCCTATTGTTTCGATATAT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	AGTTTGAATCCGCCTTCGTCGCCTATTGTTTCGATATAT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	TCCGAGGAAAAGAGAGGTATCGCCTGTTTCGTTTGGCGT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	CGAACGCGAAGATGAATACTATGCCTCCAGTGGCTTGAT
GTAGATGAAGACCCGCTTGGATAAAGGGGATTGAGAC	GCACATGCCAGGCGCAGAACATCCGTCGGTGTGTCAATCA
GTAGATGAAGACCCGCTTGGATAAAGGGGTTGGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010831.1\|WP_012474683.1\|1373488_1373749_+\|selenobiotic-family-radical-SAM-modification-target-peptide	unknown	unknown	gnl\|CDD\|188596
NC_010831.1\|WP_041471565.1\|1377084_1377618_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012474685.1\|1375831_1377046_+\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|236316
NC_010831.1\|WP_012474684.1\|1373834_1375550_+\|selenobiotic-family-peptide-radical-SAM-maturase	unknown	unknown	gnl\|CDD\|274965
NC_010831.1\|WP_012474677.1\|1367017_1367230_+\|addiction-module-protein	unknown	unknown	gnl\|CDD\|378247
NC_010831.1\|WP_153303910.1\|1360482_1361523_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|224483
NC_010831.1\|WP_012474675.1\|1361531_1362674_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NC_010831.1\|WP_012474668.1\|1354784_1355318_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012474389.1\|1364862_1366269_-\|IS1380-like-element-ISCph7-family-transposase	unknown	unknown	gnl\|CDD\|379340
NC_010831.1\|WP_012474669.1\|1355546_1358099_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_010831.1\|WP_012474666.1\|1352498_1353254_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373102
NC_010831.1\|WP_153303911.1\|1368759_1368957_-\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012474678.1\|1367210_1367507_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	unknown
NC_010831.1\|WP_012474665.1\|1351657_1352539_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NC_010831.1\|WP_012474672.1\|1359333_1359759_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NC_010831.1\|WP_012474680.1\|1368468_1368747_-\|toxin	unknown	unknown	gnl\|CDD\|367913
NC_010831.1\|WP_012474676.1\|1362680_1363679_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NC_010831.1\|WP_012474679.1\|1368169_1368472_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227620
NC_010831.1\|WP_153303909.1\|1358116_1359249_-\|IS630-like-element-ISCph1-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_010831.1\|WP_012474673.1\|1359761_1360496_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274212

Protein	Function_ID	Function_description	E-value
NC_010831.1\|WP_012474683.1\|1373488_1373749_+\|selenobiotic-family-radical-SAM-modification-target-peptide	gnl\|CDD\|188596	TIGR04081, hypothetical_protein_Dthio_PD0538, radical SAM modification target peptide, selenobiotic family. Members of this protein family are small peptides found in the vicinity of a peptide modification-type radical SAM protein family. Multiple members of this protein family occur in species with a selenocysteine incorporation systems and have a TGA stop codon at position that aligns with cysteine residues from other homologs. This finding strongly suggests that GSU_1558 and similar members of the family are selenopeptides. The selenocysteine insertion sequence (SECIS) finder bSECISearch finds two homologous SECIS elements for two TGA codons in the extension of GSU_1558. Meanwhile, the pairing with the radical SAM enzyme suggests additional modification.	0.00113325
NC_010831.1\|WP_012474685.1\|1375831_1377046_+\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|236316	PRK08636, PRK08636, LL-diaminopimelate aminotransferase.	0
NC_010831.1\|WP_012474684.1\|1373834_1375550_+\|selenobiotic-family-peptide-radical-SAM-maturase	gnl\|CDD\|274965	TIGR04082, Radical_SAM_domain_protein, selenobiotic family peptide radical SAM maturase. Members of this protein family are radical SAM (rSAM) enzymes similar in sequence to others with known or postulated roles in peptide modification, and regularly found adjacent to members of the GSU_1558 peptide family described by model TIGR04081. GSU_1558 and several other members of that family appear to be selenoproteins, hence the term selenobiotic.	0
NC_010831.1\|WP_012474677.1\|1367017_1367230_+\|addiction-module-protein	gnl\|CDD\|378247	pfam09720, Unstab_antitox, Putative addiction module component. This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death - although these gene-pairs are usually found on the bacterial main chromosome.	3.52175e-07
NC_010831.1\|WP_153303910.1\|1360482_1361523_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|224483	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.0612e-22
NC_010831.1\|WP_012474675.1\|1361531_1362674_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	4.69561e-29
NC_010831.1\|WP_012474389.1\|1364862_1366269_-\|IS1380-like-element-ISCph7-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	0
NC_010831.1\|WP_012474669.1\|1355546_1358099_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	3.90583e-129
NC_010831.1\|WP_012474666.1\|1352498_1353254_+\|hypothetical-protein	gnl\|CDD\|373102	pfam14511, RE_EcoO109I, Type II restriction endonuclease EcoO109I. This is a family of Type II restriction endonucleases.	7.71166e-117
NC_010831.1\|WP_012474665.1\|1351657_1352539_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	1.33559e-43
NC_010831.1\|WP_012474672.1\|1359333_1359759_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.32039e-09
NC_010831.1\|WP_012474680.1\|1368468_1368747_-\|toxin	gnl\|CDD\|367913	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system. BrnT is a ribonuclease toxin of a type II toxin-antitoxin system that exhibits a RelE-like fold. The antitoxin that neutralizes this toxin is pfam14384. BrnT is found in bacteria, archaea, bacteriophage, and plasmids. BrnT-BrnA forms a 2:2 tetrameric complex and autoregulates its own expression, which is induced by a number of different environmental stresses. Expression of BrnT alone results in cessation of bacterial growth which can be rescued after subsequent expression of BrnA.	0.00183382
NC_010831.1\|WP_012474676.1\|1362680_1363679_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	1.34464e-08
NC_010831.1\|WP_012474679.1\|1368169_1368472_-\|hypothetical-protein	gnl\|CDD\|227620	COG5304, COG5304, Uncharacterized protein conserved in bacteria [Function unknown].	4.17373e-09
NC_010831.1\|WP_153303909.1\|1358116_1359249_-\|IS630-like-element-ISCph1-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.50738e-28
NC_010831.1\|WP_012474673.1\|1359761_1360496_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|274212	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3. Members of this CRISPR-associated (cas) gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm3, for CRISPR/cas Subtype Mtube, protein 3.	8.80357e-64

>NC_010831.1|WP_012474676.1|1362680_1363679_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MYTPLFSLPIARFRFTIEPTEEIRLPEYKGSAFRGGFGHAFKRATCITRDRYCEPCILKSSCTYFKVFESKVSRETAERLRLGGDAPHPFIIEPPLNRQGYFEPGDRLSFSLVLIGTAIGQLPFFVYAFMILGESFGIGRGRGRFRLLEVEDENGKQLYDEGNLAGGFVIRSAGEIMGQENATEDREITLSFKTPLRMKTSLGRERKELLTRMDDHASVRVLLKSLYHRAFVLNQLYGEGVAEDAYESRNLPLIDGDVDIVRSDTFWHDWTRYSQRQQRHMKLGGLMGDVTLGGKTAQYEPLFRLGEYLHVGKGTGFGLGKYRIEGRSGGAL
>NC_010831.1|WP_012474675.1|1361531_1362674_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTKALISHKVSLTTLSPVFIGAGAEHVLSPYSDFVQRGDSLIYIDTDRLQDAMQGDKALIEAFVKGMRHIENNRLTFVLEKFITGTLGREVDDFAARVVRIDGDIQKNHIRRFIATGGKPFIPGSSLKGAIRTAVLVDWLLNRKAGEPIFNQIRENINKRDRRSLKDMNLEQACFGTISRDVFRNLRISDSSVIESSSLWVGEMRRVALPTEKKKKQQQSSIPQWSEVIGPSVETTFPLSLTTPIEKTGFDFLDHQSVTKLFPIINRISLDSCLRELGELKGNQDFRDFFRFYEKLEQEITSLKTDEAILRLGGGKTWFDNSLGLSIDCEEFRPEALLKKYLDLVLDFKHDPFPSTRSAIVRNGVPVYPLGWVKLTLLKN
>NC_010831.1|WP_153303910.1|1360482_1361523_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKHYNRTDMQALLLIPVGGGQFHFGENGLEDSSDLLHSDTLFSALANIYEYALSGAEIFIDLVESGRLSFSSGMYALLKQGEMSLLFVPKPVVTYRKSDDRKLHKSLKYFSLGVLEEFRKSFESQKHESELDLSVYSSIGNEFLCLADELGGMPDEFKNRSFRRFTTSPKVKVHTTFEDNDRLYHETTVQFHTFSAAGVEYGGAYCVLFNADALTYEERQEFLAALRIMADEGVGGQRSSGKGQFREVREVTIDIPDEESASAYLGLSIVSPADDSEFNALERYELFVRGGGSLGWRGDSERHRKQARFVKEGALFTKNIAGALVDVSPEGDKTILRNGMNFSIPI
>NC_010831.1|WP_012474673.1|1359761_1360496_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MQKLIGKVRLSGRIKAETGLHIGGSKTALDIGGIDLNVIKTPGGVPFIPGSSLKGKLRSILAREHGSMAISKKEKGVRDGDTTDEDIPIIIELFGNAGDKKDACPSRIIVRDAFLDKEFFNDPVKNEGIFSELEMDYTESKWENTILRKTGTAINPRPVERVPVGTKFDFEIIYNVFNDDKKKLHLNEIIKALRILEDDYLGGLGSRGYGKISFPREFMQYSYKSIENYKNGDDWQELTGIETL
>NC_010831.1|WP_012474672.1|1359333_1359759_+|type-III-A-CRISPR-associated-protein-Csm2
MSEQNGDKSAYEREKELRSKLTDTFVLDYTPETYQAMIDTVKEYSGILVSGKYAITTTQLRNIYTSVKKAKKPKELLPLQVRLAYLAGRNESNPRFKALADTLSLLIRKVKTETQLEHFTEFFTALIAYQKYHEKFSSKKH
>NC_010831.1|WP_153303909.1|1358116_1359249_-|IS630-like-element-ISCph1-family-transposase
MKKYKVTLTEEERQELDALSSKGKHAAQTVLNALILLACDEGKFQKERSINEDIARVLNISMKTIDRVKKRFVEEGLSMALTGKPSTRVYSRKADGDLEAHLVALSCSEPPEGHLRWTLRLLADKAVELNYVENISYETVRRTFKKNVLKPWKQVGWVIPPLHDGNFVAHMEMVLDTYKQPYDPLYPVVCMDESPKQLIAETRMPVPARPGQLARYDYEYSRKGTCNIFIANEPLVGKRMVKVTSSRKKDDWARFLAEIASKYKHAERITLVMDNLNTHQPGSLYQAFKPQEAKALLDRFEFVYTPKHGSWLNMAEIELRVLSGQCLNRRIDTITEVRSEVMAWEKERNNLNAIINWRFTTDKARIKLKHLYPSVDA
>NC_010831.1|WP_012474669.1|1355546_1358099_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MSDTERDSFYLGALLHDIGKFIQRAEIDEWKERADEYVKSGDASKGDYTHKRYSAAFIKKFRNKTGIFPQDAAAESYALWHHRGKDRSKFDNESINKKGVPLKLIHIADISASEERQTDAEIDSQDYNLAKLESIFCNVALRNSDEQLNSFPEKRYINLGTLTCKYESAFPLSKEPAYHEQNYTTLVNEFLAGFEKSIGKTKELQPFLVKYLHAVPAQTPFKKKDHQEPYRPDINLFDHSRVTAAIALCLYDEWIQGDWRGKDKQILDDTENGYKSSGFSAPCLLVSGDISGIQDFIFNVPSKGAAKTLKARSFFVQMLADVCVQKIQDTLDLKPANLLYNGGGQFYFLVPKCRAQDLNDCKEDIARALIDEELFLSIASVEVKVFDFMNNFGKKWKGVNDKLSIEKLRKFKGQKRKDVFGPFKQVIRENNERDPFFEITDKKFRKNDYYRILAESSGVKVPEEEEKKSWVDILGKLGYRFEFQVMGSTDAVAFNTTDFEEKCAGFRFSVKDLPHWRTVASIEQFKQDVENCGRSVEEYYDKDKDGKRWGLKPDNIITYSQLAFKAYKETGTHKLGILKMDVDNLGQIFSDGFPEEIRTPSRMMSLSRSLQWFFEGYMNTLLEDEEFRDYLYPIFSGGDDLFIVGAWHKVFDIALRIQKDFRQFVCENPSVTLSASLLVVDEHYPVSRFAVLAEERLHEAKYGSLDKNSVNVFGQTLSWVEFGRACEIKEKLVRMVLELKEPKAIIQKVLQGCKGLEVLCDRAVRHRNVSSERNLQGLSVLDREKPAGEKVWQMAWFLRDIEKEESRPIAEEIVGEYERVVFAAMKGETVNPMYIAVGARWAEFSCRKSL
>NC_010831.1|WP_012474668.1|1354784_1355318_+|hypothetical-protein
MGQILGQMDSYFSLPFFTVFGGISSVIVIAAALYSGYLFWQGVFPVLWRLGHGLSSRKIAVFADSDKFDDLKKILIDSGLFKEKNIIKIGKESIRKADDISLRLMHWDAYKDELQEILRYKKDMHALIVYAPQNEDRIGPDDIDAINKNRNTIIVNFRGRLLNDVLTSMITTGYQKK
>NC_010831.1|WP_012474666.1|1352498_1353254_+|hypothetical-protein
MKPILSSDVSKYVEDNIGTFHQKRISNLDRLKLNKVLERKNPYLFRAKHLLTAEEIVKGLVDAHISSNEETIFGDWLEGLAIFINGKVYGGRKSGIPGIDLEFDKGSVRYIVNIKSGPNWGNSSQIAKMKSDFRTAAKTLRTSNSGINVTAVNGCCYGKTRTSDKGDYYKYCGQEFWEFISGDSDLFVEIIEPLGHKAREKNAEFQQSYSQMINKFTMQFGAGYCDDNGSINWIKLLKHNSASSHAKDSDA
>NC_010831.1|WP_012474665.1|1351657_1352539_+|site-specific-DNA-methyltransferase
MEIRTDLYLGDSQEELKKIPDNSVDLIVTSPPYADQRKKTYGGIHPDHYVSWFLPIAEQLMRVLKPTGTFVLNIKEKVVNGERSTYVMELILEMRRQQGWLWTEEFIWHKKNCYPGKWPNRFRDSWERLIQFNKSKQFYMNQEAVMVPMGEWSKTRLKNLSETDKVRDESKVGSGFGKNISNWLDRKKAYPTNVLHLATECNNKKHSAAFPEGLPEWFIRLFTKEGDTVLDPFMGSGTTNIVASRMKRHSIGVDILPEYYSMVCDELKPQELYLLEQTKQYETDTIKRRIEVR
>NC_010831.1|WP_012474389.1|1364862_1366269_-|IS1380-like-element-ISCph7-family-transposase
MQLPFANIHTEQPTQQALFPDCFEVSVAPVKGKKVVLDFQGGNTTSDAGVLLLKEVESMTRIVPKLADCIADSRRTSSVMHVIHDLIAQRVYQIACGYEDGNDSNSLRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSYTEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLHVFEGLTGKLIASILRPGRRPTGKEIVSYVKRIIRHIRSRWPETIIVYRGDSHYGVPEVYSFLASKRNCYSVTGLGGNDVLLRSVKDIIEEVKKHGAGYRRYHTFQYQARSWNGSRRVVAKVEMTEKGLNVRFISTDIQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYVLVHAFQTNLLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKCLTILEHLRSVPWPSTAIP
>NC_010831.1|WP_012474677.1|1367017_1367230_+|addiction-module-protein
MNKILLDKAMEMPPSERVAFAELLLASIDYEEEEIRQAWIKEVKERISAVNKGEAKLLDFEALYHEDQDS
>NC_010831.1|WP_012474678.1|1367210_1367507_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIRIHEAAARELDEAIKWYELQSQGLGKRFKTSVAAQIRKIRKNPNWFLIESGEIYKVYIPKFPYKIIYTSGKDSIVIWAIAHMHRKPRFWQSRTKN
>NC_010831.1|WP_012474679.1|1368169_1368472_-|hypothetical-protein
MTTNKLDKEEQEMLKAYEAGEFTSTITPERKQFLEESAKQALKRDKKISIRISGRDLTAIQVKALQEGIPYQTLAASIIHKYVSGDLYDESANRNVNPEN
>NC_010831.1|WP_012474680.1|1368468_1368747_-|toxin
MKTINWNPEKNRKLITERKISFKEILFSMQSRGLLDDISHPGKEQYAHQRIFVIAVDEYAYLVPYVENEQEIFLKTIVPSRKATRQYLGDKK
>NC_010831.1|WP_153303911.1|1368759_1368957_-|hypothetical-protein
MKSKHLFHGVIRHPCPPESHAGLDPASMQIPASTMDSRVKHGNDRKGNVSRPCALFFLPLANYSG
>NC_010831.1|WP_012474683.1|1373488_1373749_+|selenobiotic-family-radical-SAM-modification-target-peptide
MDKSGMKKVLAGLSIAGLVTSVTLTGCQKANGSCGAGSCSKTEKVEGGDASKGTGSCSGMEDSASHGTGSCSGMKDDGAAGEGAKE
>NC_010831.1|WP_012474684.1|1373834_1375550_+|selenobiotic-family-peptide-radical-SAM-maturase
MTTTLEKIFPRTLGYLDDAQSMHVLGKSPDAFADAIRSDVSFFPKAAFLADLADVEFACWNVERMHQEFNRPSRGAVINPRLQIVPVTYDISICFNDSATGISGNIEPDEGWILVWKGPETGTLYVEKADEQMLLALKVLSEEEHVSRGDQLNVINQAIDYAARKGIVLKAPYLVSRSLQGFPMGNNIPERYFTASVFTLQWHITNACDLHCRHCYDRERRSPLTAEQGLAIIDDFDRFCQEKNVRGHVCFSGGNPFMSPHFFLLYRSAVDKGMATSLLGNPVSAEELQRVIDIRMPDYFQVSLEGLEEHNDYIRGEGYFSRVMAFLDLLREKQVSSAVMLTLTQANIDQILPLADILRGKTDYFTFNRLSQVGEGALLSLPDSHAYRRFLKEYTAAAADNPVIGLKDNLINILRERKGVTPFGGCTGFGCGAAFNFVALLPDGEVHACRKFPSLIGNILENSFLTIYESLEAQRYRMGPDECKECRLRPVCGGCMAVVHGMGLDPFTEKDPFCFIEVEKSKGKSEKSKGKSEKGEGERGKRKSKGRRQKLKGNRGKGKGGREKGEEKVKS
>NC_010831.1|WP_012474685.1|1375831_1377046_+|LL-diaminopimelate-aminotransferase
MFDEIEFEKIKRLPKYVFAAVDELKMAERRAGEDVIDFSMGNPDGPTPQHIIDKLVESVQKPRTHGYSVSKGIYKLRQAICGWYLRRFGVELDPDTEVVASMGSKEGYVNLVQAIINPGDVAMVPDPCYPIHSQAFILAGGNVHRFKLVFRDDFTLDEDAFFRNIEKAIRESSPKPKYLVVNFPNNPTTVTVELSFYEKLVALARKERFYIISDIAYAEITFDGYRAPSILQVPGAKDVAIESYTLSKTYNMAGWRVGFLAGNPKLVGALMRIKSWLDYGMFTPIQVASTIALNESQECVGEIRDTYQRRRDVLVKSFANAGWEMQQPKASMFVWARIPEPFRERGSLEFSKMLLKEAKIAVSPGIGFGTYGDEYVRIALIENEERIRQAARNVRKFLRSHGCG
>NC_010831.1|WP_041471565.1|1377084_1377618_+|hypothetical-protein
MENDTSGQLLADLFDEYSEWYMGLAAEYGSLPRSLSGLSKEGRQFIYLLDDLELHHMMRNKYLRYILDELESVVYAYGGIDLRGDSDAAEVAEVLSVSAADSENYITGDWRVVRDEDGKVADLAHLGTRQGNDPEEHPGTWFMAGSVSFSALEKSRFGALWDEAKPGVIFRDRNGEG

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Crispr_ID: NC_010831_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010831_3

1368894-1369002

TypeIII

Consensus_repeat	Method
CGGCATGACTTTCCGGAGGGCATGGATGCCGGATCACCCCG	CRISPRCasFinder

1 spacers

cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11

The CRISPR arrays of NC_010831_3

>merge|NC_010831|3|1368894-1369002|CRISPRCasFinder
CGGCATGACTTTCCGGAGGGCATGGATGCCGGATCACCCCGTGAAATAGATGTTTTGATTTCACAGGGCGGCATGACTTTCCGGAGGGCATGGATGCCGGATCACCCCG

>NC_010831|3|3|1368894-1369002|CRISPRCasFinder
CGGCATGACTTTCCGGAGGGCATGGATGCCGGATCACCCCG	TGAAATAGATGTTTTGATTTCACAGGG
CGGCATGACTTTCCGGAGGGCATGGATGCCGGATCACCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010831.1\|WP_012474690.1\|1380443_1382036_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	unknown	unknown	gnl\|CDD\|238576
NC_010831.1\|WP_012474684.1\|1373834_1375550_+\|selenobiotic-family-peptide-radical-SAM-maturase	unknown	unknown	gnl\|CDD\|274965
NC_010831.1\|WP_041471565.1\|1377084_1377618_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012474689.1\|1380043_1380229_+\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572
NC_010831.1\|WP_012474685.1\|1375831_1377046_+\|LL-diaminopimelate-aminotransferase	unknown	unknown	gnl\|CDD\|236316
NC_010831.1\|WP_012474692.1\|1384399_1387489_-\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237255
NC_010831.1\|WP_012474691.1\|1382042_1384328_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NC_010831.1\|WP_012474677.1\|1367017_1367230_+\|addiction-module-protein	unknown	unknown	gnl\|CDD\|378247
NC_010831.1\|WP_153303910.1\|1360482_1361523_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|224483
NC_010831.1\|WP_012474675.1\|1361531_1362674_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|187793
NC_010831.1\|WP_012474389.1\|1364862_1366269_-\|IS1380-like-element-ISCph7-family-transposase	unknown	unknown	gnl\|CDD\|379340
NC_010831.1\|WP_012474683.1\|1373488_1373749_+\|selenobiotic-family-radical-SAM-modification-target-peptide	unknown	unknown	gnl\|CDD\|188596
NC_010831.1\|WP_012474693.1\|1387852_1388914_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
NC_010831.1\|WP_012474678.1\|1367210_1367507_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	unknown
NC_010831.1\|WP_081433117.1\|1378004_1379348_-\|phosphatidylserine-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|378885
NC_010831.1\|WP_012474672.1\|1359333_1359759_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NC_010831.1\|WP_012474680.1\|1368468_1368747_-\|toxin	unknown	unknown	gnl\|CDD\|367913
NC_010831.1\|WP_012474676.1\|1362680_1363679_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NC_010831.1\|WP_012474679.1\|1368169_1368472_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227620
NC_010831.1\|WP_012474673.1\|1359761_1360496_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274212

Protein	Function_ID	Function_description	E-value
NC_010831.1\|WP_012474690.1\|1380443_1382036_-\|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	3.12648e-72
NC_010831.1\|WP_012474684.1\|1373834_1375550_+\|selenobiotic-family-peptide-radical-SAM-maturase	gnl\|CDD\|274965	TIGR04082, Radical_SAM_domain_protein, selenobiotic family peptide radical SAM maturase. Members of this protein family are radical SAM (rSAM) enzymes similar in sequence to others with known or postulated roles in peptide modification, and regularly found adjacent to members of the GSU_1558 peptide family described by model TIGR04081. GSU_1558 and several other members of that family appear to be selenoproteins, hence the term selenobiotic.	0
NC_010831.1\|WP_012474689.1\|1380043_1380229_+\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	4.20802e-08
NC_010831.1\|WP_012474685.1\|1375831_1377046_+\|LL-diaminopimelate-aminotransferase	gnl\|CDD\|236316	PRK08636, PRK08636, LL-diaminopimelate aminotransferase.	0
NC_010831.1\|WP_012474692.1\|1384399_1387489_-\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237255	PRK12900, secA, preprotein translocase subunit SecA; Reviewed.	0
NC_010831.1\|WP_012474691.1\|1382042_1384328_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NC_010831.1\|WP_012474677.1\|1367017_1367230_+\|addiction-module-protein	gnl\|CDD\|378247	pfam09720, Unstab_antitox, Putative addiction module component. This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death - although these gene-pairs are usually found on the bacterial main chromosome.	3.52175e-07
NC_010831.1\|WP_153303910.1\|1360482_1361523_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|224483	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	1.0612e-22
NC_010831.1\|WP_012474675.1\|1361531_1362674_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|187793	cd09662, Csm5_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	4.69561e-29
NC_010831.1\|WP_012474389.1\|1364862_1366269_-\|IS1380-like-element-ISCph7-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	0
NC_010831.1\|WP_012474683.1\|1373488_1373749_+\|selenobiotic-family-radical-SAM-modification-target-peptide	gnl\|CDD\|188596	TIGR04081, hypothetical_protein_Dthio_PD0538, radical SAM modification target peptide, selenobiotic family. Members of this protein family are small peptides found in the vicinity of a peptide modification-type radical SAM protein family. Multiple members of this protein family occur in species with a selenocysteine incorporation systems and have a TGA stop codon at position that aligns with cysteine residues from other homologs. This finding strongly suggests that GSU_1558 and similar members of the family are selenopeptides. The selenocysteine insertion sequence (SECIS) finder bSECISearch finds two homologous SECIS elements for two TGA codons in the extension of GSU_1558. Meanwhile, the pairing with the radical SAM enzyme suggests additional modification.	0.00113325
NC_010831.1\|WP_012474693.1\|1387852_1388914_+\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	5.83088e-50
NC_010831.1\|WP_081433117.1\|1378004_1379348_-\|phosphatidylserine-decarboxylase-family-protein	gnl\|CDD\|378885	pfam12588, PSDC, Phophatidylserine decarboxylase. This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with pfam02666. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.	5.88883e-77
NC_010831.1\|WP_012474672.1\|1359333_1359759_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.32039e-09
NC_010831.1\|WP_012474680.1\|1368468_1368747_-\|toxin	gnl\|CDD\|367913	pfam04365, BrnT_toxin, Ribonuclease toxin, BrnT, of type II toxin-antitoxin system. BrnT is a ribonuclease toxin of a type II toxin-antitoxin system that exhibits a RelE-like fold. The antitoxin that neutralizes this toxin is pfam14384. BrnT is found in bacteria, archaea, bacteriophage, and plasmids. BrnT-BrnA forms a 2:2 tetrameric complex and autoregulates its own expression, which is induced by a number of different environmental stresses. Expression of BrnT alone results in cessation of bacterial growth which can be rescued after subsequent expression of BrnA.	0.00183382
NC_010831.1\|WP_012474676.1\|1362680_1363679_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	1.34464e-08
NC_010831.1\|WP_012474679.1\|1368169_1368472_-\|hypothetical-protein	gnl\|CDD\|227620	COG5304, COG5304, Uncharacterized protein conserved in bacteria [Function unknown].	4.17373e-09
NC_010831.1\|WP_012474673.1\|1359761_1360496_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|274212	TIGR02582, CRISPR_type_III-associated_RAMP_protein_Csm3, CRISPR type III-A/MTUBE-associated RAMP protein Csm3. Members of this CRISPR-associated (cas) gene family are found in the mtube subtype of CRISPR/cas locus and designated Csm3, for CRISPR/cas Subtype Mtube, protein 3.	8.80357e-64

>NC_010831.1|WP_012474680.1|1368468_1368747_-|toxin
MKTINWNPEKNRKLITERKISFKEILFSMQSRGLLDDISHPGKEQYAHQRIFVIAVDEYAYLVPYVENEQEIFLKTIVPSRKATRQYLGDKK
>NC_010831.1|WP_012474679.1|1368169_1368472_-|hypothetical-protein
MTTNKLDKEEQEMLKAYEAGEFTSTITPERKQFLEESAKQALKRDKKISIRISGRDLTAIQVKALQEGIPYQTLAASIIHKYVSGDLYDESANRNVNPEN
>NC_010831.1|WP_012474678.1|1367210_1367507_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIRIHEAAARELDEAIKWYELQSQGLGKRFKTSVAAQIRKIRKNPNWFLIESGEIYKVYIPKFPYKIIYTSGKDSIVIWAIAHMHRKPRFWQSRTKN
>NC_010831.1|WP_012474677.1|1367017_1367230_+|addiction-module-protein
MNKILLDKAMEMPPSERVAFAELLLASIDYEEEEIRQAWIKEVKERISAVNKGEAKLLDFEALYHEDQDS
>NC_010831.1|WP_012474389.1|1364862_1366269_-|IS1380-like-element-ISCph7-family-transposase
MQLPFANIHTEQPTQQALFPDCFEVSVAPVKGKKVVLDFQGGNTTSDAGVLLLKEVESMTRIVPKLADCIADSRRTSSVMHVIHDLIAQRVYQIACGYEDGNDSNSLRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSYTEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLHVFEGLTGKLIASILRPGRRPTGKEIVSYVKRIIRHIRSRWPETIIVYRGDSHYGVPEVYSFLASKRNCYSVTGLGGNDVLLRSVKDIIEEVKKHGAGYRRYHTFQYQARSWNGSRRVVAKVEMTEKGLNVRFISTDIQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYVLVHAFQTNLLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKCLTILEHLRSVPWPSTAIP
>NC_010831.1|WP_012474676.1|1362680_1363679_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MYTPLFSLPIARFRFTIEPTEEIRLPEYKGSAFRGGFGHAFKRATCITRDRYCEPCILKSSCTYFKVFESKVSRETAERLRLGGDAPHPFIIEPPLNRQGYFEPGDRLSFSLVLIGTAIGQLPFFVYAFMILGESFGIGRGRGRFRLLEVEDENGKQLYDEGNLAGGFVIRSAGEIMGQENATEDREITLSFKTPLRMKTSLGRERKELLTRMDDHASVRVLLKSLYHRAFVLNQLYGEGVAEDAYESRNLPLIDGDVDIVRSDTFWHDWTRYSQRQQRHMKLGGLMGDVTLGGKTAQYEPLFRLGEYLHVGKGTGFGLGKYRIEGRSGGAL
>NC_010831.1|WP_012474675.1|1361531_1362674_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MTKALISHKVSLTTLSPVFIGAGAEHVLSPYSDFVQRGDSLIYIDTDRLQDAMQGDKALIEAFVKGMRHIENNRLTFVLEKFITGTLGREVDDFAARVVRIDGDIQKNHIRRFIATGGKPFIPGSSLKGAIRTAVLVDWLLNRKAGEPIFNQIRENINKRDRRSLKDMNLEQACFGTISRDVFRNLRISDSSVIESSSLWVGEMRRVALPTEKKKKQQQSSIPQWSEVIGPSVETTFPLSLTTPIEKTGFDFLDHQSVTKLFPIINRISLDSCLRELGELKGNQDFRDFFRFYEKLEQEITSLKTDEAILRLGGGKTWFDNSLGLSIDCEEFRPEALLKKYLDLVLDFKHDPFPSTRSAIVRNGVPVYPLGWVKLTLLKN
>NC_010831.1|WP_153303910.1|1360482_1361523_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKHYNRTDMQALLLIPVGGGQFHFGENGLEDSSDLLHSDTLFSALANIYEYALSGAEIFIDLVESGRLSFSSGMYALLKQGEMSLLFVPKPVVTYRKSDDRKLHKSLKYFSLGVLEEFRKSFESQKHESELDLSVYSSIGNEFLCLADELGGMPDEFKNRSFRRFTTSPKVKVHTTFEDNDRLYHETTVQFHTFSAAGVEYGGAYCVLFNADALTYEERQEFLAALRIMADEGVGGQRSSGKGQFREVREVTIDIPDEESASAYLGLSIVSPADDSEFNALERYELFVRGGGSLGWRGDSERHRKQARFVKEGALFTKNIAGALVDVSPEGDKTILRNGMNFSIPI
>NC_010831.1|WP_012474673.1|1359761_1360496_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MQKLIGKVRLSGRIKAETGLHIGGSKTALDIGGIDLNVIKTPGGVPFIPGSSLKGKLRSILAREHGSMAISKKEKGVRDGDTTDEDIPIIIELFGNAGDKKDACPSRIIVRDAFLDKEFFNDPVKNEGIFSELEMDYTESKWENTILRKTGTAINPRPVERVPVGTKFDFEIIYNVFNDDKKKLHLNEIIKALRILEDDYLGGLGSRGYGKISFPREFMQYSYKSIENYKNGDDWQELTGIETL
>NC_010831.1|WP_012474672.1|1359333_1359759_+|type-III-A-CRISPR-associated-protein-Csm2
MSEQNGDKSAYEREKELRSKLTDTFVLDYTPETYQAMIDTVKEYSGILVSGKYAITTTQLRNIYTSVKKAKKPKELLPLQVRLAYLAGRNESNPRFKALADTLSLLIRKVKTETQLEHFTEFFTALIAYQKYHEKFSSKKH
>NC_010831.1|WP_012474683.1|1373488_1373749_+|selenobiotic-family-radical-SAM-modification-target-peptide
MDKSGMKKVLAGLSIAGLVTSVTLTGCQKANGSCGAGSCSKTEKVEGGDASKGTGSCSGMEDSASHGTGSCSGMKDDGAAGEGAKE
>NC_010831.1|WP_012474684.1|1373834_1375550_+|selenobiotic-family-peptide-radical-SAM-maturase
MTTTLEKIFPRTLGYLDDAQSMHVLGKSPDAFADAIRSDVSFFPKAAFLADLADVEFACWNVERMHQEFNRPSRGAVINPRLQIVPVTYDISICFNDSATGISGNIEPDEGWILVWKGPETGTLYVEKADEQMLLALKVLSEEEHVSRGDQLNVINQAIDYAARKGIVLKAPYLVSRSLQGFPMGNNIPERYFTASVFTLQWHITNACDLHCRHCYDRERRSPLTAEQGLAIIDDFDRFCQEKNVRGHVCFSGGNPFMSPHFFLLYRSAVDKGMATSLLGNPVSAEELQRVIDIRMPDYFQVSLEGLEEHNDYIRGEGYFSRVMAFLDLLREKQVSSAVMLTLTQANIDQILPLADILRGKTDYFTFNRLSQVGEGALLSLPDSHAYRRFLKEYTAAAADNPVIGLKDNLINILRERKGVTPFGGCTGFGCGAAFNFVALLPDGEVHACRKFPSLIGNILENSFLTIYESLEAQRYRMGPDECKECRLRPVCGGCMAVVHGMGLDPFTEKDPFCFIEVEKSKGKSEKSKGKSEKGEGERGKRKSKGRRQKLKGNRGKGKGGREKGEEKVKS
>NC_010831.1|WP_012474685.1|1375831_1377046_+|LL-diaminopimelate-aminotransferase
MFDEIEFEKIKRLPKYVFAAVDELKMAERRAGEDVIDFSMGNPDGPTPQHIIDKLVESVQKPRTHGYSVSKGIYKLRQAICGWYLRRFGVELDPDTEVVASMGSKEGYVNLVQAIINPGDVAMVPDPCYPIHSQAFILAGGNVHRFKLVFRDDFTLDEDAFFRNIEKAIRESSPKPKYLVVNFPNNPTTVTVELSFYEKLVALARKERFYIISDIAYAEITFDGYRAPSILQVPGAKDVAIESYTLSKTYNMAGWRVGFLAGNPKLVGALMRIKSWLDYGMFTPIQVASTIALNESQECVGEIRDTYQRRRDVLVKSFANAGWEMQQPKASMFVWARIPEPFRERGSLEFSKMLLKEAKIAVSPGIGFGTYGDEYVRIALIENEERIRQAARNVRKFLRSHGCG
>NC_010831.1|WP_041471565.1|1377084_1377618_+|hypothetical-protein
MENDTSGQLLADLFDEYSEWYMGLAAEYGSLPRSLSGLSKEGRQFIYLLDDLELHHMMRNKYLRYILDELESVVYAYGGIDLRGDSDAAEVAEVLSVSAADSENYITGDWRVVRDEDGKVADLAHLGTRQGNDPEEHPGTWFMAGSVSFSALEKSRFGALWDEAKPGVIFRDRNGEG
>NC_010831.1|WP_081433117.1|1378004_1379348_-|phosphatidylserine-decarboxylase-family-protein
MLRKILLSIALLLLPAFGYTAAKQSAPNANDKAIPYKVGQWQPSDQKILNQWVEGLVRETNANGQPLVPVVQELKNLIESDPELFMLFMQMFEQVPSNTPKYQKDPTGQPQIRDYRQMLQLINRVMTKAPEFNQTGLVGFPINAIINWPMATPAGTTVFLNPKVNSQLKKILNQWGEFLKSKESRYVLTDHPETGWFGRDAKKAMPTFIKDFQCDPKQSYYGFTSWDDFFTRQFREGRRPVASPMDHAVIANSCESAPYRLARGVKGSDTFWIKSQPYSLYHMLAGDPLIGQFEGGTIYQAFLSALSYHRWHSPVSGRVVKTKLIEGSYYAEALSVGFDPAGPNESQGYITHVASRALIFIEADNPDIGLMAVLFVGMAEVSSNEITVTVGQHVSKGDQLGMFHFGGSTHCLIFRPQVKLEFDLRSQTPGLNSTNIPVRSKIATVLK
>NC_010831.1|WP_012474689.1|1380043_1380229_+|DUF2934-domain-containing-protein
MSDKQKSVEKDEVTQEQREEQVRLAAYYLWKENGEPQGTDLDDWLHAETALVAEGEEVAAE
>NC_010831.1|WP_012474690.1|1380443_1382036_-|bifunctional-ADP-dependent-NAD(P)H-hydrate-dehydratase/NAD(P)H-hydrate-epimerase
MLPILTAGEMSRADRAAIELLHTDEPRLMELAGREASRIIAQTFETTGREGLHELDFLLVCGKGNNGGDGFVLARHLLNLGASVDLILLYPSENLAEINRNGLTIVQAYRNHTEKLRIFNGLDEAMPLISEREYDGIVDALLGTGLRLKRDGEPLKSPLKQAVELINTLREQSPAVTIALDLPSGLDATSGFASQPAVMADLTVCMAYMKTGFFLNSGPALAGEIHVAEISIPPFLVENCTCHLTDEDFAAEQFTLRDTDGAKHRNGKLLVIAGSSDSRSSMLGASLLTAKAAINTGAGYVCVSLPPELSGPLHTYVPSATVTGREYESLLEKAAWADAIVIGCGLGREKDTIDLLHRLLADPVIASKKLVLDADALYALSQNGFSLAEHEYADTLLTPHTGEFSRLTGLSLDAIHADPLDAVRSFSSANKVNLLLKGNPTFITSPSGDLLVNNSGTEALSTAGTGDVLAGMIGALAAKGTDTFHAGAAAAWFHGRAGDLARDISSLVSSEDVLGAIPKAIAEIFFAEEE
>NC_010831.1|WP_012474691.1|1382042_1384328_-|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MTLKEPEVNPELAKEHGLNAEEYGQILEILGRTPTFTELGIFSVMWSEHCSYKNSIAVLKTLPREGGALLTSAGEENAGLVDIGDNLAVAFKIESHNHPSAVEPYQGAATGVGGIHRDIFTMGARPVASLNSLRFGSPKDPRVRYLVDGVVRGIGDYGNSFGVPTVGGEIYFEDAYTGNPLVNAMSVGLVEHQNTVSATAEGEGNPVLIVGSSTGKDGIHGATFASEDLSEASEDKRPSVQVGDPFAEKLLLEATLEAIATGYVAGLQDMGAAGLTSSTSEMSSRGISTNGSGGIEIDLDFVPIRENDMSAYEIMLSESQERMLIVAEKGHEQNIIDVYSKWDIHAVIIGTVTADNQLRVRHHGAVVAEIPAESLVLGGGAPVYIREAVEKKPDNPPADPRPDSSIDLRDASLRLLSRPNIASKQWVYQQYDSMVQTNTVTPTGQTDAAVIRIKGTKKALAMKTDCNGRYVYLNPKKGGMIAVAECARNIACSGATPLAITNCLNFGNPYKPDVYYQFKASVEGMGEACRAFNTPVTGGNVSFYNESSLTGTAIYPTPVIGMIGLLEDIEHLTGSTFMHPGDAILLLGNPPLTLDGSEYLVMQYGTPGQDAPAFDLDHELNLQKLLVGLAQSGLMSSAHDISDGGLFTALVEKSIMDSTNPLGMAVNLEQEITTPSFIQELLFSEAQGRVLLSVRPENAARVIEKAEHQGVPAKVIGQVREQDVSIAVNGKEILSFDTAELKQTYYHALEEALHLDEIEIL
>NC_010831.1|WP_012474692.1|1384399_1387489_-|preprotein-translocase-subunit-SecA
MLKIFEKVFGSKHDKDIKKIKPLVDEINEIYATFASLSDDQLRAKSMALKSNLQEELTLIRQQNSDLSGKLENPDITISQIESINRELDELEKKYEEETAAALEKILPETFAIVKDTCRRLKGHTYQVMDHTMTWDMIPYDVQLLGGIVLHQGKVTEMATGEGKTLVSTLPAFLNALTGRGVHIVTVNDYLAQRDREWMSPVFEFHGIETGVILSGMRPEERKKEYACDITYGTNNEFGFDYLRDNMAGSPADLVQKEYYYGIVDEVDSVLIDEARTPLIISGPVPNANTSKFTEIKPWMERLVKNQQNLVAGYLAEAEKVVKEKPNDFQAALALLRAKRGQPKNTRLIKMLSQTGMAKLMQSAENEYLKDNSRRMHEVDDELYFSIDEKSNAIDLTDKGRDFLSKLSNQDSDLFLVPDVGAEIAAIESDEALDTEQKIKKKDEVYRLFSDRSEKLHNISQLLKAYSLFEKDDDYVVQNGQVMIVDEFTGRILPGRRYSDGLHQAIEAKENVKIEGETQTLATITIQNFFRLYKKLSGMTGTAETESAELFDIYKLDVVVIPTNRPIIRKDQDDYVYKTRKEKYAAIIGKIIELQKKGQPVLVGTASVDVSETLSRMLRAKKITHNVLNAKQHGREAEIVASAGQNGAVTIATNMAGRGTDIKLGEGVKELGGLYILGSERHESRRIDRQLRGRSGRQGDPGESIFYVSLEDNLMRLFGSDRVISIMDKLGHEEGDVIEHSMVTKSIERAQKKVEEQNFSIRKRLLEYDDVLNQQRDVIYKRRKGALTKKRLTADIFDLLHDYSENTVNQYAREFDVKGLEEQVLRDLSVEFRIESITFENEGVEKTAEQLYKAALEFYKRKEDVVPEEIMGQIEKYAVLNVIDQKWREHLREIDSLKEGINLRAYGQKDPLLEYKQEAYKLFVSMLGEIEHETLSLAFKLFPVTEEAREKIEQEQKKSQVQQDRLVARHEKAETAYENSGSRPEGRQEKKAENGKEPLQQPVIADKTPGRNDPCSCGSGKKYKNCCGK
>NC_010831.1|WP_012474693.1|1387852_1388914_+|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MIIAEYGRRLDENEWAPCIDMLLDAEHIVLTTHVNSDGDGLGSEAALAEVLRTLGKTVSIVNPTEVPFNYLFLNDVAEITVFNDHVEEQIELISLADLVVLLDANLSERMGSLWSHVHFARELGKLQVLCIDHHLDPEDFADLMVCESYASSTGELIYDLVSAMEERVGEKLFSPGVATGLYVALMTDTGSFRFPKTTPYVYNLAGDLVAKGADPNEIYDKVYNALKPQALKLLGAALSEIRFFDDGRVSWLYISQEMLNDTESKLFDTDLIIRYLLSVPSVRIAVLMVEMLDGRTKASFRSRGDIYVNLLAKKYGGGGHKNAAGSLLHMAPEKATKIVLSDIREFLKSSEIV

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Crispr_ID: NC_010831_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010831_4

2032699-2032803

Orphan

Consensus_repeat	Method
GTCAAGCACGGGAATGACAGGAGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010831_4

>merge|NC_010831|4|2032699-2032803|CRISPRCasFinder
GTCAAGCACGGGAATGACAGGAGAGGGGGAGTATGGACTTCCCGTGTAAGACCTGTGAAACAGATGCTCAGATTTCACGGGTCAAGCACGGGAATGACTGGAGAG

>NC_010831|4|4|2032699-2032803|CRISPRCasFinder
GTCAAGCACGGGAATGACAGGAGAG	GGGGAGTATGGACTTCCCGTGTAAGACCTGTGAAACAGATGCTCAGATTTCACGG
GTCAAGCACGGGAATGACTGGAGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010831.1\|WP_012475268.1\|2030748_2031888_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NC_010831.1\|WP_012475277.1\|2043612_2044485_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225088
NC_010831.1\|WP_041471358.1\|2023893_2024439_+\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|376858
NC_010831.1\|WP_012475259.1\|2022641_2023556_+\|polysulfide-reductase-NrfD	unknown	unknown	gnl\|CDD\|225838
NC_010831.1\|WP_012475269.1\|2033053_2034973_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239550
NC_010831.1\|WP_012475266.1\|2029074_2029809_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213228
NC_010831.1\|WP_012475261.1\|2024563_2025280_+\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|235380
NC_010831.1\|WP_012475270.1\|2035451_2036396_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NC_010831.1\|WP_012475272.1\|2038821_2039424_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714
NC_010831.1\|WP_041471359.1\|2045169_2045682_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|320265
NC_010831.1\|WP_012475263.1\|2026297_2027146_+\|undecaprenyl-diphosphatase-UppP	unknown	unknown	gnl\|CDD\|237134
NC_010831.1\|WP_012475279.1\|2045903_2047412_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223112
NC_010831.1\|WP_012475265.1\|2028253_2029048_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376777
NC_010831.1\|WP_012475273.1\|2039420_2040092_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275145
NC_010831.1\|WP_012475276.1\|2042244_2043099_+\|deoxyribonuclease-IV	unknown	unknown	gnl\|CDD\|179214
NC_010831.1\|WP_012475274.1\|2040344_2041322_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NC_010831.1\|WP_012475264.1\|2027385_2028246_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NC_010831.1\|WP_012475262.1\|2025617_2026301_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|173287
NC_010831.1\|WP_012475271.1\|2037179_2038757_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NC_010831.1\|WP_012475267.1\|2029835_2030717_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|275223

Protein	Function_ID	Function_description	E-value
NC_010831.1\|WP_012475268.1\|2030748_2031888_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.11157e-61
NC_010831.1\|WP_012475277.1\|2043612_2044485_-\|ABC-transporter-permease	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	1.56314e-41
NC_010831.1\|WP_041471358.1\|2023893_2024439_+\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|376858	pfam02613, Nitrate_red_del, Nitrate reductase delta subunit. This family is the delta subunit of the nitrate reductase enzyme, The delta subunit is not part of the nitrate reductase enzyme but is most likely needed for assembly of the multi-subunit enzyme complex. In the absence of the delta subunit the core alpha beta enzyme complex is unstable. The delta subunit is essential for enzyme activity in vivo and in vitro. The nitrate reductase enzyme, EC:1.7.99.4 catalyze the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen. This family also now contains the family TorD, a family of cytoplasmic chaperone proteins; like many prokaryotic molybdoenzymes, the TMAO reductase (TorA) of Escherichia coli requires the insertion of a bis(molybdopterin guanine dinucleotide) molybdenum (bis(MGD)Mo) cofactor in its catalytic site to be active and translocated to the periplasm. The TorD chaperone increases apoTorA activation up to four-fold, allowing maturation of most of the apoprotein. Therefore TorD is involved in the first step of TorA maturation to make it competent to receive the cofactor.	3.71758e-21
NC_010831.1\|WP_012475259.1\|2022641_2023556_+\|polysulfide-reductase-NrfD	gnl\|CDD\|225838	COG3301, NrfD, Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism].	1.23715e-28
NC_010831.1\|WP_012475269.1\|2033053_2034973_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|239550	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.	2.97182e-22
NC_010831.1\|WP_012475266.1\|2029074_2029809_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213228	cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	2.39327e-110
NC_010831.1\|WP_012475261.1\|2024563_2025280_+\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|235380	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.	8.24788e-133
NC_010831.1\|WP_012475270.1\|2035451_2036396_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	1.41633e-92
NC_010831.1\|WP_012475272.1\|2038821_2039424_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	2.93682e-91
NC_010831.1\|WP_041471359.1\|2045169_2045682_-\|hypothetical-protein	gnl\|CDD\|320265	cd15137, 7tmA_Relaxin_R, relaxin family peptide receptors, member of the class A family of seven-transmembrane G protein-coupled receptors. This group includes relaxin/insulin-like family peptide receptor 1 (RXFP1 or LGR7) and 2 (RXFP2 or LGR8), which contain a very large extracellular N-terminal domain with numerous leucine-rich repeats responsible for hormone recognition and binding. Relaxin is a member of the insulin superfamily that has diverse actions in both reproductive and non-reproductive tissues. The relaxin-like peptide family includes relaxin-1, relaxin-2, and the insulin-like (INSL) peptides such as INSL3, INSL4, INSL5 and INSL6. The relaxin family peptides share high structural but low sequence similarity, and exert their physiological functions by activating a group of four GPCRs, RXFP1-4. Relaxin and INSL3 are the endogenous ligands for RXFP1 and RXFP2, respectively. Upon receptor binding, relaxin activates a variety of signaling pathways to produce second messengers such as cAMP.	0.00904016
NC_010831.1\|WP_012475263.1\|2026297_2027146_+\|undecaprenyl-diphosphatase-UppP	gnl\|CDD\|237134	PRK12554, PRK12554, undecaprenyl pyrophosphate phosphatase; Reviewed.	1.53177e-132
NC_010831.1\|WP_012475279.1\|2045903_2047412_+\|amidophosphoribosyltransferase	gnl\|CDD\|223112	COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism].	0
NC_010831.1\|WP_012475265.1\|2028253_2029048_+\|ABC-transporter-permease	gnl\|CDD\|376777	pfam02405, MlaE, Permease MlaE. MlaE is a permease which in E. coli is a component of the Mla pathway, an ABC transport system that functions to maintain the asymmetry of the outer membrane. In NMB1965 it is involved in L-glutamate import into the cell. In Arabidopsis thaliana TGD1 it is involved in lipid transfer within the cell.	7.43806e-72
NC_010831.1\|WP_012475273.1\|2039420_2040092_+\|radical-SAM-protein	gnl\|CDD\|275145	TIGR04349, Radical_SAM_domain_protein, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE, gammaproteobacterial type. Members of this radical SAM domain protein family appear to be a form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in preQ0 operons species that lack members of related protein family TIGR03365.	6.23907e-87
NC_010831.1\|WP_012475276.1\|2042244_2043099_+\|deoxyribonuclease-IV	gnl\|CDD\|179214	PRK01060, PRK01060, endonuclease IV; Provisional.	3.22421e-164
NC_010831.1\|WP_012475274.1\|2040344_2041322_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	2.46338e-73
NC_010831.1\|WP_012475264.1\|2027385_2028246_+\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	7.24159e-43
NC_010831.1\|WP_012475262.1\|2025617_2026301_+\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|173287	PRK14826, PRK14826, putative deoxyribonucleotide triphosphate pyrophosphatase; Provisional.	4.82061e-145
NC_010831.1\|WP_012475271.1\|2037179_2038757_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NC_010831.1\|WP_012475267.1\|2029835_2030717_+\|MCE-family-protein	gnl\|CDD\|275223	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD. Members of this protein family are the MlaD (maintenance of Lipid Asymmetry D) protein of an ABC transport system that seems to remove phospholipid from the outer leaflet of the Gram-negative bacterial outer membrane (OM), leaving only lipopolysaccharide in the outer leaflet. The Mla locus has long been associated with toluene tolerance, consistent with the proposed role in retrograde transport of phospholipid and therefore with maintaining the integrity of the OM as a protective barrier.	4.56277e-17

>NC_010831.1|WP_012475268.1|2030748_2031888_+|serine-hydrolase
MKRYIRIHVLLSAFMLVTFLNTGAAAERFKPLEALMKHSIADGVFPSASIAVIYKDKVVFHKAFGRLTYSRSSSPVDTSTVYDLASLTKPLVTTAIIMQLSERDSLDIDAPVSRYIPEFARNGKENVTIKNLLLHNSGLIAHRFFITTCGTPEEVMQAIYNEKLLSSPGASTSYSDLGFITLGKVIEQVTGKNLEDNFHARFSQPLAMNSTLFNPSSSLRPGIPPTEEDTRWTIRKPRPLVHDHNAALLGGIAGHAGLFSTTGDLAVFATMLMQEGEYNGARYFKPSTLRKFTERYPGSRALGWDLRSLNGRSSSGDYFSPDSYGHLGYTGTSIWIDPQKDLAVIALTNRVYPSSKNIKIRKFRPLLHNTVIKCLGLEE
>NC_010831.1|WP_012475267.1|2029835_2030717_+|MCE-family-protein
MKNPNTLKWGDLKTGIFFVIGLGLAAYLGLVVGKNSSLFKSAITIQMMAQNVGSLKENNFVSVSGKKIGTVSKMEFINRNDSLFILVQMRLEEEFAPIITNDSKARIISLGILGDKYVDITTGSGKPVEEGDFITLDESETGLDNLTKTAGEAVGQINTLLDKINNGKGPLAKLLGSEEMAGDLEKTLNNLQTASAELTSFSRELKSGKGLLPKLINDKQLASETRETIVNIKQAAARTDSLVQKLNSNEGTIGQLHSNPALYSNINKSVESLDSLIVDLKENPKRYVRFSLF
>NC_010831.1|WP_012475266.1|2029074_2029809_+|ATP-binding-cassette-domain-containing-protein
MIELQDITLRYGTREILDNVSLTIEDNKIKAVLGPSGVGKSTILKLILGLIKPNCGKILIDGVDITQLKESQLYPIRRKMGIVFQGNALFDSMSISENLGFFLRENLKLSEKETERRVAEQIAFAGLEGYEDSLPENLSGGMKKRVAIGRALIFNPKMILFDEPTAGLDPVSSKKILGLISSLRNKSDLGAAIVTHIIDDVFQVADSVAVLYQRKIIFDDETGKLHDSTHPFIQSILSDKILEQ
>NC_010831.1|WP_012475265.1|2028253_2029048_+|ABC-transporter-permease
MERTPIGTIPDRINLSMKEFFLTMQDFFLFSLRAFITIPKIRRYWRDFLDQAKIAGADSLPIVLVSSIAIGALLAVEVGNLLEDFGAKTMLGRSTALSVIRELGPLIMGLMLSARYGSRNGAELGAMKISEQIDALRAFGTDPVAKLVMPRLVAALIMFIPLTAIADFSGLYSAALLAEHYHKIDPGIFWNAVFPRLVFKDFVVGFLKAPVFAIIITLVSCFNGFIAQGGTAGVGRSTIKGIVVSSGLILVANFYVSKLVLENM
>NC_010831.1|WP_012475264.1|2027385_2028246_+|PHP-domain-containing-protein
MPYSLSGVGHNGFGKADLHIHTKCSDGVFTPEEIVEKAKKTGLKAISITDHDSVLGIDEAKPLAIEYGIELITGVEMSSTYQGHDIHILGYFFDHKNPELKSYLELCKQLRTERAERMVGKLAKIGVKIEIEQIILKAQNGSVGRPHIAAVLQDGGFVRSFSEAFSKYLGSHSPAYVKSIETPPAEIIKLINKASGLSFLAHPGQNIPDEILRKLINFGLDGIEIIHPSHDSYKMNYYREIANEYFMLFSGGSDYHGLKDQEEDHFGQTTIPYEWVTKMKSRIVTA
>NC_010831.1|WP_012475263.1|2026297_2027146_+|undecaprenyl-diphosphatase-UppP
MTLFEAIILGIVQGLTEFLPISSTAHLRIVPALAGWQDPGAAFSAIVQIGTLAAVLIYFYKDIHSITRGVFDGLRSGRPFETQESRMGWMIAAGTMPIVILGLLFKTEIETSLRSLYWISVALIVLALMLTLAEWLMKRRADKGLKAKTMNDIGWKEALLIGLAQSIALIPGSSRSGVTITGGLFLNLSRETAARFSFLLSLPAVFAAGIYQLYETRDQLMASGSDLLNLAVATLFAGIVGYASIAFLINYLKQHSTALFILYRIALGVGILGLIANGYLQA
>NC_010831.1|WP_012475262.1|2025617_2026301_+|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MQNATETLTIVLATNNRDKVREIKPLLEHIAPHISVNSLADLNVELEIEETEETLEGNAKLKTDAVFNHLSDRFAFLITVADDTGLEVSGLNGAPGVYSARFAPVPEGTSPTYDDNVNHLLKEMENVTDRKATFRTVVALKGRITGKNAPRFFETAVEGAVEGEITREKTGDKGFGYDPVFWVNSAQATFAQMSTEEKNRLSHRSKAVKKAVEKLREILNPEHPSLP
>NC_010831.1|WP_012475261.1|2024563_2025280_+|pyridoxine-5'-phosphate-synthase
MQLAVNIDHIATLRNARNEQQPDPVTAAAIAELSGASGIVCHLREDRRHIKDRDLERLRESVTTKLDLEMAMTEEMQRIAIRTKPELITLVPEKREELTTEGGFDIISHYDRLAEFIKPVRDAGIEVSLFIEPEEKAVALAAKAGADIVEMHTGPYSLKKRPEDIDAEIKRIRIAASYARDSGLRVVAGHGLNYYNILPFRRIEEIEEVSIGHALIARAALAGMETAVRDMLHLINEA
>NC_010831.1|WP_041471358.1|2023893_2024439_+|molecular-chaperone-TorD-family-protein
MRNTIHTLRFLSLCFAYPNDAFLPALREKQEHIEKNRETFETLTGLFEQENNEQLQGEYTRLFITGYPNTPCAPYESVFLEGRMLGACCRKIQLHYEEWGMTVDPGLVDHISTELEFLAFLASAATLDETREDARHTYHAFIQDHLSRWLPLFSGKLSSHAKLAPYRHLASLLETSIQPSL
>NC_010831.1|WP_012475259.1|2022641_2023556_+|polysulfide-reductase-NrfD
MSFVHQDVWHWQIATYLFLGGLGGATVAIGAMLHMFENGDKKIISAAVLSAIGFMVIGTIFLLADMLQPLKAIYALTNPRSWIFWGVVFINIYFLASIAYVIPLLKSWPRLEPLISKLPQKILALLERFNKMAALGGATAGFLVAIYTGLLISSAPAISFWNTPALPLLFVFSAFSTGAAFLLLLFTFSREEGSWAIVQKLEQLDAALIVTELIILGAYFNFAFFLPTGARESASILFETPMFVYGFLGLGLLLPLLIETYSIFFSGHAKSSAFLMVTAGSLVLVGGFLLRYYVLHAGVFQYPW
>NC_010831.1|WP_012475269.1|2033053_2034973_-|FAD-dependent-oxidoreductase
MDRREFLGKFFKRSGIAGGIAAVGAAGALGYYQPRKEIYSEGEEDADGLKERLEEPGKAVVVGGGLAGISAAMELARRNFEVTLVEASAEPGGKLTGWEVDALGTRFPVEHGFHGYFNQYYNLNEMFAESGVGDVFMPAPGYPVLFREQPLEVFGNTPKLFPFNLFSVLQQSSSLDVIPIMKDFRQMLPVLDMFRYEYDRTFERYDGVDFLTFCREQEIYEPFLRTVLHPFSDATMNRMEVLSAAEAIRYFHFYFMGSPEALGYRITTRNCMDALIRPMERRLKELGVRMLLGKKVSRIVVDGQSVSGVELDGGGSGGLVVRVDAAAVREGEWASFKGGNGMPVLLTRRDGEYIAFDATCTHMGCPVVPDEKSEGFFCPCHAGMFDGNGAVVSGPPETPLGKLDVTVAGQELLVFSGTTGGKEVLECDYCVMAADVSGTKRIVERSAMRQPEFESQIAALGTADPYVVWRLWLDKPLTSAEYPFYTVAGYTYTDSISLFSRFQEPFISWSKQQGGSVVELHAYAIAPGDMRSDEVIKQTMLREMHHMFPETRDARILYDVYMQQQNFTRWAPGDHAGRPVSETPLDNLFLAGDWVKVDAPVFLMEAAAFTGRLAANAICRKEGLKPTPLPIVPMDGLFA
>NC_010831.1|WP_012475270.1|2035451_2036396_+|tRNA-epoxyqueuosine(34)-reductase-QueG
MDKENTVQAILRKAEECGFCAAGFSSITPCSEESTRLREMIRENRHGEMLYMQKNIASRDNPENLLPGAKTVFSAAMPYHFPLETHAESGRLSRYAMVRDYHRVLSEKLEEVLECIRENHSGEVNGKVCVDGIPVFEKSWAEKAGLGRKGKNTMLIVPDKGSLVFLGEILLDIELPFTPEHLPDPCGECNSCINSCPTGAIIEKGKIDARKCISYLTVELKREFTPEESGMTGEWMFGCDICQEVCPHNQKSLKKKTAAGFEPQKELLTITPEEILSLTKSGFKKLFASTPVYRTGLKRLKRNARAVLENLKEC
>NC_010831.1|WP_012475271.1|2037179_2038757_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MSDPVIKRALVSVSDKSGVVEFCRELSSMGVEIFSTGGTLRKLQESGVAAASISTITGFPEIMDGRVKTLHPKIHGGLLAVRDNADHIAQARDNGIGFIDMVVVNLYPFQETVAKPDVTFEEAIENIDIGGPSMLRSAAKNHESVTVITESADYRTVLDEMRENNGATTRSTRLKLAGKVFTLTSRYDRAIADYLAASSEGEASSEAGSISVRLEKEIDMRYGENPHQNAGFYRMDDGSGSRSFEEYFRKLHGKDLSYNNMLDTAAATALIEEFRDEAPAVVIIKHTNPCGVAQADTLVEAYRKAFSTDTQSPFGGIIACNRPLDMETAKAIDEIFTEILIAPAYEEGVLDMLMKKKNRRLLLQRKPLLQEVTEYKSTRFGMLVQERDSRIASRDDLKVVTKRQPSAQELDDLMFAWKICKHVKSNTIVYVKNRQTVGVGAGQMSRVDSAKIARSKAAEAGLDLNGSAVASDAFFPFADGLLAAAEAGAMAVIQPGGSVRDDEVIAAADEHDLAMVFTSMRHFKH
>NC_010831.1|WP_012475272.1|2038821_2039424_+|phosphoribosylglycinamide-formyltransferase
MANHKTRLAVFCSGTGSNFQSLYHALKERNIPAEFTLCLSNRPECGAFSFADQHAIPTVHLSEKQFDTHGAFAAAMLKALDEHAVEYILLAGYLRKVPESVVNAYAGKTLNIHPALLPKFGGPGMYGINVHKAVLEAGEKESGATVHFVDPEYDKGPVLLQHKVPVKPGDTPESLASRVLDCEHQLYPDALELLIRGTEL
>NC_010831.1|WP_012475273.1|2039420_2040092_+|radical-SAM-protein
MSETVLINEIFRSIQGESTFAGTPCTFIRLSGCDSACRWCDTRYASVENGTAMTLSEIERRADGFRTSLVEITGGEPLQQEPVYALMQQLCDKGHTVLLETGGFLPVDRVDPRVHKIIDLKAPSSGESGRICTSNIELAVSAAEPLKKSFEFKLLLASREDYDWAVDLLNRYRLNQHCTVLMGTVFNKLHPAELAAWILEDNLNVRLQLQLHKYIWPPDMRGV
>NC_010831.1|WP_012475274.1|2040344_2041322_+|glycosyltransferase-family-2-protein
MPSNPVLSLIVPFYNEEESLPMLLDQICQAMEEQELHALFELPFTFELLMIDDGSTDGSSGFIRKQIDRRPEVKLVSLQKNFGKTAALAAGFRYASGEVVVTLDADLQDDPFTVKELVAKLQEGYDLVSGWKRQRNDPLSKTIPSRIFNTTTRLLTGIELHDFNCGLKAYRKKVVASLDLHGEMHRYIPVLAEWNGFRVTEIPVKHNARRFGRTKFGASRVFPGLFDFFTVLFITRYLRQPMHFFGMLSLISFLAGFGISLYVTIGKIFFNQAVVNRPILFLGILLIIVAVQFFSIGLLGEMLTRDTSSTPDYTVRETVNVDEDR
>NC_010831.1|WP_012475276.1|2042244_2043099_+|deoxyribonuclease-IV
MRYIGAHVSIAGGIENAPLRAQEIGATAFALFTKNQRQWKAPALTAKTIEAFRENCERCGYRPEHILPHDSYLINLGSPDAQKLDRSRNAFIDEMQRTEALGLVRLNLHPGSHLRESSEEACLETIAESVNLAHEATNTAVAVLENTAGQGSNLGHTFEQLAFIIQRVHDKSRVGVCLDTCHLFAAGYDLRTEEAVNGMFELFDASIGLHYLKGMHLNDAKPELDSRRDRHESIGKGKIGLDGFAAIIRHPASAEIPLILETPQPEIWSEEITLLRSFEEAQNC
>NC_010831.1|WP_012475277.1|2043612_2044485_-|ABC-transporter-permease
MNLFFVIREGFSGIWRAKLPAAVTVVVGFFALVLLGLFATVSLSFFDIIEEVRGRVELEVFFPDRVSDEAVVTLRGNIEKLDGVREVGYISRDSAAAVFRQEFGKDIVEILGLNPLPRSAKVLVNPRYAAPDSLKGIVTAIAAYEPGLDIRYNKVFLKQLEDNARLFTVLTAGSGMLIAVATIVLVGYTIRLAIYSRQQKIKTMRLVGAANWFISAPYIIEGGIQGLLSGGFAALAIYLLSDQLLLRYEPGIYEVLHPSTVYVYPVLVGLGFFLGVFGSSVAVRKYLRKA
>NC_010831.1|WP_041471359.1|2045169_2045682_-|hypothetical-protein
MPLAAKKTASPPSLWIWFAITFLWGTVFYGTSIVMLHLSASLLEQGFFNPAWEEIYSVYLIYCVALLIVALSAMFLKKRLDPQGEKQTKRQQEVIAGKREKVFVSLAGSFATSFFFTVLTAIVFSFSSGMAAMTVALTVPVVLLAAGLNISAGLGASLLVGLVIFVLKKV
>NC_010831.1|WP_012475279.1|2045903_2047412_+|amidophosphoribosyltransferase
MCGVFGVYNSKTPAEDTFYGLYSLQHRGQEAAGIVVADYDKKNKKKTVYRQHKGMGLVSEVYKDSGIFKKLPGHAAIGHNRYSTTGASKSISNIQPFSLTYRSGNLAIAHNGNLTNSRTLRKELTERGIIFQASSDTEIIPHLAALSKEKEPLHQIYHALRQVQGAFSLVILANDQLIAARDPYGVRPLALGKKIDPKTGEAVYYVASETCAFDILAVDYVRDIEPGEILLIDKFSAKNHKPTSLFLPPSKRKARCIFEYVYFARPDSLVFNHSVDKVRRNLGKSLARESMIETPNDDNKHQIVVSVPDSSNTAALGFVRESNNICRPARFEHGLIRNHYVGRTFIQPGKESREIKVRSKYNIIRGVLQDRQIIVIDDSIVRGTTAKMLIKLIREAKPKEIHLHISSPPITNPCFYGMDFPTKVQLLTYMFADAKDNDEELENIRKYIGVDSLKYLSLQGMLNSAPRFENETRSYCTACFTGDYPIRMDDATTDKEENDSGE

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Crispr_ID: NC_010831_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010831_5

2062764-2062865

Orphan

Consensus_repeat	Method
CGGGAATGACAGGAGATGGGGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010831_5

>merge|NC_010831|5|2062764-2062865|CRISPRCasFinder
CGGGAATGACAGGAGATGGGGAGAATGGATTCCCGTGTAAGACTTGTGAAATAGATGCTCAGATTTCACGGGTCAGGCTCGGGAATGACAGGAGAGGGGGAG

>NC_010831|5|5|2062764-2062865|CRISPRCasFinder
CGGGAATGACAGGAGATGGGGAG	AATGGATTCCCGTGTAAGACTTGTGAAATAGATGCTCAGATTTCACGGGTCAGGCT
CGGGAATGACAGGAGAGGGGGAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_010831.1\|WP_012475303.1\|2075110_2075866_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_010831.1\|WP_012475288.1\|2057981_2058860_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NC_010831.1\|WP_012475299.1\|2071753_2071981_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378366
NC_010831.1\|WP_012475301.1\|2073621_2074053_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NC_010831.1\|WP_153303951.1\|2057368_2057743_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NC_010831.1\|WP_041471360.1\|2057754_2057934_-\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012475294.1\|2065663_2067094_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NC_010831.1\|WP_012475292.1\|2061386_2062184_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|238816
NC_010831.1\|WP_012475300.1\|2073192_2073465_+\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NC_010831.1\|WP_012475290.1\|2059945_2060635_-\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_041471630.1\|2056711_2057311_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NC_010831.1\|WP_012475295.1\|2067672_2068863_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_010831.1\|WP_012475284.1\|2054150_2054288_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274132
NC_010831.1\|WP_012475296.1\|2068991_2070413_-\|phosphomannomutase	unknown	unknown	gnl\|CDD\|100090
NC_010831.1\|WP_153303952.1\|2062366_2062636_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012475289.1\|2059376_2059868_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_041471362.1\|2072972_2073215_+\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NC_010831.1\|WP_012475285.1\|2055474_2056335_-\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	gnl\|CDD\|367904
NC_010831.1\|WP_012475298.1\|2071374_2071764_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350320
NC_010831.1\|WP_012475293.1\|2063286_2065137_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729

Protein	Function_ID	Function_description	E-value
NC_010831.1\|WP_012475303.1\|2075110_2075866_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	8.18274e-31
NC_010831.1\|WP_012475284.1\|2054150_2054288_-\|hypothetical-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	5.342e-05
NC_010831.1\|WP_012475299.1\|2071753_2071981_-\|hypothetical-protein	gnl\|CDD\|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	0.00330389
NC_010831.1\|WP_012475301.1\|2073621_2074053_-\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	2.0135e-54
NC_010831.1\|WP_153303951.1\|2057368_2057743_-\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	1.09908e-19
NC_010831.1\|WP_012475296.1\|2068991_2070413_-\|phosphomannomutase	gnl\|CDD\|100090	cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_010831.1\|WP_012475292.1\|2061386_2062184_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|238816	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).	5.80362e-99
NC_010831.1\|WP_012475300.1\|2073192_2073465_+\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	1.05988e-20
NC_010831.1\|WP_012475285.1\|2055474_2056335_-\|dTDP-4-dehydrorhamnose-reductase	gnl\|CDD\|367904	pfam04321, RmlD_sub_bind, RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.	4.45084e-126
NC_010831.1\|WP_012475295.1\|2067672_2068863_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.86179e-36
NC_010831.1\|WP_012475294.1\|2065663_2067094_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_010831.1\|WP_012475288.1\|2057981_2058860_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_010831.1\|WP_012475298.1\|2071374_2071764_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350320	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.09648e-61
NC_010831.1\|WP_041471362.1\|2072972_2073215_+\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	5.35443e-13
NC_010831.1\|WP_041471630.1\|2056711_2057311_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.5705e-102
NC_010831.1\|WP_012475293.1\|2063286_2065137_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0

>NC_010831.1|WP_153303952.1|2062366_2062636_+|hypothetical-protein
MTGERKNGFPCKTCEIDAQISRGDPASMPPGKSCRPVKSKHLFHGVIRHPCPLDSHAGLDPASMRFYRRRMDSRVKHGNDRRWGEWIPV
>NC_010831.1|WP_012475292.1|2061386_2062184_-|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MVFEKELLMAVRAALAAGRLIMDVYESEDFEIEKKGDDSPLTRADRAAHESIVHALESTGLPVLSEEGKSIAYEERKAWKRYWLVDPLDGTKEFISRNGEFTVNIALIDEGVPVLGVVYVPVLDELFFGSTDEGGYYIPVANGSSGSLDRLLERAYALPLAKNERSYRVVGSRSHMNDLTTAFIDSVRDEYPDLEIVQRGSSLKICMVAAGDADIYPRFGPTMEWDTAAGHAVVRAAGKSMIEAGSGKELRYNKEELLNPYFIVW
>NC_010831.1|WP_012475290.1|2059945_2060635_-|hypothetical-protein
MTRVCKVSRTARSAAVMMMALIMLFQVNEVYGKSKKNKIDDKHFAAPNASEDVQRTVKWIGKNYNNQLLPFGVIDKQNAVIHLFSNTGEAVASGPVLLGISKSDRINPKTLKKRLSSIGPSERVTPAGRFQVVLGPDHRGKQVLWIDSQFAIALHPVVNVPGQNRRTRLKTATASDNRITWGCINVQPTLYKNVISSLFKRQGFVYILPEETPVEDFIRQVSLVSPVKK
>NC_010831.1|WP_012475289.1|2059376_2059868_+|hypothetical-protein
MSENNKEHRVNFALVNIKTDQLDIHPETFDENKQVSIQAGINFGVDKQKHLIKVLFNHNFVHQEIEENEKKKITPIIELAVSCVFALDKESWELLEKEEEKVFILPKGLASHFASMTAGTARGILHNETEHTDYNKFIIPANNVGDVIPNNVQIPLEKPSSQN
>NC_010831.1|WP_012475288.1|2057981_2058860_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPVTKGISKQLLPIYDKPMIYYPLSTLMLAGIRDVLVISTPDDLPLFQKVLGNGRDWGIRLSYVEQPSPDGLAQAFLLGEEFIGDDDVCLILGDNIFFGYGFTGMLQRAVQSVSEERAATIFGYYVNDPERYGVAEFDDDGNVLSIEEKPSEPKSNYAVVGLYFYTNDVIEVAKNVKPSARGELEITSVNEEYLRRRRLRMSIMGRGFAWLDTGTHESYQEAGNFIETVEKRQGLKIACPEEIAWRSGWIDDGQLQELAKPLMKSQYGEYLLQLLKRS
>NC_010831.1|WP_041471360.1|2057754_2057934_-|hypothetical-protein
MEEGRKKAKVEEGRKKVKVKSEKWRREGKRQKAKGRRQRQRSKVEEESQKRKGERYCKQ
>NC_010831.1|WP_153303951.1|2057368_2057743_-|four-helix-bundle-protein
MMKKDLAIRLFDFAVSAINLIRKFPKSPEYQVISYQLCKSATSSGANYEEAQAGSSKQDFIYKTEISLREMKESNYWLRIIREIKEESLQERERLNELIGESEELSKILAAIIVRSKENVEASR
>NC_010831.1|WP_041471630.1|2056711_2057311_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MKYTAAAIPDVLVFEPRVFGDSRGYFFESFRKDILQEHVGKVDFVQDNQSKSGYGVLRGLHFQKPPFTQSKLVRVIAGAVLDVAVDIREGSPWYGRHVAVKLDSERNNMLWIPQGFAHGFIVLSKEAIFSYKCDNYYAPDYDAGIRWNDKALGIDWTLPEEDIQVSDKDASLPFLKEAYHFSYDDFRQEKVYPRNGGND
>NC_010831.1|WP_012475285.1|2055474_2056335_-|dTDP-4-dehydrorhamnose-reductase
MNILVTGGNGQLGSELKELAARHEGMTFFFYDLPLLDITDRAMVHRVCGEHAVDAIVNCAAYTAVDRAEDEPEAAYRVNRDGPEVLAEAAKERHALLVHVSTDYVFNGESCTPYHEGDAVSPLGVYGQSKWEGEEKIRAIAPSYMIVRTSWLYSSHGRNFVKTMLRLGSERDELKVVFDQAGTPTLAADLAEALVSMLSRYDREHTYAETYHYSNEGVCSWYDFARAVMRARQLPCRVLPVGSGEYPTKAKRPHYSVLDKGKIKEHWNLEIPHWQDSLERMLKRCC
>NC_010831.1|WP_012475284.1|2054150_2054288_-|hypothetical-protein
MMEVACQLIIAVDLKILEEDEHQLIKQEIRELSNKINALHRRCLE
>NC_010831.1|WP_012475293.1|2063286_2065137_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGKREASEVLLQGLRRLEYRGYDSAGIAVLNGSLSVVKQKGNVASLAETIVRSNGHISGATLGIGHTRWATHGDPSDRNAHPHMNEAGDIALIHNGIIENHTALRVELGKHGYSFSSDTDSEVLVHLIDHLWAQVPFLDFESAVRQALSIIDGAYGICVISSREPETMIVARKGSPLVIGIGDGEYFVASDAAPLVEYTRKVVYLADDEMAVMKRDGYRVKTIDNVEQDKALSELDFELGEIEKGGYEHFMLKEIFEQPKVMQDVMRGRVRLEEGRIQLGGVADHLDELRAAKRIVICACGTSWHAGLIGEYLIEEFANIPVEVDYASEFRYRNPIIGPGDVMLVISQSGETADTLAALQLAREKGATVIGICNVVGSTIARQTDYGIYTHAGPEIGVASTKAFSAQVIVLTMLALALSKARTMSDAEVMEALQSLGNLPDQAGRILENNEQIMEIAGHYKDARNFLYLGRGYNFPVALEGALKLKEISYIHAEGYPAAEMKHGPIALIDEAMPVVVIATKTKDETYKKVLSNIEEVRTRKGRVIAIATEGDEEIEGLVDHVIYVPEAVQFIMPLLTVIPLQLLSYYIAKMRECDVDRPRNLAKSVTVE
>NC_010831.1|WP_012475294.1|2065663_2067094_-|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MLIPVILSGGSGTRLWPLSRAQYPKQLLPLAAEQTMLQETVVRLRNIPDTGPVYCVCNKDHRFMVAEQLRQVTDTVGDIILEPVGRNTAPAAAVAALRIQEQFPEAAMLLLPADHVIQDVDAFAKAVALGSKAANDGALVTFGIVPDAPETGYGYIRATVEKSGENRVFPVEEFVEKPDRETAETYVASGEYFWNSGMFLFKVSTYLEELEAHAPAMLQACRLALENAKSDLDFLRLDKEAFTACPSDSIDYAVMEKTTGASVVPLDAGWSDVGAWSALWGVKERDDCGNVAKGDVLLHDVKDSYIHASSRMVAAVGVDDHVIVETADAVLVASKDRVQDVKAIVERLKREGRDEAVTHVRVNRPWGSYETVDRCDRFLVKRIIVKPGSALSLQKHYHRAEHWVVVKGTARITVDQDVVILREDQSTYIPIGTRHRLENPGKIPLELIEVQTGSYLGEDDIERFDDKYGRAEADSG
>NC_010831.1|WP_012475295.1|2067672_2068863_+|ATP-binding-protein
MLIERDQKGVLGKRIEEEPRRFIQVIYGPRQVGKTTLAQQLVESTRLPVHFVSADLVAAGQSTWISQQWETARLKLKKSSQKEGIIIIDEIQKIDNWSETVKKEWDSDSLHQVQLKAVLLGSSRLLLQQGLTESLAGRFETTYLGHWSYGEMKKAFDFSHEQFVWFGGYPGAASLIHDEKRWAGYITDSLIETSISRDILMLTRVDKPALMKNLFELGCSYSGQILSFNKIMGQLHDAGNTTTLAHYLRLLDTAGLLGGLEKYSPAIIRQRASSPKFQAHNTALVSAQQQQRFDSVRENPALWGRWVESAIGAHLLNATLSQQMTLTYWRHGNAEIDFVLQQGNRVIGIEIKSGTDQKNKGMEVFSKQYNPYKTLLVGNSGIPWEEFLELDPGELF
>NC_010831.1|WP_012475296.1|2068991_2070413_-|phosphomannomutase
MHLENISSVKFGTSGARGLVADMTDRVCYAFASAFLQSVADDAETVLLGHDLRPSSPAIASACLSAVKDAGSRVVYAGALPTPAIAFYAEKRQAPAVVVTGSHIPFDRNGIKFYRADGEISKADEQAMMSASLDVPETVQPAVLPQKDERAYQAYVARYLDFFGQGALDGMTVGVYEHSSVARDVLRDILEGLGAQVMSLGRTDTFVPIDTEAVREEDAHRARAWAKEHTFDAIVSTDGDGDRPLIGDEQGEWLRGDVVGILCAQFLRANVVVTPVSCNTAVEECGAFDRVIRTRIGSPYVIAGMEEAGSDGVVVGYEANGGFLLGSDAVRNGKALDALPTRDAVLPIVALLCMVRELGCKVSELTDSLPKRYTASDRLQDFPTELSRSIIAGLQAAPDEIGALMAPDAGAAAAVDSTDGLRVTFANGDIVHLRPSGNAPELRCYAEADTAERAGRLCRECLKRVNNVLGATC
>NC_010831.1|WP_012475298.1|2071374_2071764_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MSGRYLLDTNIVIDLFAEEQNVIAFLEEAQEVFLPVIVLGEMYFGALRSQRVKENIHRLTAFAEQSVVLDCDAKVARRYGEVKNMLRKRGRPIPENDIWIAAIALENNLTLVSRDDHFLEVDGLKLKAC
>NC_010831.1|WP_012475299.1|2071753_2071981_-|hypothetical-protein
MSSTIKNRVIEQIENLPADLQQQVLIFIKSLQIKEQKGVAGKQLLDFAGGITLNDLKLMQKEIEEGCEKVDLHEW
>NC_010831.1|WP_041471362.1|2072972_2073215_+|DUF4160-domain-containing-protein
MPTIKQLTNGFRFFFFSFDCNEPIHVHVSKETKICKFWLEPVALAKNSGFSSKELNSLFKIIQANSSLIKKCWYEHCDQY
>NC_010831.1|WP_012475300.1|2073192_2073465_+|DUF2442-domain-containing-protein
MNTATNIEPRIETVEITDDSITAGLEDGRMISVPLAWSWRLSEASVEQRNNYEIIGRGIGIHWPEIDEDISAEGMLYGIPAHKPRSKKSA
>NC_010831.1|WP_012475301.1|2073621_2074053_-|four-helix-bundle-protein
MEKKQNSGTNKNRVNELAKSFEDLIVWQKAHEFVLSVYRVTKDFPKEEIFGLVSQFRRASVSVPANIAEGFGKKSKLDKLRYLNISQGSLEECRYYVLLSKDLGYLKVSSEDMLNQVVDVSKLLTGYIKAIHAGLNKEENRSR
>NC_010831.1|WP_012475303.1|2075110_2075866_-|YdcF-family-protein
MLIFYKILPVFFLPIGLGILVLVIGALFRKWIVVWLGIVLLWVLSMPITGDWLMRQIEGVETRVVVESLEQGDAVVVLGGVLWQVPSVRYGEWGEAADRFEGGVEVFRAGKAPLLIFMGAKMPWMPDTRPEGEILAERAIRLGVPEEAVRVTERVGNTADEARAVKELLAGIERPEVILVTSAFHMNRASMLFRNAGIEVQPFPVDFRTSYYNELTLIDFLPSADGVENSEIAMKEMLGTLYYKVVASLGN

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Crispr_ID: NC_010831_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010831_6

2065193-2065286

Orphan

Consensus_repeat	Method
ATTTCACGGGGTGATCCGGCATCCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010831_6

>merge|NC_010831|6|2065193-2065286|CRISPRCasFinder
ATTTCACGGGGTGATCCGGCATCCATGCCCCCCGGAAAGTCATGCCGCCCTGTGAAATCCAAACATCTATTTCACGGGGTGATCCGGCATCCAT

>NC_010831|6|6|2065193-2065286|CRISPRCasFinder
ATTTCACGGGGTGATCCGGCATCCAT	GCCCCCCGGAAAGTCATGCCGCCCTGTGAAATCCAAACATCT
ATTTCACGGGGTGATCCGGCATCCAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010831.1\|WP_012475303.1\|2075110_2075866_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_010831.1\|WP_012475288.1\|2057981_2058860_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NC_010831.1\|WP_153303953.1\|2062650_2062803_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012475301.1\|2073621_2074053_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NC_010831.1\|WP_012475294.1\|2065663_2067094_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NC_010831.1\|WP_012475289.1\|2059376_2059868_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012475300.1\|2073192_2073465_+\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NC_010831.1\|WP_012475290.1\|2059945_2060635_-\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_153303951.1\|2057368_2057743_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NC_010831.1\|WP_012475295.1\|2067672_2068863_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_010831.1\|WP_012475292.1\|2061386_2062184_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|238816
NC_010831.1\|WP_012475296.1\|2068991_2070413_-\|phosphomannomutase	unknown	unknown	gnl\|CDD\|100090
NC_010831.1\|WP_012475304.1\|2075980_2077048_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|187557
NC_010831.1\|WP_012475299.1\|2071753_2071981_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378366
NC_010831.1\|WP_153303952.1\|2062366_2062636_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_041471360.1\|2057754_2057934_-\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_041471362.1\|2072972_2073215_+\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NC_010831.1\|WP_041471630.1\|2056711_2057311_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NC_010831.1\|WP_012475298.1\|2071374_2071764_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350320
NC_010831.1\|WP_012475293.1\|2063286_2065137_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729

Protein	Function_ID	Function_description	E-value
NC_010831.1\|WP_012475303.1\|2075110_2075866_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	8.18274e-31
NC_010831.1\|WP_012475288.1\|2057981_2058860_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_010831.1\|WP_012475299.1\|2071753_2071981_-\|hypothetical-protein	gnl\|CDD\|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	0.00330389
NC_010831.1\|WP_012475301.1\|2073621_2074053_-\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	2.0135e-54
NC_010831.1\|WP_012475296.1\|2068991_2070413_-\|phosphomannomutase	gnl\|CDD\|100090	cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_010831.1\|WP_012475292.1\|2061386_2062184_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|238816	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).	5.80362e-99
NC_010831.1\|WP_012475300.1\|2073192_2073465_+\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	1.05988e-20
NC_010831.1\|WP_153303951.1\|2057368_2057743_-\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	1.09908e-19
NC_010831.1\|WP_012475295.1\|2067672_2068863_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.86179e-36
NC_010831.1\|WP_012475294.1\|2065663_2067094_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_010831.1\|WP_012475304.1\|2075980_2077048_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|187557	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs. This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NC_010831.1\|WP_012475298.1\|2071374_2071764_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350320	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.09648e-61
NC_010831.1\|WP_041471362.1\|2072972_2073215_+\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	5.35443e-13
NC_010831.1\|WP_041471630.1\|2056711_2057311_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.5705e-102
NC_010831.1\|WP_012475293.1\|2063286_2065137_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0

>NC_010831.1|WP_012475293.1|2063286_2065137_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGKREASEVLLQGLRRLEYRGYDSAGIAVLNGSLSVVKQKGNVASLAETIVRSNGHISGATLGIGHTRWATHGDPSDRNAHPHMNEAGDIALIHNGIIENHTALRVELGKHGYSFSSDTDSEVLVHLIDHLWAQVPFLDFESAVRQALSIIDGAYGICVISSREPETMIVARKGSPLVIGIGDGEYFVASDAAPLVEYTRKVVYLADDEMAVMKRDGYRVKTIDNVEQDKALSELDFELGEIEKGGYEHFMLKEIFEQPKVMQDVMRGRVRLEEGRIQLGGVADHLDELRAAKRIVICACGTSWHAGLIGEYLIEEFANIPVEVDYASEFRYRNPIIGPGDVMLVISQSGETADTLAALQLAREKGATVIGICNVVGSTIARQTDYGIYTHAGPEIGVASTKAFSAQVIVLTMLALALSKARTMSDAEVMEALQSLGNLPDQAGRILENNEQIMEIAGHYKDARNFLYLGRGYNFPVALEGALKLKEISYIHAEGYPAAEMKHGPIALIDEAMPVVVIATKTKDETYKKVLSNIEEVRTRKGRVIAIATEGDEEIEGLVDHVIYVPEAVQFIMPLLTVIPLQLLSYYIAKMRECDVDRPRNLAKSVTVE
>NC_010831.1|WP_153303953.1|2062650_2062803_+|hypothetical-protein
MLRFHGAIRHPCPPESHAGLDPASMRFYRRRMDSRVKHGNDRRWGEWIPV
>NC_010831.1|WP_153303952.1|2062366_2062636_+|hypothetical-protein
MTGERKNGFPCKTCEIDAQISRGDPASMPPGKSCRPVKSKHLFHGVIRHPCPLDSHAGLDPASMRFYRRRMDSRVKHGNDRRWGEWIPV
>NC_010831.1|WP_012475292.1|2061386_2062184_-|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MVFEKELLMAVRAALAAGRLIMDVYESEDFEIEKKGDDSPLTRADRAAHESIVHALESTGLPVLSEEGKSIAYEERKAWKRYWLVDPLDGTKEFISRNGEFTVNIALIDEGVPVLGVVYVPVLDELFFGSTDEGGYYIPVANGSSGSLDRLLERAYALPLAKNERSYRVVGSRSHMNDLTTAFIDSVRDEYPDLEIVQRGSSLKICMVAAGDADIYPRFGPTMEWDTAAGHAVVRAAGKSMIEAGSGKELRYNKEELLNPYFIVW
>NC_010831.1|WP_012475290.1|2059945_2060635_-|hypothetical-protein
MTRVCKVSRTARSAAVMMMALIMLFQVNEVYGKSKKNKIDDKHFAAPNASEDVQRTVKWIGKNYNNQLLPFGVIDKQNAVIHLFSNTGEAVASGPVLLGISKSDRINPKTLKKRLSSIGPSERVTPAGRFQVVLGPDHRGKQVLWIDSQFAIALHPVVNVPGQNRRTRLKTATASDNRITWGCINVQPTLYKNVISSLFKRQGFVYILPEETPVEDFIRQVSLVSPVKK
>NC_010831.1|WP_012475289.1|2059376_2059868_+|hypothetical-protein
MSENNKEHRVNFALVNIKTDQLDIHPETFDENKQVSIQAGINFGVDKQKHLIKVLFNHNFVHQEIEENEKKKITPIIELAVSCVFALDKESWELLEKEEEKVFILPKGLASHFASMTAGTARGILHNETEHTDYNKFIIPANNVGDVIPNNVQIPLEKPSSQN
>NC_010831.1|WP_012475288.1|2057981_2058860_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPVTKGISKQLLPIYDKPMIYYPLSTLMLAGIRDVLVISTPDDLPLFQKVLGNGRDWGIRLSYVEQPSPDGLAQAFLLGEEFIGDDDVCLILGDNIFFGYGFTGMLQRAVQSVSEERAATIFGYYVNDPERYGVAEFDDDGNVLSIEEKPSEPKSNYAVVGLYFYTNDVIEVAKNVKPSARGELEITSVNEEYLRRRRLRMSIMGRGFAWLDTGTHESYQEAGNFIETVEKRQGLKIACPEEIAWRSGWIDDGQLQELAKPLMKSQYGEYLLQLLKRS
>NC_010831.1|WP_041471360.1|2057754_2057934_-|hypothetical-protein
MEEGRKKAKVEEGRKKVKVKSEKWRREGKRQKAKGRRQRQRSKVEEESQKRKGERYCKQ
>NC_010831.1|WP_153303951.1|2057368_2057743_-|four-helix-bundle-protein
MMKKDLAIRLFDFAVSAINLIRKFPKSPEYQVISYQLCKSATSSGANYEEAQAGSSKQDFIYKTEISLREMKESNYWLRIIREIKEESLQERERLNELIGESEELSKILAAIIVRSKENVEASR
>NC_010831.1|WP_041471630.1|2056711_2057311_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MKYTAAAIPDVLVFEPRVFGDSRGYFFESFRKDILQEHVGKVDFVQDNQSKSGYGVLRGLHFQKPPFTQSKLVRVIAGAVLDVAVDIREGSPWYGRHVAVKLDSERNNMLWIPQGFAHGFIVLSKEAIFSYKCDNYYAPDYDAGIRWNDKALGIDWTLPEEDIQVSDKDASLPFLKEAYHFSYDDFRQEKVYPRNGGND
>NC_010831.1|WP_012475294.1|2065663_2067094_-|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MLIPVILSGGSGTRLWPLSRAQYPKQLLPLAAEQTMLQETVVRLRNIPDTGPVYCVCNKDHRFMVAEQLRQVTDTVGDIILEPVGRNTAPAAAVAALRIQEQFPEAAMLLLPADHVIQDVDAFAKAVALGSKAANDGALVTFGIVPDAPETGYGYIRATVEKSGENRVFPVEEFVEKPDRETAETYVASGEYFWNSGMFLFKVSTYLEELEAHAPAMLQACRLALENAKSDLDFLRLDKEAFTACPSDSIDYAVMEKTTGASVVPLDAGWSDVGAWSALWGVKERDDCGNVAKGDVLLHDVKDSYIHASSRMVAAVGVDDHVIVETADAVLVASKDRVQDVKAIVERLKREGRDEAVTHVRVNRPWGSYETVDRCDRFLVKRIIVKPGSALSLQKHYHRAEHWVVVKGTARITVDQDVVILREDQSTYIPIGTRHRLENPGKIPLELIEVQTGSYLGEDDIERFDDKYGRAEADSG
>NC_010831.1|WP_012475295.1|2067672_2068863_+|ATP-binding-protein
MLIERDQKGVLGKRIEEEPRRFIQVIYGPRQVGKTTLAQQLVESTRLPVHFVSADLVAAGQSTWISQQWETARLKLKKSSQKEGIIIIDEIQKIDNWSETVKKEWDSDSLHQVQLKAVLLGSSRLLLQQGLTESLAGRFETTYLGHWSYGEMKKAFDFSHEQFVWFGGYPGAASLIHDEKRWAGYITDSLIETSISRDILMLTRVDKPALMKNLFELGCSYSGQILSFNKIMGQLHDAGNTTTLAHYLRLLDTAGLLGGLEKYSPAIIRQRASSPKFQAHNTALVSAQQQQRFDSVRENPALWGRWVESAIGAHLLNATLSQQMTLTYWRHGNAEIDFVLQQGNRVIGIEIKSGTDQKNKGMEVFSKQYNPYKTLLVGNSGIPWEEFLELDPGELF
>NC_010831.1|WP_012475296.1|2068991_2070413_-|phosphomannomutase
MHLENISSVKFGTSGARGLVADMTDRVCYAFASAFLQSVADDAETVLLGHDLRPSSPAIASACLSAVKDAGSRVVYAGALPTPAIAFYAEKRQAPAVVVTGSHIPFDRNGIKFYRADGEISKADEQAMMSASLDVPETVQPAVLPQKDERAYQAYVARYLDFFGQGALDGMTVGVYEHSSVARDVLRDILEGLGAQVMSLGRTDTFVPIDTEAVREEDAHRARAWAKEHTFDAIVSTDGDGDRPLIGDEQGEWLRGDVVGILCAQFLRANVVVTPVSCNTAVEECGAFDRVIRTRIGSPYVIAGMEEAGSDGVVVGYEANGGFLLGSDAVRNGKALDALPTRDAVLPIVALLCMVRELGCKVSELTDSLPKRYTASDRLQDFPTELSRSIIAGLQAAPDEIGALMAPDAGAAAAVDSTDGLRVTFANGDIVHLRPSGNAPELRCYAEADTAERAGRLCRECLKRVNNVLGATC
>NC_010831.1|WP_012475298.1|2071374_2071764_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MSGRYLLDTNIVIDLFAEEQNVIAFLEEAQEVFLPVIVLGEMYFGALRSQRVKENIHRLTAFAEQSVVLDCDAKVARRYGEVKNMLRKRGRPIPENDIWIAAIALENNLTLVSRDDHFLEVDGLKLKAC
>NC_010831.1|WP_012475299.1|2071753_2071981_-|hypothetical-protein
MSSTIKNRVIEQIENLPADLQQQVLIFIKSLQIKEQKGVAGKQLLDFAGGITLNDLKLMQKEIEEGCEKVDLHEW
>NC_010831.1|WP_041471362.1|2072972_2073215_+|DUF4160-domain-containing-protein
MPTIKQLTNGFRFFFFSFDCNEPIHVHVSKETKICKFWLEPVALAKNSGFSSKELNSLFKIIQANSSLIKKCWYEHCDQY
>NC_010831.1|WP_012475300.1|2073192_2073465_+|DUF2442-domain-containing-protein
MNTATNIEPRIETVEITDDSITAGLEDGRMISVPLAWSWRLSEASVEQRNNYEIIGRGIGIHWPEIDEDISAEGMLYGIPAHKPRSKKSA
>NC_010831.1|WP_012475301.1|2073621_2074053_-|four-helix-bundle-protein
MEKKQNSGTNKNRVNELAKSFEDLIVWQKAHEFVLSVYRVTKDFPKEEIFGLVSQFRRASVSVPANIAEGFGKKSKLDKLRYLNISQGSLEECRYYVLLSKDLGYLKVSSEDMLNQVVDVSKLLTGYIKAIHAGLNKEENRSR
>NC_010831.1|WP_012475303.1|2075110_2075866_-|YdcF-family-protein
MLIFYKILPVFFLPIGLGILVLVIGALFRKWIVVWLGIVLLWVLSMPITGDWLMRQIEGVETRVVVESLEQGDAVVVLGGVLWQVPSVRYGEWGEAADRFEGGVEVFRAGKAPLLIFMGAKMPWMPDTRPEGEILAERAIRLGVPEEAVRVTERVGNTADEARAVKELLAGIERPEVILVTSAFHMNRASMLFRNAGIEVQPFPVDFRTSYYNELTLIDFLPSADGVENSEIAMKEMLGTLYYKVVASLGN
>NC_010831.1|WP_012475304.1|2075980_2077048_-|dTDP-glucose-4,6-dehydratase
MHILITGGAGFIGSHVVRHFVDTYPQYTITNLDKLTYAGNLENLRDVEDRSNYRFVKGDITDGDAMIILFAQERFDGVIHLAAESHVDRSIANPTEFVVTNVLGTVNLLNASRALWKDDFGGKRFYHVSTDEVYGALGGEGMFTEETSYDPHSPYSASKASSDHFVRAYHDTYGLPVVISNCSNNYGSFQFPEKLIPLFINNICNNKPLPVYGKGENIRDWLWVVDHASAIDAIYHKGKQGETYNIGGNNEWTNIALIRLLCSIMDRKLGRSEGESEKLITYVTDRAGHDFRYAIDSSKLQRELGWTPSLQFEEGLEKTVDWYLQNGEWLENVTSGAYQQYYEEMYEKGEMNNDD

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Crispr_ID: NC_010831_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010831_7

2072215-2072314

Orphan

Consensus_repeat	Method
TAGCTGAATGGCCCAAAGAAGACCAGTGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010831_7

>merge|NC_010831|7|2072215-2072314|CRISPRCasFinder
TAGCTGAATGGCCCAAAGAAGACCAGTGACCAGGAAAAAGGCTAAATAGCTGAATGGCTGGTTAGCTGGTTAGCTGAATAGCCCAAAGAAGACCAGTGAC

>NC_010831|7|7|2072215-2072314|CRISPRCasFinder
TAGCTGAATGGCCCAAAGAAGACCAGTGAC	CAGGAAAAAGGCTAAATAGCTGAATGGCTGGTTAGCTGGT
TAGCTGAATAGCCCAAAGAAGACCAGTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010831.1\|WP_012475305.1\|2077274_2077412_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274132
NC_010831.1\|WP_012475303.1\|2075110_2075866_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_010831.1\|WP_012475299.1\|2071753_2071981_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378366
NC_010831.1\|WP_012475301.1\|2073621_2074053_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|319869
NC_010831.1\|WP_012475307.1\|2078328_2079225_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	unknown	unknown	gnl\|CDD\|130274
NC_010831.1\|WP_012475294.1\|2065663_2067094_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NC_010831.1\|WP_012475292.1\|2061386_2062184_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|238816
NC_010831.1\|WP_012475308.1\|2080568_2081561_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187549
NC_010831.1\|WP_012475290.1\|2059945_2060635_-\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012475300.1\|2073192_2073465_+\|DUF2442-domain-containing-protein	unknown	unknown	gnl\|CDD\|378424
NC_010831.1\|WP_012475295.1\|2067672_2068863_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NC_010831.1\|WP_153303954.1\|2079326_2080459_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_010831.1\|WP_012475296.1\|2068991_2070413_-\|phosphomannomutase	unknown	unknown	gnl\|CDD\|100090
NC_010831.1\|WP_012475304.1\|2075980_2077048_-\|dTDP-glucose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|187557
NC_010831.1\|WP_153303952.1\|2062366_2062636_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012475298.1\|2071374_2071764_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350320
NC_010831.1\|WP_041471362.1\|2072972_2073215_+\|DUF4160-domain-containing-protein	unknown	unknown	gnl\|CDD\|379344
NC_010831.1\|WP_153303953.1\|2062650_2062803_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012475306.1\|2077680_2078274_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	unknown	unknown	gnl\|CDD\|376414
NC_010831.1\|WP_012475293.1\|2063286_2065137_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729

Protein	Function_ID	Function_description	E-value
NC_010831.1\|WP_012475305.1\|2077274_2077412_-\|hypothetical-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	0.00021364
NC_010831.1\|WP_012475303.1\|2075110_2075866_-\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	8.18274e-31
NC_010831.1\|WP_012475299.1\|2071753_2071981_-\|hypothetical-protein	gnl\|CDD\|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	0.00330389
NC_010831.1\|WP_012475301.1\|2073621_2074053_-\|four-helix-bundle-protein	gnl\|CDD\|319869	cd16377, 23S_rRNA_IVP_like, 23S rRNA-intervening sequence protein and similar proteins. A family of functionally uncharacterized bacterial proteins, some of which are encoded by an atypically large intervening sequence present within some 23S rRNA genes. The distantly related bAvd protein, which also forms a homopentamer of four-helix bundles, has been suggested to interact with nucleic acids and a reverse transcriptase.	2.0135e-54
NC_010831.1\|WP_012475307.1\|2078328_2079225_-\|glucose-1-phosphate-thymidylyltransferase-RfbA	gnl\|CDD\|130274	TIGR01207, Glucose-1-phosphate_thymidylyltransferase_1, glucose-1-phosphate thymidylyltransferase, short form. Alternate name: dTDP-D-glucose synthase homotetramer This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_010831.1\|WP_012475294.1\|2065663_2067094_-\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NC_010831.1\|WP_012475292.1\|2061386_2062184_-\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|238816	cd01638, CysQ, CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).	5.80362e-99
NC_010831.1\|WP_012475308.1\|2080568_2081561_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187549	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs. Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.00076e-68
NC_010831.1\|WP_012475295.1\|2067672_2068863_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.86179e-36
NC_010831.1\|WP_153303954.1\|2079326_2080459_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.15101e-29
NC_010831.1\|WP_012475296.1\|2068991_2070413_-\|phosphomannomutase	gnl\|CDD\|100090	cd03088, ManB, ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NC_010831.1\|WP_012475304.1\|2075980_2077048_-\|dTDP-glucose-4,6-dehydratase	gnl\|CDD\|187557	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs. This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NC_010831.1\|WP_012475298.1\|2071374_2071764_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350320	cd18753, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	5.09648e-61
NC_010831.1\|WP_041471362.1\|2072972_2073215_+\|DUF4160-domain-containing-protein	gnl\|CDD\|379344	pfam13711, DUF4160, Domain of unknown function (DUF4160).	5.35443e-13
NC_010831.1\|WP_012475300.1\|2073192_2073465_+\|DUF2442-domain-containing-protein	gnl\|CDD\|378424	pfam10387, DUF2442, Protein of unknown function (DUF2442). This family of bacterial and fungal proteins has several members annotated as being putative molybdopterin-guanine dinucleotide biosynthesis protein A; however this could not be verified. Hence the function is not known. This family also includes the DUF3532 that was found to be related and was merged into this family. Members of this family also fall into the NE0471 N-terminal domain-like superfamily, a family of proteins with a unique fold in SCOP:143880.	1.05988e-20
NC_010831.1\|WP_012475306.1\|2077680_2078274_-\|dTDP-4-dehydrorhamnose-3,5-epimerase	gnl\|CDD\|376414	pfam00908, dTDP_sugar_isom, dTDP-4-dehydrorhamnose 3,5-epimerase. This family catalyze the isomerisation of dTDP-4-dehydro-6-deoxy -D-glucose with dTDP-4-dehydro-6-deoxy-L-mannose. The EC number of this enzyme is 5.1.3.13.	2.1296e-99
NC_010831.1\|WP_012475293.1\|2063286_2065137_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0

>NC_010831.1|WP_012475299.1|2071753_2071981_-|hypothetical-protein
MSSTIKNRVIEQIENLPADLQQQVLIFIKSLQIKEQKGVAGKQLLDFAGGITLNDLKLMQKEIEEGCEKVDLHEW
>NC_010831.1|WP_012475298.1|2071374_2071764_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MSGRYLLDTNIVIDLFAEEQNVIAFLEEAQEVFLPVIVLGEMYFGALRSQRVKENIHRLTAFAEQSVVLDCDAKVARRYGEVKNMLRKRGRPIPENDIWIAAIALENNLTLVSRDDHFLEVDGLKLKAC
>NC_010831.1|WP_012475296.1|2068991_2070413_-|phosphomannomutase
MHLENISSVKFGTSGARGLVADMTDRVCYAFASAFLQSVADDAETVLLGHDLRPSSPAIASACLSAVKDAGSRVVYAGALPTPAIAFYAEKRQAPAVVVTGSHIPFDRNGIKFYRADGEISKADEQAMMSASLDVPETVQPAVLPQKDERAYQAYVARYLDFFGQGALDGMTVGVYEHSSVARDVLRDILEGLGAQVMSLGRTDTFVPIDTEAVREEDAHRARAWAKEHTFDAIVSTDGDGDRPLIGDEQGEWLRGDVVGILCAQFLRANVVVTPVSCNTAVEECGAFDRVIRTRIGSPYVIAGMEEAGSDGVVVGYEANGGFLLGSDAVRNGKALDALPTRDAVLPIVALLCMVRELGCKVSELTDSLPKRYTASDRLQDFPTELSRSIIAGLQAAPDEIGALMAPDAGAAAAVDSTDGLRVTFANGDIVHLRPSGNAPELRCYAEADTAERAGRLCRECLKRVNNVLGATC
>NC_010831.1|WP_012475295.1|2067672_2068863_+|ATP-binding-protein
MLIERDQKGVLGKRIEEEPRRFIQVIYGPRQVGKTTLAQQLVESTRLPVHFVSADLVAAGQSTWISQQWETARLKLKKSSQKEGIIIIDEIQKIDNWSETVKKEWDSDSLHQVQLKAVLLGSSRLLLQQGLTESLAGRFETTYLGHWSYGEMKKAFDFSHEQFVWFGGYPGAASLIHDEKRWAGYITDSLIETSISRDILMLTRVDKPALMKNLFELGCSYSGQILSFNKIMGQLHDAGNTTTLAHYLRLLDTAGLLGGLEKYSPAIIRQRASSPKFQAHNTALVSAQQQQRFDSVRENPALWGRWVESAIGAHLLNATLSQQMTLTYWRHGNAEIDFVLQQGNRVIGIEIKSGTDQKNKGMEVFSKQYNPYKTLLVGNSGIPWEEFLELDPGELF
>NC_010831.1|WP_012475294.1|2065663_2067094_-|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MLIPVILSGGSGTRLWPLSRAQYPKQLLPLAAEQTMLQETVVRLRNIPDTGPVYCVCNKDHRFMVAEQLRQVTDTVGDIILEPVGRNTAPAAAVAALRIQEQFPEAAMLLLPADHVIQDVDAFAKAVALGSKAANDGALVTFGIVPDAPETGYGYIRATVEKSGENRVFPVEEFVEKPDRETAETYVASGEYFWNSGMFLFKVSTYLEELEAHAPAMLQACRLALENAKSDLDFLRLDKEAFTACPSDSIDYAVMEKTTGASVVPLDAGWSDVGAWSALWGVKERDDCGNVAKGDVLLHDVKDSYIHASSRMVAAVGVDDHVIVETADAVLVASKDRVQDVKAIVERLKREGRDEAVTHVRVNRPWGSYETVDRCDRFLVKRIIVKPGSALSLQKHYHRAEHWVVVKGTARITVDQDVVILREDQSTYIPIGTRHRLENPGKIPLELIEVQTGSYLGEDDIERFDDKYGRAEADSG
>NC_010831.1|WP_012475293.1|2063286_2065137_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGKREASEVLLQGLRRLEYRGYDSAGIAVLNGSLSVVKQKGNVASLAETIVRSNGHISGATLGIGHTRWATHGDPSDRNAHPHMNEAGDIALIHNGIIENHTALRVELGKHGYSFSSDTDSEVLVHLIDHLWAQVPFLDFESAVRQALSIIDGAYGICVISSREPETMIVARKGSPLVIGIGDGEYFVASDAAPLVEYTRKVVYLADDEMAVMKRDGYRVKTIDNVEQDKALSELDFELGEIEKGGYEHFMLKEIFEQPKVMQDVMRGRVRLEEGRIQLGGVADHLDELRAAKRIVICACGTSWHAGLIGEYLIEEFANIPVEVDYASEFRYRNPIIGPGDVMLVISQSGETADTLAALQLAREKGATVIGICNVVGSTIARQTDYGIYTHAGPEIGVASTKAFSAQVIVLTMLALALSKARTMSDAEVMEALQSLGNLPDQAGRILENNEQIMEIAGHYKDARNFLYLGRGYNFPVALEGALKLKEISYIHAEGYPAAEMKHGPIALIDEAMPVVVIATKTKDETYKKVLSNIEEVRTRKGRVIAIATEGDEEIEGLVDHVIYVPEAVQFIMPLLTVIPLQLLSYYIAKMRECDVDRPRNLAKSVTVE
>NC_010831.1|WP_153303953.1|2062650_2062803_+|hypothetical-protein
MLRFHGAIRHPCPPESHAGLDPASMRFYRRRMDSRVKHGNDRRWGEWIPV
>NC_010831.1|WP_153303952.1|2062366_2062636_+|hypothetical-protein
MTGERKNGFPCKTCEIDAQISRGDPASMPPGKSCRPVKSKHLFHGVIRHPCPLDSHAGLDPASMRFYRRRMDSRVKHGNDRRWGEWIPV
>NC_010831.1|WP_012475292.1|2061386_2062184_-|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MVFEKELLMAVRAALAAGRLIMDVYESEDFEIEKKGDDSPLTRADRAAHESIVHALESTGLPVLSEEGKSIAYEERKAWKRYWLVDPLDGTKEFISRNGEFTVNIALIDEGVPVLGVVYVPVLDELFFGSTDEGGYYIPVANGSSGSLDRLLERAYALPLAKNERSYRVVGSRSHMNDLTTAFIDSVRDEYPDLEIVQRGSSLKICMVAAGDADIYPRFGPTMEWDTAAGHAVVRAAGKSMIEAGSGKELRYNKEELLNPYFIVW
>NC_010831.1|WP_012475290.1|2059945_2060635_-|hypothetical-protein
MTRVCKVSRTARSAAVMMMALIMLFQVNEVYGKSKKNKIDDKHFAAPNASEDVQRTVKWIGKNYNNQLLPFGVIDKQNAVIHLFSNTGEAVASGPVLLGISKSDRINPKTLKKRLSSIGPSERVTPAGRFQVVLGPDHRGKQVLWIDSQFAIALHPVVNVPGQNRRTRLKTATASDNRITWGCINVQPTLYKNVISSLFKRQGFVYILPEETPVEDFIRQVSLVSPVKK
>NC_010831.1|WP_041471362.1|2072972_2073215_+|DUF4160-domain-containing-protein
MPTIKQLTNGFRFFFFSFDCNEPIHVHVSKETKICKFWLEPVALAKNSGFSSKELNSLFKIIQANSSLIKKCWYEHCDQY
>NC_010831.1|WP_012475300.1|2073192_2073465_+|DUF2442-domain-containing-protein
MNTATNIEPRIETVEITDDSITAGLEDGRMISVPLAWSWRLSEASVEQRNNYEIIGRGIGIHWPEIDEDISAEGMLYGIPAHKPRSKKSA
>NC_010831.1|WP_012475301.1|2073621_2074053_-|four-helix-bundle-protein
MEKKQNSGTNKNRVNELAKSFEDLIVWQKAHEFVLSVYRVTKDFPKEEIFGLVSQFRRASVSVPANIAEGFGKKSKLDKLRYLNISQGSLEECRYYVLLSKDLGYLKVSSEDMLNQVVDVSKLLTGYIKAIHAGLNKEENRSR
>NC_010831.1|WP_012475303.1|2075110_2075866_-|YdcF-family-protein
MLIFYKILPVFFLPIGLGILVLVIGALFRKWIVVWLGIVLLWVLSMPITGDWLMRQIEGVETRVVVESLEQGDAVVVLGGVLWQVPSVRYGEWGEAADRFEGGVEVFRAGKAPLLIFMGAKMPWMPDTRPEGEILAERAIRLGVPEEAVRVTERVGNTADEARAVKELLAGIERPEVILVTSAFHMNRASMLFRNAGIEVQPFPVDFRTSYYNELTLIDFLPSADGVENSEIAMKEMLGTLYYKVVASLGN
>NC_010831.1|WP_012475304.1|2075980_2077048_-|dTDP-glucose-4,6-dehydratase
MHILITGGAGFIGSHVVRHFVDTYPQYTITNLDKLTYAGNLENLRDVEDRSNYRFVKGDITDGDAMIILFAQERFDGVIHLAAESHVDRSIANPTEFVVTNVLGTVNLLNASRALWKDDFGGKRFYHVSTDEVYGALGGEGMFTEETSYDPHSPYSASKASSDHFVRAYHDTYGLPVVISNCSNNYGSFQFPEKLIPLFINNICNNKPLPVYGKGENIRDWLWVVDHASAIDAIYHKGKQGETYNIGGNNEWTNIALIRLLCSIMDRKLGRSEGESEKLITYVTDRAGHDFRYAIDSSKLQRELGWTPSLQFEEGLEKTVDWYLQNGEWLENVTSGAYQQYYEEMYEKGEMNNDD
>NC_010831.1|WP_012475305.1|2077274_2077412_-|hypothetical-protein
MMEVACQLMISVDLKLADEDQHQLRKQEIFELSNKINALHRRCLE
>NC_010831.1|WP_012475306.1|2077680_2078274_-|dTDP-4-dehydrorhamnose-3,5-epimerase
MQVISKSIPDVLEFVPKIYGDERGYFFESFRKDIVEEHVGKVDFVQDNQSKSGYGVLRGLHFQKPPFTQSKLVRVIEGSVLDVAVDIREGSPWYGQYVAVKLDSQTNNMLWVPQGFAHGFIVLSKEAIFSYKCDNYYAPEYDAGIKWNDPDIGIDWGIAEEQVQVSEKDAGQPFLKDAFHFSYNDFKKEKVYHRRDG
>NC_010831.1|WP_012475307.1|2078328_2079225_-|glucose-1-phosphate-thymidylyltransferase-RfbA
MKGIILAGGSGTRLYPATKGISKQLLPIYDKPMIYYPLSTLMLAGIREVLVISTPDDLPLFRKVLGNGCDWGINLSYVEQPSPDGLAQAFLLGEEFIGDDDVCLILGDNIFFGYGFTGMLQRAVQSVSEDRAANIFGYYVNDPERYGVAEFDEAGNVLSIEEKPSEPKSNYAVVGLYFYTNDVVDVAKNVKPSARGELEITSVNEEYLRREQLKMSIMGRGFAWLDTGTHESFQEAGNFIETVEKRQGLKIACPEEIAWRNKWIDDSRLEQLAAPLMKSQYGEYLKGLLSHKQELLHV
>NC_010831.1|WP_153303954.1|2079326_2080459_+|IS630-family-transposase
MKKYKVTLTQEEREELEAISSKGKHAAQTVLNALILLACDEGRFQKQRSINEEISRVLNVSMKTIDRVKKRFVEEGFEAVLTRKPSTHQYQSKVDGDLEAHLIALCCSDPPAGYKRWSLRLLADKAVEMEYVDRISHETVRQGFKKNVLKPWKTEGWVIPPVQNGDFVAQMEVVLDTYKYPYDPLYPLLCMDESPKQLIAETRLPVPPKPGKLARYDYEYSRKGVCNIFIATEPLMGKRIVKVTPRRTKQDWAKFLVDIERHYRHAEKITLVMDNLNTHKPGSLYETFNPREAKALLDRFEFVYTPKHGSWLNMAEIELRILSNQCLNRRIDSIMEVRREVGAWEKERNNKEAVINWRFTTDDARIKLKRLYPSVSD
>NC_010831.1|WP_012475308.1|2080568_2081561_-|NAD-dependent-epimerase/dehydratase-family-protein
MLNRVLLIGASGFVGTRLIDEIGEERCVNLDKQHSSRYDNITVIQDIRNEGIDGAISHQPSAVVLLAAEHRDDVSPVSLYYDVNVQGTMNVLDAMDKKGIKSIVFTSSVAVYGLNKENPNETHRADPFNHYGKSKWQAEEVLREWYQKDPENRSLSIIRPTVIFGEANRGNVYNLLRQIASGKFLMIGKGENKKSMAYVGNVVAFIKYLIDNDRPGYRVFNYVDKPDFNMNELVSQVRSDLKQNGRLIRIPEVVGMLGGFGFDILAKVTGKKLPISSVRVKKFCATTQFSADKLDVSGFQRPFTLEEGLERTLRYEFIENHDDKPVFFTE

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Crispr_ID: NC_010831_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010831_8

2260286-2260389

Orphan

Consensus_repeat	Method
GGGAAATGACTATTGACTATTGAATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010831_8

>merge|NC_010831|8|2260286-2260389|CRISPRCasFinder
AGGTAGTGGGAAATGACTATTGACTATTGAATAATGGAAGATGGGGAGAGTTCTCAGTTCTGAGTGCTGAGCGATGAGGGGAAATGACTATTGACAATTGAATA

>NC_010831|8|8|2260286-2260389|CRISPRCasFinder
AGGTAGTGGGAAATGACTATTGACTA	TTGAATAATGGAAGATGGGGAGAGTTCTCAGTTCTGAGTGCTGAGCGATGAG
GGGAAATGACTATTGACAATTGAATA

Protein	Signature genes	Signature genes Name	Protein_function
NC_010831.1\|WP_012475474.1\|2269734_2270412_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227760
NC_010831.1\|WP_012475458.1\|2250129_2251206_-\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
NC_010831.1\|WP_012475476.1\|2271279_2271942_-\|YukJ-family-protein	unknown	unknown	gnl\|CDD\|378365
NC_010831.1\|WP_012475467.1\|2259203_2260283_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NC_010831.1\|WP_012475478.1\|2273179_2275186_+\|transketolase	unknown	unknown	gnl\|CDD\|223100
NC_010831.1\|WP_153304022.1\|2265647_2267339_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|225536
NC_010831.1\|WP_012475468.1\|2260719_2261394_+\|phospholipase	unknown	unknown	gnl\|CDD\|223477
NC_010831.1\|WP_012475459.1\|2251468_2251969_-\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012475461.1\|2252813_2253401_-\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012475466.1\|2257528_2259202_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NC_010831.1\|WP_153303965.1\|2268733_2269633_+\|DUF4412-domain-containing-protein	unknown	unknown	gnl\|CDD\|373032
NC_010831.1\|WP_012475477.1\|2272095_2272995_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|225803
NC_010831.1\|WP_012475472.1\|2267587_2268268_-\|murein-L,D-transpeptidase-catalytic-domain-family-protein	unknown	unknown	gnl\|CDD\|379310
NC_010831.1\|WP_012475462.1\|2253520_2254399_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NC_010831.1\|WP_012475460.1\|2251970_2252717_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_010831.1\|WP_012475469.1\|2261475_2265159_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NC_010831.1\|WP_012475464.1\|2255409_2256009_+\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|376746
NC_010831.1\|WP_153304023.1\|2270645_2271074_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NC_010831.1\|WP_012475465.1\|2256081_2257464_+\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
NC_010831.1\|WP_012475463.1\|2254432_2255230_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293

Protein	Function_ID	Function_description	E-value
NC_010831.1\|WP_012475474.1\|2269734_2270412_-\|hypothetical-protein	gnl\|CDD\|227760	COG5473, COG5473, Predicted integral membrane protein [Function unknown].	6.65987e-07
NC_010831.1\|WP_012475468.1\|2260719_2261394_+\|phospholipase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	6.29074e-32
NC_010831.1\|WP_012475476.1\|2271279_2271942_-\|YukJ-family-protein	gnl\|CDD\|378365	pfam10042, DUF2278, Uncharacterized conserved protein (DUF2278). Members of this family of hypothetical bacterial proteins have no known function.	3.19077e-72
NC_010831.1\|WP_012475467.1\|2259203_2260283_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	3.64247e-170
NC_010831.1\|WP_153304023.1\|2270645_2271074_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	2.26036e-16
NC_010831.1\|WP_153304022.1\|2265647_2267339_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|225536	COG2989, COG2989, Uncharacterized protein conserved in bacteria [Function unknown].	6.90388e-130
NC_010831.1\|WP_012475478.1\|2273179_2275186_+\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NC_010831.1\|WP_153303965.1\|2268733_2269633_+\|DUF4412-domain-containing-protein	gnl\|CDD\|373032	pfam14371, DUF4412, Domain of unknown function (DUF4412). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is typically between 75 and 104 amino acids in length.	6.42894e-76
NC_010831.1\|WP_012475466.1\|2257528_2259202_+\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	3.4317e-55
NC_010831.1\|WP_012475458.1\|2250129_2251206_-\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
NC_010831.1\|WP_012475477.1\|2272095_2272995_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|225803	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.37027e-98
NC_010831.1\|WP_012475472.1\|2267587_2268268_-\|murein-L,D-transpeptidase-catalytic-domain-family-protein	gnl\|CDD\|379310	pfam13645, YkuD_2, L,D-transpeptidase catalytic domain. This family is related to pfam03734.	8.977e-96
NC_010831.1\|WP_012475462.1\|2253520_2254399_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	1.84376e-79
NC_010831.1\|WP_012475460.1\|2251970_2252717_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	3.57951e-53
NC_010831.1\|WP_012475469.1\|2261475_2265159_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NC_010831.1\|WP_012475464.1\|2255409_2256009_+\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|376746	pfam02245, Pur_DNA_glyco, Methylpurine-DNA glycosylase (MPG). Methylpurine-DNA glycosylase is a base excision-repair protein. It is responsible for the hydrolysis of the deoxyribose N-glycosidic bond, excising 3-methyladenine and 3-methylguanine from damaged DNA.	1.14379e-91
NC_010831.1\|WP_012475465.1\|2256081_2257464_+\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	1.07764e-150
NC_010831.1\|WP_012475463.1\|2254432_2255230_-\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	9.91229e-95

>NC_010831.1|WP_012475467.1|2259203_2260283_+|tRNA-2-thiouridine(34)-synthase-MnmA
MMKDKEHVIVGISGGVDSAVAACILIENGYRVTGLHIKVLDHSDDSLHLEKSPLIISDRKEFRFPVFSLNLSGSFRRDVIDYFLQDYLSGRTPNPCMVCNKLIKWKGLLKGADLLQATLVATGHYARIDCGREKCRLLKGTDSQKDQSYFLWMLSSEELSKTLLPVGNLTKQEVRELARRFGVRAAEKKESQEICFVPDNDYREVVKSSRPGLAEKLTGGEIIDTEGKVIGHHAGYPFYTIGQRKGLGISSPEPLYVNRLDPEKNRIRVGGKAMLQCRKLIAGQMNWTGISPPETSTRAAARIRYRDTGEACTIVPVEKERFEVIFDKPKQSVTPGQAVVFYRDDEVIGGGIIVEAISE
>NC_010831.1|WP_012475466.1|2257528_2259202_+|electron-transfer-flavoprotein-ubiquinone-oxidoreductase
MQAERESLDFDIVFVGAGPANLTAAIDLQRLINRHNASATTILEPEIAILEKGRYVGAHLLSGAILDPAVFNQFMPDFLQRGCPLEAEVTRDSAWFLFGQKKIQIPYLPEPFRNRGNRLVSLSKLGAWLAGEAESLGINIFDNTAAVEPVIENGRVTGVITDDKGIDKAGNAKSGAEPGMRLNAKTVVVGEGSHGSIFRKLDRAFALSEESRKQIYETGVKEFWKIPEGRIEAGEVRHTFGYPLPSSIYGGGWLYAFSDTEVSLGFVTSAEPERPEVDSHYNLQLFKQHPFISSIIRDGQLMEFGAKTITSGGFHAMPKPSGPGFLLTGETAGLVNMQRLKGLHLAMQSGIMAAETLFASLLTDDFSEKALHSYRERLENSEAYKEMHMAGNYRQAFENGLYTGLMQAGLSLKIPGLLPSEKAAASAENKPDTGKKHYLKWIQKKAAFRPDDALTFSKSTDLYASGTVHEEDQPCHLLITTEDITDICLKKCTEAFGNPCQHFCPAGVYEINHDADPFLRLSPSNCLHCKTCEIIDPYGSITWVPPEGGGGPGYRSS
>NC_010831.1|WP_012475465.1|2256081_2257464_+|magnesium-transporter
MIGTPILPEIRELIERRNFSALQRIFTDWLPVDLAELISDLPENEQGILYRLLPREAATETFEYLDIDAQQNLLNALTKKDVTHILNSMSPDDRTEMLEELPSNVVQELLKLLSFEEFKIAKTLLAYSEDSVGRLMSPDYISVKKDWTITQVLEYIRKFGHDSETLNVIYVIDDYGKLIGELASRELLLSQPDKQVKELISEEKIITLTATQDQQEALETFKRYDRVALPVVDSNGYLIGIVTVDDMLDVAEEELTEDIQKFGGIEALEEPYMDIPLLQVIKKRGVWLIVLFLGEMLTASAMAFFEDELAKAIVLATFIPLIISSGGNSGSQAATLIIRALALGEITVKDWWRIMRREILSGLALGSILGLIGVFRVVLWSFILGTYNIEWLSVGYTVGISLVGVVLLGTLAGSMLPLLLQRWGLDPATSSAPFVATIVDVAGIIIYFSVATVLLSGILL
>NC_010831.1|WP_012475464.1|2255409_2256009_+|DNA-3-methyladenine-glycosylase
MEKLGEDFFTKPTLMLAELLLGKIFVHNTGDGRCYRGKIVETEAYLAEGDEACHAYRGMTKRNRPMYGSPGTLYVYFSYGCHHLMNIVTEPAGVAGAVLIRAMEPIEGLEDMKRNRGLERTVDLLNGPGKLTRAMEITLSHNGASLSGDTVFIEKREDTAPHKICSSKRIGITKSTGLLWRRYVSDSFFVSGKKAGKAC
>NC_010831.1|WP_012475463.1|2254432_2255230_-|ParA-family-protein
MGRVIAIANQKGGVGKTTTAVNIAASIAISEFKTLLIDIDPQANATSGFGLDTEDEIENTFYHVMVQGGDINEAIRSSSLEYLDVLPSNVNLVGMEVELVNMREREYVMQKALEKVREKYDYIIIDCPPSLGLITLNSLTAADSVLIPVQAEYYALEGLGKLLNTISIVRKHLNPRLSIEGVLMTMFDSRLRLAGQVAEEVKKHFKDKVYATYIRRNVRLSEAPSHGKPALLYDAQSLGSKDYLDLAQEIFERDGNIRKFKVRRK
>NC_010831.1|WP_012475462.1|2253520_2254399_-|ParB/RepB/Spo0J-family-partition-protein
MTKKALGKGLKALIPDEGFVPLNKTDNDSRSHAGFIGSLPVEKVRVNPFQPRKDFDENALEELKNSILENGVIQPVTVSRDGDGYQLISGERRLRAVRKAGFKFIPGYIIEAGEDAGKLEMALIENIQREDLNAIEIAIALKSLVTTCNLTQDEIAQKVGKNRSTISNFLRLLKLPASIQESIRQKKISSGHARALINLPNQKQQVKVWKLIIRNKLSVRQTEDLVNRMFRDEPKPAIKDRASDDFSHLESRLRDRFATKVRIVEKNKGKGEIHIQYFSPDDLERILDIMHS
>NC_010831.1|WP_012475461.1|2252813_2253401_-|hypothetical-protein
MNSGFRLRSLLLTVLFSATAVVPAFAEEQAFPDSRATAGSIQSALFAQSDEDPSQQEEEESRRMQPWKVAMISAVLPGYGQIYNGAIWKVPVLYGLLGYFGYTALDFNDSYDTFRAQYVADPDGPQASFYQSERDRYQKKRNQQLLFLVLAYVAGIVDAYVDAHLYDFDAISEEGISSVYGPEDPTPSLSVSLRF
>NC_010831.1|WP_012475460.1|2251970_2252717_-|4-hydroxy-tetrahydrodipicolinate-reductase
MKYTLVGNGRMGQQVLGAIEASGEHTVHDILDVDAEISEQSFSGSDVIVDFTVRDAFLVNLPAMLASRVPVVVGTTGWDREMSIVRSMVEKSGSSLLYSANFSLGVNVFLRTVREAARMIAPFEDFDIAFSEQHHTAKADFPSGTALRAAEMILEANSRKKSIISQLSTDRKIEPDELQVAAIRLGSVFGQHAAAINSESDDIVVSHTARNRKGFAGGAVQAGKWLAQKHTEQPGFYTMDDFLDEVLG
>NC_010831.1|WP_012475459.1|2251468_2251969_-|hypothetical-protein
MQRSEERSKALGYGALVIVVTTTVPLLTIVNMFFFAGILSAGALSAYYYIITCQQKLSLPEAFTFSGYAGVLGSILSVTAGYILITVFDYRPGTEEFLYISDQLKGVSPEQDTRISQFQEMLRAPLEMSFVDYLLSLVITIVIYAPVAGLGGVIVVWILKRQAARA
>NC_010831.1|WP_012475458.1|2250129_2251206_-|alkene-reductase
MSLLYSPTTLGPLALQNHLVMAPMTRSRATGNVPNPLMVEYYGQRATAGLIITEGTSPSPNGLGYPRIPGIFSCAQTEGWKAVTGAVHRKGAKIFLQLMHCGRIAHPINMPDGARIMAPSAVGASGEMYTDKDGMHSYPVPEVMSEEDISATVEEYAQAARSAFIAGFDGIELHGANGYLVEQFIRPNTNRRSDSYGGAIENRARFMLEVVEAVTGAIGKERVGIRLSPFGVFNDMPLYDAMEEEYGYLARQLNVAGPAYIHLVDHSSMGAPVVPDSIKGTFRREFDGALILSGGYDAERAESDLDAKKCDLIAVGRPFLANPDLVERWKTGAAVNQPDMSTAYSPGPKGYTDYPALH
>NC_010831.1|WP_012475468.1|2260719_2261394_+|phospholipase
MLQRKHSELTYLDSPSLSEEKSDILVMLHGYGSNEKDLIQLASLLDNDLRSISPRAPLQLAPEMYGWFPLEFTSEGISVDREKARSAKETLLAFLRRIIEEYKPPEGKIWLMGFSQGSVMAYLSALAEPSLFHGIIALSGQFPDRSSLFNRDPERFRTLPFLVVHGLYDDVLPVSNGRISEAWLKDHLDSLTYREYAMGHEINAETLETIRQWLSRMRSGAAGR
>NC_010831.1|WP_012475469.1|2261475_2265159_+|methionine-synthase
MKESLASLLEKRILVLDGAMGTLIQTYKLEENDYRGERFASHGHSLKGNNDILVLTQPDIIHAIHCEFLEAGSDIIETNTFNANPVSQSDYGTENLVKHINLEAARLARKAADAYSLKDPSKPRFVAGSIGPTNKTLSLSPDVNNPGYRAVSFKEMADNYREQLEGLIEGGVDLLLVETVFDTLNCKAAILAIEEISREKGVRLPIMISGTIVDASGRTLSGQTTEAFWISVAHTPGLLSVGLNCALGAKQMRPFLEALSHVAGSLVSVYPNAGLPNEFGEYDDSPEYMASQIADFAQSGFVNIVGGCCGTKPEHIRAIAETVATIEPRKKPSMPTELRLAGLEPLIVNKTTGFINIGERTNVTGSRKFARLIREEKYDEALSIARQQVENGAQVIDINVDEGMLDSEKVMRDFVNMIGSEPEIARVPLMIDSSKWSVIESGLCCVQGKSIVNSISLKEGEDLFRERAKKVMIYGAAAVVMAFDEKGQADSLERRIEICERAYRILVDEVGFHPENIIFDPNVLTVATGIEEHDNYAVDFIESVRWIKENLPHARVSGGISNVSFSFRGNNPVREAMHAAFLFHAIHAGLDMGIVNAGQLAVYDDIEPELLERVEDVLLNRRKDATERLVEFAETIKDDGQKAEAKQAEWRNGTVEERLQHALVKGIVDYIDSDTEEARQAYASPLDIIEGPLMGGMNVIGDLFAEGKMFLPQVVKSARVMKKAVAWLIPYIEEEKAKNKDTRPVAKVLLATVKGDVHDIGKNIVSVVLACNNFEVVDIGVMMPCENILEAAEKEKADIIGLSGLITPSLDEMVHVAKEMERKGMRIPLLIGGATTSRVHTAVKIAPNYSGPVVQVLDASRSVPAVNSLLTSSMKGAFVKKLTEEQHSLRESHAARQTSRQHRSIGESRENRAKLSWSPETVTIPNHPGITEQANVSLSELREYIDWTPFFNVWELHGKYPDIFENKHCGSEARKLFEDANSLLDRICEEKSLVAKGVAGIFPANSVGDDIEIYTDESRATVLTTLHTLRQQHEKNTGSANLALADFIAPKSSGRDDYIGAFTLTAGHGVKELMKRFEAEHDDYHRIMVQALADRLAEAFAEMLHQRVRKELWGYAIDENLTKKQLLNEKYRGIRPAPGYPACPDHTEKPLIFNLLNSEAITGVTLTETYAMNPPASVCGLYFAHPEAKYFVLGSIGKDQVEEYALRKGMSMAEAEKWLAPNLNYTP
>NC_010831.1|WP_153304022.1|2265647_2267339_-|L,D-transpeptidase-family-protein
MIALLVVLLAFGPGSTQTPPVQKRTVAASSVTEVKRKSGKNHEIRENIRCHIEQLENDQALRKGRERMAFNAYLADFYRSNDFSPVWVKRSQISEMLDAIKSVEADGLLSQDYHLSAIQEFYENSPDTPFLKARYELLLTDAMFKLSYHLLHGKVDPEKLDSNWNLSEGVNGDGLAGMLRNALAGDSLAALIAQLRPKHPSYSSLKEGLARYRRLAADGGWGTVPEGPTIKEIGQYDARIPALRGRLEISGEIEQLSKVDTSYADEAMRYSVGLQEAVKKFQNRHGLQEDGEVGPKTLRALNVPVEKRVEQIRINLERYRWFVQKLEPTYLLVNIAGFNITYFEQGAFKWGSRVIVGEPFWKTPVFKAQMQYVIFNPSWNVPPGILRKEALPAIRKDPGYLSRHGLQVVDRNGNVVNPGSVNWASGAQSYRLRQPPGSRNALGRVKFMFPNKHLVYLHDTPGKHLFDKSSRAFSHGCIRLQNPLDLAELLLGWSGEKVRQTVSAGRTRRINLPTKLPVFLLYLTAVAEGEEVQFKNDVYSRDAAVLQALNSPFPYKTVESCTF
>NC_010831.1|WP_012475472.1|2267587_2268268_-|murein-L,D-transpeptidase-catalytic-domain-family-protein
MIIRLIVLVMALVVFPSHAHSAPLQKDLLNTIKTLYRTPELRNNIDYAVLQKAMTGYYFLKKKGTLKNDRVLTIIDYDQPSVKKRLFVIDMGSNRLLASSLVAHGKNSGEIRAERFSNVPGSYKSSLGFFVTDRTYSGKHGYSLRLRGVERGINDNALMRNIVIHGADYAGTDFIRRHGRLGRSLGCPALPFSQHRKVIDLIKDGSCLFINHGDKNYAGRSTLLNS
>NC_010831.1|WP_153303965.1|2268733_2269633_+|DUF4412-domain-containing-protein
MRKTLFFCLCLLMQLTLLNACQQKSGERDAENVRKEESGKQFAGGLFEKKFEGIMHMKISAPEGSQEGKLYISKNGTRFEMKLADPGTGKVMMNITTFTPSAEPNLLYTLNDQAKTYNVMDMEKLQKELGDVGENMEQDDFTVKKLGTETLHGYKCTHVLITDGQGETEMWLTKDLLSAADFARLQTGKNKSAAAFDRRLKKAGLDGFPLKTLDRKSNTSMEFVKIERKSLDKSLFVVPSGYTKKESALQMMVPEISDKEMQQLENMQEMLKDEKSVKEMEDMMKNMQKKFEGMQMPGQ
>NC_010831.1|WP_012475474.1|2269734_2270412_-|hypothetical-protein
MEQGAQPFDFGRKVDPKTFEKLIEEGYEVDPSKYLKDGWELFKSRAGEFIVFTLIIGVAAAGLSRLDMFGSLAVSVVTAPLYAGFIIVVFMLFKGETVQFGDFFKGFHFFLPLVLASFVTSILVAIGMVLLVLPGIYLMVSYMFVSMLIVDYRMEFWQAMETSRQIVTKNWFSLFVFFLVLVAINLLGALALGIGVLVTGPLSACAVCCAYRDIVGLHEAGELTT
>NC_010831.1|WP_153304023.1|2270645_2271074_+|rhodanese-like-domain-containing-protein
MIEKTIPVPVISARELLVMLDAKESVILFDTRTEEEYEKSHIEEAVHVEPNTPTEAFIERYADTIRNTKLVFYCSVGQRSSEFLNRVQQKCLDAGAIACYNLRGGIFRWYNEGHPVVDSRGATDDIHGYNPLWGMMVEKRRK
>NC_010831.1|WP_012475476.1|2271279_2271942_-|YukJ-family-protein
MSLIDGYGVLVGTIDRYACDNGHNDKEYYHCTIRVKTREGFYRCPVDLDSKKEYDGLHWRVVDLGKSDMHGLSGLESGWHFLESEPGSGALDYLRSPELQPTGKCVRAGSGSHEKGDKACLSWKYGTSRDAFADLSGVLDGAKRLLVFGEPFRVGKGVHNIHQNQGDPSESRWSRENGIWQDGAVAGIREDGTVKMFLNRFKTQATQTDERGKPLKKNEK
>NC_010831.1|WP_012475477.1|2272095_2272995_+|mechanosensitive-ion-channel-family-protein
MPPINEQITRVWNILSTPLVSIGQSELSFWKILAILITLAVIVGGAKFLRRLVTGKLLEQTVHDEGTRVALGTILQYLLVFFGFLIVLQSAGIDLSTLTVLSGTIGLGIGFGLQNIVDNFFSGLIILLERPVKVGDRIEIGSINGDVTRIAIRSTTIRTNENINIIVPNSEFVSRQVINWSHTDRNVRIAIPVGVSYKSDPEKVHNVLLRVAEHHPAILDHPRPDVIFPGFGDSSLDFELRVWTRTHIQIPKILRSEINYRIFEAFRTNGIEIPFPQRDIHFRSSAAGIWSKETEATEK
>NC_010831.1|WP_012475478.1|2273179_2275186_+|transketolase
MHTDPIDQLAINTVRMLAVDMVEKARSGHPGMPMGAAPMAYVLWTKIMKHNPDNPEWINRDRFVLSAGHGSALLYSLLHLTGYDLSMDDLRQFRQWGSKTPGHPEYGHTPGVETTTGPLGQGLSNAVGMAIAERYCATRLNKPDMELIDYSTYVICGDGDLMEGITSEAASIAGHLRLGKLICMYDHNRISIEGSTDLAFTESVHQRFEAYGWHVVEIDGNDPEAIEEALHAARQVTGKPSMIIAKTNIGFGSPNKQDSASSHGAPLGAEEVALVRKYFGFPEESSFFVPESVAAHMSAVCEKGSRSETTWNELFNTYGKSHPELAEEMETMLRNELPEGWETLLPQFSPEEKLATRQASSRVLHALVGKIPFLVGGSADLAPSTGTEVKHATDFTSENYGGAIFRFGVREHAMGAIINGMALSRILIPYGATFLVFADYMKPALRLAAIMQVPSIFIFTHDSIAVGEDGPTHQPIEQLAMMRSIPGLTVIRPADAQETKAAWYIALTQNKPTVLVFSRQTLPVLDQEKYPVVKGTPKGAYILSEWSAPSTDGNRPVILIATGAEVHLALEAQSALLNAGVPARVVSMPSRELFEQQPESYRNEVLPPSIRRRIVIEAASPFGWDKYATDEGSILGINRFGTSAPGNTVLREYGFSAAAIVEAAKNLQ

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Crispr_ID: NC_010831_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010831_9

2342646-2345418

TypeI-E

I-E,II-B

Consensus_repeat	Method
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CRISPRCasFinder
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CRT
GTCTTCCCCACAGGCGTGGGGGTGTTTCC	PILER-CR
GTCTTCCCCACAGGCGTGGGGGTGTTTC	PILER-CR

45 spacers

cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,DEDDh,WYL

The CRISPR arrays of NC_010831_9

>merge|NC_010831|9|2342646-2345418|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTCTTCCCCACAGGCGTGGGGGTGTTTCCACCAGGGCCGCCATGCGCGGCCTTTAGGCGTGGTCTTCCCCACAGGCGTGGGGGTGTTTCCTGTATAGCAGTTATTCGGATCATTACCGACACGTCTTCCCCACAGGCGTGGGGGTGTTTCCACTTGTGCGTCAAGATACTTTTTAACCGTCAAGTCTTCCCCACAGGCGTGGGGGTGTTTCCGCCTGGCCCGCCATTGCGCGGGCTTCGGGCGTGTCTTCCCCACAGGCGTGGGGGTGTTTCCGATATTTTGCGCTTGTCGCGTTTAATCGTTACGTCTTCCCCACAGGCGTGGGGGTGTTTCCGGACTGTTGCTCGGTCAGCCGATGTTTATGTCGTCTTCCCCACAGGCGTGGGGGTGTTTCTCCTGTTGCGTCATGCACAAGTAAGGCAAGCAAGTCTTCCCCACAGGCGTGGGGGTGTTTCCAGCAGGGACTGAGGCAAGCAAAGCTGTTCAGAGTCTTCCCCACAGGCGTGGGGGTGTTTCCAAAAGGAACAACATCATGACACTTACCGAACTGTCTTCCCCACAGGCGTGGGGGTGTTTCCACTAACTCCGATCCCCACCACGTCCGCGACAAGTCTTCCCCACAGGCGTGGGGGTGTTTCCGGATTATAACCCCGGTGTGACCAATAGGGATCGTCTTCCCCACAGGCGTGGGGGTGTTTCCAGCCCGTTCACTGATCACCTCCTCTCGGCAATGTCTTCCCCACAGGCGTGGGGGTGTTTCCATGATAGGTTTATACAGTGAGAAATATGGATTGTCTTCCCCACAGGCGTGGGGGTGTTTCTTGCAAAAGTTACACTCATCATTCCTAATGGCCGTCTTCCCCACAGGCGTGGGGGTGTTTCCTTACAAGTATCGCTTTGATCAGTCGGTCCCGGGTCTTCCCCACAGGCGTGGGGGTGTTTCCTCTTGTGTTGACTTTGTTACAAGTCTGAGTCGGTCTTCCCCACAGGCGTGGGGGTGTTTCCATTTCAAGAAGCTCGTCATAATCACCATCGGTGTCTTCCCCACAGGCGTGGGGGTGTTTCTCGTGCCAAAAGCGGCTGGTTCATCGTCATAGGGTCTTCCCCACAGGCGTGGGGGTGTTTCCAGCGTCTGACGGAACCGGGAAAAAAGATGTTTGTCTTCCCCACAGGCGTGGGGGTGTTTCTCTTGGTGATCATGCGTGATCCGTCCTGGTATTGTCTTCCCCACAGGCGTGGGGGTGTTTCTCCGGTAAAGATGCTCGCCAGATCACCGCCGACGTCTTCCCCACAGGCGTGGGGGTGTTTCTTGCTCCGACGTTCAGGATTTTTCCTGTATACGGTCTTCCCCACAGGCGTGGGGGTGTTTCTACCGGCAGCTTTGTTAAGCTGAAAAAGCGTTTGTCTTCCCCACAGGCGTGGGGGTGTTTCCGTTGTAACCTATCGCGAGAGCGATTTGCGGCCGTCTTCCCCACAGGCGTGGGGGTGTTTCTCTATATGTCTCTTTGGGACTCAACACGACGCCGTCTTCCCCACAGGCGTGGGGGTGTTTCCCAGCCCCGGCATATGACTGGGGCGCATCTAACGTCTTCCCCACAGGCGTGGGGGTGTTTCTATGTAAAAGATCGTTGTTTTCTACGATCCCACGTCTTCCCCACAGGCGTGGGGGTGTTTCTGGCAAGGAGCAATCTTCGTCCACTGGCATCGCGTCTTCCCCACAGGCGTGGGGGTGTTTCTACTGCAAGTTCGGCACTATCTCGATTTAGTGGGTCTTCCCCACAGGCGTGGGGGTGTTTCCCGCCTGGCCCGCTTTACGCGGGCTTTAGGCGGTCTTCCCCACAGGCGTGGGGGTGTTTCTCAATTCTTCGAGCCACTCGATCGCCCCATTGGGTCTTCCCCACAGGCGTGGGGGTGTTTCCCGGGAAAAAAGATGTTTCCGGAAAAGCGATCAGTCTTCCCCACAGGCGTGGGGGTGTTTCTATGATTACTTCGTCACAGGCTTTTAGAAAATTGTCTTCCCCACAGGCGTGGGGGTGTTTCCAAAAGCGAAATACAAAACCTGAAAGATCAGATGTCTTCCCCACAGGCGTGGGGGTGTTTCCTGTAAAACTATGGGCATACCGATTATTGGTGAGTCTTCCCCACAGGCGTGGGGGTGTTTCTTGCGTATATCTTGTAAAGGTGTTTCATTGTAGGTCTTCCCCACAGGCGTGGGGGTGTTTCCCTCGCGAACGGGTTTTCCTCTTTCGGCTTTTCGTCTTCCCCACAGGCGTGGGGGTGTTTCCGGGTGGCTGTACCTGATACAGGATCAATGATCGTCTTCCCCACAGGCGTGGGGGTGTTTCCAGCGCGTGCAGGGCAAAACAACTTTCTCTGAGGTCTTCCCCACAGGCGTGGGGGTGTTTCCAGGACAACAGAGATGAACTATCAAGAGGCATTGTCTTCCCCACAGGCGTGGGGGTGTTTCCCGTTACGGTCACGGGTAAGAACGGCAGCGGTAGTCTTCCCCACAGGCGTGGGGGTGTTTCTACAGCGACCAGGCTGAGCAGCAGCTTGATGCCGTCTTCCCCACAGGCGTGGGGGTGTTTCCTTCTTCCATCACCTCGCTTATATGCCGGGTGTGTCTTCCCCACAGGCGTGGGGGTGTTTCATAACACCGGGCCATCAGGGATGATGAGCGTAAGTCTTCCCCACAGGCGTGGGGGTGTTTCTGCATTCCGTCAGGGCGCCTCCATACCCCCCCCCGTCTTCCCCACAGGCGTGGGGGTGTTTC

>NC_010831|9|9|2342646-2345418|CRISPRCasFinder
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CACCAGGGCCGCCATGCGCGGCCTTTAGGCGTG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTGTATAGCAGTTATTCGGATCATTACCGACAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CACTTGTGCGTCAAGATACTTTTTAACCGTCAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGCCTGGCCCGCCATTGCGCGGGCTTCGGGCGT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGATATTTTGCGCTTGTCGCGTTTAATCGTTAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGGACTGTTGCTCGGTCAGCCGATGTTTATGTC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCCTGTTGCGTCATGCACAAGTAAGGCAAGCAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCAGGGACTGAGGCAAGCAAAGCTGTTCAGA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAAAAGGAACAACATCATGACACTTACCGAACT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CACTAACTCCGATCCCCACCACGTCCGCGACAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGGATTATAACCCCGGTGTGACCAATAGGGATC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCCCGTTCACTGATCACCTCCTCTCGGCAAT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CATGATAGGTTTATACAGTGAGAAATATGGATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCAAAAGTTACACTCATCATTCCTAATGGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTTACAAGTATCGCTTTGATCAGTCGGTCCCGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTCTTGTGTTGACTTTGTTACAAGTCTGAGTCG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CATTTCAAGAAGCTCGTCATAATCACCATCGGT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCGTGCCAAAAGCGGCTGGTTCATCGTCATAGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCGTCTGACGGAACCGGGAAAAAAGATGTTT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCTTGGTGATCATGCGTGATCCGTCCTGGTATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCCGGTAAAGATGCTCGCCAGATCACCGCCGAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCTCCGACGTTCAGGATTTTTCCTGTATACG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACCGGCAGCTTTGTTAAGCTGAAAAAGCGTTT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGTTGTAACCTATCGCGAGAGCGATTTGCGGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCTATATGTCTCTTTGGGACTCAACACGACGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCAGCCCCGGCATATGACTGGGGCGCATCTAAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TATGTAAAAGATCGTTGTTTTCTACGATCCCAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TGGCAAGGAGCAATCTTCGTCCACTGGCATCGC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACTGCAAGTTCGGCACTATCTCGATTTAGTGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGCCTGGCCCGCTTTACGCGGGCTTTAGGCG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCAATTCTTCGAGCCACTCGATCGCCCCATTGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGGGAAAAAAGATGTTTCCGGAAAAGCGATCA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TATGATTACTTCGTCACAGGCTTTTAGAAAATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAAAAGCGAAATACAAAACCTGAAAGATCAGAT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTGTAAAACTATGGGCATACCGATTATTGGTGA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCGTATATCTTGTAAAGGTGTTTCATTGTAG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCTCGCGAACGGGTTTTCCTCTTTCGGCTTTTC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGGGTGGCTGTACCTGATACAGGATCAATGATC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCGCGTGCAGGGCAAAACAACTTTCTCTGAG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGGACAACAGAGATGAACTATCAAGAGGCATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGTTACGGTCACGGGTAAGAACGGCAGCGGTA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACAGCGACCAGGCTGAGCAGCAGCTTGATGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTTCTTCCATCACCTCGCTTATATGCCGGGTGT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	ATAACACCGGGCCATCAGGGATGATGAGCGTAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TGCATTCCGTCAGGGCGCCTCCATACCCCCCCCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC

>NC_010831|9|3|2342646-2345418|CRT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CACCAGGGCCGCCATGCGCGGCCTTTAGGCGTG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTGTATAGCAGTTATTCGGATCATTACCGACAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CACTTGTGCGTCAAGATACTTTTTAACCGTCAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGCCTGGCCCGCCATTGCGCGGGCTTCGGGCGT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGATATTTTGCGCTTGTCGCGTTTAATCGTTAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGGACTGTTGCTCGGTCAGCCGATGTTTATGTC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCCTGTTGCGTCATGCACAAGTAAGGCAAGCAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCAGGGACTGAGGCAAGCAAAGCTGTTCAGA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAAAAGGAACAACATCATGACACTTACCGAACT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CACTAACTCCGATCCCCACCACGTCCGCGACAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGGATTATAACCCCGGTGTGACCAATAGGGATC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCCCGTTCACTGATCACCTCCTCTCGGCAAT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CATGATAGGTTTATACAGTGAGAAATATGGATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCAAAAGTTACACTCATCATTCCTAATGGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTTACAAGTATCGCTTTGATCAGTCGGTCCCGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTCTTGTGTTGACTTTGTTACAAGTCTGAGTCG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CATTTCAAGAAGCTCGTCATAATCACCATCGGT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCGTGCCAAAAGCGGCTGGTTCATCGTCATAGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCGTCTGACGGAACCGGGAAAAAAGATGTTT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCTTGGTGATCATGCGTGATCCGTCCTGGTATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCCGGTAAAGATGCTCGCCAGATCACCGCCGAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCTCCGACGTTCAGGATTTTTCCTGTATACG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACCGGCAGCTTTGTTAAGCTGAAAAAGCGTTT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGTTGTAACCTATCGCGAGAGCGATTTGCGGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCTATATGTCTCTTTGGGACTCAACACGACGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCAGCCCCGGCATATGACTGGGGCGCATCTAAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TATGTAAAAGATCGTTGTTTTCTACGATCCCAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TGGCAAGGAGCAATCTTCGTCCACTGGCATCGC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACTGCAAGTTCGGCACTATCTCGATTTAGTGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGCCTGGCCCGCTTTACGCGGGCTTTAGGCG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCAATTCTTCGAGCCACTCGATCGCCCCATTGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGGGAAAAAAGATGTTTCCGGAAAAGCGATCA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TATGATTACTTCGTCACAGGCTTTTAGAAAATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAAAAGCGAAATACAAAACCTGAAAGATCAGAT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTGTAAAACTATGGGCATACCGATTATTGGTGA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCGTATATCTTGTAAAGGTGTTTCATTGTAG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCTCGCGAACGGGTTTTCCTCTTTCGGCTTTTC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGGGTGGCTGTACCTGATACAGGATCAATGATC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCGCGTGCAGGGCAAAACAACTTTCTCTGAG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGGACAACAGAGATGAACTATCAAGAGGCATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGTTACGGTCACGGGTAAGAACGGCAGCGGTA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACAGCGACCAGGCTGAGCAGCAGCTTGATGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTTCTTCCATCACCTCGCTTATATGCCGGGTGT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	ATAACACCGGGCCATCAGGGATGATGAGCGTAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TGCATTCCGTCAGGGCGCCTCCATACCCCCCCCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC

>NC_010831|9|3|2342768-2343101|PILER-CR
GTCTTCCCCACAGGCGTGGGGGTGTTTCC	ACTTGTGCGTCAAGATACTTTTTAACCGTCAA
GTCTTCCCCACAGGCGTGGGGGTGTTTCC	GCCTGGCCCGCCATTGCGCGGGCTTCGGGCGT
GTCTTCCCCACAGGCGTGGGGGTGTTTCC	GATATTTTGCGCTTGTCGCGTTTAATCGTTAC
GTCTTCCCCACAGGCGTGGGGGTGTTTCC	GGACTGTTGCTCGGTCAGCCGATGTTTATGTC
GTCTTCCCCACAGGCGTGGGGGTGTTTCT	CCTGTTGCGTCATGCACAAGTAAGGCAAGCAA
GTCTTCCCCACAGGCGTGGGGGTGTTTCCAGCAGGGACTGAGGCAAGCAAAGCTGTTCAGAGTCTTCCCCACAGGCGTGGGGGTGTTTCCAAAAGGAACAACATCATGACACTTACCGAACTGTCTTCCCCACAGGCGTGGGGGTGTTTC	CACTAACTCCGATCCCCACCACGTCCGCGACAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGGATTATAACCCCGGTGTGACCAATAGGGATC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCCCGTTCACTGATCACCTCCTCTCGGCAAT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CATGATAGGTTTATACAGTGAGAAATATGGATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCAAAAGTTACACTCATCATTCCTAATGGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTTACAAGTATCGCTTTGATCAGTCGGTCCCGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTCTTGTGTTGACTTTGTTACAAGTCTGAGTCG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CATTTCAAGAAGCTCGTCATAATCACCATCGGT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCGTGCCAAAAGCGGCTGGTTCATCGTCATAGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCGTCTGACGGAACCGGGAAAAAAGATGTTT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCTTGGTGATCATGCGTGATCCGTCCTGGTATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCCGGTAAAGATGCTCGCCAGATCACCGCCGAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCTCCGACGTTCAGGATTTTTCCTGTATACG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACCGGCAGCTTTGTTAAGCTGAAAAAGCGTTT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGTTGTAACCTATCGCGAGAGCGATTTGCGGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCTATATGTCTCTTTGGGACTCAACACGACGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCAGCCCCGGCATATGACTGGGGCGCATCTAAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TATGTAAAAGATCGTTGTTTTCTACGATCCCAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TGGCAAGGAGCAATCTTCGTCCACTGGCATCGC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACTGCAAGTTCGGCACTATCTCGATTTAGTGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGCCTGGCCCGCTTTACGCGGGCTTTAGGCG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCAATTCTTCGAGCCACTCGATCGCCCCATTGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGGGAAAAAAGATGTTTCCGGAAAAGCGATCA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TATGATTACTTCGTCACAGGCTTTTAGAAAATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAAAAGCGAAATACAAAACCTGAAAGATCAGAT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTGTAAAACTATGGGCATACCGATTATTGGTGA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCGTATATCTTGTAAAGGTGTTTCATTGTAG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCTCGCGAACGGGTTTTCCTCTTTCGGCTTTTC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGGGTGGCTGTACCTGATACAGGATCAATGATC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCGCGTGCAGGGCAAAACAACTTTCTCTGAG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGGACAACAGAGATGAACTATCAAGAGGCATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGTTACGGTCACGGGTAAGAACGGCAGCGGTA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACAGCGACCAGGCTGAGCAGCAGCTTGATGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTTCTTCCATCACCTCGCTTATATGCCGGGTGT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	ATAACACCGGGCCATCAGGGATGATGAGCGTAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TGCATTCCGTCAGGGCGCCTCCATACCCCCCCCC


>NC_010831|9|4|2343195-2345418|PILER-CR
	ACTTGTGCGTCAAGATACTTTTTAACCGTCAA
GTCTTCCCCACAGGCGTGGGGGTGTTTCC	GCCTGGCCCGCCATTGCGCGGGCTTCGGGCGT
GTCTTCCCCACAGGCGTGGGGGTGTTTCC	GATATTTTGCGCTTGTCGCGTTTAATCGTTAC
GTCTTCCCCACAGGCGTGGGGGTGTTTCC	GGACTGTTGCTCGGTCAGCCGATGTTTATGTC
GTCTTCCCCACAGGCGTGGGGGTGTTTCT	CCTGTTGCGTCATGCACAAGTAAGGCAAGCAA
GTCTTCCCCACAGGCGTGGGGGTGTTTCCAGCAGGGACTGAGGCAAGCAAAGCTGTTCAGAGTCTTCCCCACAGGCGTGGGGGTGTTTCCAAAAGGAACAACATCATGACACTTACCGAACTGTCTTCCCCACAGGCGTGGGGGTGTTTC	CACTAACTCCGATCCCCACCACGTCCGCGACAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGGATTATAACCCCGGTGTGACCAATAGGGATC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCCCGTTCACTGATCACCTCCTCTCGGCAAT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CATGATAGGTTTATACAGTGAGAAATATGGATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCAAAAGTTACACTCATCATTCCTAATGGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTTACAAGTATCGCTTTGATCAGTCGGTCCCGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTCTTGTGTTGACTTTGTTACAAGTCTGAGTCG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CATTTCAAGAAGCTCGTCATAATCACCATCGGT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCGTGCCAAAAGCGGCTGGTTCATCGTCATAGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCGTCTGACGGAACCGGGAAAAAAGATGTTT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCTTGGTGATCATGCGTGATCCGTCCTGGTATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCCGGTAAAGATGCTCGCCAGATCACCGCCGAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCTCCGACGTTCAGGATTTTTCCTGTATACG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACCGGCAGCTTTGTTAAGCTGAAAAAGCGTTT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGTTGTAACCTATCGCGAGAGCGATTTGCGGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCTATATGTCTCTTTGGGACTCAACACGACGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCAGCCCCGGCATATGACTGGGGCGCATCTAAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TATGTAAAAGATCGTTGTTTTCTACGATCCCAC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TGGCAAGGAGCAATCTTCGTCCACTGGCATCGC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACTGCAAGTTCGGCACTATCTCGATTTAGTGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGCCTGGCCCGCTTTACGCGGGCTTTAGGCG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TCAATTCTTCGAGCCACTCGATCGCCCCATTGG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGGGAAAAAAGATGTTTCCGGAAAAGCGATCA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TATGATTACTTCGTCACAGGCTTTTAGAAAATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAAAAGCGAAATACAAAACCTGAAAGATCAGAT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTGTAAAACTATGGGCATACCGATTATTGGTGA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TTGCGTATATCTTGTAAAGGTGTTTCATTGTAG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCTCGCGAACGGGTTTTCCTCTTTCGGCTTTTC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CGGGTGGCTGTACCTGATACAGGATCAATGATC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGCGCGTGCAGGGCAAAACAACTTTCTCTGAG
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CAGGACAACAGAGATGAACTATCAAGAGGCATT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CCGTTACGGTCACGGGTAAGAACGGCAGCGGTA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TACAGCGACCAGGCTGAGCAGCAGCTTGATGCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC	CTTCTTCCATCACCTCGCTTATATGCCGGGTGT
GTCTTCCCCACAGGCGTGGGGGTGTTTC	ATAACACCGGGCCATCAGGGATGATGAGCGTAA
GTCTTCCCCACAGGCGTGGGGGTGTTTC	TGCATTCCGTCAGGGCGCCTCCATACCCCCCCCC
GTCTTCCCCACAGGCGTGGGGGTGTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_010831.1\|WP_012475534.1\|2342308_2342626_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|187779
NC_010831.1\|WP_012475533.1\|2341430_2342306_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_010831.1\|WP_153303970.1\|2348245_2348590_-\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_041471660.1\|2339612_2340743_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_010831.1\|WP_012475539.1\|2348613_2349348_+\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213185
NC_010831.1\|WP_012475536.1\|2347024_2347348_-\|phosphatidylinositol-kinase	unknown	unknown	gnl\|CDD\|274416
NC_010831.1\|WP_012475541.1\|2351068_2352478_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NC_010831.1\|WP_012475528.1\|2336844_2338434_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_010831.1\|WP_012474389.1\|2333371_2334778_+\|IS1380-like-element-ISCph7-family-transposase	unknown	unknown	gnl\|CDD\|379340
NC_010831.1\|WP_012475525.1\|2331896_2332439_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NC_010831.1\|WP_012475543.1\|2352918_2353704_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NC_010831.1\|WP_012475535.1\|2346067_2347021_-\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377920
NC_010831.1\|WP_012475540.1\|2349530_2351060_+\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|379101
NC_010831.1\|WP_012475542.1\|2352551_2352899_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NC_010831.1\|WP_012475532.1\|2340739_2341441_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_010831.1\|WP_012475524.1\|2330932_2331907_+\|WYL-domain-containing-transcriptional-regulator	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_010831.1\|WP_012475529.1\|2338437_2338971_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_010831.1\|WP_012475537.1\|2347351_2347558_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|213767
NC_010831.1\|WP_153303969.1\|2345762_2345936_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NC_010831.1\|WP_012475530.1\|2338967_2339594_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|187858

Protein	Function_ID	Function_description	E-value
NC_010831.1\|WP_012475534.1\|2342308_2342626_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187779	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.17076e-38
NC_010831.1\|WP_012475533.1\|2341430_2342306_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	5.43839e-131
NC_010831.1\|WP_041471660.1\|2339612_2340743_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	9.33543e-114
NC_010831.1\|WP_012475539.1\|2348613_2349348_+\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213185	cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system. The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.	4.80267e-148
NC_010831.1\|WP_012475536.1\|2347024_2347348_-\|phosphatidylinositol-kinase	gnl\|CDD\|274416	TIGR03071, couple_hipA, HipA N-terminal domain. Although Pfam models pfam07805 and pfam07804 currently are called HipA-like N-terminal domain and HipA-like C-terminal domain, respectively, those models hit the central and C-terminal regions of E. coli HipA but not the N-terminal region. This model hits the N-terminal region of HipA and its homologs, and also identifies proteins that lack match regions for pfam07804 and pfam07805.	7.90606e-33
NC_010831.1\|WP_012475541.1\|2351068_2352478_+\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	2.25397e-65
NC_010831.1\|WP_012475528.1\|2336844_2338434_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	3.74587e-96
NC_010831.1\|WP_012474389.1\|2333371_2334778_+\|IS1380-like-element-ISCph7-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	0
NC_010831.1\|WP_012475525.1\|2331896_2332439_+\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	4.64196e-52
NC_010831.1\|WP_012475543.1\|2352918_2353704_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.10538e-30
NC_010831.1\|WP_012475535.1\|2346067_2347021_-\|HipA-domain-containing-protein	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	4.64488e-60
NC_010831.1\|WP_012475540.1\|2349530_2351060_+\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|379101	pfam13282, DUF4070, Domain of unknown function (DUF4070). This is a bacterial domain often found at the C-terminus of Radical_SAM methylases.	3.99675e-59
NC_010831.1\|WP_012475542.1\|2352551_2352899_+\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	2.41685e-09
NC_010831.1\|WP_012475532.1\|2340739_2341441_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	1.10539e-61
NC_010831.1\|WP_012475524.1\|2330932_2331907_+\|WYL-domain-containing-transcriptional-regulator	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	8.84034e-50
NC_010831.1\|WP_012475529.1\|2338437_2338971_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.63356e-36
NC_010831.1\|WP_012475537.1\|2347351_2347558_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	3.92425e-20
NC_010831.1\|WP_153303969.1\|2345762_2345936_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.000550392
NC_010831.1\|WP_012475530.1\|2338967_2339594_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	3.80454e-52

>NC_010831.1|WP_012475534.1|2342308_2342626_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MVIVVANDIPPAVRGRMKLWFVEPRANVFVSGIKDSVAKKVIDYLHKHCPSESGLMVFKSCNEAPGYEIFGHGDTRKQLIELSGMQLVIEKHSEPNRASKTLTGG
>NC_010831.1|WP_012475533.1|2341430_2342306_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTTEKIVPESNQSRLLIKITRDTLPQVKDKYPFLYLERGRLEIDDSSIKWIDCDCNVVRLPVAQLNCLLLGPGTAVTHEAVKVMAAANCGICWVGEDSLIFYAAGQTPTSDSRNFRRQMVLSADSDKSLKVARRMFARRFPDAKLETKSLKQMMGMEGLRVRQLYVQKAQEYKVGWKGRQFTPGKFEIGDLTNRILTSANAALYGIICSAVHSMGYSPHMGFIHTGSPLPFIYDLADLYKESLSIDLAFRLTALMAGTYDRHKIATEFRRKVIEMDLLARIGPDIEEMLGR
>NC_010831.1|WP_012475532.1|2340739_2341441_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSKSFLLLWLEAPLQSWGADSRFGRRGTIDFPTKSGILGMLCCALGAGGEQKELLAEMGKLRQTVLSFRRSKEREALLRDFHMVGSGYDDKNPWETLLIPKKSDGTPAVNGGSKITYRYYLQDAAFAVITEVPSGKSTLFADSLENPCWDIYFGRKCCAPTDFIYRGCFNTESIAIGKALEIAQEKKLMEDFRVVDGEHEGETIILNDVPIQFGEQKLYRERRVTVISCADDN
>NC_010831.1|WP_041471660.1|2339612_2340743_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTNPFRNTRIEYHILQSFPVTCLNRDDVGAPKTAIVGGSTRARVSSQCWKRQVRLAMQDFGIPHGSRTKLISVLIENACKEKGATIEQAKACGEKFEQVFIKKPKQNKESEDSDNSANVASSQKKTDTLLFMSPNEAAMVADAFAAKNFVPDAVITKNDSKKQAKEIADLLSPYFGKTDAYDIALFGRMVAQAAELNIEAASSFSHAISTHKVSNEVEFFTALDDLAEEPGSAHMGSLEFNSATYYRYISLDLGQLWESIGGEHLAEAVEAFTKALFVAVPSARQSTQSGASPWEFAKVFIRKGQRLQVPFETAVKAKDGGYLLPSITALTEYLTKKEALAGSLFGKQREFTFGENSSFSIDDLVTGLKSYDPEGL
>NC_010831.1|WP_012475530.1|2338967_2339594_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MIASILRLGPKEIKALRITDDYSLHRVVYSLFEDRRSEAEKNASIPSGFLYADKGGDSNGRLILMLSDREPRKPEHGRLESKPIDETFLMFDRYRFSVVINPSRRESKSRKIIAIRDRNEIAQWFSQKAPASWGFTVNPVTLEVRTLQAKQFVKKEHCVTQNGAELTGELDVVDRTLFIKSFKQGIGRGRAFGFGLLQIAPLKVSITN
>NC_010831.1|WP_012475529.1|2338437_2338971_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNNEPETKISRSQAFVSFIITLIKQNKGTSAALRRADNPATEYQSWEYLAAFNIDLEKPWERLPFAAVAAAIAKSKIEKNGSIGIGNAIARCYEDGNQNDQAKAKLRRLLACDSVEEVCRILRPLFSLFESRGVTPINYAGLLEQLLKFHWDSQRIKTQWAQEFYRQNQKIETKEAV
>NC_010831.1|WP_012475528.1|2336844_2338434_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MIPENCFNLIDEPWIPVIDKGRISLRQVFSEPDNRALGGNPLQKLALTKLLLAIAQATCTPENDEIHASMESSELARKSIDYLDKWYDRFWLYGEKPFLQMSAIHGLIEQRKRKYLNAAKKDSVRRTAEVNALPKSLGMGFYPDMPSENNTILTQYQIPKALADSDKALFIVSLMNFALGGKRVEKNLDNQLMLGYAGKTPSAKSAPSLGNYIGYLHSILVGETLADTLLINLLSHERIQANVYWKSGLGKAPWEEMPTGVACPIATNLKSSYMATLVAMSRFVLLQGDGIYYVEGIQYPSHKEGWREPSMAVNAQAATPKIKWIDPNKRPWRELVSLLAFMDGGGSQGYECQFIKYGLKNFGDRFKRIGVWSGGLRVSTNRCDQSVKQDNDFVESLVFLESKIIGQLWYQQFKLEMVALNKISDTIFTATVAYYQSLVEKMDKKKAIKSFKNIADKATSLFWELCERHFQELVDACEPPYETKKTRIVFAQAALKAFDTFCPKESARQIDAWAKSRPNLINYLNSENK
>NC_010831.1|WP_012474389.1|2333371_2334778_+|IS1380-like-element-ISCph7-family-transposase
MQLPFANIHTEQPTQQALFPDCFEVSVAPVKGKKVVLDFQGGNTTSDAGVLLLKEVESMTRIVPKLADCIADSRRTSSVMHVIHDLIAQRVYQIACGYEDGNDSNSLRKDPALKMALNRLPESGDDLASQPTFSRLENMVTRPELYRMAVGFLDHFLDSYTEAPRVIVLDFDDTEDVVHGKQQLALFNGYHQETCYQPLHVFEGLTGKLIASILRPGRRPTGKEIVSYVKRIIRHIRSRWPETIIVYRGDSHYGVPEVYSFLASKRNCYSVTGLGGNDVLLRSVKDIIEEVKKHGAGYRRYHTFQYQARSWNGSRRVVAKVEMTEKGLNVRFISTDIQEAKAKTLYEQIYSARGNDELYIKAHKTFMKSDRTSCHRFLANQFRVFLHSAAYVLVHAFQTNLLRGTALATATFETIRLKLLKIGAKVIEMKTRIKVHLPTSYPYKPILNKCLTILEHLRSVPWPSTAIP
>NC_010831.1|WP_012475525.1|2331896_2332439_+|3'-5'-exonuclease
MKSDISSPQRERVVAVDVETTGLSPLRGDRVIEVAAVAIVNGVIEEHFCCLINVNAPIPTVVQKIHGITPELLAGEKPPEAVWPEFLNFIGSNILIAHNAPFDISFIRNELQLLGLSLLNGSQCTLAFSRKKFPQLKSHKLDNVARHVLGGMPKGIKLHRASGDALLTAMIWQAIENTQL
>NC_010831.1|WP_012475524.1|2330932_2331907_+|WYL-domain-containing-transcriptional-regulator
MKQSRPPVVRMYFLDEQLRKKLYPNCTSLAAHFEVSRKTIQRDIDYMRDLLDAPIEYHSKKKGFFYRENWVFLPSAFLEQNEAEALKATKKVLSQYRGTPYYNEVSRALDKVLQYLPGSLGENDLFSIYSFDNLNETQEFSGHFATIEDAIRQKLKIGIVYDAPSSGKVTERTIHPYRLHYSHTSQTWYLVAHCELRKEIRTFVVGRIKKLRVQKGNFELPQDFSVDAYLSKTFDQVVGETEQVVSIRFSAYQAPWIREKQWHPTQRIEPLDDGGLTVHFRVSGLDAIKRWVMRYGKEAEVLEPAELRDMVRNEVRDMGVVYEE
>NC_010831.1|WP_153303969.1|2345762_2345936_+|hypothetical-protein
MEKSAPPAKPAAKAAKGAPVAKSAPAKKQAPSGKKASNLEKPLRMPPIDTGLKNKYR
>NC_010831.1|WP_012475535.1|2346067_2347021_-|HipA-domain-containing-protein
MENRCLYCYEPLAPNEVDFHPKCSKKIFGTDTPPLLPYSENQLDELALEIIRSQVTITGVQPKLSLHLEPAGSKAAPQRLTIVGLWGGYILNPPSQRFSQLPEIEDVTMHMAEAVRIATVPHSLIRMQSGSLAYLTRRIDRYRKGKLHMEDMCQLTGRLTENKYHGSYEQIAKAILRYSANPGLDVINFFEVVLFSFLTGNADMHLKNFSLIDIPKKGGINLAPSYDLVSTALVLPSDKEELALTLNGKKKRITLKDFKTALDSLSVNEVVQERMFTKFRKVKPVWEGLIDRSFLDKEKQEAYKELLRKKYRQIRLV
>NC_010831.1|WP_012475536.1|2347024_2347348_-|phosphatidylinositol-kinase
MQKAEIQYLDRTAGWLIQDEEGYHFIYDQEYLNSRDPKPVSLTLPLRESEYTSTTMFPFFDGLIPEGWLLDVAERNWKLDPRDRMGLLMNCCKDCIGAVSVHPVIRE
>NC_010831.1|WP_012475537.1|2347351_2347558_-|helix-turn-helix-transcriptional-regulator
MKDLSEFVRFKRKSLGMTQPELAEKAGTGLRFIRDLEQGKKTLRMDKVNQVLGLFGYELAPVKQEREV
>NC_010831.1|WP_153303970.1|2348245_2348590_-|hypothetical-protein
MNQQSLNVGCNIRDYRDVKSSREKIGSLLRKPEKKLKTTCSHAAPCTNITQGDPASMQTPAPKMDSRVKHGNDRKWRGVMPPCVLFKLLHGVMRHPSMKKVKGQKSKVKSQKKD
>NC_010831.1|WP_012475539.1|2348613_2349348_+|LPS-export-ABC-transporter-ATP-binding-protein
MVSTLSCSNLKKIYNKREVVRSSTLEVRQGEIVGLLGPNGAGKTTTFYMIVGLIRPNVGDVFLDERNITALPMYKRARLGIGYLPQESSVFRKLTVEENILSVLEFTSLSKAEQRERTEEMLEDLNIAGIRKSMGYALSGGERRRTEIARALAIRPKFILLDEPFAGVDPIAVEDIQEIVEGLVKRNIGVLITDHNVHETLSITNHAYLLFDGTIFMQGTPEEIADNPEARKLYLGEKFTLDRY
>NC_010831.1|WP_012475540.1|2349530_2351060_+|B12-binding-domain-containing-radical-SAM-protein
MNILLLYPEFPDTFWSFKHALKFVKKKASLPPLGLVTVAAMLPRQWDKKLVDLNASALSQKDLEWADMALISAMGVQKESAQKIIARCRAANLTIVAGGPLFTSEPECFPEVDHFVLNEAEITLPPFLEDLANGTARKFYRSENYPDIKTSPVPQWELLDMNNYVAMAIQFSRGCPYQCDFCNVTALLGHKIRTKTSDQILRELDAIDERGWRESVFFVDDNFIAHKAYLKKDLLPKLIEWQASKKTSRKFFTECSINIADDPELMELMVRAGFNQVFIGIETPDNSALESCGKQHNTSRDMLENIKRIQRAGLEVQGGFIVGFDTDTPSTFQQQIEFIQNSGIVTAMVGMLQALPGTKLYERMKTEGRLLSSSSGDNVDSTTNIIPKMDIEVLRKGYRDMMDYLYSPKNYYQRIKTLLLEYKPARFKSRVKPRQLVALFRSMVVLGIVGEERFHYWKMLVWTLFRQPHSLSLAITLFIYGHHFRKVCAIHLKNGGYANSATSPIVIQR
>NC_010831.1|WP_012475541.1|2351068_2352478_+|HD-domain-containing-protein
MISNSFLFRSEGGFIRLPVWGHIPLNTPLKKILSHPAFLRLKGIRQLSFAQQVYPGANHTRFEHSIGVYHLMKLILQRIVTNPLAESLQNETLAFDDHTCKLLLASAILHDIGHYPHAHVLEEQAPFHEGKAVFAAHETLVDRFLFERHEGFSPIAEILESDWGIDPLETAGIIKGTAPGRFKKLISGTLDPDKMDYLMRDAHHCNIPYGSIDIERLIESFVPDPERQRFAITEKGIAPLESLLFSKYMMMRNVYWHHTSRTFSVMLRRMLQDAINASVILPDALRTLFYDNSDDRVLHELTQRTERSWPASKELLGNIMQRKIYKRALTFTPYRNGAREPETWMFAYTTDHERRTQKEKAICDILNRHAALGLKGHEVLIDPPSLKDVFDYADLRELRVHPTRRENLTHQRSSPEPSIRFDDFGESVFRSDFILSFERYTKKFRIVCRDDLRELIVRHEDEIMETLRE
>NC_010831.1|WP_012475542.1|2352551_2352899_+|YtxH-domain-containing-protein
MDNQDNYYKGLFYGAALGAAVGTVMGLLFAPDKGQETQRIITGKLRHAIDRATDKAAEFYDEDEQGGIYDNEAGQRSKEIIDNARDEARKILNDANSILKEIKTQAKGQSKPQDN
>NC_010831.1|WP_012475543.1|2352918_2353704_+|alpha/beta-hydrolase
MLSYTSVHLQTTAPPEHAVLLLHAFPLSAEMWKPQLSMFEKEGIPAIAPNVFGVNGSKTMPNWTFSDYIQELASLLSSLHIDKVTVVGLSMGGYQAFELWRTLPEKISSMVLCDTKAEQDNEAALAGRRDFISAVRARGAQEAVDRMLPNIMATETYTSKPELIETFKEIVNKQSGDVIADAMQAIASRSDSIDTLATINRPVTFITGMEDKLTPAHLAKSMHQHVSGSTLHLVTGAGHLSNMEQPEVFNRHLHDHLKKSF

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Crispr_ID: NC_010831_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010831_10

2399415-2399497

Orphan

Consensus_repeat	Method
CACTATTCAATAGTCATTATTCATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_010831_10

>merge|NC_010831|10|2399415-2399497|CRISPRCasFinder
CACTATTCAATAGTCATTATTCATTATTCATTATTCATTTCCCGACTTCCCCACTCCCCATCTTCCATTATTCAATATTCAAT

>NC_010831|10|10|2399415-2399497|CRISPRCasFinder
CACTATTCAATAGTCATTATTCATT	ATTCATTATTCATTTCCCGACTTCCCCACTCCC
CATCTTCCATTATTCAATATTCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010831.1\|WP_012475571.1\|2382022_2383225_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|99747
NC_010831.1\|WP_012475576.1\|2394989_2395691_+\|magnesium-protoporphyrin-IX-methyltransferase	unknown	unknown	gnl\|CDD\|236059
NC_010831.1\|WP_012475570.1\|2380779_2381775_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|223528
NC_010831.1\|WP_012475589.1\|2406862_2407096_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|226603
NC_010831.1\|WP_012475569.1\|2379550_2380597_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|273455
NC_010831.1\|WP_041471666.1\|2408851_2409736_-\|ATP-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234781
NC_010831.1\|WP_012475586.1\|2404995_2405949_-\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NC_010831.1\|WP_012475577.1\|2395859_2397500_+\|magnesium-protoporphyrin-IX-monomethyl-ester-anaerobic-oxidative-cyclase	unknown	unknown	gnl\|CDD\|131081
NC_010831.1\|WP_012475572.1\|2383489_2386027_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NC_010831.1\|WP_012475590.1\|2407273_2408428_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|213815
NC_010831.1\|WP_012475582.1\|2402933_2403569_+\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_012475584.1\|2403925_2404336_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NC_010831.1\|WP_012475573.1\|2386248_2390058_+\|magnesium-chelatase-subunit-H	unknown	unknown	gnl\|CDD\|273933
NC_010831.1\|WP_012475581.1\|2401124_2402498_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NC_010831.1\|WP_012475579.1\|2398141_2399044_-\|DUF4438-domain-containing-protein	unknown	unknown	gnl\|CDD\|379630
NC_010831.1\|WP_012475585.1\|2404430_2404871_+\|DUF937-domain-containing-protein	unknown	unknown	gnl\|CDD\|226276
NC_010831.1\|WP_012475575.1\|2391115_2394949_+\|magnesium-chelatase-subunit-H	unknown	unknown	gnl\|CDD\|237117
NC_010831.1\|WP_012475588.1\|2406470_2406866_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350220
NC_010831.1\|WP_041471665.1\|2399523_2400783_-\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|379065
NC_010831.1\|WP_012475578.1\|2397561_2397981_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107221

Protein	Function_ID	Function_description	E-value
NC_010831.1\|WP_012475571.1\|2382022_2383225_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|99747	cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.	3.56902e-129
NC_010831.1\|WP_012475576.1\|2394989_2395691_+\|magnesium-protoporphyrin-IX-methyltransferase	gnl\|CDD\|236059	PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated.	2.79591e-135
NC_010831.1\|WP_012475570.1\|2380779_2381775_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	9.66652e-52
NC_010831.1\|WP_012475589.1\|2406862_2407096_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	2.76456e-08
NC_010831.1\|WP_012475569.1\|2379550_2380597_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|273455	TIGR01128, DNA_polymerase_III_subunit_delta, DNA polymerase III, delta subunit. DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair].	3.16403e-39
NC_010831.1\|WP_041471666.1\|2408851_2409736_-\|ATP-phosphoribosyltransferase	gnl\|CDD\|234781	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed.	5.73764e-143
NC_010831.1\|WP_012475586.1\|2404995_2405949_-\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	3.91825e-94
NC_010831.1\|WP_012475577.1\|2395859_2397500_+\|magnesium-protoporphyrin-IX-monomethyl-ester-anaerobic-oxidative-cyclase	gnl\|CDD\|131081	TIGR02026, BchE, magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model represents the cobalamin-dependent oxidative cyclase, a radical SAM enzyme responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.	0
NC_010831.1\|WP_012475572.1\|2383489_2386027_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.16308e-70
NC_010831.1\|WP_012475590.1\|2407273_2408428_-\|glycosyltransferase	gnl\|CDD\|213815	TIGR03469, HpnB, hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.	6.82614e-53
NC_010831.1\|WP_012475584.1\|2403925_2404336_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	2.67859e-64
NC_010831.1\|WP_012475573.1\|2386248_2390058_+\|magnesium-chelatase-subunit-H	gnl\|CDD\|273933	TIGR02025, Magnesium-chelatase_subunit_H, magnesium chelatase, H subunit. This model represents the H subunit of the magnesium chelatase complex responsible for magnesium insertion into the protoporphyrin IX ring in the biosynthesis of both chlorophyll and bacteriochlorophyll. In chlorophyll-utilizing species, this gene is known as ChlH, while in bacteriochlorophyll-utilizing spoecies it is called BchH. Subunit H is the largest (~140kDa) of the three subunits (the others being BchD/ChlD and BchI/ChlI), and is known to bind protoporphyrin IX. Subunit H is homologous to the CobN subunit of cobaltochelatase and by anology with that enzyme, subunit H is believed to also bind the magnesium ion which is inserted into the ring. In conjunction with the hydrolysis of ATP by subunits I and D, a conformation change is believed to happen in subunit H causing the magnesium ion insertion into the distorted protoporphyrin ring. [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll].	0
NC_010831.1\|WP_012475581.1\|2401124_2402498_+\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	7.75691e-45
NC_010831.1\|WP_012475579.1\|2398141_2399044_-\|DUF4438-domain-containing-protein	gnl\|CDD\|379630	pfam14505, DUF4438, Domain of unknown function (DUF4438).	4.2627e-164
NC_010831.1\|WP_012475585.1\|2404430_2404871_+\|DUF937-domain-containing-protein	gnl\|CDD\|226276	COG3753, COG3753, Uncharacterized protein conserved in bacteria [Function unknown].	2.44678e-13
NC_010831.1\|WP_012475575.1\|2391115_2394949_+\|magnesium-chelatase-subunit-H	gnl\|CDD\|237117	PRK12493, PRK12493, magnesium chelatase subunit H; Provisional.	0
NC_010831.1\|WP_012475588.1\|2406470_2406866_-\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350220	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Synechocystis sp. (strain PCC 6803) Sll0205 protein and other uncharacterized homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.74225e-34
NC_010831.1\|WP_041471665.1\|2399523_2400783_-\|MgtC/SapB-family-protein	gnl\|CDD\|379065	pfam13194, DUF4010, Domain of unknown function (DUF4010). This is a family of putative membrane proteins found in archaea and bacteria. It is sometimes found C terminal to pfam02308.	1.12318e-54
NC_010831.1\|WP_012475578.1\|2397561_2397981_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107221	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.	1.20159e-29

>NC_010831.1|WP_012475579.1|2398141_2399044_-|DUF4438-domain-containing-protein
MLKTNEKQLVEFLLQCQPGPPKSRPSWSVDHQGEPFLLPSIGGITLNVQAGDSAFGLAGDHVEPGVSCTADTQKPFDHPNNSVQMYSCAGNTATIVSGEAKGEKGVVLGHHGGSEHVIVDFPRKVKEKLIYSDTIMIHAIGQGLRLLDFPEIVPFNLSPALLKRMKIRCVGDDVLEVPVTTIVPAACMGSGIGASHVAKGDYDIMTSDELTVSEYGLDKIRFGDFVALRDHDNRYGRAYRQGAVSIGVVVHSDCRVAGHGPGVTTVLTCASSLIKPVIDPAANIADRLGIGTALKTSKKK
>NC_010831.1|WP_012475578.1|2397561_2397981_-|Hsp20/alpha-crystallin-family-protein
MALRLYGRDPLKMFENVFNDTVSPFVTSMVAPSFKVDVSEDEQAIYIDADMPGMNKEDVKISMDEDVLTISAERTHEEEEKKKDYHRVERSYGSMTRSFSLGENVDLDNVDATYENGELRVVVMKKEPTEKKAKEITVK
>NC_010831.1|WP_012475577.1|2395859_2397500_+|magnesium-protoporphyrin-IX-monomethyl-ester-anaerobic-oxidative-cyclase
MKILMVQPNYHSGGAEIAGNWTPSWVAYIGGALKKAGYSQIRFIDAMADDLPDETLETIIRENKPDVVMATNITPSIFKAQDIMKIAKKVDPKIRTIMGGIHSTFMYPQVLSEAPETDYVIRGEGEEIAVNLIKAIDAGTDKQDRENITGIAYVNDEGEVHATTAHPVIEDLDDLTPDWSLYDWDKYIYTPLNCRLAVPNFARGCPFTCTFCSQWQFWRRYRARSPKHFVDEIEILVKKYNVGFFILADEEPTINKQKFVSLCQELIDRKLDVTWGINTRVTDIMRDADLLPFFRKAGLVHVSLGTEAASQMNLNRFRKETTIEENKLAIKLLQKNGIVAEAQFVMGLEHETPETIEETYQLCKDWDPDMANWTIYTPWPFSDLFKELGDRVEVRDYSRYNFVSPIIKPDNMEREDVLKGVLKSYGRFYARKTFFGYPWIKDPYVRKYMLGCLKAFAKTTLTKRFYDIDRVKTKNRKIEIDLGFDKSRILTQDEVKNLKEKRPEMVADMSFGLKEAGYQREHDEHDWDEFDESTIKDRNSSTVRNC
>NC_010831.1|WP_012475576.1|2394989_2395691_+|magnesium-protoporphyrin-IX-methyltransferase
MSNPSSFNAKEHQNMLRSYFNGNGFNRWSSIYGNEKLSTVRTTVRQGHAVMMDKAFEWLQQLNLPEDATILDAGCGTGLFSVRLAGNGYHVKAVDIAAQMVNKSREEATAKGLQEKIDFEVNTIEEVKGMYDAVVCFDVLIHYPAEGFMEAFKNLSNLTKGPIIFTYAPYNKILALQHWIGGFFPKKERRTTIQMITDENMNKAMEKNRMFVKSRQKISFGFYHTMLMHAERK
>NC_010831.1|WP_012475575.1|2391115_2394949_+|magnesium-chelatase-subunit-H
MRFLFLTMESTNNRALKNAAAVLNQEYDCRLEVMIFNLGLNKEDEVWRNLQQTVSDVDFIFGSMLFSEEIVRPLEKLLSSAACPVCIITSNPALIRQTRLGRFNLLRYDDGEKKKSVFRNLAAKLKPGDKQSESHRQLSLVRNISKVLKHIPGKSRDMHTFISAHQFWLNGSDENMKHFLCLLIDRYGASFTGRLPQKDPIFYPDTALCHPDASEAFYSAALFRKWLGTRNNAEHNGQVAILAMRSTVLSKNMLHIEHLLRSLESRGLDAYIAYSGGLDFRSAINSFFGNTHEGRLSPDLIINATGFSLVGGPAENKAAEATEALKKISIPYINIVPLSFQSIQQWQSGNLGLTPLQTALSVAIPELDGAIEPHVYAGAEENSDKTIPLPAETERIAERVRKHVDLRRKAPSKKQIAIVLFNFPPNLGNAGTAAFLDVFQSLFVLMREMRQTGYDITLPESVEDLKAALLEGNRDLFGTDGNVAEHLLVDEYRRIFPKYHEIETHWGNAPGELLNDGNRFHILGKTFGNVFIGQQPGFGYERDPMRLLMAKDASPNHAFAAFYAWLEHIWKADAVVHFGTHGALEFMPGKQVGLGASCWPKHLIGSMPNFYYYCVNNPSEGAIAKRRGFATLVSYLAPPLEHAGLYKELRQLRDLIENYHQTPAQEILEEIGSLADTLDLNTDREHLPIEQYLTALNRDLYKIEERMIPLGLHVIGKNPTPENLVDQLTLLITHPVAALQNMSLPEYICKVRKRDYSQIVNQNTNGSEKEREWRDLLHISRETVRHFIGTLPGAEETQYDIRSILEASFKVRISAAEHYLHRTASIRPGHFSGLWELLQHILIAMISNREIPGMLDALGGRYIEPSPGNDLLRNHNIVPTGRNMHSLDPFSIPSLPAQKRGKQSAEELLYLYREESGCLPESIAIVLWGTDNLKSDGEGIAQALALIGARPKTDELGKVSDVELIPYDELGRARIDVVITVSGIFRDLLSHQISLLDKAVRLAAAADEPETVNFIRRNVLREAEEQGVSPEHAANRIFSNAPGSYGANVNHLVESSSWENDSELSETFINRKCFSFNAGGSWEESPEILTSALRNVTLTYQNIDSYEIGISDIDHYYEYLGGVSKSVELISHSKPKVMVGDVNGFGKNQKICSLEKMVALEARTKLLNPKWYQSMLDHGYEGVREIESHLSNTYGWSATASAVKDWTYTAFNETFLRDREMLEQLKSHNIHATLSMTRRLLEANSRGFWKTDKETIEELQELYSELENSMEGTHSVP
>NC_010831.1|WP_012475573.1|2386248_2390058_+|magnesium-chelatase-subunit-H
MQSKIKIAAVVGMEQCNQRVWREVSDKISRYAELTQWTDQDLEHQNPEAAEAIRNADCVFTTLIQFKGQSDWLKEQIEQSNVRTVFAYESMPEVMQMTRVGNYVVSGDGSGMPDIVKKVAKMLVKGRDEDALYGYMKLLKIMRTMLPLIPKKAKDFKNWMQVYTYWMHPTAENLASMFSYIMSEYFEVSVKVEKVVEVPTMGLYHPEAPDYFKDLNHYTKWNKKRDKKSKDKHNIGLIFFRKHLLQEKEYIDNTIRAIEAKGLNVLPVFVMGVEGHVAAREWYVNADLDMLINMMGFGFVGGPAGATTPGASAAARDEILTSINAPYVVSQPLFIQDFNSWKTEGVVPLQSAMTYSLPEMDGAVCPVVLGAVKDGKLQTVPDRLERLSGLASKYSELRHTKNKDKKVAFVVYDYPPGMGRKASAALLDVPKSIYKILQKLDAEGYNVGTLPDSPEELLSMLDKATDHEVQAHEPDAFGIDRETYQDITSIRERERIEERWGGFPGDIAPLGSERVFIGGLTLGNIFIGVQPRLGVQGDPMRLLFDKENTPHHQYISFYRWISRTFSAHAMVHVGMHGTVEWMPGLQLGVTGDCWSDALLGEVPHLYIYPVNNPSEANIAKRRGYATMISHNIPPLARAGLYKELPGFKDLLNDYRERDLSKVADPEAEEVIIEKAEQLNLTDDCPRIEGENFSDYLSRLYTYLMELEGKLISNALHIFGETPPFENQLTTITEYLKVRGNEASLPSVILQTIGESATYGDYASLATRARKGDPKALAVRERVDEHTKDFIEQTIFTNNGNPAAVFKVLTGEAKITAEIAESVNTSLREGAALKHALEDNGNEMSALLSGLRGEYIPSGPGGDIVRDGASILPTGRNMHAIDPWRIPSELAFKRGKQIAETIIARHIEENNGDYPETIAQVLWGLDTIKSKGEAVSVIINLVGAEPAYDAQGKISHYALVPLETLGRPRVDVLIQISSIFRDTFGVLVDLLDKMVKDAAKADEPVEMNNIKKHVDESVAKGVEFEAATSRLFTQAPGSYGSMVEELIEDSAWESEEDLDNMFIKRTSFAYGGNRYGDQQPEVLENLLGTVDRVVQQVDSAEYGISDIDRYFSSSGSLQLSARRRNTKGGDVKLNYVETFTADVKVDDADKALKVEFRTKLLNPKWFESMIDQGHTGATEISNRFTYMLGWDAVTKGVDDWVYKKAAETYAFNEEMRERLTQVNPQATLNIVGRMLEANGRGMWNADQETIDHLQTIYADLEDRLEGMLDD
>NC_010831.1|WP_012475572.1|2383489_2386027_+|TonB-dependent-receptor
MDTKHYQAFPRVRLLLAVFLLTIMLTPLPAWAASPGSVKGTITDKTDGEGIIGASAMLENTTLGSASDVEGNYTISNIPAGTYRLKVNAIGYAPFFQTISVKTGETATINPQLEQTTVMASEIVVGAALYEQDRLEVPVTVSVVTDEKIKEEPNPTLDQVVENVPGVVVNRAGGYGSSTVQIRGSNTFQGGAIGTRVQGLYDGFPINTPVTGEVVWTNVNMNAADKVEVLKGAAATLYGSGAMGGVINVFGSLPDKFEVKAGASGGFYDDPPSSDKSEYYKDNTPWFWNTYVGIGDKRGDLNYNLLYTHADDDGYKETSQSLLNDVKLKARYDIDANQYIQLSSYYNATEGGYPTTWSFDNLILAETLVPHPEYAYDATTITSFAPWFPPTGITTPKSVYTDDTIERKNSLVGLNYVNLFSDDLSLDTRLYYTYNSSRINYNNTDADQTYATGVTREPGEFNQDKSNRYGAGVKLDFRASDQHRLLFGIDGNIVDVQSTQYTAELPAKNEFNDIQEKNLALFVQDEFKMTDKLTALLSVRYDWSGIDADEVSYVDYSLPVTVFVPGVGPVNTYPFTSTAEIENSSVDAISPRVALNYKATDDMSFRASWGRSFRAPTLAERFVRDAGLWGGNPNPALDKESMTAYEIGMYKVFSDRVSFDIAAYMNNYDNLIESVFLFNSADERYFFFENFRKARIWGIETSLNLKPVDELSLNLGYSYMNAKIVDYEPNVPPISIDNNPDPEWLPMRPEHTASISATWKATDRLTLNTTGRYVSEYKAVNAYTDPDGENYPGGFIVFNAGGKYKITDNLTGSFLCRNIANEQYEEAEWYRAPGRSFLLGLDFVY
>NC_010831.1|WP_012475571.1|2382022_2383225_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MNTRKDLFKKCYDFTLADEVKALGIYPFFHPIEETEGPVVSFGSRKLIMAGSNNYLGLTADERVKEASISAIRKYGTSCSGSRYMTGTVNLHLELEEKLAEYFEKERCLLFSTGYQTGQGVIPTLVQRGEYVICDKDNHASLVAASIMAVGQSAKFVRFAHNSMEDLERVLQTIPDDAGKLIVADGVFSVSGEIVELPRLVELAKEYGARILIDDAHAVGVIGRNGRGTPSEFNLVDQVDLMMGTFSKTFGSLGGYVVGEHDVIDFIKHNASSLIFSASPTPASVAAVLTSLEILKNEPELIERLIVNTDYVRQGLAAAGFKLMTSRTAIVSVIIGDQMKTMVFWKKLFDAGVYVNAFIRPGVMPGFEALRTSFMATHEKEHLDKVIMEFNTIGKELEII
>NC_010831.1|WP_012475570.1|2380779_2381775_-|NAD-dependent-epimerase/dehydratase-family-protein
MGRNILVTGATGFIGAVVVDYLKGRGDSVRVLTRPESNPGKALSMQVDILKGRYDDPVSLRKAVEGMDMVFHLAGVTKSVDEKGFYDGNVLPVKNLLETVLQVNPGLKRFLLVSSLAAAGPADNPDPGSREEDDSKPVSVYGESKLEAEKICLSFRDRLPVTIVRPPAVYGPGDRDVLQFIRMLQKGLVLGAGDVKKQRLSLVHVDDLVRGMVMATESPAGRGEIYYITSPKGYSWEELSAAAARELGVKHMLRISLPKSLMQMLGYVAGSISSVTGRSGFLNPDKVSEMVQDYWVCSPRKAEKQLGFTAAVSLEDGMHTTIAWYREKGWL
>NC_010831.1|WP_012475569.1|2379550_2380597_+|DNA-polymerase-III-subunit-delta
MKKLQKDIASGNIAPIYFFHGPESFMKEELTDLVRKNTFPAEEDAAVNTTVLYGQDVTPGEIVSMASEFPMFTARKLMIVKQFDKFKKQGSRDKQKLHIDQFIRYTNSPALSTILILDADQIDKRDLQKAPFRELQPFRHDFPLVTNPDIFASDRASLYGWEFEPEALKAFSAYIQPSSREIAREVEKLVMYASSKSNEKRITGADVFECVGISKQYNVFELEKALAGKNVRLCSGISLMIMDREGQKEGLMNIVRYLTTFYMRIWKLHSPGSRQLPLSETAKLLGMFGKQEYFAKNYLNYASRFSLKDTENAILSLHQTDAALKGLETYPDEKYLLLRLMQQLLSQK
>NC_010831.1|WP_041471665.1|2399523_2400783_-|MgtC/SapB-family-protein
MDLSVWQILGISLGLGLLVGLQREWSKAEGAGIRTYPMITVFGTVCAMLAERFGGGILLGGIIALGAMMVVMKIMMNINLPSSEHPHAGPTTGIAALLMYAVGAMLAMGSIVPAMAIGGGVAVLLQWKQPLHGFVKRIGNDDMQAIFRLVLLAMVVLPVLPDKNYGPYGVLNPSHIWMMVVLIVGISVGSYLVARFMGAKAGSLLGGFLGGLISSTATTISYARRSKTAPGTSSLAAMVIMIASSIVFIRVTFEIAVVAPGVLPYILPQFSVMFLFMALIAAVAWFFSRSSGKELPEAEDPSDLGAAVAFGALYALVLVAVAAAKEYFGDQGLYVVAALSGLTDMDAITLSTARLIEAERIEADTGWRMMMLGALSNILFKAGAVAVLGERKLFVSIALLFGLSLAGGAALLWLWPYVG
>NC_010831.1|WP_012475581.1|2401124_2402498_+|M23-family-metallopeptidase
MKHVKHQVSEYLERFFKLLHTKKHAVHITAVTISSVVLLTGLFNPVVSSLFNSYEDELGSTGEEELVTIEDEGSQYSNLIQESIIQKGESLYSILQHQGLSANDIHDITQQLKGSFSIKNFRPGKPYLIEKDPRSEFLCFTYQQSPSTILHVQKNPETYDFNIWQETFESQNRTAALAGTISSTLSAELQQQGRYALISQLQKLFAYKVNFKRDIQPGTTYNVLFEEEWVGNECVGIGKILAAEIYTGKTPATAYRFTDSKGNTGYYDSKGKSLKRSNSLFVKPCNYSRISSRFGYRTHPVLRRRHFHGGIDLAAPRGTPVYAAADGKIRFRGRKGAAGNMVTIAHPNGYHTKYLHLSRFSANARYGSRVKQGQVIGYVGSTGRSTGPHLDFRVIRNGKPQNPLIALKAVCEIKGVPKAEMENFQAQISLFRSQLENSDILVAGISKTSSQTASALN
>NC_010831.1|WP_012475582.1|2402933_2403569_+|hypothetical-protein
MKTINTFKSILLSSAILAASALPMNTAAANPEDISGASSSGTAKVSATLPEFIILHYYSAVELNFETPSSETIDEGGNAMNVAWSGIVNGNDELKPNDLKDAKLELDKDLVTVTLPDVWAVRGFAPNGKATVSIEIPEGGDELKQDKSVIAMSNMNVTQGKNAGSSLDVELNGIAKSRATTGGVTLDLNFMQTTRSGEHIGGLYKITAKTI
>NC_010831.1|WP_012475584.1|2403925_2404336_-|aminoacyl-tRNA-hydrolase
MLISHTITIDDSEIELLAIRSQGAGGQNVNKVATAIHLRFDIHASSLPGFCKQKLLTLHDRRITKDGVIIIKAQEHRSQEKNRQEALDRLKAIIQNATTVRKARKRTRPTGSSREKRLEGKARRGRIKVLRKKVDD
>NC_010831.1|WP_012475585.1|2404430_2404871_+|DUF937-domain-containing-protein
MDLKDLLEIGASVIQNNSDDATTSLDTDQLSSALGSLFGGKENKLDLGTVLGKMKNSGLDDIAASWLGNGKNSSISGEAIKNILGSDKIAGFASALGLSEKSAETAIADALPEMVDKSSPEGSLLENLIDNSGGLDGLIGLARKFF
>NC_010831.1|WP_012475586.1|2404995_2405949_-|WD40-repeat-domain-containing-protein
MGLLSKLFGKKEEEELKLPQVKEDEALIKTFEGHEDRVLGVRFSPDGKKLVSGSFDEKVMLWDVETGTILHTMSGHSTWVKCVDYSPDGDKVASGSIDSTVRIWDVETGKSLHECKGHDTEVRMVAFSPDGKTLASCSRDTTIKLWDVESGKELKTLTGHTSYIECVAFSHDGKKLVSCGEEPVVRIWDVASGKNTANYKTRDRHTYSVSFSPDSSLIILCGRDAMVKILDAATGDIKHIMEGHHDGVRSVRFSPDGNKAASVANDESVRLWDVESGKEIHSYRGHVLEVQSVDISPDGTMIVSGSDDRKIKFWKMK
>NC_010831.1|WP_012475588.1|2406470_2406866_-|type-II-toxin-antitoxin-system-VapC-family-toxin
MITVDTHVILWDALKPEMLSGKAKRALAEANRTDGIFFCSISLWEIAMLIRKKRIEISVPYRDFVDLLLSSNRYFFQEITPEIAYLSTTLPDTINGDPADRIIASSSLITKTSLITADENLRQSELLQTIW
>NC_010831.1|WP_012475589.1|2406862_2407096_-|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MGTIAVSELRANLKKVMRRVERGESLEITSMGKVVALLVPTENKQKKAREKLNEIAGKAVLHDVLSPLDVPWEAEKQ
>NC_010831.1|WP_012475590.1|2407273_2408428_-|glycosyltransferase
MLVYQLTILLLLLAFLAILLWNLRALPELPRQGAQTDHPFVSVLVPARNEAHNIERCISSLLGQNYPNFEVVVLNDASTDRTLELLESLRQADTSSRLRIIHGAPLPENWHGKAWACDQLGREAAGDMLLFTDADTSHAPECLSRAVAAMQESGADMLSMMPHQELKSFWERLIVPLIYFILLCYLPVKLVYAMASPVLCFANGQFILFRRKMYSMIGGHGAVSSDLVEDVWLCKAVKKKGGKVASYNGMETVSCRMYRNLSEVWDGFSKNLFAGLGYNTAGLFVLMLITVLVYIAPYGFVITSVATGTYSTVYFLLPLLQISIALLCRLLIAGRFSQPLSGALLHVFSQMALLGIAANSFYLVTFGKGSPWKGRRYNFSGKKV
>NC_010831.1|WP_041471666.1|2408851_2409736_-|ATP-phosphoribosyltransferase
MSVSENILKVGLPKGSLQDSTLELFARAGFHFSVKSRSYFPSIDDDELEAILIRAQEMAHYVELGAFDVGLTGKDWIIETDADVVEVSDLVYSKASMRPVRWVLAVPESSSIQSVKDLEGKHIATEVVGITNKYLEENGVSAHVEFSWGATEVKPPELADAIVEVTETGSSLRANKLRIVDVLLESNTKLIANKDSWNDPWKREKIENMAMLLQGAINAQGKVGLKMNAPKASLAKITTLIPALRQPTVSHLADENWVALEVIVEEKVVRSVIPDLKRAGAEGIFEYSISKLID

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Crispr_ID: NC_010831_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_010831_11

2492269-2492695

Unclear

I-A,II-B,III-A

Consensus_repeat	Method
GTTTCAATTCTCCATGAGTGCGATTAGAT	CRISPRCasFinder
GTTTCAATTCTCCATGAGTGCGATTAGAT	CRT
GTTTCAATTCTCCATGAGTGCGATTAGAT	PILER-CR

6 spacers

cas2

The CRISPR arrays of NC_010831_11

>merge|NC_010831|11|2492269-2492695|CRISPRCasFinder,CRT,PILER-CR
TCCCACACACTCCATGAGTGCGATTAGATCGAGAAAAACAGAGCGAATATGCTTGAGCGAGCAAAGTTGTTTCAATTCTCCATGAGTGCGATTAGATTCAGATGACAAAAATGAAATATAAAGGGTGAAAAAGGTTTCAATTCTCCATGAGTGCGATTAGATGCAGGCGGCTAATTACGGCAGTACTGTAGACCAGTAGTTTCAATTCTCCATGAGTGCGATTAGATATTCTGGTGATTTTATGGCTAAATTTCCCGGTTCTAAAGTTTCAATTCTCCATGAGTGCGATTAGATATAGTTGTAACGGATTCTTGTTTGCAAATACATCTGTGTTTCAATTCTCCATGAGTGCGATTAGATCCCCAATACTGTTTTGCTTATCCGCATTGAAATTTGTAGTTTCAATTCTCCATGAGTGCGATTAGAT

>NC_010831|11|11|2492269-2492695|CRISPRCasFinder
TCCCACACACTCCATGAGTGCGATTAGAT	CGAGAAAAACAGAGCGAATATGCTTGAGCGAGCAAAGTT
GTTTCAATTCTCCATGAGTGCGATTAGAT	TCAGATGACAAAAATGAAATATAAAGGGTGAAAAAG
GTTTCAATTCTCCATGAGTGCGATTAGAT	GCAGGCGGCTAATTACGGCAGTACTGTAGACCAGTA
GTTTCAATTCTCCATGAGTGCGATTAGAT	ATTCTGGTGATTTTATGGCTAAATTTCCCGGTTCTAAA
GTTTCAATTCTCCATGAGTGCGATTAGAT	ATAGTTGTAACGGATTCTTGTTTGCAAATACATCTGT
GTTTCAATTCTCCATGAGTGCGATTAGAT	CCCCAATACTGTTTTGCTTATCCGCATTGAAATTTGTA
GTTTCAATTCTCCATGAGTGCGATTAGAT

>NC_010831|11|4|2492269-2492695|CRT
TCCCACACACTCCATGAGTGCGATTAGAT	CGAGAAAAACAGAGCGAATATGCTTGAGCGAGCAAAGTT
GTTTCAATTCTCCATGAGTGCGATTAGAT	TCAGATGACAAAAATGAAATATAAAGGGTGAAAAAG
GTTTCAATTCTCCATGAGTGCGATTAGAT	GCAGGCGGCTAATTACGGCAGTACTGTAGACCAGTA
GTTTCAATTCTCCATGAGTGCGATTAGAT	ATTCTGGTGATTTTATGGCTAAATTTCCCGGTTCTAAA
GTTTCAATTCTCCATGAGTGCGATTAGAT	ATAGTTGTAACGGATTCTTGTTTGCAAATACATCTGT
GTTTCAATTCTCCATGAGTGCGATTAGAT	CCCCAATACTGTTTTGCTTATCCGCATTGAAATTTGTA
GTTTCAATTCTCCATGAGTGCGATTAGAT

>NC_010831|11|5|2492337-2492695|PILER-CR
GTTTCAATTCTCCATGAGTGCGATTAGAT	TCAGATGACAAAAATGAAATATAAAGGGTGAAAAAG
GTTTCAATTCTCCATGAGTGCGATTAGAT	GCAGGCGGCTAATTACGGCAGTACTGTAGACCAGTA
GTTTCAATTCTCCATGAGTGCGATTAGAT	ATTCTGGTGATTTTATGGCTAAATTTCCCGGTTCTAAA
GTTTCAATTCTCCATGAGTGCGATTAGAT	ATAGTTGTAACGGATTCTTGTTTGCAAATACATCTGT
GTTTCAATTCTCCATGAGTGCGATTAGAT	CCCCAATACTGTTTTGCTTATCCGCATTGAAATTTGTA
GTTTCAATTCTCCATGAGTGCGATTAGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_010831.1\|WP_012475694.1\|2502858_2505033_-\|NHLP-family-bacteriocin-export-ABC-transporter-peptidase/permease/ATPase-subunit	unknown	unknown	gnl\|CDD\|274788
NC_010831.1\|WP_012475684.1\|2489530_2490550_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238744
NC_010831.1\|WP_012475686.1\|2493217_2493745_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|225064
NC_010831.1\|WP_012475695.1\|2505029_2505365_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|367035
NC_010831.1\|WP_012475697.1\|2507562_2507847_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_010831.1\|WP_012475678.1\|2483147_2484575_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NC_010831.1\|WP_012475680.1\|2485510_2486830_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274529
NC_010831.1\|WP_012475692.1\|2499616_2500612_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376917
NC_010831.1\|WP_012475681.1\|2486887_2488528_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239202
NC_010831.1\|WP_012475696.1\|2506357_2507332_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376616
NC_010831.1\|WP_012475693.1\|2500630_2502856_-\|NHLP-bacteriocin-export-ABC-transporter-permease/ATPase-subunit	unknown	unknown	gnl\|CDD\|274789
NC_010831.1\|WP_012475676.1\|2479987_2480968_-\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048
NC_010831.1\|WP_012475682.1\|2488537_2488834_-\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_041471386.1\|2484784_2485360_-\|lipid-binding-SYLF-domain-containing-protein	unknown	unknown	gnl\|CDD\|211400
NC_010831.1\|WP_012475685.1\|2490963_2491959_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238744
NC_010831.1\|WP_012475677.1\|2482884_2483133_+\|exodeoxyribonuclease-VII-small-subunit	unknown	unknown	gnl\|CDD\|273536
NC_010831.1\|WP_012474914.1\|2481405_2482635_-\|ISAzo13-like-element-ISCph5-family-transposase	unknown	unknown	gnl\|CDD\|369439
NC_010831.1\|WP_012475687.1\|2493741_2494020_-\|DUF1778-domain-containing-protein	unknown	unknown	gnl\|CDD\|370057
NC_010831.1\|WP_012475688.1\|2494556_2495216_-\|hypothetical-protein	unknown	unknown	unknown
NC_010831.1\|WP_081433123.1\|2495336_2496374_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|377531

Protein	Function_ID	Function_description	E-value
NC_010831.1\|WP_012475694.1\|2502858_2505033_-\|NHLP-family-bacteriocin-export-ABC-transporter-peptidase/permease/ATPase-subunit	gnl\|CDD\|274788	TIGR03796, ABC_transporter_related, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products].	0
NC_010831.1\|WP_012475684.1\|2489530_2490550_-\|VWA-domain-containing-protein	gnl\|CDD\|238744	cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif.	8.75503e-25
NC_010831.1\|WP_012475686.1\|2493217_2493745_-\|acetyltransferase	gnl\|CDD\|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	0.00398961
NC_010831.1\|WP_012475695.1\|2505029_2505365_-\|TolC-family-protein	gnl\|CDD\|367035	pfam02321, OEP, Outer membrane efflux protein. The OEP family (Outer membrane efflux protein) form trimeric channels that allow export of a variety of substrates in Gram negative bacteria. Each member of this family is composed of two repeats. The trimeric channel is composed of a 12 stranded all beta sheet barrel that spans the outer membrane, and a long all helical barrel that spans the periplasm.	0.000309342
NC_010831.1\|WP_012475697.1\|2507562_2507847_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.54923e-28
NC_010831.1\|WP_012475678.1\|2483147_2484575_-\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NC_010831.1\|WP_012475680.1\|2485510_2486830_-\|AAA-family-ATPase	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NC_010831.1\|WP_012475692.1\|2499616_2500612_-\|hypothetical-protein	gnl\|CDD\|376917	pfam02743, dCache_1, Cache domain. Double cache domain 1 covers the last three strands from the membrane distal PAS-like domain, the first two strands of the membrane proximal domain, and the connecting elements between the two domains.	5.92984e-05
NC_010831.1\|WP_012475681.1\|2486887_2488528_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	7.79932e-142
NC_010831.1\|WP_012475696.1\|2506357_2507332_-\|hypothetical-protein	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	3.5575e-06
NC_010831.1\|WP_012475693.1\|2500630_2502856_-\|NHLP-bacteriocin-export-ABC-transporter-permease/ATPase-subunit	gnl\|CDD\|274789	TIGR03797, ABC_transporter_related, NHLM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes. [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products].	0
NC_010831.1\|WP_012475676.1\|2479987_2480968_-\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
NC_010831.1\|WP_041471386.1\|2484784_2485360_-\|lipid-binding-SYLF-domain-containing-protein	gnl\|CDD\|211400	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module. The SYLF domain is named after SH3YL1, Ysc84p/Lsb4p, Lsb3p, and plant FYVE, which are proteins that contain it. It is also called DUF500 and is highly conserved from bacteria to mammals. Some members, such as SH3YL1, Ysc84p, and Lsb3p, which represent the best characterized members of the family, also contain an SH3 domain, while family members from plants and stramenopiles also contain a FYVE zinc finger domain. Other members only contain a stand-alone SYLF domain. The SYLF domain of SH3YL1 binds phosphoinositides with high affinity, while the N-terminal SYLF domains of both Ysc84p and Lsb3p have been shown to bind and bundle actin filaments, as well as bind liposomes with high affinity.	2.81799e-24
NC_010831.1\|WP_012475687.1\|2493741_2494020_-\|DUF1778-domain-containing-protein	gnl\|CDD\|370057	pfam08681, DUF1778, Protein of unknown function (DUF1778). This is a family of uncharacterized proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA.	1.41765e-24
NC_010831.1\|WP_012475677.1\|2482884_2483133_+\|exodeoxyribonuclease-VII-small-subunit	gnl\|CDD\|273536	TIGR01280, xseB, exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA].	3.06245e-13
NC_010831.1\|WP_012474914.1\|2481405_2482635_-\|ISAzo13-like-element-ISCph5-family-transposase	gnl\|CDD\|369439	pfam07592, DDE_Tnp_ISAZ013, Rhodopirellula transposase DDE domain. These transposases are found in the planctomycete Rhodopirellula baltica, the cyanobacterium Nostoc, and the Gram-positive bacterium Streptomyces.	0
NC_010831.1\|WP_012475685.1\|2490963_2491959_-\|VWA-domain-containing-protein	gnl\|CDD\|238744	cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains. Members of this subgroup are bacterial in origin. They are typified by the presence of a MIDAS motif.	2.93596e-62
NC_010831.1\|WP_081433123.1\|2495336_2496374_+\|IS5-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	1.99403e-25

>NC_010831.1|WP_012475685.1|2490963_2491959_-|VWA-domain-containing-protein
MQELISTISSVELAQPWWLLLLLLLPVFWWLERRRVRGRKGMMFPGVSRLKAEGMAAGRWVRLPQWLMRSAIVLAVVATGRPQITRAVTEASEKGIDIVFALDISESMLEEDFEGSRLDAAKKIALRFIRERPQDRFGLVLFRGKSFTLCPLTLDHRLLGMLVRQVSVDAISDKGTAIGSAILVGTNRLRASVSKERVLLLLTDGEHNSGEVGPVTASEIAQSEGIRIYVIGVRNEEEAGSPESMDAEREGVDEQVLGTVAGMTGGRYFRASDENSLKDAFGEIDALERSRPDGPVREVRSELYSWLLLPALALLCAGLALGNTRFLKIPS
>NC_010831.1|WP_012475684.1|2489530_2490550_-|VWA-domain-containing-protein
MENICFAHPERLFLLLLLFPLAGVLGWGLWRKFQARKKLVDDNLSEHLLGGWERGREIAVRMMQFLSTGLLLIALCGPQLCSGEKMVRRDALDMVYLLDVSNSMLARDISPDRLERAREEIVRISRGIERGRRGLVAFAGSGVVQCPLTTDQQAFETMLGIASPDLIEAQGTDISAAMDVAQKMFSGSKTEEKVKAGGVAVLVSDGEAHEKGFSAAARKLKEKDVRLIVVGVGEEEPVVIPLQNGERKTGAVKLDAAGRPVLTSFRPDLLVKLAEDAGGIFLHSRESGFVSDEALNTIETIDRGKQWITEPRYREEIFHYFVLASVLFLLGAGVLNSKQ
>NC_010831.1|WP_012475682.1|2488537_2488834_-|hypothetical-protein
MEQPTQQKKSLEPMEKAKLAMRLVSNPDFESEIDAYVSGKDYDEHSVNYFKHQIAIQQKLQFESGKLLNTSGQIVSMVVGALANSLNNTVEATSRKNS
>NC_010831.1|WP_012475681.1|2486887_2488528_+|Rieske-2Fe-2S-domain-containing-protein
MYNNVKTKKVKVATWSRLEEKKPAYALVSGVDLVVIRFGEEVSVLYGRCLHRGALMADGSVSGHNLLCGVHRWDYRYDTGVSEYDNKEKLHKFTAWIDKKEDAVYTDEAEVIAWSRENPQAWDRESYQGLYADMKGGPEEPFNNYIHSLASTDPSTFSAHGPVSAMGVPLIELPRWEDIQLLTAQLYRSPLFDDAPVGTNLVIGPNARKPLELSIPLFVSDMSFGALSREIKIALSRGAELSETGICSGEGGMLEAERAENSRYFYELAPGEFGWDIEQVTRCQAFHFKAGQAAKTGTGGMLPAEKVSEEIATVRGVAPNTSAVSPSRFRKLVTPEDFQRIAEEVRQATGGIPVGCKLSAQHIERDIDFALEVGVDYIILDGRGGGTGASPDLLKNNIAVPTIPALARARKHLDTRGAGHVTLIITGGLRTESHFLKALALGADGIAIANAAIQAAGCLGMRACQNNNCPVGVATQDKKLRERIVIDRSAERLHNFLQNSVSMMKVMARACGHNHLRKFTTDDLVSWKQDMASLTGIRYGGVSGQE
>NC_010831.1|WP_012475680.1|2485510_2486830_-|AAA-family-ATPase
MQFDPNKFTVKAQEALQSAATLAGSRQHQQIEPVHLLHVMLSDRENIGFQIAQKLEVQVDTLLTVLDLELDRIAKVTGASATGQYISQDMGKVFDVALKEAEKLKDEYISSEHLFIAMSEEGGKVSTLMRDAGLERDAILRVMAGIRGSQRVTSQTAEDTYNSLKKYSRNLNDLVRKGKLDPVIGRDEEIRRVLQILSRRTKNNPVLIGEPGVGKTAIAEGIAQRIVAGDVPESLRSKQIAALDIASLVAGAKFRGEFEDRLKAVVKEVQDANGEVILFIDEMHLLVGAGSAEGAVDAANILKPALARGELRCIGATTLDEYRKHIEKDAALERRFQTVIVDQPSVEDTVSILRGLKEKYEIHHGVRILDSAIIAAAELSDRYISERFLPDKAIDLIDEASSRLRLEMDSDPEELDKVNREIRRLEIEREALKRELSSE
>NC_010831.1|WP_041471386.1|2484784_2485360_-|lipid-binding-SYLF-domain-containing-protein
MMNMKRNVCVLLLVLTAIAASPLSLFAGWNPHEENSAQQTIRLFQKTDPGLQIFFDEAYGYAVFPDVYKGGILLLGGARGEGYVYEQGTIIGRSSITQINVGPQLGGQAFSEIIFFRSQADLENFKKGNYELNAQASAVAVTAGVATNSEYSDGVAIFALPKSGLMAEASVGGQKFSFKPYYREVGSENDN
>NC_010831.1|WP_012475678.1|2483147_2484575_-|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MSYELVVGLEVHCQLNTNSKAFCGCSTEFGKPANTNVCPVCLALPGALPVLNRRVVEDAVKLGLATDCTVARQSILARKNYFYPDLPKGYQISQFEEPICSEGMVFVDTDEGRKNIRLVRIHIEEDAGKSIHDIGDDTFIDVNRCGVPLLEIVSYPDIRSAGEASSYLQKLRQIIKYLGISDGNMEEGSLRCDANVSVRLTGAEEYGTRTEIKNMNSFKNVEKAIEYEAKRHIDVLENGGTIFQETRLWDADRQETRSMRGKEFAHDYRYFPDPDLVPIEVDEEMLDRLKQELPELPEVRAERFVRETGIPAYDAGVLTSEREVADYFEKVVRACGDAKAASNWVMGEVLRTLKEKNIPVALFSVSPERLGGLLNLIGKGTISTTIAKQVFERMLETGDDAAAIVEKEGLAQISDTTEIETLVQDIIEANPGQVEQYRSGKTRIFGFFVGQCMKAMKGKANPVVVNEILKQKLDG
>NC_010831.1|WP_012475677.1|2482884_2483133_+|exodeoxyribonuclease-VII-small-subunit
MSQKKATIEELIARLEEITGEMEHPDTGIDTSIKLYEEGLKIAAICRKRLQDARQKIEIINPETSSGQEPEKKEDYGLFNAP
>NC_010831.1|WP_012474914.1|2481405_2482635_-|ISAzo13-like-element-ISCph5-family-transposase
MKTHDDEITLIRIKFEKIAWALDERMRRLFAAAEAFALGRGGVTKVSKATGVSRRAIHAGLDELAAEKLPVANQEKRIRKAGAGRKSITETDPGVLAALEKLVEPTTRGDPESPLRWTCKSLRTISDELRVQGYSVSYPKVGDLLQHELGYSLQANRKTLEGTAHPDRNAQFEFINREAAECMAGDNPVISVDTKKKELVGAYKNNGTNWRPQGEPESVKVHDFIDKELGRANPYGVYDVASNTGWVSVGTDHDTASFAVETIRRWWNTMGKPRYPKASKLMITADGGGSNGNRVRLWKLELQKLADEIHIPVHVAHLPPGTSKWNKIEHRLFSYISMNWRGQPLISHEVIINLIAGTTTKKGLKVHAELDDSLYPSGIKVSDKEFEAIRITRNEFHGEWNYRIDPHDS
>NC_010831.1|WP_012475676.1|2479987_2480968_-|GTPase-ObgE
MKFVDSAKIYVKGGNGGNGCMSFRREKYVPKGGPDGGDGGRGGHVYLRADGQMSTLLDFRYKKHYEAQRGVHGQGSKKNGKMGKDTVIPVPCGTVVRNAADGSLIADLTEEGEELLVAEGGKGGKGNPHFASSTRQAPRYAEPGGVGMALEIELELKLMADVGLVGFPNAGKSTLISSVSAARPKIADYPFTTLVPNLGIVQYREYSSFVMADIPGIIEGAAEGKGLGLQFLKHIERTKVLAVLIAADSEDIEAEYASLKREMERFGSGLLEKPRVVLITKMDIAPEDFSVPSFSDDAPVLMISSVTGEGIDVLKDELWSRVKSEG
>NC_010831.1|WP_012475686.1|2493217_2493745_-|acetyltransferase
MMLPAWHEEPIAKHHDRVAFDCGDAALNEFLQSHARKSHDKGGAKTFLAVSDNDGKKVYGYYCLAPASVSYRKTPDVVKRGLGRYEVPVYRLGRLAVDCSVQGQGLGGQLLLAAGRRCIQVATEVGGVALLIDAKNERVASWYAAYGAVPLLDAPLSLLLPLKTLHVALETAGKL
>NC_010831.1|WP_012475687.1|2493741_2494020_-|DUF1778-domain-containing-protein
MPQVPVEHNERLSLRIAAEEKSILMRAAALEHTHLTDFVISKVVSAARQVIERHERLELSERDSQHVLKLLEEPPAPNEKLTAAAFALPKQR
>NC_010831.1|WP_012475688.1|2494556_2495216_-|hypothetical-protein
MPFNEEAEQLAFAHNIKTISYKNMAFLRPLKSWIEQLERNYFSARNCLSRDNQKEFMRLFRGSLVGEENALLELQMYFRFSHDLDDVIKNLRDGFIKIRSSFIANSSAGAMMHFVGANKFPEELFTDTDQQLCQVYYESSNTDPDFYLVFSEDPQKRRFYFSPPVSLSQSVFFGAKEALNEKEKIFKTLHTARKIRGIMRSLVFELDTDWLEWARARVP
>NC_010831.1|WP_081433123.1|2495336_2496374_+|IS5-family-transposase
MNPLGLFDEHFLLERLTKLKDPLVKLNDHIDWKIFAPILDVVFNKPKNSNNVGRPPFDRLMMFKLMILQSLYNLSDDQMEYQITDRLSFKRFLSLKSSDRVPDSKTIWKFRETLIQEEVIEALFYRFNQALDDQSIFANTGQIVDASFVEVPKQRNTRDENKEVKAGKTPDTWKTKPNKLRQKDRDARWTKKNKMSFYGYKNHIKVDKGTKLISSYMVTDASVHDSQELETLIDKDNAGQKLYADSAYTGQEKSIEGCGMANEVQEKGSRYRALTETQKASNREKASHRARVEHIFGYLTNSMKAMYIRTIGYARATAKIGLTNLTYNMMRCTQLNKKVYNVFLG
>NC_010831.1|WP_012475692.1|2499616_2500612_-|hypothetical-protein
MNTMNIKQAMKKLSPRQIPAPVWYLAAVLAVMAGVVFTLQSGQSLDGAKKIIQLNMADVESTIQDYGKAMNTIRLESDAQAIAKAHAFAYMIDLRPSIIGDEQELERIRKMLDVDELYVSDKNGILVGSTIPSYIGYDMASSPQSKAFMLAIYYKDFELAQKPQPKSVDNTLFQYAGVARLDQPGIVQVGFKPERLERVMQTADIQRVAKEWRIGATGEVMIADFDGKILSTFDGRHLGESLTAYGFPEKAFNGSEGEFRATVQGESNFIMYRFVDRNLIIAAIPQSEIYGDRNKNLIIMLLVSIGAISLAVFVVSRQRGAIAEEADKKEV
>NC_010831.1|WP_012475693.1|2500630_2502856_-|NHLP-bacteriocin-export-ABC-transporter-permease/ATPase-subunit
MKDGQQETPAGKIPFSRRVMERSRFQQERYSGALKGLAGVMAEGGARVAPQVSDPLLASCLMVGEAAGIRITAPPTSSGPSHEDPLQSICRHSGVRARKVALRSDARWWEEENGPLLAFRSESRSPVALIPEPIGGYRLYDPAAGLHVKFEGAMAKEMDGGEAWVLYRPFPDKPLGGKEVLSFGIRGGGNDVAFTALYGVAGALLGLLTPILTGILFGTVIPQSSRSQLQQLALILMASVIAASGFDLARQIAVMRLQTRMDMHIQPALIDRLLNLPSTFFRKFSSGDLTMRVLGVSQIKEILSSAVLTALLGLLFGISNLFLLFYYSWQLALWALLMTTILVGLTAWISYRQLSLNKEMLGVQGKISGLLGNLLTGIAKIRITGTEKPAFAQWAGLFRKERELAFEAGGMQNILATTTASFPVVAMAVIIVSAGGMLTGANLDSGSFIAFTTAFTAFQTSLMQSALTIIASLNVVPLYERIKPVFEAVPEATEAQNQPDKLQGRIEVQGVDFRYESDSPQILHSVSLKADPGEFIALVGGSGSGKSTLLRLLLGFEKPDMGTVSYDGIDLASLNVQAVRRQMGVVMQNGQLQPGFVLQTIIGSTVLTVDDAWEAAKMAGIDEDIRNMPMGMYTVISEGSETISGGQKQRLLIAGALVRKPSIIFFDEATSALDNKTQEVVSKSLESLKSTRIVIAHRLSTIRNADRIYCLDQGRIVQEGTYEELMAVEGFFKELASRQIA
>NC_010831.1|WP_012475694.1|2502858_2505033_-|NHLP-family-bacteriocin-export-ABC-transporter-peptidase/permease/ATPase-subunit
MSFMLFPTKILWEEDRIKTPTVLQMEAVECGAASLGMILAYFGKYVPLEELRVECGVSRDGSKASSLIAAGKRYGLESKGARLDIDDLHRKPLPMILFWNMYHFVVFEGYRKGIYYINDPASGQRKVSAQEFSESYSGVALTFEKTDAFQPGGRPFSLAGALKKRMPGLERALTYIVLASLLLVIPGLVVPSFLRIFIDYVLVQGATDWLRPLLIGMLLTALLQGVLTWLKQYYLLRAETKLALTSSAKFFNHVFAMPMRFFTMRQAGEISNRVQLNDQVATLVAGDLTANALNFLLIAFYALLMFRYDTVLTLGAILIAVVNASALFYVSRKRVVLNQKFQQDYGKLMGTTFYGIKTIESLKASGSEPDFFARWSGLFANMVNGQQQLQVATVFLLALPPFLQSFGNIAILSVGGLRVMEGQLTMGMLIAFQSLLMSFLAPVNEMVTLGQKLQDAEGNMQRLDDVMDNDVELETDEDDDEEHQPLEGHIELRDITFGYNVLEAPLIENFSLKLEPGQRVALVGGSGSGKSTVSKLVAGLYEPWSGELLFDGIPRRQLPRRRVAASVGMVDQEISLFEGSIAENISMWDGTMLQGEIERAARDAAIDEVISSRTGGYQANLSEGGSNFSGGQRQRIEIARALASNPSILILDEATSALDPTTEKRIDENIRKRGCTCLIVAHRLSTIRDCDEIIVLEYGKVKERGTHQSLMALGGVYAGLIKTG
>NC_010831.1|WP_012475695.1|2505029_2505365_-|TolC-family-protein
MKSTVALAFAAVRNAADVYQLTRNSTGSYRRLKEGELRKFRMGMSDIFNLQTASNNLATAELQLLSAEQSFALAVLGLRRATGLLVDEEGGAATIQAANIFSVPLAKGGRR
>NC_010831.1|WP_012475696.1|2506357_2507332_-|hypothetical-protein
MPRGPRLDAPGTLHHVIIRGIGQGRIVSDDDDRSAFVNRMGTVAETTGTIIYAWALLDNHAHLLLKSGQMGLPTYMRKLLSWYAQYYNRRHNRSGHLFQNRYKSIICEEDAYFQKLIAYIHLNPLRAGLVNTLDELNSYPWSGQAAIVGKLRREWQDVDAVLKKFGDRAGTARRTYLSYLEEEAGKGRQPGLVGGGLVRSQGGWSVVKSLRKKGKQAQGDERILGSSEFVKTILDEAEEQVRLQVAGGEKRELVERDIEKACAEAGLSQNEFRSGRRMKPLPEIRNKLAVRFVREYGLSLAETARQLGITTSAVYQILRKQTNK
>NC_010831.1|WP_012475697.1|2507562_2507847_-|CRISPR-associated-endonuclease-Cas2
MHFILVTYDIENDRRRTKIHKILSNFGEPVQYSVFECFISEGDFEEMRKKLKKQMDPNHPDDSIRYYTLCRCCVEKVLVEGNRDFNIEGPFIIT

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	1369293-1369319	0	1.0
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2062952-2062978	0	1.0
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2072402-2072428	0	1.0
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2127491-2127517	0	1.0
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2131841-2131867	0	1.0
NC_010831_6	6.1\|2065219\|42\|NC_010831\|CRISPRCasFinder	2065219-2065260	42	NC_010831.1	1988354-1988395	0	1.0
NC_010831_6	6.1\|2065219\|42\|NC_010831\|CRISPRCasFinder	2065219-2065260	42	NC_010831.1	2062450-2062491	0	1.0
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	374015-374041	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	576257-576283	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	576528-576554	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	576799-576825	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	1874243-1874269	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	1988375-1988401	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2035242-2035268	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2042025-2042051	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2044969-2044995	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2060846-2060872	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2062471-2062497	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2070675-2070701	1	0.963
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2133272-2133298	1	0.963
NC_010831_6	6.1\|2065219\|42\|NC_010831\|CRISPRCasFinder	2065219-2065260	42	NC_010831.1	2062931-2062972	1	0.976
NC_010831_6	6.1\|2065219\|42\|NC_010831\|CRISPRCasFinder	2065219-2065260	42	NC_010831.1	2070654-2070695	1	0.976
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	1943786-1943812	2	0.926
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	1948495-1948521	2	0.926
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	1970347-1970373	2	0.926
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2151311-2151337	2	0.926
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2151551-2151577	2	0.926
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NC_010831.1	2650318-2650344	2	0.926
NC_010831_6	6.1\|2065219\|42\|NC_010831\|CRISPRCasFinder	2065219-2065260	42	NC_010831.1	1369299-1369340	2	0.952
NC_010831_6	6.1\|2065219\|42\|NC_010831\|CRISPRCasFinder	2065219-2065260	42	NC_010831.1	2042031-2042072	2	0.952
NC_010831_6	6.1\|2065219\|42\|NC_010831\|CRISPRCasFinder	2065219-2065260	42	NC_010831.1	2072381-2072422	2	0.952

1. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 1369293-1369319, mismatch: 0, identity: 1.0

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgttttgatttcacaggg	Protospacer
***************************

2. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2062952-2062978, mismatch: 0, identity: 1.0

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgttttgatttcacaggg	Protospacer
***************************

3. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2072402-2072428, mismatch: 0, identity: 1.0

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgttttgatttcacaggg	Protospacer
***************************

4. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2127491-2127517, mismatch: 0, identity: 1.0

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgttttgatttcacaggg	Protospacer
***************************

5. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2131841-2131867, mismatch: 0, identity: 1.0

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgttttgatttcacaggg	Protospacer
***************************

6. spacer 6.1|2065219|42|NC_010831|CRISPRCasFinder matches to position: 1988354-1988395, mismatch: 0, identity: 1.0

gccccccggaaagtcatgccgccctgtgaaatccaaacatct	CRISPR spacer
gccccccggaaagtcatgccgccctgtgaaatccaaacatct	Protospacer
******************************************

7. spacer 6.1|2065219|42|NC_010831|CRISPRCasFinder matches to position: 2062450-2062491, mismatch: 0, identity: 1.0

gccccccggaaagtcatgccgccctgtgaaatccaaacatct	CRISPR spacer
gccccccggaaagtcatgccgccctgtgaaatccaaacatct	Protospacer
******************************************

8. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 374015-374041, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttggatttcacaggg	Protospacer
************** ************

9. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 576257-576283, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttggatttcacaggg	Protospacer
************** ************

10. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 576528-576554, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttagatttcacaggg	Protospacer
************** ************

11. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 576799-576825, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttggatttcacaggg	Protospacer
************** ************

12. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 1874243-1874269, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttggatttcacaggg	Protospacer
************** ************

13. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 1988375-1988401, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttggatttcacaggg	Protospacer
************** ************

14. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2035242-2035268, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttggatttcacaggg	Protospacer
************** ************

15. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2042025-2042051, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttggatttcacaggg	Protospacer
************** ************

16. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2044969-2044995, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttggatttcacaggg	Protospacer
************** ************

17. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2060846-2060872, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgtaatagatgttttgatttcacaggg	Protospacer
** ************************

18. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2062471-2062497, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttggatttcacaggg	Protospacer
************** ************

19. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2070675-2070701, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttggatttcacaggg	Protospacer
************** ************

20. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2133272-2133298, mismatch: 1, identity: 0.963

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagatgtttggatttcacaggg	Protospacer
************** ************

21. spacer 6.1|2065219|42|NC_010831|CRISPRCasFinder matches to position: 2062931-2062972, mismatch: 1, identity: 0.976

gccccccggaaagtcatgccgccctgtgaaatccaaacatct	CRISPR spacer
gccccccggaaagtcatgccgccctgtgaaatcaaaacatct	Protospacer
********************************* ********

22. spacer 6.1|2065219|42|NC_010831|CRISPRCasFinder matches to position: 2070654-2070695, mismatch: 1, identity: 0.976

gccccccggaaagtcatgccgccctgtgaaatccaaacatct	CRISPR spacer
gccccccgaaaagtcatgccgccctgtgaaatccaaacatct	Protospacer
********.*********************************

23. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 1943786-1943812, mismatch: 2, identity: 0.926

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaataggtgtttggatttcacaggg	Protospacer
********.***** ************

24. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 1948495-1948521, mismatch: 2, identity: 0.926

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaataggtgtttggatttcacaggg	Protospacer
********.***** ************

25. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 1970347-1970373, mismatch: 2, identity: 0.926

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaatagaagtttggatttcacaggg	Protospacer
********* **** ************

26. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2151311-2151337, mismatch: 2, identity: 0.926

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaacagatgtttggatttcacaggg	Protospacer
*****.******** ************

27. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2151551-2151577, mismatch: 2, identity: 0.926

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgaaacagatgtttggatttcacaggg	Protospacer
*****.******** ************

28. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to position: 2650318-2650344, mismatch: 2, identity: 0.926

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tgatagagatgttttgatttcacaggg	Protospacer
*** * *********************

29. spacer 6.1|2065219|42|NC_010831|CRISPRCasFinder matches to position: 1369299-1369340, mismatch: 2, identity: 0.952

gccccccggaaagtcatgccgccctgtgaaatccaaacatct	CRISPR spacer
gccctccggaaagtcatgccgccctgtgaaatcaaaacatct	Protospacer
****.**************************** ********

30. spacer 6.1|2065219|42|NC_010831|CRISPRCasFinder matches to position: 2042031-2042072, mismatch: 2, identity: 0.952

gccccccggaaagtcatgccgccctgtgaaatccaaacatct	CRISPR spacer
gcccttcggaaagtcatgccgccctgtgaaatccaaacatct	Protospacer
****..************************************

31. spacer 6.1|2065219|42|NC_010831|CRISPRCasFinder matches to position: 2072381-2072422, mismatch: 2, identity: 0.952

gccccccggaaagtcatgccgccctgtgaaatccaaacatct	CRISPR spacer
gccctccggaaagtcatgccgccctgtgaaatcaaaacatct	Protospacer
****.**************************** ********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	AP014175	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C64A-MedDCM-OCT-S46-C99, * SEQUENCING IN PROGRESS *	19979-20005	5	0.815
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	AP014172	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C64A-MedDCM-OCT-S40-C38, * SEQUENCING IN PROGRESS *	19978-20004	5	0.815
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	AP014173	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C64A-MedDCM-OCT-S43-C103, * SEQUENCING IN PROGRESS *	15743-15769	5	0.815
NC_010831_3	3.1\|1368935\|27\|NC_010831\|CRISPRCasFinder	1368935-1368961	27	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	268981-269007	6	0.778
NC_010831_9	9.32\|2344564\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2344564-2344596	33	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	127036-127068	6	0.818
NC_010831_9	9.24\|2344077\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2344077-2344109	33	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	365005-365037	7	0.788
NC_010831_9	9.24\|2344077\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2344077-2344109	33	NZ_CP016290	Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence	485873-485905	7	0.788
NC_010831_9	9.30\|2344443\|32\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2344443-2344474	32	MT952005	Aeromonas phage BUCT551, complete genome	13218-13249	7	0.781
NC_010831_9	9.30\|2344443\|32\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2344443-2344474	32	MK838113	Aeromonas phage LAh_7, complete genome	12922-12953	7	0.781
NC_010831_9	9.30\|2344443\|32\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2344443-2344474	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	18348-18379	7	0.781
NC_010831_9	9.30\|2344443\|32\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2344443-2344474	32	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	863182-863213	7	0.781
NC_010831_9	9.40\|2345052\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2345052-2345084	33	AP014368	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C87, * SEQUENCING IN PROGRESS *	28662-28694	7	0.788
NC_010831_9	9.46\|2342797\|32\|NC_010831\|PILER-CR	2342797-2342828	32	MH617420	Microviridae sp. isolate ctda655, complete genome	849-880	7	0.781
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	KT887557	Pseudomonas phage phi1, complete genome	1479-1510	7	0.781
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448563	Streptococcus satellite phage Javan601, complete genome	6922-6954	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448571	Streptococcus satellite phage Javan609, complete genome	6922-6954	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448575	Streptococcus satellite phage Javan612, complete genome	6922-6954	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448567	Streptococcus satellite phage Javan605, complete genome	6922-6954	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448574	Streptococcus satellite phage Javan611, complete genome	6671-6703	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448577	Streptococcus satellite phage Javan614, complete genome	6605-6637	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448562	Streptococcus satellite phage Javan600, complete genome	6611-6643	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448573	Streptococcus satellite phage Javan610, complete genome	6980-7012	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448568	Streptococcus satellite phage Javan606, complete genome	7007-7039	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448576	Streptococcus satellite phage Javan613, complete genome	6851-6883	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448576	Streptococcus satellite phage Javan613, complete genome	10150-10182	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448570	Streptococcus satellite phage Javan608, complete genome	6979-7011	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448569	Streptococcus satellite phage Javan607, complete genome	7302-7334	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448569	Streptococcus satellite phage Javan607, complete genome	10601-10633	8	0.758
NC_010831_9	9.9\|2343162\|33\|NC_010831\|CRISPRCasFinder,CRT	2343162-2343194	33	MK448566	Streptococcus satellite phage Javan604, complete genome	6922-6954	8	0.758
NC_010831_9	9.30\|2344443\|32\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2344443-2344474	32	NZ_CP044987	Deinococcus sp. AJ005 plasmid p96k, complete sequence	47168-47199	8	0.75
NC_010831_9	9.32\|2344564\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2344564-2344596	33	NZ_CP021026	Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence	105171-105203	8	0.758
NC_010831_9	9.42\|2345174\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2345174-2345206	33	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	294373-294405	8	0.758
NC_010831_9	9.42\|2345174\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2345174-2345206	33	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	146639-146671	8	0.758
NC_010831_9	9.44\|2345296\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2345296-2345328	33	MN445185	Escherichia phage vB_EcoM_EC001, complete genome	139413-139445	8	0.758
NC_010831_9	9.44\|2345296\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2345296-2345328	33	LR535912	XXX	99963-99995	8	0.758
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MN693703	Marine virus AFVG_250M594, complete genome	60061-60092	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	NZ_CP013125	Pseudomonas mendocina S5.2 plasmid pPME5, complete sequence	123072-123103	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511008	Pseudomonas phage CF124, partial genome	15612-15643	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511008	Pseudomonas phage CF124, partial genome	21721-21752	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511013	Pseudomonas phage BR161, partial genome	28317-28348	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511013	Pseudomonas phage BR161, partial genome	34426-34457	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511002	Pseudomonas phage CF57, partial genome	28216-28247	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511002	Pseudomonas phage CF57, partial genome	34325-34356	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511009	Pseudomonas phage CF136, partial genome	28172-28203	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511009	Pseudomonas phage CF136, partial genome	34281-34312	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511003	Pseudomonas phage CF65, partial genome	28203-28234	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511003	Pseudomonas phage CF65, partial genome	34312-34343	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511005	Pseudomonas phage CF81, partial genome	28308-28339	8	0.75
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	MK511005	Pseudomonas phage CF81, partial genome	34417-34448	8	0.75
NC_010831_9	9.6\|2342979\|33\|NC_010831\|CRISPRCasFinder,CRT	2342979-2343011	33	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	185652-185684	9	0.727
NC_010831_9	9.6\|2342979\|33\|NC_010831\|CRISPRCasFinder,CRT	2342979-2343011	33	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	191314-191346	9	0.727
NC_010831_9	9.8\|2343101\|33\|NC_010831\|CRISPRCasFinder,CRT	2343101-2343133	33	NZ_CP030195	Salmonella enterica strain SA20080453 plasmid pSA20080453.1, complete sequence	1947-1979	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	374287-374319	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1367298-1367330	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1329479-1329511	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1433522-1433554	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1610755-1610787	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	369247-369279	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	932255-932287	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	987317-987349	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	715124-715156	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	619034-619066	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	1053323-1053355	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	250605-250637	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	593930-593962	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	646300-646332	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	372351-372383	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1485753-1485785	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	1262046-1262078	9	0.727
NC_010831_9	9.10\|2343223\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2343223-2343255	33	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1367305-1367337	9	0.727
NC_010831_9	9.34\|2344686\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2344686-2344718	33	LR134212	Klebsiella aerogenes strain NCTC418 genome assembly, plasmid: 3	11865-11897	9	0.727
NC_010831_9	9.46\|2342797\|32\|NC_010831\|PILER-CR	2342797-2342828	32	AP013974	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S24-C102, * SEQUENCING IN PROGRESS *	13995-14026	9	0.719
NC_010831_9	9.46\|2342797\|32\|NC_010831\|PILER-CR	2342797-2342828	32	AP013982	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S44-C91, * SEQUENCING IN PROGRESS *	5498-5529	9	0.719
NC_010831_9	9.46\|2342797\|32\|NC_010831\|PILER-CR	2342797-2342828	32	AP013528	Uncultured Mediterranean phage uvMED DNA, complete genome, group G3, isolate: uvMED-CGR-C7A-MedDCM-OCT-S41-C23	26355-26386	9	0.719
NC_010831_9	9.46\|2342797\|32\|NC_010831\|PILER-CR	2342797-2342828	32	AP013981	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S32-C55, * SEQUENCING IN PROGRESS *	12641-12672	9	0.719
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	CP021184	Sphingomonas wittichii DC-6 plasmid pDC03, complete sequence	23323-23354	9	0.719
NC_010831_9	9.49\|2342980\|32\|NC_010831\|PILER-CR	2342980-2343011	32	NZ_CP049159	Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence	191314-191345	9	0.719
NC_010831_9	9.49\|2342980\|32\|NC_010831\|PILER-CR	2342980-2343011	32	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	185653-185684	9	0.719
NC_010831_9	9.42\|2345174\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2345174-2345206	33	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	302866-302898	10	0.697
NC_010831_9	9.42\|2345174\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2345174-2345206	33	NZ_CP011450	Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence	40793-40825	10	0.697
NC_010831_9	9.42\|2345174\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2345174-2345206	33	NZ_CP018821	Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence	98163-98195	10	0.697
NC_010831_9	9.50\|2343041\|32\|NC_010831\|PILER-CR	2343041-2343072	32	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	284153-284184	10	0.688
NC_010831_9	9.41\|2345113\|33\|NC_010831\|CRISPRCasFinder,CRT,PILER-CR	2345113-2345145	33	NZ_CP029777	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence	182038-182070	11	0.667
NC_010831_9	9.46\|2342797\|32\|NC_010831\|PILER-CR	2342797-2342828	32	MK448908	Streptococcus phage Javan326, complete genome	9324-9355	11	0.656
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	NC_016644	Pseudomonas sp. MC1 plasmid KOPRI126573, complete sequence	9980-10011	11	0.656
NC_010831_9	9.47\|2342858\|32\|NC_010831\|PILER-CR	2342858-2342889	32	NC_007926	Pseudomonas putida plasmid NAH7, complete sequence	10034-10065	11	0.656

1. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to AP014175 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C64A-MedDCM-OCT-S46-C99, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.815

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tcaaatagatggtttgatatcacagtt	Protospacer
* ********* ****** ******

2. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to AP014172 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C64A-MedDCM-OCT-S40-C38, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.815

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tcaaatagatggtttgatatcacagtt	Protospacer
* ********* ****** ******

3. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to AP014173 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C64A-MedDCM-OCT-S43-C103, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 5, identity: 0.815

tgaaatagatgttttgatttcacaggg	CRISPR spacer
tcaaatagatggtttgatatcacagtt	Protospacer
* ********* ****** ******

4. spacer 3.1|1368935|27|NC_010831|CRISPRCasFinder matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 6, identity: 0.778

tgaaatagatgttttgatttcacaggg	CRISPR spacer
taaaatagatgttttgatttcgactga	Protospacer
*.*******************.   *.

5. spacer 9.32|2344564|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.818

ccgggaaaaaagatgtttccggaaaagcgatca-	CRISPR spacer
gagggaaaaaacatgtttccagaaaa-cgataaa	Protospacer
  ********* ********.***** **** *

6. spacer 9.24|2344077|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

cgttgtaacctatcgcgagagcgatttgcggcc	CRISPR spacer
cgttgtaaccaatggcgagagcgaagttctggc	Protospacer
********** ** **********  * * * *

7. spacer 9.24|2344077|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016290 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.788

cgttgtaacctatcgcgagagcgatttgcggcc	CRISPR spacer
cgttgtaaccaatggcgagagcgaagttctggc	Protospacer
********** ** **********  * * * *

8. spacer 9.30|2344443|32|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to MT952005 (Aeromonas phage BUCT551, complete genome) position: , mismatch: 7, identity: 0.781

ccgcctggcccgctttacgcgggctttaggcg	CRISPR spacer
ccgccaggcccgcttcacgcgggcttttttgt	Protospacer
***** *********.***********

9. spacer 9.30|2344443|32|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to MK838113 (Aeromonas phage LAh_7, complete genome) position: , mismatch: 7, identity: 0.781

ccgcctggcccgctttacgcgggctttaggcg	CRISPR spacer
ccgccaggcccgcttcacgcgggcttttttgt	Protospacer
***** *********.***********

10. spacer 9.30|2344443|32|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 7, identity: 0.781

ccgcctggcccgctttacgcgggctttaggcg	CRISPR spacer
catcctggcccgctttacgcagcctttccgct	Protospacer
*  *****************.* ****  **

11. spacer 9.30|2344443|32|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 7, identity: 0.781

ccgcctggcccgctttacgcgggctttaggcg	CRISPR spacer
catcctggcccgctttacgcagcctttccgct	Protospacer
*  *****************.* ****  **

12. spacer 9.40|2345052|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to AP014368 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S41-C87, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.788

caggacaacagagatgaactatcaagaggcatt	CRISPR spacer
cttgaccttagagatgaactatcaagaaacatt	Protospacer
*  ***  .******************..****

13. spacer 9.46|2342797|32|NC_010831|PILER-CR matches to MH617420 (Microviridae sp. isolate ctda655, complete genome) position: , mismatch: 7, identity: 0.781

-acttgtgcgtcaagatactttttaaccgtcaa	CRISPR spacer
aggttctgt-tcaagatactctttacccgtcaa	Protospacer
 . ** **. **********.**** *******

14. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to KT887557 (Pseudomonas phage phi1, complete genome) position: , mismatch: 7, identity: 0.781

gcctggcccgccattgcgcgggcttcgggcgt-	CRISPR spacer
cataggcccgccattgagcgggcttc-gtcgtc	Protospacer
  . ************ ********* * ***

15. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448563 (Streptococcus satellite phage Javan601, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

16. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448571 (Streptococcus satellite phage Javan609, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

17. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448575 (Streptococcus satellite phage Javan612, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

18. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448567 (Streptococcus satellite phage Javan605, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

19. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448574 (Streptococcus satellite phage Javan611, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

20. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448577 (Streptococcus satellite phage Javan614, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

21. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448562 (Streptococcus satellite phage Javan600, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

22. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448573 (Streptococcus satellite phage Javan610, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

23. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448568 (Streptococcus satellite phage Javan606, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

24. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448576 (Streptococcus satellite phage Javan613, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

25. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448576 (Streptococcus satellite phage Javan613, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

26. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448570 (Streptococcus satellite phage Javan608, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

27. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448569 (Streptococcus satellite phage Javan607, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

28. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448569 (Streptococcus satellite phage Javan607, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

29. spacer 9.9|2343162|33|NC_010831|CRISPRCasFinder,CRT matches to MK448566 (Streptococcus satellite phage Javan604, complete genome) position: , mismatch: 8, identity: 0.758

caaaaggaacaacatcatgacacttaccgaact	CRISPR spacer
gtaaaggagaaacatcatgacacttaagaaaca	Protospacer
  ******. ****************  .***

30. spacer 9.30|2344443|32|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044987 (Deinococcus sp. AJ005 plasmid p96k, complete sequence) position: , mismatch: 8, identity: 0.75

ccgcctggcccgctttacgcgggctttaggcg	CRISPR spacer
ccgcctggcccgctttgagcggggcaccgacg	Protospacer
****************. ***** . . *.**

31. spacer 9.32|2344564|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021026 (Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence) position: , mismatch: 8, identity: 0.758

ccgggaaaaaagatgtttccggaaaagcgatca	CRISPR spacer
tctctaacaaaggtgtttccggaaaagcgagaa	Protospacer
.*   ** ****.*****************  *

32. spacer 9.42|2345174|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 8, identity: 0.758

tacagcgaccaggctgagcagcagcttgatgcc	CRISPR spacer
aatggcgaccaggctgctcagcagcttgactac	Protospacer
 *..************  ***********.  *

33. spacer 9.42|2345174|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 8, identity: 0.758

tacagcgaccaggctgagcagcagcttgatgcc	CRISPR spacer
aatggcgaccaggctgctcagcagcttgactac	Protospacer
 *..************  ***********.  *

34. spacer 9.44|2345296|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to MN445185 (Escherichia phage vB_EcoM_EC001, complete genome) position: , mismatch: 8, identity: 0.758

ataacaccgggccatcagggatgatgagcgtaa	CRISPR spacer
taaagttcaggccatccgggatgatgtgcgtaa	Protospacer
  **  .*.******* ********* ******

35. spacer 9.44|2345296|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to LR535912 (XXX) position: , mismatch: 8, identity: 0.758

ataacaccgggccatcagggatgatgagcgtaa	CRISPR spacer
taaagttcaggccatccgggatgatgtgcgtaa	Protospacer
  **  .*.******* ********* ******

36. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MN693703 (Marine virus AFVG_250M594, complete genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
aactggcccgccattgcgcgggcttttttctg	Protospacer
. ***********************.   *

37. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to NZ_CP013125 (Pseudomonas mendocina S5.2 plasmid pPME5, complete sequence) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
tatgagcccgccatcgcgcgggcttcggcagt	Protospacer
  . .*********.*************  **

38. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511008 (Pseudomonas phage CF124, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gagaggcccgccattgagcgggcttcgtcgtt	Protospacer
*   ************ **********    *

39. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511008 (Pseudomonas phage CF124, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gataggcccgccattgagcgggcttcgtcgtt	Protospacer
* . ************ **********    *

40. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511013 (Pseudomonas phage BR161, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gagaggcccgccattgagcgggcttcgtcgtt	Protospacer
*   ************ **********    *

41. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511013 (Pseudomonas phage BR161, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gataggcccgccattgagcgggcttcgtcgtt	Protospacer
* . ************ **********    *

42. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511002 (Pseudomonas phage CF57, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gagaggcccgccattgagcgggcttcgtcgtt	Protospacer
*   ************ **********    *

43. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511002 (Pseudomonas phage CF57, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gataggcccgccattgagcgggcttcgtcgtt	Protospacer
* . ************ **********    *

44. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511009 (Pseudomonas phage CF136, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gagaggcccgccattgagcgggcttcgtcgtt	Protospacer
*   ************ **********    *

45. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511009 (Pseudomonas phage CF136, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gataggcccgccattgagcgggcttcgtcgtt	Protospacer
* . ************ **********    *

46. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511003 (Pseudomonas phage CF65, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gagaggcccgccattgagcgggcttcgtcgtt	Protospacer
*   ************ **********    *

47. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511003 (Pseudomonas phage CF65, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gataggcccgccattgagcgggcttcgtcgtt	Protospacer
* . ************ **********    *

48. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511005 (Pseudomonas phage CF81, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gagaggcccgccattgagcgggcttcgtcgtt	Protospacer
*   ************ **********    *

49. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to MK511005 (Pseudomonas phage CF81, partial genome) position: , mismatch: 8, identity: 0.75

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
gataggcccgccattgagcgggcttcgtcgtt	Protospacer
* . ************ **********    *

50. spacer 9.6|2342979|33|NC_010831|CRISPRCasFinder,CRT matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 9, identity: 0.727

cggactgttgctcggtcagccgatgtttatgtc	CRISPR spacer
cggtctgttgctcggccagccgatcggcaaggg	Protospacer
*** ***********.********   .* *

51. spacer 9.6|2342979|33|NC_010831|CRISPRCasFinder,CRT matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 9, identity: 0.727

cggactgttgctcggtcagccgatgtttatgtc	CRISPR spacer
cggtctgttgctcggccagccgatcggcaaggg	Protospacer
*** ***********.********   .* *

52. spacer 9.8|2343101|33|NC_010831|CRISPRCasFinder,CRT matches to NZ_CP030195 (Salmonella enterica strain SA20080453 plasmid pSA20080453.1, complete sequence) position: , mismatch: 9, identity: 0.727

cagcagggactgaggcaagcaaagctgttcaga	CRISPR spacer
acactagcactgaggcaagcaaagatgatcagc	Protospacer
  .* .* **************** ** ****

53. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

54. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

55. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

56. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

57. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

58. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

59. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

60. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

61. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

62. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

63. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

64. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

65. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

66. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

67. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

68. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

69. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

70. spacer 9.10|2343223|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 9, identity: 0.727

cactaactccgatccccaccacgtccgcgacaa	CRISPR spacer
gcatggaaccgatcgccaccacgtccgcgacac	Protospacer
   *..  ****** *****************

71. spacer 9.34|2344686|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to LR134212 (Klebsiella aerogenes strain NCTC418 genome assembly, plasmid: 3) position: , mismatch: 9, identity: 0.727

caaaagcgaaatacaaaacctgaaagatcagat	CRISPR spacer
ctgtcgcgaaatacaaaaccagaaatatccgcg	Protospacer
* .  *************** **** *** *

72. spacer 9.46|2342797|32|NC_010831|PILER-CR matches to AP013974 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S24-C102, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

acttgtgcgtcaagatactttttaaccgtcaa	CRISPR spacer
ctttcgccgtcaagatactttttcaacgtcct	Protospacer
 .**   **************** * ****

73. spacer 9.46|2342797|32|NC_010831|PILER-CR matches to AP013982 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S44-C91, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

acttgtgcgtcaagatactttttaaccgtcaa	CRISPR spacer
ctttcgccgtcaagatactttttcaacgtcct	Protospacer
 .**   **************** * ****

74. spacer 9.46|2342797|32|NC_010831|PILER-CR matches to AP013528 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G3, isolate: uvMED-CGR-C7A-MedDCM-OCT-S41-C23) position: , mismatch: 9, identity: 0.719

acttgtgcgtcaagatactttttaaccgtcaa	CRISPR spacer
ctttcgccgtcaagatactttttcaacgtcct	Protospacer
 .**   **************** * ****

75. spacer 9.46|2342797|32|NC_010831|PILER-CR matches to AP013981 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S32-C55, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

acttgtgcgtcaagatactttttaaccgtcaa	CRISPR spacer
ctttcgccgtcaagatactttttcaacgtcct	Protospacer
 .**   **************** * ****

76. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to CP021184 (Sphingomonas wittichii DC-6 plasmid pDC03, complete sequence) position: , mismatch: 9, identity: 0.719

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
tcaccgcccgccatcgcgcgggtttcggcccg	Protospacer
 * . *********.*******.***** *

77. spacer 9.49|2342980|32|NC_010831|PILER-CR matches to NZ_CP049159 (Caballeronia sp. SBC1 plasmid pSBC1_3, complete sequence) position: , mismatch: 9, identity: 0.719

ggactgttgctcggtcagccgatgtttatgtc	CRISPR spacer
ggtctgttgctcggccagccgatcggcaaggg	Protospacer
** ***********.********   .* *

78. spacer 9.49|2342980|32|NC_010831|PILER-CR matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 9, identity: 0.719

ggactgttgctcggtcagccgatgtttatgtc	CRISPR spacer
ggtctgttgctcggccagccgatcggcaaggg	Protospacer
** ***********.********   .* *

79. spacer 9.42|2345174|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 10, identity: 0.697

tacagcgaccaggctgagcagcagcttgatgcc	CRISPR spacer
ctgcccgaacaggctgagcagcagctggaagag	Protospacer
.    *** ***************** ** *

80. spacer 9.42|2345174|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011450 (Sphingomonas sanxanigenens DSM 19645 = NX02 plasmid pNXO2, complete sequence) position: , mismatch: 10, identity: 0.697

tacagcgaccaggctgagcagcagcttgatgcc	CRISPR spacer
ctgcccgaacaggctgagcagcagctggaagag	Protospacer
.    *** ***************** ** *

81. spacer 9.42|2345174|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018821 (Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence) position: , mismatch: 10, identity: 0.697

tacagcgaccaggctgagcagcagcttgatgcc	CRISPR spacer
ctgcccgaacaggctgagcagcagctggaagag	Protospacer
.    *** ***************** ** *

82. spacer 9.50|2343041|32|NC_010831|PILER-CR matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cctgttgcgtcatgcacaagtaaggcaagcaa	CRISPR spacer
cggcactcgccatgcacaaggaaggcaagctg	Protospacer
*    . **.********** ********* .

83. spacer 9.41|2345113|33|NC_010831|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.667

ccgttacggtcacgggtaagaacggcagcggta	CRISPR spacer
tgaagccggtcacgtggaagaacggcagcgcgg	Protospacer
. .   ******** * *************  .

84. spacer 9.46|2342797|32|NC_010831|PILER-CR matches to MK448908 (Streptococcus phage Javan326, complete genome) position: , mismatch: 11, identity: 0.656

acttgtgcgtcaagatactttttaaccgtcaa	CRISPR spacer
ttttgtgggtcaaaatactttttaatgtctgc	Protospacer
 .***** *****.***********.  ...

85. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to NC_016644 (Pseudomonas sp. MC1 plasmid KOPRI126573, complete sequence) position: , mismatch: 11, identity: 0.656

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
atctggcccaccattgtgcgggcttttttatc	Protospacer
..*******.******.********.     .

86. spacer 9.47|2342858|32|NC_010831|PILER-CR matches to NC_007926 (Pseudomonas putida plasmid NAH7, complete sequence) position: , mismatch: 11, identity: 0.656

gcctggcccgccattgcgcgggcttcgggcgt	CRISPR spacer
atctggcccaccattgtgcgggcttttttatc	Protospacer
..*******.******.********.     .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

76850 : 142880

Acidithiobacillus_phage(27.27%)

tRNA,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081433043.1\|76850_77174_+\|transposase	transposase	NA	NA	NA	NA
WP_012473557.1\|77290_77512_-	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA
WP_012473558.1\|77518_77857_-	hypothetical protein	NA	NA	NA	NA
WP_041471214.1\|78023_78611_+	NAD(P)H oxidoreductase	NA	NA	NA	NA
WP_012473560.1\|78631_80533_+	potassium transporter	NA	NA	NA	NA
WP_012473561.1\|80700_82158_-	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_012473562.1\|82188_83577_-	Trk system potassium transporter TrkA	NA	NA	NA	NA
WP_012473563.1\|83729_84500_-	hypothetical protein	NA	NA	NA	NA
WP_153303981.1\|84661_85177_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_012473565.1\|85201_86410_-	ArsA family ATPase	NA	NA	NA	NA
WP_012473566.1\|86513_86696_-	hypothetical protein	NA	NA	NA	NA
WP_012473568.1\|87303_87507_-	two pore domain potassium channel family protein	NA	NA	NA	NA
WP_012473569.1\|87606_88209_-	DUF1997 domain-containing protein	NA	NA	NA	NA
WP_012473570.1\|88278_89352_-	peptide chain release factor 1	A0A2I2MPK0	Mycobacterium_phage	1.6e-09	42.0
WP_012473571.1\|89381_90743_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_012473572.1\|90803_91952_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_041471414.1\|92310_92586_-	acylphosphatase	NA	NA	NA	NA
WP_012473574.1\|92668_94729_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5ESM9	Bathycoccus_sp._RCC1105_virus	1.7e-105	41.7
WP_012473575.1\|95137_95962_+	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_012473576.1\|96004_97852_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	3.2e-119	42.1
WP_012473577.1\|98082_99021_+	TIGR01777 family protein	NA	NA	NA	NA
WP_012473578.1\|99094_99589_+	ferritin	NA	NA	NA	NA
WP_049756161.1\|99628_99838_+	hypothetical protein	NA	NA	NA	NA
WP_012473580.1\|99948_100221_-	RNA-binding protein	NA	NA	NA	NA
WP_041471416.1\|100615_101944_+	ammonium transporter	NA	NA	NA	NA
WP_012473582.1\|101955_102297_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_012473583.1\|102502_103429_+\|protease	cysteine protease	A0A1V0SLQ7	Klosneuvirus	6.1e-26	32.5
WP_012473584.1\|103589_104132_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012473585.1\|104237_104975_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.1e-09	26.3
WP_012473586.1\|105005_105782_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_167317615.1\|106415_107282_+	hypothetical protein	NA	NA	NA	NA
WP_012473588.1\|107281_108520_+	hypothetical protein	NA	NA	NA	NA
WP_167317616.1\|108732_108984_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041471419.1\|109096_110071_+	methyltransferase	A0A0B5IWU9	Pandoravirus	3.3e-91	59.6
WP_012473590.1\|110073_110799_+	type II restriction endonuclease BstVI	NA	NA	NA	NA
WP_012473591.1\|112152_112728_+	hypothetical protein	NA	NA	NA	NA
WP_012473592.1\|112853_114128_+	DUF1015 domain-containing protein	NA	NA	NA	NA
WP_041471420.1\|114411_114840_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_081433045.1\|114974_115655_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_153303858.1\|115940_116366_+	ribosome silencing factor	NA	NA	NA	NA
WP_012473596.1\|116455_118942_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	4.6e-121	33.7
WP_012473597.1\|118968_119202_+	CDGSH iron-sulfur domain-containing protein	NA	NA	NA	NA
WP_012473598.1\|119234_120932_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-141	49.7
WP_041471217.1\|126854_127823_+	ferrochelatase	NA	NA	NA	NA
WP_012473600.1\|127975_128683_+	phosphotransferase	NA	NA	NA	NA
WP_153303859.1\|128757_128901_+	hypothetical protein	NA	NA	NA	NA
WP_153303982.1\|128958_129723_-	four helix bundle protein	NA	NA	NA	NA
WP_012473603.1\|130285_130501_+	addiction module protein	NA	NA	NA	NA
WP_012473604.1\|130850_132374_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.3e-102	41.6
WP_012473605.1\|132366_133104_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.7e-55	44.6
WP_049756165.1\|133178_133412_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012473607.1\|133612_133822_+	antitoxin MazE family protein	NA	NA	NA	NA
WP_012473609.1\|134053_135076_-	hypothetical protein	NA	NA	NA	NA
WP_041471424.1\|135375_135645_+	toxin-antitoxin system	NA	NA	NA	NA
WP_012473611.1\|135632_135923_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012473612.1\|136013_136337_-	M48 family metallopeptidase	NA	NA	NA	NA
WP_153303860.1\|136335_136989_+	hypothetical protein	NA	NA	NA	NA
WP_012473613.1\|137054_137675_-	hypothetical protein	NA	NA	NA	NA
WP_012473614.1\|138835_140233_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_012473615.1\|141317_142880_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.0e-69	34.8

DBSCAN-SWA_2

677706 : 739695

Tetraselmis_virus(14.29%)

protease,integrase,transposase

attL 712393:712435|attR 755472:755514

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012474098.1\|677706_679104_-\|transposase	IS1380-like element ISPelu1 family transposase	NA	NA	NA	NA
WP_012474099.1\|679271_679877_+	DUF2012 domain-containing protein	NA	NA	NA	NA
WP_012474100.1\|679881_680784_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_012474101.1\|681013_682249_+	hypothetical protein	NA	NA	NA	NA
WP_012474102.1\|682245_683046_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_153303879.1\|683119_683419_-	hypothetical protein	NA	NA	NA	NA
WP_167317631.1\|683606_685868_+	TonB-dependent receptor	NA	NA	NA	NA
WP_012474105.1\|686051_686543_-	cupin domain-containing protein	NA	NA	NA	NA
WP_012474106.1\|686529_687054_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.9e-25	42.8
WP_012474107.1\|687174_688596_+	oxygen-independent coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_012474108.1\|688808_689522_+	uridine kinase	NA	NA	NA	NA
WP_012474109.1\|689502_690072_+	nitroreductase family protein	NA	NA	NA	NA
WP_012474110.1\|690084_692037_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L0W2	Tupanvirus	2.8e-57	29.5
WP_041471492.1\|692728_693517_+	N-formylglutamate amidohydrolase	NA	NA	NA	NA
WP_012474112.1\|693527_694940_+	DUF1704 domain-containing protein	NA	NA	NA	NA
WP_012473948.1\|695048_696545_+\|transposase	IS5-like element ISCph13 family transposase	NA	NA	NA	NA
WP_081433054.1\|696486_697089_+	DUF1704 domain-containing protein	NA	NA	NA	NA
WP_012474114.1\|697090_698137_+	glutathione synthase	NA	NA	NA	NA
WP_012474115.1\|698197_699373_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_012474116.1\|699636_700107_+	nucleoside deaminase	NA	NA	NA	NA
WP_041471493.1\|700571_701594_-	hypothetical protein	NA	NA	NA	NA
WP_012474118.1\|702035_703301_-	nitronate monooxygenase	NA	NA	NA	NA
WP_012474119.1\|703601_704345_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_012474120.1\|704466_709071_+	glutamate synthase large subunit	NA	NA	NA	NA
WP_012474121.1\|709114_710590_+	glutamate synthase subunit beta	NA	NA	NA	NA
WP_012474122.1\|710677_710947_+	DUF4404 family protein	NA	NA	NA	NA
WP_012474123.1\|710985_712299_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	3.5e-120	53.0
712393:712435	attL	NA	NA	NA	NA
WP_012474124.1\|712598_713771_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012474125.1\|713751_714720_+	hypothetical protein	NA	NA	NA	NA
WP_012474126.1\|714876_715131_-	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA
WP_012474127.1\|715156_716545_-	nif11-like peptide radical SAM maturase	A0A1B2IFR5	Erwinia_phage	4.7e-06	26.8
WP_012474128.1\|717053_717404_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012474129.1\|717494_718142_+	AAA family ATPase	W8ECJ6	Mycobacterium_phage	6.3e-14	35.0
WP_012474130.1\|718138_718408_+	hypothetical protein	NA	NA	NA	NA
WP_012474131.1\|718411_718846_+	hypothetical protein	NA	NA	NA	NA
WP_167317632.1\|718923_719424_+	S26 family signal peptidase	NA	NA	NA	NA
WP_012474133.1\|719577_721506_+	relaxase/mobilization nuclease and DUF3363 domain-containing protein	NA	NA	NA	NA
WP_012474134.1\|721510_723781_+	conjugal transfer protein TraG	NA	NA	NA	NA
WP_012474135.1\|723777_724206_+	hypothetical protein	NA	NA	NA	NA
WP_012474136.1\|724334_725264_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_041471270.1\|725320_726088_-	hypothetical protein	NA	NA	NA	NA
WP_012474138.1\|726044_726836_-	hypothetical protein	NA	NA	NA	NA
WP_012474139.1\|726966_727314_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012474140.1\|727394_727808_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012474141.1\|727788_728004_-	hypothetical protein	NA	NA	NA	NA
WP_012474142.1\|728603_729347_+	serine/threonine phosphatase	NA	NA	NA	NA
WP_012474143.1\|729492_730170_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012474144.1\|730259_731243_+	hypothetical protein	NA	NA	NA	NA
WP_012474145.1\|731443_732337_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_012474146.1\|732360_733203_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_012474147.1\|733206_734067_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-10	23.2
WP_012474148.1\|734063_734783_+	ATP-binding cassette domain-containing protein	A0A2R8FFL6	Cedratvirus	2.1e-13	27.0
WP_012474149.1\|734795_735929_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012474150.1\|736204_737536_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_012474151.1\|737726_738182_+	hypothetical protein	NA	NA	NA	NA
WP_012474152.1\|738297_739695_+\|transposase	IS1380-like element ISPelu1 family transposase	NA	NA	NA	NA
755472:755514	attR	NA	NA	NA	NA

DBSCAN-SWA_3

753013 : 826975

Shigella_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081433113.1\|753013_754063_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_153303881.1\|754561_755326_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_041471273.1\|755943_756726_+	hypothetical protein	NA	NA	NA	NA
WP_041471503.1\|756797_757556_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_153303999.1\|757576_758710_-	cell filamentation protein Fic	NA	NA	NA	NA
WP_012474163.1\|759879_762264_+	DEAD/DEAH box helicase family protein	M1H9V5	Acanthocystis_turfacea_Chlorella_virus	5.2e-29	31.1
WP_012474164.1\|762442_763636_+	AAA family ATPase	NA	NA	NA	NA
WP_012474166.1\|764196_764466_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_012474167.1\|764446_764731_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012473948.1\|764749_766246_-\|transposase	IS5-like element ISCph13 family transposase	NA	NA	NA	NA
WP_012474168.1\|766492_766840_-	helix-turn-helix transcriptional regulator	A0A088CD40	Shigella_phage	5.8e-14	50.6
WP_012474169.1\|766836_767160_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	4.4e-16	45.7
WP_012474170.1\|769929_770142_+	hypothetical protein	NA	NA	NA	NA
WP_012474171.1\|770458_770857_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_012474172.1\|770853_771087_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_167317633.1\|772058_772607_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_012474174.1\|772764_773046_+	2TM domain-containing protein	NA	NA	NA	NA
WP_012474175.1\|773274_773487_+	antitoxin MazE family protein	NA	NA	NA	NA
WP_012474176.1\|773483_773807_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_012474177.1\|773843_775058_-	hypothetical protein	NA	NA	NA	NA
WP_012474178.1\|775054_778423_-	hypothetical protein	NA	NA	NA	NA
WP_012474179.1\|778415_779051_-	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_012474180.1\|779047_780496_-	DUF3375 domain-containing protein	NA	NA	NA	NA
WP_041471275.1\|780579_781314_-	hypothetical protein	NA	NA	NA	NA
WP_041471276.1\|781794_782766_+	radical SAM protein	NA	NA	NA	NA
WP_041471278.1\|782746_783289_+	SPASM domain-containing protein	NA	NA	NA	NA
WP_012474182.1\|783428_783611_+	hypothetical protein	NA	NA	NA	NA
WP_012474183.1\|783819_784113_+\|transposase	transposase	NA	NA	NA	NA
WP_012474184.1\|784310_784769_+	mobile mystery protein A	NA	NA	NA	NA
WP_012474185.1\|784759_785356_+	mobile mystery protein B	NA	NA	NA	NA
WP_012474186.1\|785682_788481_+	AAA family ATPase	NA	NA	NA	NA
WP_012474187.1\|788600_791159_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_012474188.1\|791151_792204_-	virulence RhuM family protein	Q9JMN3	Wolbachia_phage	2.8e-83	50.3
WP_012474189.1\|792251_793844_-	type III restriction endonuclease	F2Y298	Organic_Lake_phycodnavirus	1.7e-36	26.3
WP_012474190.1\|793840_794485_-	N-6 DNA methylase	A0A2H4YF91	Aeromonas_phage	1.7e-06	33.1
WP_012474191.1\|794652_797631_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_012474192.1\|797633_798944_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_012474193.1\|798940_801001_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_012474194.1\|801746_802358_+	hypothetical protein	NA	NA	NA	NA
WP_012474195.1\|803091_804435_-	hypothetical protein	NA	NA	NA	NA
WP_012474196.1\|804468_805263_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012474197.1\|805637_806216_+	hypothetical protein	NA	NA	NA	NA
WP_012474198.1\|806292_806919_+	hypothetical protein	NA	NA	NA	NA
WP_041471510.1\|807194_808004_+	DUF4163 domain-containing protein	NA	NA	NA	NA
WP_012474200.1\|808201_809005_+	arsenite methyltransferase	NA	NA	NA	NA
WP_012474201.1\|809011_810484_+	serine/threonine protein kinase	NA	NA	NA	NA
WP_012474202.1\|810586_811222_+	hypothetical protein	NA	NA	NA	NA
WP_012474203.1\|811307_811619_+	DUF4282 domain-containing protein	NA	NA	NA	NA
WP_041471511.1\|811821_812724_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_012474205.1\|812759_814946_+	ATP-dependent RecD-like DNA helicase	A0A1P8DII4	Virus_Rctr197k	5.6e-54	31.6
WP_012474206.1\|815202_817590_+	ribonuclease R	Q0GXV6	Lactococcus_phage	1.0e-64	34.3
WP_012474207.1\|817793_818957_-	sodium/hydrogen exchanger	NA	NA	NA	NA
WP_012474208.1\|818977_820333_-	deoxyribodipyrimidine photo-lyase	Q9YVK7	Melanoplus_sanguinipes_entomopoxvirus	2.2e-125	49.3
WP_012474209.1\|820346_821060_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_049756180.1\|821073_822858_-	response regulator	A0A1V0SGR9	Hokovirus	2.0e-09	31.2
WP_012473614.1\|823091_824489_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_041471281.1\|824585_824924_-	hypothetical protein	NA	NA	NA	NA
WP_012474210.1\|825242_825806_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_012474211.1\|825821_826661_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012474212.1\|826684_826975_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1555464 : 1580942

Erwinia_phage(33.33%)

protease,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012473948.1\|1555464_1556961_-\|transposase	IS5-like element ISCph13 family transposase	NA	NA	NA	NA
WP_012474843.1\|1557282_1557783_+	DoxX family membrane protein	NA	NA	NA	NA
WP_153303922.1\|1557891_1558815_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012474845.1\|1558940_1559549_-	porin family protein	NA	NA	NA	NA
WP_041471580.1\|1559713_1560160_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_041471327.1\|1560168_1560897_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_012474848.1\|1561215_1562688_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	9.0e-40	29.0
WP_012474849.1\|1562772_1563321_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_012474850.1\|1563402_1564851_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_012474851.1\|1564837_1565389_-	DUF3109 family protein	NA	NA	NA	NA
WP_012474852.1\|1565678_1566575_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.6e-31	36.3
WP_012474853.1\|1566580_1567945_+	DNA repair protein RadA	NA	NA	NA	NA
WP_012474854.1\|1568036_1568378_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_012474855.1\|1568411_1569368_+	zinc-binding alcohol dehydrogenase	NA	NA	NA	NA
WP_012474856.1\|1569372_1570917_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.7e-15	28.9
WP_012474857.1\|1570929_1571946_+	ABC transporter permease	NA	NA	NA	NA
WP_012474858.1\|1571947_1573831_-	chloride channel protein	NA	NA	NA	NA
WP_012474860.1\|1574131_1574326_+	DUF2934 domain-containing protein	NA	NA	NA	NA
WP_012474861.1\|1574400_1574568_+	hypothetical protein	NA	NA	NA	NA
WP_012474862.1\|1574577_1575312_-	PASTA domain-containing protein	NA	NA	NA	NA
WP_012474389.1\|1575420_1576827_+\|transposase	IS1380-like element ISCph7 family transposase	NA	NA	NA	NA
WP_012474863.1\|1577134_1578109_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_153303923.1\|1579455_1580942_-\|transposase	ISNCY-like element ISCph14 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2259203 : 2330645

Hokovirus(22.22%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012475467.1\|2259203_2260283_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_012475468.1\|2260719_2261394_+	phospholipase	NA	NA	NA	NA
WP_012475469.1\|2261475_2265159_+	methionine synthase	A0A140XBC7	Dickeya_phage	2.5e-14	63.3
WP_153304022.1\|2265647_2267339_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_012475472.1\|2267587_2268268_-	murein L,D-transpeptidase catalytic domain family protein	NA	NA	NA	NA
WP_153303965.1\|2268733_2269633_+	DUF4412 domain-containing protein	NA	NA	NA	NA
WP_012475474.1\|2269734_2270412_-	hypothetical protein	NA	NA	NA	NA
WP_153304023.1\|2270645_2271074_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_012475476.1\|2271279_2271942_-	YukJ family protein	NA	NA	NA	NA
WP_012475477.1\|2272095_2272995_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_012475478.1\|2273179_2275186_+	transketolase	NA	NA	NA	NA
WP_012475479.1\|2275207_2276002_+	6-phosphogluconolactonase	NA	NA	NA	NA
WP_153304024.1\|2276030_2277458_-	glucose-6-phosphate dehydrogenase	M4SP85	Cyanophage	7.3e-79	38.8
WP_012475481.1\|2277457_2278372_-	decarboxylating 6-phosphogluconate dehydrogenase	A0A1D8KPW3	Synechococcus_phage	1.1e-56	38.9
WP_012475482.1\|2278382_2281364_-	response regulator	A0A1V0SGX0	Hokovirus	2.0e-54	29.3
WP_012475483.1\|2281379_2282585_-	hypothetical protein	NA	NA	NA	NA
WP_012475484.1\|2282834_2283977_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012475485.1\|2284148_2284835_-	SIMPL domain-containing protein	NA	NA	NA	NA
WP_012474389.1\|2284893_2286300_+\|transposase	IS1380-like element ISCph7 family transposase	NA	NA	NA	NA
WP_012475486.1\|2287111_2287909_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_012475487.1\|2288004_2289444_+	hypothetical protein	NA	NA	NA	NA
WP_012475488.1\|2289431_2290493_+	succinylglutamate desuccinylase	NA	NA	NA	NA
WP_012475490.1\|2291295_2292435_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_012475491.1\|2292632_2293094_-	YbaK/EbsC family protein	NA	NA	NA	NA
WP_012475492.1\|2293327_2293939_-	porin family protein	NA	NA	NA	NA
WP_012475493.1\|2294238_2294847_-	porin family protein	NA	NA	NA	NA
WP_012475494.1\|2295070_2295868_-	patatin-like phospholipase family protein	A0A1V0SFX9	Hokovirus	1.6e-06	22.1
WP_153304025.1\|2296474_2297881_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_012475497.1\|2299057_2301487_+	AAA family ATPase	NA	NA	NA	NA
WP_049756213.1\|2301483_2302341_+	universal stress protein	NA	NA	NA	NA
WP_012475499.1\|2302435_2303239_-	RNA methyltransferase	NA	NA	NA	NA
WP_012475500.1\|2303235_2304036_-	hypothetical protein	NA	NA	NA	NA
WP_012475501.1\|2304157_2305405_+	U32 family peptidase	Q6DW11	Phage_TP	7.7e-24	32.1
WP_012475502.1\|2305489_2305723_-	hypothetical protein	NA	NA	NA	NA
WP_012475503.1\|2305836_2306916_+	hydrogenase	NA	NA	NA	NA
WP_012475504.1\|2306969_2307794_+	oxidoreductase	NA	NA	NA	NA
WP_012475505.1\|2307804_2308569_+	NADH ubiquinone oxidoreductase	NA	NA	NA	NA
WP_012475506.1\|2308555_2309833_+	Ni/Fe hydrogenase subunit alpha	NA	NA	NA	NA
WP_012475507.1\|2310001_2310877_-	DUF4349 domain-containing protein	NA	NA	NA	NA
WP_041471658.1\|2310915_2311344_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_012475509.1\|2311621_2312305_+	porin family protein	NA	NA	NA	NA
WP_012475510.1\|2312376_2313426_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_012475511.1\|2313445_2314636_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012475512.1\|2314730_2315273_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_012475513.1\|2315338_2315644_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012475514.1\|2315640_2315871_-	addiction module protein	NA	NA	NA	NA
WP_012475515.1\|2316277_2316475_-	hypothetical protein	NA	NA	NA	NA
WP_012475516.1\|2316622_2318020_+\|transposase	IS1380-like element ISPelu1 family transposase	NA	NA	NA	NA
WP_012475517.1\|2318249_2318783_-	hypothetical protein	NA	NA	NA	NA
WP_012475518.1\|2318882_2320280_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_012475519.1\|2320692_2321607_+	NAD-dependent epimerase/dehydratase family protein	A0A2H4UUK0	Bodo_saltans_virus	5.8e-29	29.6
WP_012475520.1\|2321627_2322443_+	glycosyltransferase	F2Y1U7	Organic_Lake_phycodnavirus	1.7e-16	30.8
WP_012475521.1\|2322444_2323335_-	hypothetical protein	NA	NA	NA	NA
WP_012475522.1\|2323880_2324366_+\|transposase	transposase	NA	NA	NA	NA
WP_153303967.1\|2324395_2324788_+	hypothetical protein	NA	NA	NA	NA
WP_153303968.1\|2324800_2325379_+\|transposase	transposase	A0A2P1JR32	Mycobacterium_phage	1.1e-06	26.0
WP_012475523.1\|2326815_2328606_-	hypothetical protein	NA	NA	NA	NA
WP_012474389.1\|2329238_2330645_-\|transposase	IS1380-like element ISCph7 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2481405 : 2539880

Bacillus_phage(28.57%)

tRNA,bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012474914.1\|2481405_2482635_-\|transposase	ISAzo13-like element ISCph5 family transposase	NA	NA	NA	NA
WP_012475677.1\|2482884_2483133_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_012475678.1\|2483147_2484575_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_041471386.1\|2484784_2485360_-	lipid-binding SYLF domain-containing protein	NA	NA	NA	NA
WP_012475680.1\|2485510_2486830_-	AAA family ATPase	K4FB40	Cronobacter_phage	6.5e-66	46.9
WP_012475681.1\|2486887_2488528_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_012475682.1\|2488537_2488834_-	hypothetical protein	NA	NA	NA	NA
WP_012475684.1\|2489530_2490550_-	VWA domain-containing protein	NA	NA	NA	NA
WP_012475685.1\|2490963_2491959_-	VWA domain-containing protein	NA	NA	NA	NA
WP_012475686.1\|2493217_2493745_-	acetyltransferase	NA	NA	NA	NA
WP_012475687.1\|2493741_2494020_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_012475688.1\|2494556_2495216_-	hypothetical protein	NA	NA	NA	NA
WP_081433123.1\|2495336_2496374_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012475692.1\|2499616_2500612_-	hypothetical protein	NA	NA	NA	NA
WP_012475693.1\|2500630_2502856_-\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	W8CYL7	Bacillus_phage	5.9e-27	24.1
WP_012475694.1\|2502858_2505033_-\|bacteriocin	NHLP family bacteriocin export ABC transporter peptidase/permease/ATPase subunit	W8CYL7	Bacillus_phage	4.9e-34	27.6
WP_012475695.1\|2505029_2505365_-	TolC family protein	NA	NA	NA	NA
WP_012475696.1\|2506357_2507332_-	hypothetical protein	NA	NA	NA	NA
WP_012475697.1\|2507562_2507847_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_041471676.1\|2507893_2508463_+	hypothetical protein	NA	NA	NA	NA
WP_012475699.1\|2508584_2509559_-	hypothetical protein	NA	NA	NA	NA
WP_012475700.1\|2510112_2510664_+	hypothetical protein	NA	NA	NA	NA
WP_012475701.1\|2510660_2510891_+	hypothetical protein	NA	NA	NA	NA
WP_012475702.1\|2511143_2511569_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_012475703.1\|2511565_2511814_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_012475704.1\|2512239_2512473_+	hypothetical protein	NA	NA	NA	NA
WP_153303974.1\|2512547_2513504_-	hypothetical protein	NA	NA	NA	NA
WP_012475706.1\|2513529_2514408_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_012475707.1\|2514884_2515883_-	AAA family ATPase	NA	NA	NA	NA
WP_041471679.1\|2515974_2516202_-	hypothetical protein	NA	NA	NA	NA
WP_012475709.1\|2516240_2517284_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.9e-61	42.7
WP_012475710.1\|2517333_2517903_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	9.8e-35	50.9
WP_012475711.1\|2518093_2518450_+	preprotein translocase subunit YajC	NA	NA	NA	NA
WP_012475712.1\|2518459_2519560_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.4e-58	39.2
WP_012475713.1\|2519566_2520220_+	hypothetical protein	NA	NA	NA	NA
WP_012475714.1\|2520223_2521636_+	B12-binding domain-containing radical SAM protein	NA	NA	NA	NA
WP_012475715.1\|2521782_2522169_+	cytochrome c5 family protein	NA	NA	NA	NA
WP_012475716.1\|2522169_2522475_+	cytochrome c5 family protein	NA	NA	NA	NA
WP_012475717.1\|2522533_2523436_-	bile acid:sodium symporter family protein	NA	NA	NA	NA
WP_012475718.1\|2523583_2523790_+	hypothetical protein	NA	NA	NA	NA
WP_012475719.1\|2523852_2524107_+	hypothetical protein	NA	NA	NA	NA
WP_012475720.1\|2524120_2524921_+	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	2.6e-33	36.5
WP_012475721.1\|2524928_2526245_+	hypothetical protein	NA	NA	NA	NA
WP_012475722.1\|2526267_2526660_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA
WP_012475723.1\|2526662_2526920_-	MoaD/ThiS family protein	NA	NA	NA	NA
WP_012475724.1\|2526906_2528139_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_012475725.1\|2528138_2529080_-	bifunctional molybdenum cofactor biosynthesis protein MoaC/MoaB	NA	NA	NA	NA
WP_153303975.1\|2529553_2530861_-	hypothetical protein	NA	NA	NA	NA
WP_012475727.1\|2531410_2531908_+	arsenate reductase (azurin) small subunit	NA	NA	NA	NA
WP_012475728.1\|2531921_2534483_+	arsenate reductase (azurin) large subunit	NA	NA	NA	NA
WP_012475729.1\|2534661_2535660_+	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_012475730.1\|2535664_2536135_-	molybdenum cofactor biosynthesis protein MoaC	NA	NA	NA	NA
WP_012475731.1\|2537009_2538179_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_012475732.1\|2538344_2539880_-\|transposase	IS1634 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

2561155 : 2599729

uncultured_Caudovirales_phage(100.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012475755.1\|2561155_2562067_-\|protease	protease HtpX	NA	NA	NA	NA
WP_153303976.1\|2562470_2563073_-	hypothetical protein	NA	NA	NA	NA
WP_012475757.1\|2563166_2563367_+	hypothetical protein	NA	NA	NA	NA
WP_081433097.1\|2563714_2563984_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_153303977.1\|2563980_2564160_+	hypothetical protein	NA	NA	NA	NA
WP_012475761.1\|2564234_2564879_+	hypothetical protein	NA	NA	NA	NA
WP_012475762.1\|2565094_2565574_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012475763.1\|2565661_2566009_+	cupin domain-containing protein	NA	NA	NA	NA
WP_012475765.1\|2566584_2567604_+	hypothetical protein	NA	NA	NA	NA
WP_012475766.1\|2567700_2568687_+	hypothetical protein	NA	NA	NA	NA
WP_012475767.1\|2569761_2571288_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_153304028.1\|2572177_2572336_-	DUF4231 domain-containing protein	A0A2H4JD89	uncultured_Caudovirales_phage	8.4e-05	52.4
WP_012475769.1\|2572956_2573481_-	hypothetical protein	NA	NA	NA	NA
WP_012475770.1\|2573581_2573947_-	hypothetical protein	NA	NA	NA	NA
WP_012474316.1\|2574031_2574871_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_012474315.1\|2574894_2575185_-\|transposase	transposase	NA	NA	NA	NA
WP_041471392.1\|2575306_2575612_-	hypothetical protein	NA	NA	NA	NA
WP_012473830.1\|2575839_2577237_-\|transposase	IS1380-like element ISPelu1 family transposase	NA	NA	NA	NA
WP_012475772.1\|2578074_2578521_-	hypothetical protein	NA	NA	NA	NA
WP_081433125.1\|2578520_2578982_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_049756217.1\|2578997_2579582_-	hypothetical protein	NA	NA	NA	NA
WP_012475775.1\|2579583_2582703_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_012475776.1\|2582933_2583896_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_012475778.1\|2585177_2585816_-	hypothetical protein	NA	NA	NA	NA
WP_012475779.1\|2586180_2586786_-	cytochrome b561	NA	NA	NA	NA
WP_012475780.1\|2586782_2588390_-	tetrathionate reductase family octaheme c-type cytochrome	NA	NA	NA	NA
WP_012475782.1\|2588718_2590152_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012475783.1\|2590746_2591181_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_012475784.1\|2591308_2591890_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
WP_012475785.1\|2591901_2592768_+	prephenate dehydrogenase	NA	NA	NA	NA
WP_012475786.1\|2592764_2593622_+	NAD(+)/NADH kinase	NA	NA	NA	NA
WP_012475787.1\|2593648_2595115_+	hypothetical protein	NA	NA	NA	NA
WP_012473948.1\|2595187_2596684_-\|transposase	IS5-like element ISCph13 family transposase	NA	NA	NA	NA
WP_012475788.1\|2596844_2597603_+	hypothetical protein	NA	NA	NA	NA
WP_012475789.1\|2597641_2598211_-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	NA	NA	NA	NA
WP_012474389.1\|2598322_2599729_+\|transposase	IS1380-like element ISCph7 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_010831

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection