CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NC_011092	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 plasmid pCVM19633_110, complete sequence	0 crisprs	NA	0	1
NC_011093	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 plasmid pCVM19633_4, complete sequence	0 crisprs	NA	0	0
NC_011094	Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633, complete sequence	2 crisprs	csa3,DinG,cas3,DEDDh,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,WYL,PD-DExK	22	7

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8635 : 68874

Escherichia_phage(38.46%)

integrase,transposase

attL 37869:37928|attR 66520:67341

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000331736.1\|8635_9361_+	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.4e-40	42.2
WP_000750474.1\|9460_9871_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_000208727.1\|9973_10933_+	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_000633445.1\|11078_12167_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	9.7e-124	61.7
WP_001067852.1\|12229_12934_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	4.0e-139	99.6
WP_000557466.1\|13197_14271_-	hypothetical protein	NA	NA	NA	NA
WP_000550473.1\|14314_14464_-	hypothetical protein	NA	NA	NA	NA
WP_000534857.1\|14805_15045_+	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	2.0e-18	54.4
WP_000323025.1\|15044_15332_+	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_001531258.1\|15635_16418_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	6.1e-136	96.5
WP_000627495.1\|16414_17437_-\|transposase	IS21-like element ISSen3 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-174	85.3
WP_001162839.1\|18236_20444_+	AAA family ATPase	NA	NA	NA	NA
WP_000449742.1\|20446_23029_+	hypothetical protein	NA	NA	NA	NA
WP_085950818.1\|23449_24570_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
WP_000600827.1\|24998_25976_-\|integrase	tyrosine-type recombinase/integrase	A0A0K0N6I5	Gordonia_phage	1.1e-06	34.9
WP_001214977.1\|28787_29195_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|29332_30217_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|30248_31448_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000164043.1\|31553_32204_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000844627.1\|32235_32478_-\|transposase	transposase	NA	NA	NA	NA
WP_001138073.1\|33548_36521_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_001162012.1\|36523_37081_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
37869:37928	attL	NA	NA	NA	NA
WP_001067855.1\|37922_38627_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001300294.1\|40016_40685_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000993386.1\|40720_40957_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277456.1\|40953_41316_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000105636.1\|41333_43028_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_000027057.1\|43191_44052_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001067858.1\|44445_45150_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000084744.1\|45484_45877_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_063102497.1\|46196_46583_-	bleomycin binding protein	NA	NA	NA	NA
WP_001138062.1\|46714_49681_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.4
WP_000147567.1\|49683_50244_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_072266016.1\|50369_50519_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001067858.1\|50554_51259_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_011264039.1\|51331_51571_+	macrolide transporter	A0A2K5B2B5	Erysipelothrix_phage	9.5e-08	46.2
WP_000612791.1\|51716_52580_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
WP_001354008.1\|52617_52863_+	GrpB family protein	NA	NA	NA	NA
WP_000034420.1\|53331_54123_+	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
WP_109023896.1\|54125_54401_-	hypothetical protein	NA	NA	NA	NA
WP_000800531.1\|55302_55635_-	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA
WP_001206316.1\|55804_56596_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000095725.1\|56688_57948_-	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
WP_001261740.1\|58209_59001_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000050382.1\|59058_59667_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_001456218.1\|59762_60605_-	alpha/beta fold putative hydrolase EstX	NA	NA	NA	NA
WP_000845048.1\|60771_61785_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001067858.1\|62276_62981_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000168937.1\|65317_65788_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|66573_67278_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067858.1\|68169_68874_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
66520:67341	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_011094

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CRISPR-Cas detection and classification

Crispr_ID: NC_011094_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011094_1

2981949-2982709

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

12 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_011094_1

>merge|NC_011094|1|2981949-2982709|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGACGCGGGGAACACTTTTTAGAGGTGTACACACTGTCGGCCTTTTGCGGTTTATCCCCGCTGGCGCGGGGAACACCACCTTAGCGACGAAATTAAAACCGAGCTCACCGGTTTATCCCCGCTGGCGCGGGGAACACGCTTTGCCCCATGCGTCCAGATCTTCAACGGGCGGTTTATCCCCGCTGGCGCGGGGAACACAGAAAATTATCACTGACGAGTGACAATAACTCCGGTTTATCCCCGCTGGCGCGGGGAACACGGAGGTGATCCGGGATTTAAACAAAATGATTAAGGTTTATCCCCGCTGGCGCGGGGAACACGGTTTACAGACCTCAATAAAAAGACGGCAGGCCGGTTTATCCCCGCTGGCGCGGGGAACACGTCAGCGCCGGCGATTGGGCCGCCGATTTTGTCGGTTTATCCCCGCTGGCGCGGGGAACACAATGCAATTTCCTGACTCCCCTAACCTCAAGGCGGTTTATCCCCGCTGGCGCGGGGAACACAAGTACCGGCAAGTGTGGTAGCGAAGGTTATGCGGTTTATCCCCGCTGGCGCGGGGAACACGCGCTTGATCTCCCGTTATCTAAGGGCCAATCCGGTTTATCCCCGCTGGCGCGGGGAACACGCATCGGTGGCGCTGGCCAGTTCAAAAATACGCGGTTTATCCCCGCTGGCGCGGGGAACACCTCAAACGAACGCAGTATTTGATCGGATGTTTCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011094|1|1|2981949-2982709|CRISPRCasFinder
GTGTTTATCCCCGCTGACGCGGGGAACAC	TTTTTAGAGGTGTACACACTGTCGGCCTTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCTTAGCGACGAAATTAAAACCGAGCTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTTTGCCCCATGCGTCCAGATCTTCAACGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGAAAATTATCACTGACGAGTGACAATAACTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAGGTGATCCGGGATTTAAACAAAATGATTA
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTTTACAGACCTCAATAAAAAGACGGCAGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCAGCGCCGGCGATTGGGCCGCCGATTTTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATGCAATTTCCTGACTCCCCTAACCTCAAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAGTACCGGCAAGTGTGGTAGCGAAGGTTATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCTTGATCTCCCGTTATCTAAGGGCCAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCATCGGTGGCGCTGGCCAGTTCAAAAATACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCAAACGAACGCAGTATTTGATCGGATGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011094|1|1|2981949-2982709|CRT
GTGTTTATCCCCGCTGACGCGGGGAACAC	TTTTTAGAGGTGTACACACTGTCGGCCTTTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CACCTTAGCGACGAAATTAAAACCGAGCTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTTTGCCCCATGCGTCCAGATCTTCAACGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGAAAATTATCACTGACGAGTGACAATAACTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGAGGTGATCCGGGATTTAAACAAAATGATTA
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTTTACAGACCTCAATAAAAAGACGGCAGGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCAGCGCCGGCGATTGGGCCGCCGATTTTGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATGCAATTTCCTGACTCCCCTAACCTCAAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAGTACCGGCAAGTGTGGTAGCGAAGGTTATG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCTTGATCTCCCGTTATCTAAGGGCCAATC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCATCGGTGGCGCTGGCCAGTTCAAAAATACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTCAAACGAACGCAGTATTTGATCGGATGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011094|1|1|2981951-2982709|PILER-CR
GTTTATCCCCGCTGACGCGGGGAACACT	TTTTAGAGGTGTACACACTGTCGGCCTTTTGCG
GTTTATCCCCGCTGGCGCGGGGAACACC	ACCTTAGCGACGAAATTAAAACCGAGCTCACCG
GTTTATCCCCGCTGGCGCGGGGAACACG	CTTTGCCCCATGCGTCCAGATCTTCAACGGGCG
GTTTATCCCCGCTGGCGCGGGGAACACA	GAAAATTATCACTGACGAGTGACAATAACTCCG
GTTTATCCCCGCTGGCGCGGGGAACACG	GAGGTGATCCGGGATTTAAACAAAATGATTAAG
GTTTATCCCCGCTGGCGCGGGGAACACG	GTTTACAGACCTCAATAAAAAGACGGCAGGCCG
GTTTATCCCCGCTGGCGCGGGGAACACG	TCAGCGCCGGCGATTGGGCCGCCGATTTTGTCG
GTTTATCCCCGCTGGCGCGGGGAACACA	ATGCAATTTCCTGACTCCCCTAACCTCAAGGCG
GTTTATCCCCGCTGGCGCGGGGAACACA	AGTACCGGCAAGTGTGGTAGCGAAGGTTATGCG
GTTTATCCCCGCTGGCGCGGGGAACACG	CGCTTGATCTCCCGTTATCTAAGGGCCAATCCG
GTTTATCCCCGCTGGCGCGGGGAACACG	CATCGGTGGCGCTGGCCAGTTCAAAAATACGCG
GTTTATCCCCGCTGGCGCGGGGAACACC	TCAAACGAACGCAGTATTTGATCGGATGTTTCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011094.1\|WP_001049217.1\|2987145_2988681_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_011094.1\|WP_000118671.1\|2983089_2984007_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_011094.1\|WP_000062281.1\|2982793_2983087_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_011094.1\|WP_000436059.1\|2979728_2980637_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_011094.1\|WP_001221538.1\|2973815_2974577_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_011094.1\|WP_000080397.1\|2993366_2994101_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_011094.1\|WP_000935101.1\|2986526_2987129_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NC_011094.1\|WP_023196115.1\|2977313_2977637_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_011094.1\|WP_000134246.1\|2974557_2975607_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_011094.1\|WP_001092269.1\|2978279_2979719_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_011094.1\|WP_000192882.1\|2989242_2991942_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_011094.1\|WP_001145539.1\|2992325_2993279_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_011094.1\|WP_000666424.1\|2984710_2985436_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_011094.1\|WP_000741649.1\|2976082_2976793_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NC_011094.1\|WP_001530225.1\|2985445_2986504_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_011094.1\|WP_000517480.1\|2976811_2977123_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_011094.1\|WP_000490481.1\|2980887_2981934_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_011094.1\|WP_001173663.1\|2977687_2978293_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_011094.1\|WP_001219244.1\|2975603_2976083_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_011094.1\|WP_000281417.1\|2984003_2984711_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795

Protein	Function_ID	Function_description	E-value
NC_011094.1\|WP_001049217.1\|2987145_2988681_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_011094.1\|WP_000118671.1\|2983089_2984007_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.48412e-156
NC_011094.1\|WP_000062281.1\|2982793_2983087_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.59475e-65
NC_011094.1\|WP_000436059.1\|2979728_2980637_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_011094.1\|WP_001221538.1\|2973815_2974577_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NC_011094.1\|WP_000080397.1\|2993366_2994101_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.66828e-138
NC_011094.1\|WP_000935101.1\|2986526_2987129_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.9872e-37
NC_011094.1\|WP_023196115.1\|2977313_2977637_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	6.67715e-48
NC_011094.1\|WP_000134246.1\|2974557_2975607_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_011094.1\|WP_001092269.1\|2978279_2979719_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_011094.1\|WP_000192882.1\|2989242_2991942_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.32798e-141
NC_011094.1\|WP_001145539.1\|2992325_2993279_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_011094.1\|WP_000666424.1\|2984710_2985436_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.38262e-47
NC_011094.1\|WP_000741649.1\|2976082_2976793_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.24126e-119
NC_011094.1\|WP_001530225.1\|2985445_2986504_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	4.62968e-122
NC_011094.1\|WP_000517480.1\|2976811_2977123_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NC_011094.1\|WP_000490481.1\|2980887_2981934_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_011094.1\|WP_001173663.1\|2977687_2978293_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NC_011094.1\|WP_001219244.1\|2975603_2976083_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NC_011094.1\|WP_000281417.1\|2984003_2984711_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.13186e-88

>NC_011094.1|WP_000490481.1|2980887_2981934_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_011094.1|WP_000436059.1|2979728_2980637_-|sulfate-adenylyltransferase-subunit-CysD
MEQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_011094.1|WP_001092269.1|2978279_2979719_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_011094.1|WP_001173663.1|2977687_2978293_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_011094.1|WP_023196115.1|2977313_2977637_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLVVGALFGALFIWLLG
>NC_011094.1|WP_000517480.1|2976811_2977123_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NC_011094.1|WP_000741649.1|2976082_2976793_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_011094.1|WP_001219244.1|2975603_2976083_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_011094.1|WP_000134246.1|2974557_2975607_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NC_011094.1|WP_001221538.1|2973815_2974577_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NC_011094.1|WP_000062281.1|2982793_2983087_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGENRRIPVDLDGLRLVSFLPVENQ
>NC_011094.1|WP_000118671.1|2983089_2984007_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWLGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAEGEIQPPLPPEDSQPIAIPLPVALGDSGHRST
>NC_011094.1|WP_000281417.1|2984003_2984711_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLSQHSLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQYRFVRKDQQKPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKRR
>NC_011094.1|WP_000666424.1|2984710_2985436_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NC_011094.1|WP_001530225.1|2985445_2986504_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDDSGRPKTAYMGGVERLRVSSQSLKRAWRVSETFEGAMDGFMGKRTRRIGVDYVYRPMIAAGVTGKIAKSAAEKIAAQFGKLKSDKNAPEEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLATAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NC_011094.1|WP_000935101.1|2986526_2987129_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAALCRILHPDAQKALLDWFATLSERYERKDGKRVNGRVWRAELKRMAPPYGVMICEGYDALRQTLLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLNGSTPCVSVLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRTPFERNRIRWANEYLSTSRGK
>NC_011094.1|WP_001049217.1|2987145_2988681_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLITEKWLPVIFSSGEKTRISLRDLLDNRIQDLAYPRPDFQGAAWQMLIGILQCTIAPEDKEEWADIWHDGIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNTLKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNSHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNNMSLWCFAFDMDNAKARCWYQHRIPLISVSHEEQFLAALNTVLVLASEALSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRALQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NC_011094.1|WP_000192882.1|2989242_2991942_+|CRISPR-associated-helicase/endonuclease-Cas3
MTQMEYLNYLRYWGKTNKSNKDITPPYHLLAYHCLDVAACGYYIIKNNIFDSRSILEKCGIIGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPVSGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSYYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQQKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>NC_011094.1|WP_001145539.1|2992325_2993279_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTSNAQIKVAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>NC_011094.1|WP_000080397.1|2993366_2994101_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NC_011094_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011094_2

2999469-3000534

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAA	CRT
CGGTTTATCCCCGCTGGCGCGGGGAA	PILER-CR

17 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NC_011094_2

>merge|NC_011094|2|2999469-3000534|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCCCGCTGACGCGGGGAACACTCGTAGTCTTCCGGGTAGGCGTTTTCATCCGGCGGTTTATCCCCGCTAGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCCGCTGACGCGGGGAACACGCGAGCGTTTTGGGTGGCACAAAATCCCCGAGCGGTTTATCCCCGCTGACGCGGGGAACACGTAACTTAATAAGGTCCTGGACATTAATTTTGCGGTTTATCCCCGCTGACGCGGGGAACACAGTGCCGATGCGCGGTATCTGGGGAATTTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACATAAAGGTCGGGGACGATATTGTTACCTGGTGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTGGAATCGCGCAAAACTTTGTTTGTTTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACGGGTACTGACAATAGTACAAATAAAAAAAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCGACCAAACCAAAGTGTGAGAATCCTGTATACGGTTTATCCCCGCTGGCGCGGGGAACACGGTTTTGGCTATCTGAGCGGCGTCCGCCGCCGCGGTTTATCCCCGCTGGCGCGGGGAATACTGACGCTGGACGAGGCGAGTTCTTTCCCCGGACGGTTTATCCCCGCTGGCGCGGGGAATACATCATAACGGTTTTTTACATATAAGAAGTTGCCGGTTTATCCCCGCTGGCGCGGGGAATACTCCACGATGCCGGCAAGCTCCCGGTCGAGCCGCGGTTTATCCCCGCTGGCGCGGGGAATACTGCCAGGCGTGGGGTTATGACAATGCTGAGGCCGGTTTATCCCCGCTGGCGCGGGGAATACAACAATCAGGTTAGTTCGAATAGCCAGCAACGCGGTTTATCCCCGCTGGCGCGGGGAATACGGGTTCGTTAGCGGGATCTGGTTGCTGCGCCACGGTTTATCCCCGCTGGCGCGGGGAATACTTCTTATAAAATCAATAGGTTAGCTACATAGCCGGTTTATCCCCGCTGGCGCGGGGAATAC

>NC_011094|2|2|2999469-3000534|CRISPRCasFinder
ACGGCTATCCCCGCTGACGCGGGGAACAC	TCGTAGTCTTCCGGGTAGGCGTTTTCATCCGG
CGGTTTATCCCCGCTAGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCCGCTGACGCGGGGAACAC	GCGAGCGTTTTGGGTGGCACAAAATCCCCGAG
CGGTTTATCCCCGCTGACGCGGGGAACAC	GTAACTTAATAAGGTCCTGGACATTAATTTTG
CGGTTTATCCCCGCTGACGCGGGGAACAC	AGTGCCGATGCGCGGTATCTGGGGAATTTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAAAGGTCGGGGACGATATTGTTACCTGGTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTGGAATCGCGCAAAACTTTGTTTGTTTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTACTGACAATAGTACAAATAAAAAAAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCGACCAAACCAAAGTGTGAGAATCCTGTATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTTTTGGCTATCTGAGCGGCGTCCGCCGCCG
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TGACGCTGGACGAGGCGAGTTCTTTCCCCGGA
CGGTTTATCCCCGCTGGCGCGGGGAATAC	ATCATAACGGTTTTTTACATATAAGAAGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TCCACGATGCCGGCAAGCTCCCGGTCGAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TGCCAGGCGTGGGGTTATGACAATGCTGAGGC
CGGTTTATCCCCGCTGGCGCGGGGAATAC	AACAATCAGGTTAGTTCGAATAGCCAGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAATAC	GGGTTCGTTAGCGGGATCTGGTTGCTGCGCCA
CGGTTTATCCCCGCTGGCGCGGGGAATAC	TTCTTATAAAATCAATAGGTTAGCTACATAGC
CGGTTTATCCCCGCTGGCGCGGGGAATAC

>NC_011094|2|2|2999469-3000531|CRT
ACGGCTATCCCCGCTGACGCGGGGAA	CACTCGTAGTCTTCCGGGTAGGCGTTTTCATCCGG
CGGTTTATCCCCGCTAGCGCGGGGAA	CACTCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCCGCTGACGCGGGGAA	CACGCGAGCGTTTTGGGTGGCACAAAATCCCCGAG
CGGTTTATCCCCGCTGACGCGGGGAA	CACGTAACTTAATAAGGTCCTGGACATTAATTTTG
CGGTTTATCCCCGCTGACGCGGGGAA	CACAGTGCCGATGCGCGGTATCTGGGGAATTTCGC
CGGTTTATCCCCGCTGGCGCGGGGAA	CACATAAAGGTCGGGGACGATATTGTTACCTGGTG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGTGGAATCGCGCAAAACTTTGTTTGTTTCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGGTACTGACAATAGTACAAATAAAAAAAACG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACTCGACCAAACCAAAGTGTGAGAATCCTGTATA
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGTTTTGGCTATCTGAGCGGCGTCCGCCGCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTGACGCTGGACGAGGCGAGTTCTTTCCCCGGA
CGGTTTATCCCCGCTGGCGCGGGGAA	TACATCATAACGGTTTTTTACATATAAGAAGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTCCACGATGCCGGCAAGCTCCCGGTCGAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTGCCAGGCGTGGGGTTATGACAATGCTGAGGC
CGGTTTATCCCCGCTGGCGCGGGGAA	TACAACAATCAGGTTAGTTCGAATAGCCAGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAA	TACGGGTTCGTTAGCGGGATCTGGTTGCTGCGCCA
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTTCTTATAAAATCAATAGGTTAGCTACATAGC
CGGTTTATCCCCGCTGGCGCGGGGAA

>NC_011094|2|2|2999530-3000531|PILER-CR
CGGTTTATCCCCGCTAGCGCGGGGAA	CACTCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCCGCTGACGCGGGGAA	CACGCGAGCGTTTTGGGTGGCACAAAATCCCCGAG
CGGTTTATCCCCGCTGACGCGGGGAA	CACGTAACTTAATAAGGTCCTGGACATTAATTTTG
CGGTTTATCCCCGCTGACGCGGGGAA	CACAGTGCCGATGCGCGGTATCTGGGGAATTTCGC
CGGTTTATCCCCGCTGGCGCGGGGAA	CACATAAAGGTCGGGGACGATATTGTTACCTGGTG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGTGGAATCGCGCAAAACTTTGTTTGTTTCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGGTACTGACAATAGTACAAATAAAAAAAACG
CGGTTTATCCCCGCTGGCGCGGGGAA	CACTCGACCAAACCAAAGTGTGAGAATCCTGTATA
CGGTTTATCCCCGCTGGCGCGGGGAA	CACGGTTTTGGCTATCTGAGCGGCGTCCGCCGCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTGACGCTGGACGAGGCGAGTTCTTTCCCCGGA
CGGTTTATCCCCGCTGGCGCGGGGAA	TACATCATAACGGTTTTTTACATATAAGAAGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTCCACGATGCCGGCAAGCTCCCGGTCGAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTGCCAGGCGTGGGGTTATGACAATGCTGAGGC
CGGTTTATCCCCGCTGGCGCGGGGAA	TACAACAATCAGGTTAGTTCGAATAGCCAGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAA	TACGGGTTCGTTAGCGGGATCTGGTTGCTGCGCCA
CGGTTTATCCCCGCTGGCGCGGGGAA	TACTTCTTATAAAATCAATAGGTTAGCTACATAGC
CGGTTTATCCCCGCTGGCGCGGGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011094.1\|WP_001049217.1\|2987145_2988681_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_011094.1\|WP_001145539.1\|2992325_2993279_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_011094.1\|WP_000046865.1\|3009440_3010736_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NC_011094.1\|WP_000935101.1\|2986526_2987129_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NC_011094.1\|WP_000108313.1\|2998123_2998486_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_011094.1\|WP_001530225.1\|2985445_2986504_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_011094.1\|WP_000192882.1\|2989242_2991942_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NC_011094.1\|WP_000210922.1\|2995888_2997688_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_011094.1\|WP_000210451.1\|3004883_3005684_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_011094.1\|WP_001207994.1\|2998573_2999371_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NC_011094.1\|WP_000036734.1\|3001637_3002936_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_011094.1\|WP_000706486.1\|3013593_3014736_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NC_011094.1\|WP_000210864.1\|3003018_3004656_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_011094.1\|WP_000080397.1\|2993366_2994101_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_011094.1\|WP_000226841.1\|3007154_3009389_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NC_011094.1\|WP_001261199.1\|3006451_3006748_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NC_011094.1\|WP_000480218.1\|3006713_3007070_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NC_011094.1\|WP_001199956.1\|3000830_3001502_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_011094.1\|WP_000186399.1\|3010793_3013550_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NC_011094.1\|WP_001290664.1\|2994176_2995889_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402

Protein	Function_ID	Function_description	E-value
NC_011094.1\|WP_001049217.1\|2987145_2988681_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_011094.1\|WP_001145539.1\|2992325_2993279_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_011094.1\|WP_000046865.1\|3009440_3010736_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NC_011094.1\|WP_000935101.1\|2986526_2987129_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.9872e-37
NC_011094.1\|WP_000108313.1\|2998123_2998486_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_011094.1\|WP_001530225.1\|2985445_2986504_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	4.62968e-122
NC_011094.1\|WP_000192882.1\|2989242_2991942_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.32798e-141
NC_011094.1\|WP_000210922.1\|2995888_2997688_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_011094.1\|WP_000210451.1\|3004883_3005684_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NC_011094.1\|WP_001207994.1\|2998573_2999371_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	4.95333e-103
NC_011094.1\|WP_000036734.1\|3001637_3002936_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_011094.1\|WP_000706486.1\|3013593_3014736_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NC_011094.1\|WP_000210864.1\|3003018_3004656_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_011094.1\|WP_000080397.1\|2993366_2994101_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.66828e-138
NC_011094.1\|WP_000226841.1\|3007154_3009389_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NC_011094.1\|WP_001261199.1\|3006451_3006748_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	4.79136e-12
NC_011094.1\|WP_000480218.1\|3006713_3007070_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NC_011094.1\|WP_001199956.1\|3000830_3001502_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NC_011094.1\|WP_000186399.1\|3010793_3013550_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NC_011094.1\|WP_001290664.1\|2994176_2995889_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0

>NC_011094.1|WP_001207994.1|2998573_2999371_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDDSFMQNASAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHNAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTMWRVRRFLQEQKPEKLCGCHCTGVWGRLWLPEITAPATGDVLRF
>NC_011094.1|WP_000108313.1|2998123_2998486_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_011094.1|WP_000210922.1|2995888_2997688_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMLGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLTDTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRVPVAAPSQSVATGAVNDIHTSPYTKDAPLTATLAVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NC_011094.1|WP_001290664.1|2994176_2995889_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKVKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_011094.1|WP_000080397.1|2993366_2994101_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVVWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_011094.1|WP_001145539.1|2992325_2993279_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTMISQSNIKDILNISDDTVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTSNAQIKVAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKIYLTHERSLHIGKDGCSRNILLT
>NC_011094.1|WP_000192882.1|2989242_2991942_+|CRISPR-associated-helicase/endonuclease-Cas3
MTQMEYLNYLRYWGKTNKSNKDITPPYHLLAYHCLDVAACGYYIIKNNIFDSRSILEKCGIIGTNAENWIIWFLASHDIGKFARGFQKYAEFPDSPLVSPVSGVSAFERHDSLGFYLWGKLFEAWSSGSNEIIAGIEPENRARFESALNSWMLISTGHHGIPPDTMKNRSSLAFTDEDIVAATHYLEALSELFPFTLPQEWKTKAGRKCLKQHSWFFAGLVTLADWMGSDESQFPLLSSAMPLKDYWPLACEKAQQAILRMPPLSQHSYYQDHRALFPFIQTLTPLQQRASELDISAPGAQLVVLEDVTGAGKTEAALILTHRLMSANKGHGLYVGLPTMATANAMYQRLASAYHALFTDESRPSLILAHGGREMSDSFRQSIWQPTENIAEDYARDDGNATTECHTWFADSRKKALLAEVGVGTLDQLLMAVMPFRHQSLRLLGMRDKILLLDEVHAYDGYMVKLLEGLLRFHAAQGGSAIILSATLPAALREKLLNAFSDGAGFMSAGGSDNAGYPWLSHLTSSGLLEQPLATRPEVQRTVAVNWIQQRQEALDIIYRVVATGQCICWIRNTVDDALDTYQQLLHEGIVPEQDLLLFHSRFAFIDRIAIENKTLNWFGNNAPVSERRGKVLIATQVVEQSLDLDFDWMITDLAPIDLLIQRAGRLQRHIRDAHGQQKSTLPDERQPPVLHILAPHWQEQAEEGWLGQELKGTGFVYADHACLWRTQALLRQHGEIRMPDNARALVDGVYEQKIAAPAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLACFRKRHHRPSGQVVLVSDAGEASYYSKRFGLVG
>NC_011094.1|WP_001049217.1|2987145_2988681_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLITEKWLPVIFSSGEKTRISLRDLLDNRIQDLAYPRPDFQGAAWQMLIGILQCTIAPEDKEEWADIWHDGIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNTLKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNSHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNNMSLWCFAFDMDNAKARCWYQHRIPLISVSHEEQFLAALNTVLVLASEALSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRALQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NC_011094.1|WP_000935101.1|2986526_2987129_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAALCRILHPDAQKALLDWFATLSERYERKDGKRVNGRVWRAELKRMAPPYGVMICEGYDALRQTLLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLNGSTPCVSVLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRTPFERNRIRWANEYLSTSRGK
>NC_011094.1|WP_001530225.1|2985445_2986504_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDDSGRPKTAYMGGVERLRVSSQSLKRAWRVSETFEGAMDGFMGKRTRRIGVDYVYRPMIAAGVTGKIAKSAAEKIAAQFGKLKSDKNAPEEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLATAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NC_011094.1|WP_001199956.1|3000830_3001502_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_011094.1|WP_000036734.1|3001637_3002936_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_011094.1|WP_000210864.1|3003018_3004656_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NC_011094.1|WP_000210451.1|3004883_3005684_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NC_011094.1|WP_001261199.1|3006451_3006748_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRTVKLTPKASEDLENIWHYGWLYFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFERHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NC_011094.1|WP_000480218.1|3006713_3007070_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NC_011094.1|WP_000226841.1|3007154_3009389_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NC_011094.1|WP_000046865.1|3009440_3010736_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVILTEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCLPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEVVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NC_011094.1|WP_000186399.1|3010793_3013550_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NC_011094.1|WP_000706486.1|3013593_3014736_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIVQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVGVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011094_1	1.4\|2982161\|32\|NC_011094\|CRISPRCasFinder,CRT	2982161-2982192	32	NZ_KY515226	Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence	95-126	0	1.0
NC_011094_1	1.4\|2982161\|32\|NC_011094\|CRISPRCasFinder,CRT	2982161-2982192	32	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	2585-2616	0	1.0
NC_011094_1	1.4\|2982161\|32\|NC_011094\|CRISPRCasFinder,CRT	2982161-2982192	32	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	105065-105096	0	1.0
NC_011094_1	1.4\|2982161\|32\|NC_011094\|CRISPRCasFinder,CRT	2982161-2982192	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	5506-5537	0	1.0
NC_011094_1	1.6\|2982283\|32\|NC_011094\|CRISPRCasFinder,CRT	2982283-2982314	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	515-546	0	1.0
NC_011094_1	1.12\|2982649\|32\|NC_011094\|CRISPRCasFinder,CRT	2982649-2982680	32	NC_010392	Phage Gifsy-1, complete genome	47888-47919	0	1.0
NC_011094_1	1.16\|2982162\|33\|NC_011094\|PILER-CR	2982162-2982194	33	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	5506-5538	0	1.0
NC_011094_1	1.18\|2982284\|33\|NC_011094\|PILER-CR	2982284-2982316	33	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	515-547	0	1.0
NC_011094_1	1.24\|2982650\|33\|NC_011094\|PILER-CR	2982650-2982682	33	NC_010392	Phage Gifsy-1, complete genome	47888-47920	0	1.0
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	32069-32100	1	0.969
NC_011094_1	1.10\|2982527\|32\|NC_011094\|CRISPRCasFinder,CRT	2982527-2982558	32	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	28847-28878	1	0.969
NC_011094_1	1.16\|2982162\|33\|NC_011094\|PILER-CR	2982162-2982194	33	NZ_KY515226	Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence	94-126	1	0.97
NC_011094_1	1.16\|2982162\|33\|NC_011094\|PILER-CR	2982162-2982194	33	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	2584-2616	1	0.97
NC_011094_1	1.16\|2982162\|33\|NC_011094\|PILER-CR	2982162-2982194	33	NZ_KP763470	Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence	105065-105097	1	0.97
NC_011094_1	1.19\|2982345\|33\|NC_011094\|PILER-CR	2982345-2982377	33	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	32069-32101	1	0.97
NC_011094_1	1.22\|2982528\|33\|NC_011094\|PILER-CR	2982528-2982560	33	CP053320	Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence	28846-28878	1	0.97
NC_011094_1	1.11\|2982588\|32\|NC_011094\|CRISPRCasFinder,CRT	2982588-2982619	32	LR597649	Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1	2256-2287	2	0.938
NC_011094_1	1.23\|2982589\|33\|NC_011094\|PILER-CR	2982589-2982621	33	LR597649	Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1	2256-2288	2	0.939
NC_011094_1	1.4\|2982161\|32\|NC_011094\|CRISPRCasFinder,CRT	2982161-2982192	32	NZ_CP014707	Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence	36455-36486	3	0.906
NC_011094_1	1.16\|2982162\|33\|NC_011094\|PILER-CR	2982162-2982194	33	NZ_CP014707	Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence	36455-36487	3	0.909
NC_011094_1	1.6\|2982283\|32\|NC_011094\|CRISPRCasFinder,CRT	2982283-2982314	32	CP054337	Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence	35260-35291	4	0.875
NC_011094_1	1.6\|2982283\|32\|NC_011094\|CRISPRCasFinder,CRT	2982283-2982314	32	MN232192	Escherichia coli plasmid pGD27-62, complete sequence	19009-19040	4	0.875
NC_011094_1	1.6\|2982283\|32\|NC_011094\|CRISPRCasFinder,CRT	2982283-2982314	32	MF510496	Klebsiella pneumoniae strain SCKP-LL83 plasmid pMCR_SCKP-LL83, complete sequence	19009-19040	4	0.875
NC_011094_1	1.6\|2982283\|32\|NC_011094\|CRISPRCasFinder,CRT	2982283-2982314	32	NZ_CP052881	Escherichia coli strain C21 plasmid pC21-4, complete sequence	84373-84404	4	0.875
NC_011094_1	1.6\|2982283\|32\|NC_011094\|CRISPRCasFinder,CRT	2982283-2982314	32	NZ_CP015837	Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence	35685-35716	4	0.875
NC_011094_1	1.6\|2982283\|32\|NC_011094\|CRISPRCasFinder,CRT	2982283-2982314	32	NZ_CP033848	Escherichia coli strain FDAARGOS_497 plasmid unnamed2, complete sequence	63168-63199	4	0.875
NC_011094_1	1.6\|2982283\|32\|NC_011094\|CRISPRCasFinder,CRT	2982283-2982314	32	NZ_LT985263	Escherichia coli strain 511 plasmid RCS54_p, complete sequence	112673-112704	4	0.875
NC_011094_1	1.6\|2982283\|32\|NC_011094\|CRISPRCasFinder,CRT	2982283-2982314	32	NZ_MG825379	Escherichia coli strain 1108 plasmid p1108-IncY, complete sequence	85306-85337	4	0.875
NC_011094_1	1.6\|2982283\|32\|NC_011094\|CRISPRCasFinder,CRT	2982283-2982314	32	NZ_MG288678	Klebsiella pneumoniae strain F160070 plasmid p160070-MCR, complete sequence	86224-86255	4	0.875
NC_011094_1	1.18\|2982284\|33\|NC_011094\|PILER-CR	2982284-2982316	33	MN232192	Escherichia coli plasmid pGD27-62, complete sequence	19008-19040	4	0.879
NC_011094_1	1.18\|2982284\|33\|NC_011094\|PILER-CR	2982284-2982316	33	MF510496	Klebsiella pneumoniae strain SCKP-LL83 plasmid pMCR_SCKP-LL83, complete sequence	19008-19040	4	0.879
NC_011094_1	1.18\|2982284\|33\|NC_011094\|PILER-CR	2982284-2982316	33	NZ_CP052881	Escherichia coli strain C21 plasmid pC21-4, complete sequence	84372-84404	4	0.879
NC_011094_1	1.18\|2982284\|33\|NC_011094\|PILER-CR	2982284-2982316	33	NZ_CP033848	Escherichia coli strain FDAARGOS_497 plasmid unnamed2, complete sequence	63167-63199	4	0.879
NC_011094_1	1.18\|2982284\|33\|NC_011094\|PILER-CR	2982284-2982316	33	NZ_MG825379	Escherichia coli strain 1108 plasmid p1108-IncY, complete sequence	85305-85337	4	0.879
NC_011094_1	1.18\|2982284\|33\|NC_011094\|PILER-CR	2982284-2982316	33	NZ_MG288678	Klebsiella pneumoniae strain F160070 plasmid p160070-MCR, complete sequence	86223-86255	4	0.879
NC_011094_1	1.18\|2982284\|33\|NC_011094\|PILER-CR	2982284-2982316	33	CP054337	Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence	35260-35292	4	0.879
NC_011094_1	1.18\|2982284\|33\|NC_011094\|PILER-CR	2982284-2982316	33	NZ_CP015837	Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence	35685-35717	4	0.879
NC_011094_1	1.18\|2982284\|33\|NC_011094\|PILER-CR	2982284-2982316	33	NZ_LT985263	Escherichia coli strain 511 plasmid RCS54_p, complete sequence	112673-112705	4	0.879
NC_011094_2	2.14\|3000291\|32\|NC_011094\|CRISPRCasFinder	3000291-3000322	32	NZ_CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	753044-753075	6	0.812
NC_011094_1	1.4\|2982161\|32\|NC_011094\|CRISPRCasFinder,CRT	2982161-2982192	32	NZ_CP044178	Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-1	11447-11478	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	18540-18571	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP021139	Sulfuriferula sp. AH1 plasmid unnamed, complete sequence	34949-34980	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	713509-713540	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1958338-1958369	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1607565-1607596	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1733499-1733530	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1309026-1309057	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1322594-1322625	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1412851-1412882	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1446942-1446973	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1412851-1412882	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1446942-1446973	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1412851-1412882	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1412054-1412085	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1446942-1446973	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1446942-1446973	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1446942-1446973	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	738218-738249	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1412850-1412881	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1446945-1446976	7	0.781
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_CP032686	Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence	282027-282058	7	0.781
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_CP032691	Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence	277006-277037	7	0.781
NC_011094_2	2.17\|3000474\|32\|NC_011094\|CRISPRCasFinder	3000474-3000505	32	MN693534	Marine virus AFVG_25M18, complete genome	95-126	7	0.781
NC_011094_2	2.17\|3000474\|32\|NC_011094\|CRISPRCasFinder	3000474-3000505	32	MN693534	Marine virus AFVG_25M18, complete genome	57231-57262	7	0.781
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP050076	Enterobacter kobei strain 070 plasmid p070_B, complete sequence	2769-2800	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP041049	Citrobacter sp. CF971 plasmid pBM527-3, complete sequence	2001-2032	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP022300	Acinetobacter johnsonii strain IC001 plasmid pIC001B, complete sequence	1471-1502	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_KX912255	Enterobacter cloacae strain H140960786 plasmid pJF-786, complete sequence	23292-23323	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_KX863568	Citrobacter freundii strain AtetA plasmid pLNU-11, complete sequence	34497-34528	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NC_022346	Pseudomonas aeruginosa strain ST308 plasmid pCOL-1, complete sequence	6722-6753	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	LC486677	Serratia marcescens MRY16-414SMA plasmid pMRY16-414SMA_2 DNA, complete sequence	27530-27561	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_KU578314	Pseudomonas aeruginosa strain 10265 plasmid p10265-KPC, complete sequence	37605-37636	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_KR014106	Aeromonas hydrophila strain WCHAH01 plasmid pKPC2, complete sequence	39677-39708	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	MN539620	Citrobacter sp. strain 172116965 plasmid p116965-KPC, complete sequence	38679-38710	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NC_007100	Pseudomonas aeruginosa plasmid Rms149, complete sequence	112-143	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	MN436715	Klebsiella pneumoniae strain NMI4661/17 plasmid pKRA-GES-5, complete sequence	14017-14048	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	LC155906	Achromobacter xylosoxidans plasmid pKUN4507_1 DNA, complete sequence, strain: KUN4507	2656-2687	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP027855	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-3, complete sequence	1966-1997	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP038596	Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.1, complete sequence	12810-12841	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_AP019194	Aeromonas hydrophila strain GSH8-2 plasmid pGSH8-2, complete sequence	37837-37868	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	KM659090	Achromobacter sp. LM16 plasmid pLM16A1, complete sequence	2611-2642	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_AP019197	Aeromonas caviae strain GSH8M-1 plasmid pGSH8M-1-2, complete sequence	52395-52426	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	DQ839391	Uncultured bacterium plasmid pRSB105, complete sequence	18510-18541	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	MK050973	Citrobacter freundii plasmid pCRE12-KPC, complete sequence	30111-30142	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP028566	Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 plasmid pKPC2_045096, complete sequence	37642-37673	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP019671	Burkholderia cenocepacia strain VC12308 plasmid unnamed, complete sequence	16427-16458	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP018968	Escherichia coli strain Ecol_542 plasmid pEC542_KPC, complete sequence	10052-10083	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_LS998784	Pseudomonas aeruginosa isolate 1 plasmid 2, complete sequence	22863-22894	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP026224	Aeromonas sp. ASNIH3 plasmid pKPC-cd17, complete sequence	34896-34927	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	MN477223	Enterobacter cloacae strain 30860 plasmid p30860-KPC, complete sequence	37679-37710	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP040685	Pseudomonas aeruginosa strain C79 plasmid p1, complete sequence	2881-2912	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NC_019267	Serratia marcescens plasmid pRIO-5, complete sequence	3873-3904	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NC_011604	Salmonella enterica subsp. enterica serovar Westhampton plasmid pWES-1, complete sequence	9118-9149	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NC_005909	Pseudomonas alcaligenes plasmid pRA2, complete sequence	19963-19994	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP026703	Serratia marcescens strain AR_0027 plasmid unitig_1_pilon, complete sequence	10311-10342	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_LT992437	Citrobacter freundii isolate CF121SC21 plasmid 1, complete sequence	38852-38883	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_MH909348	Klebsiella pneumoniae strain A1705 plasmid pA1705-KPC, complete sequence	40721-40752	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_MH909350	Klebsiella pneumoniae strain A1706 plasmid pA1706-KPC, complete sequence	17232-17263	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_MF497782	Morganella morganii strain Mmo-37590cz plasmid pMMO-37590cz, complete sequence	536-567	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_MH624130	Aeromonas taiwanensis strain L186 plasmid p186-KPC, complete sequence	2824-2855	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_MH919378	Citrobacter braakii strain CRE3 plasmid pCRE3-KPC, complete sequence	35841-35872	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP032895	Enterobacter kobei strain WCHEK045523 plasmid pKPC2_045523, complete sequence	41791-41822	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_MF168945	Pseudomonas aeruginosa strain FFUP_PS_35 plasmid pJB35, complete sequence	21390-21421	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_MG558000	Citrobacter freundii strain Cfr-33795cz plasmid pCfr-33795cz, complete sequence	536-567	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NC_047756	Caulobacter phage Sansa, complete genome	24638-24669	8	0.75
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP017941	Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence	466363-466394	8	0.75
NC_011094_1	1.19\|2982345\|33\|NC_011094\|PILER-CR	2982345-2982377	33	NZ_CP014600	Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence	18540-18572	8	0.758
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NC_024970	Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence	16478-16509	8	0.75
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_KJ396772	Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence	16478-16509	8	0.75
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_CP048284	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence	242615-242646	8	0.75
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_CP024986	Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence	224573-224604	8	0.75
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_CP054026	Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence	285767-285798	8	0.75
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	494228-494259	8	0.75
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_CP032928	Agrobacterium tumefaciens strain 1D1460 plasmid pAt1D1460, complete sequence	267700-267731	8	0.75
NC_011094_1	1.5\|2982222\|32\|NC_011094\|CRISPRCasFinder,CRT	2982222-2982253	32	MT374854	Yersinia phage vB_YpM_6, complete genome	883-914	9	0.719
NC_011094_1	1.5\|2982222\|32\|NC_011094\|CRISPRCasFinder,CRT	2982222-2982253	32	MT374853	Yersinia phage vB_YpM_5, complete genome	2308-2339	9	0.719
NC_011094_1	1.6\|2982283\|32\|NC_011094\|CRISPRCasFinder,CRT	2982283-2982314	32	HG796856	Uncultured bacterium plasmid pRGF00250	451-482	9	0.719
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP034654	Xanthomonas vasicola pv. arecae strain NCPPB 2649 plasmid pXCARECAE29, complete sequence	10636-10667	9	0.719
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP015374	Pandoraea pnomenusa strain MCB032 plasmid unnamed 3, complete sequence	16041-16072	9	0.719
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NC_016053	Xanthomonas arboricola pv. pruni str. CFBP 5530 plasmid pXap41, complete sequence	36980-37011	9	0.719
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_LR594694	Variovorax sp. WDL1 plasmid 6	124-155	9	0.719
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_MF344578	Pseudomonas aeruginosa strain 60512 plasmid p60512-IMP, complete sequence	23499-23530	9	0.719
NC_011094_1	1.11\|2982588\|32\|NC_011094\|CRISPRCasFinder,CRT	2982588-2982619	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	59147-59178	9	0.719
NC_011094_1	1.19\|2982345\|33\|NC_011094\|PILER-CR	2982345-2982377	33	NC_047756	Caulobacter phage Sansa, complete genome	24637-24669	9	0.727
NC_011094_1	1.23\|2982589\|33\|NC_011094\|PILER-CR	2982589-2982621	33	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	59147-59179	9	0.727
NC_011094_2	2.1\|2999498\|32\|NC_011094\|CRISPRCasFinder	2999498-2999529	32	NC_047851	Brevibacterium phage LuckyBarnes, complete genome	31262-31293	9	0.719
NC_011094_2	2.8\|2999925\|32\|NC_011094\|CRISPRCasFinder	2999925-2999956	32	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	1340-1371	9	0.719
NC_011094_2	2.8\|2999925\|32\|NC_011094\|CRISPRCasFinder	2999925-2999956	32	KX156762	Staphylococcus phage vB_SauS_IMEP5, complete genome	15936-15967	9	0.719
NC_011094_2	2.10\|3000047\|32\|NC_011094\|CRISPRCasFinder	3000047-3000078	32	NC_015851	Acidithiobacillus caldus SM-1 megaplasmid, complete sequence	79853-79884	9	0.719
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	40929-40960	9	0.719
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	157802-157833	9	0.719
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	179339-179370	9	0.719
NC_011094_1	1.7\|2982344\|32\|NC_011094\|CRISPRCasFinder,CRT	2982344-2982375	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	243222-243253	10	0.688
NC_011094_1	1.19\|2982345\|33\|NC_011094\|PILER-CR	2982345-2982377	33	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	243222-243254	10	0.697
NC_011094_2	2.8\|2999925\|32\|NC_011094\|CRISPRCasFinder	2999925-2999956	32	NZ_CP032824	Arcobacter cryaerophilus ATCC 43158 plasmid pACRY43158, complete sequence	24667-24698	10	0.688
NC_011094_2	2.8\|2999925\|32\|NC_011094\|CRISPRCasFinder	2999925-2999956	32	NZ_CP009417	Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence	396582-396613	10	0.688
NC_011094_2	2.13\|3000230\|32\|NC_011094\|CRISPRCasFinder	3000230-3000261	32	NZ_CP022567	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence	24503-24534	10	0.688
NC_011094_2	2.34\|3000471\|35\|NC_011094\|CRT,PILER-CR	3000471-3000505	35	MN693534	Marine virus AFVG_25M18, complete genome	92-126	10	0.714
NC_011094_2	2.34\|3000471\|35\|NC_011094\|CRT,PILER-CR	3000471-3000505	35	MN693534	Marine virus AFVG_25M18, complete genome	57228-57262	10	0.714
NC_011094_2	2.25\|2999922\|35\|NC_011094\|CRT,PILER-CR	2999922-2999956	35	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	1337-1371	11	0.686
NC_011094_2	2.30\|3000227\|35\|NC_011094\|CRT,PILER-CR	3000227-3000261	35	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	40926-40960	11	0.686
NC_011094_2	2.30\|3000227\|35\|NC_011094\|CRT,PILER-CR	3000227-3000261	35	NZ_CP048284	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence	242612-242646	11	0.686
NC_011094_2	2.30\|3000227\|35\|NC_011094\|CRT,PILER-CR	3000227-3000261	35	NZ_CP054026	Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence	285764-285798	11	0.686

1. spacer 1.4|2982161|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 0, identity: 1.0

agaaaattatcactgacgagtgacaataactc	CRISPR spacer
agaaaattatcactgacgagtgacaataactc	Protospacer
********************************

2. spacer 1.4|2982161|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 0, identity: 1.0

agaaaattatcactgacgagtgacaataactc	CRISPR spacer
agaaaattatcactgacgagtgacaataactc	Protospacer
********************************

3. spacer 1.4|2982161|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 0, identity: 1.0

agaaaattatcactgacgagtgacaataactc	CRISPR spacer
agaaaattatcactgacgagtgacaataactc	Protospacer
********************************

4. spacer 1.4|2982161|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

agaaaattatcactgacgagtgacaataactc	CRISPR spacer
agaaaattatcactgacgagtgacaataactc	Protospacer
********************************

5. spacer 1.6|2982283|32|NC_011094|CRISPRCasFinder,CRT matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ggtttacagacctcaataaaaagacggcaggc	CRISPR spacer
ggtttacagacctcaataaaaagacggcaggc	Protospacer
********************************

6. spacer 1.12|2982649|32|NC_011094|CRISPRCasFinder,CRT matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 0, identity: 1.0

ctcaaacgaacgcagtatttgatcggatgttt	CRISPR spacer
ctcaaacgaacgcagtatttgatcggatgttt	Protospacer
********************************

7. spacer 1.16|2982162|33|NC_011094|PILER-CR matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 0, identity: 1.0

agaaaattatcactgacgagtgacaataactcc	CRISPR spacer
agaaaattatcactgacgagtgacaataactcc	Protospacer
*********************************

8. spacer 1.18|2982284|33|NC_011094|PILER-CR matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

ggtttacagacctcaataaaaagacggcaggcc	CRISPR spacer
ggtttacagacctcaataaaaagacggcaggcc	Protospacer
*********************************

9. spacer 1.24|2982650|33|NC_011094|PILER-CR matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 0, identity: 1.0

ctcaaacgaacgcagtatttgatcggatgtttc	CRISPR spacer
ctcaaacgaacgcagtatttgatcggatgtttc	Protospacer
*********************************

10. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.969

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gtcagcgccggcgatcgggccgccgattttgt	Protospacer
***************.****************

11. spacer 1.10|2982527|32|NC_011094|CRISPRCasFinder,CRT matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.969

gcgcttgatctcccgttatctaagggccaatc	CRISPR spacer
gcacttgatctcccgttatctaagggccaatc	Protospacer
**.*****************************

12. spacer 1.16|2982162|33|NC_011094|PILER-CR matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 1, identity: 0.97

agaaaattatcactgacgagtgacaataactcc	CRISPR spacer
agaaaattatcactgacgagtgacaataactca	Protospacer
********************************

13. spacer 1.16|2982162|33|NC_011094|PILER-CR matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 1, identity: 0.97

agaaaattatcactgacgagtgacaataactcc	CRISPR spacer
agaaaattatcactgacgagtgacaataactca	Protospacer
********************************

14. spacer 1.16|2982162|33|NC_011094|PILER-CR matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 1, identity: 0.97

agaaaattatcactgacgagtgacaataactcc	CRISPR spacer
agaaaattatcactgacgagtgacaataactca	Protospacer
********************************

15. spacer 1.19|2982345|33|NC_011094|PILER-CR matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.97

gtcagcgccggcgattgggccgccgattttgtc	CRISPR spacer
gtcagcgccggcgatcgggccgccgattttgtc	Protospacer
***************.*****************

16. spacer 1.22|2982528|33|NC_011094|PILER-CR matches to CP053320 (Salmonella enterica subsp. arizonae serovar 41:z4,z23:- strain 2016K-0011 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.97

gcgcttgatctcccgttatctaagggccaatcc	CRISPR spacer
gcacttgatctcccgttatctaagggccaatcc	Protospacer
**.******************************

17. spacer 1.11|2982588|32|NC_011094|CRISPRCasFinder,CRT matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.938

gcatcggtggcgctggccagttcaaaaatacg	CRISPR spacer
gcatcggtagcactggccagttcaaaaatacg	Protospacer
********.**.********************

18. spacer 1.23|2982589|33|NC_011094|PILER-CR matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 2, identity: 0.939

gcatcggtggcgctggccagttcaaaaatacgc	CRISPR spacer
gcatcggtagcactggccagttcaaaaatacgc	Protospacer
********.**.*********************

19. spacer 1.4|2982161|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP014707 (Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence) position: , mismatch: 3, identity: 0.906

agaaaattatcactgacgagtgacaataactc	CRISPR spacer
aaaaaactatcactgaccagtgacaataactc	Protospacer
*.****.********** **************

20. spacer 1.16|2982162|33|NC_011094|PILER-CR matches to NZ_CP014707 (Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence) position: , mismatch: 3, identity: 0.909

agaaaattatcactgacgagtgacaataactcc	CRISPR spacer
aaaaaactatcactgaccagtgacaataactcc	Protospacer
*.****.********** ***************

21. spacer 1.6|2982283|32|NC_011094|CRISPRCasFinder,CRT matches to CP054337 (Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence) position: , mismatch: 4, identity: 0.875

ggtttacagacctcaataaaaagacggcaggc	CRISPR spacer
gatttaccgacctcaataagaagacggcagga	Protospacer
*.***** ***********.***********

22. spacer 1.6|2982283|32|NC_011094|CRISPRCasFinder,CRT matches to MN232192 (Escherichia coli plasmid pGD27-62, complete sequence) position: , mismatch: 4, identity: 0.875

ggtttacagacctcaataaaaagacggcaggc	CRISPR spacer
gatttaccgacctcaataagaagacggcagga	Protospacer
*.***** ***********.***********

23. spacer 1.6|2982283|32|NC_011094|CRISPRCasFinder,CRT matches to MF510496 (Klebsiella pneumoniae strain SCKP-LL83 plasmid pMCR_SCKP-LL83, complete sequence) position: , mismatch: 4, identity: 0.875

ggtttacagacctcaataaaaagacggcaggc	CRISPR spacer
gatttaccgacctcaataagaagacggcagga	Protospacer
*.***** ***********.***********

24. spacer 1.6|2982283|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052881 (Escherichia coli strain C21 plasmid pC21-4, complete sequence) position: , mismatch: 4, identity: 0.875

ggtttacagacctcaataaaaagacggcaggc	CRISPR spacer
gatttaccgacctcaataagaagacggcagga	Protospacer
*.***** ***********.***********

25. spacer 1.6|2982283|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 4, identity: 0.875

ggtttacagacctcaataaaaagacggcaggc	CRISPR spacer
gatttaccgacctcaataagaagacggcagga	Protospacer
*.***** ***********.***********

26. spacer 1.6|2982283|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP033848 (Escherichia coli strain FDAARGOS_497 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.875

ggtttacagacctcaataaaaagacggcaggc	CRISPR spacer
gatttaccgacctcaataagaagacggcagga	Protospacer
*.***** ***********.***********

27. spacer 1.6|2982283|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_LT985263 (Escherichia coli strain 511 plasmid RCS54_p, complete sequence) position: , mismatch: 4, identity: 0.875

ggtttacagacctcaataaaaagacggcaggc	CRISPR spacer
gatttaccgacctcaataagaagacggcagga	Protospacer
*.***** ***********.***********

28. spacer 1.6|2982283|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_MG825379 (Escherichia coli strain 1108 plasmid p1108-IncY, complete sequence) position: , mismatch: 4, identity: 0.875

ggtttacagacctcaataaaaagacggcaggc	CRISPR spacer
gatttaccgacctcaataagaagacggcagga	Protospacer
*.***** ***********.***********

29. spacer 1.6|2982283|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_MG288678 (Klebsiella pneumoniae strain F160070 plasmid p160070-MCR, complete sequence) position: , mismatch: 4, identity: 0.875

ggtttacagacctcaataaaaagacggcaggc	CRISPR spacer
gatttaccgacctcaataagaagacggcagga	Protospacer
*.***** ***********.***********

30. spacer 1.18|2982284|33|NC_011094|PILER-CR matches to MN232192 (Escherichia coli plasmid pGD27-62, complete sequence) position: , mismatch: 4, identity: 0.879

ggtttacagacctcaataaaaagacggcaggcc	CRISPR spacer
gatttaccgacctcaataagaagacggcaggac	Protospacer
*.***** ***********.*********** *

31. spacer 1.18|2982284|33|NC_011094|PILER-CR matches to MF510496 (Klebsiella pneumoniae strain SCKP-LL83 plasmid pMCR_SCKP-LL83, complete sequence) position: , mismatch: 4, identity: 0.879

ggtttacagacctcaataaaaagacggcaggcc	CRISPR spacer
gatttaccgacctcaataagaagacggcaggac	Protospacer
*.***** ***********.*********** *

32. spacer 1.18|2982284|33|NC_011094|PILER-CR matches to NZ_CP052881 (Escherichia coli strain C21 plasmid pC21-4, complete sequence) position: , mismatch: 4, identity: 0.879

ggtttacagacctcaataaaaagacggcaggcc	CRISPR spacer
gatttaccgacctcaataagaagacggcaggac	Protospacer
*.***** ***********.*********** *

33. spacer 1.18|2982284|33|NC_011094|PILER-CR matches to NZ_CP033848 (Escherichia coli strain FDAARGOS_497 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.879

ggtttacagacctcaataaaaagacggcaggcc	CRISPR spacer
gatttaccgacctcaataagaagacggcaggac	Protospacer
*.***** ***********.*********** *

34. spacer 1.18|2982284|33|NC_011094|PILER-CR matches to NZ_MG825379 (Escherichia coli strain 1108 plasmid p1108-IncY, complete sequence) position: , mismatch: 4, identity: 0.879

ggtttacagacctcaataaaaagacggcaggcc	CRISPR spacer
gatttaccgacctcaataagaagacggcaggac	Protospacer
*.***** ***********.*********** *

35. spacer 1.18|2982284|33|NC_011094|PILER-CR matches to NZ_MG288678 (Klebsiella pneumoniae strain F160070 plasmid p160070-MCR, complete sequence) position: , mismatch: 4, identity: 0.879

ggtttacagacctcaataaaaagacggcaggcc	CRISPR spacer
gatttaccgacctcaataagaagacggcaggac	Protospacer
*.***** ***********.*********** *

36. spacer 1.18|2982284|33|NC_011094|PILER-CR matches to CP054337 (Escherichia coli strain SCU-120 plasmid pSCU-120-2, complete sequence) position: , mismatch: 4, identity: 0.879

ggtttacagacctcaataaaaagacggcaggcc	CRISPR spacer
gatttaccgacctcaataagaagacggcaggac	Protospacer
*.***** ***********.*********** *

37. spacer 1.18|2982284|33|NC_011094|PILER-CR matches to NZ_CP015837 (Escherichia coli strain MS6198 plasmid pMS6198C, complete sequence) position: , mismatch: 4, identity: 0.879

ggtttacagacctcaataaaaagacggcaggcc	CRISPR spacer
gatttaccgacctcaataagaagacggcaggac	Protospacer
*.***** ***********.*********** *

38. spacer 1.18|2982284|33|NC_011094|PILER-CR matches to NZ_LT985263 (Escherichia coli strain 511 plasmid RCS54_p, complete sequence) position: , mismatch: 4, identity: 0.879

ggtttacagacctcaataaaaagacggcaggcc	CRISPR spacer
gatttaccgacctcaataagaagacggcaggac	Protospacer
*.***** ***********.*********** *

39. spacer 2.14|3000291|32|NC_011094|CRISPRCasFinder matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 6, identity: 0.812

tgccaggcgtggggttatgacaatgctgaggc-	CRISPR spacer
ggccaggcgtggggtcatgacaat-ccgtcgca	Protospacer
 **************.******** *.*  **

40. spacer 1.4|2982161|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP044178 (Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-1) position: , mismatch: 7, identity: 0.781

agaaaattatcactgacgagtgacaataactc	CRISPR spacer
aaaaggctttcactgacgagtaataataactc	Protospacer
*.**...* ************.*.********

41. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gccagcgccagcgattgggccgccgaggccgg	Protospacer
*.*******.****************  ..*

42. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP021139 (Sulfuriferula sp. AH1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtgctgga	Protospacer
* ******* ***************  .* *

43. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

44. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

45. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

46. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

47. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

48. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

49. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

50. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

51. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

52. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

53. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

54. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

55. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

56. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

57. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

58. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

59. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

60. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 7, identity: 0.781

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gacagcgccggcgattgggcggccggtgctca	Protospacer
* ****************** ****.* .*

61. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 7, identity: 0.781

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
accaagcctccggcaagctaccggtcgagacg	Protospacer
 *** * . ********** ********* **

62. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 7, identity: 0.781

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
accaagcctccggcaagctaccggtcgagacg	Protospacer
 *** * . ********** ********* **

63. spacer 2.17|3000474|32|NC_011094|CRISPRCasFinder matches to MN693534 (Marine virus AFVG_25M18, complete genome) position: , mismatch: 7, identity: 0.781

ttcttataaaatcaataggttagctacatagc	CRISPR spacer
atctaataaaatcaataagttagctaaaaatg	Protospacer
 *** ************.******** * *

64. spacer 2.17|3000474|32|NC_011094|CRISPRCasFinder matches to MN693534 (Marine virus AFVG_25M18, complete genome) position: , mismatch: 7, identity: 0.781

ttcttataaaatcaataggttagctacatagc	CRISPR spacer
atctaataaaatcaataagttagctaaaaatg	Protospacer
 *** ************.******** * *

65. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP050076 (Enterobacter kobei strain 070 plasmid p070_B, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtgcggga	Protospacer
* ******* ***************  .  *

66. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP041049 (Citrobacter sp. CF971 plasmid pBM527-3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

67. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP022300 (Acinetobacter johnsonii strain IC001 plasmid pIC001B, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtgcgcga	Protospacer
* ******* ***************  . .*

68. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_KX912255 (Enterobacter cloacae strain H140960786 plasmid pJF-786, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

69. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_KX863568 (Citrobacter freundii strain AtetA plasmid pLNU-11, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

70. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NC_022346 (Pseudomonas aeruginosa strain ST308 plasmid pCOL-1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

71. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to LC486677 (Serratia marcescens MRY16-414SMA plasmid pMRY16-414SMA_2 DNA, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

72. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_KU578314 (Pseudomonas aeruginosa strain 10265 plasmid p10265-KPC, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

73. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_KR014106 (Aeromonas hydrophila strain WCHAH01 plasmid pKPC2, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

74. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to MN539620 (Citrobacter sp. strain 172116965 plasmid p116965-KPC, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

75. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NC_007100 (Pseudomonas aeruginosa plasmid Rms149, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

76. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to MN436715 (Klebsiella pneumoniae strain NMI4661/17 plasmid pKRA-GES-5, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

77. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to LC155906 (Achromobacter xylosoxidans plasmid pKUN4507_1 DNA, complete sequence, strain: KUN4507) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtgcagga	Protospacer
* ******* ***************  .  *

78. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP027855 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

79. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP038596 (Salmonella enterica subsp. enterica serovar Hadar strain 12-2388 plasmid p12-2388.1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

80. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_AP019194 (Aeromonas hydrophila strain GSH8-2 plasmid pGSH8-2, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

81. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to KM659090 (Achromobacter sp. LM16 plasmid pLM16A1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtgcggga	Protospacer
* ******* ***************  .  *

82. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_AP019197 (Aeromonas caviae strain GSH8M-1 plasmid pGSH8M-1-2, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

83. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to DQ839391 (Uncultured bacterium plasmid pRSB105, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

84. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to MK050973 (Citrobacter freundii plasmid pCRE12-KPC, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

85. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP028566 (Aeromonas hydrophila subsp. hydrophila strain WCHAH045096 plasmid pKPC2_045096, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

86. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP019671 (Burkholderia cenocepacia strain VC12308 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtgcggga	Protospacer
* ******* ***************  .  *

87. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP018968 (Escherichia coli strain Ecol_542 plasmid pEC542_KPC, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

88. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_LS998784 (Pseudomonas aeruginosa isolate 1 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

89. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP026224 (Aeromonas sp. ASNIH3 plasmid pKPC-cd17, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

90. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to MN477223 (Enterobacter cloacae strain 30860 plasmid p30860-KPC, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

91. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP040685 (Pseudomonas aeruginosa strain C79 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

92. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NC_019267 (Serratia marcescens plasmid pRIO-5, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

93. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NC_011604 (Salmonella enterica subsp. enterica serovar Westhampton plasmid pWES-1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtgcggga	Protospacer
* ******* ***************  .  *

94. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NC_005909 (Pseudomonas alcaligenes plasmid pRA2, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

95. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP026703 (Serratia marcescens strain AR_0027 plasmid unitig_1_pilon, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtgcggga	Protospacer
* ******* ***************  .  *

96. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_LT992437 (Citrobacter freundii isolate CF121SC21 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

97. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_MH909348 (Klebsiella pneumoniae strain A1705 plasmid pA1705-KPC, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

98. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_MH909350 (Klebsiella pneumoniae strain A1706 plasmid pA1706-KPC, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

99. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_MF497782 (Morganella morganii strain Mmo-37590cz plasmid pMMO-37590cz, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

100. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_MH624130 (Aeromonas taiwanensis strain L186 plasmid p186-KPC, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

101. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_MH919378 (Citrobacter braakii strain CRE3 plasmid pCRE3-KPC, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

102. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP032895 (Enterobacter kobei strain WCHEK045523 plasmid pKPC2_045523, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

103. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_MF168945 (Pseudomonas aeruginosa strain FFUP_PS_35 plasmid pJB35, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtgcggga	Protospacer
* ******* ***************  .  *

104. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_MG558000 (Citrobacter freundii strain Cfr-33795cz plasmid pCfr-33795cz, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggccgccgtccgcga	Protospacer
* ******* *************** .. .*

105. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NC_047756 (Caulobacter phage Sansa, complete genome) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gatagcgccgccgatcgggccgccgatcgcgg	Protospacer
* .******* ****.***********. .*

106. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP017941 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
gaatgcgccgacgattgtgccgccgatcctgc	Protospacer
*   ******.****** *********..**.

107. spacer 1.19|2982345|33|NC_011094|PILER-CR matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

gtcagcgccggcgattgggccgccgattttgtc	CRISPR spacer
gccagcgccagcgattgggccgccgaggccggg	Protospacer
*.*******.****************  ..*

108. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NC_024970 (Streptomyces aureofaciens strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
ccttcgatgccggcgagctcccggtcgtagag	Protospacer
.*. **********.************ .  *

109. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_KJ396772 (Streptomyces lavendulae subsp. lavendulae strain CCM3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
ccttcgatgccggcgagctcccggtcgtagag	Protospacer
.*. **********.************ .  *

110. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_CP048284 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
cgcacgatgccggcaagctccagggcgccggg	Protospacer
. ******************* ** **    *

111. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_CP024986 (Streptomyces lavendulae subsp. lavendulae strain CCM 3239 plasmid pSA3239, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
ccttcgatgccggcgagctcccggtcgtagag	Protospacer
.*. **********.************ .  *

112. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_CP054026 (Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
cgcacgatgccggcaagctccagggcgccggg	Protospacer
. ******************* ** **    *

113. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
gtcagcagcccggcaagcacccagtcgagccg	Protospacer
 .**  *  ********* ***.*********

114. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_CP032928 (Agrobacterium tumefaciens strain 1D1460 plasmid pAt1D1460, complete sequence) position: , mismatch: 8, identity: 0.75

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
gccgtgaagccggcaagctcccgatcgacggg	Protospacer
 **..** ***************.****   *

115. spacer 1.5|2982222|32|NC_011094|CRISPRCasFinder,CRT matches to MT374854 (Yersinia phage vB_YpM_6, complete genome) position: , mismatch: 9, identity: 0.719

ggaggtgatccgggatttaaacaaaatgatta	CRISPR spacer
gataatgacacgggatttaaacaaaatggcga	Protospacer
*. ..***. ******************.. *

116. spacer 1.5|2982222|32|NC_011094|CRISPRCasFinder,CRT matches to MT374853 (Yersinia phage vB_YpM_5, complete genome) position: , mismatch: 9, identity: 0.719

ggaggtgatccgggatttaaacaaaatgatta	CRISPR spacer
gataatgacacgggatttaaacaaaatggcga	Protospacer
*. ..***. ******************.. *

117. spacer 1.6|2982283|32|NC_011094|CRISPRCasFinder,CRT matches to HG796856 (Uncultured bacterium plasmid pRGF00250) position: , mismatch: 9, identity: 0.719

ggtttacagacctcaataaaaagacggcaggc	CRISPR spacer
tgtttactgacctcaaaaaaaagaaaaaacga	Protospacer
 ****** ******** ******* .. * *

118. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP034654 (Xanthomonas vasicola pv. arecae strain NCPPB 2649 plasmid pXCARECAE29, complete sequence) position: , mismatch: 9, identity: 0.719

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggctgccgtgcgcga	Protospacer
* ******* **********.****  . .*

119. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP015374 (Pandoraea pnomenusa strain MCB032 plasmid unnamed 3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggcggccgtgcggga	Protospacer
* ******* ********** ****  .  *

120. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NC_016053 (Xanthomonas arboricola pv. pruni str. CFBP 5530 plasmid pXap41, complete sequence) position: , mismatch: 9, identity: 0.719

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggcggccgtgcggga	Protospacer
* ******* ********** ****  .  *

121. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_LR594694 (Variovorax sp. WDL1 plasmid 6) position: , mismatch: 9, identity: 0.719

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggcggccgtgcggga	Protospacer
* ******* ********** ****  .  *

122. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_MF344578 (Pseudomonas aeruginosa strain 60512 plasmid p60512-IMP, complete sequence) position: , mismatch: 9, identity: 0.719

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
ggcagcgcccgcgattgggctgccgtgcggga	Protospacer
* ******* **********.****  .  *

123. spacer 1.11|2982588|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

gcatcggtggcgctggccagttcaaaaatacg	CRISPR spacer
attgcggtggcgacggccagttcaaaaaaatt	Protospacer
..  ******** .************** *.

124. spacer 1.19|2982345|33|NC_011094|PILER-CR matches to NC_047756 (Caulobacter phage Sansa, complete genome) position: , mismatch: 9, identity: 0.727

gtcagcgccggcgattgggccgccgattttgtc	CRISPR spacer
gatagcgccgccgatcgggccgccgatcgcggt	Protospacer
* .******* ****.***********. .* .

125. spacer 1.23|2982589|33|NC_011094|PILER-CR matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.727

gcatcggtggcgctggccagttcaaaaatacgc	CRISPR spacer
attgcggtggcgacggccagttcaaaaaaattc	Protospacer
..  ******** .************** *. *

126. spacer 2.1|2999498|32|NC_011094|CRISPRCasFinder matches to NC_047851 (Brevibacterium phage LuckyBarnes, complete genome) position: , mismatch: 9, identity: 0.719

tcgtagtcttccgggtaggcgttttcatccgg	CRISPR spacer
gccagctcttcccggtaggcgatttcatctgc	Protospacer
 *  . ****** ******** *******.*

127. spacer 2.8|2999925|32|NC_011094|CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 9, identity: 0.719

gggtactgacaatagtacaaataaaaaaaacg	CRISPR spacer
ttaaactggcaatagaacaaataaaaaaagat	Protospacer
  . ****.****** *************.

128. spacer 2.8|2999925|32|NC_011094|CRISPRCasFinder matches to KX156762 (Staphylococcus phage vB_SauS_IMEP5, complete genome) position: , mismatch: 9, identity: 0.719

gggtactgacaatagtacaaataaaaaaaacg	CRISPR spacer
cgtgtttgacacttgtacaaataaaaaaagag	Protospacer
 *   .***** * ***************. *

129. spacer 2.10|3000047|32|NC_011094|CRISPRCasFinder matches to NC_015851 (Acidithiobacillus caldus SM-1 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ggttttggctatctgagcggcgtccgccgccg	CRISPR spacer
atcgcctgctatctgagcggcttccgccgccc	Protospacer
. . .. ************** *********

130. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
gccacgatgccggcgaactcccggtccgcgaa	Protospacer
 *************.*.********* .   .

131. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgatgccggcaagctcccggtcgagccg--	CRISPR spacer
cggacgatgccggcaagttccccgtc--ctcggt	Protospacer
.  **************.**** ***   .**

132. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 9, identity: 0.719

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
cggacgatgccggcaagctccagggcgccggg	Protospacer
.  ****************** ** **    *

133. spacer 1.7|2982344|32|NC_011094|CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

gtcagcgccggcgattgggccgccgattttgt	CRISPR spacer
tccagcgccagcgattgggccaccgagaccag	Protospacer
 .*******.***********.****  ...

134. spacer 1.19|2982345|33|NC_011094|PILER-CR matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.697

gtcagcgccggcgattgggccgccgattttgtc	CRISPR spacer
tccagcgccagcgattgggccaccgagaccagc	Protospacer
 .*******.***********.****  ... *

135. spacer 2.8|2999925|32|NC_011094|CRISPRCasFinder matches to NZ_CP032824 (Arcobacter cryaerophilus ATCC 43158 plasmid pACRY43158, complete sequence) position: , mismatch: 10, identity: 0.688

gggtactgacaatagtacaaataaaaaaaacg	CRISPR spacer
aaaaaaagacattagtaaaaataaaaaaaata	Protospacer
... *  **** ***** ************..

136. spacer 2.8|2999925|32|NC_011094|CRISPRCasFinder matches to NZ_CP009417 (Jeotgalibacillus malaysiensis strain malaysiensis plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gggtactgacaatagtacaaataaaaaaaacg	CRISPR spacer
tattgttgacaatagtcaaaataaaaaaagaa	Protospacer
 . *..**********  ***********. .

137. spacer 2.13|3000230|32|NC_011094|CRISPRCasFinder matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 10, identity: 0.688

tccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
agcgttatgccggcaagttcccggccgaggaa	Protospacer
  *.. ***********.******.****  .

138. spacer 2.34|3000471|35|NC_011094|CRT,PILER-CR matches to MN693534 (Marine virus AFVG_25M18, complete genome) position: , mismatch: 10, identity: 0.714

tacttcttataaaatcaataggttagctacatagc	CRISPR spacer
cttatctaataaaatcaataagttagctaaaaatg	Protospacer
. . *** ************.******** * *

139. spacer 2.34|3000471|35|NC_011094|CRT,PILER-CR matches to MN693534 (Marine virus AFVG_25M18, complete genome) position: , mismatch: 10, identity: 0.714

tacttcttataaaatcaataggttagctacatagc	CRISPR spacer
cttatctaataaaatcaataagttagctaaaaatg	Protospacer
. . *** ************.******** * *

140. spacer 2.25|2999922|35|NC_011094|CRT,PILER-CR matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 11, identity: 0.686

cacgggtactgacaatagtacaaataaaaaaaacg	CRISPR spacer
ctattaaactggcaatagaacaaataaaaaaagat	Protospacer
*    . ****.****** *************.

141. spacer 2.30|3000227|35|NC_011094|CRT,PILER-CR matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 11, identity: 0.686

tactccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
tgtgccacgatgccggcgaactcccggtccgcgaa	Protospacer
*.. *************.*.********* .   .

142. spacer 2.30|3000227|35|NC_011094|CRT,PILER-CR matches to NZ_CP048284 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248b, complete sequence) position: , mismatch: 11, identity: 0.686

tactccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
ccgcgcacgatgccggcaagctccagggcgccggg	Protospacer
.  . ******************* ** **    *

143. spacer 2.30|3000227|35|NC_011094|CRT,PILER-CR matches to NZ_CP054026 (Rhizobium sp. JKLM12A2 plasmid pPR12A205, complete sequence) position: , mismatch: 11, identity: 0.686

tactccacgatgccggcaagctcccggtcgagccg	CRISPR spacer
ccgcgcacgatgccggcaagctccagggcgccggg	Protospacer
.  . ******************* ** **    *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

586187 : 699362

147

Salmonella_phage(47.32%)

integrase,portal,capsid,terminase,tRNA,protease,tail,lysis,holin

attL 600667:600687|attR 696436:696456

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912377.1\|586187_587573_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.1e-44	35.5
WP_000819116.1\|587616_588441_-	DUF2145 domain-containing protein	NA	NA	NA	NA
WP_001038576.1\|588437_588875_-	STM0539 family protein	NA	NA	NA	NA
WP_001143505.1\|588867_589413_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190281.1\|589540_589753_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729165.1\|589754_590621_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	4.2e-29	36.5
WP_000681026.1\|591167_591725_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000619614.1\|591799_592333_+	type 1 fimbrial protein subunit FimI	NA	NA	NA	NA
WP_001531073.1\|592376_593069_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_000754218.1\|593099_595712_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000708659.1\|595726_596734_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_000603406.1\|596743_597262_+	fimbria assembly protein	NA	NA	NA	NA
WP_000801272.1\|597307_597940_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
WP_001258113.1\|598543_599266_-	fimbria biosynthesis regulator FimY	NA	NA	NA	NA
WP_000226498.1\|599284_599596_-	hypothetical protein	NA	NA	NA	NA
WP_000948629.1\|599757_600354_-	fimbria biosynthesis transcriptional regulator FimW	NA	NA	NA	NA
600667:600687	attL	NA	NA	NA	NA
WP_001531071.1\|600700_601864_-\|integrase	site-specific integrase	A0A0M4R586	Salmonella_phage	1.9e-218	96.1
WP_157747414.1\|602093_602234_-	hypothetical protein	A0A0M4QWX3	Salmonella_phage	9.4e-16	95.7
WP_001060562.1\|602302_602980_-	DUF551 domain-containing protein	A0A0N7KZV3	Escherichia_phage	6.9e-19	29.6
WP_001531074.1\|602976_603219_-	DUF551 domain-containing protein	NA	NA	NA	NA
WP_000206020.1\|603327_603600_-	hypothetical protein	NA	NA	NA	NA
WP_000661511.1\|603637_603937_-	hypothetical protein	NA	NA	NA	NA
WP_000230225.1\|603940_604384_-	ead/Ea22-like family protein	I6RSM9	Salmonella_phage	2.6e-35	96.2
WP_001531070.1\|604549_605047_-	hypothetical protein	A0A0N6WGF1	Salmonella_phage	2.6e-76	86.7
WP_012512998.1\|605043_605208_-	DUF2737 family protein	A0A2I6PID4	Escherichia_phage	3.0e-21	96.3
WP_001111318.1\|605218_605512_-	DUF2856 family protein	K7P7E6	Enterobacteria_phage	3.2e-50	99.0
WP_000951330.1\|605535_605919_-	hypothetical protein	K7P6P8	Enterobacteria_phage	2.1e-65	97.6
WP_000031362.1\|605918_606524_-	ERF family protein	Q9MCQ9	Enterobacteria_phage	7.8e-107	98.5
WP_001243355.1\|606780_606933_-	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	4.7e-21	100.0
WP_000638547.1\|606917_607049_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	A5VWA4	Enterobacteria_phage	1.4e-16	100.0
WP_000005780.1\|607073_608042_-	hypothetical protein	K7P7J7	Enterobacteria_phage	2.2e-55	99.4
WP_000167595.1\|608224_608695_-	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	3.7e-88	100.0
WP_000216029.1\|608985_609288_-	hypothetical protein	Q76H58	Enterobacteria_phage	4.8e-49	98.0
WP_023138238.1\|609672_610305_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	2.8e-30	43.0
WP_000447947.1\|610405_610621_+	helix-turn-helix transcriptional regulator	Q716D6	Shigella_phage	1.1e-18	69.0
WP_001103492.1\|610731_611013_+	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
WP_001125982.1\|611047_611194_+	DUF2740 family protein	A0A0M4S617	Salmonella_phage	1.9e-19	100.0
WP_000067066.1\|611186_612047_+	replication protein	K7PL20	Enterobacteria_phage	1.1e-159	99.7
WP_024132273.1\|612154_614035_+	toprim domain-containing protein	Q5G8S8	Enterobacteria_phage	0.0e+00	97.9
WP_001064628.1\|614035_614314_+	hypothetical protein	C6ZR54	Salmonella_phage	5.2e-50	100.0
WP_000736922.1\|614387_614825_+	recombination protein NinB	C6ZR55	Salmonella_phage	7.7e-80	100.0
WP_000679702.1\|614821_614995_+	hypothetical protein	C6ZR56	Salmonella_phage	5.2e-32	100.0
WP_000113764.1\|614961_615138_+	NinE family protein	I6RSI9	Salmonella_phage	4.3e-26	96.6
WP_000566853.1\|615134_615311_+	protein ninF	A0A0M4S6T3	Salmonella_phage	1.0e-27	96.6
WP_001014910.1\|615566_615962_+	RusA family crossover junction endodeoxyribonuclease	A0A0M4REJ2	Salmonella_phage	1.4e-69	96.9
WP_000149926.1\|615958_616162_+	phage NinH family protein	Q5G8R8	Enterobacteria_phage	7.2e-33	100.0
WP_000219138.1\|616142_616322_+	hypothetical protein	A0A1V0E5I7	Salmonella_phage	7.1e-24	100.0
WP_001235449.1\|616318_616942_+	antitermination protein	C6ZR62	Salmonella_phage	3.4e-113	98.6
WP_000947857.1\|617228_617747_+	HNH endonuclease	A0A1V0E5R7	Salmonella_phage	5.9e-95	100.0
WP_000781414.1\|617970_618243_+	hypothetical protein	A0A1V0E5R8	Salmonella_phage	1.1e-41	100.0
WP_001089360.1\|618242_618740_+	lysozyme	A5LH83	Enterobacteria_phage	1.5e-87	93.3
WP_023253534.1\|618828_619296_+\|lysis	lysis protein	Q76H63	Enterobacteria_phage	1.9e-68	88.4
WP_001530409.1\|619505_620003_+	KilA-N domain-containing protein	A0A1V0E5R9	Salmonella_phage	1.4e-93	100.0
WP_001283924.1\|619999_620257_+	hypothetical protein	A0A1V0E5Q1	Salmonella_phage	3.8e-39	100.0
WP_000147264.1\|620651_621083_+\|terminase	terminase small subunit	A0A1V0E5Q4	Salmonella_phage	7.6e-72	100.0
WP_000445802.1\|621066_622386_+\|terminase	terminase	H6WRS9	Salmonella_phage	1.9e-262	100.0
WP_000130171.1\|622518_623871_+	DUF1073 domain-containing protein	H6WRT0	Salmonella_phage	1.3e-258	99.6
WP_000162583.1\|623824_624784_+\|capsid	minor capsid protein	H6WRT1	Salmonella_phage	3.9e-177	99.4
WP_000868160.1\|624799_626062_+	hypothetical protein	H6WRT2	Salmonella_phage	5.8e-237	99.3
WP_000092738.1\|626074_626524_+	hypothetical protein	I6S1Q2	Salmonella_phage	1.3e-77	99.3
WP_000273927.1\|626541_627618_+	hypothetical protein	I6RSK5	Salmonella_phage	9.0e-207	99.7
WP_001151799.1\|627627_627807_+	hypothetical protein	H6WRT5	Salmonella_phage	6.8e-27	100.0
WP_000633370.1\|627858_628260_+	hypothetical protein	Q5G8X8	Enterobacteria_phage	1.4e-72	100.0
WP_000312329.1\|628259_628439_+	DUF551 domain-containing protein	Q5G8X7	Enterobacteria_phage	8.6e-30	100.0
WP_001289333.1\|628431_628794_+	hypothetical protein	H6WRT8	Salmonella_phage	3.3e-68	100.0
WP_001144359.1\|628881_629319_+	hypothetical protein	H6WRT9	Salmonella_phage	2.1e-77	100.0
WP_000198516.1\|629315_629702_+	hypothetical protein	H6WRU0	Salmonella_phage	3.5e-68	100.0
WP_000896574.1\|629719_630460_+	immunoglobulin domain-containing protein	H6WRU1	Salmonella_phage	3.5e-133	100.0
WP_000644471.1\|630504_631158_+	hypothetical protein	H6WRU2	Salmonella_phage	1.0e-120	100.0
WP_000065269.1\|631379_632108_+	KilA-N domain-containing protein	H6WRU3	Salmonella_phage	3.1e-142	100.0
WP_001260076.1\|632129_632501_-	hypothetical protein	H6WRU4	Salmonella_phage	1.9e-63	99.2
WP_023230837.1\|632421_632679_+	hypothetical protein	H6WRU5	Salmonella_phage	1.0e-39	98.8
WP_000049860.1\|632699_633026_-	Arc family DNA-binding protein	H6WRU6	Salmonella_phage	3.3e-51	100.0
WP_001154344.1\|633136_633310_+	hypothetical protein	H6WRU7	Salmonella_phage	5.8e-23	100.0
WP_001028069.1\|633383_634022_+	hypothetical protein	H6WRU8	Salmonella_phage	2.1e-118	100.0
WP_001187765.1\|634101_634890_+	ORF6N domain-containing protein	H6WRU9	Salmonella_phage	5.2e-127	100.0
WP_023167675.1\|635296_635671_+	hypothetical protein	H6WRV1	Salmonella_phage	4.1e-66	99.2
WP_024132274.1\|635744_636041_+	hypothetical protein	A0A1V0E5P0	Salmonella_phage	8.6e-43	100.0
WP_000758150.1\|636123_636477_+	hypothetical protein	A0A1V0E5P9	Salmonella_phage	9.3e-60	99.1
WP_000184444.1\|636598_637453_-	KilA-N domain-containing protein	I6R977	Salmonella_phage	5.2e-56	46.0
WP_000006601.1\|637762_638176_+	hypothetical protein	NA	NA	NA	NA
WP_000721957.1\|638190_638487_+	hypothetical protein	NA	NA	NA	NA
WP_000193226.1\|638551_641722_+	tape measure protein	Q5G8W8	Enterobacteria_phage	9.9e-302	69.0
WP_000730009.1\|641746_641986_-	hypothetical protein	NA	NA	NA	NA
WP_001115294.1\|642071_642419_+\|tail	phage tail protein	A0A1V0E5N3	Salmonella_phage	2.4e-60	93.9
WP_001204732.1\|642454_643159_+\|tail	phage minor tail protein L	A0A1V0E5N2	Salmonella_phage	2.3e-134	97.0
WP_001156981.1\|643158_643878_+	C40 family peptidase	H6WRW2	Salmonella_phage	9.8e-133	99.5
WP_016062821.1\|643820_644348_+\|tail	tail assembly protein	H6WRW3	Salmonella_phage	1.9e-72	100.0
WP_000094329.1\|644357_647537_+\|tail	phage tail protein	H6WRW4	Salmonella_phage	0.0e+00	99.9
WP_001113925.1\|647545_648505_+	hypothetical protein	H6WRW5	Salmonella_phage	9.6e-184	100.0
WP_001272645.1\|648515_649652_+\|tail	tail fiber domain-containing protein	H6WRW6	Salmonella_phage	7.1e-210	99.7
WP_000778544.1\|650259_651447_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.3e-121	53.4
WP_000884168.1\|651787_652093_+	hypothetical protein	NA	NA	NA	NA
WP_130045058.1\|652089_652524_+	hypothetical protein	NA	NA	NA	NA
WP_000083329.1\|652743_652941_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	5.1e-07	46.3
WP_001037933.1\|653042_653639_+	hypothetical protein	A0A1X9SFL9	Acinetobacter_phage	4.6e-19	47.7
WP_000240511.1\|653718_654051_-	hypothetical protein	NA	NA	NA	NA
WP_000752430.1\|654244_654532_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_001293161.1\|654524_654686_+	hypothetical protein	NA	NA	NA	NA
WP_001530407.1\|654678_655077_+	DNA primase	A0A286SGR4	Klebsiella_phage	2.0e-10	54.2
WP_001246435.1\|655069_655240_+	hypothetical protein	NA	NA	NA	NA
WP_000360563.1\|655232_655460_+	hypothetical protein	NA	NA	NA	NA
WP_001530385.1\|655440_655761_+	hypothetical protein	A0A0P0ZDC0	Stx2-converting_phage	3.5e-21	73.1
WP_001240985.1\|655771_656566_+	ORF6N domain-containing protein	F1C5A3	Cronobacter_phage	1.2e-46	66.0
WP_000065153.1\|656562_656868_+	hypothetical protein	NA	NA	NA	NA
WP_001530372.1\|656957_657341_+	hypothetical protein	NA	NA	NA	NA
WP_001246607.1\|657333_657981_+	hypothetical protein	A0A1B5FPB4	Escherichia_phage	9.1e-29	42.1
WP_000710141.1\|657990_660132_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.3e-193	55.7
WP_000123960.1\|660128_660524_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_001031186.1\|660567_661482_+	hypothetical protein	F1C596	Cronobacter_phage	1.8e-59	47.9
WP_001530426.1\|661575_662379_+	antitermination protein	F1C595	Cronobacter_phage	6.7e-106	72.2
WP_001527046.1\|664202_664547_+\|holin	phage holin, lambda family	Q8HA87	Salmonella_phage	5.3e-44	100.0
WP_001005903.1\|664549_665164_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.1e-108	94.1
WP_000173714.1\|665160_665697_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	3.6e-07	47.9
WP_001100259.1\|665693_665945_+	hypothetical protein	NA	NA	NA	NA
WP_000051068.1\|666020_666554_+	hypothetical protein	NA	NA	NA	NA
WP_157747412.1\|666965_667157_+	hypothetical protein	NA	NA	NA	NA
WP_001280369.1\|667211_667709_+	DUF1441 family protein	A5LH26	Enterobacteria_phage	2.8e-38	55.1
WP_001260047.1\|667695_669810_+\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	1.2e-295	70.3
WP_000196423.1\|669806_670013_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-07	48.6
WP_001009893.1\|670009_671545_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	7.4e-178	63.4
WP_000718456.1\|671507_673577_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	7.9e-276	71.9
WP_001107910.1\|673665_673989_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	2.7e-29	64.2
WP_000002965.1\|673981_674257_+	hypothetical protein	K7PH43	Enterobacteria_phage	1.3e-13	42.9
WP_000053600.1\|674260_674845_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.1e-76	78.6
WP_001032974.1\|674841_675243_+\|tail	tail protein	A0A291AWY2	Escherichia_phage	1.1e-51	69.2
WP_000971954.1\|675250_675997_+	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000479607.1\|676047_676443_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_010989052.1\|676439_676778_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000372064.1\|676749_679845_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.7e-277	61.4
WP_000447369.1\|679847_680177_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_001152691.1\|680186_680885_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	2.7e-103	75.9
WP_000662741.1\|680891_681629_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	6.8e-129	85.0
WP_000246124.1\|681526_682174_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.3e-90	78.1
WP_001530402.1\|682235_685598_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	80.1
WP_000178849.1\|685636_685879_+	hypothetical protein	NA	NA	NA	NA
WP_001144667.1\|685932_688611_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1B0VFW4	Salmonella_phage	1.9e-157	68.3
WP_000421115.1\|688625_689144_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	2.5e-45	51.4
WP_001674128.1\|689715_689871_-	hypothetical protein	E5G6P4	Salmonella_phage	2.2e-05	75.0
WP_000758585.1\|689968_690739_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_000334630.1\|691457_692129_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	9.6e-82	61.3
WP_000434707.1\|692428_693127_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.4e-88	67.7
WP_023237793.1\|693212_693533_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	3.2e-19	45.7
WP_000477689.1\|693577_694867_+	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	3.5e-165	70.2
WP_000065760.1\|694879_695305_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	5.0e-52	72.1
WP_000077927.1\|695658_695892_-	DinI family protein	K7P797	Enterobacteria_phage	4.9e-17	63.0
WP_000143759.1\|697904_699362_-	glucosyltransferase domain-containing protein	A0A192Y7W8	Salmonella_phage	1.9e-154	59.4
696436:696456	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1288080 : 1296360

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000444506.1\|1288080_1289331_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	2.0e-19	90.7
WP_000917280.1\|1289776_1290901_+	type III secretion system effector SopF	NA	NA	NA	NA
WP_000275700.1\|1291947_1292361_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	4.2e-19	38.6
WP_000733630.1\|1292377_1293106_+	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	1.6e-61	52.5
WP_000158843.1\|1293298_1293841_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001277616.1\|1293988_1294366_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_001529135.1\|1294438_1295248_-	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_001036548.1\|1295745_1295910_+	hypothetical protein	NA	NA	NA	NA
WP_000497451.1\|1296120_1296360_-	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6

DBSCAN-SWA_3

2051495 : 2058755

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001157312.1\|2051495_2052926_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.5e-105	57.5
WP_000377042.1\|2052999_2053695_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_000107430.1\|2053786_2054086_-	membrane protein	NA	NA	NA	NA
WP_001080663.1\|2054735_2055938_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	4.4e-109	56.3
WP_024131109.1\|2056198_2056387_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|2056397_2056610_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457657.1\|2057064_2058333_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	2.4e-227	91.9
WP_000394197.1\|2058335_2058755_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5

DBSCAN-SWA_4

2124201 : 2163363

Salmonella_phage(84.62%)

integrase,head,portal,capsid,terminase,protease,tail,plate,holin

attL 2136618:2136632|attR 2171952:2171966

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000798891.1\|2124201_2124468_+	hypothetical protein	A0A0M3ULK3	Salmonella_phage	4.0e-39	89.8
WP_000343069.1\|2124483_2124675_-	DUF2767 family protein	A0A0M4R5C3	Salmonella_phage	5.8e-16	97.7
WP_001530989.1\|2124783_2125218_-	hypothetical protein	NA	NA	NA	NA
WP_000532385.1\|2125691_2126066_-	DUF1353 domain-containing protein	A0A0A8J9K3	Ralstonia_phage	9.0e-13	35.0
WP_001259328.1\|2126117_2127251_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	7.2e-37	33.0
WP_000267959.1\|2127326_2127500_-	hypothetical protein	F1BUK1	Cronobacter_phage	1.7e-11	65.1
WP_086011185.1\|2127489_2128095_-\|tail	tail fiber assembly protein	Q8HAB3	Salmonella_phage	1.7e-101	94.1
WP_000554743.1\|2128064_2129609_-	hypothetical protein	Q8HAB4	Salmonella_phage	2.1e-257	91.0
WP_001207832.1\|2129595_2130183_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_000785578.1\|2130185_2131265_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.9e-205	100.0
WP_000605051.1\|2131257_2131671_-	phage GP46 family protein	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
WP_001273648.1\|2131675_2132209_-\|plate	phage baseplate assembly protein	A0A192Y8K5	Salmonella_phage	8.4e-97	100.0
WP_001066630.1\|2132208_2133267_-\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	1.3e-202	100.0
WP_000863827.1\|2133263_2134604_-	DNA circularization N-terminal domain-containing protein	A0A192Y5U9	Salmonella_phage	5.2e-252	100.0
WP_000785390.1\|2134637_2136566_-\|tail	phage tail tape measure protein	A0A192Y6D8	Salmonella_phage	0.0e+00	100.0
2136618:2136632	attL	NA	NA	NA	NA
WP_022742746.1\|2136650_2136944_-	hypothetical protein	A0A192Y6C5	Salmonella_phage	2.6e-47	100.0
WP_000515952.1\|2136973_2137330_-\|tail	phage tail tube protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_001007996.1\|2137329_2138826_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A192Y7L1	Salmonella_phage	2.1e-278	100.0
WP_000497740.1\|2138815_2138980_-	DUF2635 domain-containing protein	A0A1C9II04	Salmonella_phage	1.3e-24	100.0
WP_000779216.1\|2138983_2139544_-	hypothetical protein	A0A192Y5U4	Salmonella_phage	8.0e-106	100.0
WP_001135699.1\|2139540_2140053_-	hypothetical protein	A0A192Y6D2	Salmonella_phage	3.5e-92	100.0
WP_000702410.1\|2140024_2140429_-\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	3.2e-72	100.0
WP_000927378.1\|2140425_2140749_-\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
WP_000601352.1\|2140751_2140952_-	hypothetical protein	A0A192Y7K5	Salmonella_phage	1.8e-28	100.0
WP_000257526.1\|2141002_2142208_-\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	7.0e-224	100.0
WP_001193639.1\|2142222_2142873_-\|head,protease	HK97 family phage prohead protease	Q8HAD3	Salmonella_phage	1.5e-119	100.0
WP_000466263.1\|2142850_2144092_-\|portal	phage portal protein	Q8HAD4	Salmonella_phage	6.5e-241	99.0
WP_000605609.1\|2144091_2144274_-	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
WP_000088175.1\|2144285_2146019_-\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	98.3
WP_000929171.1\|2146015_2146510_-\|terminase	phage terminase small subunit P27 family	A0A1B3B2F4	Salmonella_phage	1.7e-88	100.0
WP_001135098.1\|2146635_2146986_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	9.8e-62	94.8
WP_001379492.1\|2147036_2147369_-	hypothetical protein	A0A192Y5Y1	Salmonella_phage	2.8e-58	100.0
WP_001530346.1\|2147831_2148224_-	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	2.8e-65	100.0
WP_001005893.1\|2148220_2148835_-	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	5.0e-109	97.1
WP_162264800.1\|2148837_2149179_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	9.6e-46	80.4
WP_001097244.1\|2149379_2150069_-	antitermination protein	I6PDF8	Cronobacter_phage	2.0e-58	49.8
WP_000801757.1\|2150065_2150206_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001096550.1\|2150202_2150814_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
WP_000929805.1\|2151022_2151625_-	DUF1367 family protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
WP_000807548.1\|2151707_2151929_-	hypothetical protein	NA	NA	NA	NA
WP_001217665.1\|2152040_2152274_-	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
WP_010989003.1\|2152565_2152856_-	hypothetical protein	NA	NA	NA	NA
WP_000065108.1\|2152933_2153245_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
WP_000113629.1\|2153241_2153589_-	DUF977 family protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
WP_000800009.1\|2153599_2154349_-	ATP-binding protein	S4TNF5	Salmonella_phage	1.4e-137	99.2
WP_000062941.1\|2154351_2155335_-	replication protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_001574095.1\|2155419_2155794_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000370145.1\|2155759_2155999_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001038966.1\|2156118_2156529_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_010989055.1\|2156578_2156839_+	hypothetical protein	NA	NA	NA	NA
WP_000917562.1\|2156831_2156990_+	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
WP_001539619.1\|2157011_2157362_+	hypothetical protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
WP_000017125.1\|2157488_2160416_+	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	99.3
WP_071892913.1\|2160378_2161536_+	recombinase RecT	S4TTE8	Salmonella_phage	7.9e-217	99.7
WP_001237031.1\|2161578_2161818_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001007943.1\|2162181_2163363_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	1.3e-227	99.5
2171952:2171966	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2192467 : 2202974

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126349.1\|2192467_2193781_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565904.1\|2193807_2194887_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.3e-16	24.5
WP_000648783.1\|2194891_2195665_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018225.1\|2195680_2196655_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973712.1\|2196660_2197212_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.9e-52	58.0
WP_024132299.1\|2197212_2198091_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	3.5e-108	65.2
WP_001023663.1\|2198138_2199038_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_000697850.1\|2199037_2200123_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.4e-103	53.9
WP_000981469.1\|2200499_2201393_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111835.1\|2201570_2202974_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5

DBSCAN-SWA_6

2270203 : 2279375

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195345.1\|2270203_2272237_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703136.1\|2272478_2272937_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
WP_001221798.1\|2273108_2273639_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2273695_2274163_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2274209_2274929_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272850.1\|2274925_2276611_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_001240418.1\|2276833_2277565_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2277624_2277732_+	protein YohO	NA	NA	NA	NA
WP_000824858.1\|2277712_2278444_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2278427_2279375_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

DBSCAN-SWA_7

4314689 : 4358561

Salmonella_phage(50.0%)

integrase,portal,head,capsid,terminase,tRNA,protease,tail,plate,holin

attL 4353007:4353022|attR 4356413:4356428

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000956555.1\|4314689_4315223_+	hypothetical protein	K7PKJ4	Enterobacteria_phage	1.3e-89	88.7
WP_000678277.1\|4315416_4315590_+	hypothetical protein	K7PJQ2	Enterobacteria_phage	2.9e-22	98.2
WP_001093920.1\|4315652_4315925_-	pyocin activator PrtN family protein	S5MQM5	Escherichia_phage	2.2e-40	94.3
WP_000156435.1\|4316060_4316429_-	hypothetical protein	G9L6B4	Escherichia_phage	3.6e-46	80.2
WP_000267994.1\|4316425_4316719_-	hypothetical protein	A0A1V0E5L2	Salmonella_phage	9.4e-50	97.9
WP_000850456.1\|4316760_4317063_-	hypothetical protein	A0A1P8DTP0	Salmonella_phage	4.5e-31	70.5
WP_001017878.1\|4317066_4317768_-	ead/Ea22-like family protein	A0A0M5M1J9	Salmonella_phage	8.9e-46	97.9
WP_000008354.1\|4317838_4318378_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	6.5e-97	98.9
WP_000080411.1\|4318514_4319342_-	DUF2303 family protein	A0A192Y6E5	Salmonella_phage	1.6e-150	97.8
WP_000997190.1\|4319399_4319771_-	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
WP_000078504.1\|4320342_4320594_+	hypothetical protein	NA	NA	NA	NA
WP_001067434.1\|4320669_4320861_-	hypothetical protein	A0A1C9II97	Salmonella_phage	1.2e-13	73.3
WP_000450735.1\|4321044_4321671_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	5.5e-47	48.8
WP_000205494.1\|4321768_4321969_+	cell division protein	NA	NA	NA	NA
WP_001434539.1\|4322006_4322558_+	hypothetical protein	S5FXP0	Shigella_phage	7.6e-101	98.9
WP_001250269.1\|4322733_4322913_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104967.1\|4322902_4323844_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.3e-153	100.0
WP_000066917.1\|4323938_4324592_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
WP_000210148.1\|4324588_4324915_+	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	1.0e-52	98.1
WP_000767130.1\|4324911_4325301_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
WP_001061375.1\|4325320_4326118_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	1.3e-149	99.2
WP_012513026.1\|4326125_4327115_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	8.9e-193	98.5
WP_001047097.1\|4327128_4327881_+	antitermination protein	A0A192Y5X6	Salmonella_phage	2.3e-140	96.4
WP_000508331.1\|4328060_4328279_+	hypothetical protein	NA	NA	NA	NA
WP_000658039.1\|4328559_4328748_+	hypothetical protein	NA	NA	NA	NA
WP_001294874.1\|4328837_4329227_+\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	1.8e-40	71.0
WP_000226307.1\|4329213_4329495_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_001075994.1\|4329494_4330109_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	2.2e-109	94.6
WP_001050814.1\|4330105_4330648_+	DUF2514 family protein	NA	NA	NA	NA
WP_001252724.1\|4330750_4331254_+	hypothetical protein	NA	NA	NA	NA
WP_001749169.1\|4331321_4331666_+	HNH endonuclease	K7P7P6	Enterobacteria_phage	4.4e-46	73.0
WP_000919034.1\|4331798_4332263_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.3e-48	62.1
WP_000229717.1\|4332216_4333959_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	3.1e-140	44.7
WP_000002706.1\|4333958_4335263_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	5.1e-220	86.9
WP_000039024.1\|4335276_4336125_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	4.4e-132	88.2
WP_000005720.1\|4336134_4337352_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	3.9e-198	88.4
WP_000691031.1\|4337395_4337665_+	hypothetical protein	K7PHI6	Enterobacteria_phage	3.0e-10	66.0
WP_000886224.1\|4337664_4337988_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	2.2e-31	57.4
WP_001255649.1\|4337999_4338413_+\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	1.3e-49	74.0
WP_001180259.1\|4338384_4338897_+	hypothetical protein	Q8HAC8	Salmonella_phage	1.4e-80	86.5
WP_001241332.1\|4338893_4339439_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	3.6e-87	84.7
WP_000497756.1\|4339460_4339625_+	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	2.2e-24	98.1
WP_001007994.1\|4339614_4341111_+\|tail	phage tail sheath subtilisin-like domain-containing protein	Q8HAC5	Salmonella_phage	3.0e-277	99.4
WP_000515952.1\|4341110_4341467_+\|tail	phage tail tube protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_000588852.1\|4341463_4341790_+\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_000785382.1\|4341874_4343800_+\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	97.6
WP_001033736.1\|4343816_4344266_+	hypothetical protein	NA	NA	NA	NA
WP_000863821.1\|4344325_4345666_+	DNA circularization N-terminal domain-containing protein	A0A192Y5U9	Salmonella_phage	1.7e-250	99.6
WP_001066631.1\|4345662_4346721_+	hypothetical protein	A0A192Y7L7	Salmonella_phage	6.6e-202	99.7
WP_001273648.1\|4346720_4347254_+\|plate	phage baseplate assembly protein	A0A192Y8K5	Salmonella_phage	8.4e-97	100.0
WP_000605051.1\|4347258_4347672_+	phage GP46 family protein	A0A192Y6D0	Salmonella_phage	3.1e-75	100.0
WP_000785578.1\|4347664_4348744_+\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.9e-205	100.0
WP_001207832.1\|4348746_4349334_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_000554741.1\|4349320_4350415_+	hypothetical protein	A0A1C9II52	Salmonella_phage	7.9e-57	99.1
WP_000006335.1\|4350421_4350829_+\|tail	tail fiber assembly protein	A0A1B0V844	Salmonella_phage	1.8e-59	84.2
WP_000161707.1\|4351025_4351748_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_000639149.1\|4352272_4352836_+	recombinase family protein	K7PJT4	Enterobacteria_phage	3.4e-80	79.1
WP_001217553.1\|4352979_4353228_-	DinI-like family protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
4353007:4353022	attL	NA	NA	NA	NA
WP_000332264.1\|4353289_4354387_-\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	4.3e-212	100.0
WP_000543820.1\|4354475_4355513_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000891414.1\|4355680_4355923_+	envelope stress response protein PspG	NA	NA	NA	NA
WP_000235555.1\|4356097_4357081_-	quinone oxidoreductase	NA	NA	NA	NA
4356413:4356428	attR	NA	NA	NA	NA
WP_000918353.1\|4357145_4358561_+	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	7.0e-199	78.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011092

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_011094

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection