CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_012781	[Eubacterium] rectale ATCC 33656, complete sequence	6 crisprs	cas3,PrimPol,RT,c2c9_V-U4,DinG,cas9,cas1,cas2,csn2,WYL,DEDDh,cas4,cas7,cas8c,cas5,csa3,PD-DExK	0	29	6	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_012781_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012781_1

824252-824314

Orphan

Consensus_repeat	Method
AATAAGTTATAAAGAGTTATAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012781_1

>merge|NC_012781|1|824252-824314|CRISPRCasFinder
AATAAGTTATAAAGAGTTATAAAAAGAATACAAAGTTATAAAGAGTTATAAAAATTATTAAAA

>NC_012781|1|1|824252-824314|CRISPRCasFinder
AATAAGTTATAAAGAGTTATAAAA	AGAATACAAAGTTAT
AAAGAGTTATAAAAATTATTAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_012781.1\|WP_012741794.1\|828133_829033_+\|PD-(D/E)XK-nuclease-family-transposase	unknown	unknown	gnl\|CDD\|273806
NC_012781.1\|WP_012741792.1\|827049_827811_+\|hypothetical-protein	unknown	unknown	unknown
NC_012781.1\|WP_012741783.1\|817371_818451_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NC_012781.1\|WP_012741800.1\|838267_839008_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_012781.1\|WP_041253913.1\|829190_830585_+\|hypothetical-protein	unknown	unknown	unknown
NC_012781.1\|WP_012741799.1\|835407_838200_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|376899
NC_012781.1\|WP_012741797.1\|832184_833174_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273776
NC_012781.1\|WP_012741787.1\|822352_824206_+\|fructose-bisphosphatase-class-III	unknown	unknown	gnl\|CDD\|377726
NC_012781.1\|WP_012741791.1\|825446_826994_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NC_012781.1\|WP_041254478.1\|814536_815688_+\|class-I-SAM-dependent-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223194
NC_012781.1\|WP_012741780.1\|814135_814453_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NC_012781.1\|WP_015516825.1\|824739_825393_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_012781.1\|WP_041253911.1\|821156_822134_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|273075
NC_012781.1\|WP_012741784.1\|818499_819093_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
NC_012781.1\|WP_012741798.1\|833170_835423_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223914
NC_012781.1\|WP_012741778.1\|810378_811665_+\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|225428
NC_012781.1\|WP_012741782.1\|815696_817370_+\|cell-surface-protein	unknown	unknown	gnl\|CDD\|375986
NC_012781.1\|WP_012741779.1\|811798_813826_+\|phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NC_012781.1\|WP_012741796.1\|830603_832043_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379663
NC_012781.1\|WP_012741785.1\|820134_821007_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|225308

Protein	Function_ID	Function_description	E-value
NC_012781.1\|WP_012741794.1\|828133_829033_+\|PD-(D/E)XK-nuclease-family-transposase	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	7.61987e-13
NC_012781.1\|WP_012741783.1\|817371_818451_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	7.02432e-53
NC_012781.1\|WP_012741800.1\|838267_839008_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.95798e-95
NC_012781.1\|WP_012741799.1\|835407_838200_+\|FtsX-like-permease-family-protein	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	4.15941e-09
NC_012781.1\|WP_012741797.1\|832184_833174_+\|hypothetical-protein	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	8.30466e-15
NC_012781.1\|WP_012741787.1\|822352_824206_+\|fructose-bisphosphatase-class-III	gnl\|CDD\|377726	pfam06874, FBPase_2, Firmicute fructose-1,6-bisphosphatase. This family consists of several bacterial fructose-1,6-bisphosphatase proteins (EC:3.1.3.11) which seem to be specific to phylum Firmicutes. Fructose-1,6-bisphosphatase (FBPase) is a well known enzyme involved in gluconeogenesis. This family does not seem to be structurally related to pfam00316.	0
NC_012781.1\|WP_012741791.1\|825446_826994_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.39235e-43
NC_012781.1\|WP_041254478.1\|814536_815688_+\|class-I-SAM-dependent-RNA-methyltransferase	gnl\|CDD\|223194	COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair].	7.28293e-152
NC_012781.1\|WP_012741780.1\|814135_814453_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	3.75367e-17
NC_012781.1\|WP_015516825.1\|824739_825393_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.32304e-72
NC_012781.1\|WP_041253911.1\|821156_822134_+\|biotin-synthase-BioB	gnl\|CDD\|273075	TIGR00433, biotin_synthase, biotin synthase. Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	2.05769e-156
NC_012781.1\|WP_012741784.1\|818499_819093_+\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	3.26138e-97
NC_012781.1\|WP_012741798.1\|833170_835423_+\|hypothetical-protein	gnl\|CDD\|223914	COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis, outer membrane].	5.27813e-11
NC_012781.1\|WP_012741778.1\|810378_811665_+\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NC_012781.1\|WP_012741782.1\|815696_817370_+\|cell-surface-protein	gnl\|CDD\|375986	pfam18560, Lectin_like, Lectin like domain. This is a lectin like domain found in Cwp84, a surface-located cysteine protease (a member of the C1A cysteine protease family, also known as papain proteases) responsible for the maturation of the SlpA precursor protein which has been implicated in the degradation of extracellular matrix proteins such as fibronectin, laminin and vitronectin. Structural comparison indicates that this domain is similar to carbohydrate-binding domains.	3.08249e-69
NC_012781.1\|WP_012741779.1\|811798_813826_+\|phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.25429e-74
NC_012781.1\|WP_012741796.1\|830603_832043_+\|hypothetical-protein	gnl\|CDD\|379663	pfam14620, YPEB, YpeB sporulation. YPEB is a protein that is necessary for the functioning of SleB during spore-cortex hydrolysis.	0.000441818
NC_012781.1\|WP_012741785.1\|820134_821007_+\|EamA-family-transporter	gnl\|CDD\|225308	COG2510, COG2510, Predicted membrane protein [Function unknown].	1.89241e-36

>NC_012781.1|WP_012741787.1|822352_824206_+|fructose-bisphosphatase-class-III
MYNDKGNTKYLKLLKQNYSSSQDVIREIVNLSAIINLPKGTEFFLSDIHGEYEAFLHIMNNCSGVIKEKVDLIFKDTISDYDRQELCTLIYYPREKMALLDEQGKIDSDWYAMTLNQLILVAKLLSSKYTRSKVRKALPEEYAYIIDELLHAQEDEDANQVRYHKQILKTIIDLEDADEFIIALSALIKRLAVDHLHIVGDVFDRGGSADKILDLLYDYHSLDIEWGNHDILWMGAACGNDACICNVIRNNLKYNNVEILENAYGISLRQLMLFGMKTYGIEDGIEAARAAITVMLFKLEGQLILAHPEYEMGNRLMLDRLDELQDVGVDRKRFPTVDDERPYALSDEETVIMRKLHRQFVTGQRLHKHVRFLYDKGGMYNVYNGNLLYHGCVPVDSNGAFDKLYIDGEFYHGRALLDKCDEKARAAYVDNPYKDDVDFMWFLWGGEKSPLCGRRLKTFEMEYVTDKSMWEEPSNPYYSRYYDKSFCCQILHEFGLYDDDAHIINGHTPVHAIEGENPVRANGKLFVIDGGFCRAMNKKTGIAGYTLIYNSHGLRLKAHTPFTSVEDALINNTDIETSSEVEENDKRRMLVKDTDIGKRLIGEIDDLHKLLENYRRL
>NC_012781.1|WP_041253911.1|821156_822134_+|biotin-synthase-BioB
MDPITLAQEIIDGRRITRDDDLSFFLTCDLDELCKGADMIREKFIGDKVDLCSIINGRSGKCPEDCKYCAQSAHNHTNCEVYDFLPEEKILEACRMNEREGVDRFSIVTAGKALTGEEFDKAIHAYETMKRECKIDLCASMGFLSAEQLHRLHEAGVSSYHHNIETSKRNFPNICTTHTYDMKIETLKKVKAEGMYACSGGIIGMGETWEDRLDMAVSLAEVGVDSIPLNALMPIAGTPLEGLEHISEPDILRTVSFFRYINPKADIRLGAGRALLTNDGELAFKSGASATITGNMLTTVACATIRSDKEMLEGMGRNVTPEYMK
>NC_012781.1|WP_012741785.1|820134_821007_+|EamA-family-transporter
MWVLYAFGSAFFAGITSILAKCGIKKTDSNVATAIRTIVVLIFSWIMVFVVKAQGQITAVSAKTWIFLMLSGVATGASWLCYFKALQLGDVNRVVPIDKSSTILTIILAFIFFKEEINVLRLVCVVLIAIGTYMMITKKEISQEEQNKARGSHGWLFYAVLSAVFASFTSILGKVGIEGINSNLGTAIRTIVVLIMAWIVVFATGKQHTIKHIEKKELGFICLSGLATGGSWLCYYKALQDGLASVVVPIDKLSIVVSIVFSYFVFKEKLTIKSFTGLVLIIAGTLIMLV
>NC_012781.1|WP_012741784.1|818499_819093_+|XTP/dITP-diphosphatase
MTKIIFATGNKDKLREIKEILSDCDVDIRSMKEAGINVDIVEDGKTFEDNALIKARAIAAHTDAIVLADDSGLEIDYLNKEPGVYSARYMGEDTSYDIKNNNLIERLDGVPKEKRTARFVCAIAAVLPDGKELVTRQTMEGYIGWEIAGANGFGYDPIFYLDEYGCSSAELTPQQKNAISHRGKALRAMREMLVKVI
>NC_012781.1|WP_012741783.1|817371_818451_+|N-acetylmuramoyl-L-alanine-amidase
MYRNILKIITVFFVMLALIVPVTLEKLPAINEKYDMAKALEDNVLQNYVKASTDAKQEKNPDEILQKGAGFEDDLRIELPDDSEGERQSISVETDALTQTVYVKLKADVDNYFTKYSMTGRSNHIDSMQYYRKGADGVIAITTDKLYQVKQRIENGYLYLSFVNLHDIYDKVIIIDAGHGGRMTGAVRNGIEEKSINLDIVLALKEQLDSYSGDKRLGIFYTRTTDTNPTLQQRAALANKADADLFISVHCNSYEKGNFTAVSGTQVLYSQSDNRELGSKHLAQICMDNVTAATGNRAFGLLPADDIYIIRTSEAPVALVEVGFMTNRQELDNLANADYQKQAAQGIYNAIMQAFDEGY
>NC_012781.1|WP_012741782.1|815696_817370_+|cell-surface-protein
MKYSKRYIAFTLILALIFVSNFYIYAKDSSTLGAFRGAQIDNTIWSPLVAADVNGTTIRLRIENKEYTSEDEHVYMDENRNIMVPVSMLRDALNSSAHVYNKNELLVEKHSLTADFKLADDNGFVQYKGQFYASLDKLSKLLDMTCSFDTATNTLTMTDKSEGVSTVPTKYDLRERQRVSLIRDQGSYGTCWAFAATSALESALMPEEQLLFSVDHMSMSNSFNVNQYDGGEYTMGMAYLAAWQGPVYDADDPYGDGVTRDDLAAVKHVQQMLIIDGKDYQGIKEAVFKYGGVQTSLYSTIASSKTKTPYYNKQTNSYCYMGQDKPNHDVVIIGWDDNYPKENFNVDLEGDGAFICQNSWGSSFGDNGVFYVSYYDTNVGTHNVVYTDIESADNYDNIYQSDLCGWVGKMGYDKEDMYGANIFTAQSAESLRASGFYATAADTSYKLYVVKNFENEYSFKNKTLVAEGSLKNAGYYTVDFDEPVDLESGERYAIVLYINTPGSTHPMAIEYNSGEAYMSTVNLDDGEGYISYDGVAYINVKEKQDCNLCIKAFSDNR
>NC_012781.1|WP_041254478.1|814536_815688_+|class-I-SAM-dependent-RNA-methyltransferase
MNRFELVVPCHFGLEAVVKREIYDLGYEITRVEDGRVSFEGDAEAICRANIFLRGAERVLLQVGRFKAATFDELFENVKALPWENYIPKDGRFWVKKASSIKSKLFSPSDIQSIVKKAMVERMKRSYHIDWFPEDGAQYPVRVFLYKDEVMVTLDTSGDSLHKRGYRLATSKAPLTETLAASLIMLTPWHADRILVDPFCGSGTFPIEAAMMAANIAPGMNREFTAESWTNIIPRKLWYEAVQEAEDMIDKDVQVDIQGYDIDPDVVAAARENAKRAGVEHMIHFQQRAVADLHHPKKYGFIISNPPYGERLEEKSALPALYSQIGEAYKRLDAWSMYLITSYEDTERYIGRKADKNRKIYNGMIKTYFYQFMGPKPPRRKKD
>NC_012781.1|WP_012741780.1|814135_814453_+|rhodanese-like-domain-containing-protein
MKFKIVYADELYKVQKEMNALLIDIRTREEYDRSHWKGALSMPMDITDSYESELDASQSVIFYCTHGGSSMKLARYLGNRGFDTATVIGGYNAMCGYQKKLQKYG
>NC_012781.1|WP_012741779.1|811798_813826_+|phosphodiesterase
MSNRFDDENNIEMDIKTAFASWGKYVFKCFPQECRLRSFLSEDSLDDSEEKNVDIINNPFIDSMVDRNNLLKAVKQIAEGEKFATVVLHAKEGTDTYRISFKSICFDDDGRTVEAIGLAEQLDERLNESEMVNALGSNFNSIYYVDVDNNKMYPYRMNPSVRAMFGEVLESKPGYNEMMEQYVNAIVLEEDKLHMLLETSINNLRRQFLIKDTYQHDYRIVRDGQVQYCRAKFVNVSGVGELHKMIAGFSDISPEKQRELERIAYVDAVTGGNNYESFKKKLRDRNVSGYLISMDIHSFKIVNSICGVAKGDEALRWISENIRGVVGYNDISGHINADRFVIFFADDKINKVIRKIETINLQLIKVSESLKIPKIQPYFGVTKWEPGKKVEEAYGEANFAKNRIKERKDVLYQIYSQADTERIVEEKQMEDNFYRDLNDNHFEIWYQPKYAPKTNKLVGAEGLVRWRRENNEIIPPSKFIPLFERNGMIKALDEYVFREVCTHQRRWLDEGKKIVPISINLSRASLYFESVVKRYHDIARRIGIYTHLVPIEITESAAVDNDEIKSIADKFHGNGFPLLVDDFGSGYSSLVTLNMKCFDTLKIDKSLIDYIGDSNGERLLVHTIALAKELGICVTAEGVESQEQVEFLKNIDCDSIQGFYYSKPLPLTEYEMLLD
>NC_012781.1|WP_012741778.1|810378_811665_+|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MKEYSIGTKCVQAGYAAGNGEPRQIPIIQSTTFKYDTSEDMGKLFDLEAEGYFYSRLQNPTCDTVARKIAAMEGGTAAMLTSSGQAANFYAMFNICECGDHIVASSSIYGGTFNLIAVTMAKMGITATFVSPDATEEELNAAFRPNTKLMFGETIANPALTVLDIELFAKVAHEHGVPLIVDNTFPTPVNCRPIEWGADIVTHSTTKYMDGHGATLGGAIVDSGKFDWMAHADKYPGLCTPDDSYHGITYAEKFGKEGAFITKCTAQLMRDFGSMQSPQNAFMLNLGLESLHVRMPKHVENGQAVAEFLENHPKVAYVNYSGLPSNKYYERAQKYLPNGGCGVVSFGLKGGREAASAFMKALRLGAIETHVADARTCCLNPATSTHRQMNDEQLKEAGVPAELIRISLGLEDKVDLIADISNALDAIK
>NC_012781.1|WP_015516825.1|824739_825393_+|response-regulator-transcription-factor
MIEILIVEDEKPISDLIRLNLMKAGYSCTCAFDGMEAADILEERNFDLIILDVMLPKLNGFELMEYIKPLGIPVIFLTAKATLDDRLRGLTSGAEDYMVKPFEIVELLARVNIVLRRYNKMEQQLTFKDIAIDTKNQNVSKAGKHIELTPKEFELLELLMRNKNITLFREKIYEEIWGSEYSVESRTLDLHIQRLRKKLDIGDSLKTVFKAGYRLEE
>NC_012781.1|WP_012741791.1|825446_826994_+|HAMP-domain-containing-histidine-kinase
MKFRYKVLFTNLILLSLGLGLVGYLMIHKNFELAKQTQLKNAIVQNNLVQSSVEYELLQLLNSVSDNSETSNNNTDNNNAEKSSISASSIAAQLPQIGSRVSSSVRSRDSFFYIYFDGEKVYTDDKSDARISDTLFKNLTTGNKNYVIKEESQKHYIYVTSQSVINEKNLWIVSKCDASEAYTLLDEQINYFRLIIIVILIAESAAMYFISRYMTKPLEKLNHVSEEIAQGDYATRVNVKSHDEIGLLAQKFNIMAQAVSDHVDELNDMVHRREQFVADFTHEIKTPMTSIIGYADTMRSLELPREEQMMALGYIFSEGKRLESMSQKLFELIYLRRHDIEKARVHMADLCAEVVKVVEPAYENRHLTIETEIEDTVLTVNRELLVTALVNLMDNARKASEEGQQVEVTGKFVDNMACNIPKDKTDIGEAESADDRKCTRAYEICIIDHGIGMTKEQAERICDEFYMADKSRARKEGGAGIGMSLVAIILEHHNAVLSVESEPGCGTTMRILLPW
>NC_012781.1|WP_012741792.1|827049_827811_+|hypothetical-protein
MKKDSFKLIIMSVAVICIVIAGIMVPGIVLEANQKSEHDHVAKVPKSYLPSGSVMAKEASANLKLSEKLSLIDGQWDSTTDDAASYEMDEQDYQAVATCRKSIEKLYDEKLYPVNLSPDYSNWYTWEAAAKKASDNTFNTYTAYYWIIRFEKYDGTQNHTIWMLEDGTIIMAKAHMKDISDMSEYKEVLQADDESQAENDLSAYKGYFDYSGIDFSKLNLISETTAVEQKNNESYEVLQFLQENEYVYAIHEK
>NC_012781.1|WP_012741794.1|828133_829033_+|PD-(D/E)XK-nuclease-family-transposase
MSGETKEILDSNYGQNDVIINRLIDKMTLFDDNLMSLVFGQNIETTELLLRVIMERDIKVIDVRGQDELKNSVIGGRCITLDVHAIDVDGRHIDIEVQINAEGSHVRRARYHSSMMDARMLGEGQEFKEIKDSYVIFIYDHDKFRKGLPFYHIQRRVDETGEVFGDGSHIIYVNGRYEGNDDIGRMMKDFHQCRPEQIESETLSKAVAYYKEKEGRGAMSEAVRQYAMEYAKEYAKEYAREYGEEQKEEGILQGKNNMLYSLVSKGRLKIDVAAEEANVSLGEFEKSMEEAGYKIPELV
>NC_012781.1|WP_041253913.1|829190_830585_+|hypothetical-protein
MDKRGNIFSRNMRLFAAIMTLIEALVLTSFTGCAGKKVDYGVDTEVKEQKNASKVSDLRTDKPWVENITVQTKKGDVTLGIDAKILVPDCETMHVVGVEDVKLDTEYKKRFLDAYFGGGEYYYHDLEHYTVDELNSYIDLKSRELNEMNSRDDVDDSTKQELVQQMEQDLSGYRDLLTDAKISYTIASDLQSCDEYAGYKGDTFCEVTFKEHWVNAYVFKLDGKYYGPPSFKEENYDNVSQTFQEDNLTDSAGADGNECTRSAAESKKLVQDFMGKLGLSNQVERGECDCNWLGFNNGDENWESRSNTLWGYVYSYGTGIDGQVFKDSFDSSECDSMLREDTKDITLGDSIQLTVTDNGIIDVVIEYPVSVTSISGSVEMLSLKNIEQIIKEQLKNNADKYELEINKSFNNMQLTYFRLKDKNETAKYSYVPVWSFSRLVDSQKKNVILVNAIDGTIINSEDVF
>NC_012781.1|WP_012741796.1|830603_832043_+|hypothetical-protein
MGKKKKAIMTLIEALVLISLAGCAGKKVDYGVDTEVKSQNVVSSVKDIDTNTSFNDELTVNMGGTDEKVKITADIRVPECDTMSVTEVERIPCTKEFKEKVIKAYFGDSQVYYYDYAHMTKKELEEIIETLDRDNNSLSDDASEEILKWHDDMKTECTKALETAADVWTEATEYDSCDDFVGKIGDTWFHLQFSRPDDDNSVLSGIQSYPLDRCVKSVSDGDPDEMSTKFDDGYVKQYYGPKSLKEYDTVRYLNGDFIDGDLPVSDVNEANISFDEAKKKAGDFMQAIGIESMIKTGESDCEWEGYNKTEDNVYKEGDVHRAIWGYALEYSLGADDVVYSKSLNVFDYSAYNKFCPMDCPGYETGSFNVNEYGVYRFDIAEPVSIVKKQQKVELLPVSNIYKIARNELESHSDKYIVEADTQYRYLTLGYIRVKDSSDSQRFSYIPAWSLELLQRGEVESCPVFVNAIDGTVIEPEQIF
>NC_012781.1|WP_012741797.1|832184_833174_+|hypothetical-protein
MINKKKKYIGRLTLATAITSILFSGCGAAQKELAQTDRAFYEKISYQTVTVQSGSLTPQTTISLSAQGYTRFSYGATNTELTLEKVNVAVGDHVKKGDILVAFKSGEIQKKIEDYSGQISQNKLLAEHYRAIMKIDDTQDYSSDIAQLDKDTEVAQLYLDEAKEKLSRYQITASEDGTITAMDNSLLAGVFEPGSNLITEISGNGNYEADRPEGYDFNVGDVYTATASDIEFELKVKEVDDKKLVFEPVSDMSAVSDAQIFSMEVTCPAIENAVYVQKDAVHEKDGRYFVYTLDENGYRQAVWISVADQVGDYRIITEGLKSGDEVVLQ
>NC_012781.1|WP_012741798.1|833170_835423_+|hypothetical-protein
MKNRNLLSIKKLAVLGICVSFVAGGCGKMTESSIPKLEEPVALNEAYRPVEYGTIGSIQVLMATAVPRDYCNYYSANVNISQIYVEPGDTVNAGDVLAVCDVDEAKKQLQECKDALVHENETYEISAQISDTQIKLWESQAADTDEFSTEQIEKKESTEDDYNTQIATEQENERYDKQLHEYRVQKINEQMALYQQIVDDGTLKAVHSGLVTYTKKLTDGRSAAAYENIVIVSDTDDLVLDIKGTAINEYKYSDYDKKYVIVDGEKYDVTESQYTSEVLVLSKINNRYPDVCVESREKPFLTAGQMYPVYFEKTKANQALVVGKDSIYKDGDTRYVYVKNDEGGREKRIITTGESDENYTQVTEGLKEGELVYYNSTDQVPTKYSKYTVTRSDFDIANYGVRYSRSDAGTITETCDYEGQIVSVNVKQDDTVEKGMLLYVVDTGEGKAAITEGKNAIDSENESYAQKIADYDKQIKDLSEGGSSAEENNRQDEKPDTAYDEQQLKLNLQLLNLQKKLACADHIYQLSRLQSAYDSISAGNDGKGNISVYAKNDGKVSKVSVKAGDNVEEGSDILQITGNSTDVLLVQVKDSNSYKVYKDNIADVGERVSLELDGTTIYGSCIGFAGYGREAQKGYINQDDKGVHITGNTDSGYGNAAFYIKLDNGIPDDLTRASAVKFSYVSFKKVVVVPTSIIHKQVNPMDKDDISYYVWKIDGDSVVKQPVILGDYTSGSNTLVLYGIDEGDEICLAS
>NC_012781.1|WP_012741799.1|835407_838200_+|FtsX-like-permease-family-protein
MFGFVINKLKNRKWLNLCLLMGVALFIALFVCHPMFEKGAGNQILDRLFTDHATQQNEFPARMSREGTYAVADYPDSQSVLDKLSGYEKKWTEYVDINKVSSQQLITLSGGRADTEFGGPNNYFTIGYLPGLSEYADVVKSQTDTATFECSISEKTMDHYGLVAGEKIYLHVPDGSGKKEISFVISQICREKDINDPYWAKTLSDMGDVIFVSQDVFDEMMQYYSEDNISYSDFLMLDYRQINTENASLYDGYMEQFKDADKLYNDNIRDTLERFFTQQKTIKLMLWALELPCLVLLILFIRMISAQILSLEENDILVLRSRGATKLQVFILYLQQSGIIAFAGCVLGIVLGYIMCRAAASTDGFLRFTAKDISTYKFVWQMLVYAVAAAVIMVLFITVPVWKKSKDAISERSSRGRISKKKPLWEKCFIDVILLALSAYLLYNYNKQKSTLAISVLENRSIDPVMILDNSLFIFAAALLCVRLTGLIILLVDRLFKKHFSPAMYASFLQLKRTRYNQGFLAVFLIMTVAGGIFDANMARTMNSNMEKRIVYNVGCDAIYNEDFRLRIQKNKDGSVSWMYDEPDFGKYESLKNEGICDGVTRVLEDERVDISAGSGSVSDAYLMAINTKEFGETAKLQSDQNDDINDSHWFNYLNELAKEPDGVIISSNLAKDLGLKVGDSLNYSRYVPEAVDEDQIYASENVKVCAIVKGFPGYERYTYETDADKNVTEQEKYLIVANYATVVEKFGMTPYSVWMNLSKGKTVDDIYKNLTSAQQLIDENKNSATVQITNGMFTLSFILSLIVCSVGFLLYWVMTLKQRELQFGIYRAMGMRMREVKAMLLNEQIFLSFLPLLAGAGIGITATAMFVRLISIIYLPQKHNIGVNVYIYPSDMLELTGVLFVAVAVCYVVISRLLKSMKIAQALRLGEDS
>NC_012781.1|WP_012741800.1|838267_839008_+|ABC-transporter-ATP-binding-protein
MENAIIAQNIKRYFKAGEGTTVHALDGVSMEIKKGTLAILKGRSGSGKTTLLNILSALDMPTEGSVQFLDKNLEQMTEKDREMLRRYEMGFVFQSIALIPTMTAYENVEFALRLAKNKRQIQKNLTDMDNDIGDAKNDVINENTHDRVSELLERVGLSKRMDHMPDQLSGGEQQRVAIARAVVHRPKVVFADEPTGALDTASGFEVMRLFRELIDDEDITIVMTTHDPNLMELGDEVFELSDGIVI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_012781_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012781_2

1596898-1599829

TypeII

Consensus_repeat	Method
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	PILER-CR
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CRISPRCasFinder
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CRT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	PILER-CR

44 spacers

csn2,cas2,cas1,cas9,WYL

The CRISPR arrays of NC_012781_2

>merge|NC_012781|2|1596898-1599829|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAACTGCAGCACTTATAGCTATTTTTGTGACACTATTTTAGTAACTGAATAATTTACGTGACTGTAAAACGAGCAACAATGGAGAAAATACCACGAATGGATTTTAGTAACTGAATAATTTACGTGACTGTAAAACATGAAATAGACAAGCTAAAACAGGAAGTACATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAATTGCGGAGTATGCAAAAACAACAATGCTATTTTAGTAACTGAATAATTTACGTGACTGTAAAACGCATTTTAGCCTTGACACGCCAAGCCTAAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACTTGCATAGCAGCCAGCCGGAAAGAAAGGTGATTTTAGTAACTGAATAATTTACGTGACTGTAAAACCATGAAAAAATTCCTTCTTAAAGTAATTCTATTTTAGTAACTGAATAATTTACGTGACTGTAAAACATGGTGTACTTCCATCCATAGTCTGTCCAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAAATCTCTCATAGTTGCGCCCCCTAACAAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAAGAACAAATCTATCAAAGGAAGATATTCTATTTTAGTAACTGAATAATTTACGTGACTGTAAAACCCGCCGGACGGCTTTCTCCAATTATCTACAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACGATCACATACATCAATCAGATCATCGCCCAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACCAGGACTAACAAGAGCATTACAACAGCAAGATTTTAGTAACTGAATAATTTACGTGACTGTAAAACCCAAAGGATTATTAGAATGGTACTTATCAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACGATTGACCGTCTTAGTCTCATAAGCCTTGTATTTTAGTAACTGAATAATTTACGTGACTGTAAAACTATCGTGGGGCTTCGGCTTTGCGATTTACAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACACAACAGTGTATGCTGTCCGTGTCAGCGTATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAAAAATGTTTCTGATTGCAAAAGCAGATTAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACGCATATCCAGGACAGATTGAGTATCAGCTTATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAGGCAAAAAGCATATATGGAAACACATAGATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAATAACATACTTTACCTTGTGCCTTAGCGATTTTAGTAACTGAATAATTTACGTGACTGTAAAACTAAATAGACGCTATGGCTGGGCTTCACCATATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAAATCGTGGAAAAAGTGACGAAATAAGCAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACCGAACTGATAGACAGTGGAACTGTTAGAGAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACGTAAAGGCGGTGTTGGCTAATGAGCGATAGATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAGAGCCTTTATATCCTCTAAGCTGGTTACTATTTTAGTAACTGAATAATTTACGTGACTGTAAAACTGTCAAGTTTATTAGGGGGGTAGAAGATGATATTTTAGTAACTGAATAATTTACGTGACTGTAAAACCGTAGCAAATAATTCTAATGAAATCATTAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACGAGCTTCGGTGCTTTTGTGGGTGGATTTGGATTTTAGTAACTGAATAATTTACGTGACTGTAAAACCGTTTTCTCCGTATGTGCCCGGGATACGTGATTTTAGTAACTGAATAATTTACGTGACTGTAAAACGCTCACTTAAATACAGGACTGAAAGGCGGAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACATTCATATTGATTAAAGTTATACGCCTCTTATTTTAGTAACTGAATAATTTACGTGACTGTAAAACATAAACAATGAAATTCAGAATAGTCGATGCATTTTAGTAACTGAATAATTTACGTGACTGTAAAACACTGCCGGAAGTGGCAAGAGCGTAGACACGATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAGCTTTACAAGAACTTGGTCTTCACGGAAGATTTTAGTAACTGAATAATTTACGTGACTGTAAAACGGATGTAATGACTCACTCGTCAACCTATCTATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAAATCCGGTTGCAATCCCAATTATGCCAACCATTTTAGTAACTGAATAATTTACGTGACTGTAAAACATCATCATAAACAAGGCCATTATCAATGCAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAAGACGTGAAACTGAAGGAATATGCAACAAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACCAGAATGTTCGGTACCGCATTTTCACGCATATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAAGACAAGTTCACTATTGATGCAGCTAACAATTTTAGTAACTGAATAATTTACGTGACTGTAAAACCGAGCTCAAGCTTGCTAGCTCGCAGCACACATTTTAGTAACTGAATAATTTACGTGACTGTAAAACACATGTAGCTCTCAGGAGCGTTGGTCTTGTATTTTAGTAACTGAATAATTTACGTGACTGTAAAACTTTTTTTATTTTAATGTACATAAAACTATATTTTAGTAACTGAATAATTTACGTGACGCTATATA

>NC_012781|2|1|1596898-1598182|PILER-CR
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TGCAGCACTTATAGCTATTTTTGTGACACT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GAGCAACAATGGAGAAAATACCACGAATGG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATGAAATAGACAAGCTAAAACAGGAAGTAC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AATTGCGGAGTATGCAAAAACAACAATGCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCATTTTAGCCTTGACACGCCAAGCCTAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TTGCATAGCAGCCAGCCGGAAAGAAAGGTG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CATGAAAAAATTCCTTCTTAAAGTAATTCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATGGTGTACTTCCATCCATAGTCTGTCCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCTCTCATAGTTGCGCCCCCTAACAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGAACAAATCTATCAAAGGAAGATATTCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CCGCCGGACGGCTTTCTCCAATTATCTACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GATCACATACATCAATCAGATCATCGCCCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CAGGACTAACAAGAGCATTACAACAGCAAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CCAAAGGATTATTAGAATGGTACTTATCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GATTGACCGTCTTAGTCTCATAAGCCTTGT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TATCGTGGGGCTTCGGCTTTGCGATTTACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACAACAGTGTATGCTGTCCGTGTCAGCGT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAAAATGTTTCTGATTGCAAAAGCAGATTA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCATATCCAGGACAGATTGAGTATCAGCTT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAGGCAAAAAGCATATATGGAAACACATAGATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AATAACATACTTTACCTTGTGCCTTAGCG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TAAATAGACGCTATGGCTGGGCTTCACCAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCGTGGAAAAAGTGACGAAATAAGCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGAACTGATAGACAGTGGAACTGTTAGAGA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GTAAAGGCGGTGTTGGCTAATGAGCGATAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AGAGCCTTTATATCCTCTAAGCTGGTTACT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TGTCAAGTTTATTAGGGGGGTAGAAGATGAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGTAGCAAATAATTCTAATGAAATCATTA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GAGCTTCGGTGCTTTTGTGGGTGGATTTGG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGTTTTCTCCGTATGTGCCCGGGATACGTG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCTCACTTAAATACAGGACTGAAAGGCGGA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATTCATATTGATTAAAGTTATACGCCTCTT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATAAACAATGAAATTCAGAATAGTCGATGC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACTGCCGGAAGTGGCAAGAGCGTAGACACG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AGCTTTACAAGAACTTGGTCTTCACGGAAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GGATGTAATGACTCACTCGTCAACCTATCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCCGGTTGCAATCCCAATTATGCCAACC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATCATCATAAACAAGGCCATTATCAATGCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGACGTGAAACTGAAGGAATATGCAACAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CAGAATGTTCGGTACCGCATTTTCACGCAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGACAAGTTCACTATTGATGCAGCTAACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGAGCTCAAGCTTGCTAGCTCGCAGCACAC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACATGTAGCTCTCAGGAGCGTTGGTCTTGT


>NC_012781|2|2|1596898-1599829|CRISPRCasFinder
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TGCAGCACTTATAGCTATTTTTGTGACACT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GAGCAACAATGGAGAAAATACCACGAATGG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATGAAATAGACAAGCTAAAACAGGAAGTAC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AATTGCGGAGTATGCAAAAACAACAATGCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCATTTTAGCCTTGACACGCCAAGCCTAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TTGCATAGCAGCCAGCCGGAAAGAAAGGTG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CATGAAAAAATTCCTTCTTAAAGTAATTCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATGGTGTACTTCCATCCATAGTCTGTCCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCTCTCATAGTTGCGCCCCCTAACAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGAACAAATCTATCAAAGGAAGATATTCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CCGCCGGACGGCTTTCTCCAATTATCTACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GATCACATACATCAATCAGATCATCGCCCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CAGGACTAACAAGAGCATTACAACAGCAAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CCAAAGGATTATTAGAATGGTACTTATCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GATTGACCGTCTTAGTCTCATAAGCCTTGT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TATCGTGGGGCTTCGGCTTTGCGATTTACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACAACAGTGTATGCTGTCCGTGTCAGCGT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAAAATGTTTCTGATTGCAAAAGCAGATTA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCATATCCAGGACAGATTGAGTATCAGCTT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AGGCAAAAAGCATATATGGAAACACATAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AATAACATACTTTACCTTGTGCCTTAGCG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TAAATAGACGCTATGGCTGGGCTTCACCAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCGTGGAAAAAGTGACGAAATAAGCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGAACTGATAGACAGTGGAACTGTTAGAGA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GTAAAGGCGGTGTTGGCTAATGAGCGATAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AGAGCCTTTATATCCTCTAAGCTGGTTACT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TGTCAAGTTTATTAGGGGGGTAGAAGATGAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGTAGCAAATAATTCTAATGAAATCATTA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GAGCTTCGGTGCTTTTGTGGGTGGATTTGG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGTTTTCTCCGTATGTGCCCGGGATACGTG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCTCACTTAAATACAGGACTGAAAGGCGGA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATTCATATTGATTAAAGTTATACGCCTCTT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATAAACAATGAAATTCAGAATAGTCGATGC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACTGCCGGAAGTGGCAAGAGCGTAGACACG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AGCTTTACAAGAACTTGGTCTTCACGGAAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GGATGTAATGACTCACTCGTCAACCTATCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCCGGTTGCAATCCCAATTATGCCAACC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATCATCATAAACAAGGCCATTATCAATGCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGACGTGAAACTGAAGGAATATGCAACAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CAGAATGTTCGGTACCGCATTTTCACGCAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGACAAGTTCACTATTGATGCAGCTAACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGAGCTCAAGCTTGCTAGCTCGCAGCACAC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACATGTAGCTCTCAGGAGCGTTGGTCTTGT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TTTTTTTATTTTAATGTACATAAAACTAT
ATTTTAGTAACTGAATAATTTACGTGACGCTATATA

>NC_012781|2|1|1596898-1599829|CRT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TGCAGCACTTATAGCTATTTTTGTGACACT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GAGCAACAATGGAGAAAATACCACGAATGG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATGAAATAGACAAGCTAAAACAGGAAGTAC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AATTGCGGAGTATGCAAAAACAACAATGCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCATTTTAGCCTTGACACGCCAAGCCTAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TTGCATAGCAGCCAGCCGGAAAGAAAGGTG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CATGAAAAAATTCCTTCTTAAAGTAATTCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATGGTGTACTTCCATCCATAGTCTGTCCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCTCTCATAGTTGCGCCCCCTAACAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGAACAAATCTATCAAAGGAAGATATTCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CCGCCGGACGGCTTTCTCCAATTATCTACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GATCACATACATCAATCAGATCATCGCCCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CAGGACTAACAAGAGCATTACAACAGCAAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CCAAAGGATTATTAGAATGGTACTTATCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GATTGACCGTCTTAGTCTCATAAGCCTTGT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TATCGTGGGGCTTCGGCTTTGCGATTTACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACAACAGTGTATGCTGTCCGTGTCAGCGT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAAAATGTTTCTGATTGCAAAAGCAGATTA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCATATCCAGGACAGATTGAGTATCAGCTT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AGGCAAAAAGCATATATGGAAACACATAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AATAACATACTTTACCTTGTGCCTTAGCG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TAAATAGACGCTATGGCTGGGCTTCACCAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCGTGGAAAAAGTGACGAAATAAGCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGAACTGATAGACAGTGGAACTGTTAGAGA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GTAAAGGCGGTGTTGGCTAATGAGCGATAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AGAGCCTTTATATCCTCTAAGCTGGTTACT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TGTCAAGTTTATTAGGGGGGTAGAAGATGAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGTAGCAAATAATTCTAATGAAATCATTA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GAGCTTCGGTGCTTTTGTGGGTGGATTTGG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGTTTTCTCCGTATGTGCCCGGGATACGTG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCTCACTTAAATACAGGACTGAAAGGCGGA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATTCATATTGATTAAAGTTATACGCCTCTT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATAAACAATGAAATTCAGAATAGTCGATGC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACTGCCGGAAGTGGCAAGAGCGTAGACACG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AGCTTTACAAGAACTTGGTCTTCACGGAAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GGATGTAATGACTCACTCGTCAACCTATCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCCGGTTGCAATCCCAATTATGCCAACC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATCATCATAAACAAGGCCATTATCAATGCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGACGTGAAACTGAAGGAATATGCAACAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CAGAATGTTCGGTACCGCATTTTCACGCAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGACAAGTTCACTATTGATGCAGCTAACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGAGCTCAAGCTTGCTAGCTCGCAGCACAC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACATGTAGCTCTCAGGAGCGTTGGTCTTGT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TTTTTTTATTTTAATGTACATAAAACTAT
ATTTTAGTAACTGAATAATTTACGTGACGCTATATA

>NC_012781|2|2|1598212-1599764|PILER-CR
	TGCAGCACTTATAGCTATTTTTGTGACACT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GAGCAACAATGGAGAAAATACCACGAATGG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATGAAATAGACAAGCTAAAACAGGAAGTAC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AATTGCGGAGTATGCAAAAACAACAATGCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCATTTTAGCCTTGACACGCCAAGCCTAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TTGCATAGCAGCCAGCCGGAAAGAAAGGTG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CATGAAAAAATTCCTTCTTAAAGTAATTCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATGGTGTACTTCCATCCATAGTCTGTCCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCTCTCATAGTTGCGCCCCCTAACAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGAACAAATCTATCAAAGGAAGATATTCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CCGCCGGACGGCTTTCTCCAATTATCTACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GATCACATACATCAATCAGATCATCGCCCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CAGGACTAACAAGAGCATTACAACAGCAAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CCAAAGGATTATTAGAATGGTACTTATCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GATTGACCGTCTTAGTCTCATAAGCCTTGT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TATCGTGGGGCTTCGGCTTTGCGATTTACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACAACAGTGTATGCTGTCCGTGTCAGCGT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAAAATGTTTCTGATTGCAAAAGCAGATTA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCATATCCAGGACAGATTGAGTATCAGCTT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAACAGGCAAAAAGCATATATGGAAACACATAGATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AATAACATACTTTACCTTGTGCCTTAGCG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TAAATAGACGCTATGGCTGGGCTTCACCAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCGTGGAAAAAGTGACGAAATAAGCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGAACTGATAGACAGTGGAACTGTTAGAGA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GTAAAGGCGGTGTTGGCTAATGAGCGATAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AGAGCCTTTATATCCTCTAAGCTGGTTACT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	TGTCAAGTTTATTAGGGGGGTAGAAGATGAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGTAGCAAATAATTCTAATGAAATCATTA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GAGCTTCGGTGCTTTTGTGGGTGGATTTGG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGTTTTCTCCGTATGTGCCCGGGATACGTG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GCTCACTTAAATACAGGACTGAAAGGCGGA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATTCATATTGATTAAAGTTATACGCCTCTT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATAAACAATGAAATTCAGAATAGTCGATGC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACTGCCGGAAGTGGCAAGAGCGTAGACACG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AGCTTTACAAGAACTTGGTCTTCACGGAAG
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	GGATGTAATGACTCACTCGTCAACCTATCT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAATCCGGTTGCAATCCCAATTATGCCAACC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ATCATCATAAACAAGGCCATTATCAATGCA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGACGTGAAACTGAAGGAATATGCAACAA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CAGAATGTTCGGTACCGCATTTTCACGCAT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	AAGACAAGTTCACTATTGATGCAGCTAACA
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	CGAGCTCAAGCTTGCTAGCTCGCAGCACAC
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC	ACATGTAGCTCTCAGGAGCGTTGGTCTTGT
ATTTTAGTAACTGAATAATTTACGTGACTGTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012781.1\|WP_012742575.1\|1610811_1611354_-\|cell-division-protein-SepF	unknown	unknown	gnl\|CDD\|377370
NC_012781.1\|WP_012742549.1\|1585825_1586284_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|153097
NC_012781.1\|WP_012742554.1\|1589020_1590748_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_012781.1\|WP_012742558.1\|1595832_1596816_+\|hypothetical-protein	csn2	cd12217_csn2_CAS-II-A	gnl\|CDD\|213410
NC_012781.1\|WP_041254044.1\|1600347_1600866_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380313
NC_012781.1\|WP_012742550.1\|1586362_1587043_-\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NC_012781.1\|WP_012742574.1\|1610195_1610792_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|237811
NC_012781.1\|WP_012742562.1\|1601211_1602261_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_012781.1\|WP_012742556.1\|1594608_1595517_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NC_012781.1\|WP_041254043.1\|1591141_1594456_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|273840
NC_012781.1\|WP_012742566.1\|1604549_1605572_-\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|239203
NC_012781.1\|WP_012742572.1\|1608532_1609168_-\|cytidylate-kinase-like-family-protein	unknown	unknown	gnl\|CDD\|379060
NC_012781.1\|WP_012742563.1\|1602346_1603900_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NC_012781.1\|WP_012742553.1\|1588083_1588827_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NC_012781.1\|WP_012742573.1\|1609224_1610163_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_012781.1\|WP_041254566.1\|1595527_1595836_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NC_012781.1\|WP_012742559.1\|1600109_1600316_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226852
NC_012781.1\|WP_012742552.1\|1587851_1588106_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|225109
NC_012781.1\|WP_012742551.1\|1587393_1587840_+\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NC_012781.1\|WP_012742568.1\|1605929_1607684_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|237053

Protein	Function_ID	Function_description	E-value
NC_012781.1\|WP_012742575.1\|1610811_1611354_-\|cell-division-protein-SepF	gnl\|CDD\|377370	pfam04472, SepF, Cell division protein SepF. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This family also includes archaeal related proteins of unknown function.	8.90297e-29
NC_012781.1\|WP_012742549.1\|1585825_1586284_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	3.48691e-20
NC_012781.1\|WP_012742554.1\|1589020_1590748_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.21349e-40
NC_012781.1\|WP_012742558.1\|1595832_1596816_+\|hypothetical-protein	gnl\|CDD\|213410	cd12217, Stu0660_Csn2, Stu0660-like CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. This family of Csn2 proteins includes Stu0660, the proteins are larger than other (canonical) Csn2 proteins as they have an additional alpha-helical C-terminal domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	6.44967e-107
NC_012781.1\|WP_041254044.1\|1600347_1600866_+\|nitroreductase	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	1.33104e-44
NC_012781.1\|WP_012742550.1\|1586362_1587043_-\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	4.04036e-91
NC_012781.1\|WP_012742574.1\|1610195_1610792_-\|signal-peptidase-II	gnl\|CDD\|237811	PRK14767, PRK14767, lipoprotein signal peptidase; Provisional.	1.0817e-75
NC_012781.1\|WP_012742562.1\|1601211_1602261_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.5796e-36
NC_012781.1\|WP_012742556.1\|1594608_1595517_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.82489e-88
NC_012781.1\|WP_041254043.1\|1591141_1594456_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	1.72865e-117
NC_012781.1\|WP_012742566.1\|1604549_1605572_-\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|239203	cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.	6.09918e-80
NC_012781.1\|WP_012742572.1\|1608532_1609168_-\|cytidylate-kinase-like-family-protein	gnl\|CDD\|379060	pfam13189, Cytidylate_kin2, Cytidylate kinase-like family. This family includes enzymes related to cytidylate kinase.	2.36779e-76
NC_012781.1\|WP_012742563.1\|1602346_1603900_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NC_012781.1\|WP_012742553.1\|1588083_1588827_-\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	2.22461e-61
NC_012781.1\|WP_012742573.1\|1609224_1610163_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.09248e-121
NC_012781.1\|WP_041254566.1\|1595527_1595836_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.86169e-30
NC_012781.1\|WP_012742559.1\|1600109_1600316_+\|hypothetical-protein	gnl\|CDD\|226852	COG4443, COG4443, Uncharacterized protein conserved in bacteria [Function unknown].	4.04008e-32
NC_012781.1\|WP_012742552.1\|1587851_1588106_+\|GGDEF-domain-containing-protein	gnl\|CDD\|225109	COG2199, COG2199, c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms].	0.000382734
NC_012781.1\|WP_012742551.1\|1587393_1587840_+\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	8.18791e-85
NC_012781.1\|WP_012742568.1\|1605929_1607684_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|237053	PRK12315, PRK12315, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0

>NC_012781.1|WP_012742558.1|1595832_1596816_+|hypothetical-protein
MNVEITEFEKRFCFELCPVTQLCGQNVRKKNYIFESLRRYFGTFKYSESKNKWRDNVFIDNNQVGRKFFSVLSISNKTDIIQMIKMTKQSLLMEYVKNVIQDFDWQLHLRNLSEEIEIMFQIINDQVNKVGDIELSYSMADVWDMVQKSEVSGIDDTELSDKSNAELILILLNIVDNVLKNNPKKTLILFENLDHLVSLKEYVEIIHAADTISKKYDLYFIFSSSLNKYVCCDIDFLEGISVFGDVYFQMPEYNRLYLFLKENYPYEKEFSNEHVKKIICNIIQNIGQSNFLNTVEENVVCKLINKTLLLDDKIPDEKMPEMAFLKA
>NC_012781.1|WP_041254566.1|1595527_1595836_+|CRISPR-associated-endonuclease-Cas2
MRMFCMFDLPVETEEQRRNYRIFRKELIQEGFVMIQYSIYVRVCPSREFANRIENRIKKNLPLEGNVRLLCVTEKQYDDMKLLVGSRQTSETAIGTERLIII
>NC_012781.1|WP_012742556.1|1594608_1595517_+|type-II-CRISPR-associated-endonuclease-Cas1
MAFRVILIENEVTIKVKLNNLIITKCGEDIWIPLDDISMIVLDNLASNLSTRLMCQLAEQGIGLMLYNQQHLPTGFYSAYDNHSRASKVIGFQIDKEQDYYGKLWQQIVKIKIENQAKAYQIMTRDSDGPEKIIEFSKNILIGDKSNREAHAAKVYFNLLMGTSFSRGNEDILLNSGLDYGYAVIRGYIARACVGYGLNTQIGIHHKSEYNRFNLVDDLMEPLRPIVDIVAYNSMKNDKYFTPEHRRKLVSILNMKIMYREKKMYMCNMIENYIEQYASLIMKRTDNIVFPDVYNLIGEEYG
>NC_012781.1|WP_041254043.1|1591141_1594456_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKYILALDIGIASVGWAILDKESETVIEAGSNIFPEASAADNQLRRDMRGAKRNNRRLKTRINDFIKLWENNNLSIPQFKSTEIVGLKVRAITEEITLDELYLILYSYLKHRGISYLEDALDDTVSGSSAYANGLKLNAKELETHYPCEIQQERLNTIGKYRGQSQIINENGEVLDLSNVFTIGAYRKEIQRVFEIQKKYHPELTDEFCDGYMLIFNRKRKYYEGPGNEKSRTDYGRFTTKLDANGNYITEDNIFEKLIGKCSVYPDELRAAAASYTAQEYNVLNDLNNLTINGRKLEENEKHEIVERIKSSNTINMRKIISDCMGENIDDFAGARIDKSGKEIFHKFEVYNKMRKALLEIGIDISNYSREELDEIGYIMTINTDKEAMMEAFQKSWIDLSDDVKQCLINMRKTNGALFNKWQSFSLKIMNELIPEMYAQPKEQMTLLTEMGVTKGTQEEFAGLKYIPVDVVSEDIFNPVVRRSVRISFKILNAVLKKYKALDTIVIEMPRDRNSEEQKKRINDSQKLNEKEMEYIEKKLAVTYGIKLSPSDFSSQKQLSLKLKLWNEQDGICLYSGKTIDPNDIINNPQLFEIDHIIPRSISFDDARSNKVLVYRSENQKKGNQTPYYYLTHSHSEWSFEQYKATVMNLSKKKEYAISRKKIQNLLYSEDITKMDVLKGFINRNINDTSYASRLVLNTIQNFFMANEADTKVKVIKGSYTHQMRCNLKLDKNRDESYSHHAVDAMLIGYSELGYEAYHKLQGEFIDFETGEILRKDMWDENMSDEVYADYLYGKKWANIRNEVVKAEKNVKYWHYVMRKSNRGLCNQTIRGTREYDGKQYKINKLDIRTKEGIKVFAKLAFSKKDSDRERLLVYLNDRRTFDDLCKIYEDYSDAANPFVQYEKETGDIIRKYSKKHNGPRIDKLKYKDGEVGACIDISHKYGFEKGSKKVILESLVPYRMDVYYKEENHSYYLVGVKQSDIKFEKGRNVIDEEAYARILVNEKMIQPGQSRADLENLGFKFKLSFYKNDIIEYEKDGKIYTERLVSRTMPKQRNYIETKPIDKAKFEKQNLVGLGKTKFIKKYRYDILGNKYSCSEEKFTSFC
>NC_012781.1|WP_012742554.1|1589020_1590748_+|methyl-accepting-chemotaxis-protein
MNKGKIRTRRLTIRAKILIPSIIIVVLVCGLMGYNSYTRFEKSMVRMGVEEADMAATIVADSLDAKLVYKVTVGSEGTQVYQNLQGDLRKKQKACGIAFLYTLYTDGKKVYYGVDSDEDAAKVGDEFADSYAELEPVFGGKEYIQDYIDHTEDGDLITVYKPIEDNAGKVVAILGCDYDASSITAELQKAVVQTLQIGGICLILAILILTIIVSRITKGLMQVNAKIYDLVHNEGDLTQKLDVRSGDELELIAGNVNELLAYIRKIMIGISSGSMRLMSSSRKMVDHLSSADESITDVSATMQEMSAAMEETTSSLNQITEAIDEIYSSVERIAGNADAGKVSSQEMESRASGANDAAEEGQKKANIETEKMAASLNEKIAKSKSVEQIEILTSNIIEITEQTNLLALNASIEAARAGEAGRGFAVVADEIGKLAGNSADAAAKIRQVSAEVIQAVDELAEGSQQMIEFVRNSTEEGFGGLVATSENYATDANAMRAMMEQFAQTAEELRSTMDGIRESISAVNIAVEESAKGIAGVSESSVQLTGNVNDIQSEASDNNGIAEDLATEVGKFKLE
>NC_012781.1|WP_012742553.1|1588083_1588827_-|tRNA-2-thiocytidine(32)-synthetase-TtcA
MKLQKLYSKVRQALDDYNMITENDKIAIGVSGGKDSLTLLYALSGIRSFYPVPFELVAIAVDLGYEDFDLSPVKALCDELSVEFYVVKTDIGRISLEKSKNQASPCSWCAKLRKGALNDFALSVGCNKIAYAHHMDDIIETMFLSLLYEGQFYSFAPVTQLDGSGLAIIRPLMYVGESDVKGFKNKYNLPVCKNPCPYDGHTRREYVKQLVRQLNLEIPGVKKRLFSAIQNGNIDDWVKCTKPSDAS
>NC_012781.1|WP_012742552.1|1587851_1588106_+|GGDEF-domain-containing-protein
MKGIFMEQSFLFTVFWKDEMYIGDISEMMDNLGCITDGNNIVPITAAMGYAVKNDNSTKDINEIIREADSRMYEKKRSMKHRKA
>NC_012781.1|WP_012742551.1|1587393_1587840_+|D-tyrosyl-tRNA(Tyr)-deacylase
MRFVIQRVNHAKCTIDGNITGSIEKGLCVLIGIAETDTKEIADKMIKKLINMRIFADENDKTNLSINDVDGKLLLISQFTLYANCKKGNRPSFVEAGSPDMANELYEYCISECDKAVPGVQRGVFGADMKIELENDGPFTIVLDSDKL
>NC_012781.1|WP_012742550.1|1586362_1587043_-|TIGR00266-family-protein
MNYNIEGEPLPVVICNLEANETMITEKGAMSWMTPNMKMETTSNGGIGKMFGRAFSGESMFQNRYTSMGGPGMIAFASCFPGCIRPFQIAPGQEIIAQKSAFLASTSGVELSVFFQKRIGSGFFGGEGFIMQRLSGNGLAFLEFDGHIKEYELAPGQQLVIDTGYLAAMTGSCQLEIQTVPGIKNVVFGGEGLFNTVVTGPGRVWLQSMPVSQLAGAIRPFIPTGN
>NC_012781.1|WP_012742549.1|1585825_1586284_+|ferritin-like-domain-containing-protein
MILTEKETNAIEDLKTQEQACIEKYTKYSNQAKDPVLKELFEEIARDEQKHFDSLDQVIKGKVPSVDCNDSKGKNYNPAATYDSLGNSEDKKADCYLATDCIGTEKLVSGEYNSDVFVFGNSDIRKLLADIQIEEQNHAEMLWKYKTANGMA
>NC_012781.1|WP_012742559.1|1600109_1600316_+|hypothetical-protein
MADFKYEIVEHIGTLSESAKGWTKELNRISWNGGEPKYDIRDWAPEHEKMGKGVTLSEDEMAKLKDLL
>NC_012781.1|WP_041254044.1|1600347_1600866_+|nitroreductase
MSKVLEEMKTRRSIRKFKPDMIPQDILDRIIEAGTFAANGRGAQNTIIIQVTNKEIRDEIAKRNADIMGSNTDPFYGAPVILIVLGKKDWPTHVYDGSLVMGNLMLAAHDLGIGSCWIHRAKEEFESDWGKELLKSLGIEDEYEGIGHCALGYVDGDYPDVIPRKENRVFYI
>NC_012781.1|WP_012742562.1|1601211_1602261_+|WYL-domain-containing-protein
MSETENNELTAGKQSKEPRSNQKLKLLYLAKILLNNTDANHDITLDEILNKLHAYDVTAARKSLYDDIAQLNDFGIKTQKTQYGRTVHYKVIGRAFELAELKLLVDSVAAAKFITEEKSNELIKKLESLTSRQEAATLQRQVYVAGRVKTMNSDIMKNVDAIHNAIANNSSLSFQYCRWNTKKELEVKHDGARYHVSPWGLLWNDGNYYLIGYDHDTQVKDIRHYRVDKMKNILIENKVREGREKLKKLDIASYGKSKFGMYNGEEIKAEILCKNSAIGVLIDRFGTDVTILKKDEAHSRVFVKVADNKLFIHWIMAMGDNFKIIGPENLVKEVHDELNRLAKQYELAD
>NC_012781.1|WP_012742563.1|1602346_1603900_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MSILNVEHLSHGFGDRAIFEDVSFRLLKGEHIGLVGANGEGKSTFMNIITGRLMPDEGKIEWAKKVRVGYLDQHTALEKGMTIGSVLSSAFDFLYDMENEMNDIYARLGDVDEDEMNKLMEEAGTIQDMLTMHDFYMIDAKVEEVARALGLLDLGLDKDVTDLSGGQRTKVLMGKLLLEKPDILLLDEPTNYLDVEHIEWLKRYLNDYENAFILISHDIPFLNSVVNLIYHMDNKKLDRYVGDYDKFMEVYEMKKAQLEAAYNKQQQEIKELKDFVARNKARVATRNMAMSRQKKLDKMDVIELAAEKPKPEFNFKTARTPGRYIFQTNGLVIGYDDPLSSALDLEMERGQKIVLTGANGIGKTTLLKSILGLIKPLSGSVTLGDYLEIGYFEQEMDQSVTTTCIEEIWNEFPAFSQYEVRSALAKCGLTTKHIESQVRVLSGGEQAKVRLCKLINRETNILLLDEPTNHLDVDAKDELKRALKEYKGSILMVCHEPDFYDGLATDVWDCSKWTTRL
>NC_012781.1|WP_012742566.1|1604549_1605572_-|alpha-hydroxy-acid-oxidizing-protein
MNYTECIENARPRLGKYCKACPECNGLACKNQMPGPGSKGIGDTAIRNYDKWKQIRVNMDTIAENKPVDTSLSLFGRTFKYPVFAGPVGAVQLHYGDCLDDVTYNDILVSACAKNGIAAFTGDGTDPNVMVAATKAIKNADGAGIPTVKPWNIETIREKMELVHESGAFAVAMDVDAAGLPFLKNLDPPAGSKTVSELCDIIQMAGTPFIVKGIMTVKGALKAKEAGASAIIVSNHGGRVLDQCPATAEVLESIVKALEGSGIKILVDGGIRSGTDVFKALALGADGVLITRPFVTAVYGGKADGVRAYIDKIGTELEDTMKMCGVSSLDEITRDCVMTF
>NC_012781.1|WP_012742568.1|1605929_1607684_+|1-deoxy-D-xylulose-5-phosphate-synthase
MYLEKINGPEDVKKIKIDELPVLAQEIRDALLVRASKHGGHFGPNFGMVEATIALHYVFESPKDKIVYDVSHQSYPHKMLTGRKEAYLSEQHYDDVSGYTNPNESEHDFFTVGHTSTSVSLAAGLAKARNLKGENGNVIAVIGDGSLSGGEALEGLDFAAELQSNFIIIVNDNDMSIAENHGGLYQNLALLRKTDGQTECNLFKAMGLDYVYVDRGNDVAALIKAFKEVKDSTKPVVVHINTLKGKGYAPAEKCKEQWHYSGPFDIETGKPLFDNVEEDYSSVTCEYLLEKMKNDSSVVAITSGTPTVMGFTEDKRKEAGSQFVDVGIAEETAVALASGIAVNGGKPFYGVYSSFVQRTFDQVSQDVCINNSPITMVIYQGSVYGMNDVTHLGFQDIPMLSNIPNLVYLAPATKEEYLAMLDWSMEQTSYPVAIKLPGGPMISDGSRVTKDFGRLNRYEVVQTGEKIAIIGLGTFFELAKEAAKLLKEEAGINATVINPYYITGLDEALLTKLKQNHDTVITLEDGILDGGFGEKIARFYGASNMKVMNYGLKKEFLDRYDVDAVLKENHLTAEQIVEDVLSIL
>NC_012781.1|WP_012742572.1|1608532_1609168_-|cytidylate-kinase-like-family-protein
MGSNEIYTIGREFGSLGKQVGQELAKRLGIKFYDKELLQKAAKESGLCEEIFESHDEKPTNSFLYSLVMDTYTGGSYSTAPFLDMPLNHKVFLAQFDAIKKIAANESCVIVGRCADYALADEPHCLNIFIRSNMDDRIKRISERLNVPENKAKDIIKKKDKERSSYYNYYTSKKWGDARSYDLCLNTSQISVEDSIELILKYRECMRNHNK
>NC_012781.1|WP_012742573.1|1609224_1610163_-|RluA-family-pseudouridine-synthase
MNRDTFEVQSEQEGERLDKYLSSIYPDISRSFFQRILKENQILVNDKPQKANYRLKTDDIVDVTIPDAVQTPILPQDIPLDILYEDDDVLVVNKPKGMVVHPSAGHYSDTLVNAIMYHCKDSLSGINGEIRPGIVHRIDMDTTGSLIVCKNDESHIKISEQIKDHSCNRIYVGIVCGNVKDDEGTIEGAIGRNPNDRKKMAINEKNGKPAVTHYKVLERFGDYTYMQFKLETGRTHQIRVHMASINHPLLGDMLYSSYSPTKNRFKGLEGQCLHAKTIGFVHPKTGEYMEFDAPLPKYFANLLEVLYNINNK
>NC_012781.1|WP_012742574.1|1610195_1610792_-|signal-peptidase-II
MKKNKTKKQMCTAGIIALILVAIDQLTKYLAVINLKQSSTGVFVLIPGVFEFRYLENQSAAFGVDLLSIIQNIFHFTYWSENPLAFLRAKMIFFSVITIAVVILLCVWYRKIPVSKRFRLLNVVVILFVAGALGNLIDRIVNNYVVDFFYFSLINFPIFNVADIYVTVAAFMFIILGLFYYKEEDFSLIFPDKKHENR
>NC_012781.1|WP_012742575.1|1610811_1611354_-|cell-division-protein-SepF
MSFIDKILDKMSLNSEDDEEFDNEDYYLDDEEEEELPRNPFRRKKEAVEEETAIKSTRRDTTPKEKPVKTTSKITPISKSSRKQVASDMEVCVIKPSSIEDEIEITDTLLNGRTVVINMEGLNVDVAQRIIDFTSGSAYALHGNLQKISNFIFIATPHGVDISGDIQSLMDSFDLPGSSY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_012781_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012781_3

2352853-2354472

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CRISPRCasFinder
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CRT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	PILER-CR

24 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_012781_3

>merge|NC_012781|3|2352853-2354472|CRISPRCasFinder,CRT,PILER-CR
ATTTCAATTCACACTCCCACGAGAGGAACGACGGCAGGTACAGGCACAGCCACTAACCTTGCAGAATTTCAATCCACGTTCCCACGAGAGGAGCGACCATATTACACAATCGTTCGTATTCAGGTTCTTCAATTTCAATCCACGCTCCCACGAGAGGAGCGACCATTTCCAACGGACTTTGTGACGGCTTTTATGCCATATTTCAATCCACGCTCCCACGAGAGGAGCGACTTCACCGGGGACTACACCTTTGAGGTGACACTGATTTCAATACACGCTCCCACGAGAGGAGCGACACATAACGCCGGAACAGTGGGAACAGCTAAAGAATTTCAATACACGCTCCCACGAGAGGAGCGACAATGGGTGATGGCTATCAAGAGGTGCAGGAAGTAATTTCAATCCACGCTCCCACGAGAGGCGCGACGTCGTTAAAAGCCACGGAATATAAGTTAAGCATTGATTTCAATCCACGCTCCCACGAGAGGAGCGACAATTATATTCCAGATGAGTTTAAGTCGTACATTATTTCAATCCACGCTCCCACGAGAGGAGCGACTATGACATCAGACGAGACCGGCATGGTGGCTATATTTCAATCCACGCTCCCACGAGAGGAGCGACACTGATGAATGGCTGTATGATGAAGAATATTTGAATTTCAATCCACGCTCCCACGAGAGGAGCGACTTTAGCCTTGACAAGCCAAAACACAAGACAATTTTATTTCAATCCACGCTCCCACGAGAGGAGCGACCATTTAACTAATGTCGTTTGATAAGCTGATATATATTTCAATCCACGCTCCCACGAGAGGAGCGACGGTTCTGATACTAAACCAACTGCTGTTACTAATATTTCAATCCACGCTCCCACGAGAGGAGCGACAAAAATGTCGTGTGTGGTTAAATAATCAGCGTAATTTCAATCCACGCTCCCACGAGAGGAGCGACATTTTTGGGTAAAACATAAGGGCTATAATTTCTATATTTCAATCCACGCTCCCACGAGAGGAGCGACAGACCGTCATGATCCGACAGACATATGTTATATATTTCAATCCACGCTCCCACGAGAGGAGCGACGTGTATTGCTGCTCTTGTTTTCGGCTGATCCACACATTTCAATCCACGCTCCCACGAGAGGAGCGACTCTTTTCACTGCGTAATAGCTTAAGAATTTTATCATTTCAATCCACGCTCCCACGAGAGGAGCGACGCTGTTGAGTTTTTCCAAGTTCGACAGAGCGAGAATTTCAATCCACGCTCCCACGAGAGGAGCGACGTTTCCCTGTCTTCCAATTTTTCGCCCGCACGATATATTTCAATCCACGCTCCCACGAGAGGAGCGACCTGATAAATCTATTCTGTGGTCTCGGAGCATAAGATTTCAATCCACGCTCCCACGAGAGGAGCGACCGTCCTTGTTCGGAGTGGTTTAAGACTTTCTCGGTATTTCAATCCACGCTCCCACGAGAGGAGCGACGGACTGCTGTATTTTAAGCCGGCCTGGTGCAGTAAATTTCAATCCACGCTCCCACGAGAGGAGCGACAGTACTTGCCGTAACAATCGGCATCAAGGTATTCAAATTTCAATCCACGCTCCCACGAGAGGAGCGAC

>NC_012781|3|3|2352853-2354472|CRISPRCasFinder
ATTTCAATTCACACTCCCACGAGAGGAACGAC	GGCAGGTACAGGCACAGCCACTAACCTTGCAGA
ATTTCAATCCACGTTCCCACGAGAGGAGCGAC	CATATTACACAATCGTTCGTATTCAGGTTCTTCA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CATTTCCAACGGACTTTGTGACGGCTTTTATGCCAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TTCACCGGGGACTACACCTTTGAGGTGACACTG
ATTTCAATACACGCTCCCACGAGAGGAGCGAC	ACATAACGCCGGAACAGTGGGAACAGCTAAAGA
ATTTCAATACACGCTCCCACGAGAGGAGCGAC	AATGGGTGATGGCTATCAAGAGGTGCAGGAAGTA
ATTTCAATCCACGCTCCCACGAGAGGCGCGAC	GTCGTTAAAAGCCACGGAATATAAGTTAAGCATTG
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AATTATATTCCAGATGAGTTTAAGTCGTACATT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TATGACATCAGACGAGACCGGCATGGTGGCTAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	ACTGATGAATGGCTGTATGATGAAGAATATTTGA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TTTAGCCTTGACAAGCCAAAACACAAGACAATTTT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CATTTAACTAATGTCGTTTGATAAGCTGATATAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GGTTCTGATACTAAACCAACTGCTGTTACTAAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AAAAATGTCGTGTGTGGTTAAATAATCAGCGTA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	ATTTTTGGGTAAAACATAAGGGCTATAATTTCTAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AGACCGTCATGATCCGACAGACATATGTTATAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GTGTATTGCTGCTCTTGTTTTCGGCTGATCCACAC
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TCTTTTCACTGCGTAATAGCTTAAGAATTTTATC
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GCTGTTGAGTTTTTCCAAGTTCGACAGAGCGAGA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GTTTCCCTGTCTTCCAATTTTTCGCCCGCACGATAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CTGATAAATCTATTCTGTGGTCTCGGAGCATAAG
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CGTCCTTGTTCGGAGTGGTTTAAGACTTTCTCGGT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GGACTGCTGTATTTTAAGCCGGCCTGGTGCAGTAA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AGTACTTGCCGTAACAATCGGCATCAAGGTATTCAA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC

>NC_012781|3|2|2352853-2354472|CRT
ATTTCAATTCACACTCCCACGAGAGGAACGAC	GGCAGGTACAGGCACAGCCACTAACCTTGCAGA
ATTTCAATCCACGTTCCCACGAGAGGAGCGAC	CATATTACACAATCGTTCGTATTCAGGTTCTTCA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CATTTCCAACGGACTTTGTGACGGCTTTTATGCCAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TTCACCGGGGACTACACCTTTGAGGTGACACTG
ATTTCAATACACGCTCCCACGAGAGGAGCGAC	ACATAACGCCGGAACAGTGGGAACAGCTAAAGA
ATTTCAATACACGCTCCCACGAGAGGAGCGAC	AATGGGTGATGGCTATCAAGAGGTGCAGGAAGTA
ATTTCAATCCACGCTCCCACGAGAGGCGCGAC	GTCGTTAAAAGCCACGGAATATAAGTTAAGCATTG
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AATTATATTCCAGATGAGTTTAAGTCGTACATT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TATGACATCAGACGAGACCGGCATGGTGGCTAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	ACTGATGAATGGCTGTATGATGAAGAATATTTGA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TTTAGCCTTGACAAGCCAAAACACAAGACAATTTT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CATTTAACTAATGTCGTTTGATAAGCTGATATAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GGTTCTGATACTAAACCAACTGCTGTTACTAAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AAAAATGTCGTGTGTGGTTAAATAATCAGCGTA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	ATTTTTGGGTAAAACATAAGGGCTATAATTTCTAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AGACCGTCATGATCCGACAGACATATGTTATAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GTGTATTGCTGCTCTTGTTTTCGGCTGATCCACAC
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TCTTTTCACTGCGTAATAGCTTAAGAATTTTATC
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GCTGTTGAGTTTTTCCAAGTTCGACAGAGCGAGA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GTTTCCCTGTCTTCCAATTTTTCGCCCGCACGATAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CTGATAAATCTATTCTGTGGTCTCGGAGCATAAG
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CGTCCTTGTTCGGAGTGGTTTAAGACTTTCTCGGT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GGACTGCTGTATTTTAAGCCGGCCTGGTGCAGTAA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AGTACTTGCCGTAACAATCGGCATCAAGGTATTCAA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC

>NC_012781|3|3|2352918-2354472|PILER-CR
ATTTCAATCCACGTTCCCACGAGAGGAGCGAC	CATATTACACAATCGTTCGTATTCAGGTTCTTCA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CATTTCCAACGGACTTTGTGACGGCTTTTATGCCAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TTCACCGGGGACTACACCTTTGAGGTGACACTG
ATTTCAATACACGCTCCCACGAGAGGAGCGAC	ACATAACGCCGGAACAGTGGGAACAGCTAAAGA
ATTTCAATACACGCTCCCACGAGAGGAGCGAC	AATGGGTGATGGCTATCAAGAGGTGCAGGAAGTA
ATTTCAATCCACGCTCCCACGAGAGGCGCGAC	GTCGTTAAAAGCCACGGAATATAAGTTAAGCATTG
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AATTATATTCCAGATGAGTTTAAGTCGTACATT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TATGACATCAGACGAGACCGGCATGGTGGCTAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	ACTGATGAATGGCTGTATGATGAAGAATATTTGA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TTTAGCCTTGACAAGCCAAAACACAAGACAATTTT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CATTTAACTAATGTCGTTTGATAAGCTGATATAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GGTTCTGATACTAAACCAACTGCTGTTACTAAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AAAAATGTCGTGTGTGGTTAAATAATCAGCGTA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	ATTTTTGGGTAAAACATAAGGGCTATAATTTCTAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AGACCGTCATGATCCGACAGACATATGTTATAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GTGTATTGCTGCTCTTGTTTTCGGCTGATCCACAC
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	TCTTTTCACTGCGTAATAGCTTAAGAATTTTATC
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GCTGTTGAGTTTTTCCAAGTTCGACAGAGCGAGA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GTTTCCCTGTCTTCCAATTTTTCGCCCGCACGATAT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CTGATAAATCTATTCTGTGGTCTCGGAGCATAAG
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	CGTCCTTGTTCGGAGTGGTTTAAGACTTTCTCGGT
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	GGACTGCTGTATTTTAAGCCGGCCTGGTGCAGTAA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC	AGTACTTGCCGTAACAATCGGCATCAAGGTATTCAA
ATTTCAATCCACGCTCCCACGAGAGGAGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012781.1\|WP_012743316.1\|2356639_2357551_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_012781.1\|WP_012743300.1\|2344273_2345293_-\|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224529
NC_012781.1\|WP_012743303.1\|2348160_2349069_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NC_012781.1\|WP_012743317.1\|2357551_2359288_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_012781.1\|WP_012743314.1\|2354949_2355981_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_012781.1\|WP_012743299.1\|2343414_2344293_-\|sulfate-ABC-transporter-permease-subunit-CysT	unknown	unknown	gnl\|CDD\|131194
NC_012781.1\|WP_012743319.1\|2359953_2360394_-\|hypothetical-protein	unknown	unknown	unknown
NC_012781.1\|WP_012743313.1\|2354649_2354940_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_012781.1\|WP_022292446.1\|2351083_2352676_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
NC_012781.1\|WP_012743315.1\|2355977_2356640_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NC_012781.1\|WP_041254163.1\|2349068_2349929_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	unknown	unknown	gnl\|CDD\|99814
NC_012781.1\|WP_012743301.1\|2345363_2346299_-\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273463
NC_012781.1\|WP_012743302.1\|2346568_2348131_-\|Na+/H+-antiporter-NhaC-family-protein	unknown	unknown	gnl\|CDD\|224671
NC_012781.1\|WP_015568209.1\|2363213_2364203_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381315
NC_012781.1\|WP_012743320.1\|2360383_2360845_-\|DUF3990-domain-containing-protein	unknown	unknown	gnl\|CDD\|379042
NC_012781.1\|WP_012743318.1\|2359284_2359953_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_012781.1\|WP_012743321.1\|2361078_2363193_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_012781.1\|WP_015517339.1\|2342504_2343359_-\|sulfate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226665
NC_012781.1\|WP_012743305.1\|2349981_2350914_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651
NC_012781.1\|WP_012743297.1\|2341331_2342393_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361

Protein	Function_ID	Function_description	E-value
NC_012781.1\|WP_012743316.1\|2356639_2357551_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.03941e-146
NC_012781.1\|WP_012743300.1\|2344273_2345293_-\|sulfate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224529	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	2.19888e-154
NC_012781.1\|WP_012743303.1\|2348160_2349069_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	1.10742e-176
NC_012781.1\|WP_012743317.1\|2357551_2359288_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_012781.1\|WP_012743314.1\|2354949_2355981_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.58689e-180
NC_012781.1\|WP_012743299.1\|2343414_2344293_-\|sulfate-ABC-transporter-permease-subunit-CysT	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	1.34252e-104
NC_012781.1\|WP_012743313.1\|2354649_2354940_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.30617e-26
NC_012781.1\|WP_022292446.1\|2351083_2352676_-\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	9.53778e-34
NC_012781.1\|WP_012743315.1\|2355977_2356640_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	7.77125e-28
NC_012781.1\|WP_041254163.1\|2349068_2349929_-\|dihydroorotate-dehydrogenase-electron-transfer-subunit	gnl\|CDD\|99814	cd06218, DHOD_e_trans, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.	6.26987e-105
NC_012781.1\|WP_012743301.1\|2345363_2346299_-\|cysteine-synthase-A	gnl\|CDD\|273463	TIGR01136, Cysteine_synthase, cysteine synthase. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. [Amino acid biosynthesis, Serine family].	8.46564e-155
NC_012781.1\|WP_012743302.1\|2346568_2348131_-\|Na+/H+-antiporter-NhaC-family-protein	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	4.45658e-64
NC_012781.1\|WP_015568209.1\|2363213_2364203_-\|aldo/keto-reductase	gnl\|CDD\|381315	cd19089, AKR_AKR14A1_2, AKR14A family of aldo-keto reductase (AKR). Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ), also called GAP reductase, is a founding member of aldo-keto reductase family 14 member A1 (AKR14A1). It catalyzes the stereospecific, NADPH-dependent reduction of L-glyceraldehyde 3-phosphate (L-GAP). It is also involved in the stress response as a methylglyoxal reductase which converts the toxic metabolite methylglyoxal to acetol in vitro and in vivo. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2). It catalyzes the conversion of 3-hydroxybutanal (3-HB) to 1,3-butanediol (1,3-BDO) by using NADPH as a cofactor.	0
NC_012781.1\|WP_012743320.1\|2360383_2360845_-\|DUF3990-domain-containing-protein	gnl\|CDD\|379042	pfam13151, DUF3990, Protein of unknown function (DUF3990). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	1.76408e-70
NC_012781.1\|WP_012743318.1\|2359284_2359953_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.2759e-101
NC_012781.1\|WP_012743321.1\|2361078_2363193_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	3.51891e-54
NC_012781.1\|WP_015517339.1\|2342504_2343359_-\|sulfate-ABC-transporter-permease	gnl\|CDD\|226665	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism].	2.7611e-89
NC_012781.1\|WP_012743305.1\|2349981_2350914_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	1.04963e-96
NC_012781.1\|WP_012743297.1\|2341331_2342393_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	1.02854e-133

>NC_012781.1|WP_022292446.1|2351083_2352676_-|AAA-family-ATPase
MGIYVNPTGRSFELAINSEIFVDKSGLIKETNKCINTLQRYMCVSRPRRFGKSMAMDMLSAYYGRKTDAENLFKGLKISHDESYDRHINKYDVLKINMQDFLSVTHSVDDMLKMLCEYITDDFSIECKDIIFRDKSNIVRVMQDVFMSTGRPFVILIDEWDCLFREFTQDKEAQKKYLDFLRGWLKDKDYIALAYMTGILPIKKYGSHSALNMFTEYSMTDMGALAEYFGFTDDEVRELCDRYDMDFEEARAWYNGYKLVSHSKYGVKKYAMYSPKSVVEAMLKHKFGTYWNQTETYEALKVYIQMNMDGLKDAVIKMLAGESEKINTGTFENDMTSFATKDDVLTLLVHLGYLTYDSETEEVSIPNREVSKEYLNAISTMDWDEVSKSIKASQKLLESLWNMNGAAVADGIDKAHNEISILRYNDENSLSCTINLAFYSAREYYSIVRELPTGKGFADVCFIPRVSHLDKPAVVIELKYDKNVDGAISQIKSRQYVEALKDYKGNLLLVGINYDKKTKEHQCVIEKWKL
>NC_012781.1|WP_012743305.1|2349981_2350914_-|orotidine-5'-phosphate-decarboxylase
MINKLVDKIKKTNAPIVVGLDPMLSYVPEHITKKAFDELGETPAGAAEAIWQYNKAIVDATYDLIPAVKPQIAMYEQFGVEGLKTFQKTVDYCHEKDLVVIGDVKRGDIGSTSAAYATGHLGKVQIGSKSYSTFDEDFATVNPYLGTDGIKPFVDVCKEEKKGIFILVKTSNPSSGEFQDRMIDGRPLYEWVGEKVAEWGADCMGDSYSYVGAVVGATYPEQGKILRKVMPKSFILVPGYGAQGGKGADLVHFFNEDGLGAIVNSSRGIICAYKQDKYKDMGITAENFADASRKAVEDMIEDISGALANR
>NC_012781.1|WP_041254163.1|2349068_2349929_-|dihydroorotate-dehydrogenase-electron-transfer-subunit
MAEKFEEIAVVVDQSSLGNGIYDLTLKTDKIAKAAKAGQFVSVYSNDKSKLLPRPISLCGINRDDDTIRLVYRVTGEGTGTEEFSKLVRGDKVRILGPLGNGFTVQPGKKAFLIGGGIGVPPMLQLAKDINAGIVQTSGEEKNSEQAAMEGEEIKTAVCDMNIVMGYRDENTFLLDEFKEQAASFVATEDGSVGTKGNVIDAIKENALEADVIYACGPMPMLRALKAYAAEHDMDCFISMEERMACGIGACLACVCKTKDKDAHSNVNNKRICKEGPVFDAKEVEL
>NC_012781.1|WP_012743303.1|2348160_2349069_-|dihydroorotate-dehydrogenase
MSNMSVNVAGVEWKNPVTVASGTFGSGAEYSEFVDLNRLGAVTTKGVANKPWEGNPTPRVAEVYGGMLNAVGLQNPGIELFCKRDIPFLKQFDTRIVVNVCGHSLDEYLDVVKRLADEPIDMMEINISCPNVKEGGIAFGTDPKGVETITSEIKKYAKQPVIMKLSPNVTSIAEIARAAEAGGADAVSLINTITGMKIDINRRSFVLANKTGGMSGPAVHPVAVRMVYETAHAVNIPIIGMGGITNAADAIEMILAGATAVSVGTANFVNPKTTEQIVDGIAEYMDRYGVKDISELVGAVDR
>NC_012781.1|WP_012743302.1|2346568_2348131_-|Na+/H+-antiporter-NhaC-family-protein
MILAAEYVPSMYATVWALVPPVVAIVLALITKEVYSSLFVGIVIGGLFYGNAFQPGFSAERSVLHIFEDGLVGVLSDSYNVGILIFLVVLGVMVSMMNKAGGSAAFGEWASEHIKTRIGAQLSAIILGVLIFIDDYFNCLTVGSVMRPVTDKHQVSRAKLAYLIDATAAPVCIIAPISSWAAAVTGFVKGEDGFSIFIKAIPYNYYALFTIIAMVTLVVLQVDFGPMAKHEANAQKGDLFTTGDRPYAETKQDVIKGKGKVIDLVFPILVLIISCIIGMIYTGGFFDGTGFVDAFAGSDASIGLMLGSFFALIITICFYSIRRVLSFTDCCNSIPEGFKAMVPAILILTFAWTLKTMTESLGAKEFVAGLVGGVSGPLLGLFPAIIFVVGAFLAFATGTSWGTFGILIPIVVNIFSGTNHTMMIISISACMAGAVCGDHCSPISDTTIMASAGAQCNHMNHVSTQLPYAVLVAAISCLTYIIAGFVRNPVVPFIIGVLILIGTFVGIKYITRTDKANEQA
>NC_012781.1|WP_012743301.1|2345363_2346299_-|cysteine-synthase-A
MAKIAKQLTELIGHTPLLELTNYEKALGLEAKIIAKLEYFNPLGSVKDRVAAAMIEQGIKDGKINQDTIIIEPTSGNTGIGLAFVAASKGLHLILIMPDTMSVERRKIVTALGAEIKLTPGREGMKGAIDEAQRLKEHYGNAFIPQQFENQANPDIHRATTAQEIWEDTDGKVDIFVSSVGTGGTCTGTGLGLRDHNPDVRIVAVEPKSSPVLSGGRPGPHKIQGIGAGFIPKVMRMDIVDEVIPVENEAAFDKAREVAKSDGLLVGISSGAAIYAATELAKRTENKGKNIVVLLPDTGERYLSTQLFTVN
>NC_012781.1|WP_012743300.1|2344273_2345293_-|sulfate-ABC-transporter-substrate-binding-protein
MRNIHKYTAAMLSAVMVVSLFLTGCSGKKDDGTVTITNVSYDPTREFYEKYNKIFESYYESEHGKRINVIQSHGGSGAQARSVVEGCNADVVTLALEHDIDLIQNTGLIEKGWIDEFPKSSAPYTSTIVFLVRKGNPKHISDWDDLVKKNVDVITPDPKSSGGACWNFLAALSYAKTNYDSQKEQKTFMRKLYENVTIMDSGARGSTTTFVENGQGDVLIAWENEALTTMDSYPGKYEIVNPSVSILAQPSVAIVDDNAKSNGTEAASKEYLQYLYSDEAQRLIGESGYRPTNQDILNQFSDKFDLNIRLWSIDDYGGWDEAYKTYFDDGAMFDEIYGN
>NC_012781.1|WP_012743299.1|2343414_2344293_-|sulfate-ABC-transporter-permease-subunit-CysT
MKFTATDKTAKKKTKSKNIKTRVIPGYHLSLGIVVTMLSVIVLIPLASVLVYSLKISPGDFVALIMKENVRNAFITSITSSFIAAIINVVFGLIVAWTLVKYDFPGKWLLDGLIELPFALPTAVAGITLSKLYSGTGFFGKGLSKLGIDVAYTQAGIVVALVFVGIPFVIRAVQPVLEKMDNTYEEAAYMLGATPSKTFFKVILPELRPALLTGFGLAFARGIGEYGSVIYISGNSAKHRTQVVSYVIMQKLGYIDYASATAIALVMLVISFLLLLFVNIVQVKQSQRTNLL
>NC_012781.1|WP_015517339.1|2342504_2343359_-|sulfate-ABC-transporter-permease
MTEQVKLERRKKITKIILVTVTVLFIFVMLVVPLFSVMASALKEGLGFYLKAISTSYVLSALKVTLIATVFAVVINTFFGIWTAWLLTRFSFKGKQVLATLIDIPFSISPVIVGLAYLMTFGRLGWFYPVIRWFNEIFGTNVRITFAIPGVVLATIFVTFPYVSREIIPVLNAEGKDEEEAAALMGASGFTIFRKITLPQMKWSLIYGIILCTARALGEFGAVNALSKTRGETFTLPLEIDALYMSGTDSSITSAFAVSSILLIIALIILFARNIVEHKFKKLH
>NC_012781.1|WP_012743297.1|2341331_2342393_-|ABC-transporter-ATP-binding-protein
MYVEMKNIYKKYGDFLASDNVSFGVEKGKLVALLGPSGSGKTTLLRMIAGLETPNSGDIYIDGKRVNDIPASKRGIGFVFQNYALFRYMTIYDNVAFGLELQKMPKKLIKERVTKLLEMTGLSGLEKRYPNQLSGGQRQRVAFARALAPNPQVLLLDEPFAAIDAKVRGELRTWLKELVEKLGITSIFVTHDQDEAVEVADEIIITNHGTIEQMGTPLEIYKSPDTPFVAQFIGHTTVVENYDRLKGFDRIENADKAVIRPEFIKISKSGNLDRYQSAAEEGIVTDVVFRGNRMDITVSINGIEVVGERSLEKDLIAVGEKVHVLIYRLYIFDEEKTYLMENSEMQEQDVFYI
>NC_012781.1|WP_012743313.1|2354649_2354940_-|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTETAEGKTRLRKVAKQCVNYGRRVQNSVFECILDNAQCVMLKAILTDLIDKDVDSLRFYYLGNRYQTKIEHVGVDRGIPADQTLIL
>NC_012781.1|WP_012743314.1|2354949_2355981_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYVTSENSYLGLDGENVVVYDDKNEIGRLPLHNLEAIISFGYRGTSPALMGACADRNISLCYLTPQGKFLARVSGKVKGNVVLRKQQFQSSSEDIKCLEIAKNCILGKVYNSRWVLERAIRDHSMQIDVDKVKKASIKLKEFLDYIQNSQSMNQLRGYEGEAASIYFGVFDELILQQKKDFFFQGRNRRPPLDNVNAMLSFTYTLLTTQITSALEVVGLDPYVGYMHTERPGRVSLSLDLIEELRAVMADRFVLSLINKKIVNGKSFTKKENGAVLMDTDIRKKLLSEWQNKKKEIITHPYLNEKVEWGMVPFVQAMLLARYLRGDLDEYPVFLWK
>NC_012781.1|WP_012743315.1|2355977_2356640_-|CRISPR-associated-protein-Cas4
MEYSQDDYLMISGIQHFKFCRRQWALIHVEQQWAENEHTVIGELMHKKAHDPYLTEKRKDILVVRDLPVSSRSMGVSGECDIVEFHKCEDGVKLYGHRGTYSLYPIEYKKGKPKESNEDELQLIAQAMCLEEMFSTKITEGAIFYGETRRRKPIVFTDELRDEVKKIFGEMHDYYDRNYTPKVKTSKRCVSCSLKDICMPKIDKSGSVKSYINKMLGETL
>NC_012781.1|WP_012743316.1|2356639_2357551_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MGEVIKNRYEFVVLFDVENGNPNGDPDAGNMPRIDPESGLGIVTDVCLKRKIRNYIETVKEDEDGYKIYIKENVPLNRSDREACKSLGINDDEDKKVTEALKKLKKSDKDADIKLRDYMCRNFYDIRAFGAVMTTFVKASLNCGQVRGPVQLGFARSIDPVISQEVTITRVAITTEKDAENKSNEMGRKSIVPYGLYRVEGYISANLARKVTGFSEEDLELLWDAVINMFENDHSAARGKMAVRELIVFKHSKELGDCPAYKLFDAVKVQKNDDIQYPRKYQDYTVTINDDEIPDTVEVKRMI
>NC_012781.1|WP_012743317.1|2357551_2359288_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALVKEYENLAENNLVPKRGWCQAKVSYAIDLNPNGKIKEIYPLKTEQTSGKKKVFLPVAKSVPEMVTRSSGVAANFLCDNVKYMLGIDQNGTNARVQECFQAAKEKHLALLKNVDEPMANAICNFFNLWDPETAYDNACVREKSDELNEGGNVIFCMGNDFAQDNDTIKKIWDNYVVHQTENTNDGICLATGEKTEIARIHRGIKGVPGAQTSGAALVSFNAPAFESYGKEQSYNAPVGKNAEFAYTTALNYLLSNRDKIFQLGDSMVVYWAENGMEEYQKTFSFVMNPHVDNEEQLQRIFDSLKKSRYVDVDNVKMDFEQSFYILCLAPNAARLSVRFFYQNTFGDILKNIKEHYKRLDIVKPLWVEKKYLSVYELLRETVNPNSKDKTPIPNMSAMVLQSILSGNRYPASLYTDTVIRIRSEQGNVTWGRASIIKAYLIKNYSWKEGENYMGLEETCNDTAYVLGRLFSVLESIQKEANQGINATIKDRYFNSACATPASVFPILFKLENSHIKKLEREKGSGSKIFYEKIIGNLMEKLVLFPRSLSLEEQGKFMLGYYHQTQKKYEKKENK
>NC_012781.1|WP_012743318.1|2359284_2359953_-|type-I-C-CRISPR-associated-protein-Cas5
MGVGVRVKVWGDYALFSRPEMKVERCSYDVMTPSAARGILEAIYWHPGLSWVIDKIYVKNPIRFTSVRRNEIKSKASANNILQVYNGADKPLYISTKDDIVQRASLILKDVSYVIEAHFEMTEKANNTDNPGKFKDIMMRRLKRGECHHMPYFGCREFPANFCLCEEKDIHTFYDNIPEKDLGFMLYDMDYSDCERGNISPMFFRAVMKRGVIDLRDCEVIR
>NC_012781.1|WP_012743319.1|2359953_2360394_-|hypothetical-protein
MAVKNNNNLFYTCSLIEYIGRQIKRKRYEVVDLLTKERIKRIYKYADILHCEPIEKVADEFITECSMNNGNYDNIHDCKYRIPDYWDIGEVYERLIEDCFSDDEILHGIWKVYHSWISDKISNYNTDFYYQPRDYIAACYEEGDVL
>NC_012781.1|WP_012743320.1|2360383_2360845_-|DUF3990-domain-containing-protein
MILYHGSKEIVEFPEIRTARYNKDFYFGFYCTQMPEQAVRWATRYGTRGYLNKYEYTENSKLKYLVFEKMTEEWLDFIVDCRRGIAHSYDIVEGPMADDTIYNYIQNYIDGKISRAAFWELAKFNHPTHQISFHTVSALSTLRYVGNEVVYGG
>NC_012781.1|WP_012743321.1|2361078_2363193_-|CRISPR-associated-helicase/endonuclease-Cas3
MEYIAHIEEERKQRLIDHLDGTAKLAGKFAESFGKYEWGYCIGMLHDLGKYSKEFQHKIQFNTNDRVDHSTAGMRLCNEKGGYYSILQYAIAGHHSGLMDYYKLEERYRKSICDYQAYRQEVEIPQIKSDPFESCKTQNPHFSMGIFMRMLYSCLVDADFLETESFMKNNHVERTSGEEMASLLARLERHIGSWLENDDLNSINGRRTEILKACLIAGENDRGLFHLTVPTGGGKTIASLAFALKHAVRHQMEHIIYVIPYTSIIEQNAQVFREILGQDNVLENHCNVDYGDSEELKPMQLASENWDKPVIVTTNVQFFESLFASRSSKCRKIHNIANSVVIFDEAQMLPLEYLKPCIAMMENLMDFYRTSIVLCTATQPALDSIFDQHRRYIELCPNINEQFKFFKRVIYENLGIIEFDTLIERLKTEKRALCIVNTKKCAQQLYEQLSGDGVYHLSTSMYPKHRKKILAQIKERMSDKSKSCVLISTSLVEAGVDLDFNSVYRQVAGVDSVIQAAGRCNREGIEKKENSKVYIFDINGMKTVPGQSLQSSITKGLLQDYHDISNLECITEYFKRLYHFRENDLDKKNIIGEFKDWKYNFETVSEKFHLIEENTRIVFIPIEQEAKDLLFEIKNQGYGKARMRKASQYCVQIYNQLFDTLYGAGIIKEITSDIENFYELVDEEMYTDDKGLNLSVESGMDLYL
>NC_012781.1|WP_015568209.1|2363213_2364203_-|aldo/keto-reductase
MYTADEKRYDTMRYNRCGRSGLKLPVVSLGLWHNFGDFSSYDNMKQMCFTAFDHGITHFDLANNYGPEYGSAEKHFGLILKEHLSAYRDELIISSKAGYDMWKGPYGNWGSRKYLIASLDQSLKRMGLDYVDIFYHHRMDPETPLEETMGALDQIVKSGKALYVGLSNYDGETMKRACEILTDLKCPFIINQNSYNIFNRTIEQNGLKQAARECQKGIISFSPLAQGMLTDRYINGIPEDSRIKTDGRFLNQEKLTPHIEQIKKLNDIAAKRGETLAQMALKWVVKDDDVTSVLVGASKPQQILENLKVMEGTGFSEEELRMIDEIVGV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_012781_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012781_4

2394725-2394790

Orphan

Consensus_repeat	Method
CTGTGCGCTGCCCTGTGGCTGTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012781_4

>merge|NC_012781|4|2394725-2394790|CRISPRCasFinder
CTGTGCGCTGCCCTGTGGCTGTCCATTGAACTGTCCCTGTGGCTGTCCGTTGAACTGTCCCTGTGC

>NC_012781|4|4|2394725-2394790|CRISPRCasFinder
CTGTGCGCTGCCCTGTGGCTGTCC	ATTGAACTGTCCCTGTGG
CTGTCCGTTGAACTGTCCCTGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012781.1\|WP_012743352.1\|2401550_2402342_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|223428
NC_012781.1\|WP_012743342.1\|2387448_2388957_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|131964
NC_012781.1\|WP_012743337.1\|2381251_2381503_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380160
NC_012781.1\|WP_012743353.1\|2402444_2403095_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NC_012781.1\|WP_012743349.1\|2397887_2399531_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NC_012781.1\|WP_012743351.1\|2400147_2401458_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|376689
NC_012781.1\|WP_012743347.1\|2395095_2395824_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NC_012781.1\|WP_012743033.1\|2404683_2406078_-\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NC_012781.1\|WP_012743340.1\|2385355_2386267_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236626
NC_012781.1\|WP_012743356.1\|2406730_2407492_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NC_012781.1\|WP_012743350.1\|2399540_2400074_-\|energy-coupling-factor-transporter-S-component-ThiW	unknown	unknown	gnl\|CDD\|370540
NC_012781.1\|WP_012743335.1\|2378366_2379932_-\|accessory-Sec-system-protein-Asp1	unknown	unknown	gnl\|CDD\|274740
NC_012781.1\|WP_012743345.1\|2392546_2393797_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198111
NC_012781.1\|WP_049757238.1\|2379948_2381157_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237095
NC_012781.1\|WP_012743348.1\|2395891_2397745_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340412
NC_012781.1\|WP_012743341.1\|2386367_2387405_-\|sugar-transferase	unknown	unknown	gnl\|CDD\|236626
NC_012781.1\|WP_012743334.1\|2376874_2378374_-\|accessory-Sec-system-protein-Asp2	unknown	unknown	gnl\|CDD\|379903
NC_012781.1\|WP_041254169.1\|2403178_2404030_-\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
NC_012781.1\|WP_012743344.1\|2390276_2392448_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133037
NC_012781.1\|WP_012743343.1\|2388959_2390249_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274351

Protein	Function_ID	Function_description	E-value
NC_012781.1\|WP_012743352.1\|2401550_2402342_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|223428	COG0351, ThiD, Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism].	6.3816e-122
NC_012781.1\|WP_012743342.1\|2387448_2388957_-\|glycosyltransferase	gnl\|CDD\|131964	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. [Protein fate, Protein modification and repair].	7.01007e-93
NC_012781.1\|WP_012743337.1\|2381251_2381503_-\|hypothetical-protein	gnl\|CDD\|380160	NF033073, LPXTG_double, doubled motif LPXTG anchor domain-containing protein. This unusual LPXTG-type C-terminal protein sorting domain occurs largely in the genus Clostridium and typically is separated from the main body of the protein by a glycine-rich linker sequence. In this domain, the classical sortase cleavage motif, LPXTG, has the consensus sequence VPLAxLPKTG. Much of this motif, the sequence VPLAxLP, is repeated an average 20 amino acids upstream within this domain. This unusual structure of a sortase recognition site-containing domain suggest a specialized form of interaction with its cognate sortase.	0.00805445
NC_012781.1\|WP_012743353.1\|2402444_2403095_-\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	9.21024e-80
NC_012781.1\|WP_012743349.1\|2397887_2399531_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.39241e-64
NC_012781.1\|WP_012743351.1\|2400147_2401458_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|376689	pfam01964, ThiC_Rad_SAM, Radical SAM ThiC family. ThiC is found within the thiamine biosynthesis operon. ThiC is involved in pyrimidine biosynthesis. ThiC participates in the formation of 4-Amino-5-hydroxymethyl-2-methylpyrimidine from AIR, an intermediate in the de novo pyrimidine biosynthesis. Thic is a member of the radical SAM superfamily.	0
NC_012781.1\|WP_012743347.1\|2395095_2395824_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.09264e-27
NC_012781.1\|WP_012743033.1\|2404683_2406078_-\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.45797e-163
NC_012781.1\|WP_012743340.1\|2385355_2386267_-\|hypothetical-protein	gnl\|CDD\|236626	PRK09814, PRK09814, sugar transferase.	8.76119e-51
NC_012781.1\|WP_012743356.1\|2406730_2407492_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	2.15308e-106
NC_012781.1\|WP_012743350.1\|2399540_2400074_-\|energy-coupling-factor-transporter-S-component-ThiW	gnl\|CDD\|370540	pfam09512, ThiW, Thiamine-precursor transporter protein (ThiW). Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.	2.54735e-48
NC_012781.1\|WP_012743335.1\|2378366_2379932_-\|accessory-Sec-system-protein-Asp1	gnl\|CDD\|274740	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	4.15018e-106
NC_012781.1\|WP_012743345.1\|2392546_2393797_-\|hypothetical-protein	gnl\|CDD\|198111	smart01043, BTAD, Bacterial transcriptional activator domain. Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.	7.94278e-10
NC_012781.1\|WP_049757238.1\|2379948_2381157_-\|hypothetical-protein	gnl\|CDD\|237095	PRK12417, secY, preprotein translocase subunit SecY; Reviewed.	1.52515e-58
NC_012781.1\|WP_012743348.1\|2395891_2397745_+\|sensor-histidine-kinase	gnl\|CDD\|340412	cd16935, HATPase_AgrC-ComD-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing. This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.	2.03206e-37
NC_012781.1\|WP_012743341.1\|2386367_2387405_-\|sugar-transferase	gnl\|CDD\|236626	PRK09814, PRK09814, sugar transferase.	4.38305e-138
NC_012781.1\|WP_012743334.1\|2376874_2378374_-\|accessory-Sec-system-protein-Asp2	gnl\|CDD\|379903	pfam16929, Asp2, Accessory Sec system GspB-transporter. Asp2 is a family of the SecA2/Y2 accessory Sec secretory system of Gram-positive bacteria. It is specific for large serine-rich repeat, cell-wall-anchored, glycoproteins such as GspB. Export of GspB requires the three Asp1-Asp3 proteins. Asp2, in conjunction with Asp3, probably acts as a chaperone in the early stage of GspB transport.	0
NC_012781.1\|WP_041254169.1\|2403178_2404030_-\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	3.58167e-86
NC_012781.1\|WP_012743344.1\|2390276_2392448_-\|glycosyltransferase	gnl\|CDD\|133037	cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune system of host cells. In E. coli, the three alpha-1,2-glycosyltransferases, that are involved in the synthesis of the outer core region of the LPS, are all members of this family. The three enzymes share 40 % of sequence identity, but have different sugar donor or acceptor specificities, representing the structural diversity of LPS.	2.46538e-55
NC_012781.1\|WP_012743343.1\|2388959_2390249_-\|hypothetical-protein	gnl\|CDD\|274351	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. [Protein fate, Protein modification and repair].	4.48178e-63

>NC_012781.1|WP_012743345.1|2392546_2393797_-|hypothetical-protein
MTHKIKVQMFGNFRMDYNGAPFVAEKMHKESQFNRMMQALIHYSDCGIAKDKLEEIVIGERDIDAPHTALRVIVYKTKQKLAQLGLPGKNLIYLEGGIYYWTPDIEIEEDAAEFEKLYNEACALEKQMPQEPESAETVCDERIKEIEDNMLELYVKALYLYKGEFLAAYTGETWIAQEARRYHTMFEKIINEAAYILRKRKQFKGLEKLGVYAAKVDPFNEWEELIMEAMVETRRYEEAEELYTDVVDYYLRECGIYPSSRLLEILEKYNNQMNHAHEILENIQEGMNEQEETERGGYFCSYPVFKGIYQASIRIMKRTRVPVYLMLCTLEDEEGRQVQGETKMNKYSRQLKKCVGESIRYSDIYTSYGKVQFLIMLIGIKREDCEIVKKRINRQFAKKNPRAAEKCHVNSIVCEL
>NC_012781.1|WP_012743344.1|2390276_2392448_-|glycosyltransferase
MNGKDKISVIIPCYNVQKYIMRCFDSIYSQTYGFENLEVILIDDLSTDNTWSILESLQRQYPENVISLKIQKKGKCGGARNLGMDICTGKYITFVDADDYVHPDMLRVLHDRMTEDDYDVAQCGVSCFKADKPNVLEVNDFEIQRLDLDNVDNRKNLIIGLTGFTNVTAWAKLYSTKFIIEHNLRFIEDVYYEDTYFSMLCVLLAKKYCKVQSTLYYYFENTEGIIRSEISNAKIRDAKIIMDHIRQAIQSRKAELRNVIEQCHCEIQSFLLWHQYLESYNRIENFLKKELDICKEEFLKSEPDIFNNPYVRAFSDDAVLKRMSKLRVTAKKMDNVWFLDNAIHICLGIHDKDGNYSVWAGTTMQSIVENTKAPIVFHILHDDTLNEMNKNKLSLIADNSGNGIEFHHFNPDIFGSLADSMNRFTIGTMFRIMLPDIMPDLKKIIYLDSDLFVNTDIEELWNLNIDNYCLAAAQDCSTIRNWGTPYAVAAGQTSRDRYFNAGVLCMNLDNIRKNGSLFQQVMDYLSDNPRTWLPDQDALNAIFSGKTLLIDEKWNYFIDEARKNNEKAEKKIYHYAATLLMLHTNNEIDRAYYFTILRTPWGEQMEDGLLCNSMGRIVDRTGMLEKLLKKATQNNIRFVFYGGENSSIRKAMRLLNRNFDSCEWHEHLEENEIICDDNTVYIVSADADDSNGLEILANAGLENGKNYFITQRFLHYTEGGFAL
>NC_012781.1|WP_012743343.1|2388959_2390249_-|hypothetical-protein
MIILAKEYTDFIKRIKNTINNTGKSCSVCTLLAMTNHNINDVFGFYDCYIDENRKGEQTKELYYAFIELPKWWAVRADGVDGAVYDNNIKKASIYFNEPIEKRNVKLVEWHDEENRVYRKDYYNKMGYKYCTENVRNNKIILREFFDSEGNLVLLEQVMSQIYTVFEKNDIKKVCTSFAELFTDIMIKAEISDKNIVVFDVEELEKIYGLREKYSVTFFLNDDKQYEKFQKGEFVDKLRILCNDKNKRDWIAKHTNCVCKSFYLYDKRKKNKFGIKKALIFTDSDQLEMIDTLITEIPDLDFYVAAWTLMSDKLLQLEKYENVYLYPVVSEEKIKELFDLCDIYLDINYYNEVYSSTNVAVNNSMVIFAFENTVHRRDICLKNNIFEITDCDRMIGRIKETMYEESIYRELIEEQYKKLYTAVTEMFEE
>NC_012781.1|WP_012743342.1|2387448_2388957_-|glycosyltransferase
MRIFDFTLMNGYEFSGVDVAQGFRAKLFKKNNIDIKYCFMNLPTQRDLDLYINQGIDREQIISKEIYLTGRMDMRLSLKKDILLSKEIIDHDDIIEKDNITYLIENNKKKCEIICDDENNIISASYYKDERIIFTSFYFDSLAYTELYGTSDCEIGESQLERRLFWDTNGKLVFEQVFDADKIKYVFSNGQVMDNQELLIYFIKQLALNENDICILDRGGYLDYLRPLFEFGNRAKFICVLHSDQYYELNENIGSLYMNYEYYYWFKYSQAIDTFIVATEEQRKALINKLKEHDCYIPSVSVIPPGAIETQKCIIENRKKYSIISASRIEETKGIDLLIAAVIEAHKYNQYINLDIYGEGSDEYILHLNNIVSSNNASDYIHFMGRQNVKLLYRNYEVYASFSQFESFGLSLMEATGNGLAMIGLDTRYGNRLFIKNEQNGYLIDGKLMNKKVLAKKIGMAIVKIFENEDRLKLFHENSYKIASGFTEASVEKKWMRLLRYK
>NC_012781.1|WP_012743341.1|2386367_2387405_-|sugar-transferase
MKTHITTLNNMAGTASLAHRRVLKVAQSIGCHEMGLSFYPLKPDYAKEIDKRLDGIIAPLNYGDIVIFQYPSWIGVNYDESFVNKIKSYRDTKLIIFVQDIQKLMFDSEQAILDMEIKTLNKADLLILPSKKMHRYLKENGLDEKPVIYQTIWDMPSDICFVDHAVTRCFHFAGNYNRFPFLAEYHGKTPIYQYDANKPDRENDDSFCWKGYFEQEKLMHELSKGGFGLVWSDDEYFDRYYSMNQPYKLGTNLAAGIPVIVKRGCVHDKFVERNGLGYAVDTLDEADKLVQSITDAEYIELYRNVKNIQKLILDGAYTRKILQDAIIEVLENACTPVENRYQDHI
>NC_012781.1|WP_012743340.1|2385355_2386267_-|hypothetical-protein
MSVHITKTYNIGGLIGLRQNAVKNAGETLGFKEMSLFKFPDTYDSDDELHVRMDGIIASLCPEDIVIFQHPSGESPRYDGFLFEHLRRYHGTKIVAFIQEIASDRDDSEYSLSDEITLLNRADMFIFASAALRDYYIANGLKEKPYLIQNIPDYMTDICANEHKNKKLYIMAETSQNEYPLNNLNIEVVQYDEYHVTESILRLSDGGFGLIWDTDEQALGLYMAAGIPVIVKKGLSCEKYVTDNEIGAAATDFEDVYRIAVSESEDKLSQYYANVKKLQDLFINGIYTRKLLLDTLILCRERL
>NC_012781.1|WP_012743337.1|2381251_2381503_-|hypothetical-protein
MAPNTPIQDAQVPLAVNEDEDNLQNIEDEDTPLAAVGTAKDGIKTWWWWIAAAVAAITGKGVYDNRRRKPAKSDDSEDNSDEK
>NC_012781.1|WP_049757238.1|2379948_2381157_-|hypothetical-protein
MKEKRQKEHVLLYKILYSLMIMLVYMIGRNIPLYGIDLKAYEDVSVDAQSILLQALSGDMKNCSLFILGLWPYMIASILAVLLVAIISLDSSRKISPRKLNIWTLFFMMVIAFIQAYQKVQTFVYKDMDAQMLLITKIIVFIQLIAGMLIVVYMCDRTTKYGIGGRMSVFMINIVDGMMNMFAGQKADRLILPVIIGVVEIAIMVIIETTEKRIAVQRVSINNIYADKNYLAYKLNPVGAMPLMFTSAVFMLPQFVCSGLYYLHPDNQKLAWLVDNLRLTAVFGIIVYLAIIVLLTILFSVIMLTPGKEAENLLKSGDSILDIYAGKPTRRYLVGTVIRFSIYSSIIICICQGVPLFLQFGGYIDSTLAMLPCSIMMSTGIWISLYREAEVYRNMDRYHPFI
>NC_012781.1|WP_012743335.1|2378366_2379932_-|accessory-Sec-system-protein-Asp1
MLYFVPAWYKENSWIENEQQWYMRRMKSEFDETIKQITLFHRNVDVKYRIVLLGYSPNFRHFSHRQGMYRSPYWSCFDAIAQIKRTKMAVLSYHDIKWPEGVEFVYSPFSIVALYNGQKYAQVEFGEDGNPIIIDMYEEGQICRRNYYDDRGFVSSTIIYENGQMKYQDYLMENTIWKLRVNASDGSVMVNPSYPMYDTKTGEKQFCKLSYDSLDEVIQEVLSDFVNETGAKDTFFVAVHSLHMKVLGDVLRERKVVYTFFEERYDYSKIHSIKGYLKSSEYIITDSKNTTKIIKDNLSDSSLRIMDIPPYDTRMDFGISQQLKVQNILIPIDGLEKDAYRAIIREVSEYLCINDLARVHIFTRNAQWGHEDNIRNELVGMLREYGHDIRWACKADSIDEDEEKVEQRFFIDVCVDERTISKCINEQRIILDLRGVVDVFLYITAISKGVPRISFSEDQFLHDGKNGRIIDDYNQIGRSLAFYLDSLENWNAALVACYEAGKDYKTEVLLDKWRKVLGIVE
>NC_012781.1|WP_012743334.1|2376874_2378374_-|accessory-Sec-system-protein-Asp2
MNSIQILYIGNEDWTTKYNIPDFVEWENYEDTGIFPPKQVDIVILDRDITNKEKQILAKITRAYSLFATENIKMQNSVTHDYFEERSGLYLYSGDVQVFLDQEAAKYYRQPYGEKFKPEHISVSQFFRGSVRCKGNYDMLLEGNFGDTFSQIVFWKSNIPVFDRQNIDLYFEHRRTGSVEVKLHVYKFYNGSVGDIQRVWEFSQDELDGIVTIDNDELEGPLFVSVLAKGQGTLEVISLHDRYSRQNIGYFLPGGERIISSQGEEIFTYLDKGDCKPPLAIYFSGYRKQEGFEGYNMMRKLGCPFMLITDPRLEGGAFYIDNADLEEKLFNNIEKTINEMRFKKSDVIISGMSMGTFGSLYFGSKLSPHALILAKPLTELGVVAENERLLRPGVFPTSLDLLLKNYGSLSKKSVEEFDKRMWERFDKADWSHTKFIASYLYEDDYDTDGYKNILEHLKSEGVEVYGKGSHGHHNDNHESVVGWFLSQYRLILEEDFNRK
>NC_012781.1|WP_012743347.1|2395095_2395824_+|response-regulator-transcription-factor
MPQTLNIAVCEDEAAETLLLCDILNHSDIQNTYTVFTDADSFLASYEYGKYDLLLMDIYMKDSMTGIEAVSIIRETDADIPVAFITTSTEHALESYRLSAIGYIEKPVSAAELSNILHLAMLKKSDAPSLYVKRNKSMERLALSDIMYIEQRARQIFIHLKENEEISCYEKLSELSDQLPAELFFLPHKSYAVNLSYVTRIDTSLKCFVMADDTNIPIKRELSGKAKKALERYYFEHTRGLK
>NC_012781.1|WP_012743348.1|2395891_2397745_+|sensor-histidine-kinase
MKKISAIRNIPYLTIILLTLICILLLSSKNMIMSQASYPEATIVSSAYAVVEGSDSDKEEITFPHTFKHLSPRTHVTVTTHINLNKDDPIYIKTVYSPAKVYLDDELIYEFGLAENYPSYMKDPATEGYLIGTDGHSGDTELRIEYLSPVTRSSLTVYSPIYGAYKSLFFTLLKLNKWSFFIALLELAAGVLFIFISLMLLYYDKEVCKMIFHFGFFSLMAGMWSIGECNYTGVIIKNPTLLYLCAFIGLFSQMIPLLYFCRLAVGFKNDKPIIVIAKLLTVLDLVACVLQLSGTVALSQSMYVFHVILPLILCFLTAYIILEAVRSQNSRAKRLMVPVFILALASCAEIINYHLKFVASLSLLYQIGTLLFIIIMGIVMGLNISDMLSIKRENERLIFDMNLLEHSLLEQKKYNSLITTNEQLFKKQRHDLRHQLVAIKGLANTENKQLNEYLDSLIHSIPSAPASYCENRVVNSILSYYSAICRNENIALETKLIVPETDDAALDNDLCLVFGNLIENAIEACRRMDTLDSSDETPSRFIRLHAHVHYKTLIITMDNSFDGHVTIQNGKYRSSKRDDYGIGLSSIRSVAGKYDGDVAFEAADGIFQSSVYLQIYK
>NC_012781.1|WP_012743349.1|2397887_2399531_+|EAL-domain-containing-protein
MIENTIYKEFIDKISELSDGIYPIITDLDNDLSYVPDKTADFFGFEAGEHTCFFEQLSSCVNDVDLPEYKREIRYRLNGEKPDDIFYVRMGKHTKEYMMGFYSDIFTGDDGHRYHVLVLRNENTLPDIDPYTYLYGQSKFERDINGYIMENRSVAIIEVEIGHIDEFNILYGSNFNTAIQRELALKFIYMMDGSTATYYMNNCKFVFVVKEADRALAESFYQKIADTIKSMYFFKCFKFEFDIYAACLILKDYDGDTSTVISKVEYTLDRAKELHSSDLLFFNDMVRFNGSSHIDIMKIIHQSVINSCDGFFVEFQPIVKACNGEIMGAEALVRWKKEPFGTVPPGLFIDWLEDTPAMYELGNYIMRTAISAASEFAKIKPGFFINVNASSEQLEKENFVKDTLAILKEYDFPPSQLWIEITERCRDLPISMIKKTVTAFREAGIHITMDDYGTGSSSSQMMLELPVEGIKIDMFFVKDILEEKKKQALVIGMINFANAADLKICIEGIENDNLESYLRQFDVTWFQGYHYSRSICQDELMKLLIKP
>NC_012781.1|WP_012743350.1|2399540_2400074_-|energy-coupling-factor-transporter-S-component-ThiW
MESKKNTKKRTLSIRKIAMAGVLVAVAVAGSLISFPVAGSKCAPVQHMVNICAAVFLGPAWGVGVAFCASIIRNLTGLGSLMAFPGSMVGALCCGLMYRFSKKIIPTCIAEALGTGILGGLAAYPLAKYVMLIQPEGMFIYIVPFLISTVAGSIVAAIVMLILKKNGALTVFKENLE
>NC_012781.1|WP_012743351.1|2400147_2401458_-|phosphomethylpyrimidine-synthase-ThiC
MSNYTTQMDAARKGIVTPEIEKVAKKEKMDVDKLMELVASGKVAIPANKHHKSLDAEGVGSMLRTKINVNLGVSRDCKDYDVEMQKVMSAVKLGAEAIMDLSSHGNTQPFRQKLTSECPAMIGTVPVYDSVIHYQRDLATLTAQDFVDVVRLHAEDGVDFVTLHCGITRKTIDQIKKHKRKMNIVSRGGSLVFAWMCMTGEENPFYEHYDEILEICEEHDVTISLGDACRPGCLADATDVCQIEELVRLGELTKRAWDHNVQVMVEGPGHVPLDQVAANMKVQQSICMGAPFYVLGPLVTDIAPGYDHITAAIGGAVAAMNGAAFLCYVTPAEHLALPNVEDTKQGIIASKIAAHAADIAKGIPGARDIDDKMADARRVLDWDAQFACALDPETAKAIRDDRLPEDDHSEACSMCGKFCAVRSMNKALAGEYIDIL
>NC_012781.1|WP_012743352.1|2401550_2402342_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MHTALTIAGSDSSGGAGVQADLKTMLANGVFGESVITALTAQNTMGVDAVMNVPADFIEAQMKAVFSDIFPDAVKIGMTSSVDTIEAIAAGLVKYKAKNIVLDPVMVATSGSRLLEENAANTLMEKLFPLADIITPNIPELEVISGRQIESTDDIIEASKAVYDKYGCPVLSKGGHFTDTACVCDYLWDGKQIITFETKRVDNPNSHGTGCTLSSAIASGLAKGQSLEQAVDNGKRYVTACLKAMLDLGHGSGPMNHGALFIQ
>NC_012781.1|WP_012743353.1|2402444_2403095_-|thiamine-phosphate-synthase
MNETDLKLYAITDRQWLHGARLSEHVKLAIEGGATMIQIRDKDILSTDSDAGLKDEYSEALEIKRICHEHKVPLIINDNVQFAIDIAADGVHLGQDDMNPAEARKLLGTDKIIGVTAKTVEQAKRAEADGADYLGSGAVFGSTTKLNAKPMTKELLREITAAVDIPVVAIGGINADNAVTLKGTGIAGIAVVGAIFASADIKAAAKELAGICDKIL
>NC_012781.1|WP_041254169.1|2403178_2404030_-|hydroxyethylthiazole-kinase
MNNFIEKLKSRSPLIHNITNMVTINDVANIELACGARPIMAMAPQEMDEVTGICDGLNLNIGTPSEERFEAMRIAARMAAKKNIPIVLDLVGVGVSRFRMDFVMSLLDEVRVDVIKGNLSEVKAVMEHGRCDGGVEVTDTADESDAKALACRAALRYGSICVITGETDYVAELCDEADCYDNNERSVMCITGGHPMMKRVTGTGCMLSGLICAFVAADCDDKYGAVTAALSCMKSAGGLAASDMAEHGRETNSCYFIKPGNAAYRDRLIDAVYHICDGDYELM
>NC_012781.1|WP_012743033.1|2404683_2406078_-|group-II-intron-reverse-transcriptase/maturase
MAENIENNGCSQRDNAEHEGYVKASRSFNRIWKERDSAQPRLLETILYKDNFNRAYKRVKANKGAPGIDGMTIEEALPYLKEHQQEITDRIYRGKYTPSPVRRVEIPKPDGGVRKLGIPTVIDRTLQQAITQQLVPIYEPLFADGSYGYRPNRSAKDAILKVKEYAEQGYTFAVVLDLSKYFDTLNHEILINLLRKNVKDERVVQLIKRYLKSGVMENGVVIDTEEGSPQGGNLSPLLANIYLNEFDQEYLKRGVPCIRYADDIVLLAKSKRASERLLESSTKYLEERLKLTVNREKSRTVSVFAIRNFKFLGFALGRNGKGIYVRVHPKSWKKFKSRLKELSSRKRCQSIKPSLEKIKVYARGWLNYYGIASMKSNIDDINGWLYHRIRMCIWKQWKKPRTKYKNLVKLGIPEHYASTIANSRRKYWYISNNKAVIWALNKERLINSGFYDLATAYQSVHVNY
>NC_012781.1|WP_012743356.1|2406730_2407492_-|4-hydroxy-tetrahydrodipicolinate-reductase
MTKVIMNGCNGKMGQTITEICKADADIEIVAGIDLYDGIDNDYPVFSSIDKCDVDADVVIDFSNAKAVDGVLDYCVDKQVPVVLCTTGLSDEQLAKVEECYKKVAVLKSANMSLGINTLMALLKKAAQVFAPAGFDMEIVEKHHNLKLDAPSGTALALADSINEAMDNEYHYVYDRSQRREKRDPKEIGISAVRGGSIVGEHEVLFCGQDEVIEFKHTAYSKAVFAKGAVEAAKFLKGKGAGHYDMADVIAAK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_012781_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012781_5

2867220-2867282

Orphan

Consensus_repeat	Method
CATTTTTACTGTTGTTTACTGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012781_5

>merge|NC_012781|5|2867220-2867282|CRISPRCasFinder
CATTTTTACTGTTGTTTACTGTTTTGAATTTGTTTTACTGTCTTTTACTGTTGTTTACTGTTT

>NC_012781|5|5|2867220-2867282|CRISPRCasFinder
CATTTTTACTGTTGTTTACTGTTT	TGAATTTGTTTTACT
GTCTTTTACTGTTGTTTACTGTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_012781.1\|WP_041254237.1\|2873957_2875532_-\|MBOAT-family-protein	unknown	unknown	gnl\|CDD\|224610
NC_012781.1\|WP_012743734.1\|2862083_2862650_-\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NC_012781.1\|WP_012743747.1\|2871319_2872573_-\|aminopeptidase-P-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182804
NC_012781.1\|WP_012743729.1\|2856678_2857887_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
NC_012781.1\|WP_012743742.1\|2867515_2868442_-\|SufD-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|376550
NC_012781.1\|WP_041254235.1\|2870804_2871113_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
NC_012781.1\|WP_041254233.1\|2862646_2864113_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|223225
NC_012781.1\|WP_012743738.1\|2864704_2865178_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_012781.1\|WP_012743744.1\|2869379_2869937_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_012781.1\|WP_012743733.1\|2860946_2861963_-\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NC_012781.1\|WP_012743731.1\|2858842_2860033_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NC_012781.1\|WP_012743745.1\|2870185_2870650_+\|hypothetical-protein	unknown	unknown	unknown
NC_012781.1\|WP_012743748.1\|2872805_2873198_-\|30S-ribosomal-protein-S9	unknown	unknown	gnl\|CDD\|178888
NC_012781.1\|WP_012743739.1\|2865226_2866138_-\|hypothetical-protein	unknown	unknown	unknown
NC_012781.1\|WP_012743730.1\|2858082_2858850_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
NC_012781.1\|WP_012743732.1\|2860131_2860920_-\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NC_012781.1\|WP_041254674.1\|2868443_2869178_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223473
NC_012781.1\|WP_012743740.1\|2866177_2867209_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379062
NC_012781.1\|WP_041254675.1\|2875625_2876861_-\|hypothetical-protein	unknown	unknown	unknown
NC_012781.1\|WP_012743749.1\|2873214_2873643_-\|50S-ribosomal-protein-L13	unknown	unknown	gnl\|CDD\|181703

Protein	Function_ID	Function_description	E-value
NC_012781.1\|WP_041254237.1\|2873957_2875532_-\|MBOAT-family-protein	gnl\|CDD\|224610	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane].	9.4298e-47
NC_012781.1\|WP_012743734.1\|2862083_2862650_-\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	3.16659e-112
NC_012781.1\|WP_012743747.1\|2871319_2872573_-\|aminopeptidase-P-N-terminal-domain-containing-protein	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	3.44722e-86
NC_012781.1\|WP_012743729.1\|2856678_2857887_-\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	1.56395e-38
NC_012781.1\|WP_012743742.1\|2867515_2868442_-\|SufD-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|376550	pfam01458, UPF0051, Uncharacterized protein family (UPF0051).	2.87074e-50
NC_012781.1\|WP_012743748.1\|2872805_2873198_-\|30S-ribosomal-protein-S9	gnl\|CDD\|178888	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed.	1.71564e-86
NC_012781.1\|WP_041254233.1\|2862646_2864113_-\|anthranilate-synthase-component-I	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	1.36141e-178
NC_012781.1\|WP_012743740.1\|2866177_2867209_-\|ATP-binding-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	1.80097e-05
NC_012781.1\|WP_012743744.1\|2869379_2869937_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.84255e-11
NC_012781.1\|WP_012743733.1\|2860946_2861963_-\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	0
NC_012781.1\|WP_012743731.1\|2858842_2860033_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NC_012781.1\|WP_012743749.1\|2873214_2873643_-\|50S-ribosomal-protein-L13	gnl\|CDD\|181703	PRK09216, rplM, 50S ribosomal protein L13; Reviewed.	7.54024e-102
NC_012781.1\|WP_041254235.1\|2870804_2871113_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	9.70008e-35
NC_012781.1\|WP_012743730.1\|2858082_2858850_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	4.18214e-120
NC_012781.1\|WP_012743732.1\|2860131_2860920_-\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	3.61572e-120
NC_012781.1\|WP_041254674.1\|2868443_2869178_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	6.79057e-52
NC_012781.1\|WP_012743738.1\|2864704_2865178_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.90453e-15

>NC_012781.1|WP_012743740.1|2866177_2867209_-|ATP-binding-protein
MQNPFTLTFGRSPLESVDRPVQINEIIENFTADTINQQMFIITGVRGSGKTVMMTEISHRLRENDDWVVIELNPATELLPAMLSKLNSDNICAGLIKSAKLDLSFFGFGVSIEGTQPITDAETAIIKILERLKKSGKRLLITIDEMTNSEYMKVFAGAFQIFVRQELPVFLLGTGLYENIEELQNEKSLTFLYRAPKIQLKPLNNAAIINKYKTIFNISPEKAAQMAGLTKGYPFAFQVLGYLTWNNGGDYNGILGEYEQYLSEFVYDKIWSELSQKDRMVAKGIADVQSGKIKEIRDAIGMETNEFNPYRKRLIKKGIVSGEIRGYVYFTLPLFEEYVIENY
>NC_012781.1|WP_012743739.1|2865226_2866138_-|hypothetical-protein
MKAYYHLPGLFEFYELYKEFLPLYRKHREYFYDWCDIGSIYGAPADCIWGGGRVGFGEHDLKEVLKLMQEYGISARLTFSNSLLTKEHLPDKKCNELCRIFDIGRDNERSRGFGNGIIIYSDILLDYIKENYPDFYFVSSTTKVLTDFSEFKNELNREEFRYVVPDFRLNKSFDNLKALSQHQKEKVEFLCNECCWFGCTDRKKCYETVSRKNLGVDCPEHYCVAPDSGQGYLFSKAMENPGFIGVYDIKNTYLPMGFSNFKIEGRGLGSAMILEFLLYYMTKPQYQIHVREHIYLDNMLDLF
>NC_012781.1|WP_012743738.1|2864704_2865178_-|GNAT-family-N-acetyltransferase
MNIRRAHEKDIPRLIELLEQVLQIHADIRPDIFIPGTTKYTNEELAEMIKDDTKPIYVAADDDDICMGYAFCQIRQQPFSNNMVPFTSLFIDDLCVDAKTRGQHIGEQLFEYVKNEAKHLGCYEVTLNVWSGNTSAEKFYEKMGLKTKERQMEYILM
>NC_012781.1|WP_041254233.1|2862646_2864113_-|anthranilate-synthase-component-I
MKISPTLTEVKEIAKTGKYDILPVSCEILSDFITPIEAMRILQNVSTHCYLLESAQANEAWGRYTFLGYDPKLEINCIDGHMKLGKLSVETENPSEYIRQILSEYKSPKFDYLPSFTGGLVGYFSYDYLGYKEKSIRGKARDTEDFKDVDLMLFDKVIAFDNLCQKIILIANMSLDAPETGYNKAIVELKQLRELLMHGEKKQNMGGKLLGEVTPLFDKEQYCEMVEKAKHHIKEGDIFQIVLSNRLSAPFEGSLFDTYRVLRTINPSPYMFYFSGTDVEVAGASPETLVKLENGVLHTFPLAGTRPRGATAEEDKKLEEGLLKDEKELAEHNMLVDLGRNDLGKVSKFGTVKVEKLHSIERYSHVMHIGSTVRGEIREEYDALDAIEAVLPAGTLSGAPKIRACQLIGELEDNKRGIYGGAIGYIDFTGNMDTCIAIRIAYKKNGKVFVRSGAGIVADSDPEKEFQECINKAKASLKALEVSQEVEE
>NC_012781.1|WP_012743734.1|2862083_2862650_-|aminodeoxychorismate/anthranilate-synthase-component-II
MILLIDNYDSFSYNLYQLIGEIEPDIRVIRNDEMTVEEIRALKPDRIILSPGPGRPEDAGVIIAVAKELGKEIPILGVCLGHQAICAAYGATVTYAKELMHGKQSDVSFDTESLLFKGCPKKAKVARYHSLAADADTMPDCLKITATTDDGEIMAVEHKEYPIYGVQFHPESIMTPDGKQMLSNFIKA
>NC_012781.1|WP_012743733.1|2860946_2861963_-|anthranilate-phosphoribosyltransferase
MIKEAIVKIVNKEDLTYDEAYAVMNEIMGGETTSTQNAAFLAALSTKSAKAETTDEIAGCAAAMREHAVQVKTGMDVFEIVGTGGDNAQSFNISTTSALVAAAGGMKVAKHGNRAASSLCGTADCLEALGVNIDQSPEKCVELLNKVGMCFFFAQKYHTSMKYVGPIRKELGFRTVFNILGPLTNPGSPAMQLLGVYDEYLVEPLAQVLVSLGVKRGMVVYGMDKLDEISMSASTKICEIKDGWFRTTVISPEDFGFERCTKEDLKGGTPEENAKIVRDILGGQKGHKRNAVLMNAGASLYIGGKADSMKEGIELAAEIIDSGKALETLDKLIDVSNS
>NC_012781.1|WP_012743732.1|2860131_2860920_-|indole-3-glycerol-phosphate-synthase-TrpC
MNILDQLAEYSRLRVAEDKKKISLEEMKNIAIQMKNEKLCDFAFEKTLKKDGLSFICECKKASPSKGLIEPDFRYLEIAREYEAAGADCISVLTEPKWFLGSDEYLKEIAKTVSIPCIRKDFTVNEYQIYQAKTLGAAAVLLICSILSEEQLGEYIKICDSLGISALVEIHDEKEAGMAVRAGARIIGVNNRNLKDFTVDTANSRKLRDLIPDDIIFVSESGVKSTDDIRAIREIGADAVLIGETLMRADDKKAKLDELRLS
>NC_012781.1|WP_012743731.1|2858842_2860033_-|tryptophan-synthase-subunit-beta
MTNPNGRFGIHGGQYIPETLMNAVKELEEAYNYYKNDPEFNRELTELLNDYAGRPSRLYYAEKMTKDLGGAKIYLKREDLNHTGAHKINNVLGQALLAKKMGKTRLIAETGAGQHGVATATAAALMGMECVVFMGEEDTKRQALNVYRMRLLGAEVIPVTSGTATLKDAVSEAMREWTKRISDTHYCLGSVMGPHPFPTIVRDFQAVISKEIKEQMLEKEHRLPDAVIACVGGGSNAIGSFYNFIEDEGVELIGCEAAGRGIDTFETAATVNTGRLGIFHGMKSYFCQDKYGQIAPVYSISAGLDYPGVGPEHAYLHDIGRAKYVPVTDDEAVNAFEYLAKTEGIIPAIESSHAVAYAMKLAPTMDKDKIIVVTVSGRGDKDCAAIARYRGENIYE
>NC_012781.1|WP_012743730.1|2858082_2858850_-|tryptophan-synthase-subunit-alpha
MNKIRSAFENGKAFIPFITCGDPNLETTEKIVREAVANGADLIELGIPFSDPTAEGPVIQGANIKALAAGVTTDKVFDLVRDLRKDVTIPMVFMTYANVVYSYGAEKFISTCKEIGIDGLILPDIPYEEKEEFLPLCEKYDVDLISFIAPTSKDRIAMIAKEATGFIYVISSLGVTGTRSEIKTDLASIVKVIRENTDVPCAIGFGISTPKQAKKMADISDGAIVGSAIIKIIDEYGEASPKYVGEYVKAMKDAL
>NC_012781.1|WP_012743729.1|2856678_2857887_-|ATP-binding-protein
MLCQFSFKNFKSYKETTTFDFQATSIPEFSESLLKSEKADALLPVGVIYGPNGGGKTNLLLALSCLISTVVKPIYELEKAREKIIIQQKISAAPFYFNEISRKMPTEFEVYFRQGKNEYRYNLSICGDDIVEESLYWKAIGGKRTGMVFDREGAEITLGASINKASINRSVNPKMPYLSFLAINYDIPVIVEVQKWFESCIVKNYANPIADRQIMFSDDESYRKRIVRALNDVDIDVSGYRYDEENHELYTQRMIEGKIYELSFNDESDGTKKMIAALPVILLALQEGRLVIIDELDAKLHPKLLRYVISLFKNKNVNKKGAQLLFTSHDMTTMKNTVFRRDEIWFAAENERHESEIYSLYEIRRENNERVNSTAAYDKQYLEGRYGADPYLTNMLAGGEWL
>NC_012781.1|WP_012743742.1|2867515_2868442_-|SufD-family-Fe-S-cluster-assembly-protein
MVKLDNVTEGVLDVINDNKFSQTGAFNLRENGTSICHGDSEHIKIKKKTDKPGIDIYIDGKTDGEAVYIPVVLSKSGMTDLVYNDFYVEDGADVRIVAGCGIHNSGCNESRHDGIHTFHVGKNANVRYEEKHYGEGNGTGARVLNPVTNIFVGENSVFTLDTAQIKGVDSTVRETNVELGKDAKLYVTERLMTDGEQKAESNIEVQLNGEDSSAQIVSRSVGKGNSVQTFHPNAIGNSKCQAHIQCDSIIMDHAEVGSIPEIRAKNIDAAIIHEAAIGRINDEQLLKLRTLGLTEEEAEEVIIQNFLN
>NC_012781.1|WP_041254674.1|2868443_2869178_-|ATP-binding-cassette-domain-containing-protein
MLKAENLTLNVDDEGGKKCLLNNISFQVEDGEMLVITGPNGGGKSTLAKTLIGIQTPDSGKIILDGQDITELDINHRANAGIGFAFQQPPRFKGMTVMKLLKLAAKDELSDKECCDLLTAVGLCAKDYIYRQIDGTLSGGEMKRIEIASVLAKEHSLCIFDEPEAGIDLWSFSMLIQKFEEIHTEKKQSLIVISHQEKIINMADRIMIIDGGEIKKIGTKDEVLPYLNGVQKCHKCVERLEGRA
>NC_012781.1|WP_012743744.1|2869379_2869937_-|GNAT-family-N-acetyltransferase
MIIKDIEFKLKDGRTAILRSANEKDAKALIEYMKKSTGETDFLLRTPEECETRTIEQEIDFINSCNLSDTHTLLVCEADGKIAGNCMVWWNKRAKTGHRANVAIGLLSEFWNQGIGTRMFREMIKIAESNPNILQMELDFIEGNSRARALYEKMGFRITGIKFNSIRQNDGTLCNEYSMIREISR
>NC_012781.1|WP_012743745.1|2870185_2870650_+|hypothetical-protein
MPKNRLQETVFTIMMVLVMVYAMICYNIALETGGMKNFVFKAALGEFPIMIVAGFILDTFITGPLAKKCTFKIVTPGKDRPIAIILAISVFSIWFMCPMMSFIATILFNGGFSSQIFATFCELVVRNFPMAFFWQLFVAGPLVRFIFGKIFREN
>NC_012781.1|WP_041254235.1|2870804_2871113_-|thioredoxin
MVKKINSSEFEQVKNNKAIIVDFSAEWCGPCKMLAPVMEQLSDEITDVEFYNIDVDENPDLAREYRIMNIPAVIAIKGGQVAGQQIGLVSKDDMKGFIEGVF
>NC_012781.1|WP_012743747.1|2871319_2872573_-|aminopeptidase-P-N-terminal-domain-containing-protein
MDFESRRQRILDKMEDNSIAILYSGIEHHVSADEYDLFTAQANRNFFYLTGLRRDNMVLVLDKCVEPAKTMLFIEEADPTMERWYGRKVTMEEAEEISGIDEIEYIYELESTLDRIMTREDVYTAYFDTYRHQKVDLPDYNVVKANEFRTDYPGVAVKNLFPLVAEERMQKDEDEIELTKKAIALTKDGLCNVMANLKPGMKEYQAQADFEYIIRRGGAEWTAFPTIAGSGMNGTMLHYDTNRETMEDGTLVLLDLGARIDGYNSDITRTYPVNGRFTERQKQVYDIVLAANRKIVEVAKPGMTTKELNEVCKDVLADGLMKLGLIKNSVEISKYYMHGVSHHLGIDVHDVTVDSNSRLRPGAIISDEPGLYIDEWEIGIRIEDDVLITEDGAVCLSEDIIRTTEDIEAYMAEHKKN
>NC_012781.1|WP_012743748.1|2872805_2873198_-|30S-ribosomal-protein-S9
MATTKYYGTGRRKSSVARVYLVPGTGKITINKRDIDEYLGLETLKVVVRQPLVATETVDKFDVLVNVRGGGYTGQAGAIRHGIARALLQVDSEYRPVLKSAGFLTRDPRMKERKKYGLKAARRAPQFSKR
>NC_012781.1|WP_012743749.1|2873214_2873643_-|50S-ribosomal-protein-L13
MKTFMASPATIDRKWYVVDAEGKTLGRLASEVAKVLRGKNKAIFTPHIDTGDYVIVVNADKVKVTGKKLDQKIYYHHSDYIGGMKETTLREMMNKHPERVIEYAVKGMLPKGPLGRQMYTKLFVYAGPDHKHAAQKPETLEF
>NC_012781.1|WP_041254237.1|2873957_2875532_-|MBOAT-family-protein
MELISLKYAIFVIALLVLYYCFPKKYRWYVLLAGSMAYYVIICKWYVLFIIFTICTTYGSTIWIDKLLKKQNAIVKSHKEDWDRQTRKEYKEKGRKKRVAVMLFALLCNFGILAFLKYIPYAGELGLLLPLGISFYTFQSMGYVMDVYREIVEPEKNFLKVALFVSFFPQIIQGPIAIYDKLAGQLYEGHSLRLENLQKGALLVLWGVMKKLVIADRAVNIINFVMDKPMDFSGTYVFFAAVVYALQLYADFSGGIDIVRGIAEMFGITMSTNFNHPYFSRSLTEYWHRWHMTLGDWCRNYIFYPLSISKRFLNFGKWLKPRFGAHISKVLPGCIASVITFIVIGVWHGANMKYLYFGLWNGIVIMLAELFAPVNKKVAGGFFKLTGLREKGIFATIVSVLWTFMLILVGYYFDIAANASTAFHMLFKSVTDFHISELGINNIILNLGACGLDEYDILLLIICTLLWFFISFVEENKKLDMRDFILSRKLPLRWAIIYLGIFIVIIFGYYGPGVNPADFVYMQF
>NC_012781.1|WP_041254675.1|2875625_2876861_-|hypothetical-protein
MRITKAKEKIIKNKAINSTDEGKGRHRKVIRTGAFALVFVVLFSFVSTFFKMTDAVNIATIEGFYKEPKNTIDVMMIGASEVYADYSATEAWKNYGYTSYSLGVSGVPGSLYKSMLREALTRQHPKVVVFEVNGFLQNDSYYDRTVKLHSWIDNIHNKENRLDTIKEIVPKDEQDNFRNPLKLYHSNWKDIDKCAHTFATRVGMYFAKTSCMKGFSSIAKYSDCPSGKQKKLYFTDKSRAYMTDLLEYCKAQGVEKVLFARFPHEKEIKNPQVLCDVKELVESYGYDFASFEGDKEFIGINERDDFYNSEHLNINGSRKFTAFMGKYLSDNYRLNADHSPELQSAWGECARRADKVISACAKDTDLSLGNHYFEMSVYLPYNFSSSLATNKVADTNNDAKPVNELNTPVKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NC_012781_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_012781_6

3359303-3359401

Orphan

Consensus_repeat	Method
TCACTTGCTACTGCCACTTTTTCAGAAAATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_012781_6

>merge|NC_012781|6|3359303-3359401|CRISPRCasFinder
TCACTTGCTACTGCCACTTTTTCAGAAAATCGCAACCAGCTTTTTTATAAAAGGCTGCCGGATTGCCCTCACTTGCTACTGCCACTTTTTCAGAAAATC

>NC_012781|6|6|3359303-3359401|CRISPRCasFinder
TCACTTGCTACTGCCACTTTTTCAGAAAATC	GCAACCAGCTTTTTTATAAAAGGCTGCCGGATTGCCC
TCACTTGCTACTGCCACTTTTTCAGAAAATC

Protein	Signature genes	Signature genes Name	Protein_function
NC_012781.1\|WP_012744307.1\|3360689_3361337_-\|ABC-2-transporter-permease	unknown	unknown	gnl\|CDD\|379133
NC_012781.1\|WP_012744303.1\|3356755_3357142_-\|cysteine-rich-VLP-protein	unknown	unknown	gnl\|CDD\|372957
NC_012781.1\|WP_012744308.1\|3362778_3362925_-\|membrane-protein	unknown	unknown	gnl\|CDD\|372288
NC_012781.1\|WP_002569233.1\|3354839_3355028_-\|transposon-encoded-TnpW-family-protein	unknown	unknown	gnl\|CDD\|372961
NC_012781.1\|WP_006858003.1\|3359712_3359913_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378900
NC_012781.1\|WP_004853614.1\|3364000_3364474_-\|hypothetical-protein	unknown	unknown	unknown
NC_012781.1\|WP_006555732.1\|3359905_3360349_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NC_012781.1\|WP_005933716.1\|3360500_3360668_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275321
NC_012781.1\|WP_012744298.1\|3352052_3352922_-\|hypothetical-protein	unknown	unknown	unknown
NC_012781.1\|WP_041254743.1\|3357131_3358757_-\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NC_012781.1\|WP_012744299.1\|3352934_3353096_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372288
NC_012781.1\|WP_012744302.1\|3355878_3356625_-\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|369151
NC_012781.1\|WP_005933713.1\|3361333_3362194_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NC_012781.1\|WP_012744300.1\|3353117_3354728_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239739
NC_012781.1\|WP_008402223.1\|3364990_3366214_-\|virulence-associated-protein-E	unknown	unknown	gnl\|CDD\|283041
NC_012781.1\|WP_034479871.1\|3358728_3359127_-\|plasmid-mobilization-relaxosome-protein-MobC	unknown	unknown	unknown
NC_012781.1\|WP_035394499.1\|3362196_3362574_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224639
NC_012781.1\|WP_012744297.1\|3351564_3352029_-\|PrgI-family-protein	unknown	unknown	gnl\|CDD\|378907
NC_012781.1\|WP_004853612.1\|3364559_3364724_-\|transposon-encoded-TnpW-family-protein	unknown	unknown	gnl\|CDD\|372961
NC_012781.1\|WP_012744301.1\|3355024_3355882_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153

Protein	Function_ID	Function_description	E-value
NC_012781.1\|WP_012744307.1\|3360689_3361337_-\|ABC-2-transporter-permease	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	7.6489e-23
NC_012781.1\|WP_012744303.1\|3356755_3357142_-\|cysteine-rich-VLP-protein	gnl\|CDD\|372957	pfam14194, Cys_rich_VLP, Cysteine-rich VLP. This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is approximately 60 amino acids in length. It contains 6 conserved cysteines and a conserved VLP sequence motif.	1.17609e-21
NC_012781.1\|WP_012744308.1\|3362778_3362925_-\|membrane-protein	gnl\|CDD\|372288	pfam12750, Maff2, Maff2 family. This family of short membrane proteins are related to the protein Maff2. Maff2 lies just outside the direct repeats of a tetracycline resistance transposable element. This protein may contain transmembrane helices.	3.59702e-19
NC_012781.1\|WP_002569233.1\|3354839_3355028_-\|transposon-encoded-TnpW-family-protein	gnl\|CDD\|372961	pfam14202, TnpW, Transposon-encoded protein TnpW. This family of proteins is found in bacteria. Proteins in this family are typically between 54 and 75 amino acids in length. There is a single completely conserved residue G that may be functionally important.	3.46679e-07
NC_012781.1\|WP_012744302.1\|3355878_3356625_-\|replication-initiator-protein-A	gnl\|CDD\|369151	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus. This of family of predicted proteins represents the N-terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids. Most proteins in this family are bacterial, but archaeal and eukaryotic members are also included.	7.82915e-20
NC_012781.1\|WP_006555732.1\|3359905_3360349_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	4.42589e-09
NC_012781.1\|WP_008402223.1\|3364990_3366214_-\|virulence-associated-protein-E	gnl\|CDD\|283041	pfam05272, VirE, Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins. These proteins contain a P-loop motif.	3.7122e-61
NC_012781.1\|WP_006858003.1\|3359712_3359913_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378900	pfam12645, HTH_16, Helix-turn-helix domain. This domain appears to be a helix-turn-helix domain suggesting that this might be a transcriptional regulatory protein. Some members of this family are annotated as conjugative transposon domains.	4.07904e-15
NC_012781.1\|WP_041254743.1\|3357131_3358757_-\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	2.65598e-12
NC_012781.1\|WP_012744299.1\|3352934_3353096_-\|hypothetical-protein	gnl\|CDD\|372288	pfam12750, Maff2, Maff2 family. This family of short membrane proteins are related to the protein Maff2. Maff2 lies just outside the direct repeats of a tetracycline resistance transposable element. This protein may contain transmembrane helices.	1.35269e-09
NC_012781.1\|WP_005933713.1\|3361333_3362194_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.51038e-74
NC_012781.1\|WP_012744300.1\|3353117_3354728_-\|recombinase-family-protein	gnl\|CDD\|239739	cd03770, SR_TndX_transposase, Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.	7.36602e-76
NC_012781.1\|WP_035394499.1\|3362196_3362574_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224639	COG1725, COG1725, Predicted transcriptional regulators [Transcription].	6.57908e-35
NC_012781.1\|WP_005933716.1\|3360500_3360668_-\|hypothetical-protein	gnl\|CDD\|275321	TIGR04528, pyrrolo-quinoline_quinone, acido-empty-quinoprotein group A. Members of this family closely resemble quinoproteins and quinohemoproteins such as PQQ-dependent methanol, glucose, and shikimate dehydrogenases, but restricted to species of Acidobacteria unable to synthesize PQQ. Seven members occur in candidatus Solibacter usitatus Ellin6076, eleven in Acidobacteriaceae bacterium KBS 96, etc. Members have N-terminal signal sequences. They lack the pair of adjacent Cys residues, involved in electron transfer, typical for family TIGR03075, and they lack CxxCH motifs for cytochrome c-like heme-binding. What cofactor these paralogous families of enzymes might use is unclear.	0.00165022
NC_012781.1\|WP_004853612.1\|3364559_3364724_-\|transposon-encoded-TnpW-family-protein	gnl\|CDD\|372961	pfam14202, TnpW, Transposon-encoded protein TnpW. This family of proteins is found in bacteria. Proteins in this family are typically between 54 and 75 amino acids in length. There is a single completely conserved residue G that may be functionally important.	3.02806e-12
NC_012781.1\|WP_012744297.1\|3351564_3352029_-\|PrgI-family-protein	gnl\|CDD\|378907	pfam12666, PrgI, PrgI family protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 116 and 146 amino acids in length. This protein is found in an operon that is part of a Type IV secretion system.	3.82045e-35
NC_012781.1\|WP_012744301.1\|3355024_3355882_-\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	2.67195e-129

>NC_012781.1|WP_034479871.1|3358728_3359127_-|plasmid-mobilization-relaxosome-protein-MobC
MRKRYNTPHRSRVVKTRMTEEEYAEFAERLSACNMSQAEFIRQAITGAAIRPIITVSPVNDELLAAVGKLTAEYGRIGGNLNQIARTLNEWHSPYPQLAGEVRAAVSDLAALKFEVLQKVGDAVGNIQTYQL
>NC_012781.1|WP_041254743.1|3357131_3358757_-|relaxase/mobilization-nuclease-domain-containing-protein
MATFKHISSKNADYGAAEAYLTFEHDEFTMKPTLDENGRLIPREDYRISSLNCGGEDFAVACMRANLRYEKNQKREDVKSHHYIISFDPRDGTDNGLTVDRAQELGEQFCKEHFPGHQALVCTHPDGHNHSGNIHVHIVLNSLRIYEVPLLPYMDRPADTREGCKHRCTNAAMEYFKSEVMEMCHREGLYQIDLLNGSKERITEREYWAAKKGQLALDKENAAREAAGQPTKPTKFETDKAKLRRTIRQALSQATSFDEFSSLLLREGVTVKESRGRLSYLTPDRTKPITARKLGDDFDKAAVLALLTQNAHRAAEKPKAIPEYPHTQKGRLQEEKTAKTAPADNTLQRMVDREAKRAEGKGVGYDRWAAKHNLKQMAATVTAYQQYGFSSPEELDEACSAAYAAMQESLTELKQVEKTLNRKKELQRQVLAYSKTRPVRDGLKQQKNAKAKAAYRQKHESDFIIADATARYFRENGISKLPGYKALQAEIESLIKEKNSGYNDYRAKREEYRRLQTVKGNIDQILRRSEPQRRKEQSHER
>NC_012781.1|WP_012744303.1|3356755_3357142_-|cysteine-rich-VLP-protein
MNGNIPRMDYRQYRAARRLVHECCNYDSGNCLLLEDGEPCVCVQSISYSLLCRWFTAAVLPLDEALEAALLRRGSRKRCAVCGAFFVPKSNRGKYCPDCAGRMKRINAAKRKRKQREKCHALGHFKPA
>NC_012781.1|WP_012744302.1|3355878_3356625_-|replication-initiator-protein-A
MTAETELPAYLPYPRFLLKMDISHTAKLLYALLLDRSTLSQKNGWQDSEGRTYIVYPIAEIAEMLDKGCTTIKGALNELDAAGLLERRRTGFSAANHLYVKVPDIPVVQFSDQLTDGKPPLIRAGNRPTDSRKTDLMTDGKPSPNQTNINNLIESQTKRASEGQSPAAYGRYKNVFLSDAELLELEQDFPGKWEYYLDRLSCHIASTGKQYHSHAATIYKWAQEDAAKGKAAPKQGIPDYSCKEGESL
>NC_012781.1|WP_012744301.1|3355024_3355882_-|ATP-binding-protein
MKNEIEAMITDITTTTAEAEDYTGEDGLLYCGKCHTPKEAYFSKETAQWLGHDRHPAECDCQRAAREKREAAESRQKHLETVEDLKRRGFTDPAMRNWTFEHDNGRNPQTETARFYVESWETMQAENIGYLFWGGVGTGKSYLAACIANALMEKEVAVRMTNFATILNDLAASFEGRNEYISRLCSYPLLILDDFGMERGTEYGLEQVYSVIDSRYRSGKPLIATTNLTLEELQHPQDTPHARIYDRLTSMCAPVRFTGSNFRKETAQEKLERLKQLMKQRKESL
>NC_012781.1|WP_002569233.1|3354839_3355028_-|transposon-encoded-TnpW-family-protein
MTETKQTSTTKTDRRPDCVTEIRMGNSVLTVSGFFKQGATDTAADKMMKVLEAEAATQKTAI
>NC_012781.1|WP_012744300.1|3353117_3354728_-|recombinase-family-protein
MLRQTNQQPITALYPRLSHEDELQGESNSISNQKRILETYAKQNGFSNLRWYTDDGYSGANFQRPGFQAMLADIEAGKVGTVIVKDMSRLGRNYLQVGMYTEMIFPQKGVRFIAINDGVDSAQGDNDFAPLRNIFNEWLVRDTSKKIKAVKRSKGMSGKPITSKPVYGYLMDEDENFIIDEEAAPVVKQIYNLCLAGNGPTKIARMLTEQQIPTPGTLEYRRTGSTRRYHPGYECKWATNTVVHILENREYTGCLVNFKTEKLSYKVKHSVENPPEKQVIFENHHEPIIDTQTWERVQELRKQRKRPNRYDEVGLFSGILFCADCGSVMYQQRYQTDKRKQDCYICGSYKKRTHDCTAHFIRTDLLTAGVLSNLRKVTSYAAKHEARFMKLLIEQNEDGGKRRNAAKKKELEAAEKRIAELSAIFKRLYEDSVTGRISDERFTELSADYEAEQRELKERAAAIQAELSKAQEATVNAEKFMNVVRRHTSFEELTPTLLREFVEKIVVHECSYDENKTRRQDIEIYYSFVGKVDLPE
>NC_012781.1|WP_012744299.1|3352934_3353096_-|hypothetical-protein
MRKCRIGTAKFFTLLLLLYHTSAKSQGIKQLMAGAGIMLLGTTLIPQLATLFS
>NC_012781.1|WP_012744298.1|3352052_3352922_-|hypothetical-protein
MNTIIERITEAIKDILIGLIKSCLDNMFTSVNEQVGTIAGQVGQTPQGWNAGIFNLIQNISQTVIVPIAGLIITFVLCYELITMVTQKNNFHEFETYNIFLWIFKAYVAIYLVTNTFNITMAVFDVGQHVVNNAAGVISGNTAVDASEAVARIVDALEDMELGDLFLLSMETLLISITMRILSIIITVILYGRMIEIYLYTSIAPIPFATMTNKEWGNIGNNYLKGLFALAFQGFFMMVCVGIYAVLVNAMTISSDLHAAMFSVAAYTVILAFSLFKTGSLSKSIFNAH
>NC_012781.1|WP_012744297.1|3351564_3352029_-|PrgI-family-protein
MAYVPVPKDLTKVKTKVALNLTKRQLIFFSLAAVVGIPFYLFMRKPIGSSIAAILMVTIMLPFFFMAMYEKDGLPFEKVVANIIRQKFICPAVRPYKTENFYQEISTLVKKEGVPDGKKDKAGGSAGASVPGGKKKPSGKKKQKKQKRKRTGKA
>NC_012781.1|WP_006858003.1|3359712_3359913_-|helix-turn-helix-domain-containing-protein
MSNRLLPYDTIIKAHEGDPIAIQAVLDRYAGYIRYFSKMNGYYNSDMEDYIRTKLIESLFKFRLDR
>NC_012781.1|WP_006555732.1|3359905_3360349_-|sigma-70-family-RNA-polymerase-sigma-factor
MTEYEAYQEHIRYTHDTYCRIVIRHASFDAARMLAARWKREISLEYLTEEKFVQLSTTDEYFQVPDYGETYPFSVRGQTILLDSCSLAAALARLPEQTQEEIFLYYFQHLTQKEIGEQSGWTRSTIGRHIRLALKRLKEEMEVLSHE
>NC_012781.1|WP_005933716.1|3360500_3360668_-|hypothetical-protein
MGSRRFEITETAGSVKGFYVVVDRETGVNYLVAKFGTGGGICPLIDKDGKPIISE
>NC_012781.1|WP_012744307.1|3360689_3361337_-|ABC-2-transporter-permease
MKSLVLKDLFNIGHNAKSMLFILVVFAVALIPFSGVEGYIFVCAILCSMMIVTTFSFDDSSKWTRYAMIMPVSKKELVAGKFMVLAIFCAIGSLFGLIIGFIGGLITHKIVLDIVGIGELLFLTLVAWVISLIFGSMSIPLVFKFGAEKGRVLLLVSFLIPAGICFGIYQLLTMLGVALTDQIVFILLCCSPLLALAWCYVMYQISYRIFVKQEL
>NC_012781.1|WP_005933713.1|3361333_3362194_-|ABC-transporter-ATP-binding-protein
MNAILQVENLTKQYADFKLDHVSFSVPKGTIMGLIGENGAGKSTTINAILDLIHKDDGTVTFWGQELSSTKQIKEDVGVVFDGINFYETLTPAKVGKIAGAAYKQWDGHLFQDYLKRFQLPADKEIKSLSKGMKMKLCIAVALSHNPKLLILDEATSGLDPVMRDDILDVFLEFVQDENHSILMSSHITTDLEKVADYITFIHQGKVLFCKTKDELRYNYGIIRCGAALFDQLDKAEILAYRKDDYQWNVLVADKEKARRKYKNAVVDDATIDDILLLYVKGEQAK
>NC_012781.1|WP_035394499.1|3362196_3362574_-|GntR-family-transcriptional-regulator
MEIIISSNTSKPIYEQITSQIKAMIMSGELKTGDPIPSMRALAKSIHVSVITVQKAYEDLQRDGFIETTVGRGSFVSAQNKDFYQEEQQRLAEEHLQEAADIGRISGISLEKLIELLTIFYQEED
>NC_012781.1|WP_012744308.1|3362778_3362925_-|membrane-protein
MYMAFFSSAITTLKTLVVAIGAGLGVWGVVNLLEGYGNDNPGANAHVP
>NC_012781.1|WP_004853614.1|3364000_3364474_-|hypothetical-protein
MNLWKGEFIMRKNVKIIVGVVVLILVLVVGSFVGLIINRTNDHKFGRYVSTEGPWGMTATWVSEDSASYLVCKKENDEPFANVTAYFQGVDGWQAYELNSIDRIVYLDIVKDGVVVDGTSGYMKFDGTTFTITDLDKDTFGADEFHYVITDKEFSPD
>NC_012781.1|WP_004853612.1|3364559_3364724_-|transposon-encoded-TnpW-family-protein
MENRKSHTPVALRKQIGGTMYVVRVHFNEDAEESMKDKIKRLIENDVRANQHTA
>NC_012781.1|WP_008402223.1|3364990_3366214_-|virulence-associated-protein-E
MNDPNLQGAFRLNMFTDKIDITRDLGWYRESDSLTDVDLKFLVVYLEKHYGLSNEKRIEDVIKVVANENRYHPVLDRINSITWDGRERIRYALHHFLGAEVSEYTYEVMKLFMIGTIARISCPGIKFEVMLCLVGGQGAGKSTFLRFLAMEDDWFTDDLKKMDDDNVYRKIQGHLIIEFPEMVAILNAKNVEDTKSFMSRQKDTYKTPYDRHPKDHKRQCVFAGSSNSLDFLPMDRSGNRRFLPILCNMEEAETHILDDEKTSREYIDQMWAEAMEIYRSGKCQLRLPKEMEKELCEYQKQFMQEDTKKELILDYLEHYEGSMVCSRQLYSEALGNDGNPAQWEIREINDIMNNCSDWIAFSNPRHFPEPYRRQKGWEKPDNRGQDFQPITKEQMEQLSLPPEWMER

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_012781_3	3.19\|2354071\|34\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	2354071-2354104	34	HG796312	Uncultured bacterium plasmid pRGI00363	1665-1698	0	1.0
NC_012781_3	3.20\|2354137\|36\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	2354137-2354172	36	HG796312	Uncultured bacterium plasmid pRGI00363	623-658	0	1.0
NC_012781_2	2.26\|1598576\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598576-1598605	30	NC_012782	[Eubacterium] eligens ATCC 27750 plasmid unnamed, complete sequence	45565-45594	1	0.967
NC_012781_2	2.7\|1597329\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597329-1597358	30	NZ_CP042507	Leclercia adecarboxylata strain E1 plasmid pE1_002, complete sequence	135101-135130	4	0.867
NC_012781_2	2.7\|1597329\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597329-1597358	30	NZ_CP040895	Leclercia adecarboxylata strain Z96-1 plasmid pIMP-Z96-1, complete sequence	21659-21688	4	0.867
NC_012781_2	2.7\|1597329\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597329-1597358	30	NZ_CP052873	Enterobacter cloacae strain 3849 plasmid p3846III, complete sequence	162838-162867	4	0.867
NC_012781_2	2.7\|1597329\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597329-1597358	30	NZ_CP026390	Leclercia sp. LSNIH3 plasmid pLEC-5e18, complete sequence	117217-117246	4	0.867
NC_012781_2	2.7\|1597329\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597329-1597358	30	NZ_CP042495	Leclercia adecarboxylata strain E61 plasmid pE61_002, complete sequence	47731-47760	4	0.867
NC_012781_2	2.4\|1597132\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597132-1597161	30	MK448364	Streptococcus satellite phage Javan211, complete genome	6526-6555	5	0.833
NC_012781_2	2.10\|1597525\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597525-1597554	30	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	381478-381507	5	0.833
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP023672	Clostridium septicum strain DSM 7534 plasmid unnamed1, complete sequence	4587-4615	5	0.828
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	LR588166	Pseudomonas phage vB_PaeM_MIJ3	186760-186788	5	0.828
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	MH121069	Pseudomonas phage vB_PaeM_PA5oct, complete genome	16089-16117	5	0.828
NC_012781_2	2.3\|1597066\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597066-1597095	30	CP034667	Proteus vulgaris strain PvSC3 plasmid pPvSC3, complete sequence	112119-112148	6	0.8
NC_012781_2	2.6\|1597263\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597263-1597292	30	NZ_CP010590	Phaeobacter gallaeciensis strain P11 plasmid pP11_b, complete sequence	80849-80878	6	0.8
NC_012781_2	2.6\|1597263\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597263-1597292	30	NZ_CP010675	Phaeobacter gallaeciensis strain P75 plasmid pP75_b, complete sequence	77359-77388	6	0.8
NC_012781_2	2.6\|1597263\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597263-1597292	30	NC_023148	Phaeobacter gallaeciensis DSM 26640 plasmid pGal_B134, complete sequence	80940-80969	6	0.8
NC_012781_2	2.6\|1597263\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597263-1597292	30	NZ_CP010791	Phaeobacter gallaeciensis strain P63 plasmid pP63_x_draft, complete sequence	77359-77388	6	0.8
NC_012781_2	2.6\|1597263\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597263-1597292	30	NZ_CP010631	Phaeobacter inhibens strain P78 plasmid pP78_b, complete sequence	77359-77388	6	0.8
NC_012781_2	2.6\|1597263\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597263-1597292	30	NZ_CP030100	Roseovarius sp. AK1035 plasmid unnamed, complete sequence	121212-121241	6	0.8
NC_012781_2	2.6\|1597263\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597263-1597292	30	NZ_CP020332	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM259, complete sequence	179056-179085	6	0.8
NC_012781_2	2.6\|1597263\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597263-1597292	30	NZ_CP010619	Phaeobacter inhibens strain P30 isolate M4-3.1A plasmid pP30_b, complete sequence	119556-119585	6	0.8
NC_012781_2	2.6\|1597263\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597263-1597292	30	NZ_CP010638	Phaeobacter gallaeciensis strain P73 plasmid pP73_b, complete sequence	77359-77388	6	0.8
NC_012781_2	2.6\|1597263\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597263-1597292	30	NZ_CP020475	Roseovarius mucosus strain SMR3 plasmid pSMR3-1, complete sequence	155580-155609	6	0.8
NC_012781_2	2.12\|1597657\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597657-1597686	30	NZ_LR723678	Arsenite-oxidising bacterium NT-25 plasmid 2	161232-161261	6	0.8
NC_012781_2	2.12\|1597657\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597657-1597686	30	NZ_FO082821	Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence	242453-242482	6	0.8
NC_012781_2	2.18\|1598051\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1598051-1598080	30	KP836356	Marinitoga camini virus 2, complete genome	21145-21174	6	0.8
NC_012781_2	2.18\|1598051\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1598051-1598080	30	KP836355	Marinitoga camini virus 1, complete genome	12209-12238	6	0.8
NC_012781_2	2.38\|1599369\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599369-1599398	30	NZ_CP014284	Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence	8882-8911	6	0.8
NC_012781_2	2.38\|1599369\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599369-1599398	30	NZ_CP032609	Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence	96498-96527	6	0.8
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NC_015712	Clostridium perfringens plasmid pCPPB-1, complete sequence	14135-14163	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	CP020757	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-18, complete sequence	82065-82093	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP017722	Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 plasmid pCFSAN017963_02, complete sequence	6056-6084	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP043858	Arcobacter cibarius strain H743 plasmid pACIB, complete sequence	38931-38959	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NC_011973	Bacillus cereus Q1 plasmid pBc239, complete sequence	93785-93813	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	165280-165308	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP053953	Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence	169660-169688	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP009636	Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence	70666-70694	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NC_022882	Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence	113999-114027	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP011157	Bacillus cereus strain HN001 plasmid pRML02, complete sequence	77636-77664	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NC_022877	Bacillus thuringiensis YBT-1518 plasmid pBMB0232, complete sequence	118114-118142	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP010091	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence	174218-174246	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NC_018492	Bacillus cereus FRI-35 plasmid p01, complete sequence	199022-199050	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	MK471334	Enterobacter cloacae plasmid pNRZ-28021, complete sequence	91970-91998	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	119374-119402	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP053962	Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence	135042-135070	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	59527-59555	6	0.793
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP053950	Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence	63907-63935	6	0.793
NC_012781_2	2.2\|1597000\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597000-1597029	30	KF302035	UNVERIFIED: Pseudoalteromonas phage HS6, complete genome	14395-14424	7	0.767
NC_012781_2	2.4\|1597132\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597132-1597161	30	NC_049931	Enterococcus phage vB_EfaP_IME199, complete genome	11862-11891	7	0.767
NC_012781_2	2.5\|1597198\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597198-1597226	29	MG589386	Pseudomonas phage phiPA01_EW, complete genome	45823-45851	7	0.759
NC_012781_2	2.5\|1597198\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597198-1597226	29	NC_028933	Pseudomonas phage PhiCHU, complete genome	602-630	7	0.759
NC_012781_2	2.7\|1597329\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597329-1597358	30	AP014435	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S41-C155, * SEQUENCING IN PROGRESS *, 2 ordered pieces	7894-7923	7	0.767
NC_012781_2	2.7\|1597329\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597329-1597358	30	AP013443	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22C-MedDCM-OCT-S23-C7	16785-16814	7	0.767
NC_012781_2	2.7\|1597329\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597329-1597358	30	AP013725	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S35-C275, * SEQUENCING IN PROGRESS *	1107-1136	7	0.767
NC_012781_2	2.7\|1597329\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597329-1597358	30	AP014433	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S41-C103, * SEQUENCING IN PROGRESS *, 6 ordered pieces	18488-18517	7	0.767
NC_012781_2	2.7\|1597329\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597329-1597358	30	AP014428	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S29-C101, * SEQUENCING IN PROGRESS *, 7 ordered pieces	11859-11888	7	0.767
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP016361	Bacillus cereus strain M13 plasmid pBCM1301, complete sequence	34416-34444	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP024121	Bacillus cytotoxicus strain CH_1 plasmid pCh1_53, complete sequence	48113-48141	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP024114	Bacillus cytotoxicus strain CH_3 plasmid pCh3_53, complete sequence	11542-11570	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_AP014868	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK4, complete sequence	1614-1642	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NC_020392	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-63, complete sequence	19968-19996	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP024102	Bacillus cytotoxicus strain CH_25 plasmid pCh25_53, complete sequence	30993-31021	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP004873	Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB65, complete sequence	43070-43098	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP024099	Bacillus cytotoxicus strain CH_38 plasmid pCh38_53, complete sequence	38849-38877	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP047088	Bacillus paranthracis strain BC307 plasmid pCE3, complete sequence	51060-51088	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP007613	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB69, complete sequence	37971-37999	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP004862	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB53, complete sequence	45682-45710	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP024105	Bacillus cytotoxicus strain CH_23 plasmid pCh23_53, complete sequence	30329-30357	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP024117	Bacillus cytotoxicus strain CH_2 plasmid pCh2_53, complete sequence	13807-13835	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NZ_CP010094	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB55, complete sequence	47304-47332	7	0.759
NC_012781_2	2.8\|1597395\|29\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597395-1597423	29	NC_020249	Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pHT73, complete sequence	73021-73049	7	0.759
NC_012781_2	2.10\|1597525\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597525-1597554	30	NC_022875	Bacillus thuringiensis YBT-1518 plasmid pBMB0230, complete sequence	44727-44756	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	MH355583	Enterococcus phage vB_EfaS_LM99, complete genome	5943-5972	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	MT857001	Enterococcus phage EFA1, complete genome	6990-7019	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	KT932701	Enterococcus phage vB_EfaS_IME196, complete genome	6555-6584	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	MH203383	Ecterococcus phage vB_EfaS_AL3, complete genome	7419-7448	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	NC_015270	Enterococcus phage EFRM31, complete genome	15097-15126	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	MK721200	Enterococcus phage vB_EfaS_Ef5.3, complete genome	6862-6891	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	NC_042022	Enterococcus phage phiSHEF4, complete genome	350-379	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	NC_042021	Enterococcus phage phiSHEF2, complete genome	6987-7016	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	JX193904	Enterococcus phage EfaCPT1, complete genome	5563-5592	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	NC_042126	Enterococcus phage vB_EfaS_AL3, complete genome	7419-7448	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	KX284704	Enterococcus phage SANTOR1, complete genome	4127-4156	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	KJ127304	Enterococcus phage AUEF3, partial genome	39383-39412	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	MH375074	Enterococcus phage LY0323, complete genome	33878-33907	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	NC_042127	Enterococcus phage vB_EfaS_AL2, complete genome	33665-33694	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	MH193369	Enterococcus phage LY0322, complete genome	33448-33477	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	NC_031260	Enterococcus phage Ec-ZZ2, complete genome	23676-23705	7	0.767
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	KF733017	Enterococcus phage IME-EF4, complete genome	33810-33839	7	0.767
NC_012781_2	2.18\|1598051\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1598051-1598080	30	NZ_AP018173	Calothrix sp. NIES-2098 plasmid plasmid1 DNA, complete genome	99060-99089	7	0.767
NC_012781_2	2.20\|1598183\|29\|NC_012781\|CRISPRCasFinder,CRT	1598183-1598211	29	NZ_CP031267	Staphylococcus warneri strain 16A plasmid unnamed3	63060-63088	7	0.759
NC_012781_2	2.20\|1598183\|29\|NC_012781\|CRISPRCasFinder,CRT	1598183-1598211	29	NZ_CP017464	Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence	113029-113057	7	0.759
NC_012781_2	2.20\|1598183\|29\|NC_012781\|CRISPRCasFinder,CRT	1598183-1598211	29	NZ_CP031281	Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence	51694-51722	7	0.759
NC_012781_2	2.20\|1598183\|29\|NC_012781\|CRISPRCasFinder,CRT	1598183-1598211	29	NZ_CP031281	Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence	93628-93656	7	0.759
NC_012781_2	2.20\|1598183\|29\|NC_012781\|CRISPRCasFinder,CRT	1598183-1598211	29	NZ_CP053471	Staphylococcus warneri strain WB224 plasmid pWB224_1, complete sequence	2865-2893	7	0.759
NC_012781_2	2.24\|1598444\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598444-1598473	30	CP024687	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence	42331-42360	7	0.767
NC_012781_2	2.25\|1598510\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598510-1598539	30	NC_014030	Salinibacter ruber M8 plasmid pSR61, complete sequence	1043-1072	7	0.767
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	MF399199	Acinetobacter baumannii strain D46 plasmid pD46-4, complete sequence	65143-65171	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP040051	Acinetobacter baumannii strain VB16141 plasmid unnamed1, complete sequence	162065-162093	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	MK531540	Acinetobacter baumannii strain MC75 plasmid pMC75.1, complete sequence	86664-86692	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP039024	Acinetobacter baumannii ATCC 17978 substr. PMR-High plasmid unnamed1	28855-28883	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_AP014650	Acinetobacter baumannii strain IOMTU433 plasmid pIOMTU433, complete sequence	186372-186400	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP012007	Acinetobacter baumannii strain Ab04-mff plasmid pAB04-1, complete sequence	131870-131898	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	134438-134466	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	CP035932	Acinetobacter baumannii strain VB31459 plasmid unnamed2, complete sequence	5746-5774	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	CP035932	Acinetobacter baumannii strain VB31459 plasmid unnamed2, complete sequence	31572-31600	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	MK531536	Acinetobacter baumannii strain MC1 plasmid pMC1.1, complete sequence	116862-116890	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP027531	Acinetobacter baumannii strain AR_0088 plasmid unnamed1, complete sequence	30787-30815	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP050416	Acinetobacter baumannii strain PM193665 plasmid pPM193665_1, complete sequence	135765-135793	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP015485	Acinetobacter baumannii strain ORAB01 plasmid pORAB01-2, complete sequence	9281-9309	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP050426	Acinetobacter baumannii strain PM194188 plasmid pPM194122_1, complete sequence	135765-135793	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	CP040054	Acinetobacter baumannii strain VB35179 plasmid unnamed1, complete sequence	193990-194018	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP050433	Acinetobacter baumannii strain PM194229 plasmid pPM194229_1, complete sequence	211774-211802	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP050386	Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence	174380-174408	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	LT605060	Acinetobacter calcoaceticus strain NCTC7364 genome assembly, plasmid: 2	143891-143919	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_KU744946	Acinetobacter baumannii strain A297 (RUH875) plasmid pA297-3 clone Global clone 1 (GC1), complete sequence	61954-61982	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP020596	Acinetobacter baumannii strain HWBA8 plasmid pHWBA8_1, complete sequence	25283-25311	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP040260	Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence	65047-65075	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_KT779035	Acinetobacter baumannii strain D4 plasmid pD4, complete sequence	69448-69476	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP022285	Acinetobacter baumannii strain 7804 plasmid pAba7804b, complete sequence	72808-72836	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_MK323043	Acinetobacter baumannii strain Acb-45063 plasmid pAb45063_b, complete sequence	97967-97995	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP012005	Acinetobacter baumannii strain ATCC 17978-mff plasmid pAB3, complete sequence	102527-102555	7	0.759
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	CP033562	Acinetobacter nosocomialis strain 2010S01-197 plasmid p2010S01-197-1, complete sequence	28322-28350	7	0.759
NC_012781_2	2.29\|1598774\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598774-1598803	30	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	1375856-1375885	7	0.767
NC_012781_2	2.36\|1599236\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599236-1599265	30	NZ_CP015630	Borrelia turicatae strain BTE5EL plasmid lp159	73292-73321	7	0.767
NC_012781_2	2.36\|1599236\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599236-1599265	30	MT711976	Streptomyces phage Coruscant, complete genome	25109-25138	7	0.767
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_AP017460	Candidatus Endomicrobium trichonymphae strain Rs-D1 plasmid pRSTT1, complete sequence	3919-3947	7	0.759
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NZ_CP013044	Clostridium perfringens strain JP55 plasmid pJFP55J, complete sequence	17932-17960	7	0.759
NC_012781_3	3.5\|2353149\|33\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	2353149-2353181	33	MN234234	Arthrobacter phage Lymara, complete genome	46851-46883	7	0.788
NC_012781_2	2.2\|1597000\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597000-1597029	30	MK448873	Streptococcus phage Javan202, complete genome	18621-18650	8	0.733
NC_012781_2	2.3\|1597066\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597066-1597095	30	NZ_CP043762	Paenibacillus sp. 37 plasmid pART37, complete sequence	93585-93614	8	0.733
NC_012781_2	2.7\|1597329\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597329-1597358	30	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	95219-95248	8	0.733
NC_012781_2	2.10\|1597525\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597525-1597554	30	NC_014389	Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence	79888-79917	8	0.733
NC_012781_2	2.10\|1597525\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597525-1597554	30	MN131137	Aeromonas phage D6, complete genome	151972-152001	8	0.733
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP010104	Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence	9750-9778	8	0.724
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP010104	Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence	10743-10771	8	0.724
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP010104	Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence	31226-31254	8	0.724
NC_012781_2	2.28\|1598709\|29\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598709-1598737	29	NZ_CP010104	Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence	39974-40002	8	0.724
NC_012781_2	2.30\|1598840\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598840-1598869	30	NZ_CP042265	Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence	20736-20765	8	0.733
NC_012781_2	2.32\|1598972\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598972-1599001	30	NZ_CP046164	Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence	162506-162535	8	0.733
NC_012781_2	2.32\|1598972\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598972-1599001	30	NZ_CP046067	Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence	307316-307345	8	0.733
NC_012781_2	2.32\|1598972\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598972-1599001	30	NZ_CP045357	Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence	21341-21370	8	0.733
NC_012781_2	2.32\|1598972\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598972-1599001	30	MN871444	UNVERIFIED: Serratia phage KpGz_1, complete genome	261653-261682	8	0.733
NC_012781_2	2.33\|1599038\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599038-1599067	30	MK931297	Escherichia phage vB_EcoP_3HA13, complete genome	1938-1967	8	0.733
NC_012781_2	2.33\|1599038\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599038-1599067	30	MH992123	UNVERIFIED: Escherichia phage OLB145, complete genome	1938-1967	8	0.733
NC_012781_2	2.41\|1599567\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599567-1599596	30	MK250021	Prevotella phage Lak-B2, complete genome	25176-25205	8	0.733
NC_012781_2	2.41\|1599567\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599567-1599596	30	MK250024	Prevotella phage Lak-B5, complete genome	24242-24271	8	0.733
NC_012781_2	2.41\|1599567\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599567-1599596	30	MK250028	Prevotella phage Lak-B9, complete genome	25170-25199	8	0.733
NC_012781_2	2.41\|1599567\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599567-1599596	30	MK250023	Prevotella phage Lak-B4, complete genome	25194-25223	8	0.733
NC_012781_2	2.41\|1599567\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599567-1599596	30	MK250025	Prevotella phage Lak-B6, complete genome	24226-24255	8	0.733
NC_012781_2	2.41\|1599567\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599567-1599596	30	MK250022	Prevotella phage Lak-B3, complete genome	24241-24270	8	0.733
NC_012781_2	2.41\|1599567\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599567-1599596	30	MK250027	Prevotella phage Lak-B8, complete genome	25194-25223	8	0.733
NC_012781_2	2.41\|1599567\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599567-1599596	30	MK250026	Prevotella phage Lak-B7, complete genome	25194-25223	8	0.733
NC_012781_2	2.41\|1599567\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1599567-1599596	30	MK250020	Prevotella phage Lak-B1, complete genome	25150-25179	8	0.733
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	NC_041877	Pseudomonas phage SM1, complete genome	63136-63164	8	0.724
NC_012781_2	2.44\|1599765\|29\|NC_012781\|CRISPRCasFinder,CRT	1599765-1599793	29	JQ067090	UNVERIFIED: Pseudomonas phage PaMx31, partial genome	87044-87072	8	0.724
NC_012781_3	3.5\|2353149\|33\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	2353149-2353181	33	NZ_CP031599	Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence	174007-174039	8	0.758
NC_012781_2	2.13\|1597723\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597723-1597752	30	NC_042076	Shigella phage Sf17, complete genome	1795-1824	9	0.7
NC_012781_2	2.29\|1598774\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598774-1598803	30	NZ_CP044976	Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence	76634-76663	9	0.7
NC_012781_2	2.32\|1598972\|30\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	1598972-1599001	30	MN850615	Escherichia phage kvi, complete genome	94015-94044	9	0.7
NC_012781_3	3.10\|2353477\|34\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	2353477-2353510	34	NZ_AP021877	Desulfosarcina ovata strain 28bB2T plasmid Do28_1, complete sequence	128184-128217	9	0.735
NC_012781_2	2.3\|1597066\|30\|NC_012781\|PILER-CR,CRISPRCasFinder,CRT	1597066-1597095	30	NZ_AP018204	Leptolyngbya boryana NIES-2135 plasmid plasmid1 DNA, complete genome	399942-399971	10	0.667
NC_012781_3	3.2\|2352950\|34\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	2352950-2352983	34	NZ_CP019438	Thioclava nitratireducens strain 25B10_4 plasmid unnamed1, complete sequence	92666-92699	10	0.706
NC_012781_3	3.2\|2352950\|34\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	2352950-2352983	34	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	314078-314111	10	0.706
NC_012781_3	3.19\|2354071\|34\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	2354071-2354104	34	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1003828-1003861	12	0.647
NC_012781_3	3.19\|2354071\|34\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	2354071-2354104	34	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1003915-1003948	12	0.647
NC_012781_3	3.19\|2354071\|34\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	2354071-2354104	34	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1003911-1003944	12	0.647
NC_012781_3	3.19\|2354071\|34\|NC_012781\|CRISPRCasFinder,CRT,PILER-CR	2354071-2354104	34	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1003896-1003929	12	0.647

1. spacer 3.19|2354071|34|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to HG796312 (Uncultured bacterium plasmid pRGI00363) position: , mismatch: 0, identity: 1.0

gctgttgagtttttccaagttcgacagagcgaga	CRISPR spacer
gctgttgagtttttccaagttcgacagagcgaga	Protospacer
**********************************

2. spacer 3.20|2354137|36|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to HG796312 (Uncultured bacterium plasmid pRGI00363) position: , mismatch: 0, identity: 1.0

gtttccctgtcttccaatttttcgcccgcacgatat	CRISPR spacer
gtttccctgtcttccaatttttcgcccgcacgatat	Protospacer
************************************

3. spacer 2.26|1598576|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NC_012782 ([Eubacterium] eligens ATCC 27750 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.967

agagcctttatatcctctaagctggttact	CRISPR spacer
agagcctttatatcctctaatctggttact	Protospacer
******************** *********

4. spacer 2.7|1597329|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042507 (Leclercia adecarboxylata strain E1 plasmid pE1_002, complete sequence) position: , mismatch: 4, identity: 0.867

catgaaaaaattccttcttaaagtaattct	CRISPR spacer
cctgaaaaattgccttcttaaagtaattgt	Protospacer
* ******* * **************** *

5. spacer 2.7|1597329|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040895 (Leclercia adecarboxylata strain Z96-1 plasmid pIMP-Z96-1, complete sequence) position: , mismatch: 4, identity: 0.867

catgaaaaaattccttcttaaagtaattct	CRISPR spacer
cctgaaaaattgccttcttaaagtaattgt	Protospacer
* ******* * **************** *

6. spacer 2.7|1597329|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052873 (Enterobacter cloacae strain 3849 plasmid p3846III, complete sequence) position: , mismatch: 4, identity: 0.867

catgaaaaaattccttcttaaagtaattct	CRISPR spacer
cctgaaaaattgccttcttaaagtaattgt	Protospacer
* ******* * **************** *

7. spacer 2.7|1597329|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026390 (Leclercia sp. LSNIH3 plasmid pLEC-5e18, complete sequence) position: , mismatch: 4, identity: 0.867

catgaaaaaattccttcttaaagtaattct	CRISPR spacer
cctgaaaaattgccttcttaaagtaattgt	Protospacer
* ******* * **************** *

8. spacer 2.7|1597329|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042495 (Leclercia adecarboxylata strain E61 plasmid pE61_002, complete sequence) position: , mismatch: 4, identity: 0.867

catgaaaaaattccttcttaaagtaattct	CRISPR spacer
cctgaaaaattgccttcttaaagtaattgt	Protospacer
* ******* * **************** *

9. spacer 2.4|1597132|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to MK448364 (Streptococcus satellite phage Javan211, complete genome) position: , mismatch: 5, identity: 0.833

aattgcggagtatgcaaaaacaaca-atgct	CRISPR spacer
aattgcggaatatgcaaaagcaaaagatga-	Protospacer
*********.*********.*** * ***

10. spacer 2.10|1597525|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.833

aagaacaaatctatcaaaggaagatattct	CRISPR spacer
aagaacaaatctatcaagggaatctgctct	Protospacer
*****************.****  *..***

11. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP023672 (Clostridium septicum strain DSM 7534 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.828

tttttttattttaatgtacataaaactat	CRISPR spacer
tttttttattttaatttaaataaatatct	Protospacer
*************** ** *****  * *

12. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to LR588166 (Pseudomonas phage vB_PaeM_MIJ3) position: , mismatch: 5, identity: 0.828

tttttttattttaatgtacataaaactat	CRISPR spacer
tttttatattttaaggtacataatcctgt	Protospacer
***** ******** ********  **.*

13. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to MH121069 (Pseudomonas phage vB_PaeM_PA5oct, complete genome) position: , mismatch: 5, identity: 0.828

tttttttattttaatgtacataaaactat	CRISPR spacer
tttttatattttaaggtacataatcctgt	Protospacer
***** ******** ********  **.*

14. spacer 2.3|1597066|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to CP034667 (Proteus vulgaris strain PvSC3 plasmid pPvSC3, complete sequence) position: , mismatch: 6, identity: 0.8

atgaaatagacaagctaaaacaggaagtac-	CRISPR spacer
tgaaaatcgacaagctaaaacagcaa-tacg	Protospacer
  .**** *************** ** ***

15. spacer 2.6|1597263|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010590 (Phaeobacter gallaeciensis strain P11 plasmid pP11_b, complete sequence) position: , mismatch: 6, identity: 0.8

ttgcatagcagccagccggaaagaaaggtg	CRISPR spacer
gtcgattgcagccagccggaaagaaagaag	Protospacer
 *  ** ********************. *

16. spacer 2.6|1597263|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010675 (Phaeobacter gallaeciensis strain P75 plasmid pP75_b, complete sequence) position: , mismatch: 6, identity: 0.8

ttgcatagcagccagccggaaagaaaggtg	CRISPR spacer
gtcgattgcagccagccggaaagaaagaag	Protospacer
 *  ** ********************. *

17. spacer 2.6|1597263|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_023148 (Phaeobacter gallaeciensis DSM 26640 plasmid pGal_B134, complete sequence) position: , mismatch: 6, identity: 0.8

ttgcatagcagccagccggaaagaaaggtg	CRISPR spacer
gtcgattgcagccagccggaaagaaagaag	Protospacer
 *  ** ********************. *

18. spacer 2.6|1597263|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010791 (Phaeobacter gallaeciensis strain P63 plasmid pP63_x_draft, complete sequence) position: , mismatch: 6, identity: 0.8

ttgcatagcagccagccggaaagaaaggtg	CRISPR spacer
gtcgattgcagccagccggaaagaaagaag	Protospacer
 *  ** ********************. *

19. spacer 2.6|1597263|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010631 (Phaeobacter inhibens strain P78 plasmid pP78_b, complete sequence) position: , mismatch: 6, identity: 0.8

ttgcatagcagccagccggaaagaaaggtg	CRISPR spacer
gtcgattgcagccagccggaaagaaagaag	Protospacer
 *  ** ********************. *

20. spacer 2.6|1597263|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030100 (Roseovarius sp. AK1035 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ttgcatagcagccagccggaaagaaaggtg	CRISPR spacer
gtcgattgcagccagccggaaagaaagaag	Protospacer
 *  ** ********************. *

21. spacer 2.6|1597263|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020332 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM259, complete sequence) position: , mismatch: 6, identity: 0.8

ttgcatagcagccagccggaaagaaaggtg	CRISPR spacer
gtcgattgcagccagccggaaagaaagaag	Protospacer
 *  ** ********************. *

22. spacer 2.6|1597263|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010619 (Phaeobacter inhibens strain P30 isolate M4-3.1A plasmid pP30_b, complete sequence) position: , mismatch: 6, identity: 0.8

ttgcatagcagccagccggaaagaaaggtg	CRISPR spacer
gtcgattgcagccagccggaaagaaagaag	Protospacer
 *  ** ********************. *

23. spacer 2.6|1597263|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010638 (Phaeobacter gallaeciensis strain P73 plasmid pP73_b, complete sequence) position: , mismatch: 6, identity: 0.8

ttgcatagcagccagccggaaagaaaggtg	CRISPR spacer
gtcgattgcagccagccggaaagaaagaag	Protospacer
 *  ** ********************. *

24. spacer 2.6|1597263|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020475 (Roseovarius mucosus strain SMR3 plasmid pSMR3-1, complete sequence) position: , mismatch: 6, identity: 0.8

ttgcatagcagccagccggaaagaaaggtg	CRISPR spacer
gtcgattgcagccagccggaaagaaagaag	Protospacer
 *  ** ********************. *

25. spacer 2.12|1597657|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR723678 (Arsenite-oxidising bacterium NT-25 plasmid 2) position: , mismatch: 6, identity: 0.8

gatcacatacatcaatcagatcatcgccca	CRISPR spacer
ggacgcgtacatcgatcagaacatcgccca	Protospacer
*. *.*.******.****** *********

26. spacer 2.12|1597657|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_FO082821 (Rhizobium sp. NT-26 plasmid NT26_p1, complete sequence) position: , mismatch: 6, identity: 0.8

gatcacatacatcaatcagatcatcgccca	CRISPR spacer
ggacgcgtacatcgatcagaacatcgccca	Protospacer
*. *.*.******.****** *********

27. spacer 2.18|1598051|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to KP836356 (Marinitoga camini virus 2, complete genome) position: , mismatch: 6, identity: 0.8

aaaaatgtttctgattgcaaaagcagatta---	CRISPR spacer
aaaaatgtttttgattccaaa---agatttgaa	Protospacer
**********.***** ****   *****

28. spacer 2.18|1598051|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to KP836355 (Marinitoga camini virus 1, complete genome) position: , mismatch: 6, identity: 0.8

aaaaatgtttctgattgcaaaagcagatta---	CRISPR spacer
aaaaatgtttttgattccaaa---agatttgaa	Protospacer
**********.***** ****   *****

29. spacer 2.38|1599369|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014284 (Bacillus thuringiensis strain Bt185 plasmid pBT1850294, complete sequence) position: , mismatch: 6, identity: 0.8

atcatcataaacaaggccattatcaatgca-	CRISPR spacer
ttgatcataaacaaggacattatc-acgcgt	Protospacer
 * ************* ******* *.**.

30. spacer 2.38|1599369|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032609 (Bacillus thuringiensis strain QZL38 plasmid p.2, complete sequence) position: , mismatch: 6, identity: 0.8

atcatcataaacaaggccattatcaatgca-	CRISPR spacer
ttgatcataaacaaggacattatc-acgcgt	Protospacer
 * ************* ******* *.**.

31. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NC_015712 (Clostridium perfringens plasmid pCPPB-1, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
cttttttattttaaagtatataaaattta	Protospacer
.************* ***.******.*

32. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to CP020757 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-18, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
gttttttattttaatttatataaaaaatt	Protospacer
 ************** **.******   *

33. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP017722 (Salmonella enterica subsp. enterica serovar Minnesota strain CFSAN017963 plasmid pCFSAN017963_02, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tttgtttcttttaatgtacataaatcatg	Protospacer
*** *** **************** *

34. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP043858 (Arcobacter cibarius strain H743 plasmid pACIB, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
gtttttgattttaatgtagataaaccatt	Protospacer
 ***** *********** ***** *  *

35. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NC_011973 (Bacillus cereus Q1 plasmid pBc239, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tgtttttcttttattgtacataaaagagt	Protospacer
* ***** ***** ***********  .*

36. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tgtttttcttttattgtacataaaagagt	Protospacer
* ***** ***** ***********  .*

37. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP053953 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tgtttttcttttattgtacataaaaaagt	Protospacer
* ***** ***** ***********  .*

38. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP009636 (Bacillus cereus 03BB108 plasmid pBFI_2, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tgtttttcttttattgtacataaaagagt	Protospacer
* ***** ***** ***********  .*

39. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NC_022882 (Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tatttttcttttattgtacataaaagagt	Protospacer
* ***** ***** ***********  .*

40. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP011157 (Bacillus cereus strain HN001 plasmid pRML02, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tgtttttcttttattgtacataaaagagt	Protospacer
* ***** ***** ***********  .*

41. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NC_022877 (Bacillus thuringiensis YBT-1518 plasmid pBMB0232, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tatttttcttttattgtacataaaagagt	Protospacer
* ***** ***** ***********  .*

42. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP010091 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tgtttttcttttattgtacataaaagagt	Protospacer
* ***** ***** ***********  .*

43. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NC_018492 (Bacillus cereus FRI-35 plasmid p01, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tgtttttcttttattgtacataaaagagt	Protospacer
* ***** ***** ***********  .*

44. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to MK471334 (Enterobacter cloacae plasmid pNRZ-28021, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
cttttttattttgatgtaaataaaccaac	Protospacer
.***********.***** ***** * *.

45. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tgtttttcttttattgtacataaaaggag	Protospacer
* ***** ***** ***********  *

46. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP053962 (Bacillus cereus strain FDAARGOS_802 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tgtttttcttttattgtacataaaagagt	Protospacer
* ***** ***** ***********  .*

47. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tgtttttcttttattgtacataaaagagt	Protospacer
* ***** ***** ***********  .*

48. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP053950 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.793

tttttttattttaatgtacataaaactat	CRISPR spacer
tgtttttcttttattgtacataaaaaagt	Protospacer
* ***** ***** ***********  .*

49. spacer 2.2|1597000|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to KF302035 (UNVERIFIED: Pseudoalteromonas phage HS6, complete genome) position: , mismatch: 7, identity: 0.767

gagcaacaatggagaaaataccacgaatgg	CRISPR spacer
tgttaacaatggagaaaacaccatgaatgc	Protospacer
 . .**************.****.*****

50. spacer 2.4|1597132|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_049931 (Enterococcus phage vB_EfaP_IME199, complete genome) position: , mismatch: 7, identity: 0.767

aattgcggagtatgcaaaaacaacaatgct	CRISPR spacer
taatgcggattatgcaaaaacaccaatagg	Protospacer
 * ****** ************ ****.

51. spacer 2.5|1597198|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to MG589386 (Pseudomonas phage phiPA01_EW, complete genome) position: , mismatch: 7, identity: 0.759

gcattttagccttgacacgccaagcctaa	CRISPR spacer
ttagcgtagccttgacaagccaagcccaa	Protospacer
 .* . *********** ********.**

52. spacer 2.5|1597198|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_028933 (Pseudomonas phage PhiCHU, complete genome) position: , mismatch: 7, identity: 0.759

gcattttagccttgacacgccaagcctaa	CRISPR spacer
ttagcgtagccttgacaagccaagcccaa	Protospacer
 .* . *********** ********.**

53. spacer 2.7|1597329|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to AP014435 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S41-C155, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 7, identity: 0.767

catgaaaaaattccttcttaaagtaattct	CRISPR spacer
gtggaaaaaatactttcttaaagtaatcca	Protospacer
   ******** *.*************.*

54. spacer 2.7|1597329|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to AP013443 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C22C-MedDCM-OCT-S23-C7) position: , mismatch: 7, identity: 0.767

catgaaaaaattccttcttaaagtaattct	CRISPR spacer
gtggaaaaaatactttcttaaagtaatcca	Protospacer
   ******** *.*************.*

55. spacer 2.7|1597329|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to AP013725 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22C-MedDCM-OCT-S35-C275, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.767

catgaaaaaattccttcttaaagtaattct	CRISPR spacer
gtggaaaaaatactttcttaaagtaatcca	Protospacer
   ******** *.*************.*

56. spacer 2.7|1597329|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to AP014433 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S41-C103, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces) position: , mismatch: 7, identity: 0.767

catgaaaaaattccttcttaaagtaattct	CRISPR spacer
gtggaaaaaatactttcttaaagtaatcca	Protospacer
   ******** *.*************.*

57. spacer 2.7|1597329|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to AP014428 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C22-MedDCM-OCT-S29-C101, *** SEQUENCING IN PROGRESS ***, 7 ordered pieces) position: , mismatch: 7, identity: 0.767

catgaaaaaattccttcttaaagtaattct	CRISPR spacer
gtggaaaaaatactttcttaaagtaatcca	Protospacer
   ******** *.*************.*

58. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016361 (Bacillus cereus strain M13 plasmid pBCM1301, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

59. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024121 (Bacillus cytotoxicus strain CH_1 plasmid pCh1_53, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

60. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024114 (Bacillus cytotoxicus strain CH_3 plasmid pCh3_53, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

61. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014868 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK4, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

62. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_020392 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-63, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

63. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024102 (Bacillus cytotoxicus strain CH_25 plasmid pCh25_53, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

64. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004873 (Bacillus thuringiensis serovar kurstaki str. HD-1 plasmid pBMB65, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

65. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024099 (Bacillus cytotoxicus strain CH_38 plasmid pCh38_53, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

66. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047088 (Bacillus paranthracis strain BC307 plasmid pCE3, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

67. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007613 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB69, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

68. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004862 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB53, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

69. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024105 (Bacillus cytotoxicus strain CH_23 plasmid pCh23_53, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

70. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024117 (Bacillus cytotoxicus strain CH_2 plasmid pCh2_53, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

71. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010094 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB55, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

72. spacer 2.8|1597395|29|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_020249 (Bacillus thuringiensis serovar kurstaki str. HD73 plasmid pHT73, complete sequence) position: , mismatch: 7, identity: 0.759

atggtgtacttccatccatagtctgtcca	CRISPR spacer
ctaaactacttccattcatagtttgtcca	Protospacer
 *..  *********.******.******

73. spacer 2.10|1597525|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_022875 (Bacillus thuringiensis YBT-1518 plasmid pBMB0230, complete sequence) position: , mismatch: 7, identity: 0.767

aagaacaaatctatcaaaggaagatattct----	CRISPR spacer
aagaagaaatctttcaaaggaag----tttagaa	Protospacer
***** ****** **********    *.*

74. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to MH355583 (Enterococcus phage vB_EfaS_LM99, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

75. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to MT857001 (Enterococcus phage EFA1, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

76. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to KT932701 (Enterococcus phage vB_EfaS_IME196, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

77. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to MH203383 (Ecterococcus phage vB_EfaS_AL3, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

78. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_015270 (Enterococcus phage EFRM31, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

79. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to MK721200 (Enterococcus phage vB_EfaS_Ef5.3, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

80. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_042022 (Enterococcus phage phiSHEF4, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

81. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_042021 (Enterococcus phage phiSHEF2, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

82. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to JX193904 (Enterococcus phage EfaCPT1, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

83. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_042126 (Enterococcus phage vB_EfaS_AL3, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

84. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to KX284704 (Enterococcus phage SANTOR1, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

85. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to KJ127304 (Enterococcus phage AUEF3, partial genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

86. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to MH375074 (Enterococcus phage LY0323, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

87. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_042127 (Enterococcus phage vB_EfaS_AL2, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

88. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to MH193369 (Enterococcus phage LY0322, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

89. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_031260 (Enterococcus phage Ec-ZZ2, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

90. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to KF733017 (Enterococcus phage IME-EF4, complete genome) position: , mismatch: 7, identity: 0.767

caggactaacaagagcattacaacagcaag	CRISPR spacer
taccagcaacaagcgcattacaacaacaag	Protospacer
.*  * .****** ***********.****

91. spacer 2.18|1598051|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018173 (Calothrix sp. NIES-2098 plasmid plasmid1 DNA, complete genome) position: , mismatch: 7, identity: 0.767

aaaaatgtttctgattgcaaaagcagatta	CRISPR spacer
ttacacctttctgatttgaaaagcagatta	Protospacer
  * *. *********  ************

92. spacer 2.20|1598183|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP031267 (Staphylococcus warneri strain 16A plasmid unnamed3) position: , mismatch: 7, identity: 0.759

aggcaaaaagcatatatggaaacacatag	CRISPR spacer
cgagaaaaagaatatattgaaacacatcc	Protospacer
 *. ****** ****** *********

93. spacer 2.20|1598183|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP017464 (Staphylococcus pasteuri strain JS7 plasmid pSNJS701, complete sequence) position: , mismatch: 7, identity: 0.759

aggcaaaaagcatatatggaaacacatag	CRISPR spacer
cgagaaaaagaatatattgaaacacatcc	Protospacer
 *. ****** ****** *********

94. spacer 2.20|1598183|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP031281 (Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

aggcaaaaagcatatatggaaacacatag	CRISPR spacer
cgagaaaaagaatatattgaaacacatcc	Protospacer
 *. ****** ****** *********

95. spacer 2.20|1598183|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP031281 (Staphylococcus pasteuri strain 3C plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

aggcaaaaagcatatatggaaacacatag	CRISPR spacer
cgagaaaaagaatatattgaaacacatcc	Protospacer
 *. ****** ****** *********

96. spacer 2.20|1598183|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP053471 (Staphylococcus warneri strain WB224 plasmid pWB224_1, complete sequence) position: , mismatch: 7, identity: 0.759

aggcaaaaagcatatatggaaacacatag	CRISPR spacer
cgagaaaaagaatatattgaaacacatcc	Protospacer
 *. ****** ****** *********

97. spacer 2.24|1598444|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to CP024687 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence) position: , mismatch: 7, identity: 0.767

cgaactgatagacagtggaactgttagaga	CRISPR spacer
acaagaaattgacagtagaactgttagaga	Protospacer
  **  .** ******.*************

98. spacer 2.25|1598510|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NC_014030 (Salinibacter ruber M8 plasmid pSR61, complete sequence) position: , mismatch: 7, identity: 0.767

gtaaaggcggtgttggctaatgagcgatag	CRISPR spacer
gaaaagggggtgttggcaaatgagcctcac	Protospacer
* ***** ********* *******  .*

99. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MF399199 (Acinetobacter baumannii strain D46 plasmid pD46-4, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

100. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040051 (Acinetobacter baumannii strain VB16141 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

101. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK531540 (Acinetobacter baumannii strain MC75 plasmid pMC75.1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

102. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039024 (Acinetobacter baumannii ATCC 17978 substr. PMR-High plasmid unnamed1) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacatata	Protospacer
  ********** **********.   **

103. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014650 (Acinetobacter baumannii strain IOMTU433 plasmid pIOMTU433, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

104. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012007 (Acinetobacter baumannii strain Ab04-mff plasmid pAB04-1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

105. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
tcaactaaaaaattctaatgaaagcatta	Protospacer
.  * .*** ************* *****

106. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to CP035932 (Acinetobacter baumannii strain VB31459 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

107. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to CP035932 (Acinetobacter baumannii strain VB31459 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

108. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK531536 (Acinetobacter baumannii strain MC1 plasmid pMC1.1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

109. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027531 (Acinetobacter baumannii strain AR_0088 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

110. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050416 (Acinetobacter baumannii strain PM193665 plasmid pPM193665_1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

111. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015485 (Acinetobacter baumannii strain ORAB01 plasmid pORAB01-2, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

112. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050426 (Acinetobacter baumannii strain PM194188 plasmid pPM194122_1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

113. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to CP040054 (Acinetobacter baumannii strain VB35179 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

114. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050433 (Acinetobacter baumannii strain PM194229 plasmid pPM194229_1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

115. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050386 (Acinetobacter baumannii strain VB82 plasmid pVB82_1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

116. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to LT605060 (Acinetobacter calcoaceticus strain NCTC7364 genome assembly, plasmid: 2) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

117. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KU744946 (Acinetobacter baumannii strain A297 (RUH875) plasmid pA297-3 clone Global clone 1 (GC1), complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

118. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020596 (Acinetobacter baumannii strain HWBA8 plasmid pHWBA8_1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

119. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040260 (Acinetobacter baumannii strain P7774 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

120. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KT779035 (Acinetobacter baumannii strain D4 plasmid pD4, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

121. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022285 (Acinetobacter baumannii strain 7804 plasmid pAba7804b, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

122. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MK323043 (Acinetobacter baumannii strain Acb-45063 plasmid pAb45063_b, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
gttagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

123. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012005 (Acinetobacter baumannii strain ATCC 17978-mff plasmid pAB3, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

124. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to CP033562 (Acinetobacter nosocomialis strain 2010S01-197 plasmid p2010S01-197-1, complete sequence) position: , mismatch: 7, identity: 0.759

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
attagcaaataaatctaatgaaacaatat	Protospacer
  ********** **********. **

125. spacer 2.29|1598774|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 7, identity: 0.767

gagcttcggtgcttttgtgggtggatttgg	CRISPR spacer
gagcttcggtgcgtttgtgggcgcgttcat	Protospacer
************ ********.* .**..

126. spacer 2.36|1599236|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015630 (Borrelia turicatae strain BTE5EL plasmid lp159) position: , mismatch: 7, identity: 0.767

ggatgtaatgactcactcgtcaacctatct	CRISPR spacer
tcaactaataactcactcatcaacctatca	Protospacer
  *  ****.********.**********

127. spacer 2.36|1599236|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MT711976 (Streptomyces phage Coruscant, complete genome) position: , mismatch: 7, identity: 0.767

ggatgtaatgactcactcgtcaacctatct	CRISPR spacer
gagtgtaatgagtcactcttcaacctacga	Protospacer
*..******** ****** ********.

128. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_AP017460 (Candidatus Endomicrobium trichonymphae strain Rs-D1 plasmid pRSTT1, complete sequence) position: , mismatch: 7, identity: 0.759

tttttttattttaatgtacataaaactat	CRISPR spacer
tttatttattttaatgtacacaaccttta	Protospacer
*** ****************.**  .*

129. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NZ_CP013044 (Clostridium perfringens strain JP55 plasmid pJFP55J, complete sequence) position: , mismatch: 7, identity: 0.759

tttttttattttaatgtacataaaactat	CRISPR spacer
cctttctattttaatgtacataatcagat	Protospacer
..***.*****************    **

130. spacer 3.5|2353149|33|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MN234234 (Arthrobacter phage Lymara, complete genome) position: , mismatch: 7, identity: 0.788

acataacgccggaacagtgggaacagctaaaga	CRISPR spacer
gcccaacgccggaacagtgggaccagctacggg	Protospacer
.* .****************** ****** .*.

131. spacer 2.2|1597000|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to MK448873 (Streptococcus phage Javan202, complete genome) position: , mismatch: 8, identity: 0.733

gagcaacaatggagaaaataccacgaatgg	CRISPR spacer
gtttctaaatggagaaactacaacgaatgg	Protospacer
*  .   ********** *** ********

132. spacer 2.3|1597066|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043762 (Paenibacillus sp. 37 plasmid pART37, complete sequence) position: , mismatch: 8, identity: 0.733

atgaaatagacaagctaaaacaggaagtac	CRISPR spacer
tccaaataaacaagcaaaaacaggaatccc	Protospacer
 . *****.****** ********** . *

133. spacer 2.7|1597329|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 8, identity: 0.733

catgaaaaaattccttcttaaagtaattct	CRISPR spacer
catgaaaaaattcctccttaaaaagcctta	Protospacer
***************.******. . .*.

134. spacer 2.10|1597525|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_014389 (Butyrivibrio proteoclasticus B316 plasmid pCY360, complete sequence) position: , mismatch: 8, identity: 0.733

aagaacaaatctatcaaaggaagatattct	CRISPR spacer
cggaacaaatctttcaagggaagatagaga	Protospacer
 .********** ****.********

135. spacer 2.10|1597525|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to MN131137 (Aeromonas phage D6, complete genome) position: , mismatch: 8, identity: 0.733

aagaacaaatctatcaaaggaagatattct	CRISPR spacer
gagaacagatctatccaaggaagaacagca	Protospacer
.******.******* ********    *

136. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010104 (Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
tagagcatatcattctaatgaaatcaggc	Protospacer
.. **** ** ***************

137. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010104 (Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
tagagcatatcattctaatgaaatcaggc	Protospacer
.. **** ** ***************

138. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010104 (Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
tagagcatatcattctaatgaaatcaggc	Protospacer
.. **** ** ***************

139. spacer 2.28|1598709|29|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010104 (Francisella tularensis subsp. novicida strain DPG 3A-IS plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.724

cgtagcaaataattctaatgaaatcatta	CRISPR spacer
tagagcatatcattctaatgaaatcaggc	Protospacer
.. **** ** ***************

140. spacer 2.30|1598840|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042265 (Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.733

cgttttctccgtatgtgcccgggatacgtg	CRISPR spacer
atacctatccgaatgtgaccgggatacgtg	Protospacer
   ..* **** ***** ************

141. spacer 2.32|1598972|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046164 (Vibrio sp. THAF191c plasmid pTHAF191c_c, complete sequence) position: , mismatch: 8, identity: 0.733

attcatattgattaaagttatacgcctctt	CRISPR spacer
gtgtaaattgattagagttatacgcctaaa	Protospacer
.* .* ********.************

142. spacer 2.32|1598972|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046067 (Vibrio sp. THAF191d plasmid pTHAF191d_c, complete sequence) position: , mismatch: 8, identity: 0.733

attcatattgattaaagttatacgcctctt	CRISPR spacer
gtgtaaattgattagagttatacgcctaaa	Protospacer
.* .* ********.************

143. spacer 2.32|1598972|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045357 (Vibrio sp. THAF64 plasmid pTHAF64_b, complete sequence) position: , mismatch: 8, identity: 0.733

attcatattgattaaagttatacgcctctt	CRISPR spacer
gtgtaaattgattagagttatacgcctaaa	Protospacer
.* .* ********.************

144. spacer 2.32|1598972|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MN871444 (UNVERIFIED: Serratia phage KpGz_1, complete genome) position: , mismatch: 8, identity: 0.733

attcatattgattaaagttatacgcctctt	CRISPR spacer
gttggcgttgaataaagttatacgcctccg	Protospacer
.** ...**** ****************.

145. spacer 2.33|1599038|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK931297 (Escherichia phage vB_EcoP_3HA13, complete genome) position: , mismatch: 8, identity: 0.733

ataaacaatgaaattcagaatagtcgatgc	CRISPR spacer
tttaacaatgaaattcagaacagtaatggt	Protospacer
 * *****************.*** .  *.

146. spacer 2.33|1599038|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MH992123 (UNVERIFIED: Escherichia phage OLB145, complete genome) position: , mismatch: 8, identity: 0.733

ataaacaatgaaattcagaatagtcgatgc	CRISPR spacer
tttaacaatgaaattcagaacagtaatggt	Protospacer
 * *****************.*** .  *.

147. spacer 2.41|1599567|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 8, identity: 0.733

aagacaagttcactattgatgcagctaaca	CRISPR spacer
taaataagttcactattgatgctgctgttc	Protospacer
 *.*.***************** ***. .

148. spacer 2.41|1599567|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 8, identity: 0.733

aagacaagttcactattgatgcagctaaca	CRISPR spacer
taaataagttcactattgatgctgctgttc	Protospacer
 *.*.***************** ***. .

149. spacer 2.41|1599567|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 8, identity: 0.733

aagacaagttcactattgatgcagctaaca	CRISPR spacer
taaataagttcactattgatgctgctgttc	Protospacer
 *.*.***************** ***. .

150. spacer 2.41|1599567|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 8, identity: 0.733

aagacaagttcactattgatgcagctaaca	CRISPR spacer
taaataagttcactattgatgctgctgttc	Protospacer
 *.*.***************** ***. .

151. spacer 2.41|1599567|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 8, identity: 0.733

aagacaagttcactattgatgcagctaaca	CRISPR spacer
taaataagttcactattgatgctgctgttc	Protospacer
 *.*.***************** ***. .

152. spacer 2.41|1599567|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 8, identity: 0.733

aagacaagttcactattgatgcagctaaca	CRISPR spacer
taaataagttcactattgatgctgctgttc	Protospacer
 *.*.***************** ***. .

153. spacer 2.41|1599567|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 8, identity: 0.733

aagacaagttcactattgatgcagctaaca	CRISPR spacer
taaataagttcactattgatgctgctgttc	Protospacer
 *.*.***************** ***. .

154. spacer 2.41|1599567|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 8, identity: 0.733

aagacaagttcactattgatgcagctaaca	CRISPR spacer
taaataagttcactattgatgctgctgttc	Protospacer
 *.*.***************** ***. .

155. spacer 2.41|1599567|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 8, identity: 0.733

aagacaagttcactattgatgcagctaaca	CRISPR spacer
taaataagttcactattgatgctgctgttc	Protospacer
 *.*.***************** ***. .

156. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to NC_041877 (Pseudomonas phage SM1, complete genome) position: , mismatch: 8, identity: 0.724

tttttttattttaatgtacataaaactat	CRISPR spacer
gaaggtggttctaatgtacataaaactat	Protospacer
     * .**.******************

157. spacer 2.44|1599765|29|NC_012781|CRISPRCasFinder,CRT matches to JQ067090 (UNVERIFIED: Pseudomonas phage PaMx31, partial genome) position: , mismatch: 8, identity: 0.724

tttttttattttaatgtacataaaactat	CRISPR spacer
gaaggtggttctaatgtacataaaactat	Protospacer
     * .**.******************

158. spacer 3.5|2353149|33|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031599 (Roseovarius indicus strain DSM 26383 plasmid pRIdsm_01, complete sequence) position: , mismatch: 8, identity: 0.758

acataacgccggaacagtgggaacagctaaaga	CRISPR spacer
cgattccgccggaacagtggaaacagctgaacc	Protospacer
  **  **************.*******.**

159. spacer 2.13|1597723|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NC_042076 (Shigella phage Sf17, complete genome) position: , mismatch: 9, identity: 0.7

caggactaacaagagcattacaacagcaag	CRISPR spacer
caggactaacaagagcttaacaagtctgta	Protospacer
**************** * ****   .. .

160. spacer 2.29|1598774|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044976 (Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) plasmid pPBL-H3_B2-1, complete sequence) position: , mismatch: 9, identity: 0.7

gagcttcggtgcttttgtgggtggatttgg	CRISPR spacer
ctcattgggtgctcttgtgggtggattgtt	Protospacer
    ** ******.*************

161. spacer 2.32|1598972|30|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to MN850615 (Escherichia phage kvi, complete genome) position: , mismatch: 9, identity: 0.7

attcatattgattaaagttatacgcctctt	CRISPR spacer
attcatattgatcaaagttaaacattatag	Protospacer
************.******* **... .

162. spacer 3.10|2353477|34|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP021877 (Desulfosarcina ovata strain 28bB2T plasmid Do28_1, complete sequence) position: , mismatch: 9, identity: 0.735

actgatgaatggctgtatgatgaagaatatttga	CRISPR spacer
tcagatgaatggctgtacgatgaacaattggaaa	Protospacer
 * **************.****** ***    .*

163. spacer 2.3|1597066|30|NC_012781|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018204 (Leptolyngbya boryana NIES-2135 plasmid plasmid1 DNA, complete genome) position: , mismatch: 10, identity: 0.667

atgaaatagacaagctaaaacaggaagtac	CRISPR spacer
caaccgtagagaagctaaaacaggaagggg	Protospacer
  .  .**** **************** .

164. spacer 3.2|2352950|34|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019438 (Thioclava nitratireducens strain 25B10_4 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

catattacacaatcgttcgtattcaggttcttca	CRISPR spacer
gggattacacgaccgttcgtattcaggccgctga	Protospacer
 . *******.*.**************.. .* *

165. spacer 3.2|2352950|34|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 10, identity: 0.706

catattacacaatcgttcgtattcaggttcttca	CRISPR spacer
cggagccggcaatcgttcgtctccaggttcttct	Protospacer
*. * .  .*********** *.**********

166. spacer 3.19|2354071|34|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.647

gctgttgagtttttccaagttcgacagagcgaga	CRISPR spacer
cagcttgagttcttccaggttcgacagattcccg	Protospacer
    *******.*****.********** .   .

167. spacer 3.19|2354071|34|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.647

gctgttgagtttttccaagttcgacagagcgaga	CRISPR spacer
cagcttgagttcttccaggttcgacagattcccg	Protospacer
    *******.*****.********** .   .

168. spacer 3.19|2354071|34|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.647

gctgttgagtttttccaagttcgacagagcgaga	CRISPR spacer
cagcttgagttcttccaggttcgacagattcccg	Protospacer
    *******.*****.********** .   .

169. spacer 3.19|2354071|34|NC_012781|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 12, identity: 0.647

gctgttgagtttttccaagttcgacagagcgaga	CRISPR spacer
cagcttgagttcttccaggttcgacagattcccg	Protospacer
    *******.*****.********** .   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

560563 : 571012

Clostridium_phage(50.0%)

integrase

attL 569329:569343|attR 575160:575174

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012741521.1\|560563_563146_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	8.0e-100	33.6
WP_012741522.1\|563167_564334_+	glycoside hydrolase family 5 protein	NA	NA	NA	NA
WP_022292793.1\|564464_564737_-	sporulation transcriptional regulator SpoIIID	M9Q261	Clostridium_phage	1.2e-14	47.5
WP_041253857.1\|564950_565538_-	cytidylate kinase-like family protein	NA	NA	NA	NA
WP_012741526.1\|565818_567393_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.8e-25	33.9
WP_041253859.1\|567419_569090_-	hypothetical protein	NA	NA	NA	NA
WP_012741528.1\|569103_569547_-	helix-turn-helix transcriptional regulator	B3GVX0	Streptococcus_phage	9.7e-06	43.6
569329:569343	attL	NA	NA	NA	NA
WP_003019365.1\|569723_569912_+	hypothetical protein	A0A0A8WI91	Clostridium_phage	2.6e-05	47.1
WP_012741529.1\|569926_571012_+\|integrase	site-specific integrase	A0A0A8WF08	Clostridium_phage	3.6e-86	48.2
575160:575174	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1143923 : 1186076

Streptococcus_phage(16.67%)

terminase,tail,capsid,integrase,portal,tRNA

attL 1176031:1176045|attR 1192711:1192725

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012742105.1\|1143923_1144862_-\|tRNA	tRNA-dihydrouridine synthase family protein	NA	NA	NA	NA
WP_012742107.1\|1145295_1146144_+	thymidylate synthase	A0A0H3V0R8	Geobacillus_virus	1.1e-61	45.0
WP_012742108.1\|1146227_1146719_+	dihydrofolate reductase	A0A076GDN3	Bacillus_phage	8.7e-24	44.2
WP_012742109.1\|1146750_1148472_+	biosynthetic-type acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	9.8e-62	34.1
WP_041254511.1\|1148499_1148997_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_012742112.1\|1149348_1149855_-	flavin reductase family protein	NA	NA	NA	NA
WP_012742114.1\|1151224_1152715_-	recombinase family protein	A0A0A7RTP8	Clostridium_phage	2.8e-49	33.6
WP_012742115.1\|1152877_1153936_-	Abi family protein	A0A1S5S8T0	Streptococcus_phage	1.4e-13	25.6
WP_012742116.1\|1154322_1154973_-	hypothetical protein	NA	NA	NA	NA
WP_012742117.1\|1154984_1155626_-	helix-turn-helix domain-containing protein	A0A1B2APZ3	Phage_Wrath	8.7e-32	37.1
WP_041254516.1\|1155817_1155970_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012742119.1\|1156012_1156282_+	hypothetical protein	NA	NA	NA	NA
WP_167527323.1\|1156415_1156571_-	hypothetical protein	NA	NA	NA	NA
WP_012742122.1\|1156688_1156886_+	hypothetical protein	NA	NA	NA	NA
WP_012742123.1\|1156880_1157423_-	hypothetical protein	NA	NA	NA	NA
WP_012742124.1\|1157540_1157774_+	hypothetical protein	NA	NA	NA	NA
WP_012742126.1\|1158210_1158537_+	hypothetical protein	NA	NA	NA	NA
WP_012742127.1\|1158626_1159484_+	hypothetical protein	NA	NA	NA	NA
WP_012742128.1\|1159470_1159926_+	ribonuclease H	NA	NA	NA	NA
WP_167527324.1\|1159861_1161403_+	ParB N-terminal domain-containing protein	A0A2K9V477	Faecalibacterium_phage	1.7e-44	29.1
WP_012742130.1\|1161411_1161642_+	hypothetical protein	NA	NA	NA	NA
WP_012742131.1\|1161642_1161999_+	hypothetical protein	NA	NA	NA	NA
WP_012742132.1\|1161991_1162306_+	hypothetical protein	NA	NA	NA	NA
WP_012742133.1\|1162296_1162890_+	hypothetical protein	NA	NA	NA	NA
WP_012742137.1\|1163422_1163605_+	hypothetical protein	NA	NA	NA	NA
WP_012742139.1\|1163850_1164483_+	DUF4417 domain-containing protein	H7BVQ9	unidentified_phage	1.1e-66	56.2
WP_148207826.1\|1164482_1164758_+	ETC complex I subunit	NA	NA	NA	NA
WP_012742141.1\|1164770_1165319_+	hypothetical protein	NA	NA	NA	NA
WP_012742142.1\|1165348_1166200_+\|terminase	terminase small subunit	V5URT8	Oenococcus_phage	8.3e-22	33.2
WP_167527325.1\|1166174_1167506_+\|terminase	PBSX family phage terminase large subunit	A0A1J1J8Z1	Escherichia_phage	5.8e-70	35.3
WP_012742144.1\|1167517_1168900_+\|portal	phage portal protein	NA	NA	NA	NA
WP_012742145.1\|1168910_1170485_+\|capsid	phage minor capsid protein	F6K8Q8	Clostridium_phage	1.8e-46	32.1
WP_012742146.1\|1170474_1170693_+	hypothetical protein	NA	NA	NA	NA
WP_167527326.1\|1170751_1170907_+	hypothetical protein	NA	NA	NA	NA
WP_012742148.1\|1171003_1171156_+	hypothetical protein	NA	NA	NA	NA
WP_012742149.1\|1171332_1171926_+	phage scaffolding protein	NA	NA	NA	NA
WP_012742150.1\|1171938_1172934_+	hypothetical protein	A0A1J0MC78	Streptomyces_phage	2.2e-53	40.4
WP_012742151.1\|1172952_1173288_+	hypothetical protein	NA	NA	NA	NA
WP_012742152.1\|1173287_1173719_+	hypothetical protein	NA	NA	NA	NA
WP_049757226.1\|1173718_1174087_+	hypothetical protein	A0A2K9V3E3	Faecalibacterium_phage	8.0e-06	33.3
WP_041253968.1\|1174061_1174508_+	hypothetical protein	NA	NA	NA	NA
WP_012742155.1\|1174512_1175001_+	hypothetical protein	NA	NA	NA	NA
WP_012742156.1\|1175018_1175417_+	hypothetical protein	NA	NA	NA	NA
WP_012742157.1\|1175409_1175973_+	hypothetical protein	A0A1S5SAD5	Streptococcus_phage	1.4e-09	33.3
WP_012742158.1\|1176019_1178470_+	hypothetical protein	A0A1S5S8Z7	Streptococcus_phage	2.8e-62	53.3
1176031:1176045	attL	NA	NA	NA	NA
WP_012742159.1\|1178479_1179202_+	hypothetical protein	NA	NA	NA	NA
WP_012742160.1\|1179198_1181241_+\|tail	phage tail protein	H7BV46	unidentified_phage	6.8e-86	36.2
WP_012742161.1\|1181244_1182843_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_012742162.1\|1183287_1184004_+	SGNH/GDSL hydrolase family protein	A0A2H4J709	uncultured_Caudovirales_phage	1.8e-14	27.8
WP_012742163.1\|1184287_1184569_+	hypothetical protein	NA	NA	NA	NA
WP_012742164.1\|1184725_1184869_+	hypothetical protein	NA	NA	NA	NA
WP_012742165.1\|1185080_1186076_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	4.4e-22	27.8
1192711:1192725	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1929483 : 1939707

Faecalibacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012742882.1\|1929483_1929906_-	single-stranded DNA-binding protein	A0A2H4J8K2	uncultured_Caudovirales_phage	1.1e-30	63.7
WP_012742883.1\|1929902_1930250_-	hypothetical protein	G9BWA1	Planktothrix_phage	2.5e-09	82.4
WP_012742884.1\|1930256_1930919_-	radical SAM protein	S4U737	Listeria_phage	1.1e-32	37.4
WP_012742885.1\|1930930_1931416_-	hypothetical protein	A0A1I9S5V4	Bacillus_phage	3.1e-13	44.0
WP_012742886.1\|1931408_1932458_-	phosphoadenosine phosphosulfate reductase family protein	F8UBB2	Clostridium_phage	6.4e-48	35.7
WP_012742887.1\|1932472_1932952_-	type II toxin-antitoxin system PemK/MazF family toxin	A0A2K9V2U7	Faecalibacterium_phage	6.1e-38	53.8
WP_012742888.1\|1932953_1934306_-	ParB/RepB/Spo0J family partition protein	A0A2K9V477	Faecalibacterium_phage	8.8e-42	37.8
WP_012742889.1\|1934399_1934654_-	hypothetical protein	NA	NA	NA	NA
WP_012742890.1\|1934659_1935355_-	hypothetical protein	Q9ZX04	Mycobacterium_phage	2.0e-05	31.8
WP_012742891.1\|1935344_1935578_-	hypothetical protein	NA	NA	NA	NA
WP_118096249.1\|1935765_1935996_-	alanine racemase	A0A2K9V2W2	Faecalibacterium_phage	6.3e-09	46.6
WP_012742894.1\|1935992_1936916_-	hypothetical protein	H7BV66	unidentified_phage	2.4e-75	51.8
WP_012742895.1\|1936915_1937245_-	DUF4313 domain-containing protein	NA	NA	NA	NA
WP_012742896.1\|1937246_1937681_-	hypothetical protein	NA	NA	NA	NA
WP_012742897.1\|1937694_1937973_-	hypothetical protein	NA	NA	NA	NA
WP_012742898.1\|1938054_1938333_-	hypothetical protein	NA	NA	NA	NA
WP_012742899.1\|1938435_1938645_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_012742900.1\|1938645_1939452_-	HNH endonuclease	M1PKJ5	Streptococcus_phage	8.7e-29	37.3
WP_012742901.1\|1939452_1939707_-	hypothetical protein	A0A2H4JB60	uncultured_Caudovirales_phage	1.2e-13	52.0

DBSCAN-SWA_4

1950659 : 2000012

Faecalibacterium_phage(34.62%)

tail,terminase,integrase,plate

attL 1956929:1956946|attR 2003255:2003272

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_148207831.1\|1950659_1952315_-	hypothetical protein	H7BV43	unidentified_phage	1.8e-145	65.2
WP_012742924.1\|1952356_1952584_-	hypothetical protein	NA	NA	NA	NA
WP_012742925.1\|1952603_1952999_-\|tail	phage tail protein	B6SBU8	Clostridium_virus	4.1e-32	54.0
WP_012742926.1\|1952995_1954267_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_012742927.1\|1954278_1955397_-\|plate	baseplate J/gp47 family protein	A0A0N7ACK1	Bacillus_phage	2.7e-36	29.6
WP_012742928.1\|1955411_1955849_-	DUF2634 domain-containing protein	A0A0A7RTH1	Clostridium_phage	5.6e-06	35.7
WP_012742929.1\|1955863_1956220_-	hypothetical protein	NA	NA	NA	NA
WP_012742930.1\|1956235_1957477_-	hypothetical protein	A0A0N6W8H4	Bacillus_phage	7.6e-16	29.3
1956929:1956946	attL	NA	NA	NA	NA
WP_012742931.1\|1957487_1958171_-	LysM peptidoglycan-binding domain-containing protein	B6SBU2	Clostridium_virus	2.2e-09	29.1
WP_049757234.1\|1958174_1962863_-\|tail	phage tail tape measure protein	A0A0A7S163	Clostridium_phage	9.1e-78	55.3
WP_012742934.1\|1963016_1963586_-	hypothetical protein	NA	NA	NA	NA
WP_012742935.1\|1963665_1964130_-	hypothetical protein	NA	NA	NA	NA
WP_012742936.1\|1964146_1965550_-\|tail	phage tail sheath subtilisin-like domain-containing protein	NA	NA	NA	NA
WP_012742937.1\|1965552_1965792_-	hypothetical protein	NA	NA	NA	NA
WP_012742938.1\|1965803_1966685_-	hypothetical protein	NA	NA	NA	NA
WP_012742939.1\|1966681_1966984_-	DUF5026 domain-containing protein	NA	NA	NA	NA
WP_118389617.1\|1966997_1967450_-	hypothetical protein	NA	NA	NA	NA
WP_012742941.1\|1967452_1967809_-	hypothetical protein	NA	NA	NA	NA
WP_012742942.1\|1967805_1968216_-	hypothetical protein	NA	NA	NA	NA
WP_012742943.1\|1968215_1968815_-	hypothetical protein	NA	NA	NA	NA
WP_012742944.1\|1968826_1969852_-	hypothetical protein	A0A1B0XTJ8	Freshwater_phage	1.9e-28	27.5
WP_012742945.1\|1969870_1970302_-	DUF2190 family protein	NA	NA	NA	NA
WP_012742946.1\|1970319_1971576_-	hypothetical protein	NA	NA	NA	NA
WP_012742947.1\|1971605_1971818_-	hypothetical protein	NA	NA	NA	NA
WP_012742948.1\|1971903_1972383_-	hypothetical protein	A0A0K1LML5	Caulobacter_phage	3.0e-05	27.9
WP_012742949.1\|1972387_1973344_-	hypothetical protein	NA	NA	NA	NA
WP_012742951.1\|1974754_1976203_-\|terminase	phage terminase large subunit	D4N436	Pseudomonas_phage	9.4e-74	34.4
WP_012742952.1\|1976202_1976664_-	hypothetical protein	A0A2K9V3J2	Faecalibacterium_phage	1.8e-26	46.3
WP_012742953.1\|1976671_1977595_-	ParB N-terminal domain-containing protein	A0A2K9V3J4	Faecalibacterium_phage	2.0e-98	60.8
WP_012742954.1\|1977543_1978962_-	hypothetical protein	A0A2K9V3N2	Faecalibacterium_phage	1.0e-157	57.4
WP_012742955.1\|1979235_1979751_-	hypothetical protein	A0A2K9V3G3	Faecalibacterium_phage	3.6e-20	46.7
WP_012742956.1\|1980030_1980627_-	hypothetical protein	NA	NA	NA	NA
WP_041254095.1\|1980716_1980974_-	hypothetical protein	NA	NA	NA	NA
WP_041254097.1\|1981020_1981227_-	hypothetical protein	NA	NA	NA	NA
WP_012742959.1\|1981278_1981584_-	hypothetical protein	NA	NA	NA	NA
WP_012742960.1\|1981589_1981814_-	hypothetical protein	NA	NA	NA	NA
WP_041254607.1\|1981823_1982126_-	hypothetical protein	NA	NA	NA	NA
WP_012742962.1\|1982137_1982806_-	hypothetical protein	NA	NA	NA	NA
WP_012742963.1\|1982805_1983930_-	DUF1351 domain-containing protein	A0A0P0IV40	Lactobacillus_phage	5.5e-05	27.5
WP_041254609.1\|1983940_1984378_-	RusA family crossover junction endodeoxyribonuclease	A0A2K9V3I2	Faecalibacterium_phage	9.2e-33	51.4
WP_012742965.1\|1984400_1984670_-	hypothetical protein	NA	NA	NA	NA
WP_012742966.1\|1984674_1985529_-	ATP-binding protein	A0A2K9V3L7	Faecalibacterium_phage	6.8e-64	46.3
WP_012742967.1\|1985531_1986311_-	phage replisome organizer N-terminal domain-containing protein	C9WB95	Streptococcus_virus	7.8e-43	64.6
WP_012742968.1\|1986330_1987128_-	PD-(D/E)XK nuclease-like domain-containing protein	H7BV60	unidentified_phage	2.6e-94	63.6
WP_012742969.1\|1987139_1988048_-	recombinase RecT	A0A0A7RUP3	Clostridium_phage	7.5e-45	39.5
WP_041254099.1\|1988049_1988280_-	hypothetical protein	NA	NA	NA	NA
WP_012742971.1\|1988258_1988513_-	hypothetical protein	NA	NA	NA	NA
WP_049757235.1\|1988448_1988748_-	hypothetical protein	NA	NA	NA	NA
WP_012742973.1\|1988762_1989329_-	cell wall hydrolase	A0A0K2FM09	Brevibacillus_phage	9.2e-09	29.0
WP_012742974.1\|1989401_1989896_-	helix-turn-helix domain-containing protein	A0A2K9V3J3	Faecalibacterium_phage	6.3e-38	50.6
WP_012742975.1\|1989924_1990341_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012742976.1\|1990582_1990948_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012742978.1\|1990989_1991283_+	hypothetical protein	NA	NA	NA	NA
WP_012742979.1\|1991272_1991599_+	helix-turn-helix domain-containing protein	Q0H244	Geobacillus_phage	6.4e-07	40.9
WP_012742980.1\|1991576_1992152_+	hypothetical protein	A0A2K9V3H4	Faecalibacterium_phage	1.5e-30	41.8
WP_012742981.1\|1992138_1993269_+\|integrase	tyrosine-type recombinase/integrase	A0A2K9V349	Faecalibacterium_phage	1.0e-75	40.3
WP_012742982.1\|1993497_1994508_-	GGGtGRT protein	NA	NA	NA	NA
WP_012742983.1\|1994526_1995228_-	iron-sulfur cluster assembly scaffold protein	NA	NA	NA	NA
WP_012742984.1\|1995350_1996025_-	UDP-N-acetylglucosamine pyrophosphorylase	NA	NA	NA	NA
WP_012742985.1\|1996190_2000012_-	topoisomerase C-terminal repeat-containing protein	A0A2K9L1Q2	Tupanvirus	8.4e-21	23.7
2003255:2003272	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2980306 : 2986731

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012743879.1\|2980306_2981020_-	CpsD/CapB family tyrosine-protein kinase	A0A1X9I5D6	Streptococcus_phage	1.5e-32	36.4
WP_041254261.1\|2981046_2981820_-	capsular biosynthesis protein	A0A1X9I5E1	Streptococcus_phage	2.2e-21	30.5
WP_049757242.1\|2981844_2982546_-	hypothetical protein	NA	NA	NA	NA
WP_012743884.1\|2983028_2983493_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.5e-45	59.7
WP_012743885.1\|2983523_2984720_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.1e-109	50.3
WP_012743886.1\|2984826_2985546_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.3e-39	42.7
WP_041254265.1\|2985564_2986731_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.3e-45	34.6

DBSCAN-SWA_6

3144684 : 3191797

Clostridium_phage(30.0%)

integrase,transposase

attL 3174174:3174197|attR 3195405:3195428

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012744067.1\|3144684_3145863_+\|transposase	IS110 family transposase	M1NSC9	Streptococcus_phage	2.0e-29	30.4
WP_012744068.1\|3145907_3146147_-	hypothetical protein	NA	NA	NA	NA
WP_012744070.1\|3147183_3147543_-	hypothetical protein	NA	NA	NA	NA
WP_012744072.1\|3149739_3149913_-	DUF4176 domain-containing protein	NA	NA	NA	NA
WP_041254287.1\|3150203_3151379_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_012744078.1\|3152110_3152296_-	hypothetical protein	NA	NA	NA	NA
WP_012744079.1\|3152288_3152798_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_012744082.1\|3153461_3153704_-	hypothetical protein	NA	NA	NA	NA
WP_012744083.1\|3153996_3154284_-	hypothetical protein	NA	NA	NA	NA
WP_012741734.1\|3156114_3156414_-	hypothetical protein	NA	NA	NA	NA
WP_012744085.1\|3156439_3156883_-	DUF5082 domain-containing protein	NA	NA	NA	NA
WP_012741732.1\|3156884_3157211_-	DUF4176 domain-containing protein	A0A1X9I6T6	Streptococcus_phage	9.0e-09	39.7
WP_012744088.1\|3158050_3158458_-	hypothetical protein	NA	NA	NA	NA
WP_012744089.1\|3158622_3159921_+	polysaccharide biosynthesis C-terminal domain-containing protein	NA	NA	NA	NA
WP_022293545.1\|3160028_3161615_+	hydroxylamine reductase	NA	NA	NA	NA
WP_012744091.1\|3161743_3162634_-	N-carbamoylputrescine amidase	M1H5W0	Paramecium_bursaria_Chlorella_virus	7.3e-77	48.2
WP_012744092.1\|3162645_3163776_-	agmatine deiminase	M1HES8	Acanthocystis_turfacea_Chlorella_virus	2.4e-93	45.4
WP_022293547.1\|3163747_3164899_-	carboxynorspermidine decarboxylase	NA	NA	NA	NA
WP_012744094.1\|3164912_3166208_-	saccharopine dehydrogenase family protein	NA	NA	NA	NA
WP_012744095.1\|3166259_3167117_-	polyamine aminopropyltransferase	A0A1C9C533	Heterosigma_akashiwo_virus	2.1e-17	30.1
WP_012744096.1\|3167132_3168584_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_012744097.1\|3168717_3169212_-	DUF3368 domain-containing protein	NA	NA	NA	NA
WP_012744098.1\|3169208_3169499_-	hypothetical protein	NA	NA	NA	NA
WP_012744101.1\|3169912_3171238_-	MATE family efflux transporter	NA	NA	NA	NA
WP_012744102.1\|3171442_3171838_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_012744103.1\|3172103_3172952_-	DegV family protein	NA	NA	NA	NA
3174174:3174197	attL	NA	NA	NA	NA
WP_012744107.1\|3174476_3176168_-	AAA family ATPase	NA	NA	NA	NA
WP_012744109.1\|3176731_3177175_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_012744113.1\|3178451_3179018_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012744114.1\|3179180_3179897_-	AAA family ATPase	NA	NA	NA	NA
WP_012744115.1\|3179889_3180969_-	DUF1016 family protein	Q9JMP5	Wolbachia_phage	4.7e-70	37.1
WP_012740995.1\|3181359_3182208_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.4e-23	28.6
WP_012740994.1\|3182200_3183352_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_012744117.1\|3183758_3185057_-\|integrase	site-specific integrase	A0A0A8WIF9	Clostridium_phage	4.8e-45	29.2
WP_005604344.1\|3185141_3185762_-	helix-turn-helix transcriptional regulator	A0A0A7RTR3	Clostridium_phage	6.1e-06	36.5
WP_005604346.1\|3185937_3186168_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005604349.1\|3188131_3188818_-	SdpI family protein	NA	NA	NA	NA
WP_005604351.1\|3188814_3189084_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_005604353.1\|3189341_3189581_-	hypothetical protein	NA	NA	NA	NA
WP_008400128.1\|3189876_3190653_-	hypothetical protein	NA	NA	NA	NA
WP_012742056.1\|3190948_3191797_+\|integrase	site-specific integrase	A0A090EUH1	Clostridium_phage	4.1e-05	24.4
3195405:3195428	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_012781

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection