CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011060	Pelodictyon phaeoclathratiforme BU-1, complete sequence	7 crisprs	cas3,RT,PrimPol,WYL,PD-DExK,csa3,cas3HD,cas5,cas8c,cas7b,cas4,cas1,cas2,DEDDh,cas6,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx23,csx15	0	19	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011060_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011060_1

600883-600955

Orphan

Consensus_repeat	Method
TACACGGAGTCAACAACGTCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011060_1

>merge|NC_011060|1|600883-600955|CRISPRCasFinder
TACACGGAGTCAACAACGTCCCCCTTTTCGTCCCCCTTTTTTTGAGGAAGTACACGGAATCAACAACGTCCCC

>NC_011060|1|1|600883-600955|CRISPRCasFinder
TACACGGAGTCAACAACGTCCCC	CTTTTCGTCCCCCTTTTTTTGAGGAAG
TACACGGAATCAACAACGTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011060.1\|WP_012507411.1\|590659_591166_-\|transposase	unknown	unknown	gnl\|CDD\|315923
NC_011060.1\|WP_012507429.1\|634424_637475_+\|peptidase-domain-containing-ABC-transporter	unknown	unknown	gnl\|CDD\|225183
NC_011060.1\|WP_012507422.1\|601744_602998_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NC_011060.1\|WP_012507430.1\|637471_638461_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_011060.1\|WP_012507425.1\|609054_609936_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224005
NC_011060.1\|WP_190274055.1\|596093_596246_+\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012507412.1\|591470_592373_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_011060.1\|WP_012507420.1\|600028_600775_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NC_011060.1\|WP_012507418.1\|596938_598237_+\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|185104
NC_011060.1\|WP_012507423.1\|603067_605908_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NC_011060.1\|WP_041526405.1\|632174_633596_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NC_011060.1\|WP_041526653.1\|592580_593528_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|372314
NC_011060.1\|WP_012507410.1\|589666_590449_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown
NC_011060.1\|WP_012507416.1\|594003_594195_+\|addiction-module-protein	unknown	unknown	gnl\|CDD\|378247
NC_011060.1\|WP_012507421.1\|601034_601625_+\|UpxY-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|193582
NC_011060.1\|WP_012507424.1\|606153_608904_-\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NC_011060.1\|WP_012507414.1\|593559_593835_+\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012507426.1\|610440_632142_+\|outer-membrane-adhesin-like-protein	unknown	unknown	gnl\|CDD\|132699
NC_011060.1\|WP_012507428.1\|633654_634368_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|376360
NC_011060.1\|WP_041526404.1\|596401_596827_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011060.1\|WP_012507411.1\|590659_591166_-\|transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.17119e-21
NC_011060.1\|WP_012507429.1\|634424_637475_+\|peptidase-domain-containing-ABC-transporter	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
NC_011060.1\|WP_012507425.1\|609054_609936_+\|ABC-transporter-permease	gnl\|CDD\|224005	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only].	4.10397e-83
NC_011060.1\|WP_041526653.1\|592580_593528_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	1.48884e-28
NC_011060.1\|WP_012507420.1\|600028_600775_+\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	5.61149e-32
NC_011060.1\|WP_012507418.1\|596938_598237_+\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|185104	PRK15182, PRK15182, Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB.	0
NC_011060.1\|WP_012507423.1\|603067_605908_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NC_011060.1\|WP_041526405.1\|632174_633596_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.06178e-67
NC_011060.1\|WP_012507412.1\|591470_592373_+\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|372314	pfam12784, PDDEXK_2, PD-(D/E)XK nuclease family transposase. Members of this family belong to the PD-(D/E)XK nuclease superfamily. These proteins are transposase proteins.	9.94797e-83
NC_011060.1\|WP_012507430.1\|637471_638461_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	2.86201e-24
NC_011060.1\|WP_012507416.1\|594003_594195_+\|addiction-module-protein	gnl\|CDD\|378247	pfam09720, Unstab_antitox, Putative addiction module component. This entry defines several short bacterial proteins, typically about 75 amino acids long, which are always found as part of a pair (at least) of small genes. The other protein in the pair always belongs to a family of plasmid stabilisation proteins (IPR007712). It is likely that this protein and its partner comprise some form of addiction module - a pair of genes consisting of a stable toxin and an unstable antitoxin which mediate programmed cell death - although these gene-pairs are usually found on the bacterial main chromosome.	6.38948e-08
NC_011060.1\|WP_012507421.1\|601034_601625_+\|UpxY-family-transcription-antiterminator	gnl\|CDD\|193582	cd09893, NGN_SP_TaA, N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), TaA. The N-Utilization Substance G (NusG) protein is involved in transcription elongation and termination. NusG is essential in Escherichia coli and is associated with RNA polymerase elongation and Rho-termination in bacteria. Paralogs of eubacterial NusG, NusG SP (Specialized Paralog of NusG), are more diverse and often found as the first ORF in operons encoding secreted proteins and LPS biosynthesis genes. NusG SP family members are operon-specific transcriptional antiterminationn factors. TaA is a NusG SP factor that is required for synthesis of a polyketide antibiotic TA in Myxococcus xanthus. Orthologs of the NusG gene exist in all bacteria, but its functions and requirements are different. The NusG N-terminal (NGN) domain is quite similar in all NusG orthologs, but its C-terminal domains and the linker that separate these two domains are different. The domain organization of NusG and its orthologs suggest that the common properties of NusG and its orthologs and paralogs are due to their similar NGN domains.	8.36244e-27
NC_011060.1\|WP_012507424.1\|606153_608904_-\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NC_011060.1\|WP_012507426.1\|610440_632142_+\|outer-membrane-adhesin-like-protein	gnl\|CDD\|132699	TIGR03660, T1SS_rpt_143, T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion. [Cellular processes, Pathogenesis].	5.32804e-17
NC_011060.1\|WP_012507428.1\|633654_634368_+\|peptidylprolyl-isomerase	gnl\|CDD\|376360	pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline.	1.10204e-06
NC_011060.1\|WP_012507422.1\|601744_602998_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.14426e-29

>NC_011060.1|WP_012507420.1|600028_600775_+|YdcF-family-protein
MINKILPLLVLPSGFSLLCLLAGLLLRNSFFLWLGTLLLLAFSMPVMSDFLMRSVEVGEGRVPVSSVGKADAIVVLSGMIVTVDGAPLGEWGGAVDRFDGGVELFKAGRAPVVVFTRGQVPWQPGVVPEGELLAKRALLLGVPQSAIRLTGKAGNTADEAAAASVLLGASKKGVPRRIILVTSAFHMRRARFLFERAGFAVEPFLVDYQTSEKSPLTVLSFLPNAEALAQSDRALREVIGLLFYWVTK
>NC_011060.1|WP_012507418.1|596938_598237_+|nucleotide-sugar-dehydrogenase
MNSIRIAVVGLGYVGLPLAVEFAKKYPVVGFDIKQERVGELGQGYDATLEVTSEELKSVLCESNYNGEEGSPGLFVSSDSSDLGAVNYYIVTVPTPTDKNNRPDLSPLLKASETIGRVLKMGDIVIYESTVYPGATEEDCVPVLERFSGLTFNRDFFAGYSPERINPGDKEHTVTKIKKVTSGSTPDIATKVDSLYRSIIVAGTHLASSIRVAEAAKVIENSQRDINIAFVNELSVIFNRMGIDTHEVLAAAGTKWNFLPFKPGLVGGHCIGVDPYYLAQKAQEYGYHPEIILAGRRLNDNMGKYIASQVIKLMIARDHKIKGAKILMLGITFKENCPDIRNTRAVDIVNELKQYGAEVDIHDPWANPEEVMHEYGFECLHELNGNHYEAIILAVAHDAFAALDIRSLSSGINAVIYDVKGVLPIDKVSGRL
>NC_011060.1|WP_041526404.1|596401_596827_+|hypothetical-protein
MARREHGENFALDRGTLRAILRCALLKRWPKFQSVFVPLNKIAVIMMLQNYAAFYDHGVIELAGCRYSLKIALKEGLENSGIDSVLVTCNITIMKDGRKVLVWSAEVFKVGAGVLFNPSPLFRKWRIVLSGIGIGCGVNLI
>NC_011060.1|WP_190274055.1|596093_596246_+|hypothetical-protein
MSRGGCVLGVTVLKGKPEWATGKLSRATEQELEAWAEAILTAQTLEAVFK
>NC_011060.1|WP_012507416.1|594003_594195_+|addiction-module-protein
MDKLLINKAMKMPPIQRVALAELLLASIDYEEGDIREAWISEVHERMKAVNEGRSTLLDFDAL
>NC_011060.1|WP_012507414.1|593559_593835_+|hypothetical-protein
MQVVKNKEGKIEETGSVVTPCRPIEVNSEHDFKALGLASFFDTQEDNNVDWEEIFQAGSNVCPGLVPRVSPDQQDVSTLPADCGICYRKER
>NC_011060.1|WP_041526653.1|592580_593528_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MSIRSPRKLITFDWAMKRLLRSKANFEILEGFLSELLGEDITILEILESESNKESKLDKFNRVDLKVKNGKDEIIIIEVQYERELDYLQRMLYGTSRVITEHQQEGEPYATLVKVISVNILYFNLGHGSDYIYHGTTTFVGIHDNDKLQLDIRQQKQYGKMQINHIYPEYYLIRLNNFNSIAKTSLDEWIYFLKNEEIKDEFQAKGIQKAKRSFSLLSMSEAEQAAYARYQDDLRYQASLVESNYGLGLREGREAGITEGRVEGQTRLLRKLLERRFGVLPEWATGRLICASEQELEAWAEAILTAQTLEAVFTP
>NC_011060.1|WP_012507412.1|591470_592373_+|Rpn-family-recombination-promoting-nuclease/putative-transposase
MFIKDRYINPFTDFGFKKIFGSEVNKELLIAFLNTLLPPEAGTVADLSFLPNEQVGRSEYDRRAIFDLYCENEKGEKFIVEMQRAKQNYFKDRSVFYATFPIQQQAQSGDWNFCLKAVYMVGILDFVFDVDKADDAVVHHEVRLIDRSTGAVFYDKLTFIYLELPKFLKTIDELVTDFDKWCFLLRHLPELTDRPARLQEKVFLTVFELAEIAQYKSVEAGVYKESHKVYRDLKNVVDTAFDEGIAEGIVKGKAEGIAEGIAEGIQQKALEDAKRFKDAGVDIETIARCTGLPVTLVEGL
>NC_011060.1|WP_012507411.1|590659_591166_-|transposase
MFQDEARFGRISDPRKCWAPAPLRPIVKLALVREYVYAYAAVSPQDGVIDWMLGGKMDTVSMGAFLRQVSHKHPEEFVMMVVDGAPSHRAEHLRVPKNMVLVKLPPYSPELNPVEHLWDELREKEFANRVFETLGAVIAQAARGLKKMEEHPDGLRSLTGWDWILKSI
>NC_011060.1|WP_012507410.1|589666_590449_-|PEP-CTERM-sorting-domain-containing-protein
MTFIRWFRSVVRHKFISYLAGFAIVLAVHPCQGIAATEVITFYVSDNNISDPSALFGALPSDGYSVSSSYRLSEGSTSTSFTDLYSSSSATFTVGGDSGLKEGYRDAPELLKHDASTSKSGVGEAKISFDGLMANEQYSVVVYSQGQNDVRHTFITNLSIRVGSGTYSSIGTLTTDHLTTYRANGNYLTYDFTTDETGKAYVAFYTNPGNTLNRAGINAVQLVYGKSPTPEPSTYVLMGVGALIAGMVAWKKNLLIAKGK
>NC_011060.1|WP_012507421.1|601034_601625_+|UpxY-family-transcription-antiterminator
MDDVRNLLWYAVYVRSRYEKKVYQLLLEQGVVSFLPLLDTWKQWSDRKKRVSEPLFRGYVFVNIDLVREKIRVLDTEGVVKFIGIGRVPSVIVQRDIDWLKQLVREPDAIHRHVVSLPAGQRVKVLAGPFKDFEGVVVKQGRESRLVVFFESIMQGVEVTIFPDVLAPIAVAPSPVQGVAPLSGKLASVEKHLLRL
>NC_011060.1|WP_012507422.1|601744_602998_+|MFS-transporter
MEGFVQKGEHASIRDVFSLPVIVAALGYFVDIYDLVLFSIVRVPSLKSFGLSGKELIDYGVYLLNMQMIGMLVGGILWGWLGDRKGRLKIMFASILLYSLANIANGFVSSLPAYAVLRFVAGVGLAGELGAGITLVSEVLHTRIRGYGTMLVASIGVSGAILANIVANTYEWHNAFFIGGGLGLLLLVARVRVAESGMFKAMEAKSGMSRGNMLALFTDRGRFFRYINSIMIGVPIWFVVGVLITFSPEFGVELGISGPVSAGNAVMYCYLGLVFGDLSSGLLSQLLQSRKKVILLFMLLTVGAVALYFLQGHQSPQFFYVVCAVLGFAGGYWAIFVTVAAEQFGTNLRATVATTVPNLVRGMVVPITMLFQFFRGLFGLESGALLVGAICVTAAFLSLSALEETFHKDLDYYEEFL
>NC_011060.1|WP_012507423.1|603067_605908_-|excinuclease-ABC-subunit-UvrA
MEFSHINIRGARVHNLKNISLDIPRNKFVVITGLSGSGKSSLAFDTIYAEGQRRFMETLSPYARQYIGSIERPDVDYIEGLSPVISIDQKSTNRSPRSTVGTITEIHDFIRLLYAKAGRRYDPVTGAMLQQQSEESIGEAILALPQGTKIQILSPLVTGRKGHYRELFERLLLKGFLRVRIDGKYREMEKEMQIERYKSHSIELVVDRLVISPDCEDRLRDAISMAITMSEHRSTVICDPMESQLKELTFSTRYAYSDGSVPVDTLAPNHFSFNSPYGACPECNGLGELMQLSGELMTPDLTLSLNDGGLDPFGKSGKRNLWQVIRAIAREFNFTLDTPLTDIPQEAMKILLEGSGTRTFDVSYSYSGHDTLYPQPFPGALPYVEEILKNASSSKIREWAENYMLRKPCPSCKGARLRKESLLVKINEINIAQAESLTLPESLAFFKALPGNLSTKEQLVATPILHEIVKRLEFLLNVGLSYLSIDRSSQTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNHKLITSLKRLRDLGNTVLVVEHDKETMLEADEIIDLGPGAGEYGGEIVAQGAAATLDPNSLTAGYLNGERQVYCKKEEKTDPEEQQFLRLKGCRGNNLKNIDITIPLRSLVSITGVSGSGKSTIINETLYPILARHFYRSKLHTYPYDSIEGIKQLDKVVNVDQSPIGRTPRSNPATYTGAFTFIRDFFTRMPEAQIRGYKAGRFSFNVKGGRCEVCQGAGTRKIEMNFLPDVYVQCENCKGERYNRETLLVKYRGKSIADVLEMTITEAAEFFTDFPRILRILTTMQSVGLGYLKLGQPSPMLSGGEAQRIKLSAELAKIQTGNTLYILDEPTTGLHFQDIQHLLEVLRKLVDKGNSVIIIEHNLDIIKNSDWIIDIGPEGGNEGGNIIAEGTPEQIAQTEHSYTGQFLKAEMGIV
>NC_011060.1|WP_012507424.1|606153_608904_-|pyruvate,-phosphate-dikinase
MPQSEITNEKAGSKQYIYSFSGGSSEGDASMKNLLGGKGANLAEMANIGLPVPPGFTISTEVCTYYYENQKNYPKNLFEQGIPDALRKIEETLGKKFGDPENPLLVSVRSGARASMPGMMDTILNLGLNAQTVDGLAKKSGNPRFAWDCYRRFVQMYGDVVLDLKPTDKKQIDPFEKILEAKKHELGIELDTEFTVEDLQSIVADYKTAILEKTGKTFPEDPHEQLIGAIGAVFNSWNNERAIVYRKLNHIPGYWGTACNVQAMVFGNMGLDCGTGVAFTRDAATGDNIFYGEFLMNAQGEDVVAGTRTPLKIEQLKAENPGIYDQLEEIRSILEHHYHDMMDIEFTIENNILFMLQCRVGKRTGMAAVKIAVDMFNEKLIDEKEALLRIEPEQLNQLLRPVFDMKEKQAAIQEGRLLATGLNAGPGAATGKIYFNAVDAYEAGKRGEAVILVRIETSPEDIKGMDASEGILTERGGMTSHAALVARQMGKVCVAGCGALSIDYQRGELRVQGNDIVLHEGDYISIDGSTGEVIAGKVATKNSEIIEVLVDKSLKPEDAPTWPIYQQLMEWADKYRKLNIRTNADQPDQAEIAITFGAEGIGLCRTEHMFFGGERIDAMREMILADDVDGRKIALEKLLPYQRDDFYGLFKAMGSRPVTIRLLDPPLHEFLPHTDDEIRALSIKIGRSFEEIKERIGDLHEFNPMLGLRGCRLGILHPEITVMQVRAIIEAACKLKKEGLEVVPEIMVPLVSTVKELEITSEVIHKTARSVIAEQGTGVKYLVGTMIEVPRAAITSDQIATAADFFSYGTNDLTQMGLGMSRDDSGQFLPIYQQHEIFARNPFESIDKDGVGRLMSISAKEGRAVKPELKLGICGEHGGDPSTVEFCHQLGLNYVSCSPYRVPIARLAAARAALKG
>NC_011060.1|WP_012507425.1|609054_609936_+|ABC-transporter-permease
MEIDPLVIFLQILRLAVPYVLTSVGATFSERGGVVNLALEGMMLVGAFGAAFGQYRSGSALAGILLALVCGLCVALLFAFVTVTLKADQIVAGIAINILVMGATRFGLSLLFGSSMNSERIAGIAVPSLLLDPLFLAAVLSVVAGYLVLFRTPYGLRLRATGESAETADSAGINVDRMRYSGVLVSGALAALGGAFLVFQQHTFTDNMSAGRGYIALAAMIIGKWNPAGAALASLFFATTESMEIWLQTGWIPSQLVQSLPYVITLVVLAGFVGRASAPRDAGTAFEKNRKSD
>NC_011060.1|WP_012507426.1|610440_632142_+|outer-membrane-adhesin-like-protein
MSIDNTISLATVSEIIGKVWAELEDGTSRLLQAGDMVYEGEVIHTETGSLVVLRTTNGAVLRVTEGKEVVLGAGLFAPADKDIAGLVAEAGSDAPPVGLETSDSPEPPVVIENNPQSGNRLHGFVRVERAVESVNTPPYLLWAYTGKYNASTSRRSAGYSPLLEGRGTFDERLVIPVEPVTFAAVEPMVPLAPISMTYSSLPFDDVPKNNTAEVTASVQEDALLEGNRDTPEDTMVATGSVAPLIDTGADVPVTFSLQTTGLDAFGWTSNGVPLSFTVSGNTLTASVPSGPVFTLVLDPSTGAFTFTLSAPFDQPPGSGEEGTITLDLSSAIVVTDRDGDAITVDNGFTIIVENDVPIGVGGIAGSVDEDELPFGIPDGDGVTTVATGNISSLFSAGADQPLTYGLLTNTGGLPQGLTSAGDPVTYVVTGNTLTATAGGGTVFTLVLDPATGDYTFTLSDRLDHPLTNGDDNEILPLDLTSILQATDSDGDHSASAGTFTINVEDDVPVGSGLVTGNVDEDELPLGITDSDAFNTVATGNISGLFSAGADQPGRYGLSSETGGLRQDLTSAGVAVTYSVKNNILTASSGSIPVFTLELDSVTGVYTFTLLAQLDHPLANGDDNEILPLNLTSILEVTDSDGDPLITTGTFIINVEDDVPVGSGTIVGNVDEDELPDGITDGDTVTTVARGNVAALFRIGADQRGNFGLSGNTSGLPVLYSSGMSVVYTFTDNTLTATAGGNPVFTLVVDSVTGDYTFTLIDHIDHPRADGDDTEILQLNLTGILQVTDEDGDPLMTAGTFTINIEDDVPIGTGAIVGEVQEDALLDGNRETASQTVVAQGNLAALFQIGADNPGTYGLTGDTSGLPELRSVGIRVDYAVTVNTLTATAGGNPVFTLVIDPATGDYTFTLLDQLDHPRGDGDDSETLSLDLTGLLRVTDSDGDTLNTSGTFTISIEDDVPVGVGILQRTVHEDALNGGNRETPSQVISVNGSIAGLVSIGADQPGTYLFTLSADTSHLPILKSAGLPVLYDVTPDGNILTAYVDSDGIAGYNSQTDRPVFKLVVDTSTGNYVFTLLDQLDHPLNNGNDSETLSIDFSSILRVSDQDGDPLATFGAFTINVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDQITINASSLLITVEDDIPIARNDSTLYIKEGSEMATSVGNLAWNLLTSTNPSGGATSWRDYSGADESITITRVDYVDSLGASQFKILSGGTTGELDTKYGKLTVFSDGEWQYTPDPWVNHSTEPVSETITYTITDRDGDTATATKTLVVEDTATTISDPLDNSVYERNLSTGSDPNPVLLVKTGTLGVNKQADPINVVFNGAPPPTGITSNKKTIFYHESPDGHTLTATDLEADGGNVIFTIEIKNYDSKDASYEFTLYRAVDHLYEDQNTGATISHDPIEFPIRYKVLEPYDNDTVLNFPSGVNGGGLAEFTVTIYDDTALVEPLLTFQEDEPDPGERTMTVNADARSTNLSITGTPAAHGTVQVNDGTISGLPDGTITYTPFPNTNYSGTDTFEYTLEIENTSTTEIRTVTVTVIPVSDAPGVTALDYTLSTLEDTQIDLRLYAPTVGDKTDQNGIGTAGDDPERLGAITLSGIPVGAKIFKADGTTLVFEATTGHTSFTVMLVSGGTTPVTGTDSKSLFLAETTANSYLTVLEYEGLKLLPPPNSGNNFSPAITVSVTEYEVDAAGYQKEVSGVAVPGVTTTATIAVEVLAVTDIPPAPGLLIDGFDTPYTANFEEDTVFDLGALLSTTSFDDTTDGSEHREIVLSGLLKDTIVTSNALPGPVTIGATGTVTIPLINSTVPAGIQNVLPGITITPPPNFSGEMNGITVTLQALDTDPNLPAASPVPVSWTDSVTLNLLVLPVADDIAAPDVSTSEDQSVRFLKDLRVTDISSGLTTGGTEIITAITVSDLALGWVIKNPSGTVVFTGDGTADFSIPVGDYTNYTVTPPPHSSADTTVKVLVTTTDTATIQGIDITDNSKIDQLHNIKVTVTPVAEAVAGSAVHNGTSVTVTAAEADSDVSGTADLAINPHHTYTTHGTEGQFVSLTEAGSSPFAIGSFWHNEDADGSERTYALFTPTYLVGGVLTDMIEAEFQYTDGSGVHTEIFKGTPIAVEMPYLHTVSFKAKPGYSGAVTIDVQAKTVDHGPDDTTTDVFNVSGLAHLDFIVDPVPNQVTLAVTSPVPIDEDLLRTLSIRPTSTDTDGSESFTITITGIPNGSEMIYDGSTIYAITDTSGTVTINHFDSSKTFTIQPPHNSNEDITLHVTGHTVEVLDPTNPGTICQPLDIIVDVRGVADPVDVVTTVAGFSEQRLDSLPPSDLISMSSLISVTRQDTDGSETLSFYFTGLANGFDISGVNVSFLGGTGTERRWLLTPGDFAGTTMTVPKNFSGTVTFQGVPVTSENDGNSWTGDTWDPVGLRWTNNTSTGDPIPLSLTVSPSPEATIVDHTVFNEDQWILTDPLNPVMGAYARVNFDLLPQPLVDTNEVLTSVWIKAADVDGRVFTLSYDADDAGAGSPIVLGAVGGILADDGYYKLTAEQSKHIYVQNTHDLHGSYTFEVQYAITDPTSDGTTVRIINPATGGWTGVTANSVTTQSTIAAYTLTVNAVTDPITDPLGTISAADETSSHTVISGDVVTVYGSTVLTVPVVVTQSNYLAENPDGQDLDGSEMLERFIIDGVPDGITVVGATYVGDTGTTPNTGRWILDVNPDLPFTSTIPRNIAFDFDGVASQFIGWSKTITITAESRDTGSGIRSASVSFTIDNSLVVSFDDSGRATNIPAAITPWGLNTVSMTEDTASMLADLATVAISSITDSSPFSITLKNVQAGTIVTGMERMVLPGDEVIYTASGSGGDATLQTLLHNITLTPPPDSNENNHNDLFVFDLALTTYAPGGQQNTEKFHGQIEVLPDSDPTTSVITPRAGSEYEDDTTRPSKVDSGAGVLFTVAFENAADGSSNQLLGNVMLVIDERSMDSYLGGLVLTDDGTGKVLTLESSGGGFANYSISGVLASDVLTLTYFPVPNASGSIEITASVNSRETGSVQISGTPGSLTIDVIPVIDGYNPTSIVATGPEDTRIQLAITGGGLIDLDGSESVQSILLKKLHNCCLVYIGDDAASAVLALNAGSDASGHNTWSIGKLSTITGKIELPNYVAIVPPNNLSGTVEGLELVVITTETHLPGELLEQTFLFDTVVTPVSDGLTTISPTHSFGPEGQMVPINLNVSMADFDGSETATVTLRGFRQYASFYGASGTELTLAQFNPATDYNSGTDTYTLHGLTVEDTNALSVIQSATNGTSTVYVAAYTVDGAAPQSVTTPEKSFTLNISPIVPTTSNDTLLYDGVADLANTRSFDGLAGTDTLVLRKGEDIDFADSPVDRSIFNIEYIDLTVNGNHSLSNITSAGVAAMTDPSTHDLYILGDGGDHVAFTGADWSTATRIGDYNVYTSSTDPTVKVSVYKDIL
>NC_011060.1|WP_041526405.1|632174_633596_+|TolC-family-outer-membrane-protein
MKQTTNKNLKTLAVAVLLLCLGSPQTVEAKAVTASEAVTAALNTNPEVQAKFHAFRDVYEEQGVANGGYMPKLDFSAGVGRHWLKSESNGDENYWRKGLRLELSQMLFDGFYTRNQVHRLKHSGQARYLEFMDSMENIGLESFRAYMDVLRYREMVNLSRRNYEYHQEIYKQISSRVRAGVAAGVDMEQITARLSLAQSNLVTELSNQHDVSARYQRYIGELPEENLAPAVLPDKGIPATKVATLKEAYQYNFGFLATLSDIRAAQYAVNVQKAKYYPRIDFKARHDRSWNLDGVDGRRDESVAELVLNYNIINGGADQAALHQYREKMYRSVDLKDKAARDLRQTIEIAYNEREMIKEQLQYFDRHYKSMEKVREAYHEQFNIGKRTLLDLLDTENEYYQARRAFYNGFFDLTIANARTLAGLGRLLTTMGVVRGEMPSLKDINIPMPEVKDEDLPPFDVPVRGKLDLPEVK
>NC_011060.1|WP_012507428.1|633654_634368_+|peptidylprolyl-isomerase
MSVAVTVGKRELVVDDVVSLLAGHNLWPQLMEGVVVDRVLRTLGCSEEEIGVYYTTELAADAVFLEKKRAQLLLDGAKEEDVDFFISRPVLLELFKRRRFEPLVGSAFLKLKAGMDKVLFSLLRNKDHELTRELFFRLESGEESFASLAARYAEGREALSGGRLGPIEMQQLNPALAAVLSTARPGVVNPPVVIDGLGVITLLHEKIPAKFDEPMKQHLLNHLFREWVKAEVLAFFY
>NC_011060.1|WP_012507429.1|634424_637475_+|peptidase-domain-containing-ABC-transporter
MSHTIADSDADICKVIGGIPLFSGLAEGKIRMLAGVCSVERYTIGKPVISAGMPPDSLYVIISGRVRSLYKEGSNGVVQTLRLLGAGELFGWVALMRRQPTEIVTASEETLCLKIPLSSLSMVINELPLLYDLLFSKTDPSEICALLETLFSKDPRVEARIGESGFSGIRDLSLHLYPSAVVVDTGFSRVIPQKKLQWFVSRSDDPAYPPGSEYRPSSGELAGSFSLRLVGLDLSCLKESAVEVKPIVAEPLRGEPLAGIASSERPQGEPVREQPREEFSCQTEEEQVSGRSKGFYFCKGRGVVEETTACFQMFGKHMNVPVKKDLIQSIIGNQYARNGQISLQDCGGVGVVLGLKAQVVSFSEEAMLRLKVPALIGWEKSFAVLYKVTAKEVTLAVPSASGIKVLAVKEFWEKWDRRGEALVLDAREDTPEKKFGFDWFAPSIKKYRNVLGEVMIASFFTQIMTLVNPLLFMVIIDQVIVKNSYSTLHVLGTFMLIIAILQAVLNSLRTYLFVDTTNRIDVALGAEVIDHLLRLPLRFFEKRPVGELSSRIGELEHIRQFLTGTALGVVLDAVFSFVYVVVLFAFSWKLAVMALSVVPVIGLITFLLSPVIRKQLREKAVKHSLTNAYLIEVLSGIQTVKSQNIELRARWNWQEKYASYVKEGFKPVVSGTIANSANSFLSQASGLIVIWAGAALVLNNELTLGQLIAFRIIAGYITSPVMRLAQLWQNFQETGMSLERLADIVDTPQEGGKDQLAQIPLPLVKGEIFCENVSFRFRDNSPMVLKNVTVTIPEAAFVGIVGESGSGKSTFAKLIQRLYRLEEGRIFIDHYDIAKVELNSLRSQIGIVPQDPMLFNVSVKENIALTNPDATDADIIRAARIAEAHDFIMALPTGYNTPVGEKGSSLSGGQRQRIAIARTILQNPGLIILDEATSALDSDTESRLTANLITAFRGKTVLFITHRLNSVKAASLILCFHDGCIDEAGTHDDLMGRKGRYYSLFQKQSFSIPVMEGSLG
>NC_011060.1|WP_012507430.1|637471_638461_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MKNPFADDLIGQGEVFTQSVMVPRAILWVLVLAFFGFIVWASVAEIDVSIPATGKLEPTGEVKKVQAAIEGEVSALRVDDGQRVKKGEVLLELVPVLSVGEESKLKSLQINLDNTRQQYATESVLLGKLRSLLSTAAVSQFEVEQKKLDVLKLQAQVADLTEQISKQQYMTGQATGYESITAPVSGTVFDLQVKKGAIVSSGQVMLKVVPDDNLTTKAFISNQDIGFVYEGLPVDVKLDAFPSSEFGDIKGRVLQVGSDVLAPDDIIKYYHFPVKVTLERQFLEVNGRKIFLQSGMSVTMNIKVRKRTVMSIFTDLFTQQADAISHIRK

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Crispr_ID: NC_011060_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011060_2

639132-639389

Orphan

Consensus_repeat	Method
TGAGTTATGATAGAGCTCTTGCACTCGAACCGGATTATGCAGAGGCTCATTCTAATCG	PILER-CR

2 spacers

The CRISPR arrays of NC_011060_2

>merge|NC_011060|2|639132-639389|PILER-CR
TTACGATAGAGCTCTTGCACTCGAACCGGATTATGTTGCGGCTTATTTTAATCGTGGCCTGGCCTTAAAAAAGCTGAAACGGTATGATGAAGCTGTTTTGAGTTATGACAAGGCGATTGCACTTGAACCGGATTATGCAGAGGCACACTCAAATCGAGGTAATGCGTTAACAGAATTGAAACGTTACCATGATGCCGTTCTGAGTTATGATAGAGCTCTTGCACTCAAACCGGATTATGCCAAGGCTCATGCTAATCG

>NC_011060|2|1|639132-639389|PILER-CR
TTACGATAGAGCTCTTGCACTCGAACCGGATTATGTTGCGGCTTATTTTAATCGTGGC	CTGGCCTTAAAAAAGCTGAAACGGTATGATGAAGCTGTTTTGAG
TTATGACAAGGCGATTGCACTTGAACCGGATTATGCAGAGGCACACTCAAATCGAGGT	AATGCGTTAACAGAATTGAAACGTTACCATGATGCCGTTCTGAG
TTATGATAGAGCTCTTGCACTCAAACCGGATTATGCCAAGGCTCATGCTAATCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011060.1\|WP_049759881.1\|654315_654807_+\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_041526405.1\|632174_633596_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NC_011060.1\|WP_012507441.1\|663126_664407_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NC_011060.1\|WP_012507425.1\|609054_609936_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224005
NC_011060.1\|WP_012507433.1\|653068_653818_+\|FkbM-family-methyltransferase	unknown	unknown	gnl\|CDD\|273628
NC_011060.1\|WP_012507432.1\|652081_652864_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133055
NC_011060.1\|WP_012507435.1\|655352_658637_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226428
NC_011060.1\|WP_012507436.1\|658935_659619_+\|DUF1566-domain-containing-protein	unknown	unknown	gnl\|CDD\|377878
NC_011060.1\|WP_012507423.1\|603067_605908_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NC_011060.1\|WP_012507429.1\|634424_637475_+\|peptidase-domain-containing-ABC-transporter	unknown	unknown	gnl\|CDD\|225183
NC_011060.1\|WP_012507438.1\|660681_661224_+\|hydrolase	unknown	unknown	gnl\|CDD\|238494
NC_011060.1\|WP_012507430.1\|637471_638461_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NC_011060.1\|WP_012507422.1\|601744_602998_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NC_011060.1\|WP_012507424.1\|606153_608904_-\|pyruvate,-phosphate-dikinase	unknown	unknown	gnl\|CDD\|236446
NC_011060.1\|WP_012507440.1\|662338_662950_-\|DUF374-domain-containing-protein	unknown	unknown	gnl\|CDD\|153245
NC_011060.1\|WP_012507437.1\|659917_660415_+\|DUF1566-domain-containing-protein	unknown	unknown	gnl\|CDD\|377878
NC_011060.1\|WP_012507426.1\|610440_632142_+\|outer-membrane-adhesin-like-protein	unknown	unknown	gnl\|CDD\|132699
NC_011060.1\|WP_012507428.1\|633654_634368_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|376360
NC_011060.1\|WP_012507439.1\|661278_662346_-\|tetraacyldisaccharide-4'-kinase	unknown	unknown	gnl\|CDD\|376853
NC_011060.1\|WP_012507421.1\|601034_601625_+\|UpxY-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|193582

Protein	Function_ID	Function_description	E-value
NC_011060.1\|WP_041526405.1\|632174_633596_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.06178e-67
NC_011060.1\|WP_012507441.1\|663126_664407_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NC_011060.1\|WP_012507425.1\|609054_609936_+\|ABC-transporter-permease	gnl\|CDD\|224005	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only].	4.10397e-83
NC_011060.1\|WP_012507433.1\|653068_653818_+\|FkbM-family-methyltransferase	gnl\|CDD\|273628	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.	6.40076e-05
NC_011060.1\|WP_012507432.1\|652081_652864_+\|glycosyltransferase	gnl\|CDD\|133055	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	7.88477e-12
NC_011060.1\|WP_012507435.1\|655352_658637_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	3.52171e-135
NC_011060.1\|WP_012507436.1\|658935_659619_+\|DUF1566-domain-containing-protein	gnl\|CDD\|377878	pfam07603, DUF1566, Protein of unknown function (DUF1566). These proteins of unknown function are found in Leptospira interrogans and in several gamma proteobacteria.	9.21808e-14
NC_011060.1\|WP_012507423.1\|603067_605908_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NC_011060.1\|WP_012507429.1\|634424_637475_+\|peptidase-domain-containing-ABC-transporter	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
NC_011060.1\|WP_012507438.1\|660681_661224_+\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	2.35254e-61
NC_011060.1\|WP_012507430.1\|637471_638461_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	2.86201e-24
NC_011060.1\|WP_012507422.1\|601744_602998_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.14426e-29
NC_011060.1\|WP_012507424.1\|606153_608904_-\|pyruvate,-phosphate-dikinase	gnl\|CDD\|236446	PRK09279, PRK09279, pyruvate phosphate dikinase; Provisional.	0
NC_011060.1\|WP_012507440.1\|662338_662950_-\|DUF374-domain-containing-protein	gnl\|CDD\|153245	cd07983, LPLAT_DUF374-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.	2.16723e-52
NC_011060.1\|WP_012507437.1\|659917_660415_+\|DUF1566-domain-containing-protein	gnl\|CDD\|377878	pfam07603, DUF1566, Protein of unknown function (DUF1566). These proteins of unknown function are found in Leptospira interrogans and in several gamma proteobacteria.	1.7062e-10
NC_011060.1\|WP_012507426.1\|610440_632142_+\|outer-membrane-adhesin-like-protein	gnl\|CDD\|132699	TIGR03660, T1SS_rpt_143, T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion. [Cellular processes, Pathogenesis].	5.32804e-17
NC_011060.1\|WP_012507428.1\|633654_634368_+\|peptidylprolyl-isomerase	gnl\|CDD\|376360	pfam00639, Rotamase, PPIC-type PPIASE domain. Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline.	1.10204e-06
NC_011060.1\|WP_012507439.1\|661278_662346_-\|tetraacyldisaccharide-4'-kinase	gnl\|CDD\|376853	pfam02606, LpxK, Tetraacyldisaccharide-1-P 4'-kinase. This family consists of tetraacyldisaccharide-1-P 4'-kinase also known as Lipid-A 4'-kinase or Lipid A biosynthesis protein LpxK, EC:2.7.1.130. This enzyme catalyzes the reaction: ATP + 2,3-bis(3-hydroxytetradecanoyl)-D -glucosaminyl-(beta-D-1,6)-2,3-bis(3-hydroxytetradecanoyl)-D-glu cosam inyl beta-phosphate <=> ADP + 2,3,2',3'-tetrakis(3-hydroxytetradecanoyl)-D- glucosaminyl-1,6-beta-D-glucosamine 1,4'-bisphosphate. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS). The family contains a P-loop motif at the N-terminus.	3.74322e-113
NC_011060.1\|WP_012507421.1\|601034_601625_+\|UpxY-family-transcription-antiterminator	gnl\|CDD\|193582	cd09893, NGN_SP_TaA, N-Utilization Substance G (NusG) N-terminal domain in the NusG Specialized Paralog (SP), TaA. The N-Utilization Substance G (NusG) protein is involved in transcription elongation and termination. NusG is essential in Escherichia coli and is associated with RNA polymerase elongation and Rho-termination in bacteria. Paralogs of eubacterial NusG, NusG SP (Specialized Paralog of NusG), are more diverse and often found as the first ORF in operons encoding secreted proteins and LPS biosynthesis genes. NusG SP family members are operon-specific transcriptional antiterminationn factors. TaA is a NusG SP factor that is required for synthesis of a polyketide antibiotic TA in Myxococcus xanthus. Orthologs of the NusG gene exist in all bacteria, but its functions and requirements are different. The NusG N-terminal (NGN) domain is quite similar in all NusG orthologs, but its C-terminal domains and the linker that separate these two domains are different. The domain organization of NusG and its orthologs suggest that the common properties of NusG and its orthologs and paralogs are due to their similar NGN domains.	8.36244e-27

>NC_011060.1|WP_012507430.1|637471_638461_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MKNPFADDLIGQGEVFTQSVMVPRAILWVLVLAFFGFIVWASVAEIDVSIPATGKLEPTGEVKKVQAAIEGEVSALRVDDGQRVKKGEVLLELVPVLSVGEESKLKSLQINLDNTRQQYATESVLLGKLRSLLSTAAVSQFEVEQKKLDVLKLQAQVADLTEQISKQQYMTGQATGYESITAPVSGTVFDLQVKKGAIVSSGQVMLKVVPDDNLTTKAFISNQDIGFVYEGLPVDVKLDAFPSSEFGDIKGRVLQVGSDVLAPDDIIKYYHFPVKVTLERQFLEVNGRKIFLQSGMSVTMNIKVRKRTVMSIFTDLFTQQADAISHIRK
>NC_011060.1|WP_012507429.1|634424_637475_+|peptidase-domain-containing-ABC-transporter
MSHTIADSDADICKVIGGIPLFSGLAEGKIRMLAGVCSVERYTIGKPVISAGMPPDSLYVIISGRVRSLYKEGSNGVVQTLRLLGAGELFGWVALMRRQPTEIVTASEETLCLKIPLSSLSMVINELPLLYDLLFSKTDPSEICALLETLFSKDPRVEARIGESGFSGIRDLSLHLYPSAVVVDTGFSRVIPQKKLQWFVSRSDDPAYPPGSEYRPSSGELAGSFSLRLVGLDLSCLKESAVEVKPIVAEPLRGEPLAGIASSERPQGEPVREQPREEFSCQTEEEQVSGRSKGFYFCKGRGVVEETTACFQMFGKHMNVPVKKDLIQSIIGNQYARNGQISLQDCGGVGVVLGLKAQVVSFSEEAMLRLKVPALIGWEKSFAVLYKVTAKEVTLAVPSASGIKVLAVKEFWEKWDRRGEALVLDAREDTPEKKFGFDWFAPSIKKYRNVLGEVMIASFFTQIMTLVNPLLFMVIIDQVIVKNSYSTLHVLGTFMLIIAILQAVLNSLRTYLFVDTTNRIDVALGAEVIDHLLRLPLRFFEKRPVGELSSRIGELEHIRQFLTGTALGVVLDAVFSFVYVVVLFAFSWKLAVMALSVVPVIGLITFLLSPVIRKQLREKAVKHSLTNAYLIEVLSGIQTVKSQNIELRARWNWQEKYASYVKEGFKPVVSGTIANSANSFLSQASGLIVIWAGAALVLNNELTLGQLIAFRIIAGYITSPVMRLAQLWQNFQETGMSLERLADIVDTPQEGGKDQLAQIPLPLVKGEIFCENVSFRFRDNSPMVLKNVTVTIPEAAFVGIVGESGSGKSTFAKLIQRLYRLEEGRIFIDHYDIAKVELNSLRSQIGIVPQDPMLFNVSVKENIALTNPDATDADIIRAARIAEAHDFIMALPTGYNTPVGEKGSSLSGGQRQRIAIARTILQNPGLIILDEATSALDSDTESRLTANLITAFRGKTVLFITHRLNSVKAASLILCFHDGCIDEAGTHDDLMGRKGRYYSLFQKQSFSIPVMEGSLG
>NC_011060.1|WP_012507428.1|633654_634368_+|peptidylprolyl-isomerase
MSVAVTVGKRELVVDDVVSLLAGHNLWPQLMEGVVVDRVLRTLGCSEEEIGVYYTTELAADAVFLEKKRAQLLLDGAKEEDVDFFISRPVLLELFKRRRFEPLVGSAFLKLKAGMDKVLFSLLRNKDHELTRELFFRLESGEESFASLAARYAEGREALSGGRLGPIEMQQLNPALAAVLSTARPGVVNPPVVIDGLGVITLLHEKIPAKFDEPMKQHLLNHLFREWVKAEVLAFFY
>NC_011060.1|WP_041526405.1|632174_633596_+|TolC-family-outer-membrane-protein
MKQTTNKNLKTLAVAVLLLCLGSPQTVEAKAVTASEAVTAALNTNPEVQAKFHAFRDVYEEQGVANGGYMPKLDFSAGVGRHWLKSESNGDENYWRKGLRLELSQMLFDGFYTRNQVHRLKHSGQARYLEFMDSMENIGLESFRAYMDVLRYREMVNLSRRNYEYHQEIYKQISSRVRAGVAAGVDMEQITARLSLAQSNLVTELSNQHDVSARYQRYIGELPEENLAPAVLPDKGIPATKVATLKEAYQYNFGFLATLSDIRAAQYAVNVQKAKYYPRIDFKARHDRSWNLDGVDGRRDESVAELVLNYNIINGGADQAALHQYREKMYRSVDLKDKAARDLRQTIEIAYNEREMIKEQLQYFDRHYKSMEKVREAYHEQFNIGKRTLLDLLDTENEYYQARRAFYNGFFDLTIANARTLAGLGRLLTTMGVVRGEMPSLKDINIPMPEVKDEDLPPFDVPVRGKLDLPEVK
>NC_011060.1|WP_012507426.1|610440_632142_+|outer-membrane-adhesin-like-protein
MSIDNTISLATVSEIIGKVWAELEDGTSRLLQAGDMVYEGEVIHTETGSLVVLRTTNGAVLRVTEGKEVVLGAGLFAPADKDIAGLVAEAGSDAPPVGLETSDSPEPPVVIENNPQSGNRLHGFVRVERAVESVNTPPYLLWAYTGKYNASTSRRSAGYSPLLEGRGTFDERLVIPVEPVTFAAVEPMVPLAPISMTYSSLPFDDVPKNNTAEVTASVQEDALLEGNRDTPEDTMVATGSVAPLIDTGADVPVTFSLQTTGLDAFGWTSNGVPLSFTVSGNTLTASVPSGPVFTLVLDPSTGAFTFTLSAPFDQPPGSGEEGTITLDLSSAIVVTDRDGDAITVDNGFTIIVENDVPIGVGGIAGSVDEDELPFGIPDGDGVTTVATGNISSLFSAGADQPLTYGLLTNTGGLPQGLTSAGDPVTYVVTGNTLTATAGGGTVFTLVLDPATGDYTFTLSDRLDHPLTNGDDNEILPLDLTSILQATDSDGDHSASAGTFTINVEDDVPVGSGLVTGNVDEDELPLGITDSDAFNTVATGNISGLFSAGADQPGRYGLSSETGGLRQDLTSAGVAVTYSVKNNILTASSGSIPVFTLELDSVTGVYTFTLLAQLDHPLANGDDNEILPLNLTSILEVTDSDGDPLITTGTFIINVEDDVPVGSGTIVGNVDEDELPDGITDGDTVTTVARGNVAALFRIGADQRGNFGLSGNTSGLPVLYSSGMSVVYTFTDNTLTATAGGNPVFTLVVDSVTGDYTFTLIDHIDHPRADGDDTEILQLNLTGILQVTDEDGDPLMTAGTFTINIEDDVPIGTGAIVGEVQEDALLDGNRETASQTVVAQGNLAALFQIGADNPGTYGLTGDTSGLPELRSVGIRVDYAVTVNTLTATAGGNPVFTLVIDPATGDYTFTLLDQLDHPRGDGDDSETLSLDLTGLLRVTDSDGDTLNTSGTFTISIEDDVPVGVGILQRTVHEDALNGGNRETPSQVISVNGSIAGLVSIGADQPGTYLFTLSADTSHLPILKSAGLPVLYDVTPDGNILTAYVDSDGIAGYNSQTDRPVFKLVVDTSTGNYVFTLLDQLDHPLNNGNDSETLSIDFSSILRVSDQDGDPLATFGAFTINVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDAITINSGSLLIEVEDDIPVQTTATVVGSVQEDALSGGNLDNTAADTTIATGNISGLVSVGADASATYSVQASGLPTLTSNGNTVTYSAVDTNSDTITDKLVASASGSTVFTLELNQTSGAYTFTLLDQLDHPVSNSDDTEIMTLDLSGGLVATDKDGDQITINASSLLITVEDDIPIARNDSTLYIKEGSEMATSVGNLAWNLLTSTNPSGGATSWRDYSGADESITITRVDYVDSLGASQFKILSGGTTGELDTKYGKLTVFSDGEWQYTPDPWVNHSTEPVSETITYTITDRDGDTATATKTLVVEDTATTISDPLDNSVYERNLSTGSDPNPVLLVKTGTLGVNKQADPINVVFNGAPPPTGITSNKKTIFYHESPDGHTLTATDLEADGGNVIFTIEIKNYDSKDASYEFTLYRAVDHLYEDQNTGATISHDPIEFPIRYKVLEPYDNDTVLNFPSGVNGGGLAEFTVTIYDDTALVEPLLTFQEDEPDPGERTMTVNADARSTNLSITGTPAAHGTVQVNDGTISGLPDGTITYTPFPNTNYSGTDTFEYTLEIENTSTTEIRTVTVTVIPVSDAPGVTALDYTLSTLEDTQIDLRLYAPTVGDKTDQNGIGTAGDDPERLGAITLSGIPVGAKIFKADGTTLVFEATTGHTSFTVMLVSGGTTPVTGTDSKSLFLAETTANSYLTVLEYEGLKLLPPPNSGNNFSPAITVSVTEYEVDAAGYQKEVSGVAVPGVTTTATIAVEVLAVTDIPPAPGLLIDGFDTPYTANFEEDTVFDLGALLSTTSFDDTTDGSEHREIVLSGLLKDTIVTSNALPGPVTIGATGTVTIPLINSTVPAGIQNVLPGITITPPPNFSGEMNGITVTLQALDTDPNLPAASPVPVSWTDSVTLNLLVLPVADDIAAPDVSTSEDQSVRFLKDLRVTDISSGLTTGGTEIITAITVSDLALGWVIKNPSGTVVFTGDGTADFSIPVGDYTNYTVTPPPHSSADTTVKVLVTTTDTATIQGIDITDNSKIDQLHNIKVTVTPVAEAVAGSAVHNGTSVTVTAAEADSDVSGTADLAINPHHTYTTHGTEGQFVSLTEAGSSPFAIGSFWHNEDADGSERTYALFTPTYLVGGVLTDMIEAEFQYTDGSGVHTEIFKGTPIAVEMPYLHTVSFKAKPGYSGAVTIDVQAKTVDHGPDDTTTDVFNVSGLAHLDFIVDPVPNQVTLAVTSPVPIDEDLLRTLSIRPTSTDTDGSESFTITITGIPNGSEMIYDGSTIYAITDTSGTVTINHFDSSKTFTIQPPHNSNEDITLHVTGHTVEVLDPTNPGTICQPLDIIVDVRGVADPVDVVTTVAGFSEQRLDSLPPSDLISMSSLISVTRQDTDGSETLSFYFTGLANGFDISGVNVSFLGGTGTERRWLLTPGDFAGTTMTVPKNFSGTVTFQGVPVTSENDGNSWTGDTWDPVGLRWTNNTSTGDPIPLSLTVSPSPEATIVDHTVFNEDQWILTDPLNPVMGAYARVNFDLLPQPLVDTNEVLTSVWIKAADVDGRVFTLSYDADDAGAGSPIVLGAVGGILADDGYYKLTAEQSKHIYVQNTHDLHGSYTFEVQYAITDPTSDGTTVRIINPATGGWTGVTANSVTTQSTIAAYTLTVNAVTDPITDPLGTISAADETSSHTVISGDVVTVYGSTVLTVPVVVTQSNYLAENPDGQDLDGSEMLERFIIDGVPDGITVVGATYVGDTGTTPNTGRWILDVNPDLPFTSTIPRNIAFDFDGVASQFIGWSKTITITAESRDTGSGIRSASVSFTIDNSLVVSFDDSGRATNIPAAITPWGLNTVSMTEDTASMLADLATVAISSITDSSPFSITLKNVQAGTIVTGMERMVLPGDEVIYTASGSGGDATLQTLLHNITLTPPPDSNENNHNDLFVFDLALTTYAPGGQQNTEKFHGQIEVLPDSDPTTSVITPRAGSEYEDDTTRPSKVDSGAGVLFTVAFENAADGSSNQLLGNVMLVIDERSMDSYLGGLVLTDDGTGKVLTLESSGGGFANYSISGVLASDVLTLTYFPVPNASGSIEITASVNSRETGSVQISGTPGSLTIDVIPVIDGYNPTSIVATGPEDTRIQLAITGGGLIDLDGSESVQSILLKKLHNCCLVYIGDDAASAVLALNAGSDASGHNTWSIGKLSTITGKIELPNYVAIVPPNNLSGTVEGLELVVITTETHLPGELLEQTFLFDTVVTPVSDGLTTISPTHSFGPEGQMVPINLNVSMADFDGSETATVTLRGFRQYASFYGASGTELTLAQFNPATDYNSGTDTYTLHGLTVEDTNALSVIQSATNGTSTVYVAAYTVDGAAPQSVTTPEKSFTLNISPIVPTTSNDTLLYDGVADLANTRSFDGLAGTDTLVLRKGEDIDFADSPVDRSIFNIEYIDLTVNGNHSLSNITSAGVAAMTDPSTHDLYILGDGGDHVAFTGADWSTATRIGDYNVYTSSTDPTVKVSVYKDIL
>NC_011060.1|WP_012507425.1|609054_609936_+|ABC-transporter-permease
MEIDPLVIFLQILRLAVPYVLTSVGATFSERGGVVNLALEGMMLVGAFGAAFGQYRSGSALAGILLALVCGLCVALLFAFVTVTLKADQIVAGIAINILVMGATRFGLSLLFGSSMNSERIAGIAVPSLLLDPLFLAAVLSVVAGYLVLFRTPYGLRLRATGESAETADSAGINVDRMRYSGVLVSGALAALGGAFLVFQQHTFTDNMSAGRGYIALAAMIIGKWNPAGAALASLFFATTESMEIWLQTGWIPSQLVQSLPYVITLVVLAGFVGRASAPRDAGTAFEKNRKSD
>NC_011060.1|WP_012507424.1|606153_608904_-|pyruvate,-phosphate-dikinase
MPQSEITNEKAGSKQYIYSFSGGSSEGDASMKNLLGGKGANLAEMANIGLPVPPGFTISTEVCTYYYENQKNYPKNLFEQGIPDALRKIEETLGKKFGDPENPLLVSVRSGARASMPGMMDTILNLGLNAQTVDGLAKKSGNPRFAWDCYRRFVQMYGDVVLDLKPTDKKQIDPFEKILEAKKHELGIELDTEFTVEDLQSIVADYKTAILEKTGKTFPEDPHEQLIGAIGAVFNSWNNERAIVYRKLNHIPGYWGTACNVQAMVFGNMGLDCGTGVAFTRDAATGDNIFYGEFLMNAQGEDVVAGTRTPLKIEQLKAENPGIYDQLEEIRSILEHHYHDMMDIEFTIENNILFMLQCRVGKRTGMAAVKIAVDMFNEKLIDEKEALLRIEPEQLNQLLRPVFDMKEKQAAIQEGRLLATGLNAGPGAATGKIYFNAVDAYEAGKRGEAVILVRIETSPEDIKGMDASEGILTERGGMTSHAALVARQMGKVCVAGCGALSIDYQRGELRVQGNDIVLHEGDYISIDGSTGEVIAGKVATKNSEIIEVLVDKSLKPEDAPTWPIYQQLMEWADKYRKLNIRTNADQPDQAEIAITFGAEGIGLCRTEHMFFGGERIDAMREMILADDVDGRKIALEKLLPYQRDDFYGLFKAMGSRPVTIRLLDPPLHEFLPHTDDEIRALSIKIGRSFEEIKERIGDLHEFNPMLGLRGCRLGILHPEITVMQVRAIIEAACKLKKEGLEVVPEIMVPLVSTVKELEITSEVIHKTARSVIAEQGTGVKYLVGTMIEVPRAAITSDQIATAADFFSYGTNDLTQMGLGMSRDDSGQFLPIYQQHEIFARNPFESIDKDGVGRLMSISAKEGRAVKPELKLGICGEHGGDPSTVEFCHQLGLNYVSCSPYRVPIARLAAARAALKG
>NC_011060.1|WP_012507423.1|603067_605908_-|excinuclease-ABC-subunit-UvrA
MEFSHINIRGARVHNLKNISLDIPRNKFVVITGLSGSGKSSLAFDTIYAEGQRRFMETLSPYARQYIGSIERPDVDYIEGLSPVISIDQKSTNRSPRSTVGTITEIHDFIRLLYAKAGRRYDPVTGAMLQQQSEESIGEAILALPQGTKIQILSPLVTGRKGHYRELFERLLLKGFLRVRIDGKYREMEKEMQIERYKSHSIELVVDRLVISPDCEDRLRDAISMAITMSEHRSTVICDPMESQLKELTFSTRYAYSDGSVPVDTLAPNHFSFNSPYGACPECNGLGELMQLSGELMTPDLTLSLNDGGLDPFGKSGKRNLWQVIRAIAREFNFTLDTPLTDIPQEAMKILLEGSGTRTFDVSYSYSGHDTLYPQPFPGALPYVEEILKNASSSKIREWAENYMLRKPCPSCKGARLRKESLLVKINEINIAQAESLTLPESLAFFKALPGNLSTKEQLVATPILHEIVKRLEFLLNVGLSYLSIDRSSQTLSGGEAQRIRLASQLGSQLSGVLYVLDEPSIGLHQRDNHKLITSLKRLRDLGNTVLVVEHDKETMLEADEIIDLGPGAGEYGGEIVAQGAAATLDPNSLTAGYLNGERQVYCKKEEKTDPEEQQFLRLKGCRGNNLKNIDITIPLRSLVSITGVSGSGKSTIINETLYPILARHFYRSKLHTYPYDSIEGIKQLDKVVNVDQSPIGRTPRSNPATYTGAFTFIRDFFTRMPEAQIRGYKAGRFSFNVKGGRCEVCQGAGTRKIEMNFLPDVYVQCENCKGERYNRETLLVKYRGKSIADVLEMTITEAAEFFTDFPRILRILTTMQSVGLGYLKLGQPSPMLSGGEAQRIKLSAELAKIQTGNTLYILDEPTTGLHFQDIQHLLEVLRKLVDKGNSVIIIEHNLDIIKNSDWIIDIGPEGGNEGGNIIAEGTPEQIAQTEHSYTGQFLKAEMGIV
>NC_011060.1|WP_012507422.1|601744_602998_+|MFS-transporter
MEGFVQKGEHASIRDVFSLPVIVAALGYFVDIYDLVLFSIVRVPSLKSFGLSGKELIDYGVYLLNMQMIGMLVGGILWGWLGDRKGRLKIMFASILLYSLANIANGFVSSLPAYAVLRFVAGVGLAGELGAGITLVSEVLHTRIRGYGTMLVASIGVSGAILANIVANTYEWHNAFFIGGGLGLLLLVARVRVAESGMFKAMEAKSGMSRGNMLALFTDRGRFFRYINSIMIGVPIWFVVGVLITFSPEFGVELGISGPVSAGNAVMYCYLGLVFGDLSSGLLSQLLQSRKKVILLFMLLTVGAVALYFLQGHQSPQFFYVVCAVLGFAGGYWAIFVTVAAEQFGTNLRATVATTVPNLVRGMVVPITMLFQFFRGLFGLESGALLVGAICVTAAFLSLSALEETFHKDLDYYEEFL
>NC_011060.1|WP_012507421.1|601034_601625_+|UpxY-family-transcription-antiterminator
MDDVRNLLWYAVYVRSRYEKKVYQLLLEQGVVSFLPLLDTWKQWSDRKKRVSEPLFRGYVFVNIDLVREKIRVLDTEGVVKFIGIGRVPSVIVQRDIDWLKQLVREPDAIHRHVVSLPAGQRVKVLAGPFKDFEGVVVKQGRESRLVVFFESIMQGVEVTIFPDVLAPIAVAPSPVQGVAPLSGKLASVEKHLLRL
>NC_011060.1|WP_012507432.1|652081_652864_+|glycosyltransferase
MQKKTLTVIIPSRFQPKQLSFLEKAVQSIKKQTAIDNYDLTVLVSVDKGKMLEKNAIEQLKVRCIESSGGSQASALNAAIDLVDTQFAAFLEDDDEWYPKYLEAAAQAILFAPFVSSTQLEYDENNVLLRINDFPTPSGWFMSSDVLKSVGKFNEEYRFHLDNEWLGRLSLAKVSRIHLVEATAPVDARYIAAVRPWLDNVLKSSKGSVRLARHSEALPLVRRLRHSEAGMEKIATLPDYRARSQSECRSLVERFGRIPW
>NC_011060.1|WP_012507433.1|653068_653818_+|FkbM-family-methyltransferase
MQKQIVLSVNPDRLAHFFRLIKPVTTNHPLIRIGGEFDGGYLIPDDLDKIKVCFSPGVSTIVDFELDLVKRGITCFLADYSVEAPPVQNKLFHFEKKYLGPSETSTDMTLENWVKKSAPNQTDYILQMDIEGGEYGVIFDTSSEILRKFRIMVIEFHSMYALIDKFGWELINLAFTKILKDFKIVHIHPNNCCRSIVYNKFEIPPVVEFTFLRKDRITEMEPSLFFPHPSDRKNVPENNDLLLPSCWYK
>NC_011060.1|WP_049759881.1|654315_654807_+|hypothetical-protein
MNLNLDDRLAMDAVEVMESALDSGSDLVGGDWKICYSQEETDAVASSFPASELPFIPAWPPAGDLTRLGSGTGSRGTLGPACMWRTHLHKTLARYPYQFGDGTLIRVIGDAVWWRLLVQNKKKMQRVASIIGNYNSHQHDQAEFRNSAQSEEQRLKLIGVRLL
>NC_011060.1|WP_012507435.1|655352_658637_+|tetratricopeptide-repeat-protein
MNDIRMSCKPEHLVVKREVSKEDTAFVLRSAFLLHQQGRLEEAEALYREIVQSDPEHFEALRLLAIIAVQKKRFEDSLVLFDHALKINPRHAATLNNQGVVYEELHRFDEALCSYEHALAVKPDYAEASLNRGVMLQELGRFDEAVLSYDHALTNDADNARIWFHRGNVLQDLKRYGEAVFSFEKALAINPDYAIAYANLGNVLQDLKRYEEAVLSYDRAIAVNPDSVRAYVNRGIALQELKRYEEAVFSFEKACAINPDYAIAYANLGNVLQYLKRYGEAVLSYDKAIALKPDYAEAHSDRGVALQGLQLYEEALLSYDRALLVRPDYAEACYNRGVVLQKLKRHVEALASYEQALALKPDYDFLSGMCLNIKMQMCDWRDFECQLSRLFQKIERSEKVAVPFSFLSISDSLLLQKKVAMISVGESCFSPQVPSAISKRSRHEKIRIGYYSADFHDHATAYLMAELFERHDRSQFELFAFSFGPDRQDKMRKRVAAAFDHFFDVRTRSDAEIVLFSRDLEIDIAIDLKGFTQGFRRGIFALRAAPIQVSYLGYPGTMGVGYIDYLIADSMLIPEGSRKYYTEKIVYLPDSYQVNDTKRVIAEKLFTRKECGLPEQGFVFACFNNNNKITPATFDGWMRILGQVEGSVLWLLEDNVAAADNLRNEAMQRGVDAARLVFAKRMPLAEHLARQRLGDLFLDTFPCNAHTTASDALWAGLPLLTLLGESFAGRVAASLLNAMQLPELITSKQEEYEALAIELASNPAKLGNIRRKLEQNRLATPLFDTKRFTRHIEQAYCMMYERYQQELPPDHLFSLPSAQGSTGTISQLQQEYACCPLCGCKNSLYGRADCSRHTLWHEPLPRILEWMRCPGCHHVYTRHFWTQAGIDELFRNAQQNQLAGFGASQDAKRANWVPVVDRVLNLLGGYRSIMDNGSHPTWVDVGCGDGALVMTAGDFGFTALGLDARSEAVRRIIELGFKAEEGDFMQCTFERKLDVLSMMDVLEHMPYPGLALGKAAELVRPGGVLVISLPDLSCSSWRMMDAAKCNPYWMEIEHYHNFSRERLIALLGERGFDVADFGIPNRYKAQMELYAVRK
>NC_011060.1|WP_012507436.1|658935_659619_+|DUF1566-domain-containing-protein
MMITPFTVMSSKYNGVMVQGAVVGGMTNWSGGDLLRTGEKRRGFRHETEKKDGRVQCGSAHSGEDGVYAIMKLFAFIILLTLLLTGAWLVAASASSQAVVMVGRDSFGDGGVATIAKPGQQPGNRVTVQHGLIAAEEDLPGFFSWAEARVSCDSLTLHGYDDWYLPDKDELNRLFFSKGAVGGFLDTLYWNSTSSDAQEAWSQDFFGGTQNSVKKSATLRVRPVRKF
>NC_011060.1|WP_012507437.1|659917_660415_+|DUF1566-domain-containing-protein
MEHFFGKFGIRLFTALLLWGLGVLAVSEVSFAAPKVGDEYGGGKVVYILQPGDPGYVAGEEHGMVAAKEDLPQESLSWAEAKAAAERLELSGYKGWSLPTQQELSLLYKNQAIVGGFRDYSYYWSGSEVDNQKAWALDFYNGEKVLSVKSGALTGIRRIRAIRKF
>NC_011060.1|WP_012507438.1|660681_661224_+|hydrolase
MLSSRETLLLVIDVQGRLAQSVVQPAALETNISKLVRACLILDVPVLVTEQYPKGLGSTVDTLKELLPGMVPVEKLSFSCCGTPEFMKQLRSFNRNDILVVGMEAHVCVYQTAVDLVEFGYNVHLVTDAVSSRTEANRLLGIRCIEKAGASLTSTEMAVFELLRVAEGERFKAISKIIKE
>NC_011060.1|WP_012507439.1|661278_662346_-|tetraacyldisaccharide-4'-kinase
MHNPLSILLRPAALGYRVIVQLRNTLFDRQLLPAWKSPVPIVSIGNLSVGGTGKTPLVDWVVKYYLSIGCKPAIISRGYRRESKGVQLVSDGQKVLLSSSESGDETAMLAWNNPDAIVIVAKKRKEAVKYLVKHFAARMPSVIILDDAFQHRQIQRELNIAIINVSEPFLKARMLPEGRMREPLKNLSRADLIVLNKIDDPEKADAIVRKIKERGTPLIKARVAIAELVCFSGAFISSEEAPPLTSISALAFAGISSPQSFLDSLGKEGVTIAAHRFFYDHEPYSAKKLTEIFREAESKGLSLITTEKDYFRMLGHPELIRIITARPCYYLKIKTDIFEGKEILQSMLRKAVAMK
>NC_011060.1|WP_012507440.1|662338_662950_-|DUF374-domain-containing-protein
MPLSPLISRHLIPFALKLLYASLRISVIPKIIQLPDKEVIITFWHGKMITGWLLAQRLFPEKKITAVVSMSEDGKTLADTLERLGFSLIRGSSSKGGAAVKQAMQKALQNGNIVALTPDGPRGPANQFKYGTLRLASENHYPLVFAEIRHKKSWTLKSWDQFEIPKPFSETSVQLHLIHLPAFENEAEIESYTKQLAIQLHHA
>NC_011060.1|WP_012507441.1|663126_664407_+|phosphoribosylamine--glycine-ligase
MNVLIIGSGAREHAMCQCAVESEGVQRVFVAPGNGGTAMMGGPVCNVPLKVTALDDLLRFAEENAIDLTVVGSEAPLELGIVDLFRRAGKKIVGPAQEAASLESSKVFAKEFMRRHGIPTAGYHVFHDALSANAYIGLPETLFPQVIKASGLCAGKGVFIALDREQAMMANNALFEERIFGDAANEVVIEDFLQGEEASVFALTDGTRYRLFLPAQDHKRIGDGDTGKNTGGMGAYAPAPLVTSEVMQKVEERIIQPTLKGMRDDGYPYTGFLYVGLMIDRGEPFVVEYNARMGDPETQVVLPLLKSDFIAALQASVDGTLGEVPFEMYQKSAATVVIASAGYPDHYETGKAVALADELSAMKDCQVFHAGTAYEGGRLVTAGGRVFSVTALGDTLRESIDRAYSAVEKISFEGAYYRTDIGAKAL

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Crispr_ID: NC_011060_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011060_3

1177565-1177651

Orphan

Consensus_repeat	Method
TTCGGGAGTCGCTGTCTCCCGAAT	CRISPRCasFinder

1 spacers

PD-DExK

The CRISPR arrays of NC_011060_3

>merge|NC_011060|3|1177565-1177651|CRISPRCasFinder
TTCGGGAGTCGCTGTCTCCCGAATTGATAAGCAAGCTTTTGCCATTCGCGACCACGGTCAACTTTCGGGAGTCACTGTCTCCCGAAT

>NC_011060|3|2|1177565-1177651|CRISPRCasFinder
TTCGGGAGTCGCTGTCTCCCGAAT	TGATAAGCAAGCTTTTGCCATTCGCGACCACGGTCAACT
TTCGGGAGTCACTGTCTCCCGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011060.1\|WP_041526721.1\|1193020_1193875_+\|bifunctional-methionine-sulfoxide-reductase-B/A-protein	unknown	unknown	gnl\|CDD\|235499
NC_011060.1\|WP_012507900.1\|1170083_1171307_+\|DUF1016-family-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|377634
NC_011060.1\|WP_012507903.1\|1178981_1179581_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131694
NC_011060.1\|WP_012507909.1\|1194038_1194716_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|237297
NC_011060.1\|WP_049759897.1\|1181056_1181314_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|334163
NC_011060.1\|WP_012507898.1\|1167394_1168153_+\|DUF4391-domain-containing-protein	unknown	unknown	gnl\|CDD\|379562
NC_011060.1\|WP_190274029.1\|1174603_1175449_+\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NC_011060.1\|WP_012507904.1\|1179577_1180921_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NC_011060.1\|WP_012507894.1\|1158044_1161554_+\|DUF3883-domain-containing-protein	unknown	unknown	gnl\|CDD\|350769
NC_011060.1\|WP_012507895.1\|1161567_1162752_+\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225420
NC_011060.1\|WP_041526719.1\|1168173_1170081_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|225100
NC_011060.1\|WP_012507901.1\|1171303_1174279_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|226115
NC_011060.1\|WP_012507911.1\|1195537_1196167_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|132997
NC_011060.1\|WP_012507897.1\|1164203_1167398_+\|helicase	unknown	unknown	gnl\|CDD\|350769
NC_011060.1\|WP_012507906.1\|1182929_1184276_+\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_041526720.1\|1190553_1192719_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224250
NC_011060.1\|WP_012507896.1\|1162748_1163732_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_011060.1\|WP_012507902.1\|1175604_1176726_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224268
NC_011060.1\|WP_012507905.1\|1182681_1182930_+\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012507910.1\|1194984_1195530_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|129813

Protein	Function_ID	Function_description	E-value
NC_011060.1\|WP_041526721.1\|1193020_1193875_+\|bifunctional-methionine-sulfoxide-reductase-B/A-protein	gnl\|CDD\|235499	PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional.	0
NC_011060.1\|WP_012507900.1\|1170083_1171307_+\|DUF1016-family-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	8.68715e-77
NC_011060.1\|WP_012507903.1\|1178981_1179581_-\|hypothetical-protein	gnl\|CDD\|131694	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein. Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins. [Hypothetical proteins, Conserved].	4.81238e-07
NC_011060.1\|WP_012507909.1\|1194038_1194716_-\|peroxiredoxin	gnl\|CDD\|237297	PRK13189, PRK13189, peroxiredoxin; Provisional.	7.39785e-148
NC_011060.1\|WP_049759897.1\|1181056_1181314_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|334163	pfam00589, Phage_integrase, Phage integrase family. Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase are Arg-173, His-289, Arg-292 and Tyr-324.	7.78518e-13
NC_011060.1\|WP_012507898.1\|1167394_1168153_+\|DUF4391-domain-containing-protein	gnl\|CDD\|379562	pfam14335, DUF4391, Domain of unknown function (DUF4391). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 220 and 257 amino acids in length.	9.01001e-78
NC_011060.1\|WP_190274029.1\|1174603_1175449_+\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	3.95382e-06
NC_011060.1\|WP_012507904.1\|1179577_1180921_-\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	2.82987e-24
NC_011060.1\|WP_012507894.1\|1158044_1161554_+\|DUF3883-domain-containing-protein	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.15163e-73
NC_011060.1\|WP_012507895.1\|1161567_1162752_+\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	2.88112e-55
NC_011060.1\|WP_041526719.1\|1168173_1170081_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	3.3121e-38
NC_011060.1\|WP_012507901.1\|1171303_1174279_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|226115	COG3587, COG3587, Restriction endonuclease [Defense mechanisms].	0
NC_011060.1\|WP_012507911.1\|1195537_1196167_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	7.4433e-31
NC_011060.1\|WP_012507897.1\|1164203_1167398_+\|helicase	gnl\|CDD\|350769	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.9125e-46
NC_011060.1\|WP_041526720.1\|1190553_1192719_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|224250	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones].	0
NC_011060.1\|WP_012507896.1\|1162748_1163732_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	4.71036e-30
NC_011060.1\|WP_012507902.1\|1175604_1176726_+\|hypothetical-protein	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	6.46968e-05
NC_011060.1\|WP_012507910.1\|1194984_1195530_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|129813	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions. [Hypothetical proteins, Conserved].	6.25963e-58

>NC_011060.1|WP_012507902.1|1175604_1176726_+|hypothetical-protein
MTKDSSWATAALLKAKLTPHAQTLFATRSLHYHEEKEHIAEQFAQLLLRRCKRLIEDRDEPARVLLIMDAGTTLYPFFENIGRECVRSYNNRESWVDHFSIVTNNLAGIDSLMEHACISRESRYAPLAVECHCLPGHPMPIFSGVAGIKTIHAIKSLRTDYANHEFDRIDNVSATTTDVHRRLLIIILTTGNWLRIRRHDPPCPVPLARTSEHFQVKQELINICDEAYIIAPLGKVLFNCAPNEINNALGYDDTQASPDKEPYSEITVTDDQAKRIKLVTTSRIERRLLFPLSQKLKAVLEYVEAHNYDDVINKPIEVMPHVFIPFDRLPNNRWLELEEEFPHRNTRGESFLERFYDIHISNWSAHHGTEENV
>NC_011060.1|WP_190274029.1|1174603_1175449_+|toll/interleukin-1-receptor-domain-containing-protein
MVRTLREEIGQSQFLIVICSPDSAKSEWVEMEVSHFLTLRGHEFVIPVIIKGTPYAKDAVDECLPLSLLRTEVDLLGISFAGQSKEQVLLKTVSALLDIKYDSLYDRHRRRQRRQRMVAATVATVMFVIVLTAALFSIMQWNRAEQRRAEAEQLLNYLLLDLHPKLQQFGRLDILESVAEQSREYIDYISTDVRDPIDAIQAISLRRNMAEVYQSVGKLENAETLHLKNISVLKKLEQIDPKVGIIHLLKGEEHQALASIRKTEGRFQDALHETPMKEKLK
>NC_011060.1|WP_012507901.1|1171303_1174279_+|DEAD/DEAH-box-helicase-family-protein
MKLHFEPNLDYQLQAVEAVCDLFRGQEICRTEFTVTMPTTKDMQFPGMESDLGIGNRLTLLDDDLLKSLHDIQLRNGLPPSGTLASGDFTVEMETGTGKTYVYLRTIFELNKRYGFTKFVIVVPSVAIKEGVYKTLQITEDHFKGLYAGVPFEYFLYDSSKLGQVRNFATSSQIQIMVMTVGAINKKDVNNIYGKGANESTGGEKPIDLVKAVRPILIIDEPQSVDGGLSGAGKTALDAMSPLCTLRYSATHVDKHQMVYRLDAVDAHDKGLVKQIEIAAATVEDAFNKPYVRLLKVENKRGRISALVELDKMTASGVRRKESVVVDGDNLEMVTGRAIYADCSIGEIRVEKGKEFMELRFPGGEQFLKPGEAYGDVDALAVQRQMIRRTIKEHLDKELRLRPQGIKVLSLFFIDEVAKYRSYDSDGNSVKGDYARIFEEEYRRAAKLPDYFTLFSEVDLTHAPEEVHNGYFSIDKKGGWTNTEENNQGNRESAERAYNLIMKEKEKLLSLETPLKFIFSHSALKEGWDNPNVFQICALREMGSERERRQTIGRGLRLCVNQHGLRLRGFEVNTLTVIATESYEQFAENLQREIEAETGIRFGIVEEHQFAAISVTTDEGVSVPLGFEQSKLLWEHLKEQNYIDSKGKVQDSLKSALKEGTLLVPEQFRPQLDQITAVLKKLAGRLEIKNANERRQVHTRQAVLHSPEFKELWERIKHKTTYRVEFDNEKLVESCIKALQNAPAILKTRMQWHKAEIVIGKSGVEATERSGAATVVLDENDIELPDLLTDLQDRTRLTRRTIHRILIGSERLDDFKRNPQQFIELAAEAIKRCKQLAVVDGIKYHRLGDEHFYAQELFEQQELTGYLKNLIPVQKSVYEQVVYDSDPEATFADQLEKNLAIKVYAKLPGWFRIPTPLDTYNPDWAVLVEKDGEERIYFVVETKSSLFTDDLRDKESAKIECGKAHFKALSICETPARYVVARSLDDVLNRV
>NC_011060.1|WP_012507900.1|1170083_1171307_+|DUF1016-family-protein
MATKKQSIDQADDLMGRVILILDQARANVVRAVNSNMVIAYWLVGREIVLEMQQGEERAGYRETLLRKLSEGLTARYGKGFSNSNLKYFRQFYRVYADRVPAIGHLSSGQFDTIGFGVSEIGHKPCGQLDVKSGLDTTTSGEGLINDLSFAADSQKLLGFSASVSWSHYRALLKVENRNERLFYEIETEKEGWDVSHLEKQIHSFLFARLLKSRDKEGVFRLASEGQVVSNPIDVIKQPYILDFLGLPELSCFQESDLESAIIEHLQPFLLELGKGFAFVARQHRVTTESHHFYIDLVFYNYLLKCFVLIDLKIGKLTHQDIGQMEMYTRMFDELRRSDSDNPTVGLILCAEHDEVVARYSVLNEYKQLFASRYMLFLPTEEELQRELARERGLIEARKRARKEGQE
>NC_011060.1|WP_041526719.1|1168173_1170081_+|site-specific-DNA-methyltransferase
MKPLTANDPEAQSADILAGNIEQLKTLFPEAFTEGKIDFEVLRQLLGGTVEEREEKYGLNWHGKRKARQLALTPSTGTLRPCPEESVDWETTKNLMIEGDNLEVLKLLQKSYSGKVKLIYIDPPYNTGKDFVYPDNFQDNIKNYLELTGQIEGGRKISSNTEASGRFHTDWLNMMYPRLKLARNLLREDGVIFISIDDGELDNLRKLCAEVFGDENFVVQIIWRKRSTPPNDKIIGANHDYILCFAKNAISVKLQHRERSADQIARYKNPDNHAKGPWAPGDLMANIKGGRFVKSLNFPIVNPQTGEEHFPGNNGNWRFSRETIATLLANNEIYFGENGRGKPKLKRFLCEVKEGVTYPSIWDFVPLNTSGSNEMGAIFGNPTIFESPKPVGLIQELVALGCEPNGVVLDFFAGSGTTGHALMAQNVIDGGNRRYILVQLPEQLYLENNEQRVSGDYCDQIGKPRTIVELTKERLRRAARKIKDENPLFPGDFGFRVFKLDSSNINTWEPDRDNLELTLLNSIEHLKGDRTEADIFYELLLKLGLDLCVPIEKRTFAGKEVHSVGGGVLLVCLATHITPDEVEPLAQGIVAWHKELAPAGETTSVFRDSAFADDVAKTNLAAILQQHGLEIIRSL
>NC_011060.1|WP_012507898.1|1167394_1168153_+|DUF4391-domain-containing-protein
MKSQALIAAFDLPESSLVNQRVPRKLLLENGAPTSADKRSINEGIEELIWIAALKPVTVGVPEFRDESHEYLEIAVLLLTLRDGAKTTRLVELVHRAIPYPVLLLTQQGAPLSLSVAHKRWSQSEAGKTVLEGDIVSVAWSREVDADIMADFRNSLALGSQPRTNLHALYQGWLDSMVALNAARVTGNFTLAENAEYAAARRDALRECGVLQEEIGRLRTLAAKERQIPRQVELNLELKRIDAELATTKQKL
>NC_011060.1|WP_012507897.1|1164203_1167398_+|helicase
MKLVQNSGTDRVIDYLRSKLTAGCQFDMVTPSFSLFAFSGMLQEMVALLTCRLLLPSTITELSILGSEADRAARNRLQNRWIASRLLQWLQSKSEVKLAPGAVPQGALVVRDGDAVPEQVLLGSLAFTTDGLGLTPGNPLNLIQASETPEEALLLSKWFDAQWSGLAENPKAKTELIGLIQSLASHREPFLVYSLILYTIFSDRNEDLDEERIVKSATGIRNTVVWKKLYRFQRDGVVGALDKLNRFGGCIIADSVGLGKTFEALAIIKYHELRNDRVLVLCPKRLRDNWTLYKANDRRNFLAPDRFNYDVLNHTDLSRDGGFSGDIDLSHVNWGNYDLVVIDESHNFRNKAANKGKETRYDHLMRKIIKEGVKTRVLMLSATPVNNRLADLRNQIAFATEGNDTALLAHGISSIDSTTRLAQKQFNRWLDLDEAERIPVRLIEMLGFDYFTLLDLLTIARSRKHVEKYYGISETGRFPDRLKPINIQADVDRAGEFRPIREINQEIRRLNLASYAPLRYVLPHKQEAYDRKYSTRVRGGEGFFRQADREESLIHLLRINMLKRMESAVPSFALTVQRQLRDVQSMLERIEAKTSELEEIDIADIDLDDPAFESLLVGRKVKVLLQDVDLIKWKQELIEDRNRLATLFAAAAQVDAERDAKLAALRDVIAGKCRNPINPGNRKIIVFTAFTDTARYLYEQLAPWAKSELHLESALIAGSGSNQTTISGLRKDQSTLLSAFAPRSKERPESLAIEGTIDLLIATDCISEGQNLQDCDWLINYDIHWNPVRIIQRFGRIDRIGSPNSCIQLVNFWPNMELEEYINLEQRVSGKMVLLDISATGEENLIEQQSGNQMNDLEYRRKQLLKLQETVIDLEDLSSGVSIADLTLTDIRLDLAQYLKANPGILETIPPGSFAVTTTAEADIAPGIIFCLRAEGEAARRIPEAGYPLGTHYLVHVGDDGSVILPYTQAKQILDRLKRLCLGRDMADAGACARYDKATKQGEEMLAAQRLLAAAVASVAGKNQERAVASLFTPGGTHAMKGEFAGINDFEVMAYLVILPEATV
>NC_011060.1|WP_012507896.1|1162748_1163732_+|ParA-family-protein
MKTIAFFNNKGGVGKTSLVYHLAWMFADHGIKTLAVDLDPQANLTAMFLDENRLEQLWPDDEHPDTVYGSIRPILRGTGDIAQPSVEMITETLGLIPGDLGLSRFEDKLSDAWPRCHNRDESAFRTMTAFHRLVQRGSEWGAELVLIDVGPNLGAINRSALIASDQVCLPLAPDLFSLQGLKNLGPTLREWRTVWAELLAKAPADLPMPRGAMQPVGYIVMQHGILDTRPVKAYKRWMDKIPKVYREAVLNEPIISLPPVAQDPYCLSLLKHYRSLMPMAMEARKPIFFLKSADGAIGAHIEAVRSCYSDFQNLAAKIAAAAGIAFQ
>NC_011060.1|WP_012507895.1|1161567_1162752_+|putative-DNA-binding-domain-containing-protein
MLSEDQLKVLLTDMEADTIERTTAVSDTDKFSQAICAFANDLPNHRNPGYLLIGVTDKGVLSGLTVTDELLKNLGGIRSQGNVLPQPYMTVARFALSGGDVAVVEVHPCDLPPVRYKGRVYIRVGPRKGIANEQEERVLTERRVALARSFDARPCSEATIEDIALGQFDAYRREAVDPETIAANNRNIELQLASLRLYDPKPACPTYGGILLFGKNPRFFLPGAYVQYLKLPGTDLTEQPDDQSEISGDLHTLLRELEGRIKLLIQTTMRKVTAFEEKLQPDYPEWALRELLMNAVMHRNYDSNSPIRFYAFIDHLEIQSPGGLYGEATPENFPTRNSYRNPVIAEAMKSLGFVNRFGYGVQRAQALLVQNGNPPAQFEFDEHSVLVKIFRRLT
>NC_011060.1|WP_012507894.1|1158044_1161554_+|DUF3883-domain-containing-protein
MRIEDIIQGSSLTGLEPSAVATVIAVVPIADGAVRVIYQTPDGTLKERLLGRTDEASIAVAISERPWSFDGDGEAFKLTVEAKRIDLAFLFDPMMAVHTSNVEPLPHQITAVYEAMLPRQPLRFVLADDPGAGKTIMAGLYIRELIMRADARRIVIVAPGSLVEQWREELFEKFGLEFRVFTRDLEAATPSGNPFEDIDHLIVRLDQMARNEELQEKLCAAGWDLVVFDEAHKLAAHFFGNKMQKTGRFKLAEKLGAQTRHLLLMTATPHSGKEEDFQLFLSLLDSDRFYGKFRDGVHKVDCSDLIRRMVKEKLVKFDGTPLFPERKAYTVNYQLSDLEAALYEAVTDYVKTEMGKADQLDGKRKGSVGFALTSLQRRLASSPEAIFQSLKRRRERLERRLREEKIGARGQKLLAETLIDVPEDEDDFNAEEQETMEETLVVQATASQTIAELDGEIFILQALEQQAKGLVASGKDRKWDELSRILQNEPQMRDAGGRMRKIIIFSEHRDTLNYLHEKIAGVLGSHDAIVVIHGAVHRDDRRKSQELFRSDPEIRVLVATDAAGEGINLQNANLMVNYDLPWNPNRLEQRFGRIHRIGQQEVCHLWNLVAKETREGDVYFRLLEKLQVVSEALKGEVFNVLGEVFDGISLKDLLMQAIRYGDKPEVRARLSQKIDIALDLDHLKEILKRDALAQESFSAERLFAVKEEMEKAEARRLQPFFVRSFFMKGFESLGGSIYPRESGRFEITNVPAELRERDRLITGRNRRDLAPVLRRYERVCFTKESVRPVDKPGLAFANMIHPGHPLMLALSDLLLEQHANLLRQGTILVDPADDGDQPSLLFLLTHEVKSGDGMVISKRLQFVRVLPDGSTTFAGWAPHLDLEPLASAQRPLLTETLAAPWLNSGLENRALALAASTLVPQHFSEVADRRIAHIDKTLAAVHERLTKEINFWSDRFEKLTDDKKAGKDVRLNLENVRRTLSDLEARLEHRKKELLSMRHVSSATPVLLSGALVIPAGLLRFLQGESASCGSTFSADPAARSRIEQLAMQAVRQSEESRGCRVVDVSTQKCGWDITSYPPAIDGKQPESRHIEVKGRIKGATTITVTRNEMLYALNQAEKFVLAIVQVDENEQIDGPYYLRNPFDAEPGWGVSSINFEISEFLKKAEINL
>NC_011060.1|WP_012507903.1|1178981_1179581_-|hypothetical-protein
MIHVDAQTEPDSFNSNVRQKGLARLIEKNIPLDKPLPPKTDVEPYWRFCLDDLHTTYNGCCAYLAVFFERVTGGGSVDHFIAKSKRADLAYEWSNYRLTCSRMNSRKREYDDVLDPFEIENGWFRLEPITGRIYPNPILTPDQQRTVQASIERLNLDDAGCREIRARHYQDYCEGEYTAEFLRKRSPFVWLEAQRQGLL
>NC_011060.1|WP_012507904.1|1179577_1180921_-|AAA-family-ATPase
MIKHLKMTNVGPAPKMELEFGKRLNVITGDNGLGKSFLLDIAWWAMTRKWPAELNPKLTSGKVALPTDKKHEAEIDFSFSAVSKTKGFISTFEPRGQSWTVQKGRPANPGLVFYAMADGSFAVWDPARNYWKSKNPDENKERPAAYVFSPKDVWDGLQNQDGTWLCNGLIRDWAGWQKEKGRAFESLISVLDVLSPSSTEKIVTGSLTRISLDDVRDMPTLKMPYDQEVAVVHASSGMRRIISLAYFLVWCWEEHVKAKELLGEEPETNTVFLIDEVESHLHPKWQRTVIPSLMKVIKQLTKSPDILLIDDTDPVHPHHTLMISDVQLIAVTHSPLIMASVEPLFDENQDAWFDLDLVGNNVELTHRQFVRQGDVRSWLTSEAFNLKSGYSIEAETVLEEAALALSNEQFSKDDALSLEQRLRAVLSDTDPFWMRWRFVAEKKGWSL
>NC_011060.1|WP_049759897.1|1181056_1181314_-|tyrosine-type-recombinase/integrase
MLKPLDPHAVYACIIRKYGKETGINASVNGFCVHSLRSTAATNALENGADIGKVQKLGHANVSTTRLYDRRKSRPEESPTFRVKY
>NC_011060.1|WP_012507905.1|1182681_1182930_+|hypothetical-protein
MQENIYAICLDEELEANPDYWVIAEDYGSCPQAEAQSTLEVKEKYRVTRKSYSGIKCKSEKYAVDGSYSIGGVYILTKKENV
>NC_011060.1|WP_012507906.1|1182929_1184276_+|hypothetical-protein
MKRTIAIFPLLVLLSGCTGEQLVTRRFKSMQWNTKPPHELIELKAIHIDPPQTAPRHSAPAILSLSERGQASYIDVAKQLKDLKKSDDLLNLLAKPFPKNVHEAEDGSRVDLTTINKLIVLSVKKVDAVMLAPDDPVTAADRIAKLELTLECGADWYQLQNWDKLETDYVTIDLGKVSHESSASFNANLTPKLSGSIVGDGEIGVVRSDKSSEELALKTRSITVSGTLTPEKGVVIQQGGIDRDLEGNTSVVLTIKMGGKTVNLIEFGELIDDNGTSTKPADLSLKIIPTRIPYWYENTEGVILNASADYLFRHVSEGKESVIEGDDVVTLYKGVVTAQKQIELLSKSDCQKRSEYFLIKDSKGEVVLVKHDSDTYNLALASKEKWDAFFQWLMSLKPEQFSNCIGKGANRWCLMYKGQILRQDDVKHLGAYPMKSVGPPQNSENKAR
>NC_011060.1|WP_041526720.1|1190553_1192719_-|thioredoxin-domain-containing-protein
MTSPENKPNSLIAEKSPYLLQHALNPVAWLAWGEEAFKKARGENKPIFLSVGYSTCHWCHVMEDESFENPEIAKLLNAHFVPVKVDREELPDLDRLYMSYVQASTGRGGWPMSVWLTPELNPFYGGSYFPPEERYGMPGFKTILITITRYWENEREKIISESGSFFASLGAVSRTTPSSQPDAEMAQKKCFEWLEANYDPMFGGFGRAPKFPRPVLLNFLFNHAYHTGDKKALRMALHTLHKMAEGGIHDHLGIIGKGGGGFARYSTDQRWHVPHFEKMLYDNAQLAISCLEAFQCSGDNFYKRTAEDIFNYVLCDMRSPQGGFYSAEDADTLLTHGSEQKQEGALYLWSADEIRETLADEELATIFSFTYGIRDEGNAEYDPHGEFNGKNILMQQATDEECADTFGKTVEEIRAALDDARTKLYHARSRRPRAFLDDKILTAWNGLMISALAKGYQVLHNETFLAAAREAANFILETLYDQANGRLLRRYRDGNAAIAGKAEDYAFLVQGLTDLYEASSEVRYLQIALQLAEIQNTLFYDNAQGGYFSTAIDDHTVPLRIKEEYDGAEPSANSISTLNLLRLAEMTGNEDFVRRAEETIKSCRIMLAENSSALPQMLVAKNFAEQRKVHLVFSGPLDSSSMNELRQTVYEQYLPGATMSHASKESAHIFPSHAAIIAKEDGNAKVYICIDKSCQPPTENPERLAAMLDSQFLHRPDSITW
>NC_011060.1|WP_041526721.1|1193020_1193875_+|bifunctional-methionine-sulfoxide-reductase-B/A-protein
MHFNELTPEEERVIVYKGTERAFTGKYSESKERGTYLCRRCDAPLFRSTDKFESGTGWPSFDDALEGAVKQLPDADGRRTEIVCANCGAHLGHVFFGEEITAKNVRHCVNSISLGFLPEAKAASVTQKAIFAGGCFWGVEYHFNKLKGVLSAKSGYTGGLIDNPSYKQVCTGRTGHAEAVEIAYDPALVSYETLAKLFFEIHDPTELNRQGPDRGTQYRSAVFYTDEEQKKVTEKLIGELRAKGYKVVTTVEKAGTFWPAEEYHQDYYEKNGHEPYCHIYQKRF
>NC_011060.1|WP_012507909.1|1194038_1194716_-|peroxiredoxin
MSDLYDEQPFYSELNMPLLGDDFPELHVQTTHGPMNIPADLEGSWFVLFSHPADFTPVCTTEFLGFQERMADFEKLGCKLIGMSIDQIFSHIKWIEWIKDNMNIEITFPIVAANDKIAMQLGMLHPGKGSNTVRAVFIGDPKGKVRLILYYPQEIGRNIDEVVRAVKALQIADNKKVAIPANWPTNSLLKDQVIIPPANNIEDAKKRTGMKNCYDWWFCYKPLEE
>NC_011060.1|WP_012507910.1|1194984_1195530_-|TIGR00730-family-Rossman-fold-protein
MISSVTVYCSSSNLAPRDYFTAASDLGRAFAKRGIGLVFGGGRVGLMGCIADAVMEGGGTVKGIIPRFLEEREVAHYGLTELHVVETMHERKMKLAEWGDAYLVLPGGFGTLDELVEVITWKHLGHHNKPIILLNLNGFWNPLLLFFDRIAAEHMVSEEHGSYYSVCNTILEVLELLQEQA
>NC_011060.1|WP_012507911.1|1195537_1196167_-|glycosyltransferase-family-2-protein
MKGISRPDISIIMPTFNRANHLECAIHSVLAQSFSNWELIIVDDGSNDNTFEKLDPFILKFPNIRYMKQSNRKAALARNTGIQASFGRYITFLDSDDHYLKNHLETRITLIEEMQDVSMLSGGFLCDETITVKDCYHPDSLVGIRECILCGTLFGKRELFFALDGFSDMEYAEDTDLWERASRLFSLKKIEEPKTYVYQRASDSITLNR

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Crispr_ID: NC_011060_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011060_4

1762054-1768383

TypeI

I-C

Consensus_repeat	Method
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	PILER-CR
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CRT

95 spacers

cas2,cas1,cas4,cas7b,cas8c,cas5,cas3,cas3HD,DEDDh

The CRISPR arrays of NC_011060_4

>merge|NC_011060|4|1762054-1768383|PILER-CR,CRISPRCasFinder,CRT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTTCTGCAGCAGTTGATGGTTGGATGGGTATGTCAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAAAATCGGCTTCGGCGCCTGCAAGGCTCTCATAGGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACGTCAAAATATCATCAGTCGGTAGGCATACGAGAATGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGGTTTCCGGCAATGCACGACGGACGGGGCAGATCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACATGAAGAGGTATTATCAGGAATGCATGGTTCAGTACGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGCTCTTTGTGTACGTATTGTTGCAGTTGCTACAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTCAATCTGCTACGCAACTCCTTTTTCAGAGTGTCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAACCTTATCAATACGACAAGCTTATTAGCAAAATGTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCTATCATTGTGCCGCTTTGAGCAACGATAGTGCCTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCAATCATACTATCTCCTGTTGTTTGTGCGGGGTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCGAGATTGCGCAGGCGGCAAATGGTGATCTTGGAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCATTGTAGTGGTGTTTTATGGTTTTAACAACTCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAGTTGTCGCTAATTCAGGGGCGCAGAATATCCCGGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCAGTCGAATAAGTCGCGAGATATGTCAATCCACTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGTTACTTGCGCAGATGCTTGCGTAAAAGGTGATGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAGATACCGCTTGGCCCTGCGGTTCAGTCCATCAACGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTTTTGTTCCCTGATAGGTTACCTGATTCGGTGATGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTATCGATACGGAAAAGCAAGAACGTGCGGATTTTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCGCGTTTTATTGGGAAGTGTATCGGTTATGGCTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCAACAATTGCCGCAAAATCAACAATAGTTATCTGTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTTCTCAGCAATGCTCTTTTTGACAAGATCACGCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTTTTCTCGGCAGCTTGAGCTGATTGAGGCAGGAGGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGTTACTTGCGCAGATGCTTGCGTAAAAGGTGATAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCAAGTGTCGCAAAATCTCCGCTCATTTTATCCCTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACGATTATTCGTTTGGAAAAGTATTGAAACGGATGTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTACAGAAGGGGGGACAAGAAAAGACCTGTCCCCTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACGCGCGTAACTGTAAACTCTTTTCCGCACTCCTCACGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAGGGGTACAGCATATTTATGCCCTGGAGGCGTCATGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTTTTGTAATCACCTCGGCTATAGATTGGAGTCCAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACACATTAAAGGCGTAAAGCATGTAGATATTTTTAAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTCGGCAAACTGATAACAAAATACGACATCCAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACGACTCGATACATGAAATATGGGATATCATGAAAAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAATTATTTGGCCGTCATCCCTTTTTTGGGAATCAATGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCATTATAGTTCCCCTTGTTTTTTGCTTATGTAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGTCAATCGCTTTTGTATCTCATCTTCCTTTAGGTCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGCCTTCTGTGCGGGAAAATGGCAACAATGGTGTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCGGTACATACTTTTTGAGTGTATCGACCTGCAATGGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAAATAACATTATCTGTTCTGTATACAGACCTTTAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGCATCAATCACACCGGCATAATAAAGAGGTCTAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACACCGCTCTCATATCTCTATGAACTAAGCAAAGGAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACATATTTGGCTTTGCCGGTGTATGGTTTTGCATAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACATCTTTTGCCGACGAGGAGCAGACGTCCCCTGCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTTCCACATGTGCGACGACGGAAAAGCCTCTCTATGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACACCTGCGGGCATTCTCATGCAACAAAAGGATTTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACGCGTTCAGCCCTACCATCTTTGCGCTGGAATGCAATGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCGCGCGTCATCCCAACTCTCCTGCATGTCATCAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACGCAATGGTTACCAAGCTCCATATAGTCGTTTGGTGGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACGTGTGTGGTCATAATGCCGTTTTCCATCAACCACGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAGCACTTCCGCTGCCCGTTCAATTGTCATCTCACTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTTGCTGATGGTGAGGGCGCACCAGAAGTTTACAGGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCATAATCACTCCTGTTTGATTTTTGCCATTCTGATAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAAAATACGGGGCCTTGGTTATGATCCTTGGGGTTCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTTGCCGAGTATGATGCAAAACGGGGAGGTACAGGTCGCACCCCCTGCGGGCGCGTGGATTGAAACTGCTTGGATTGTCGTAACTGACCCATCAGGAAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACACAAAAGACAAGGGCACTCTTGTATCATTCCTACGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCAAAAGATATGTTTCGGCAACTCGCAATAATGCAGGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCTCATAGCCGCATACGTGAGGAGTGCTGTTATCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACGAGTGCTGATTGGTGCTTTATAATCGGCGTCATGGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAACTCTCTTTCAAGGGCGTCTATAGTTGCCATTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCCCGGTATCATACGGCTTATCACCTCACTGTAAAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACACCCGTTCCCGTGCATCAGCCATTGGTCTCCTCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAACAAAATTCCAACGGATTCTCAATTTGCAGCGAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAGGATTTGCCCTATGGAATCATGGGAGTGGCAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAGTCACAATCGACGACTCGCTTATTGCCCTAAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCACCGCTGCATACGATGATGCTCTAAAAGCTAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAAAGCAATATTGTCAGGCCCTGTGCTTAATGATGAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCATAACAGGGAATTATGCTGAGATGCAACGTCAAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGGCTACATACACCCTTGCAGCATCTTACAAGAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTCGTGAATGTTCATTGCTTAACACTTTGCATTTTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGTCCTGACAAAATCCATAGCACCAATTACAACCCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTTGAAGAGATCATCACATCGACAGACCCGTCAAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCTGCATATTTCACCTCGCTTTTTGATTTAATTTTTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCATTGCAGGGCGTTTTGTATCTGTTCCAGAGAGAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAATCTTCCCCATCAAAAGATTGTGCGTGATGCCGTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGCAGAGATATTTCGCTCTATGCATAATGCACTGAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAAAACTATCGTCCTTGTGATGATGGTCCTCTTTGGGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCAGTTTTTGCGGTTTGCTGTAGACCAGATATTCTCAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCGCTTCATGACGCCGATTATAAAGCACCAATCAGCACGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACGATTGCTGGATTAAAGCGAATCCGAATATCGGAGTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCTGAGAGGGGAAATACCATCAATATTCCCGCAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAGTCGAAGATTGGGAGTCTTTTGCTGTACTCGTGAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAACAAACAGCGCCTCGATGAAATCACCGGCGATAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACATCCACATAGACAGCAAGATGCTCAGCGGATTCACGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCGAGATATTGCGCGTCGTTTGGGGATATGCTCAACTGGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAGGAGTCGCTGATCAAGAATCGAATACTCTCTTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGTTGATTGGGCAAGGGATTATTTTTCGACCGCCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCCCTATCAACGACACACTTCCTCCTATCCATGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTGCCGGGAGGTGGCCGCATGAACGAGTCGCAGGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCAATCCTCTTTTGATGCAGCATTGATTCGCCGAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACAGTCTGACCGCTTTGCGAACGGTATCTACATTAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACACGATCTCCGTCTTTGCCCTCTCACGGCTAAACCCGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACTATTTGAGTGTCCATTTGTTTGTATTGCATTGCTGTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACATGGCGATTTCTTCGGCTTGCTTGCCGTGCGCTGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCCGTTGGCGGCAAATTAAGCATCGTAAACCCGTAAGTCGCGCCCCCTGCGGGCGCGTGGATTGAAACCGGGAGTTGTGCGGCCTTGAGCGTAGAGCGCGTTCTGTCGCGCCCCCCGCAGGCGCGTGGATTGAACT

>NC_011060|4|2|1762054-1768315|PILER-CR
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTCTGCAGCAGTTGATGGTTGGATGGGTATGTCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAATCGGCTTCGGCGCCTGCAAGGCTCTCATAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GTCAAAATATCATCAGTCGGTAGGCATACGAGAAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGGTTTCCGGCAATGCACGACGGACGGGGCAGATC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATGAAGAGGTATTATCAGGAATGCATGGTTCAGTAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCTCTTTGTGTACGTATTGTTGCAGTTGCTACA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TCAATCTGCTACGCAACTCCTTTTTCAGAGTGTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACCTTATCAATACGACAAGCTTATTAGCAAAATGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTATCATTGTGCCGCTTTGAGCAACGATAGTGCCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAATCATACTATCTCCTGTTGTTTGTGCGGGGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGAGATTGCGCAGGCGGCAAATGGTGATCTTGGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATTGTAGTGGTGTTTTATGGTTTTAACAACTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTTGTCGCTAATTCAGGGGCGCAGAATATCCCG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAGTCGAATAAGTCGCGAGATATGTCAATCCACT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTTACTTGCGCAGATGCTTGCGTAAAAGGTGAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGATACCGCTTGGCCCTGCGGTTCAGTCCATCAAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTTTGTTCCCTGATAGGTTACCTGATTCGGTGAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TATCGATACGGAAAAGCAAGAACGTGCGGATTTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGCGTTTTATTGGGAAGTGTATCGGTTATGGCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAACAATTGCCGCAAAATCAACAATAGTTATCTGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTCTCAGCAATGCTCTTTTTGACAAGATCACGC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTTTCTCGGCAGCTTGAGCTGATTGAGGCAGGAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTTACTTGCGCAGATGCTTGCGTAAAAGGTGATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAAGTGTCGCAAAATCTCCGCTCATTTTATCCCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GATTATTCGTTTGGAAAAGTATTGAAACGGATGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TACAGAAGGGGGGACAAGAAAAGACCTGTCCCCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GCGCGTAACTGTAAACTCTTTTCCGCACTCCTCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGGGGTACAGCATATTTATGCCCTGGAGGCGTCAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTTTGTAATCACCTCGGCTATAGATTGGAGTCCA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACATTAAAGGCGTAAAGCATGTAGATATTTTTAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TCGGCAAACTGATAACAAAATACGACATCCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GACTCGATACATGAAATATGGGATATCATGAAAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AATTATTTGGCCGTCATCCCTTTTTTGGGAATCAAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATTATAGTTCCCCTTGTTTTTTGCTTATGTAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTCAATCGCTTTTGTATCTCATCTTCCTTTAGGTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCCTTCTGTGCGGGAAAATGGCAACAATGGTGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGGTACATACTTTTTGAGTGTATCGACCTGCAATG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAATAACATTATCTGTTCTGTATACAGACCTTTA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCATCAATCACACCGGCATAATAAAGAGGTCTA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACCGCTCTCATATCTCTATGAACTAAGCAAAGGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATATTTGGCTTTGCCGGTGTATGGTTTTGCATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATCTTTTGCCGACGAGGAGCAGACGTCCCCTGC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTCCACATGTGCGACGACGGAAAAGCCTCTCTAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACCTGCGGGCATTCTCATGCAACAAAAGGATTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GCGTTCAGCCCTACCATCTTTGCGCTGGAATGCAAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGCGCGTCATCCCAACTCTCCTGCATGTCATCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GCAATGGTTACCAAGCTCCATATAGTCGTTTGGTG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GTGTGTGGTCATAATGCCGTTTTCCATCAACCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGCACTTCCGCTGCCCGTTCAATTGTCATCTCACT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTGCTGATGGTGAGGGCGCACCAGAAGTTTACAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATAATCACTCCTGTTTGATTTTTGCCATTCTGATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAATACGGGGCCTTGGTTATGATCCTTGGGGTTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTGCCGAGTATGATGCAAAACGGGGAGGTACAG
GTCGCACCCCCTGCGGGCGCGTGGATTGAAAC	TGCTTGGATTGTCGTAACTGACCCATCAGGAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACAAAAGACAAGGGCACTCTTGTATCATTCCTAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAAAAGATATGTTTCGGCAACTCGCAATAATGCAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTCATAGCCGCATACGTGAGGAGTGCTGTTATC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GAGTGCTGATTGGTGCTTTATAATCGGCGTCATG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACTCTCTTTCAAGGGCGTCTATAGTTGCCATT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CCCGGTATCATACGGCTTATCACCTCACTGTAAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACCCGTTCCCGTGCATCAGCCATTGGTCTCCTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACAAAATTCCAACGGATTCTCAATTTGCAGCGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGGATTTGCCCTATGGAATCATGGGAGTGGCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTCACAATCGACGACTCGCTTATTGCCCTAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CACCGCTGCATACGATGATGCTCTAAAAGCTAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAGCAATATTGTCAGGCCCTGTGCTTAATGATGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATAACAGGGAATTATGCTGAGATGCAACGTCAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGGCTACATACACCCTTGCAGCATCTTACAAGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TCGTGAATGTTCATTGCTTAACACTTTGCATTTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTCCTGACAAAATCCATAGCACCAATTACAACCC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTGAAGAGATCATCACATCGACAGACCCGTCAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTGCATATTTCACCTCGCTTTTTGATTTAATTTTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATTGCAGGGCGTTTTGTATCTGTTCCAGAGAGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AATCTTCCCCATCAAAAGATTGTGCGTGATGCCGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCAGAGATATTTCGCTCTATGCATAATGCACTGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAACTATCGTCCTTGTGATGATGGTCCTCTTTGG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAGTTTTTGCGGTTTGCTGTAGACCAGATATTCTCA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGCTTCATGACGCCGATTATAAAGCACCAATCAGCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GATTGCTGGATTAAAGCGAATCCGAATATCGGAGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTGAGAGGGGAAATACCATCAATATTCCCGCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTCGAAGATTGGGAGTCTTTTGCTGTACTCGTGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACAAACAGCGCCTCGATGAAATCACCGGCGATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATCCACATAGACAGCAAGATGCTCAGCGGATTCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGAGATATTGCGCGTCGTTTGGGGATATGCTCAACTG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGGAGTCGCTGATCAAGAATCGAATACTCTCTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTTGATTGGGCAAGGGATTATTTTTCGACCGCC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CCCTATCAACGACACACTTCCTCCTATCCAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCCGGGAGGTGGCCGCATGAACGAGTCGCAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAATCCTCTTTTGATGCAGCATTGATTCGCCGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTCTGACCGCTTTGCGAACGGTATCTACATTA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACGATCTCCGTCTTTGCCCTCTCACGGCTAAACCC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TATTTGAGTGTCCATTTGTTTGTATTGCATTGCTGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATGGCGATTTCTTCGGCTTGCTTGCCGTGCGCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CCGTTGGCGGCAAATTAAGCATCGTAAACCCGTAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC

>NC_011060|4|3|1762054-1768383|CRISPRCasFinder
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTCTGCAGCAGTTGATGGTTGGATGGGTATGTCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAATCGGCTTCGGCGCCTGCAAGGCTCTCATAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GTCAAAATATCATCAGTCGGTAGGCATACGAGAAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGGTTTCCGGCAATGCACGACGGACGGGGCAGATC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATGAAGAGGTATTATCAGGAATGCATGGTTCAGTAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCTCTTTGTGTACGTATTGTTGCAGTTGCTACA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TCAATCTGCTACGCAACTCCTTTTTCAGAGTGTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACCTTATCAATACGACAAGCTTATTAGCAAAATGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTATCATTGTGCCGCTTTGAGCAACGATAGTGCCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAATCATACTATCTCCTGTTGTTTGTGCGGGGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGAGATTGCGCAGGCGGCAAATGGTGATCTTGGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATTGTAGTGGTGTTTTATGGTTTTAACAACTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTTGTCGCTAATTCAGGGGCGCAGAATATCCCG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAGTCGAATAAGTCGCGAGATATGTCAATCCACT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTTACTTGCGCAGATGCTTGCGTAAAAGGTGAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGATACCGCTTGGCCCTGCGGTTCAGTCCATCAAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTTTGTTCCCTGATAGGTTACCTGATTCGGTGAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TATCGATACGGAAAAGCAAGAACGTGCGGATTTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGCGTTTTATTGGGAAGTGTATCGGTTATGGCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAACAATTGCCGCAAAATCAACAATAGTTATCTGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTCTCAGCAATGCTCTTTTTGACAAGATCACGC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTTTCTCGGCAGCTTGAGCTGATTGAGGCAGGAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTTACTTGCGCAGATGCTTGCGTAAAAGGTGATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAAGTGTCGCAAAATCTCCGCTCATTTTATCCCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GATTATTCGTTTGGAAAAGTATTGAAACGGATGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TACAGAAGGGGGGACAAGAAAAGACCTGTCCCCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GCGCGTAACTGTAAACTCTTTTCCGCACTCCTCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGGGGTACAGCATATTTATGCCCTGGAGGCGTCAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTTTGTAATCACCTCGGCTATAGATTGGAGTCCA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACATTAAAGGCGTAAAGCATGTAGATATTTTTAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TCGGCAAACTGATAACAAAATACGACATCCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GACTCGATACATGAAATATGGGATATCATGAAAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AATTATTTGGCCGTCATCCCTTTTTTGGGAATCAAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATTATAGTTCCCCTTGTTTTTTGCTTATGTAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTCAATCGCTTTTGTATCTCATCTTCCTTTAGGTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCCTTCTGTGCGGGAAAATGGCAACAATGGTGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGGTACATACTTTTTGAGTGTATCGACCTGCAATG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAATAACATTATCTGTTCTGTATACAGACCTTTA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCATCAATCACACCGGCATAATAAAGAGGTCTA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACCGCTCTCATATCTCTATGAACTAAGCAAAGGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATATTTGGCTTTGCCGGTGTATGGTTTTGCATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATCTTTTGCCGACGAGGAGCAGACGTCCCCTGC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTCCACATGTGCGACGACGGAAAAGCCTCTCTAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACCTGCGGGCATTCTCATGCAACAAAAGGATTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GCGTTCAGCCCTACCATCTTTGCGCTGGAATGCAAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGCGCGTCATCCCAACTCTCCTGCATGTCATCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GCAATGGTTACCAAGCTCCATATAGTCGTTTGGTG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GTGTGTGGTCATAATGCCGTTTTCCATCAACCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGCACTTCCGCTGCCCGTTCAATTGTCATCTCACT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTGCTGATGGTGAGGGCGCACCAGAAGTTTACAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATAATCACTCCTGTTTGATTTTTGCCATTCTGATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAATACGGGGCCTTGGTTATGATCCTTGGGGTTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTGCCGAGTATGATGCAAAACGGGGAGGTACAG
GTCGCACCCCCTGCGGGCGCGTGGATTGAAAC	TGCTTGGATTGTCGTAACTGACCCATCAGGAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACAAAAGACAAGGGCACTCTTGTATCATTCCTAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAAAAGATATGTTTCGGCAACTCGCAATAATGCAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTCATAGCCGCATACGTGAGGAGTGCTGTTATC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GAGTGCTGATTGGTGCTTTATAATCGGCGTCATG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACTCTCTTTCAAGGGCGTCTATAGTTGCCATT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CCCGGTATCATACGGCTTATCACCTCACTGTAAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACCCGTTCCCGTGCATCAGCCATTGGTCTCCTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACAAAATTCCAACGGATTCTCAATTTGCAGCGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGGATTTGCCCTATGGAATCATGGGAGTGGCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTCACAATCGACGACTCGCTTATTGCCCTAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CACCGCTGCATACGATGATGCTCTAAAAGCTAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAGCAATATTGTCAGGCCCTGTGCTTAATGATGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATAACAGGGAATTATGCTGAGATGCAACGTCAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGGCTACATACACCCTTGCAGCATCTTACAAGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TCGTGAATGTTCATTGCTTAACACTTTGCATTTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTCCTGACAAAATCCATAGCACCAATTACAACCC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTGAAGAGATCATCACATCGACAGACCCGTCAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTGCATATTTCACCTCGCTTTTTGATTTAATTTTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATTGCAGGGCGTTTTGTATCTGTTCCAGAGAGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AATCTTCCCCATCAAAAGATTGTGCGTGATGCCGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCAGAGATATTTCGCTCTATGCATAATGCACTGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAACTATCGTCCTTGTGATGATGGTCCTCTTTGG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAGTTTTTGCGGTTTGCTGTAGACCAGATATTCTCA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGCTTCATGACGCCGATTATAAAGCACCAATCAGCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GATTGCTGGATTAAAGCGAATCCGAATATCGGAGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTGAGAGGGGAAATACCATCAATATTCCCGCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTCGAAGATTGGGAGTCTTTTGCTGTACTCGTGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACAAACAGCGCCTCGATGAAATCACCGGCGATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATCCACATAGACAGCAAGATGCTCAGCGGATTCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGAGATATTGCGCGTCGTTTGGGGATATGCTCAACTG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGGAGTCGCTGATCAAGAATCGAATACTCTCTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTTGATTGGGCAAGGGATTATTTTTCGACCGCC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CCCTATCAACGACACACTTCCTCCTATCCAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCCGGGAGGTGGCCGCATGAACGAGTCGCAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAATCCTCTTTTGATGCAGCATTGATTCGCCGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTCTGACCGCTTTGCGAACGGTATCTACATTA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACGATCTCCGTCTTTGCCCTCTCACGGCTAAACCC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TATTTGAGTGTCCATTTGTTTGTATTGCATTGCTGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATGGCGATTTCTTCGGCTTGCTTGCCGTGCGCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CCGTTGGCGGCAAATTAAGCATCGTAAACCCGTAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGGGAGTTGTGCGGCCTTGAGCGTAGAGCGCGTTCT
GTCGCGCCCCCCGCAGGCGCGTGGATTGAACT

>NC_011060|4|1|1762054-1768383|CRT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTCTGCAGCAGTTGATGGTTGGATGGGTATGTCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAATCGGCTTCGGCGCCTGCAAGGCTCTCATAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GTCAAAATATCATCAGTCGGTAGGCATACGAGAAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGGTTTCCGGCAATGCACGACGGACGGGGCAGATC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATGAAGAGGTATTATCAGGAATGCATGGTTCAGTAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCTCTTTGTGTACGTATTGTTGCAGTTGCTACA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TCAATCTGCTACGCAACTCCTTTTTCAGAGTGTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACCTTATCAATACGACAAGCTTATTAGCAAAATGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTATCATTGTGCCGCTTTGAGCAACGATAGTGCCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAATCATACTATCTCCTGTTGTTTGTGCGGGGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGAGATTGCGCAGGCGGCAAATGGTGATCTTGGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATTGTAGTGGTGTTTTATGGTTTTAACAACTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTTGTCGCTAATTCAGGGGCGCAGAATATCCCG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAGTCGAATAAGTCGCGAGATATGTCAATCCACT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTTACTTGCGCAGATGCTTGCGTAAAAGGTGAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGATACCGCTTGGCCCTGCGGTTCAGTCCATCAAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTTTGTTCCCTGATAGGTTACCTGATTCGGTGAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TATCGATACGGAAAAGCAAGAACGTGCGGATTTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGCGTTTTATTGGGAAGTGTATCGGTTATGGCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAACAATTGCCGCAAAATCAACAATAGTTATCTGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTCTCAGCAATGCTCTTTTTGACAAGATCACGC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTTTCTCGGCAGCTTGAGCTGATTGAGGCAGGAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTTACTTGCGCAGATGCTTGCGTAAAAGGTGATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAAGTGTCGCAAAATCTCCGCTCATTTTATCCCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GATTATTCGTTTGGAAAAGTATTGAAACGGATGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TACAGAAGGGGGGACAAGAAAAGACCTGTCCCCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GCGCGTAACTGTAAACTCTTTTCCGCACTCCTCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGGGGTACAGCATATTTATGCCCTGGAGGCGTCAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTTTGTAATCACCTCGGCTATAGATTGGAGTCCA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACATTAAAGGCGTAAAGCATGTAGATATTTTTAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TCGGCAAACTGATAACAAAATACGACATCCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GACTCGATACATGAAATATGGGATATCATGAAAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AATTATTTGGCCGTCATCCCTTTTTTGGGAATCAAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATTATAGTTCCCCTTGTTTTTTGCTTATGTAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTCAATCGCTTTTGTATCTCATCTTCCTTTAGGTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCCTTCTGTGCGGGAAAATGGCAACAATGGTGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGGTACATACTTTTTGAGTGTATCGACCTGCAATG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAATAACATTATCTGTTCTGTATACAGACCTTTA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCATCAATCACACCGGCATAATAAAGAGGTCTA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACCGCTCTCATATCTCTATGAACTAAGCAAAGGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATATTTGGCTTTGCCGGTGTATGGTTTTGCATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATCTTTTGCCGACGAGGAGCAGACGTCCCCTGC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTCCACATGTGCGACGACGGAAAAGCCTCTCTAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACCTGCGGGCATTCTCATGCAACAAAAGGATTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GCGTTCAGCCCTACCATCTTTGCGCTGGAATGCAAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGCGCGTCATCCCAACTCTCCTGCATGTCATCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GCAATGGTTACCAAGCTCCATATAGTCGTTTGGTG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GTGTGTGGTCATAATGCCGTTTTCCATCAACCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGCACTTCCGCTGCCCGTTCAATTGTCATCTCACT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTGCTGATGGTGAGGGCGCACCAGAAGTTTACAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATAATCACTCCTGTTTGATTTTTGCCATTCTGATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAATACGGGGCCTTGGTTATGATCCTTGGGGTTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTGCCGAGTATGATGCAAAACGGGGAGGTACAG
GTCGCACCCCCTGCGGGCGCGTGGATTGAAAC	TGCTTGGATTGTCGTAACTGACCCATCAGGAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACAAAAGACAAGGGCACTCTTGTATCATTCCTAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAAAAGATATGTTTCGGCAACTCGCAATAATGCAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTCATAGCCGCATACGTGAGGAGTGCTGTTATC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GAGTGCTGATTGGTGCTTTATAATCGGCGTCATG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACTCTCTTTCAAGGGCGTCTATAGTTGCCATT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CCCGGTATCATACGGCTTATCACCTCACTGTAAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACCCGTTCCCGTGCATCAGCCATTGGTCTCCTC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACAAAATTCCAACGGATTCTCAATTTGCAGCGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGGATTTGCCCTATGGAATCATGGGAGTGGCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTCACAATCGACGACTCGCTTATTGCCCTAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CACCGCTGCATACGATGATGCTCTAAAAGCTAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAGCAATATTGTCAGGCCCTGTGCTTAATGATGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATAACAGGGAATTATGCTGAGATGCAACGTCAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGGCTACATACACCCTTGCAGCATCTTACAAGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TCGTGAATGTTCATTGCTTAACACTTTGCATTTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTCCTGACAAAATCCATAGCACCAATTACAACCC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TTGAAGAGATCATCACATCGACAGACCCGTCAAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTGCATATTTCACCTCGCTTTTTGATTTAATTTTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CATTGCAGGGCGTTTTGTATCTGTTCCAGAGAGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AATCTTCCCCATCAAAAGATTGTGCGTGATGCCGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCAGAGATATTTCGCTCTATGCATAATGCACTGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AAAACTATCGTCCTTGTGATGATGGTCCTCTTTGG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAGTTTTTGCGGTTTGCTGTAGACCAGATATTCTCA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGCTTCATGACGCCGATTATAAAGCACCAATCAGCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	GATTGCTGGATTAAAGCGAATCCGAATATCGGAGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CTGAGAGGGGAAATACCATCAATATTCCCGCAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTCGAAGATTGGGAGTCTTTTGCTGTACTCGTGA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AACAAACAGCGCCTCGATGAAATCACCGGCGATA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATCCACATAGACAGCAAGATGCTCAGCGGATTCAC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGAGATATTGCGCGTCGTTTGGGGATATGCTCAACTG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGGAGTCGCTGATCAAGAATCGAATACTCTCTT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGTTGATTGGGCAAGGGATTATTTTTCGACCGCC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CCCTATCAACGACACACTTCCTCCTATCCAT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TGCCGGGAGGTGGCCGCATGAACGAGTCGCAG
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CAATCCTCTTTTGATGCAGCATTGATTCGCCGAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	AGTCTGACCGCTTTGCGAACGGTATCTACATTA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ACGATCTCCGTCTTTGCCCTCTCACGGCTAAACCC
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	TATTTGAGTGTCCATTTGTTTGTATTGCATTGCTGT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	ATGGCGATTTCTTCGGCTTGCTTGCCGTGCGCT
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CCGTTGGCGGCAAATTAAGCATCGTAAACCCGTAA
GTCGCGCCCCCTGCGGGCGCGTGGATTGAAAC	CGGGAGTTGTGCGGCCTTGAGCGTAGAGCGCGTTCT
GTCGCGCCCCCCGCAGGCGCGTGGATTGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011060.1\|WP_012508388.1\|1768609_1770064_+\|DUF4403-family-protein	unknown	unknown	gnl\|CDD\|379578
NC_011060.1\|WP_012508385.1\|1759907_1760552_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_011060.1\|WP_012508392.1\|1776571_1777330_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NC_011060.1\|WP_012508378.1\|1749067_1752415_+\|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|237425
NC_011060.1\|WP_012508398.1\|1780984_1784089_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NC_011060.1\|WP_012508386.1\|1760548_1761580_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_011060.1\|WP_012508394.1\|1777943_1778309_-\|DUF3127-domain-containing-protein	unknown	unknown	gnl\|CDD\|378639
NC_011060.1\|WP_012508383.1\|1757173_1758835_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
NC_011060.1\|WP_012508381.1\|1754303_1756523_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_011060.1\|WP_012508390.1\|1771326_1772973_+\|IS1634-family-transposase	unknown	unknown	gnl\|CDD\|227708
NC_011060.1\|WP_012508395.1\|1778372_1779242_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|132997
NC_011060.1\|WP_012508396.1\|1779264_1780536_-\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012508391.1\|1773379_1776535_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|237425
NC_011060.1\|WP_012508379.1\|1752463_1753714_-\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012508384.1\|1758863_1759904_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|274216
NC_011060.1\|WP_012508397.1\|1780536_1780935_-\|DoxX-like-family-protein	unknown	unknown	gnl\|CDD\|372725
NC_011060.1\|WP_012508393.1\|1777349_1777922_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NC_011060.1\|WP_012508382.1\|1756541_1757177_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_011060.1\|WP_012508380.1\|1754062_1754317_+\|CRISPR-associated-endonuclease-Cas3''	cas3HD	cd09641_cas3HD_CAS-I	gnl\|CDD\|193608
NC_011060.1\|WP_012508387.1\|1761585_1761876_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NC_011060.1\|WP_012508388.1\|1768609_1770064_+\|DUF4403-family-protein	gnl\|CDD\|379578	pfam14356, DUF4403, Domain of unknown function (DUF4403). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 455 and 518 amino acids in length. There is a single completely conserved residue W that may be functionally important.	2.56512e-119
NC_011060.1\|WP_012508385.1\|1759907_1760552_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	5.04578e-48
NC_011060.1\|WP_012508392.1\|1776571_1777330_-\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.61876e-69
NC_011060.1\|WP_012508378.1\|1749067_1752415_+\|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	1.39804e-90
NC_011060.1\|WP_012508398.1\|1780984_1784089_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NC_011060.1\|WP_012508386.1\|1760548_1761580_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_011060.1\|WP_012508394.1\|1777943_1778309_-\|DUF3127-domain-containing-protein	gnl\|CDD\|378639	pfam11325, DUF3127, Domain of unknown function (DUF3127). This bacterial family of proteins has no known function. However, it does show distant similarity to pfam00436, with proteins such as Prevotella buccalis HMPREF0650_0099 being similar to both families. This suggests that this family may have a DNA-binding function.	1.15267e-42
NC_011060.1\|WP_012508383.1\|1757173_1758835_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NC_011060.1\|WP_012508381.1\|1754303_1756523_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.86847e-55
NC_011060.1\|WP_012508390.1\|1771326_1772973_+\|IS1634-family-transposase	gnl\|CDD\|227708	COG5421, COG5421, Transposase [DNA replication, recombination, and repair].	2.46551e-19
NC_011060.1\|WP_012508395.1\|1778372_1779242_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	1.20969e-27
NC_011060.1\|WP_012508391.1\|1773379_1776535_-\|PAS-domain-S-box-protein	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	3.11381e-98
NC_011060.1\|WP_012508384.1\|1758863_1759904_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|274216	TIGR02589, conserved_hypothetical_protein, CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG. This model represents one of two closely related CRISPR-associated proteins that belong to the larger family of TIGR01595. Members are the Csd2 protein of the Dvulg subtype of CRISPR/cas system. CRISPR stands for Clustered Regularly Interspaced Short Palindromic Repeats. The related model is TIGR02590, the Csh2 protein of the Hmari CRISPR subtype.	7.78281e-114
NC_011060.1\|WP_012508397.1\|1780536_1780935_-\|DoxX-like-family-protein	gnl\|CDD\|372725	pfam13781, DoxX_3, DoxX-like family. This family of uncharacterized proteins are related to DoxX pfam07681.	7.24688e-23
NC_011060.1\|WP_012508393.1\|1777349_1777922_-\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.78058e-35
NC_011060.1\|WP_012508382.1\|1756541_1757177_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	9.11499e-110
NC_011060.1\|WP_012508380.1\|1754062_1754317_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|193608	cd09641, Cas3''_I, CRISPR/Cas system-associated protein Cas3''. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; HD-like nuclease, specifically digesting double-stranded oligonucleotides and preferably cleaving at G:C pairs; signature gene for Type I.	9.89855e-12
NC_011060.1\|WP_012508387.1\|1761585_1761876_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.43638e-34

>NC_011060.1|WP_012508387.1|1761585_1761876_+|CRISPR-associated-endonuclease-Cas2
MLVLVTYDVNTETPAGKRRLRRIAKTCQNYGQRVQFSVFECNVDPAQWTKLRGKLVHEMDHDHDSLRFYFLGSNWQNHIEHEGAKEPRDLEGPLIL
>NC_011060.1|WP_012508386.1|1760548_1761580_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKYLNTLFVTTQGAYLSKEGECAVIKIEKEVKTRIPLHMLDGIICFGSVTCSPFLLGHCAESGVTVTFLSLYGKFLCQVQGATRGNILLRRAQYRMADNNLQTARLARSFVIGKIGNARITLARTVRDHPEKVNSVKLKNAQHILAGCIKRLQDETDQERIRGIEGEAAKVYFDVFDECITSTDPLFRFTGRNRRPPLDRINCLLSFLYTLLTHDIRSALESCGLDPAAGFLHKDRPGRPSLALDMIEEFRSYIADRLALSLINRGQIQSKDFTISETGAVLLKDDARKTLLTAYQNRKQEEIEHPFVKEKMAIGLLWHMQAMLLARHIRGDIDTYPPFVWR
>NC_011060.1|WP_012508385.1|1759907_1760552_+|CRISPR-associated-protein-Cas4
MYPESDFVMLSALQHFVYCPRQCALIHLEQIWSENGYTAEGREMHERVDNGETSYRSGVRVTRSAALRSAILGISGIADVVEWHKLKDHEEPFPVEYKRGKPKKHDADKIQLCAQAMCLEEMLGIQISAGALFYGQTKHRLDVDFDDVLREKTVLAAEGVHDLFRNGVTPPPEPGPKCKLCSLKEECLPEVIVQGKTAKVYLQKLFHTLSEEEI
>NC_011060.1|WP_012508384.1|1758863_1759904_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTQTIENRYEFVLLFDVKNGNPNGDPDAGNLPRIDPETGHGITTDVCLKRKIRNYVELLKKNESPYEIHVREGEFLSEHHKRAHNALTDEKIYVFVPADLRGELSSFAEYPEGVGFENDAIYFQLSSDIDKVKKDVEKLKNITDASKAKIKELFVDGKSVIAKKWMCKNFFDVRTFGAVMSTGDKTCGQVRGPVQLSFSRSIEPIVGLEIAMSRTAAVNVDKSSDKGLGARKSIVPYGLYRVHGFISAPLAKQTGFTEDDLELLWSALINMFDHDRSASRGEMASRQLFVFQHESELGNTPAHKLFERIKVERKPLSNGPARFYEDYQITIDETNLGKVTLLRKIA
>NC_011060.1|WP_012508383.1|1757173_1758835_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MIFQSLIELYDRLAINDDVPPYGFSMEDIGFFVTIDKEGNLIGDPEESRKPIKPNVFEYYLSKTPYTNEVNVRAGGGAKETPNFMVDKADYFFGMSGNTEKNEHHSSFVNLISEVCSNSSDEGVIAVISFLKKWNALDSIGLKNWKEISGNKGKWVAFKLFGDSQFIHERVEVRKLWTNHLLKKEYKKGFSLIDGKIHDLQTQYAQFKFGSGASLVSFNDVSYESYGKKKGENALISVEAEFKSSTALKYLFRSKTQRLQIAETTTVFWAEKKSSVENFMGILLNPSIEDKIANIPIQKFLETIRDGKLPDDIEKEKELKFFILGFSLNKARLSLRFSYVSTVNKMMKRLREHFLCLQMERSKKDDVICPGIWHLLKETVREPKDISPVLGGALLRSILTGVNYPQHLFQGVLGRIRVDKVNYLRASILKAVLQRNYKMEVPMSLDTERREIEYLLGRLFAVLEKAQFDAIGNVNASIKDRYYTAASTTPASVFPRLISLSHHHIGKSDYGDISDRRIREIIEHIDTFPALLNLKQQGLFAIAYYQQKNAFYK
>NC_011060.1|WP_012508382.1|1756541_1757177_+|type-I-C-CRISPR-associated-protein-Cas5
MSYGIKLRVWGDYALFTRPEMKVERVSYDVMTPSAARGILEAIYWKPSIRWIIDRIHVLKPIRFENIRRNEVAKKTSLNRVDMVGQYPISIIVDDSDTRQQRASMVLRDVEYIIEAHFYFSMKEDNNEGKHLDIFTRRAKAGQCFHRPYFGCREFPVNFEWCVDIPKSLLSGEQDLGYMLHDIDFENNMTARFFRAIMHNGIINCKQEAVS
>NC_011060.1|WP_012508381.1|1754303_1756523_+|CRISPR-associated-helicase/endonuclease-Cas3
MSKIDHSSAGALQNENFWRYYAHSRPSEPSENWHLLEDHLQAVAEMAAGFARFFGAENWADIAGRWHDLGKGTLSWQAYLRHENNVTDEFSAFYSGHPVHAIVGAQELYKQSDQAGKLLAYCIAGHHGGLPNWHDDAIAALKSRLMEDFTDVDFPHSAPKLPSLLPLSKIEQNRLGFIIQFFVRMLFSCLVDADYLDTEASLSNKKSVWRSGYPALDELSERFSTNFDALRNKADSTTVVNQYREKVLNDCLKSAEFDPGLFSLTVPTGGGKTLASLAFALAHAKKYGKRRIIYVIPFTSIIEQNAQVFRDMLGDDAILEHHCNFMVDESDWKSLLASENWDAPIIVTTNVQFFNSFYASKTSYCRKLHNVADSIVIFDEVQAIPVEKLSPCMEVIKELSLNYGVSSILCTATQPAIEYSEQFQSGLQGVREIIQDVHSLFGALKRTEESFIGELSVQDVATKLSNYEQVLCIVNTRQQALDIYNALPKSDGTIHLSALMYPLHRTNKLNEIRRRLHDGEPCRVVSTQLIEAGVDVDFPCVFRVVAGIDSIAQAAGRCNRNGLHEKACQVFVFSFADLPITPFIKQAAQSAEKLFDLFKGKLTSPECVREYFYDYFWKNQQRMDSEGIVSLCQTAQSGEIQFKKLADFEIINSATIPVIIALDQNSLTMVEELKYSKYKGRILRKLQKYTVQIHSNQIKEIQKSLEVIVPGIFVLISDVLYSSNTGLKCSTPQGNAFIH
>NC_011060.1|WP_012508380.1|1754062_1754317_+|CRISPR-associated-endonuclease-Cas3''
MTQQSVRPVAHLRQNPDGSWMEHDLKEHLTRVAEKAALFADEFSNGVWAKTAGLLHDLGKYNPQWQEYIRKNNGDYTEENHEQD
>NC_011060.1|WP_012508379.1|1752463_1753714_-|hypothetical-protein
MQPIRINNYCFNHIHTWIQYDKRFPQFIEVVIEVFYPENRQAEGLVMFNHGFLIGNDLLYYPKKIIGGLLNDNPLFGINPSRYYNYTSAIVEHNWAMAFVTASHMQSVAMPWIDFGGNPRVGQDAYAAASYLIKYGATDEFYKIDEHNRNRSFYNRELILQTGFMKNNNVIFAGHSVGGAHAQVASVGFEKLQEIGKDTSRSFDPVLFDREFVPALSSAMSSWSAEERANPVGYLQLSPVDMKVPLLAPGMERYRDVLSESPIPGIMIIGECDNACLNMSQPPAWSSDAAKKTEFTQLSSPTSWSAVASVEYGSHCGYLTEKSPLCSVADIKNPCKSNKEKEPYKAGGDETLFTTELIKNFINLYPENDGFNGGFKGDFDQWRGSNFMKWLNRKSPDGVINLVPFSDGEYVSFARD
>NC_011060.1|WP_012508378.1|1749067_1752415_+|PAS-domain-containing-hybrid-sensor-histidine-kinase/response-regulator
MSQNASPVDDFSELRSRAEERLQKSQLTNMHLSSSPEEMLRLIHELAVHQIELEIQQQELRESRKELEKSLERYTDLYDFAPLGYLTLAPDGEIIELNLTAATILDISRSRLRGKQLNKFIIPSDRTTFATLLKNVFSHKEPTSCEVELSASDKDTCSQKTVRIEARINDNEKSCRAMLSDITMHKRMAQAMLVTNERQRLIVDATHSGSWEWDLQSNHTIWSEELWRLLGLEPFSCQATYEVWKLSMLDEERDQVEQIVLNAVERGQEFTVEWRVRSTSGQERWVMSQGTPFKDSDGVVNRYVGITIDITELKMAQEKGKKEQQFSKSIINSIPGSFYIINTEGTYSGWNSFQRDHVVGKPESEMQDVAAISTIHPEDREFVQEKMVNVLEYGLEENVEARVLLHGGPEFRWFLMTGRRIVVDGNPFLIGTGIDITEQKKIDDLQRFLSSASYGSEQEPFFNALARYIANSLEMNFVRIDSLDGDGLTARTLAVWCDDHFEDNVVYSLNDTPCGDVVGKDVCCFQEKVCQLFPHDQVLKDLRAESYVGVTLWDHKKRPIGLIAVIGRQPLEKKQFAETALKILSVRAASELERLQSENALQASEKKYRELFESVPIGLYQSTMKGKIIAANQHCLEIAKCRESERDVWFSQDTRQSYVHPEDGERIRELLLKKGHINNFEADFLLMDGTIATLSNTAKIVLNEQGAPDFIAGSLIDVTELKRSEAEKAKLEDQLHQSQKMEMVGRLAGGIAHDFNNMLTLILGHTEMALEHFDPSQTVYTDLEAIREAATRSADLTRQLLAFARKQIIMPEVLELDNLIGKMLPMLRRLIGENIKLIWIPNSKNSHLKIDPSQIDQIVVNLCVNARDAITNNGTITIETGHHLAHKSSDPEQPACESVTLSVSDDGCGIEKNNLDHIFEPFFTTKEPGKGTGLGLSTVYGIVKQNNGTISCLSELKKGTTFTIHLPLYNAPPPAAETTPTSTLMYTGHQTILLVEDELPILKLCQLMLEHNGYKVLAAATAAEAIKRAENFSGTIDLLVTDVIMPEMNGSELSKKLLSVRPELKILFMSGYTADIIAQDNVLERGVNFLQKPVTMKSLTLALYHIFNPTPLQEP
>NC_011060.1|WP_012508388.1|1768609_1770064_+|DUF4403-family-protein
MKKPIIITAVVVALLAASFYFLLRKSSAIPPVAITETVNIDIPQSTFNIPIRLEIKSLSDYLNAKITGQFLNTTLFLQESRKEKIALTLTKTGQITIRSKGRELVCTLPLTVNATLLDSRFGKTLSKLVKPFRTTIILTLSTPIALDRDWKLKTNFKIRHYRWASEPVLKIGPFRKNLRETLDNAIRQNNHRLTSMVDKEINKAASLEKTVAGVWHDLQEPILIYRNPAPIWMRFSCNDIKGDISLQQQDIICLASVKAKMLIVTDTTTVLKQHPLPDFKKIPVEELQRKSDVFIYANTSFHEINQQLNELLKEAEISSKGYTITIKAIEAYASTEGLSVAVDTEGDLKGRFFLTGHPVFDLATKRLNIVDFDFAVNSNSILVNRGDEILHDLLKKRIASKLNLGMETLIAKLPFIVHQAIAKEKTGKTIDLIMNNLEIKQCDILMGKEGVHFIINASTETTLTLKGTSKNCFLIYHLNQQSLH
>NC_011060.1|WP_012508390.1|1771326_1772973_+|IS1634-family-transposase
MYVDSSKTTINGKTYQRHLFRESYREDGKVKNRTLGKISKCSEGEIAAIKLALKYKDNLAALLHIEDVELHEGLRVGVVYALKTLAERLGISKTLGNTRQGKLALWQIMARLIGQGSRLGAVRMAARYGACDVLELERFTEDDLYANLAWLTEHQERIEQQLFKHNSAGAGPELLLYDVTSSYLEGMENVLAAFGYNRDGKKGKKQIVIGLLCTADGDPVAVRVFAGNTGDKSTVAEQIRTIANTFGIEEVTMVGDKGMIKTPQAKELTDAGFHYITSLSKPEIRTLLKAEVLQMDFFDSELYEVENKTDGVRYVLRRNPVREAEMAKNRQERVKKIQRYVDEKNSYLAGSLKRDKDVAERSLQKKISQYKLNDVLELTHQERVFTVTVNEEILKGVALLDGCYVIKTDVKKELLSTEQVHDRYKDLAKVEHAFRTFKQSHLEIRPVHVRTEASTRGHVFAVMLAYKIERQLSELWKKCECTVPEGIDELGAIRSTIVTLKGSSCQKIPQSKGLAAELLAAAGITLPSIIDAKNVDVVTRKKLAPKRK
>NC_011060.1|WP_012508391.1|1773379_1776535_-|PAS-domain-S-box-protein
MSQDMSQDRERLNLVLSVAREGFWDWNLKTDQLYLSPRYCEVTGYSPIDTLFDTAFMKLIIHPDDHQLFFHALEALHQGREESLTIEYRMISKDGVMHWIECRCRKVEHDEDGTVSHLIGTIVDITDKKKREHDLHKLNHALLASNERMHLIMAATNTSIWEYDVITDTNFWPDKLWRMYGLEPYSCEATHENWLNTIIPEDRERIAQITGEDIRNGVEFNNIWRVRDPDGAIRWLMAKGTPFKDADGKVLRYAGIVLDITDRKVQEEALQESENRFRNLFEKHSSVILVLDPDTSQIVDANQAAATFYGWPLEKLRQMPFRRVTMSSPETVKRNLERFRAAEKEQGSFHHCHRHILADGSIRDVEVFSCAIPYHGKPLIYSIINDITERTQIEHALRDSEKKFRSITEQIAEMVFVTDDKGALTYVSPVVEKIFGYSASEVIRHLFTEYLAEEEVSRALAILANTLRDYFTDQVFEGRFRKKNGSLFYGEVHVRSYRDQDSSGMIGLIRDISERKAYQQELLESRQFLKTIYDDVNYSIFVVDVLPDRSYLFKGINPMHEKLTGIKSEQISGKKPEEILSPHFAELVMRHYDECIREGHPIRYEELLPFKGKETLWETVLNPVRNESGTICRIIGTSIDISERRLAEEERAQLEVQLQQSQKMEMIGRLAGGIAHDFNNMLTVILGHSEMAIELFDPSQQAYADLEAIRQAGARSADLTRQLLAFARKQIVIPKILELNSVIEHMLPMLRRLIGENIALVWIPDCKNSHLKMDPSQIDQILVNLCVNARDAITGNGTITLKTECLALPDIGRNARNSGESPVDYVRLSIRDDGGGIDKDDLHHIFEPFFTTKEQGKGTGLGLSTVYGIVKQNNGTIECQSEPGQGTIFTIQLPRYNLQPQVEQQTQAEQFRHHGHQTILLVEDQPAILKLCKSMLERNGYAVLTAESPAEALRKEANYKGTLDLLLTDVIMPEMNGSELSRQLQALRPELKTLFMSGYTDDVIIHNTLLDSGVNFIQKPFTMKSLITIVDTILNPDECEPSGATTRPLAE
>NC_011060.1|WP_012508392.1|1776571_1777330_-|SDR-family-oxidoreductase
MRLFEKIALVTGAAGGIGRAVALCFAGEGAVVIVSDINATGCAETLEQLERKGGSGMSVIADVTQEEEILALYRQTGERYGRLDIVVNIAGGDCEPAADVEGIDYLRMSANLDLNLKSCIISCREAARLMKPQGFGKIVNMSSLVYRGSPNQFSYAAAKGGIYAFTRSLALSLGRYGITANALAPALVEVPAFVAALGPERWEMLRRECAQRYPLGRVATPDDVARCALFLASADADFITGQILEISGGARL
>NC_011060.1|WP_012508393.1|1777349_1777922_-|3'-5'-exonuclease
MYLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAIIKPEGFVIPSSAVQIHGISTQRALLEGKPLGQVLQSFYELVADAEVLVAHNISFDEKIVGSELIRAGMPNSLPSKRKICTMESTTDFCAIKGPYGNKWPKLSELYFQLFGTVFNEAHNAASDIQATAKCFWELKRRGVIR
>NC_011060.1|WP_012508394.1|1777943_1778309_-|DUF3127-domain-containing-protein
MQLTAKLAAILPEQSGTGKNGTWKKQDIIVETDGQYPKKICISLWGEKYDRNLLKVGSRLTISFDIESREFNGKWYTDVKGWKVEGVNDGGASYAQDAPSYAPPAYEREGESVISNDDCPF
>NC_011060.1|WP_012508395.1|1778372_1779242_-|glycosyltransferase-family-2-protein
MGFLNRPYVTVTIPMYNSASFIGETIQSILSQTFTDFELLIYDDHSTDGSYDIAASLADSRIKLFRNSENIGPEANWNQAISQVRGKYVKLVCGDDILFPHCLEKQVAVFDDPRNAGVSLVSSQRTIIDPSGKTLIKKVNFVDGGRMDKVEVIRKMVRMGTNIIGEPVCGLYPAELIAKISGYSAVVPYTIDLDFWIQMLRHGDLFVIDESLCAFRISDLSWSSRIGDLRYQQFMEFMEQAAADESHGVTDLDLFIGKINCAVQSMTSLMGFKLFASSASERKNMRNAS
>NC_011060.1|WP_012508396.1|1779264_1780536_-|hypothetical-protein
MNLRHFDGELNTVARLFLSVSVTVIALASLFGAAGALMANLFLLKLHPYIFFIGFGNLAILILNRYLTAAIYPELKVDPFRQLRYIILILIALVMITVAIAMEWPLLKALTGLVLIIAVVAPLREIFTTLSVSKIWKEVSVRYYIFDVLFLLVANIGLFTLGLKEAFPDQWLIPFFVTQSSYFLGSSFPLSISVMGFLYTYAWSRSSKRELVKRLFSLWFYVFVGGVLLFLIVILAEYYLGMMLISHILLFGVMALFGGFTLYLYNFFHKNFPHPALAFLLSGLALLFATSAYGIMNIFFLKGIHFGTIPPLRFDRMWIYHSHTHAALLGWITFSFIGMIYIVIPSIIRSNSLETLRSERALSALLGEPVMKRAFTQLTLLLLSATAILLAFFLENNLLLGVAGTLYGCTVSYLSINLRQEIT
>NC_011060.1|WP_012508397.1|1780536_1780935_-|DoxX-like-family-protein
MRFFVNQTPSLLICRLALAFSWVYQGAVPKIACQSKGEIDLLGHLIPVYQWACEAVFWIGAAEILFGLFLLVARSQWVFLLNIAALTGLLLFVALFEPELFTLPFNPLTLNISLLALSAIALLELKKLNHLT
>NC_011060.1|WP_012508398.1|1780984_1784089_-|efflux-RND-transporter-permease-subunit
MTLTELSIKRPTLIVVIFTVLGILGLFSYRQLQYELLPKMTPPVVTISIRYPGASPGEVETSLTKPVEEAVSAIEKISSITSTSTEGLSVVAIEFSNSANIEKALQDAQRKINEVRDSFPDEAKAPVITRFALDEVPVLRIGATSSLPDTDFYQLLKDDIKPQLASIAGVGQVYLLGGREREIKVNIDLERLQSYSLTIPDVLKEVGKANIDFPTGKIDDSDKQFVVRLAGKFTSLEELGALVLRSSSTGTVTLRDVAEVEDGFKEITTLTRVNGRSAVGIMVMKQSDANTVDVSRLTRATLSRLTALYHSKNLSFDIAQDASTFTLEAVTAVQHDLMLAILLVALVMMLFLHSLRNSLIVLVSIPTSLVTTFIGMYAFGFSLNLMTLLSLSLVVGVLVDDSIVVLENIYRHLERGEEPRHAALTGRNEIGFTALSITLVDVVVFLPLSLVSGIVGNILREFSVVMVISTLVSLFVSFTLTPLLASRFSKVEKFSGKNIFERFAIAFENSFQRLREGYLNLLQWSLRNPRKVFFSAIILLFSSFLLPFFGFIGGEFISVSDRGEFAVMLELEPGTPLEETNRVTRSVERRLTAMAEVKKVMVNVGASNEGFFNQSADNISEINVRLSPKEERSRSTDAIMQAIRINLQDIAGLKASINPIGIFGTANETPVAVILSGPLRSQVTRVAEALRDSVKTIAGTADVKLTSQVGSPEMRIVVDREKMASFGLTIADVGAALRTAYAGDEAGKFRDGGDEYDIRVMLDKYYRQGTATLSEITFRTPEGDLVRLGQFVSFEQDRGYTQLQRKDRNNAVWVKAQVIGRPVGSIGKEIERIMGNMKKSGFMPSTVSYAYESDLKRQGESNSTLLLSFLVAIIFVYLIMVALYDSWIWPMVVMFSIPLALIGALFALALTGKSLSIFTILGIIMLVGLVGKNAILLVDFINKFRLEGMELSVAIIEAARERLRPILMTTLTLIFGLLPIALSGSSGSEWKSGLAVALVGGLASSMFLTLLVIPVVYVWFDRMSRKLARLKRKP

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Crispr_ID: NC_011060_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011060_5

1808699-1808787

Orphan

Consensus_repeat	Method
ACAGTCGAAATTACCCTTGACCTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011060_5

>merge|NC_011060|5|1808699-1808787|CRISPRCasFinder
ACAGTCGAAATTACCCTTGACCTTTTTCGGAGCGCCATCAAGTGTCACGAGCTGATTCCAGGCACAGTCGAAATTACCCTTGACCTTTT

>NC_011060|5|4|1808699-1808787|CRISPRCasFinder
ACAGTCGAAATTACCCTTGACCTTTT	TCGGAGCGCCATCAAGTGTCACGAGCTGATTCCAGGC
ACAGTCGAAATTACCCTTGACCTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011060.1\|WP_190273981.1\|1792725_1801161_-\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|277369
NC_011060.1\|WP_012508411.1\|1802538_1803252_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NC_011060.1\|WP_012508414.1\|1806682_1807042_+\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012508426.1\|1819045_1820107_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133016
NC_011060.1\|WP_012508410.1\|1801850_1802513_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NC_011060.1\|WP_150085821.1\|1814920_1816366_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|293736
NC_011060.1\|WP_012508412.1\|1803529_1804990_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238535
NC_011060.1\|WP_012508409.1\|1801514_1801778_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237553
NC_011060.1\|WP_012508422.1\|1813987_1814737_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NC_011060.1\|WP_012508415.1\|1807248_1807566_+\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012508424.1\|1816436_1817147_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_011060.1\|WP_041526489.1\|1805106_1806180_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277343
NC_011060.1\|WP_012508425.1\|1817136_1818963_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274368
NC_011060.1\|WP_012508419.1\|1810729_1811884_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185285
NC_011060.1\|WP_012508407.1\|1791912_1792575_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NC_011060.1\|WP_012508416.1\|1807809_1808391_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379173
NC_011060.1\|WP_012508420.1\|1811956_1812109_-\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572
NC_011060.1\|WP_012508427.1\|1820140_1821337_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133060
NC_011060.1\|WP_012508421.1\|1812419_1813991_+\|CHAD-domain-containing-protein	unknown	unknown	gnl\|CDD\|214880
NC_011060.1\|WP_041526792.1\|1809787_1810333_-\|arginine-decarboxylase,-pyruvoyl-dependent	unknown	unknown	gnl\|CDD\|234933

Protein	Function_ID	Function_description	E-value
NC_011060.1\|WP_190273981.1\|1792725_1801161_-\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|277369	cd08162, MPP_PhoA_N, Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.96356e-78
NC_011060.1\|WP_012508426.1\|1819045_1820107_+\|glycosyltransferase	gnl\|CDD\|133016	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.	2.59603e-26
NC_011060.1\|WP_012508409.1\|1801514_1801778_-\|hypothetical-protein	gnl\|CDD\|237553	PRK13905, murB, UDP-N-acetylmuramate dehydrogenase.	0.00256283
NC_011060.1\|WP_012508410.1\|1801850_1802513_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.49518e-05
NC_011060.1\|WP_150085821.1\|1814920_1816366_+\|alkaline-phosphatase	gnl\|CDD\|293736	cd16012, ALP, Alkaline Phosphatase. Alkaline phosphatases are non-specific membrane-bound phosphomonoesterases that catalyze the hydrolysis reaction via a phosphoseryl intermediate to produce inorganic phosphate and the corresponding alcohol, optimally at high pH. Alkaline phosphatase exists as a dimer, each monomer binding 2 zinc atoms and one magnesium atom, which are essential for enzymatic activity. Mammalian alkaline phosphatase is divided into four isozymes depending upon the site of tissue expression. They are Intestinal ALP, Placental ALP, Germ cell ALP and tissue nonspecific alkaline phosphatase or liver/bone/kidney (L/B/K) ALP.	2.40722e-95
NC_011060.1\|WP_012508412.1\|1803529_1804990_+\|hypothetical-protein	gnl\|CDD\|238535	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is related to renal and intestinal Na+/sulfate cotransporters and a few putative bacterial permeases. The SLC13-type proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium and various anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease is composed of 8-13 transmembrane helices.	5.92085e-10
NC_011060.1\|WP_012508421.1\|1812419_1813991_+\|CHAD-domain-containing-protein	gnl\|CDD\|214880	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family. It has conserved histidines that may chelate metals.	1.03785e-59
NC_011060.1\|WP_012508422.1\|1813987_1814737_+\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.4599e-42
NC_011060.1\|WP_012508411.1\|1802538_1803252_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.63426e-31
NC_011060.1\|WP_012508424.1\|1816436_1817147_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.41063e-80
NC_011060.1\|WP_041526489.1\|1805106_1806180_-\|metallophosphoesterase	gnl\|CDD\|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.94905e-07
NC_011060.1\|WP_012508419.1\|1810729_1811884_+\|hypothetical-protein	gnl\|CDD\|185285	PRK15387, PRK15387, type III secretion system effector E3 ubiquitin transferase SspH2.	1.58819e-13
NC_011060.1\|WP_012508407.1\|1791912_1792575_+\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	2.12653e-46
NC_011060.1\|WP_012508416.1\|1807809_1808391_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	2.63091e-14
NC_011060.1\|WP_012508420.1\|1811956_1812109_-\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	1.11982e-07
NC_011060.1\|WP_012508427.1\|1820140_1821337_+\|glycosyltransferase	gnl\|CDD\|133060	cd06438, EpsO_like, EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.	1.19146e-77
NC_011060.1\|WP_012508425.1\|1817136_1818963_+\|PAS-domain-S-box-protein	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	1.40514e-90
NC_011060.1\|WP_041526792.1\|1809787_1810333_-\|arginine-decarboxylase,-pyruvoyl-dependent	gnl\|CDD\|234933	PRK01285, PRK01285, pyruvoyl-dependent arginine decarboxylase; Reviewed.	6.77934e-89

>NC_011060.1|WP_012508416.1|1807809_1808391_+|helix-turn-helix-domain-containing-protein
MKDILSHNDSLEFLVQELKTARLEKNLSIDDVSRLTNIKKNYLENIENGNFSFLPKSYVFACIKSYMKEIGLEGFEALEQCKKDLQLHKQLNKEEIAKSGSELCETKPQEQINRNNSQPVKSILTLSIGILVGVLTGVGLSYRNQSVEAPVHRLPATTARPSVNPVDTNDRIKQRSDSTAKIQRKKSLHALIP
>NC_011060.1|WP_012508415.1|1807248_1807566_+|hypothetical-protein
MHNRLPWPQTINDAAERIIAIMNEHERTKVRAISEDKLKKLCFSLGIYVRHELGLFEGNDALIKACAISEHGDFESFHFLNDPDTASGVILEAIWNRLHTLTPDR
>NC_011060.1|WP_012508414.1|1806682_1807042_+|hypothetical-protein
MSDIKPYKIVIEWCGEEDFYFSCDSTRSDIEKTGNSPITNEAKTFPFMAQAMGNVLRKLRKEHISFPFFLVALAINHRNLLHEIDQLLHLLHHHLEKEQVPGTFFCHISSSKPKLSSIS
>NC_011060.1|WP_041526489.1|1805106_1806180_-|metallophosphoesterase
MIPQIKKHPHLDSLLKRAKPVTLDHSSKVLVLSDLHMGNGGRLDEFRQNSGLVKAMLERYYLPEKFSLVLNGDVEELFKFSLESIASQWNEFYDLFLKFERHGFFLKTWGNHDAALLDKKEYRLASSLVESVKFHYGHDTLLLFHGHQAALFLWQTCSILSRTIIFFLRYLAKPLGIRNTSVAYNSRKRFAIEQSIYEFSNHSRIVSIIGHTHRPLFESLSKADFLNYRIEELCRAYSSADNEKRTTIKQKIVELKAELDGCYKKGKVIGLRSGIYNNITIPSVFNSGCTIGKRGITALEIEGSTIRLVYWYNGKQNRKFISERDNRPMELASTGFSRIVLNEDSLDYVFSRLHLLA
>NC_011060.1|WP_012508412.1|1803529_1804990_+|hypothetical-protein
MNLLQNSTIILTGFLLSEMLVAARMHHRLIHFLLRHSGKNLGTLLTAILLISYTLSIFISHTIVLISMIPIINRMLSLVEHNDERRVAASLFYLALTFGSNTGGMASLTGSPQNMLAITLAEFFTFEGRNIITFFSWLGVGVPATLILLFCGWVIILVTAKPFCIPSLFSESSDKLAVLPHKPLLFLIGNLLLISTLSALQFLYTPAPIFFTLNTIDLGFLLYGTAFLFVALILPKTKISLRALFMNTIFLLLHLFLFPLIFISRLCRELESRMGVPMKNSYGAIDNLILQIVQRVWTRCFREPIANLDSPNANSMLSINLIMKDLPYFGIFLLSIVGMILFGLLKAWDNPATPELDSSLLTLTKSTILKTIPPVSNHFLQLLSLIIVIIFSSELLSNTALILIFTPLSSDLALLTSLSPIMMLLTITIAASSAFMTPVATAANTLAFGGIEHVSLKMILLPGLFMNLVAALWTALLFSLLTGLLS
>NC_011060.1|WP_012508411.1|1802538_1803252_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MLPNFLLTRVYGVENLAKAECASIYVFNHNNSFEVLMVPALLMYHLGGRSISFVIDWMYGKVPILGFLMNLFDPVYVYHKRSTLSSIESIRPTAPSADAIERCTEKLRAGRSIGIFPEGKRNRDSKTLLRGKSGVGHIALQSGSPVVPVGIDFNCRITKGKIPVLGRTIVRIGQPIVFQQRTERYRAMISSLSGCSTQRSELNQMAAEVTHEIMHCIAELSGKLYQEPFPRNRRSFS
>NC_011060.1|WP_012508410.1|1801850_1802513_-|GNAT-family-N-acetyltransferase
MSSVTVIRIESAADRASALEVIRQVFCEEKKWISSVQNQIPEEFAGNRGFSWFLAKIDGRPAGVLRLLYDPSFDLPEEYDVKFMPGMTIEKLKSAGRYAEIGRFMILEEFRRKPGVALQLMRAATEEVIERDYTHFITDVFAGEVHSPLNFHTRVLGFEVVGTHVFGELNCSSTRIILMLDIIKLYSRIKDSRSRIYRELTDGLRGIFERKAALSQMTRG
>NC_011060.1|WP_012508409.1|1801514_1801778_-|hypothetical-protein
MLRLDELRAEIKGEFFLQEELKNHDVKKVEALADIIIKPAGKKDLIKLLRLLENASYPHIVINSKGRVVFPDRRFHGAVIVTDLNKE
>NC_011060.1|WP_190273981.1|1792725_1801161_-|esterase-like-activity-of-phytase-family-protein
MGTEGSAFEAYLAGDRKMIAESDAILQSAINSIKTEKPNILLISGDLTKDGEKLSHEAFAAYLAGIEATGTKVYVIPGNHDINNPDAMSYSGDSSTPVASVTPEQFASIYDDFGYGEALYRDPNSLSYVAEASDKLWILGIDSCEYDTNIADGAPETDGSLSAATKAWVLEKLAEAKLQGITVIGMMHHNLVEHYSLQDELFGDYVIDDSVNLANDFAEAGLSMIFTGHYHANDIVQVTDSGLYEIETGSLVTRPSPVRTVTINGDGSVEVSSTSVSEINYDLGEFDTFKAYATNFLHTGLVQLATYYLMTTFGITQESAAQVAPLFAAAMAAHYMGDEEPDATTLATIQGLAASGDAMKIQLAGALQSLWMDSMTADNNTTISIPDFWEEMTSDDLGEMLAVEYGLTPFQHYQLYGDAMGITIGEHVLIGSIELPGSEITAYHSGSKTAFVIGGSNELYVVSLADPSRPIRVRTITLAGNAQSVAVNADGLIAVAVDQLATVAGSTATYHANGLVQFFTTDATGIHSAGQVTVGSLPDSITFNASGTLLVTANEGEPNLFYGTDDDSMDPVGTISIIEVNPVTPSSSVVTTLGFDAWNDQLEQLRNKGVRFSGDDAADGVIGNLVSQDMEPEYVTISGSKAYVTLQENNAIAVVDLVKKVITAINPVGLKDWDRGTPEATTFEFDITYPGERPDFDHDGVVDNGEVTAGGLSGLWYDGKETIDGTAYDIYYTITDRGPQAASIGDRAGDNPADPAKGGKIFDDPDFPITVYKLGQVNGEVVTLGSTTLKVPDGAGGFRNATGLSELDRNDAAYQLIGKDADGYNTYELLAKDQFGLDTESILHLTIAGLNGGNPVFAVADEYGPQIALFDVATGNLVKRIVPAGIVFSAATNIGYADIPEYTLQTLPSIYSTINNNRGFEAMAYNSKDGLLYTFIQSPLHQAGYDNQEVIRIVAVNPVSGEAVHEYLYALSGEKGQDKIGDAVYDAERDLFYVIERDSGATSNANKSIFEVDLTGATDTLAYTIGQDGHSWEELLGDGVTQPELAHTESLADALAGEVTFVHKNELLNIPSLGIDARFDKSEGLALKADGSLVVAFDNDFLHVEGRADNILVEIGYNTLAVDTSDKDGGIDPGYRSFYGMRMPDGVDSYEFNGETFVIMANEGDGRIRSDVANFTVESAYNKKYLTITKTLPEGATLVDTIIDPLTGESLFITLSDNSDPAAHYVKTDDEFFLTLKYGWLSNDAFWSDETRLVDYDDLTKLNQYLQDEATKSGEIGRLKTVNTEVYLSDESAADEAPEQVIGFGGRSISIMDSKGNLVYDSGDLIEQAAIAAGVYDDGRSDDKGTEPENVTLAEVEGHVYAYVGLERANSVVVFDVTNPYNVSYLDLIDVEGDTGFVAPEGLTTGDGMLIVSSETTPGLAIYSLPEYAIPTYTLQLLHFADAEAGLLASETAPNLAALVDKFEDEYANSITLAGGDNFIPGPFLAAGTDSSVIDELNEANGSSLAPTATVPIGAVDIAIHNAIGVEASAIGNHEFDLGSRVLKDAVTPASTGADFPFISANLDFSGDSDLRSTFVDTTAIDGLEEASTLNGKIVPSAVITENGEKIGLVGATTQLLRVISSPSGTVVDDGSTGSDNMDLLAAALQPVIDDLIAQGVNKIILISHLQVIANEKSLAGKLSGVDIILAAGSNTRLGDADDQAVAFEGHAATFADTYPLQMSDKDGNTTLIVNTDNEFTYLGRLVVDFDADGHIITSSLAENISINGAYAATDVNVAEAWGVTVEELDTTAFAEGTRGDAVESLVTAVQEVINVKDANVYGYSDVYLEGERATVRSEESNLGDLSADANAYAAELAMGEAAADTFVVSLKNGGGIRAQIGTISAPDPVDGTVDKLPPTDGSVSQLDVENSLRFNNQLMIFDTTAEGLKAILEHGVAAGTLQGRFPQIGGVSFSWDPDYPAGSRVSDISLVGDDYHINLYNDGELLRDVPDTISLVTLSFLANGGDGYPMKANGSNFRYITVEDDGSYTLSAAVDESLDFTVPANVPGGATVVGEQAAFETYMETFHATADKAYDQADTSASEDLRIQNLNEREEAVLNPDTGREIENVTVSEDGTLDYRVLADAFTDVDENDSLTYTATLADGSALPSWLTFSASHHDKETMEAYFLTGGSEKRSTDSASAITAMVTGEKTDAGNLSWTTGDPVGGALTTIAETFRADYGFAIGVASTVEFSHATPAGVVSHNVNRGNTWAISHEILTETKPEVVIGAGLDSYFAKAGVSKTPTDTDSDADNNGFNDEYDAFHNGTVKPYTEKVEFVERKAGVDGGDALAAEAATVDLSSGERLFGLFGTSGGNFEYYNVEDTPGTVSITRSTGDGTPAIDEDPTMAEMANAALSVLNQDADGFFVMFEQGDIDWSNHANDYEAMIGGVYDLDLAVTEVESFVDLGSNGIDWSNTLVIVTSDHSNSYMRNESVLGVGNLGVVGTDVTYASGGHTNELVTVTARGAGATYFGELAGQIYDGTEIIDNTQIYTAMMNAAENAGAEHIILMIGDGMNVEHEIAASRYLYGEDFGLSWDDWGTLEDGWTGYATTWDVSSYNTYAALNGVASYDSATYDPLIGYDPEQGGDTPYPVAMTFSGTPTHSNVGSIEVKVTATDESGATASDMFTLTVTDTTAPAVVTFTPVDGAAGVAIGSNIELIFSEAIQKGSGTIEIHSGSPGGAVVESYNAATSANLTISGTMLTINPTADLKYQTQYYVTFGEGSIYDNSGNHYAGGTAYDFTTGADPFADNNGGTSTGTVLAGVGALGILAWLIF
>NC_011060.1|WP_012508407.1|1791912_1792575_+|HAD-family-hydrolase
MTFKAVIFDLDGTLLNTLQDIVNTLNTVLAQHDYPIHTLDECRFLVGHGMRELVKKALPEEAGTEEIIDLMLKDLMMHYADNWNRYSRPYPGISTLLDKLTERGIKKAILSNKANHFTRLCAEELLKEWNFDVVMGHHSGIAHKPDPEGALLVARMLNEEPGSILYVGDSGIDMLTATRAGMYPLGVLWGFRPESELLEFGAKTVVQHPEEIITLLEEIL
>NC_011060.1|WP_041526792.1|1809787_1810333_-|arginine-decarboxylase,-pyruvoyl-dependent
MSFVPAKVFFTKGVGRHKEYLSSFELALRDAKIEKCNLVTVSSIFPPHCERISVEEGLTLLTPGQITFTVMARNSTNEYNRLIAASVGVAIPADETQYGYLSEHHPYGESAEQSGEYAEDLAATMLATTLGIEFDPNKDWDEREGIYKMSHKIINSYNITATAEGENGLWTTVISCAVLLP
>NC_011060.1|WP_012508419.1|1810729_1811884_+|hypothetical-protein
MTTTVTKVLFADIMGHLDGKGDIDCSNRGLTSLEGCPGIVAGNFNCSGNQLTSLESGPHNVGGDFSCSNNKLTTLEAGPEEVLWDYDCSGNQLNSLTGAPKKVHGNFDCSTNQLTTLQGSLKKVGNDFSCSNNLLTSLKGAPHKVGGDFSCSDNQLTTLEGVPHEVGDFDCSNNQLATLDGSPEEVHGDFDCSHNQLASLAGAPHFVIGNFFCAGNPLTSLKGGPNFVYGNFDCSNHQLVSLKGAPKEVEGNFNCSENQLSSLAGAPQEVRDFDCSGNQLTTLESAPHKVSGNFSCSANQLTSLTGAPKKVKGSFNCSNNQLSSLDGAPKKVKGDFDCSGNQLTTLDGTLKKVGGDFICGGNTGLFSEDQARVICSIKGNCITV
>NC_011060.1|WP_012508420.1|1811956_1812109_-|DUF2934-domain-containing-protein
MEKNDETIVENQELREEEIRLAAYYLWKEKGENHGSDTEDWLEAEESLND
>NC_011060.1|WP_012508421.1|1812419_1813991_+|CHAD-domain-containing-protein
MHTTPRTVYLILNQSAGSELLPENLLPSGWSIRAGLSRKEVREFYDTFEWQAFNEGIAVVKKRRTLLLADLNTGKETSSLPFAGSPSSFFSDTLPSSHLKEILTSLTTIRAFVKLCSIEAISTSYRILDDNQKTIATLTSEVLSLANKEKQEPFAHIFSLFPLKGFGDEMELLEKSLSSNHHEVRELCFRELFVLNMHAAGRNIQDYSSKIQLDLDSDAPVHNSVRQLLQSTFSVMCANEEGIKRQIDSEFLHDYRVAIRRTRSILKQLKGVFDPEETTYYLNFFRELGKQTSALRDQDVYLLRQATYFDYLPPFLQLSLRPFFTDIALSRKKLHKTLCRYLASSEYRSFLGEWDAFAHRQSTPDPERSPNASLSTGDVALHTIKKAWKKVIRHGRQISRETTDAELHALRIDCKKLRYLLEFFSSIFPHKSVAPVIGQLKELQDNLGDFVDYAVQLHFLRERLSALSPGKEELLLAASTGALIATLFQKQEEVRSKFHKTFASFDHEKTSELFDDLLNENPK
>NC_011060.1|WP_012508422.1|1813987_1814737_+|AAA-family-ATPase
MKTIALYSIKGGVGKTATAVNLSYLSSLLSPPTLICDLDPQGASSYYFRITASKKYNSDKFLKGNKKIYRNIKATDYENLDLLPSDFSYRNLDIELSEEKKPQKKLKKNLEELSDEYQFIFFDCPPNLTLLSESVFAASDVILVPLIPTTLSIRTYIQLLDFFKAGKLDSTKIRPFFTLVEKQKKLHRDIIEEFRDTPGFLTQSIPYNSEVEKMGIYRAPLNAILPNALASKAYRKLWEELHSVLEKNN
>NC_011060.1|WP_150085821.1|1814920_1816366_+|alkaline-phosphatase
MVCTRLKIVLLLIVTVSVSACYFALQTLQAAPKGNAAVPRYIFLFIGDGMGAAQVELSSALLHDAQSFTMTSLPVLGMATTHAADRFITDSAAAGTALATGWKTTVGTISMEGNHLDTLRTIAEMAKAKGMKVGIVSSVGIDDATPACFYAHNATRKNVYDIAVQMASSGFDYFGGGYSVGNFPENQAKTKVFRGDIADLMHSSHYVIARNTTELKAVKPGTPCWAYTDYDAKGALSFAMDRRNEEIDLAEFTREGIRLLYNPKGFFMMVEGGKIDWACHANDATAAAHDIKAFEKAIGEAFAFYQRHPGETLLVVTADHECGGLTLGRRANGYETRLDLLHHQNVSQQRFSEKVSAWKKQGAVTFPMALDSVKVYFGPGNVEADSSLALSEADRNMLQEAYTATMRADFSGTQHIDAFTPAVSALLNNRAGIGWNSNAHTAVPVQVFAIGRGAEAFTGFYDNTDIANKIMQIAKLKRPAR
>NC_011060.1|WP_012508424.1|1816436_1817147_+|response-regulator-transcription-factor
MQEPLILVVEDDPNLAKLLEYNLNRAGYKSHLSGTAEDALEQLSRKSFDLVLLDVMLPGMDGFELCRIIRQHQLYKDLPIIMVTAKGEEIDRILGFELGIDDYVVKPFSPRELNLRIRAILKRDRRQGGKIEELLKAGDLEIDLVRHIVTLDGKELVVTLMEFKLLVALLKRKGEAQSRERLLSDVWDVDKSINTRTIDTHITRIREKLGETGRMIKTVRGLGYKFEEKESDDHAE
>NC_011060.1|WP_012508425.1|1817136_1818963_+|PAS-domain-S-box-protein
MLNKLSVKLALVIGMIVFCSVVVSYLTARHQVTESVVMATKQGLYRDLLLNKEMIEQKPRQWQTSEQVNIWAKQVARTLEVRVTLIDLDGMVISDSSLPPSKIALMENHKERPEVKNALENGYGENTRYSQTVKEYQLYMAVPVGLPKPYAILRFSKPLYDIGFFDTGIRQEITPSLFLALFLSLIAGFLAAFFLARPIRTLAFTAQKRIHGDISGSITLHRKDETGVIARALNVMTDEIRKLQHREEWLRAVFSGIREAIIVTDATGDITMVNPAASRMFRINGSMFKPRPLSHLSDSKLQELFARVHSTRVTLHKEELSLMTTKGARIMQISSMPLTKEELFTGTVFVLNDITKLRNLEKIRRDFVASVSHELRTPLTVITGYTETLLDGAMHEPEHATAFLQTILLATEQLTALVNDVLDLSRIESGQIEYTFSAVDLKRMVQKSVDLLKPALDKKQIRLDIHIPDGLPTVYADPRYLDIVVRNLLDNAIKYVDDQNGKIRITAFKSDDHLRLEIEDNGIGIAKSDLGRIFERFYRVDKARSRERGGTGLGLAIVKHIVMAHKGNIDVRSRVNLGSVFTLMLRTEWVDEEGSPLKQNPQTTQDPL
>NC_011060.1|WP_012508426.1|1819045_1820107_+|glycosyltransferase
MRETSWDIDCVIIGVNCEKTIERCLRSILASSYPGHLLHIYYCDGGSTDSSIAIARRFAQVRVFELNAEYPTPGAGRNQGWKNSSSPFVQFLDSDTILDSLWLSKAAEAMNDNRIGAVFGLRQEIHPERSVYNWIGNLEWNGPAGESDCFGGDVCIRRSALEKTDGYDETLVGGEDPELSRRIIRAGWHLIRLNAPMTMHDLAMTTVKQYMRRSFRSGYAYGAVRSREAAVKSSFWKYDFQKIVIKSGGFFCSTALSLLLMLSPLPVIVKIAALFLPLIGLSLLLSPRLFKVEKFMQEHHLNNKEAKIYGWHCSMVVLPQFFGIIRFYVGKLFNKPLKNKRRNLKTALSTAGS
>NC_011060.1|WP_012508427.1|1820140_1821337_+|glycosyltransferase
MIIAELILKGMLVVLALPAAYLLLSTVAAYFFKKESSQENRFLNIGVLIPAHNEENGIAQAVTDVLASNYPTEKITIFVVADNCTDRTAEKARQAGALVFERFDEVSRGKGQALDWFLKNCKESYRHTDAITVIDADVSADSNYLREISASLSQPGIQVIQGYNGVGNPEAGWRPALIDAAFNVFNHLRMAGSVKLSGTAGLKGIGMAFRTELLARYGWPCHSIVEDMEFTFLLLEDGISVHYNPDAIVRSEMVTAGKNASTQRSRWEGGRFMLVRKMSAPLFRLFATTKDRRYLFALAELTVPPLSLLVILFSLATAGAFLLLKGGWLLLALSFWLILLFYVASGQIQRHAPLSTWFYLAAAPIYILWKIPLYAAMLLKKGSSEWVRTARESEQKKS

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Crispr_ID: NC_011060_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011060_6

2544259-2546302

TypeIII

Consensus_repeat	Method
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	PILER-CR
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CRISPRCasFinder
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CRT

28 spacers

cas1,cas2,csx15,csx23,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7

The CRISPR arrays of NC_011060_6

>merge|NC_011060|6|2544259-2546302|PILER-CR,CRISPRCasFinder,CRT
CATCATATCTTATTGCACGCATAGCGGATTGAAACTATTCATTGATTGCCAGAGTGTAACATTCTTTGTTTCCTCATCATATCTTATTGCACGCATAGCGGATTGAAACTTTTCAGCTCGTCATCACTGATCTCAAACCACTGATCATCATATCTTATTGCACGCATAGCGGATTGAAACAAAGGAATGCAACAGATAAGCTACCAATAACGGCCCCATCATATCTTATTGCACGCATAGCGGATTGAAACTAATGCAATAAGTGCTGGAGCCGGAAAAGATAGTTAGCCATCATATCTTATTGCACGCATAGCGGATTGAAACATCCTTTAGCACCTCTAAAGGGCTATTCCACGCTGACATCATATCTTATTGCACGCATAGCGGATTGAAACATACCAGAAAAGCAGCGCCACCGGCACGTGTGATGTCTTCATCATATCTTATTGCACGCATAGCGGATTGAAACCTTACTCAGACTTTCATCTGCTGAATAAGCAGAATAATCATCATATCTTATTGCACGCATAGCGGATTGAAACCTCTATTATATGCATAGGTGCTTGTCCCTCTGATAAACATCATATCTTATTGCACGCATAGCGGATTGAAACTTTCTTGTTTTTGCCCGCCACCATTACTGTGATAGCTACATCATATCTTATTGCACGCATAGCGGATTGAAACAGCAGGTTCATATACATCCCGATCACTGTTTTCAGACATCATATCTTATTGCACGCATAGCGGATTGAAACTAAAATAACAAAACAAACGCTCCGGCAATTGCCAGCACATCATATCTTATTGCACGCATAGCGGATTGAAACTTGGTTCTCGACCAGATCATAGACGATCTTGAGCACATCATATCTTATTGCACGCATAGCGGATTGAAACAAGAGCTTTGACCTCATTCATCAGATCAAACAGCAACATCATATCTTATTGCACGCATAGCGGATTGAAACCATGGTGACGGGGTTATAGAGTTGAGCGCGGTATAAACATCATATCTTATTGCACGCATAGCGGATTGAAACCTGCGCATCGACAAGCGCATCCGGAAAGGCCTGCCAGCATCATATCTTATTGCACGCATAGCGGATTGAAACGAATTTCTCGATCATTAAATGGCCAGTCATAATACATCATATCTTATTGCACGCATAGCGGATTGAAACTGGATAATTTTTGTTCCATTTGAGTAAATTGTTTTCATCATATCTTATTGCACGCATAGCGGATTGAAACGCCAAAAACATTGCATCTTTCTGCTCTTCGGTAACGATACATCATATCTTATTGCACGCATAGCGGATTGAAACGAGCTCATTGATAACTGTCGCGAGGGCTTGCTCGAGCATCATATCTTATTGCACGCATAGCGGATTGAAACTCAGATTAAAGTTGTTTATGCAACGTTTTTTGCAATTCATCATATCTTATTGCACGCATAGCGGATTGAAACGTTTTGAAAAGCAGCCGTGTCTATGATGGTTGTCTCATCATATCTTATTGCACGCATAGCGGATTGAAACTCAGTGAAAATCATCAGTACTGCATTCTTGTGTTTCATCATATCTTATTGCACGCATAGCGGATTGAAACCCACATCCGTTGATTGATGCAATTATCCATTGTGACATCATATCTTATTGCACGCATAGCGGATTGAAACTTTAAGGACATCCCCGCCAAGCCTATTTTGATAGAAATCATCATATCTTATTGCACGCATAGCGGATTGAAACCCGTTTAAGTTTTTGCCCTTCCCTTTTTTGCTTCTGCATCATATCTTATTGCACGCATAGCGGATTGAAACTAAGCAACAAATCGGCCTCCATTACTTCCTGCTGCTCATCATATCTTATTGCACGCATAGCGGATTGAAACTGTTCCCGCGGAAGCGATTACCACCGACGTGCTTCCAGCATCATATCTTATTGCACGCATAGCGGATTGAAACCAACATACTTTCTTTTCTGTCAGGCAAGCAAAGCAGTTCCATCATATCTTATTGCACGCATAGCGGATTGAAAAT

>NC_011060|6|3|2544259-2546227|PILER-CR
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TATTCATTGATTGCCAGAGTGTAACATTCTTTGTTTCCT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTTTCAGCTCGTCATCACTGATCTCAAACCACTGAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	AAAGGAATGCAACAGATAAGCTACCAATAACGGCCC
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TAATGCAATAAGTGCTGGAGCCGGAAAAGATAGTTAGC
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	ATCCTTTAGCACCTCTAAAGGGCTATTCCACGCTGA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	ATACCAGAAAAGCAGCGCCACCGGCACGTGTGATGTCTT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CTTACTCAGACTTTCATCTGCTGAATAAGCAGAATAAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CTCTATTATATGCATAGGTGCTTGTCCCTCTGATAAA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTTCTTGTTTTTGCCCGCCACCATTACTGTGATAGCTA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	AGCAGGTTCATATACATCCCGATCACTGTTTTCAGA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TAAAATAACAAAACAAACGCTCCGGCAATTGCCAGCA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTGGTTCTCGACCAGATCATAGACGATCTTGAGCA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	AAGAGCTTTGACCTCATTCATCAGATCAAACAGCAA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CATGGTGACGGGGTTATAGAGTTGAGCGCGGTATAAA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CTGCGCATCGACAAGCGCATCCGGAAAGGCCTGCCAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GAATTTCTCGATCATTAAATGGCCAGTCATAATA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TGGATAATTTTTGTTCCATTTGAGTAAATTGTTTT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GCCAAAAACATTGCATCTTTCTGCTCTTCGGTAACGATA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GAGCTCATTGATAACTGTCGCGAGGGCTTGCTCGAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TCAGATTAAAGTTGTTTATGCAACGTTTTTTGCAATT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GTTTTGAAAAGCAGCCGTGTCTATGATGGTTGTCT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TCAGTGAAAATCATCAGTACTGCATTCTTGTGTTT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CCACATCCGTTGATTGATGCAATTATCCATTGTGA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTTAAGGACATCCCCGCCAAGCCTATTTTGATAGAAAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CCGTTTAAGTTTTTGCCCTTCCCTTTTTTGCTTCTG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TAAGCAACAAATCGGCCTCCATTACTTCCTGCTGCT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TGTTCCCGCGGAAGCGATTACCACCGACGTGCTTCCAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC

>NC_011060|6|5|2544259-2546302|CRISPRCasFinder
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TATTCATTGATTGCCAGAGTGTAACATTCTTTGTTTCCT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTTTCAGCTCGTCATCACTGATCTCAAACCACTGAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	AAAGGAATGCAACAGATAAGCTACCAATAACGGCCC
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TAATGCAATAAGTGCTGGAGCCGGAAAAGATAGTTAGC
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	ATCCTTTAGCACCTCTAAAGGGCTATTCCACGCTGA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	ATACCAGAAAAGCAGCGCCACCGGCACGTGTGATGTCTT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CTTACTCAGACTTTCATCTGCTGAATAAGCAGAATAAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CTCTATTATATGCATAGGTGCTTGTCCCTCTGATAAA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTTCTTGTTTTTGCCCGCCACCATTACTGTGATAGCTA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	AGCAGGTTCATATACATCCCGATCACTGTTTTCAGA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TAAAATAACAAAACAAACGCTCCGGCAATTGCCAGCA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTGGTTCTCGACCAGATCATAGACGATCTTGAGCA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	AAGAGCTTTGACCTCATTCATCAGATCAAACAGCAA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CATGGTGACGGGGTTATAGAGTTGAGCGCGGTATAAA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CTGCGCATCGACAAGCGCATCCGGAAAGGCCTGCCAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GAATTTCTCGATCATTAAATGGCCAGTCATAATA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TGGATAATTTTTGTTCCATTTGAGTAAATTGTTTT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GCCAAAAACATTGCATCTTTCTGCTCTTCGGTAACGATA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GAGCTCATTGATAACTGTCGCGAGGGCTTGCTCGAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TCAGATTAAAGTTGTTTATGCAACGTTTTTTGCAATT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GTTTTGAAAAGCAGCCGTGTCTATGATGGTTGTCT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TCAGTGAAAATCATCAGTACTGCATTCTTGTGTTT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CCACATCCGTTGATTGATGCAATTATCCATTGTGA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTTAAGGACATCCCCGCCAAGCCTATTTTGATAGAAAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CCGTTTAAGTTTTTGCCCTTCCCTTTTTTGCTTCTG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TAAGCAACAAATCGGCCTCCATTACTTCCTGCTGCT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TGTTCCCGCGGAAGCGATTACCACCGACGTGCTTCCAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CAACATACTTTCTTTTCTGTCAGGCAAGCAAAGCAGTTC
CATCATATCTTATTGCACGCATAGCGGATTGAAAAT

>NC_011060|6|2|2544259-2546301|CRT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TATTCATTGATTGCCAGAGTGTAACATTCTTTGTTTCCT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTTTCAGCTCGTCATCACTGATCTCAAACCACTGAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	AAAGGAATGCAACAGATAAGCTACCAATAACGGCCC
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TAATGCAATAAGTGCTGGAGCCGGAAAAGATAGTTAGC
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	ATCCTTTAGCACCTCTAAAGGGCTATTCCACGCTGA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	ATACCAGAAAAGCAGCGCCACCGGCACGTGTGATGTCTT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CTTACTCAGACTTTCATCTGCTGAATAAGCAGAATAAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CTCTATTATATGCATAGGTGCTTGTCCCTCTGATAAA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTTCTTGTTTTTGCCCGCCACCATTACTGTGATAGCTA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	AGCAGGTTCATATACATCCCGATCACTGTTTTCAGA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TAAAATAACAAAACAAACGCTCCGGCAATTGCCAGCA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTGGTTCTCGACCAGATCATAGACGATCTTGAGCA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	AAGAGCTTTGACCTCATTCATCAGATCAAACAGCAA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CATGGTGACGGGGTTATAGAGTTGAGCGCGGTATAAA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CTGCGCATCGACAAGCGCATCCGGAAAGGCCTGCCAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GAATTTCTCGATCATTAAATGGCCAGTCATAATA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TGGATAATTTTTGTTCCATTTGAGTAAATTGTTTT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GCCAAAAACATTGCATCTTTCTGCTCTTCGGTAACGATA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GAGCTCATTGATAACTGTCGCGAGGGCTTGCTCGAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TCAGATTAAAGTTGTTTATGCAACGTTTTTTGCAATT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	GTTTTGAAAAGCAGCCGTGTCTATGATGGTTGTCT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TCAGTGAAAATCATCAGTACTGCATTCTTGTGTTT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CCACATCCGTTGATTGATGCAATTATCCATTGTGA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TTTAAGGACATCCCCGCCAAGCCTATTTTGATAGAAAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CCGTTTAAGTTTTTGCCCTTCCCTTTTTTGCTTCTG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TAAGCAACAAATCGGCCTCCATTACTTCCTGCTGCT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TGTTCCCGCGGAAGCGATTACCACCGACGTGCTTCCAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CAACATACTTTCTTTTCTGTCAGGCAAGCAAAGCAGTTC
CATCATATCTTATTGCACGCATAGCGGATTGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011060.1\|WP_012509119.1\|2549169_2550255_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NC_011060.1\|WP_012509113.1\|2537648_2539934_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_011060.1\|WP_012509118.1\|2547360_2548551_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_011060.1\|WP_012509111.1\|2536342_2537200_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NC_011060.1\|WP_012509109.1\|2533977_2535276_-\|hypothetical-protein	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl\|CDD\|224251
NC_011060.1\|WP_012509125.1\|2557290_2557842_-\|discoidin-domain-containing-protein	unknown	unknown	gnl\|CDD\|366285
NC_011060.1\|WP_012509112.1\|2537215_2537635_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NC_011060.1\|WP_012509126.1\|2558247_2558475_+\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012509117.1\|2541824_2544008_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_011060.1\|WP_012509110.1\|2535281_2536346_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|187794
NC_011060.1\|WP_150085863.1\|2555679_2556246_-\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012509127.1\|2558552_2559026_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176861
NC_011060.1\|WP_012509116.1\|2541386_2541671_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_011060.1\|WP_012509114.1\|2540374_2540770_-\|hypothetical-protein	csx23	mkCas0160_csx23_CAS-III-D	unknown
NC_011060.1\|WP_041526550.1\|2556426_2557170_-\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012509120.1\|2550270_2550948_+\|phospholipase	unknown	unknown	gnl\|CDD\|223477
NC_011060.1\|WP_012509122.1\|2554891_2555434_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|366867
NC_011060.1\|WP_012509121.1\|2551026_2554749_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NC_011060.1\|WP_012509115.1\|2540777_2541350_-\|hypothetical-protein	csx15	cd09766_csx15_CAS-I:CAS-III	gnl\|CDD\|187735
NC_011060.1\|WP_083765335.1\|2539945_2540107_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187810

Protein	Function_ID	Function_description	E-value
NC_011060.1\|WP_012509113.1\|2537648_2539934_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	1.03902e-95
NC_011060.1\|WP_012509118.1\|2547360_2548551_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.35884e-38
NC_011060.1\|WP_012509111.1\|2536342_2537200_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.70958e-70
NC_011060.1\|WP_012509109.1\|2533977_2535276_-\|hypothetical-protein	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.42458e-05
NC_011060.1\|WP_012509112.1\|2537215_2537635_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.19826e-25
NC_011060.1\|WP_012509117.1\|2541824_2544008_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.02491e-104
NC_011060.1\|WP_012509110.1\|2535281_2536346_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.65176e-29
NC_011060.1\|WP_012509122.1\|2554891_2555434_-\|HD-domain-containing-protein	gnl\|CDD\|366867	pfam01966, HD, HD domain. HD domains are metal dependent phosphohydrolases.	0.00466472
NC_011060.1\|WP_012509127.1\|2558552_2559026_-\|SRPBCC-family-protein	gnl\|CDD\|176861	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	5.28032e-51
NC_011060.1\|WP_012509116.1\|2541386_2541671_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.52342e-28
NC_011060.1\|WP_012509125.1\|2557290_2557842_-\|discoidin-domain-containing-protein	gnl\|CDD\|366285	pfam00754, F5_F8_type_C, F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.	0.000421342
NC_011060.1\|WP_012509120.1\|2550270_2550948_+\|phospholipase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	1.1382e-29
NC_011060.1\|WP_012509115.1\|2540777_2541350_-\|hypothetical-protein	gnl\|CDD\|187735	cd09766, Csx15_I-U, CRISPR/Cas system-associated protein Csx15. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small protein loosely associated with CRISPR/Cas systems; some are fused to AAA ATPase domain, also known as TTE2665 family.	1.11029e-43
NC_011060.1\|WP_012509121.1\|2551026_2554749_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NC_011060.1\|WP_012509119.1\|2549169_2550255_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	2.6422e-166
NC_011060.1\|WP_083765335.1\|2539945_2540107_-\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	8.15012e-09

>NC_011060.1|WP_012509117.1|2541824_2544008_+|CRISPR-associated-endonuclease-Cas1
MGWLYNQMALPETLFQAWNKVVSNDGMAGYDKQSITDYSWRIEEHLADLGRQLLTNTYEPQPLLKLVMLKPTGKLRTLLIPTVMERVAQTAAAIVLTPLVESELGANTFAYRPGLSRMTAAREIERLRNLGYNWVVDADISSFFDTVDHPLLFQRFRELCDDEELLTLIARWLTAEIVDGQNPKVKNTIGLPQGCPISPMLANLYLDKFDERMEQEGFKLVRFADDFLILCKSKPKAEAALQLSESALAELKLQLNNEKTRITTFAEGFKYLGYLFIRSLVLPTKMHPDEWYDKLGKLKLRKAPKSLLHPEESDDEEYELQTGDSDAITVTKETLLQTEFGEKLLQSLEKQQIDVDKFLEKTAKEDALRQKEKHEALNKLYSPLLNTLYLQEQGSILRKDGERFSVEKEGKQLNDIIVRRVEQILVLGNITLTTPAMQYCMKSNIPITFVSQHGSYFGRLEATTADNSALERFQYLRSLDEPFALGIASAIVEAKIRNSRTMIQKRKAMAWESNGELKEKFDASLLLMTSLAEHTKSCDNMEALRGIEGKAAALYFELFGLLFKKELPFYTSAFRRVRRPPTDPVNSLLSFGYTLLHNNIFSLVRMKGMNPYLGFLHAEDKGNPALINDLVEEFRTIIDSMTLYTLNKGVLRNKDFYYRKDKAGCFLTDEARKKFLELFEQRMWAESLDPQSGKSLNIRRHIESQVVKISEVLAGTRAVYEPWRSEW
>NC_011060.1|WP_012509116.1|2541386_2541671_-|CRISPR-associated-endonuclease-Cas2
MQFILVTYDIENDRRRTKIHKLLEGYGLAVQYSVFECFVSDEEYAKMRMRLQKLLDPKHPIDSVRYYVLCRNCVERVDIDGNRDFAVESPFIIS
>NC_011060.1|WP_012509115.1|2540777_2541350_-|hypothetical-protein
MNEFFTQNNLLVVFWFTAGLVSIIELLEYLVTKNIPWLFRLMRGVWRGMARRFSGGISEGTRQLIINFSGHPVLPGQHKDIGKMMHWPSPEIINVSLGNVAEDHNFVSTIEKAVEKVALSPEEWQSTPIVVIAAGYSAVWSVVLAELHGRLGYFPDVVRLRPASTVSNEKFEVAEIMNLREVRHKSRDKR
>NC_011060.1|WP_012509114.1|2540374_2540770_-|hypothetical-protein
MDTYTAIGLVADIIGIIGAFSAFQALRQLLKQKKEKKRLNQIVSVVLQCTKDNRKIVPLMVVRRKDITRAELQGILGTIKMKPSITGRYKLDHLNTKKFWQDIESLQASDNDDNDQLLIPCTPEEIEQFDV
>NC_011060.1|WP_083765335.1|2539945_2540107_-|hypothetical-protein
MSSTQYLFLFTIGSPQTFIAQARKTHDLFAGSAVAEKICRNLSLSVSNNTRIA
>NC_011060.1|WP_012509113.1|2537648_2539934_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MVPTGHNIVELGIKLLKEKKIAISAFAEAFSLAGVTATELKLAPLKSVFGGDRYFEPKELSAFDINYPTLDSIDYFNNVTLDVIGNCLASLERFGSFVATDIDNTIPVYDLFKTAAAIQNCLNNELKDNPFLLVSADFSGIQDTVYTISSKGALKTLRARSFMLELLTEHIVYEILHACGSERYAIIYSGGGGFSLLLPNIAGNVKAIDGYREVLNKWALQEFSGKFFIAMDALVFNEEKLKDKGIFKKLRQEQSDNLDRQKSRKFLRQLDKLFKPEMPEQVNLQTECQITRRDDLPNKEMRDLGSGEKMPEHNPDMTKTWVSESCYRQYRLGDKLIGTKYVCRRKIAKDDRSGFVQLPTMKSTPTKLSFCYYVVSSKLIHNSDAIWCINSWTERESSRTLLYSNYVRKYGDLTAYTKKLGNESHTNVEERQAKDTDTATFEGLAASSCGADLIGALRMDVDNMGDLFRNIESFAALSTKSRMLNLFFKVYLNQICAGHLGSRLSPTDIVGKNYTEKNAAEENKGRNVSVIYAGGDDLFILGAWDETTELAFDIQRCFALFTGGMFDTTKKIISGGQGISGGLTLHQPKFPLYQMAIKSGEAESVAKHAKVQKNCFTPFLLALDHVDKGYEFYNNQTVRIIDWNDPTFFGLLENLVVLTEKHITGNQIDTIKLEAVSKGFIYKLFEVARVWVAEGTLYLPRLRYIFSRLEKQYIDNKDTHKQAGIQSLRSILFSSIKHEREKSIKRMTLTLNWFEQLQRNK
>NC_011060.1|WP_012509112.1|2537215_2537635_-|type-III-A-CRISPR-associated-protein-Csm2
MKTIQEIKEATSKFNSSLYEGLTIDDAIEYANVIARDLQKVKTHQLRRFFSAIKNIQNKVVDLKDNDLFPAGEYAELQMLRPQLANAVGRLHGSEKIAMQNLLDILRPVIKTVKKNNDFTRFVNFFESIIAYHKAYAKE
>NC_011060.1|WP_012509111.1|2536342_2537200_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MSKGLFGHIVLKGTIIAKTGMHIGASADTVEIGGIDTPVIKHPITFEPYIPGSSLKGKMRSLMEKIEVSKGVITYNRLVVKNNNIWQHVCSDSEHEMLISNHKTPGATNCDVCRLFGSTGENGNKNHPARILVRDAKLSNPNDLKLDALLIMEAKMENVLDRVHAAATPRTIERVPVGAKFNFEIVYRVEGEGCVTGIKNSDKTKVQTDVKNILLLLRAVEREGLGGNTSRGYGQVSFELTDFFYQKVKESGSTTQFPEENGVIFKGLEKVIEHVNDKEFKLQEL
>NC_011060.1|WP_012509110.1|2535281_2536346_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKYLVELQFDHAVHFGSSIAGFGIEDVDETCHSDTLFSGIINQLAAIEHLISDFSLKNFLQEFNSPTPPFRISSFGVVKGVDYFLPKPLIEPDFFACDSSVNKYKKDFKKLKWVHLEDFHKWQKKSLSSDDIKGYFVSYDNEPPPKSPPFSKIHTKVQHIQDRETDATQIYHTGQLFYGERVYPFFFVDFNSKSLSWEWFVEALRLIGISGLGGRRSTGYGKFCLRYEPILIGGDESAWPKKVCESNQHTKAITLWSNVLNHQSEGQYLFSLLAPKALSENDCFVYNLIIRKGWFFSNSSFCQMKRKTVYMFSEGSIFYRNVEGGLINISPDELPENHHDIYRYGLPFTIPFSI
>NC_011060.1|WP_012509109.1|2533977_2535276_-|hypothetical-protein
MTYEDKIERRTIRLTAVTPVHIKGKDIDYGQGFVRRDNYSAYAIDHMRLGKYLLSKGKFEVYLEEIDGLINRRKFKDFDFQKFLQTHNLYNINNPETHRELIDAGVFKAIVGSTNNKQFVRDGMLRAFIPGSTIKGFIRVACIYEHFKNKVFLKWEEFENEIRDYDKSLIDSFRFISVTDSRELDIQSIKDETVSIVSRNIREETVLPKTEEGEGRIIEFGKIKLQIGDTRFYDIDESLTNRFRLKTGVVISSYKLDSKGKKVIDLTIKDENISRGQSDLVKIVALNFKSDEDLECFNGETEFDIILNKNPANTPFKSIENLIHVLDSFSKNIWDLETKYLSQITENANNIEKIKKFYDGKRIANARIGFGTGLISKTPDGILEETVLTELVNALFQPMKPMPHTRPKSRKVISSSSEAVLPLGWIKLDIKP
>NC_011060.1|WP_012509118.1|2547360_2548551_-|Fic-family-protein
MITETPPRIEPCLPDSLNPAIVDLIAGVSASAEKLGNRLHPETAASLADLVRVMNCYYSNLIEGHNTKPRDIEEALQNQFNTNNERRNLQIEAVAHIRVQREIDAMHASGTLADAASSQFIRWLHREFYKDLPESMRYLERKEVKILIVPGVFRSEPIHDVSVGRHLPPESSTVDSFMAYFEKRYNFCSLGKGMRLAAMAAAHHRFNYIHPFPDGNGRVSRLMSHAMALQAGIGAHGLWSVSRGLARGFESRLDYMSMMDHADMPRQGDLDGRGNLSLKALNTFITWFLKISLDQVTFMESLFELDSLAKRLKNYCDRQEWKPEAFAILEMILLKGEIPRGEASRITGLKERTARALLSSLTENGILGSDTPKGALSLRFPLNAVELLFPNLFPSL
>NC_011060.1|WP_012509119.1|2549169_2550255_+|tRNA-2-thiouridine(34)-synthase-MnmA
MSVQKKVVVGISGGVDSAVSACLLVEQGYAVTGLNIRVLDAPDESPSLRPSPLVISDHPDFQIPVLSLNLSRKFRDEVIGYFHEDYLGGRTPNPCMVCNKKIKWFGLFEGLRLLDADFVATGHFAATSFSEGRYRLYKGADPEKDQSYFLWMLSQGDLARTLFPLGELTKPEVRALARSFGVRAAEKRESQEICFVPQDDYCGYLASAIPGLAERVADGDIVDESGRVIGKHRGYPFYTIGQRRGLGVSAKEPLYVTALDTEQNRIEVGKKSSLECSSLVASGINLIGMERPNIPIEAYGKIRYRDRETPCTLEPFGENSATVSFSTPKSAVAKGQAAVFYRDREVLGGGFITQVMQESHQ
>NC_011060.1|WP_012509120.1|2550270_2550948_+|phospholipase
MLQRHHLSLTYLDLPPARPEDAPLMIMLHGYGSNERDLIQLAPSLRPEFRYVSARAPQKMDFGMFGWFPIEFTPTGISVDYVAAQQALDQFITFIVEIIAEYRPAGNKVFLMGFSQGSVMSYLTAFHAPELLHGVIACSGQLPEKTVPHESLKPALRKLPFLVMHGIYDDVLPIAKGRAAHAWLQEHIEDLTYREYPIAHQIADSGIELICSWLEKRVPEASEKE
>NC_011060.1|WP_012509121.1|2551026_2554749_+|methionine-synthase
MKDTLLNSLEERILVLDGAMGTMIQRHKLKEADYRGTRFANHSHPLIGNNDILVLTRPDIIYALHCDFLEAGSDIIETNTFNANPISQADYSASDLVKELNVEAARLARRAADEYTARNPDKPRFVAGSIGPTNKTLSLSPDVNNPGFRAVTFQEVVDNYTLQLEGLMEGGVDLLLVETVFDTLNCKAALFSIEEFFNRTGVRIPVMVSGTVVDASGRTLSGQTTEAFWISIAHMPDLLSIGLNCALGSKQMRPFIEALAGIAESYVSVYPNAGLPNEFGEYDDSPEYMAGQIAGFATSGFVNIVGGCCGTTPQHIKAIAEAVEKLQPRRRPVKKHELQLSGLEPLFVNRTTGFINVGERTNVTGSKKFSRLIKESKYDEALSIARQQVESGAQVIDVNVDEGMLDSEVVMREFLNLIGSEPEISRVPVMIDSSKWSVIESGLRCVQGKSIVNSISLKEGEALFIERARKVLQYGAATVVMAFDEEGQADSYQRRIEICKRAYDILTQQVGFPPEDIIFDPNVLTVATGIDEHNNYAVDFIETVRWIKENLPHAKVSGGISNVSFSFRGNETVREAMHAAFLYHAIQAGLDMGIVNAGQLAIYEDIEPELLLRVEDVLLNRRADATERLVSFAETIQSGGEKIEAKAAEWRSLPVEERLRHALIKGIVEHIEEDTEEARQLYPSPLQVIEGPLMNGMNAIGDLFAEGKMFLPQVVKSARVMKRSVAVLLPYIAAEKALNKDTRAAAKVLLATVKGDVHDIGKNIVAVVLACNNYDVVDIGVMMPCDKILEAVEREKADLLGLSGLITPSLDEMVHVASEMERLGMTIPLLIGGATTSRMHTAVKIAPVYSGAVVQVLDASRSVPVVNSLLNPALSPDYIAGLKAEQAGLRESHASRAAGKKYLTLQEARNNRLALQGSICKPLQPGITLFEHVTAGELRPYIDWTPFFMTWELHGRYPQILDDPKYGSEAKKLFDDANSLLDRIEQEQLLGLKGVAGLFPANSSGDDIEVYSDESRTSLLAILHTLRQQQEKGEPNLALADFIAPVGSGLEDYIGAFAVTAGLGIEKGLREFSDQQDDYHRIMMQALADRLAEAFAEMLHERVRRELWGYECAEKRDGDKGCACHPAPQCQPHPIHELLAEKYQGIRPAPGYPACPDHTEKAELFTLLNAETNTGITLTETFAMKPAASVCGLYFAHPQAKYFMLGKIGRDQVEEYAERKGMSIKETEKWLAPALNYDPE
>NC_011060.1|WP_012509122.1|2554891_2555434_-|HD-domain-containing-protein
MNVVHESPLIDELLPAYRPVLGADYDAYRNHCMRLFNFCSALAAGESKAAEDKIAIAALFHDLGIWTEKSFDYLRPSQLLALSYLEKNFKASWCKEIEAMIGEHHKITRYQANPSWLVEPFRKADWIDVSGGLLRFRLPDDFVSDVLDAYPNAGFHAMLGRLTLARLKTHPLSPLPMMKW
>NC_011060.1|WP_150085863.1|2555679_2556246_-|hypothetical-protein
MRKAIAAAALALVFGAGTVSAATSQPEAPNCGKFGLGYQGVVAGSFLQGVSGRYWFDNNVAGELNLFYGRASVEMGSSELGKGDLLLGTAKILYAPVVKTNSRFYVGVEGGLGSIDGNIGSSMSLPDTSVWTAEPLFGAEFNFTEFPELGVNFEVGYKWHHVNSDLGSNDLDINLDGTTVAFGAHYYF
>NC_011060.1|WP_041526550.1|2556426_2557170_-|hypothetical-protein
MKLTLKRTLPLLILSALPLVSGCSKKSDAPEPGGSTQSLFNSTPKRYDLQSGIVTYEPMVIMGITSLSTLYFDDYGRREARETVTDSNIMGMKSHEKKVDITDGNYVISYEVEKIVNGKDETSKVATKTDMRQAQEMAMQMAKTFDVEQMKRDFDYREEGTEVVAGVTGTKYSVSFNKERKDQRVYGVLYKKISLSTQMGGISVKAQKIEENVAVPASKFEVPSGYTIQEVDLEKEMAMPMPGQSDN
>NC_011060.1|WP_012509125.1|2557290_2557842_-|discoidin-domain-containing-protein
MQHHAFGKIIKGIALLSFALIASPRLQASPIDPVGVTGEGEYTNDAQMLIDGYMPDQASTFDGPDCVFWSDPRVSFEIDLGSVYYVDRIVMQVDNNDDYLIEASLDGRYFSRMLFLNSQLGEIGWGMETVSTERGSRHYVPLRFTPAKARYLRVSGHGGDRLYAVSEVRIFGSRPFRPFRPLR
>NC_011060.1|WP_012509126.1|2558247_2558475_+|hypothetical-protein
MSNESINDFSVALNNILKTVGSLAQQQLELINLGFKAAGEVIEPLVKTSSDLVGNVLNTVGQIVQNITCALTPKK
>NC_011060.1|WP_012509127.1|2558552_2559026_-|SRPBCC-family-protein
MAFTVVINMQRGFDTPCTPEKVFALLADVPRSASHFPKVDQLLDLGGNAFRWEMEKIAIGGYTLQQTIYACHYTADPLTMHVAWTPVPGVGNAIVQGEWTIQPKEGGGTTVSISTKGDLTVDFPSFLEFMISPLVVMEFTGMIERYLANLQQSFIAL

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Crispr_ID: NC_011060_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011060_7

2546436-2546822

TypeIII

Consensus_repeat	Method
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	PILER-CR
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CRISPRCasFinder
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CRT

5 spacers

cas1,cas2,csx15,csx23,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7

The CRISPR arrays of NC_011060_7

>merge|NC_011060|7|2546436-2546822|PILER-CR,CRISPRCasFinder,CRT
CATCATATCTTATTGCACGCATAGCGGATTGAAACCAAAGGATTACTCCCCCAGCAAGAACCCAACGAAGCATCATATCTTATTGCACGCATAGCGGATTGAAACCCAACAACCTCGAATGCTTGCGATACAACCGGCATCATCATATCTTATTGCACGCATAGCGGATTGAAACTGATGAATCCCATGCCTTCGATAAACAGGAGCCCTACATCATATCTTATTGCACGCATAGCGGATTGAAACAACTCACCGACTTGTTCCCCATACAATTCAAGTAAGGCATCATATCTTATTGCACGCATAGCGGATTGAAACTGGGATGGGGCGGGATGACCCCGCCCCTGCGGGGCACCATTTCACATGCCACGCTTTGCGGTTTGCGAC

>NC_011060|7|4|2546436-2546681|PILER-CR
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CAAAGGATTACTCCCCCAGCAAGAACCCAACGAAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CCAACAACCTCGAATGCTTGCGATACAACCGGCAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TGATGAATCCCATGCCTTCGATAAACAGGAGCCCTA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC

>NC_011060|7|6|2546436-2546822|CRISPRCasFinder
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CAAAGGATTACTCCCCCAGCAAGAACCCAACGAAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CCAACAACCTCGAATGCTTGCGATACAACCGGCAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TGATGAATCCCATGCCTTCGATAAACAGGAGCCCTA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	AACTCACCGACTTGTTCCCCATACAATTCAAGTAAGG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TGGGATGGGGCGGGATGACCCCGCCCCTGCGGGG
CACCATTTCACATGCCACGCTTTGCGGTTTGCGAC

>NC_011060|7|3|2546436-2546753|CRT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CAAAGGATTACTCCCCCAGCAAGAACCCAACGAAG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	CCAACAACCTCGAATGCTTGCGATACAACCGGCAT
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	TGATGAATCCCATGCCTTCGATAAACAGGAGCCCTA
CATCATATCTTATTGCACGCATAGCGGATTGAAAC	AACTCACCGACTTGTTCCCCATACAATTCAAGTAAGG
CATCATATCTTATTGCACGCATAGCGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011060.1\|WP_012509119.1\|2549169_2550255_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NC_011060.1\|WP_012509113.1\|2537648_2539934_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NC_011060.1\|WP_012509118.1\|2547360_2548551_-\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NC_011060.1\|WP_012509111.1\|2536342_2537200_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NC_011060.1\|WP_012509109.1\|2533977_2535276_-\|hypothetical-protein	csm5gr7	COG1332_csm5gr7_CAS-III-A	gnl\|CDD\|224251
NC_011060.1\|WP_012509125.1\|2557290_2557842_-\|discoidin-domain-containing-protein	unknown	unknown	gnl\|CDD\|366285
NC_011060.1\|WP_012509112.1\|2537215_2537635_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NC_011060.1\|WP_012509126.1\|2558247_2558475_+\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012509117.1\|2541824_2544008_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NC_011060.1\|WP_012509110.1\|2535281_2536346_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	cd09663_csm4gr5_CAS-III-A	gnl\|CDD\|187794
NC_011060.1\|WP_150085863.1\|2555679_2556246_-\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012509127.1\|2558552_2559026_-\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176861
NC_011060.1\|WP_012509116.1\|2541386_2541671_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NC_011060.1\|WP_012509114.1\|2540374_2540770_-\|hypothetical-protein	csx23	mkCas0160_csx23_CAS-III-D	unknown
NC_011060.1\|WP_041526550.1\|2556426_2557170_-\|hypothetical-protein	unknown	unknown	unknown
NC_011060.1\|WP_012509120.1\|2550270_2550948_+\|phospholipase	unknown	unknown	gnl\|CDD\|223477
NC_011060.1\|WP_012509122.1\|2554891_2555434_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|366867
NC_011060.1\|WP_012509121.1\|2551026_2554749_+\|methionine-synthase	unknown	unknown	gnl\|CDD\|236539
NC_011060.1\|WP_012509115.1\|2540777_2541350_-\|hypothetical-protein	csx15	cd09766_csx15_CAS-I:CAS-III	gnl\|CDD\|187735
NC_011060.1\|WP_083765335.1\|2539945_2540107_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187810

Protein	Function_ID	Function_description	E-value
NC_011060.1\|WP_012509113.1\|2537648_2539934_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	1.03902e-95
NC_011060.1\|WP_012509118.1\|2547360_2548551_-\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.35884e-38
NC_011060.1\|WP_012509111.1\|2536342_2537200_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	1.70958e-70
NC_011060.1\|WP_012509109.1\|2533977_2535276_-\|hypothetical-protein	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	7.42458e-05
NC_011060.1\|WP_012509112.1\|2537215_2537635_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.19826e-25
NC_011060.1\|WP_012509117.1\|2541824_2544008_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.02491e-104
NC_011060.1\|WP_012509110.1\|2535281_2536346_-\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|187794	cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	2.65176e-29
NC_011060.1\|WP_012509122.1\|2554891_2555434_-\|HD-domain-containing-protein	gnl\|CDD\|366867	pfam01966, HD, HD domain. HD domains are metal dependent phosphohydrolases.	0.00466472
NC_011060.1\|WP_012509127.1\|2558552_2559026_-\|SRPBCC-family-protein	gnl\|CDD\|176861	cd07819, SRPBCC_2, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	5.28032e-51
NC_011060.1\|WP_012509116.1\|2541386_2541671_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.52342e-28
NC_011060.1\|WP_012509125.1\|2557290_2557842_-\|discoidin-domain-containing-protein	gnl\|CDD\|366285	pfam00754, F5_F8_type_C, F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.	0.000421342
NC_011060.1\|WP_012509120.1\|2550270_2550948_+\|phospholipase	gnl\|CDD\|223477	COG0400, COG0400, Predicted esterase [General function prediction only].	1.1382e-29
NC_011060.1\|WP_012509115.1\|2540777_2541350_-\|hypothetical-protein	gnl\|CDD\|187735	cd09766, Csx15_I-U, CRISPR/Cas system-associated protein Csx15. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small protein loosely associated with CRISPR/Cas systems; some are fused to AAA ATPase domain, also known as TTE2665 family.	1.11029e-43
NC_011060.1\|WP_012509121.1\|2551026_2554749_+\|methionine-synthase	gnl\|CDD\|236539	PRK09490, metH, B12-dependent methionine synthase; Provisional.	0
NC_011060.1\|WP_012509119.1\|2549169_2550255_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	2.6422e-166
NC_011060.1\|WP_083765335.1\|2539945_2540107_-\|hypothetical-protein	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	8.15012e-09

>NC_011060.1|WP_012509117.1|2541824_2544008_+|CRISPR-associated-endonuclease-Cas1
MGWLYNQMALPETLFQAWNKVVSNDGMAGYDKQSITDYSWRIEEHLADLGRQLLTNTYEPQPLLKLVMLKPTGKLRTLLIPTVMERVAQTAAAIVLTPLVESELGANTFAYRPGLSRMTAAREIERLRNLGYNWVVDADISSFFDTVDHPLLFQRFRELCDDEELLTLIARWLTAEIVDGQNPKVKNTIGLPQGCPISPMLANLYLDKFDERMEQEGFKLVRFADDFLILCKSKPKAEAALQLSESALAELKLQLNNEKTRITTFAEGFKYLGYLFIRSLVLPTKMHPDEWYDKLGKLKLRKAPKSLLHPEESDDEEYELQTGDSDAITVTKETLLQTEFGEKLLQSLEKQQIDVDKFLEKTAKEDALRQKEKHEALNKLYSPLLNTLYLQEQGSILRKDGERFSVEKEGKQLNDIIVRRVEQILVLGNITLTTPAMQYCMKSNIPITFVSQHGSYFGRLEATTADNSALERFQYLRSLDEPFALGIASAIVEAKIRNSRTMIQKRKAMAWESNGELKEKFDASLLLMTSLAEHTKSCDNMEALRGIEGKAAALYFELFGLLFKKELPFYTSAFRRVRRPPTDPVNSLLSFGYTLLHNNIFSLVRMKGMNPYLGFLHAEDKGNPALINDLVEEFRTIIDSMTLYTLNKGVLRNKDFYYRKDKAGCFLTDEARKKFLELFEQRMWAESLDPQSGKSLNIRRHIESQVVKISEVLAGTRAVYEPWRSEW
>NC_011060.1|WP_012509116.1|2541386_2541671_-|CRISPR-associated-endonuclease-Cas2
MQFILVTYDIENDRRRTKIHKLLEGYGLAVQYSVFECFVSDEEYAKMRMRLQKLLDPKHPIDSVRYYVLCRNCVERVDIDGNRDFAVESPFIIS
>NC_011060.1|WP_012509115.1|2540777_2541350_-|hypothetical-protein
MNEFFTQNNLLVVFWFTAGLVSIIELLEYLVTKNIPWLFRLMRGVWRGMARRFSGGISEGTRQLIINFSGHPVLPGQHKDIGKMMHWPSPEIINVSLGNVAEDHNFVSTIEKAVEKVALSPEEWQSTPIVVIAAGYSAVWSVVLAELHGRLGYFPDVVRLRPASTVSNEKFEVAEIMNLREVRHKSRDKR
>NC_011060.1|WP_012509114.1|2540374_2540770_-|hypothetical-protein
MDTYTAIGLVADIIGIIGAFSAFQALRQLLKQKKEKKRLNQIVSVVLQCTKDNRKIVPLMVVRRKDITRAELQGILGTIKMKPSITGRYKLDHLNTKKFWQDIESLQASDNDDNDQLLIPCTPEEIEQFDV
>NC_011060.1|WP_083765335.1|2539945_2540107_-|hypothetical-protein
MSSTQYLFLFTIGSPQTFIAQARKTHDLFAGSAVAEKICRNLSLSVSNNTRIA
>NC_011060.1|WP_012509113.1|2537648_2539934_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MVPTGHNIVELGIKLLKEKKIAISAFAEAFSLAGVTATELKLAPLKSVFGGDRYFEPKELSAFDINYPTLDSIDYFNNVTLDVIGNCLASLERFGSFVATDIDNTIPVYDLFKTAAAIQNCLNNELKDNPFLLVSADFSGIQDTVYTISSKGALKTLRARSFMLELLTEHIVYEILHACGSERYAIIYSGGGGFSLLLPNIAGNVKAIDGYREVLNKWALQEFSGKFFIAMDALVFNEEKLKDKGIFKKLRQEQSDNLDRQKSRKFLRQLDKLFKPEMPEQVNLQTECQITRRDDLPNKEMRDLGSGEKMPEHNPDMTKTWVSESCYRQYRLGDKLIGTKYVCRRKIAKDDRSGFVQLPTMKSTPTKLSFCYYVVSSKLIHNSDAIWCINSWTERESSRTLLYSNYVRKYGDLTAYTKKLGNESHTNVEERQAKDTDTATFEGLAASSCGADLIGALRMDVDNMGDLFRNIESFAALSTKSRMLNLFFKVYLNQICAGHLGSRLSPTDIVGKNYTEKNAAEENKGRNVSVIYAGGDDLFILGAWDETTELAFDIQRCFALFTGGMFDTTKKIISGGQGISGGLTLHQPKFPLYQMAIKSGEAESVAKHAKVQKNCFTPFLLALDHVDKGYEFYNNQTVRIIDWNDPTFFGLLENLVVLTEKHITGNQIDTIKLEAVSKGFIYKLFEVARVWVAEGTLYLPRLRYIFSRLEKQYIDNKDTHKQAGIQSLRSILFSSIKHEREKSIKRMTLTLNWFEQLQRNK
>NC_011060.1|WP_012509112.1|2537215_2537635_-|type-III-A-CRISPR-associated-protein-Csm2
MKTIQEIKEATSKFNSSLYEGLTIDDAIEYANVIARDLQKVKTHQLRRFFSAIKNIQNKVVDLKDNDLFPAGEYAELQMLRPQLANAVGRLHGSEKIAMQNLLDILRPVIKTVKKNNDFTRFVNFFESIIAYHKAYAKE
>NC_011060.1|WP_012509111.1|2536342_2537200_-|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MSKGLFGHIVLKGTIIAKTGMHIGASADTVEIGGIDTPVIKHPITFEPYIPGSSLKGKMRSLMEKIEVSKGVITYNRLVVKNNNIWQHVCSDSEHEMLISNHKTPGATNCDVCRLFGSTGENGNKNHPARILVRDAKLSNPNDLKLDALLIMEAKMENVLDRVHAAATPRTIERVPVGAKFNFEIVYRVEGEGCVTGIKNSDKTKVQTDVKNILLLLRAVEREGLGGNTSRGYGQVSFELTDFFYQKVKESGSTTQFPEENGVIFKGLEKVIEHVNDKEFKLQEL
>NC_011060.1|WP_012509110.1|2535281_2536346_-|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MKYLVELQFDHAVHFGSSIAGFGIEDVDETCHSDTLFSGIINQLAAIEHLISDFSLKNFLQEFNSPTPPFRISSFGVVKGVDYFLPKPLIEPDFFACDSSVNKYKKDFKKLKWVHLEDFHKWQKKSLSSDDIKGYFVSYDNEPPPKSPPFSKIHTKVQHIQDRETDATQIYHTGQLFYGERVYPFFFVDFNSKSLSWEWFVEALRLIGISGLGGRRSTGYGKFCLRYEPILIGGDESAWPKKVCESNQHTKAITLWSNVLNHQSEGQYLFSLLAPKALSENDCFVYNLIIRKGWFFSNSSFCQMKRKTVYMFSEGSIFYRNVEGGLINISPDELPENHHDIYRYGLPFTIPFSI
>NC_011060.1|WP_012509109.1|2533977_2535276_-|hypothetical-protein
MTYEDKIERRTIRLTAVTPVHIKGKDIDYGQGFVRRDNYSAYAIDHMRLGKYLLSKGKFEVYLEEIDGLINRRKFKDFDFQKFLQTHNLYNINNPETHRELIDAGVFKAIVGSTNNKQFVRDGMLRAFIPGSTIKGFIRVACIYEHFKNKVFLKWEEFENEIRDYDKSLIDSFRFISVTDSRELDIQSIKDETVSIVSRNIREETVLPKTEEGEGRIIEFGKIKLQIGDTRFYDIDESLTNRFRLKTGVVISSYKLDSKGKKVIDLTIKDENISRGQSDLVKIVALNFKSDEDLECFNGETEFDIILNKNPANTPFKSIENLIHVLDSFSKNIWDLETKYLSQITENANNIEKIKKFYDGKRIANARIGFGTGLISKTPDGILEETVLTELVNALFQPMKPMPHTRPKSRKVISSSSEAVLPLGWIKLDIKP
>NC_011060.1|WP_012509118.1|2547360_2548551_-|Fic-family-protein
MITETPPRIEPCLPDSLNPAIVDLIAGVSASAEKLGNRLHPETAASLADLVRVMNCYYSNLIEGHNTKPRDIEEALQNQFNTNNERRNLQIEAVAHIRVQREIDAMHASGTLADAASSQFIRWLHREFYKDLPESMRYLERKEVKILIVPGVFRSEPIHDVSVGRHLPPESSTVDSFMAYFEKRYNFCSLGKGMRLAAMAAAHHRFNYIHPFPDGNGRVSRLMSHAMALQAGIGAHGLWSVSRGLARGFESRLDYMSMMDHADMPRQGDLDGRGNLSLKALNTFITWFLKISLDQVTFMESLFELDSLAKRLKNYCDRQEWKPEAFAILEMILLKGEIPRGEASRITGLKERTARALLSSLTENGILGSDTPKGALSLRFPLNAVELLFPNLFPSL
>NC_011060.1|WP_012509119.1|2549169_2550255_+|tRNA-2-thiouridine(34)-synthase-MnmA
MSVQKKVVVGISGGVDSAVSACLLVEQGYAVTGLNIRVLDAPDESPSLRPSPLVISDHPDFQIPVLSLNLSRKFRDEVIGYFHEDYLGGRTPNPCMVCNKKIKWFGLFEGLRLLDADFVATGHFAATSFSEGRYRLYKGADPEKDQSYFLWMLSQGDLARTLFPLGELTKPEVRALARSFGVRAAEKRESQEICFVPQDDYCGYLASAIPGLAERVADGDIVDESGRVIGKHRGYPFYTIGQRRGLGVSAKEPLYVTALDTEQNRIEVGKKSSLECSSLVASGINLIGMERPNIPIEAYGKIRYRDRETPCTLEPFGENSATVSFSTPKSAVAKGQAAVFYRDREVLGGGFITQVMQESHQ
>NC_011060.1|WP_012509120.1|2550270_2550948_+|phospholipase
MLQRHHLSLTYLDLPPARPEDAPLMIMLHGYGSNERDLIQLAPSLRPEFRYVSARAPQKMDFGMFGWFPIEFTPTGISVDYVAAQQALDQFITFIVEIIAEYRPAGNKVFLMGFSQGSVMSYLTAFHAPELLHGVIACSGQLPEKTVPHESLKPALRKLPFLVMHGIYDDVLPIAKGRAAHAWLQEHIEDLTYREYPIAHQIADSGIELICSWLEKRVPEASEKE
>NC_011060.1|WP_012509121.1|2551026_2554749_+|methionine-synthase
MKDTLLNSLEERILVLDGAMGTMIQRHKLKEADYRGTRFANHSHPLIGNNDILVLTRPDIIYALHCDFLEAGSDIIETNTFNANPISQADYSASDLVKELNVEAARLARRAADEYTARNPDKPRFVAGSIGPTNKTLSLSPDVNNPGFRAVTFQEVVDNYTLQLEGLMEGGVDLLLVETVFDTLNCKAALFSIEEFFNRTGVRIPVMVSGTVVDASGRTLSGQTTEAFWISIAHMPDLLSIGLNCALGSKQMRPFIEALAGIAESYVSVYPNAGLPNEFGEYDDSPEYMAGQIAGFATSGFVNIVGGCCGTTPQHIKAIAEAVEKLQPRRRPVKKHELQLSGLEPLFVNRTTGFINVGERTNVTGSKKFSRLIKESKYDEALSIARQQVESGAQVIDVNVDEGMLDSEVVMREFLNLIGSEPEISRVPVMIDSSKWSVIESGLRCVQGKSIVNSISLKEGEALFIERARKVLQYGAATVVMAFDEEGQADSYQRRIEICKRAYDILTQQVGFPPEDIIFDPNVLTVATGIDEHNNYAVDFIETVRWIKENLPHAKVSGGISNVSFSFRGNETVREAMHAAFLYHAIQAGLDMGIVNAGQLAIYEDIEPELLLRVEDVLLNRRADATERLVSFAETIQSGGEKIEAKAAEWRSLPVEERLRHALIKGIVEHIEEDTEEARQLYPSPLQVIEGPLMNGMNAIGDLFAEGKMFLPQVVKSARVMKRSVAVLLPYIAAEKALNKDTRAAAKVLLATVKGDVHDIGKNIVAVVLACNNYDVVDIGVMMPCDKILEAVEREKADLLGLSGLITPSLDEMVHVASEMERLGMTIPLLIGGATTSRMHTAVKIAPVYSGAVVQVLDASRSVPVVNSLLNPALSPDYIAGLKAEQAGLRESHASRAAGKKYLTLQEARNNRLALQGSICKPLQPGITLFEHVTAGELRPYIDWTPFFMTWELHGRYPQILDDPKYGSEAKKLFDDANSLLDRIEQEQLLGLKGVAGLFPANSSGDDIEVYSDESRTSLLAILHTLRQQQEKGEPNLALADFIAPVGSGLEDYIGAFAVTAGLGIEKGLREFSDQQDDYHRIMMQALADRLAEAFAEMLHERVRRELWGYECAEKRDGDKGCACHPAPQCQPHPIHELLAEKYQGIRPAPGYPACPDHTEKAELFTLLNAETNTGITLTETFAMKPAASVCGLYFAHPQAKYFMLGKIGRDQVEEYAERKGMSIKETEKWLAPALNYDPE
>NC_011060.1|WP_012509122.1|2554891_2555434_-|HD-domain-containing-protein
MNVVHESPLIDELLPAYRPVLGADYDAYRNHCMRLFNFCSALAAGESKAAEDKIAIAALFHDLGIWTEKSFDYLRPSQLLALSYLEKNFKASWCKEIEAMIGEHHKITRYQANPSWLVEPFRKADWIDVSGGLLRFRLPDDFVSDVLDAYPNAGFHAMLGRLTLARLKTHPLSPLPMMKW
>NC_011060.1|WP_150085863.1|2555679_2556246_-|hypothetical-protein
MRKAIAAAALALVFGAGTVSAATSQPEAPNCGKFGLGYQGVVAGSFLQGVSGRYWFDNNVAGELNLFYGRASVEMGSSELGKGDLLLGTAKILYAPVVKTNSRFYVGVEGGLGSIDGNIGSSMSLPDTSVWTAEPLFGAEFNFTEFPELGVNFEVGYKWHHVNSDLGSNDLDINLDGTTVAFGAHYYF
>NC_011060.1|WP_041526550.1|2556426_2557170_-|hypothetical-protein
MKLTLKRTLPLLILSALPLVSGCSKKSDAPEPGGSTQSLFNSTPKRYDLQSGIVTYEPMVIMGITSLSTLYFDDYGRREARETVTDSNIMGMKSHEKKVDITDGNYVISYEVEKIVNGKDETSKVATKTDMRQAQEMAMQMAKTFDVEQMKRDFDYREEGTEVVAGVTGTKYSVSFNKERKDQRVYGVLYKKISLSTQMGGISVKAQKIEENVAVPASKFEVPSGYTIQEVDLEKEMAMPMPGQSDN
>NC_011060.1|WP_012509125.1|2557290_2557842_-|discoidin-domain-containing-protein
MQHHAFGKIIKGIALLSFALIASPRLQASPIDPVGVTGEGEYTNDAQMLIDGYMPDQASTFDGPDCVFWSDPRVSFEIDLGSVYYVDRIVMQVDNNDDYLIEASLDGRYFSRMLFLNSQLGEIGWGMETVSTERGSRHYVPLRFTPAKARYLRVSGHGGDRLYAVSEVRIFGSRPFRPFRPLR
>NC_011060.1|WP_012509126.1|2558247_2558475_+|hypothetical-protein
MSNESINDFSVALNNILKTVGSLAQQQLELINLGFKAAGEVIEPLVKTSSDLVGNVLNTVGQIVQNITCALTPKK
>NC_011060.1|WP_012509127.1|2558552_2559026_-|SRPBCC-family-protein
MAFTVVINMQRGFDTPCTPEKVFALLADVPRSASHFPKVDQLLDLGGNAFRWEMEKIAIGGYTLQQTIYACHYTADPLTMHVAWTPVPGVGNAIVQGEWTIQPKEGGGTTVSISTKGDLTVDFPSFLEFMISPLVVMEFTGMIERYLANLQQSFIAL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011060_1	1.1\|600906\|27\|NC_011060\|CRISPRCasFinder	600906-600932	27	NZ_CP040830	Paenibacillus polymyxa strain ZF129 plasmid pAP1, complete sequence	45655-45681	6	0.778
NC_011060_4	4.79\|1767259\|35\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1767259-1767293	35	NZ_AP022559	Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence	18333-18367	6	0.829
NC_011060_4	4.93\|1768184\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1768184-1768216	33	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	228061-228093	7	0.788
NC_011060_4	4.93\|1768184\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1768184-1768216	33	NZ_CP020948	Rhizobium sp. CIAT894 plasmid pRheCIAT894a, complete sequence	107077-107109	7	0.788
NC_011060_4	4.10\|1762688\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1762688-1762720	33	NZ_LN614828	Legionella fallonii LLAP-10 plasmid II, complete sequence	38531-38563	8	0.758
NC_011060_4	4.26\|1763744\|34\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1763744-1763777	34	MN871444	UNVERIFIED: Serratia phage KpGz_1, complete genome	100533-100566	8	0.765
NC_011060_4	4.86\|1767725\|34\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1767725-1767758	34	NZ_CP018742	Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence	11649-11682	8	0.765
NC_011060_4	4.88\|1767854\|32\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1767854-1767885	32	MH910038	Mycobacterium phage LeMond, complete genome	38920-38951	8	0.75
NC_011060_4	4.2\|1762153\|34\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1762153-1762186	34	NZ_CP042998	Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence	77743-77776	9	0.735
NC_011060_4	4.2\|1762153\|34\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1762153-1762186	34	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	226640-226673	9	0.735
NC_011060_4	4.10\|1762688\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1762688-1762720	33	MN694809	Marine virus AFVG_250M721, complete genome	19852-19884	9	0.727
NC_011060_4	4.10\|1762688\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1762688-1762720	33	MN694493	Marine virus AFVG_250M720, complete genome	22643-22675	9	0.727
NC_011060_4	4.10\|1762688\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1762688-1762720	33	MN694469	Marine virus AFVG_250M722, complete genome	22612-22644	9	0.727
NC_011060_4	4.24\|1763612\|34\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1763612-1763645	34	NC_047776	Escherichia phage ESCO5, complete genome	4983-5016	9	0.735
NC_011060_4	4.30\|1764010\|35\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1764010-1764044	35	NZ_CP032366	Bacillus wiedmannii strain SR52 plasmid unnamed1, complete sequence	103046-103080	9	0.743
NC_011060_4	4.30\|1764010\|35\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1764010-1764044	35	NC_017232	Borreliella afzelii PKo plasmid lp17, complete sequence	4383-4417	9	0.743
NC_011060_4	4.65\|1766324\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1766324-1766356	33	MN693873	Marine virus AFVG_250M921, complete genome	24997-25029	9	0.727
NC_011060_4	4.88\|1767854\|32\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1767854-1767885	32	MH910042	Mycobacterium phage Scarlett, complete genome	38814-38845	9	0.719
NC_011060_4	4.88\|1767854\|32\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1767854-1767885	32	MH910039	Mycobacterium phage Oscar, complete genome	38822-38853	9	0.719
NC_011060_4	4.88\|1767854\|32\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1767854-1767885	32	MK376955	Mycobacterium phage KiSi, complete genome	38936-38967	9	0.719
NC_011060_4	4.93\|1768184\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1768184-1768216	33	NZ_CP026542	Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR5, complete sequence	4973-5005	9	0.727
NC_011060_7	7.1\|2546471\|35\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	2546471-2546505	35	MT197175	Klebsiella phage VLC5, complete genome	18656-18690	9	0.743
NC_011060_4	4.41\|1764741\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1764741-1764773	33	MK962753	Shigella phage JK32, complete genome	34258-34290	10	0.697
NC_011060_4	4.42\|1764806\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1764806-1764838	33	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	396419-396451	10	0.697
NC_011060_4	4.42\|1764806\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1764806-1764838	33	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	747641-747673	10	0.697
NC_011060_4	4.42\|1764806\|33\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1764806-1764838	33	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	481409-481441	10	0.697
NC_011060_4	4.82\|1767458\|34\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1767458-1767491	34	NZ_CP032685	Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence	9816-9849	10	0.706
NC_011060_4	4.82\|1767458\|34\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1767458-1767491	34	NZ_CP032690	Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence	9816-9849	10	0.706
NC_011060_4	4.87\|1767791\|31\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1767791-1767821	31	NC_022995	Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence	76133-76163	10	0.677
NC_011060_4	4.88\|1767854\|32\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1767854-1767885	32	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	518052-518083	10	0.688
NC_011060_6	6.7\|2544728\|38\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	2544728-2544765	38	MN036206	Leviviridae sp. isolate H2_Bulk_Litter_11_614 hypothetical protein (H2BulkLitter11614_000001) gene, partial cds; RNA-dependent RNA polymerase (H2BulkLitter11614_000002) and hypothetical protein (H2BulkLitter11614_000003) genes, complete cds; and hypothetical protein (H2BulkLitter11614_000004) gene, partial cds	3034-3071	10	0.737
NC_011060_7	7.3\|2546611\|36\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	2546611-2546646	36	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	98969-99004	10	0.722
NC_011060_7	7.3\|2546611\|36\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	2546611-2546646	36	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	328297-328332	10	0.722
NC_011060_7	7.3\|2546611\|36\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	2546611-2546646	36	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	328297-328332	10	0.722
NC_011060_4	4.38\|1764542\|34\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	1764542-1764575	34	NZ_CP049160	Caballeronia sp. SBC1 plasmid pSBC1_4, complete sequence	103013-103046	11	0.676
NC_011060_7	7.3\|2546611\|36\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	2546611-2546646	36	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	308842-308877	11	0.694
NC_011060_7	7.3\|2546611\|36\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	2546611-2546646	36	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	315087-315122	11	0.694
NC_011060_7	7.3\|2546611\|36\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	2546611-2546646	36	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	323262-323297	11	0.694
NC_011060_7	7.3\|2546611\|36\|NC_011060\|PILER-CR,CRISPRCasFinder,CRT	2546611-2546646	36	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	308842-308877	11	0.694

1. spacer 1.1|600906|27|NC_011060|CRISPRCasFinder matches to NZ_CP040830 (Paenibacillus polymyxa strain ZF129 plasmid pAP1, complete sequence) position: , mismatch: 6, identity: 0.778

cttttcgtccccctttttttgaggaag	CRISPR spacer
tattacttccccctttttttgaggatc	Protospacer
. ** * ******************

2. spacer 4.79|1767259|35|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022559 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence) position: , mismatch: 6, identity: 0.829

gattgctggattaaagcgaatccgaatatcggagt	CRISPR spacer
aaaaattggattaaagcgaatccgaatattggagt	Protospacer
.*  ..***********************.*****

3. spacer 4.93|1768184|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 7, identity: 0.788

atggc-gatttcttcggcttgcttgccgtgcgct	CRISPR spacer
-cgccagatttcttcggcatgcttgcggtgctcg	Protospacer
 .* * ************ ******* **** *

4. spacer 4.93|1768184|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020948 (Rhizobium sp. CIAT894 plasmid pRheCIAT894a, complete sequence) position: , mismatch: 7, identity: 0.788

atggc-gatttcttcggcttgcttgccgtgcgct	CRISPR spacer
-cgccagatttcttcggcatgcttgcggtgctcg	Protospacer
 .* * ************ ******* **** *

5. spacer 4.10|1762688|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN614828 (Legionella fallonii LLAP-10 plasmid II, complete sequence) position: , mismatch: 8, identity: 0.758

-----caatcatactatctcctgttgtttgtgcggggt	CRISPR spacer
cgcagcaaatata-----tcctgttgtttgtccggggt	Protospacer
     *** .***     ************* ******

6. spacer 4.26|1763744|34|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MN871444 (UNVERIFIED: Serratia phage KpGz_1, complete genome) position: , mismatch: 8, identity: 0.765

tacagaaggggggacaagaaaagacctgtcccct	CRISPR spacer
aacgtaaggggggacaataaaagagctgtcggca	Protospacer
 **. ************ ****** *****  *

7. spacer 4.86|1767725|34|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018742 (Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence) position: , mismatch: 8, identity: 0.765

-tgttgattgggcaagggattatttttcgaccgcc	CRISPR spacer
acgtt-attgggaaagggattattttttgactatt	Protospacer
 .*** ****** **************.***....

8. spacer 4.88|1767854|32|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MH910038 (Mycobacterium phage LeMond, complete genome) position: , mismatch: 8, identity: 0.75

tgccgggaggtggccgcatgaacgagtcgcag	CRISPR spacer
cgccgcgaggtggccgcatgaccgacgacgag	Protospacer
.**** *************** ***     **

9. spacer 4.2|1762153|34|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042998 (Aquisphaera giovannonii strain OJF2 plasmid pOJF2_1, complete sequence) position: , mismatch: 9, identity: 0.735

aaaatcggcttcggcgcctgcaaggctctcatag	CRISPR spacer
ttcgcgggcttcgacgcctgcaaggcgctcatcg	Protospacer
   .. *******.************ ***** *

10. spacer 4.2|1762153|34|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 9, identity: 0.735

aaaatcggcttcggcgcctgcaaggctctcatag------	CRISPR spacer
gaaagcggcttcggcgcttgcaagg------tagaattcc	Protospacer
.*** ************.*******      ***

11. spacer 4.10|1762688|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MN694809 (Marine virus AFVG_250M721, complete genome) position: , mismatch: 9, identity: 0.727

-caatcatactatctcctgttgtttgtgcggggt	CRISPR spacer
atgagta-gctatctgctgttgtttgtgcgtggg	Protospacer
 ..* .* .****** ************** **

12. spacer 4.10|1762688|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MN694493 (Marine virus AFVG_250M720, complete genome) position: , mismatch: 9, identity: 0.727

-caatcatactatctcctgttgtttgtgcggggt	CRISPR spacer
atgagta-gctatctgctgttgtttgtgcgtggg	Protospacer
 ..* .* .****** ************** **

13. spacer 4.10|1762688|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MN694469 (Marine virus AFVG_250M722, complete genome) position: , mismatch: 9, identity: 0.727

-caatcatactatctcctgttgtttgtgcggggt	CRISPR spacer
atgagta-gctatctgctgttgtttgtgcgtggg	Protospacer
 ..* .* .****** ************** **

14. spacer 4.24|1763612|34|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NC_047776 (Escherichia phage ESCO5, complete genome) position: , mismatch: 9, identity: 0.735

caagtgtcgcaaaatctccgctcattttatccct	CRISPR spacer
ttactttacgaaactctccgctcattttacccct	Protospacer
. * * *   *** ***************.****

15. spacer 4.30|1764010|35|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032366 (Bacillus wiedmannii strain SR52 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.743

acattaaaggcgtaaagcatgtagatatttttaaa	CRISPR spacer
aatataaaggcgttaagcatggagatatttcttct	Protospacer
*   ********* ******* ********.*

16. spacer 4.30|1764010|35|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NC_017232 (Borreliella afzelii PKo plasmid lp17, complete sequence) position: , mismatch: 9, identity: 0.743

acattaaaggcgtaaagcatgtagatatttttaaa	CRISPR spacer
atcctatttgcgtaaagtaggtagatatttttaac	Protospacer
*. .**   ********.* **************

17. spacer 4.65|1766324|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MN693873 (Marine virus AFVG_250M921, complete genome) position: , mismatch: 9, identity: 0.727

caccgctgcatacgatgatgctctaaaagctaa	CRISPR spacer
aactgctgcatacgatgatgctatagcctctgg	Protospacer
 **.****************** **.   **..

18. spacer 4.88|1767854|32|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MH910042 (Mycobacterium phage Scarlett, complete genome) position: , mismatch: 9, identity: 0.719

tgccgggaggtggccgcatgaacgagtcgcag	CRISPR spacer
cgccgcgaggtggccgcatgatcgacgacgac	Protospacer
.**** *************** ***     *

19. spacer 4.88|1767854|32|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MH910039 (Mycobacterium phage Oscar, complete genome) position: , mismatch: 9, identity: 0.719

tgccgggaggtggccgcatgaacgagtcgcag	CRISPR spacer
cgccgcgaggtggccgcatgatcgacgacgac	Protospacer
.**** *************** ***     *

20. spacer 4.88|1767854|32|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MK376955 (Mycobacterium phage KiSi, complete genome) position: , mismatch: 9, identity: 0.719

tgccgggaggtggccgcatgaacgagtcgcag	CRISPR spacer
cgccgcgaggtggccgcatgatcgacgacgac	Protospacer
.**** *************** ***     *

21. spacer 4.93|1768184|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026542 (Desulfovibrio carbinolicus strain DSM 3852 plasmid pDCAR5, complete sequence) position: , mismatch: 9, identity: 0.727

atggcgatttcttcggcttgcttgccgtgcgct	CRISPR spacer
caggcgttttcttcggcttggttgccgactcgt	Protospacer
  **** ************* ******  .  *

22. spacer 7.1|2546471|35|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MT197175 (Klebsiella phage VLC5, complete genome) position: , mismatch: 9, identity: 0.743

caaaggattactcccccagcaagaacc----caacgaag	CRISPR spacer
tcaaggattactcccccatcaagcaccgctgtaac----	Protospacer
. **************** **** ***    .***

23. spacer 4.41|1764741|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 10, identity: 0.697

atatttggctttgccggtgtatggttttgcata	CRISPR spacer
cctattggcttttccggtgtgtggttttgggct	Protospacer
 .  ******** *******.******** ..

24. spacer 4.42|1764806|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.697

atcttttgccgacgaggagcagacgtcccctgc	CRISPR spacer
tgcttttgccgacgagggggagacgtcgatata	Protospacer
  ***************.* *******  .

25. spacer 4.42|1764806|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 10, identity: 0.697

atcttttgccgacgaggagcagacgtcccctgc	CRISPR spacer
tgcttttgccgacgagggggagacgtcgatata	Protospacer
  ***************.* *******  .

26. spacer 4.42|1764806|33|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

atcttttgccgacgaggagcagacgtcccctgc	CRISPR spacer
cggcgttgccgacgaagaccagacgtccctcgg	Protospacer
   . **********.** **********..*

27. spacer 4.82|1767458|34|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 10, identity: 0.706

aacaaacagcgcctcgatgaaatcaccggcgata	CRISPR spacer
cttcggcagcgcctcgatgaaatcatgggcgctg	Protospacer
  . ..*******************. **** *.

28. spacer 4.82|1767458|34|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 10, identity: 0.706

aacaaacagcgcctcgatgaaatcaccggcgata	CRISPR spacer
cttcggcagcgcctcgatgaaatcatgggcgctg	Protospacer
  . ..*******************. **** *.

29. spacer 4.87|1767791|31|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NC_022995 (Burkholderia sp. M701 plasmid pM7012 DNA, complete sequence) position: , mismatch: 10, identity: 0.677

ccctatcaacgacacacttcctcctatccat	CRISPR spacer
gagacgcaacgacatagttcctcctatccgg	Protospacer
      ********.* ************.

30. spacer 4.88|1767854|32|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

tgccgggaggtggccgcatgaacgagtcgcag	CRISPR spacer
aagcgggagctggccgcatgatcgagctgatc	Protospacer
 . ****** *********** ****..*

31. spacer 6.7|2544728|38|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to MN036206 (Leviviridae sp. isolate H2_Bulk_Litter_11_614 hypothetical protein (H2BulkLitter11614_000001) gene, partial cds; RNA-dependent RNA polymerase (H2BulkLitter11614_000002) and hypothetical protein (H2BulkLitter11614_000003) genes, complete cds; and hypothetical protein (H2BulkLitter11614_000004) gene, partial cds) position: , mismatch: 10, identity: 0.737

cttactcagactttcatctgctgaataagcagaataat	CRISPR spacer
aactgtcaatgtttcatctgctggataagcagactaat	Protospacer
  .  ***.  ************.********* ****

32. spacer 7.3|2546611|36|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 10, identity: 0.722

tgatgaatcccatgccttcgataaacaggagcccta	CRISPR spacer
gggcgaatcccatgccttcgatcaacatgaaagcgc	Protospacer
 *..****************** **** **.  *

33. spacer 7.3|2546611|36|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 10, identity: 0.722

tgatgaatcccatgccttcgataaacaggagcccta	CRISPR spacer
gggcgaatcccatgccttcgatcaacatgaaagcgc	Protospacer
 *..****************** **** **.  *

34. spacer 7.3|2546611|36|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 10, identity: 0.722

tgatgaatcccatgccttcgataaacaggagcccta	CRISPR spacer
gggcgaatcccatgccttcgatcaacatgaaagcgc	Protospacer
 *..****************** **** **.  *

35. spacer 4.38|1764542|34|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049160 (Caballeronia sp. SBC1 plasmid pSBC1_4, complete sequence) position: , mismatch: 11, identity: 0.676

aaataacattatctgttctgtatacagaccttta	CRISPR spacer
ccaggcggatatctgttctggataaagacctttt	Protospacer
  * .  . *********** *** ********

36. spacer 7.3|2546611|36|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 11, identity: 0.694

tgatgaatcccatgccttcgataaacaggagcccta	CRISPR spacer
gagcgaatcccatgccttcgatcaacatgaaagcgc	Protospacer
 ...****************** **** **.  *

37. spacer 7.3|2546611|36|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 11, identity: 0.694

tgatgaatcccatgccttcgataaacaggagcccta	CRISPR spacer
gagcgaatcccatgccttcgatcaacatgaaagcgc	Protospacer
 ...****************** **** **.  *

38. spacer 7.3|2546611|36|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 11, identity: 0.694

tgatgaatcccatgccttcgataaacaggagcccta	CRISPR spacer
gagcgaatcccatgccttcgatcaacatgaaagcgc	Protospacer
 ...****************** **** **.  *

39. spacer 7.3|2546611|36|NC_011060|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 11, identity: 0.694

tgatgaatcccatgccttcgataaacaggagcccta	CRISPR spacer
gagcgaatcccatgccttcgatcaacatgaaagcgc	Protospacer
 ...****************** **** **.  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

536462 : 581840

Synechococcus_phage(28.57%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041526392.1\|536462_537005_-\|transposase	transposase	NA	NA	NA	NA
WP_083765302.1\|537705_538038_+\|transposase	transposase	NA	NA	NA	NA
WP_041526393.1\|538034_538280_-	hypothetical protein	NA	NA	NA	NA
WP_190274013.1\|538370_538532_+	hypothetical protein	NA	NA	NA	NA
WP_012507361.1\|538889_540155_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_190274014.1\|540285_541503_+	hypothetical protein	NA	NA	NA	NA
WP_190274015.1\|541711_542602_+	hypothetical protein	NA	NA	NA	NA
WP_150085569.1\|542656_543958_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_012507365.1\|543954_545154_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_012507366.1\|545186_546209_+	polysaccharide biosynthesis protein	A0A2P1ELS8	Moumouvirus	3.2e-36	34.4
WP_012507367.1\|546225_547344_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_041526643.1\|547374_548505_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	3.2e-106	50.3
WP_012507369.1\|548631_549132_+	acetyltransferase	NA	NA	NA	NA
WP_012507370.1\|549368_549920_+	acetyltransferase	NA	NA	NA	NA
WP_012507371.1\|549912_550173_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012507372.1\|551810_552362_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012507373.1\|552358_553261_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_012507374.1\|553276_554035_+	glycosyltransferase	NA	NA	NA	NA
WP_012507375.1\|554031_555000_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012507376.1\|555032_555593_+	sugar transferase	NA	NA	NA	NA
WP_012507377.1\|555598_556579_+	GDP-L-fucose synthase	M1HVW2	Paramecium_bursaria_Chlorella_virus	2.9e-87	51.6
WP_012507378.1\|556585_557728_+	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	1.8e-133	65.5
WP_012507379.1\|558477_559071_+	acetyltransferase	NA	NA	NA	NA
WP_012507380.1\|559229_560444_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_012507381.1\|560452_561055_+	sugar transferase	NA	NA	NA	NA
WP_012507382.1\|561119_561362_+	acyl carrier protein	NA	NA	NA	NA
WP_012507383.1\|561358_562684_+	acyl--CoA ligase	NA	NA	NA	NA
WP_012507384.1\|562680_563406_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012507385.1\|563423_564026_+	galactoside O-acetyltransferase	NA	NA	NA	NA
WP_012507386.1\|564099_565284_+	DegT/DnrJ/EryC1/StrS aminotransferase family protein	A0A2K9L470	Tupanvirus	1.1e-93	43.5
WP_012507387.1\|565294_565987_-	EpsI family protein	NA	NA	NA	NA
WP_012507388.1\|565967_566843_-	exosortase/archaeosortase family protein	NA	NA	NA	NA
WP_012507389.1\|566842_567772_-	hypothetical protein	NA	NA	NA	NA
WP_012507390.1\|569730_570120_-	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_041526396.1\|570116_570788_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_012507392.1\|570952_571891_-	hypothetical protein	NA	NA	NA	NA
WP_150085765.1\|571881_572448_-	hypothetical protein	NA	NA	NA	NA
WP_190274016.1\|572757_572910_+	hypothetical protein	NA	NA	NA	NA
WP_012507394.1\|573961_575104_+	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	5.4e-133	64.7
WP_150085767.1\|575185_575425_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_012507396.1\|575421_575622_+	DUF2283 domain-containing protein	NA	NA	NA	NA
WP_190274017.1\|575788_576061_+	hypothetical protein	NA	NA	NA	NA
WP_012507397.1\|576181_576508_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_190274018.1\|576941_577115_+	hypothetical protein	NA	NA	NA	NA
WP_041526649.1\|577368_578376_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_012507399.1\|578710_579703_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_012507400.1\|579781_580672_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	A0A1B2LRR6	Wolbachia_phage	2.5e-24	33.8
WP_012507401.1\|580880_581840_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1621497 : 1633863

Bacillus_thuringiensis_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012508276.1\|1621497_1622100_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.9e-41	43.1
WP_012508277.1\|1622190_1623048_-	DUF4292 domain-containing protein	NA	NA	NA	NA
WP_012508278.1\|1623278_1624460_+	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_012508279.1\|1624576_1624750_-	hypothetical protein	NA	NA	NA	NA
WP_012508280.1\|1624845_1627518_-	cation-translocating P-type ATPase	M1I547	Acanthocystis_turfacea_Chlorella_virus	2.2e-76	30.1
WP_012508281.1\|1628083_1629019_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.4e-75	47.8
WP_012508282.1\|1629105_1629438_-	thioredoxin	A0A0A7CHH9	Dinoroseobacter_phage	2.0e-08	29.0
WP_041526480.1\|1629857_1630187_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	1.9e-19	43.8
WP_012508284.1\|1630293_1633863_-	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	3.2e-155	32.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011060

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection