CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011204	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence	0 crisprs	cas14j	0	0	0	0
NC_011205	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853, complete sequence	2 crisprs	WYL,DinG,DEDDh,cas3,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	0	4	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011205_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011205_1

3121103-3121251

TypeI-E

I-E

Consensus_repeat	Method
CCGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

2 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NC_011205_1

>merge|NC_011205|1|3121103-3121251|PILER-CR
GTTTATCCCCGCTGACGCGGGGAACACTATTTATAAGCGTGTCATCTATGCAACCCAACCGGTTTATCCCCGCTGGCGCGGGGAACACGGATTTTTCTTGAACGTGATTTCGGGATACGCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011205|1|1|3121103-3121251|PILER-CR
GTTTATCCCCGCTGACGCGGGGAACACTAT	TTATAAGCGTGTCATCTATGCAACCCAACCG
GTTTATCCCCGCTGGCGCGGGGAACACGGA	TTTTTCTTGAACGTGATTTCGGGATACGCCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011205.1\|WP_001221533.1\|3112967_3113729_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NC_011205.1\|WP_000372384.1\|3118880_3119789_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NC_011205.1\|WP_001290672.1\|3132127_3133840_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_011205.1\|WP_000490481.1\|3120039_3121086_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NC_011205.1\|WP_000368579.1\|3125575_3127132_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_011205.1\|WP_000117944.1\|3125018_3125579_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_011205.1\|WP_001092256.1\|3117431_3118871_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NC_011205.1\|WP_001518648.1\|3121347_3121641_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NC_011205.1\|WP_001145541.1\|3130250_3131204_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_011205.1\|WP_000039870.1\|3131291_3132026_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_011205.1\|WP_001173663.1\|3116839_3117445_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NC_011205.1\|WP_001219253.1\|3114755_3115235_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NC_011205.1\|WP_000085105.1\|3123189_3123936_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_011205.1\|WP_001537530.1\|3116465_3116789_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NC_011205.1\|WP_000144833.1\|3121640_3122561_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_011205.1\|WP_000281487.1\|3122557_3123208_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NC_011205.1\|WP_000134246.1\|3113709_3114759_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NC_011205.1\|WP_000517480.1\|3115963_3116275_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NC_011205.1\|WP_000206413.1\|3123946_3125005_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_011205.1\|WP_000741653.1\|3115234_3115945_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670

Protein	Function_ID	Function_description	E-value
NC_011205.1\|WP_001221533.1\|3112967_3113729_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.2699e-146
NC_011205.1\|WP_000372384.1\|3118880_3119789_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NC_011205.1\|WP_001290672.1\|3132127_3133840_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_011205.1\|WP_000490481.1\|3120039_3121086_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NC_011205.1\|WP_000368579.1\|3125575_3127132_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_011205.1\|WP_000117944.1\|3125018_3125579_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	9.5399e-34
NC_011205.1\|WP_001092256.1\|3117431_3118871_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NC_011205.1\|WP_001518648.1\|3121347_3121641_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NC_011205.1\|WP_001145541.1\|3130250_3131204_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_011205.1\|WP_000039870.1\|3131291_3132026_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NC_011205.1\|WP_001173663.1\|3116839_3117445_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NC_011205.1\|WP_001219253.1\|3114755_3115235_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.84083e-103
NC_011205.1\|WP_000085105.1\|3123189_3123936_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.80035e-48
NC_011205.1\|WP_001537530.1\|3116465_3116789_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NC_011205.1\|WP_000144833.1\|3121640_3122561_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.64033e-157
NC_011205.1\|WP_000281487.1\|3122557_3123208_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	4.46702e-75
NC_011205.1\|WP_000134246.1\|3113709_3114759_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NC_011205.1\|WP_000517480.1\|3115963_3116275_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NC_011205.1\|WP_000206413.1\|3123946_3125005_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.52672e-140
NC_011205.1\|WP_000741653.1\|3115234_3115945_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.09575e-119

>NC_011205.1|WP_000490481.1|3120039_3121086_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NC_011205.1|WP_000372384.1|3118880_3119789_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NC_011205.1|WP_001092256.1|3117431_3118871_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NC_011205.1|WP_001173663.1|3116839_3117445_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NC_011205.1|WP_001537530.1|3116465_3116789_-|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NC_011205.1|WP_000517480.1|3115963_3116275_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NC_011205.1|WP_000741653.1|3115234_3115945_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLTISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NC_011205.1|WP_001219253.1|3114755_3115235_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRISYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NC_011205.1|WP_000134246.1|3113709_3114759_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NC_011205.1|WP_001221533.1|3112967_3113729_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPCPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NC_011205.1|WP_001518648.1|3121347_3121641_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NC_011205.1|WP_000144833.1|3121640_3122561_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NC_011205.1|WP_000281487.1|3122557_3123208_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIRREKSRQMIQFSSVDYTGVLVLNDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NC_011205.1|WP_000085105.1|3123189_3123936_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYSLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NC_011205.1|WP_000206413.1|3123946_3125005_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVEKIANCFGKVKAEKKPKDELTNAETEQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALRENMNAVYAQETAFKDFNVMNQQGSMKDVLDFICA
>NC_011205.1|WP_000117944.1|3125018_3125579_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NC_011205.1|WP_000368579.1|3125575_3127132_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NC_011205.1|WP_001145541.1|3130250_3131204_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_011205.1|WP_000039870.1|3131291_3132026_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_011205.1|WP_001290672.1|3132127_3133840_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE

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Crispr_ID: NC_011205_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011205_2

3137409-3137742

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

5 spacers

cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NC_011205_2

>merge|NC_011205|2|3137409-3137742|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACACGGCTACACGCAAAAATTCCAGTCGTTGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACACCCGATTAAGATCCGCAGTCTGCATCAGTAACTCGGTTTATCCCCGCTGGCGCGGGGAACACTGATTATTGACGACAACAGCACAGACCGGCAGCAGTTTATCCCCGCTGGCGCGGGGAACACTGATTATTGACGACAACAGCACAGACCGGCAGCAGTTTATCCCCGCTGGCGCGGGGAACACAATAATCGGCAATTTGTCCTGGACAGGCACGGCAGTTTATCCCCGCTGGCGCGGGGAACAC

>NC_011205|2|1|3137409-3137742|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	GGCTACACGCAAAAATTCCAGTCGTTGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGATTAAGATCCGCAGTCTGCATCAGTAACT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGATTATTGACGACAACAGCACAGACCGGCAG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	TGATTATTGACGACAACAGCACAGACCGGCAG
CAGTTTATCCCCGCTGGCGCGGGGAACAC	AATAATCGGCAATTTGTCCTGGACAGGCACGG
CAGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011205.1\|WP_001044459.1\|3146876_3147650_+\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NC_011205.1\|WP_000117944.1\|3125018_3125579_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_011205.1\|WP_000108313.1\|3136062_3136425_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NC_011205.1\|WP_000832393.1\|3148190_3148661_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NC_011205.1\|WP_000368579.1\|3125575_3127132_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NC_011205.1\|WP_000036735.1\|3138845_3140144_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NC_011205.1\|WP_000210930.1\|3133839_3135639_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NC_011205.1\|WP_000178270.1\|3147669_3148176_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NC_011205.1\|WP_000981798.1\|3144164_3146864_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NC_011205.1\|WP_000039870.1\|3131291_3132026_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NC_011205.1\|WP_001199961.1\|3138038_3138710_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NC_011205.1\|WP_000085105.1\|3123189_3123936_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NC_011205.1\|WP_000210451.1\|3142091_3142892_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NC_011205.1\|WP_000842512.1\|3143497_3144085_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NC_011205.1\|WP_001145541.1\|3130250_3131204_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NC_011205.1\|WP_000210863.1\|3140226_3141864_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NC_011205.1\|WP_001290672.1\|3132127_3133840_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NC_011205.1\|WP_001079646.1\|3148657_3149194_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NC_011205.1\|WP_000206413.1\|3123946_3125005_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NC_011205.1\|WP_001207998.1\|3136512_3137310_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158

Protein	Function_ID	Function_description	E-value
NC_011205.1\|WP_001044459.1\|3146876_3147650_+\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NC_011205.1\|WP_000117944.1\|3125018_3125579_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	9.5399e-34
NC_011205.1\|WP_000108313.1\|3136062_3136425_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NC_011205.1\|WP_000832393.1\|3148190_3148661_+\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	2.10162e-98
NC_011205.1\|WP_000368579.1\|3125575_3127132_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NC_011205.1\|WP_000036735.1\|3138845_3140144_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NC_011205.1\|WP_000210930.1\|3133839_3135639_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NC_011205.1\|WP_000178270.1\|3147669_3148176_+\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
NC_011205.1\|WP_000981798.1\|3144164_3146864_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NC_011205.1\|WP_000039870.1\|3131291_3132026_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.73232e-139
NC_011205.1\|WP_001199961.1\|3138038_3138710_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NC_011205.1\|WP_000085105.1\|3123189_3123936_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.80035e-48
NC_011205.1\|WP_000210451.1\|3142091_3142892_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NC_011205.1\|WP_000842512.1\|3143497_3144085_+\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NC_011205.1\|WP_001145541.1\|3130250_3131204_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NC_011205.1\|WP_000210863.1\|3140226_3141864_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NC_011205.1\|WP_001290672.1\|3132127_3133840_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NC_011205.1\|WP_001079646.1\|3148657_3149194_+\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	7.785e-121
NC_011205.1\|WP_000206413.1\|3123946_3125005_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.52672e-140
NC_011205.1\|WP_001207998.1\|3136512_3137310_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.00381e-102

>NC_011205.1|WP_001207998.1|3136512_3137310_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGKNFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NC_011205.1|WP_000108313.1|3136062_3136425_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NC_011205.1|WP_000210930.1|3133839_3135639_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGVVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NC_011205.1|WP_001290672.1|3132127_3133840_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NC_011205.1|WP_000039870.1|3131291_3132026_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NC_011205.1|WP_001145541.1|3130250_3131204_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NC_011205.1|WP_000368579.1|3125575_3127132_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAESPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPIWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIRGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFTNAKDARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NC_011205.1|WP_000117944.1|3125018_3125579_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHDELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NC_011205.1|WP_000206413.1|3123946_3125005_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVEKIANCFGKVKAEKKPKDELTNAETEQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITALRENMNAVYAQETAFKDFNVMNQQGSMKDVLDFICA
>NC_011205.1|WP_000085105.1|3123189_3123936_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHDLPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYSLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLDGRAPDVLREAYRWYQDQFNTLKLTLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NC_011205.1|WP_001199961.1|3138038_3138710_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NC_011205.1|WP_000036735.1|3138845_3140144_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKNITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NC_011205.1|WP_000210863.1|3140226_3141864_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NC_011205.1|WP_000210451.1|3142091_3142892_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NC_011205.1|WP_000842512.1|3143497_3144085_+|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NC_011205.1|WP_000981798.1|3144164_3146864_+|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSLSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLSLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPSTFTPELLANALLLPCKMLEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NC_011205.1|WP_001044459.1|3146876_3147650_+|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NC_011205.1|WP_000178270.1|3147669_3148176_+|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NC_011205.1|WP_000832393.1|3148190_3148661_+|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGEMLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSAKALTTSVPELGIELQQNGTVFPPGTSLTINESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NC_011205.1|WP_001079646.1|3148657_3149194_+|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011205_1	1.2\|3121194\|31\|NC_011205\|PILER-CR	3121194-3121224	31	KM507819	Escherichia phage 121Q, complete genome	157385-157415	8	0.742
NC_011205_2	2.3\|3137560\|32\|NC_011205\|CRISPRCasFinder	3137560-3137591	32	MG592432	Vibrio phage 1.050.O._10N.286.48.A6, partial genome	21687-21718	8	0.75
NC_011205_2	2.3\|3137560\|32\|NC_011205\|CRISPRCasFinder	3137560-3137591	32	MG592431	Vibrio phage 1.049.O._10N.286.54.B5, partial genome	21426-21457	8	0.75
NC_011205_2	2.4\|3137621\|32\|NC_011205\|CRISPRCasFinder	3137621-3137652	32	MG592432	Vibrio phage 1.050.O._10N.286.48.A6, partial genome	21687-21718	8	0.75
NC_011205_2	2.4\|3137621\|32\|NC_011205\|CRISPRCasFinder	3137621-3137652	32	MG592431	Vibrio phage 1.049.O._10N.286.54.B5, partial genome	21426-21457	8	0.75
NC_011205_1	1.1\|3121133\|31\|NC_011205\|PILER-CR	3121133-3121163	31	NZ_MG266000	Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence	5501-5531	9	0.71
NC_011205_1	1.2\|3121194\|31\|NC_011205\|PILER-CR	3121194-3121224	31	NC_028822	Escherichia phage P483, complete genome	30080-30110	9	0.71
NC_011205_2	2.3\|3137560\|32\|NC_011205\|CRISPRCasFinder	3137560-3137591	32	NC_047790	Pseudoalteromonas phage C5a, complete genome	34441-34472	9	0.719
NC_011205_2	2.4\|3137621\|32\|NC_011205\|CRISPRCasFinder	3137621-3137652	32	NC_047790	Pseudoalteromonas phage C5a, complete genome	34441-34472	9	0.719

1. spacer 1.2|3121194|31|NC_011205|PILER-CR matches to KM507819 (Escherichia phage 121Q, complete genome) position: , mismatch: 8, identity: 0.742

ggatttttcttgaacgtgatttcgggatacg	CRISPR spacer
ggttttttcttgaacttgatttctcagtgca	Protospacer
** ************ *******  ..*.*.

2. spacer 2.3|3137560|32|NC_011205|CRISPRCasFinder matches to MG592432 (Vibrio phage 1.050.O._10N.286.48.A6, partial genome) position: , mismatch: 8, identity: 0.75

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
ttataattgactacaacagcacagagcagatt	Protospacer
* ** ****** ************* *.*

3. spacer 2.3|3137560|32|NC_011205|CRISPRCasFinder matches to MG592431 (Vibrio phage 1.049.O._10N.286.54.B5, partial genome) position: , mismatch: 8, identity: 0.75

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
ttataattgactacaacagcacagagcagatt	Protospacer
* ** ****** ************* *.*

4. spacer 2.4|3137621|32|NC_011205|CRISPRCasFinder matches to MG592432 (Vibrio phage 1.050.O._10N.286.48.A6, partial genome) position: , mismatch: 8, identity: 0.75

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
ttataattgactacaacagcacagagcagatt	Protospacer
* ** ****** ************* *.*

5. spacer 2.4|3137621|32|NC_011205|CRISPRCasFinder matches to MG592431 (Vibrio phage 1.049.O._10N.286.54.B5, partial genome) position: , mismatch: 8, identity: 0.75

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
ttataattgactacaacagcacagagcagatt	Protospacer
* ** ****** ************* *.*

6. spacer 1.1|3121133|31|NC_011205|PILER-CR matches to NZ_MG266000 (Clostridioides difficile strain 7032985 plasmid pCD-ISS1, complete sequence) position: , mismatch: 9, identity: 0.71

tatttataagcgtgtcatctatgcaacccaa	CRISPR spacer
aatttataatcatgtcatctatgccataatt	Protospacer
 ******** *.************ *.

7. spacer 1.2|3121194|31|NC_011205|PILER-CR matches to NC_028822 (Escherichia phage P483, complete genome) position: , mismatch: 9, identity: 0.71

ggatttttcttgaacgtgatttcgggatacg	CRISPR spacer
ggatttgtcttgaatgtgatttccatgatgg	Protospacer
****** *******.******** . .   *

8. spacer 2.3|3137560|32|NC_011205|CRISPRCasFinder matches to NC_047790 (Pseudoalteromonas phage C5a, complete genome) position: , mismatch: 9, identity: 0.719

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
agcttattgacgaaaacggcacagacaccaaa	Protospacer
 * ********** ***.********    *.

9. spacer 2.4|3137621|32|NC_011205|CRISPRCasFinder matches to NC_047790 (Pseudoalteromonas phage C5a, complete genome) position: , mismatch: 9, identity: 0.719

tgattattgacgacaacagcacagaccggcag	CRISPR spacer
agcttattgacgaaaacggcacagacaccaaa	Protospacer
 * ********** ***.********    *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

602552 : 662714

Salmonella_phage(66.15%)

holin,integrase,coat,terminase,tRNA,portal,protease,lysis

attL 617006:617046|attR 663008:663048

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000912377.1\|602552_603938_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.1e-44	35.5
WP_000819121.1\|603982_604807_-	DUF2145 domain-containing protein	NA	NA	NA	NA
WP_001038574.1\|604803_605241_-	STM0539 family protein	NA	NA	NA	NA
WP_001143571.1\|605233_605779_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190281.1\|605905_606118_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729165.1\|606119_606986_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	4.2e-29	36.5
WP_000681023.1\|607532_608090_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_001675699.1\|608740_609433_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_000754223.1\|609463_612076_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000708660.1\|612090_613098_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_000577507.1\|613107_613626_+	fimbria assembly protein	NA	NA	NA	NA
WP_000801273.1\|613671_614304_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
WP_001258110.1\|614907_615630_-	fimbria biosynthesis regulator FimY	NA	NA	NA	NA
WP_000944154.1\|616120_616717_-	fimbria biosynthesis transcriptional regulator FimW	NA	NA	NA	NA
617006:617046	attL	NA	NA	NA	NA
WP_001573970.1\|617063_618227_-\|integrase	site-specific integrase	A0A0M4R586	Salmonella_phage	1.0e-219	97.1
WP_001281201.1\|618456_618801_-	hypothetical protein	A0A0P0ZB93	Stx2-converting_phage	1.1e-57	97.4
WP_001447403.1\|618878_619178_-	hypothetical protein	G9L655	Escherichia_phage	7.1e-53	99.0
WP_000002089.1\|619271_619553_-	hypothetical protein	A0A0F6R7P5	Escherichia_coli_O157_typing_phage	5.9e-49	97.8
WP_000208077.1\|619545_620628_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	6.5e-80	75.2
WP_000267992.1\|620624_620918_-	hypothetical protein	A0A1V0E5L2	Salmonella_phage	4.2e-50	99.0
WP_000665849.1\|621302_621884_-	hypothetical protein	A0A0N6WGF1	Salmonella_phage	5.2e-68	71.5
WP_001214770.1\|621880_622051_-	DUF2737 family protein	I6S642	Salmonella_phage	6.1e-25	100.0
WP_001111323.1\|622061_622355_-	DUF2856 family protein	A0A1V0E5L7	Salmonella_phage	5.5e-50	100.0
WP_001016182.1\|622370_622919_-	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	2.1e-106	100.0
WP_000168282.1\|622927_623434_-	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	3.8e-91	98.8
WP_000365270.1\|623434_624142_-	recombinase	E7C9Q0	Salmonella_phage	9.7e-125	89.8
WP_000361564.1\|624335_624449_-	host cell division inhibitory peptide Kil	C6ZR39	Salmonella_phage	7.8e-13	100.0
WP_001200016.1\|624441_624582_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	2.0e-18	84.8
WP_001751411.1\|624905_625205_-	hypothetical protein	A0A1R3Y5U4	Salmonella_virus	3.3e-50	99.0
WP_000246164.1\|625244_625445_-	antirestriction Ral family protein	A0A1R3Y5S4	Salmonella_virus	1.0e-31	100.0
WP_000216172.1\|625523_625856_-	hypothetical protein	A0A1R3Y5R1	Salmonella_virus	2.2e-55	100.0
WP_000786969.1\|626219_626429_+	fumarate hydratase FumD	I6R0R9	Salmonella_phage	5.5e-28	91.3
WP_000248006.1\|626464_627388_-	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	1.5e-181	100.0
WP_000712403.1\|627476_628166_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-126	100.0
WP_000182204.1\|628276_628492_+	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.3e-32	100.0
WP_001103492.1\|628602_628884_+	hypothetical protein	Q76H54	Enterobacteria_phage	4.3e-44	100.0
WP_001125981.1\|628918_629065_+	DUF2740 family protein	A0A075B8K7	Enterobacteria_phage	1.5e-19	100.0
WP_000067074.1\|629057_629891_+	replication protein	A0A1R3Y5R9	Salmonella_virus	3.8e-152	100.0
WP_001248409.1\|629887_631264_+	AAA family ATPase	A0A192Y673	Salmonella_phage	4.8e-253	99.3
WP_000736920.1\|631337_631778_+	recombination protein NinB	K7PKW7	Enterobacterial_phage	2.9e-79	98.6
WP_001573980.1\|631774_632647_+	phosphoadenosine phosphosulfate reductase family protein	I6R0S6	Salmonella_phage	6.1e-169	93.4
WP_000679699.1\|632643_632817_+	hypothetical protein	C6ZR56	Salmonella_phage	7.0e-29	93.0
WP_000113760.1\|632783_632966_+	NinE family protein	Q716C5	Shigella_phage	1.8e-27	96.7
WP_000566852.1\|632962_633139_+	protein ninF	A0A0M4S6T3	Salmonella_phage	1.8e-27	96.6
WP_001008211.1\|633394_633790_+	RusA family crossover junction endodeoxyribonuclease	A0A0M4REJ2	Salmonella_phage	2.9e-70	96.9
WP_000176947.1\|633786_633990_+	phage NinH family protein	A0A075B8J4	Enterobacteria_phage	5.7e-30	94.0
WP_000027545.1\|634059_634548_+	DUF1133 family protein	I6S672	Salmonella_phage	3.0e-77	87.0
WP_000738703.1\|634927_635254_+\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
WP_001167374.1\|635237_635675_+	lysozyme	Q5G8R3	Enterobacteria_phage	6.3e-74	97.9
WP_000979454.1\|635671_636142_+\|lysis	lysis protein	H6WRZ5	Salmonella_phage	1.2e-62	87.2
WP_000877030.1\|636354_636885_+	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	4.0e-91	96.6
WP_000807788.1\|637143_637386_+	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
WP_001140560.1\|637389_637779_+	hypothetical protein	C6ZR72	Salmonella_phage	1.5e-74	99.2
WP_000013072.1\|637778_638183_+	hypothetical protein	C6ZR73	Salmonella_phage	5.3e-67	100.0
WP_000729924.1\|638186_638675_+	DNA-packaging protein	A8CGG1	Salmonella_phage	2.9e-88	100.0
WP_000417865.1\|638652_640152_+\|terminase	terminase large subunit	A8CGE0	Salmonella_phage	6.9e-306	99.8
WP_000774659.1\|640151_642329_+\|portal	portal protein	I6R968	Salmonella_phage	0.0e+00	98.3
WP_000433856.1\|642342_643254_+	scaffold protein	A0A1R3Y5R6	Salmonella_virus	4.9e-161	100.0
WP_001196933.1\|643253_644546_+\|coat	coat protein	C6ZR10	Salmonella_phage	1.1e-243	99.8
WP_000538677.1\|644586_645147_+	hypothetical protein	C6ZR11	Salmonella_phage	1.4e-102	98.9
WP_001166101.1\|645130_645631_+	packaged DNA stabilization gp4 family protein	I1TEJ0	Salmonella_phage	5.5e-90	98.8
WP_001122417.1\|645590_647009_+	packaged DNA stabilization protein gp10	I1TEJ1	Salmonella_phage	3.3e-273	98.3
WP_000774923.1\|647012_647714_+	hypothetical protein	B8K1I3	Salmonella_phage	8.8e-70	98.3
WP_000627695.1\|647713_648169_+	DUF2824 family protein	B8K1I4	Salmonella_phage	1.4e-87	100.0
WP_000964898.1\|648171_648861_+	hypothetical protein	E7C9U4	Salmonella_phage	1.2e-108	99.6
WP_000246968.1\|648871_650176_+	DNA transfer protein	E7C9U5	Salmonella_phage	7.8e-213	96.3
WP_001262317.1\|650175_652089_+	hypothetical protein	E7C9U6	Salmonella_phage	0.0e+00	100.0
WP_000889769.1\|652106_652436_-	hypothetical protein	NA	NA	NA	NA
WP_000757527.1\|652466_652832_+	hypothetical protein	E7C9U7	Salmonella_phage	8.1e-67	100.0
WP_001085430.1\|652845_653025_-	hypothetical protein	B8K1I9	Salmonella_phage	2.1e-28	100.0
WP_000532175.1\|653124_653376_-	Arc family DNA-binding protein	E7C9U8	Salmonella_phage	1.4e-38	100.0
WP_000129929.1\|653511_655515_+	endorhamnosidase	E7C9U9	Salmonella_phage	0.0e+00	99.9
WP_000671499.1\|655573_657031_-	glucosyltransferase domain-containing protein	E7C9N7	Salmonella_phage	1.7e-240	99.8
WP_000703639.1\|657020_657953_-	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	5.5e-176	100.0
WP_000915528.1\|657949_658312_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	5.0e-61	100.0
WP_001575778.1\|659795_661448_-	hypothetical protein	B9UDL6	Salmonella_phage	1.5e-83	38.0
WP_000703618.1\|661428_662355_-	glycosyltransferase family 2 protein	I1TED8	Salmonella_phage	1.4e-168	96.7
WP_000915523.1\|662351_662714_-	GtrA family protein	I1TED9	Salmonella_phage	3.9e-61	100.0
663008:663048	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1000021 : 1007334

Dickeya_phage(16.67%)

protease,integrase

attL 1001272:1001286|attR 1012265:1012279

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201752.1\|1000021_1001140_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	38.9
WP_000125884.1\|1001136_1003083_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	41.9
1001272:1001286	attL	NA	NA	NA	NA
WP_000447499.1\|1003212_1003434_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|1003757_1004078_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934064.1\|1004108_1006385_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_001117984.1\|1006597_1006795_-	hypothetical protein	NA	NA	NA	NA
WP_001539594.1\|1006956_1007334_-\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
1012265:1012279	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1078186 : 1138734

Salmonella_phage(48.78%)

plate,holin,tail,terminase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001262311.1\|1078186_1079479_-	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.3e-252	99.8
WP_000065276.1\|1079523_1079772_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001237031.1\|1079812_1080052_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000394220.1\|1081216_1084405_-	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	74.1
WP_000917690.1\|1084545_1084716_-	hypothetical protein	K7PGY4	Enterobacteria_phage	3.9e-08	51.0
WP_001009036.1\|1085114_1085519_-	transcriptional regulator	H6WRX4	Salmonella_phage	7.1e-72	99.3
WP_000869364.1\|1085648_1085885_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.8e-38	100.0
WP_001574095.1\|1085850_1086225_+	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000062941.1\|1086309_1087293_+	replication protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_000800010.1\|1087295_1088045_+	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_000113623.1\|1088055_1088403_+	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
WP_000065105.1\|1088399_1088924_+	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
WP_000445793.1\|1088923_1089397_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	4.7e-67	79.5
WP_000208074.1\|1089400_1089973_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
WP_001217670.1\|1090488_1090728_+	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
WP_000929791.1\|1091062_1091665_+	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
WP_001096559.1\|1091873_1092485_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
WP_001617856.1\|1092481_1092628_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001047633.1\|1092617_1093415_+	antitermination protein	A0A0M4S661	Salmonella_phage	4.4e-150	99.2
WP_162096904.1\|1093819_1094161_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	9.6e-46	80.4
WP_001005899.1\|1094163_1094778_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.2e-107	94.1
WP_001050813.1\|1094774_1095326_+	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_000403520.1\|1095315_1095729_+	hypothetical protein	NA	NA	NA	NA
WP_001118137.1\|1095790_1096765_+\|terminase	terminase small subunit	C5IHM0	Burkholderia_virus	1.6e-29	37.3
WP_000179870.1\|1096754_1098026_+	hypothetical protein	A0A0U2JTW9	Escherichia_phage	1.1e-83	38.3
WP_001150142.1\|1098025_1099456_+	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	2.6e-92	37.9
WP_001084016.1\|1099427_1100303_+	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.5e-55	45.5
WP_001099363.1\|1100303_1101878_+	NUDIX hydrolase	Q6UJ14	Burkholderia_virus	2.2e-20	48.6
WP_001574105.1\|1101898_1102771_+	hypothetical protein	NA	NA	NA	NA
WP_001110971.1\|1102788_1103820_+	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	2.5e-73	45.2
WP_000780866.1\|1103884_1104370_+	hypothetical protein	NA	NA	NA	NA
WP_001114360.1\|1104382_1104808_+	hypothetical protein	NA	NA	NA	NA
WP_031617308.1\|1104825_1105236_+	hypothetical protein	NA	NA	NA	NA
WP_001139602.1\|1105219_1106158_+	hypothetical protein	A0A0U2SH76	Escherichia_phage	2.9e-52	39.9
WP_001018952.1\|1106162_1107557_+	hypothetical protein	A0A0U2KD19	Escherichia_phage	1.2e-70	37.0
WP_001133547.1\|1107560_1107998_+	hypothetical protein	NA	NA	NA	NA
WP_000268742.1\|1107997_1108585_+	hypothetical protein	NA	NA	NA	NA
WP_000729222.1\|1108708_1110763_+	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	7.7e-21	36.3
WP_000011140.1\|1110762_1111260_+	hypothetical protein	A0A0U2JGI7	Escherichia_phage	8.9e-24	38.0
WP_000100901.1\|1111475_1111751_+	hypothetical protein	A0A0U2JGJ3	Escherichia_phage	1.6e-06	33.3
WP_001271127.1\|1111750_1112803_+	hypothetical protein	NA	NA	NA	NA
WP_000055864.1\|1112799_1113516_+	hypothetical protein	NA	NA	NA	NA
WP_001261467.1\|1113512_1113845_+	hypothetical protein	NA	NA	NA	NA
WP_001281709.1\|1113841_1115068_+\|plate	baseplate J/gp47 family protein	A0A0U2RJZ0	Escherichia_phage	1.4e-147	63.9
WP_000729406.1\|1115051_1115678_+	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
WP_000583381.1\|1115674_1117384_+\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	1.5e-91	66.0
WP_000143167.1\|1117383_1117965_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001574112.1\|1118442_1119411_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	3.3e-192	99.1
WP_000334547.1\|1120058_1120685_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_001525490.1\|1121044_1121731_-	hypothetical protein	NA	NA	NA	NA
WP_000497439.1\|1122001_1122193_-	DinI-like family protein	S4TNM0	Salmonella_phage	1.8e-25	93.7
WP_000193790.1\|1122619_1125232_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.8
WP_000291723.1\|1125439_1126450_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001574119.1\|1126615_1127158_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224079.1\|1127154_1128264_-	YcbX family protein	NA	NA	NA	NA
WP_001086485.1\|1128362_1130471_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000053044.1\|1130483_1132391_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_000333152.1\|1132405_1133659_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433414.1\|1133663_1135304_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000759134.1\|1135300_1135864_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|1136119_1136287_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|1136386_1136905_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156448.1\|1136973_1138734_-\|protease	Lon protease family protein	NA	NA	NA	NA

DBSCAN-SWA_4

1351455 : 1427644

Enterobacteria_phage(25.0%)

holin,integrase,tail,terminase,portal,protease,lysis

attL 1352536:1352565|attR 1400267:1400296

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000087638.1\|1351455_1352535_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	1.5e-100	52.5
WP_024132384.1\|1352509_1352788_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.2e-09	36.4
1352536:1352565	attL	NA	NA	NA	NA
WP_000743301.1\|1352848_1353277_-	hypothetical protein	NA	NA	NA	NA
WP_000280163.1\|1353375_1353561_-	DUF1187 family protein	NA	NA	NA	NA
WP_001126030.1\|1353607_1354438_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	2.5e-103	71.6
WP_000023732.1\|1354430_1357121_-	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	4.0e-118	72.8
WP_000799627.1\|1357261_1357597_-	hypothetical protein	NA	NA	NA	NA
WP_000682660.1\|1357672_1357879_-	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
WP_000103933.1\|1357882_1358158_-	hypothetical protein	NA	NA	NA	NA
WP_071591195.1\|1358419_1358734_+	hypothetical protein	NA	NA	NA	NA
WP_001574209.1\|1359175_1359574_-	helix-turn-helix domain-containing protein	K7PH19	Enterobacteria_phage	1.2e-18	56.0
WP_001033912.1\|1359672_1359927_+	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	5.3e-17	60.9
WP_001574210.1\|1359913_1360408_+	hypothetical protein	NA	NA	NA	NA
WP_000729536.1\|1360454_1361453_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	4.1e-121	67.3
WP_158000546.1\|1361364_1361907_+	replication protein	A0A0U2JGJ0	Escherichia_phage	4.1e-67	75.5
WP_000089417.1\|1361919_1362315_+	DUF977 family protein	A0A088CBK9	Shigella_phage	9.8e-18	38.8
WP_000529512.1\|1362601_1363732_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_001237395.1\|1364128_1366108_+	MBL fold metallo-hydrolase	A0A2P0VMX1	Tetraselmis_virus	1.9e-162	46.3
WP_000911593.1\|1366796_1367045_+	hypothetical protein	NA	NA	NA	NA
WP_000940753.1\|1367108_1367708_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	4.7e-96	82.9
WP_000784710.1\|1367704_1367932_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.2e-14	66.7
WP_001097219.1\|1368061_1368709_+	antitermination protein	I6PDF8	Cronobacter_phage	2.1e-57	52.7
WP_001574213.1\|1368805_1369330_+	hypothetical protein	NA	NA	NA	NA
WP_000798708.1\|1369703_1370153_-	hypothetical protein	NA	NA	NA	NA
WP_001574215.1\|1370513_1371200_-	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.6
WP_001574216.1\|1371475_1371805_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_000984586.1\|1371788_1372241_+	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001541990.1\|1372258_1372738_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000371784.1\|1372945_1373479_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_000989241.1\|1373435_1375574_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
WP_000196190.1\|1375570_1375777_+	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_001009211.1\|1375773_1377321_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	7.0e-176	63.8
WP_010989008.1\|1377244_1379326_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
WP_001107908.1\|1379416_1379740_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_000774239.1\|1379732_1380032_+	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_000453192.1\|1380012_1380579_+\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	2.1e-13	95.7
WP_000196703.1\|1380575_1380977_+\|tail	tail protein	K7PHM6	Enterobacterial_phage	2.0e-42	60.9
WP_000132757.1\|1380988_1381738_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	4.8e-90	68.6
WP_000478858.1\|1381783_1382182_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_010989009.1\|1382178_1382508_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_077906652.1\|1382587_1385575_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	2.8e-266	62.1
WP_000978295.1\|1385571_1385904_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
WP_000725268.1\|1386002_1386500_+	Ail/Lom family outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	35.9
WP_000877926.1\|1386616_1387150_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152416.1\|1387239_1387935_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
WP_000606352.1\|1387944_1388676_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.0e-113	75.6
WP_001576012.1\|1388579_1389284_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.4e-67	63.1
WP_148206097.1\|1391844_1392708_+	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	9.0e-48	78.9
WP_000178848.1\|1392746_1392989_+	hypothetical protein	NA	NA	NA	NA
WP_001574223.1\|1393042_1395460_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	4.7e-86	62.8
WP_000143180.1\|1395459_1396029_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.4e-96	90.5
WP_000161701.1\|1396230_1396953_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
WP_001536069.1\|1397432_1398233_-	hypothetical protein	NA	NA	NA	NA
WP_000087644.1\|1399186_1400266_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	1.1e-98	52.0
WP_012535725.1\|1400262_1401210_-	PD-(D/E)XK nuclease-like domain-containing protein	Q9QF34	Lambdoid_phage	1.2e-53	65.0
1400267:1400296	attR	NA	NA	NA	NA
WP_001013468.1\|1401399_1401687_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.6e-38	93.9
WP_000055326.1\|1401683_1402217_+	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	3.2e-11	43.0
WP_000789530.1\|1402473_1402641_-	lytic enzyme	NA	NA	NA	NA
WP_001034751.1\|1402705_1402897_-	hypothetical protein	NA	NA	NA	NA
WP_049796172.1\|1403369_1403795_+	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	1.7e-55	93.0
WP_001751604.1\|1404350_1404551_-	phage virulence factor PagK family protein	NA	NA	NA	NA
WP_001574229.1\|1405118_1405244_+	hypothetical protein	NA	NA	NA	NA
WP_001520350.1\|1405757_1405904_-	hypothetical protein	NA	NA	NA	NA
WP_000848073.1\|1406391_1407006_-	disulfide bond formation protein B	NA	NA	NA	NA
WP_000480735.1\|1407015_1407174_-	hypothetical protein	NA	NA	NA	NA
WP_001617922.1\|1411349_1411490_-	hypothetical protein	NA	NA	NA	NA
WP_001752421.1\|1411655_1411925_-	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
WP_000354407.1\|1412294_1412714_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000030946.1\|1413086_1413563_-	hypothetical protein	NA	NA	NA	NA
WP_001752424.1\|1413944_1414286_-	DUF1398 family protein	NA	NA	NA	NA
WP_000182072.1\|1414969_1415692_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
WP_001134856.1\|1415976_1416141_+	membrane protein	NA	NA	NA	NA
WP_000986173.1\|1416364_1417015_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	7.2e-58	50.9
WP_000457838.1\|1417033_1417225_-	YebW family protein	NA	NA	NA	NA
WP_024131108.1\|1417335_1417572_-	DUF1480 family protein	NA	NA	NA	NA
WP_001531515.1\|1417689_1419129_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_001574233.1\|1419206_1421840_-	PqiB family protein	NA	NA	NA	NA
WP_001207294.1\|1421808_1423092_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_001518229.1\|1423220_1423718_+	GAF domain-containing protein	NA	NA	NA	NA
WP_000431401.1\|1423815_1424502_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_001091237.1\|1424521_1426570_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
WP_000984498.1\|1426762_1427644_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_5

2143448 : 2195582

Salmonella_phage(83.64%)

plate,capsid,holin,integrase,head,tail,terminase,transposase,portal

attL 2171349:2171363|attR 2191669:2191683

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001028173.1\|2143448_2144471_-\|transposase	IS110-like element ISSaen1 family transposase	NA	NA	NA	NA
WP_001176778.1\|2144932_2145751_-	hypothetical protein	NA	NA	NA	NA
WP_001526483.1\|2147093_2147315_-	helix-turn-helix domain-containing protein	Q8HAB1	Salmonella_phage	1.2e-36	100.0
WP_000492926.1\|2147527_2148535_+	type III secretion system effector arginine glycosyltransferase	Q8HAB2	Salmonella_phage	7.9e-197	100.0
WP_015701331.1\|2148819_2149419_-\|tail	tail fiber assembly protein	Q8HAB3	Salmonella_phage	5.9e-107	100.0
WP_000554737.1\|2149388_2150951_-	hypothetical protein	Q8HAB4	Salmonella_phage	2.6e-287	100.0
WP_001207832.1\|2150937_2151525_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_000785580.1\|2151527_2152607_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	2.5e-204	99.7
WP_000605050.1\|2152599_2153013_-	phage GP46 family protein	Q8HAB8	Salmonella_phage	1.1e-75	100.0
WP_001273649.1\|2153017_2153551_-\|plate	phage baseplate assembly protein	Q8HAB9	Salmonella_phage	1.4e-96	100.0
WP_001675739.1\|2153543_2154608_-	hypothetical protein	Q8HAC0	Salmonella_phage	4.2e-188	95.1
WP_000863818.1\|2154604_2155945_-	DNA circularization N-terminal domain-containing protein	A0A192Y5U9	Salmonella_phage	5.7e-251	99.6
WP_000785386.1\|2155978_2157907_-\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	99.7
WP_000588852.1\|2157991_2158318_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_000515952.1\|2158314_2158671_-\|tail	phage tail tube protein	A0A192Y8K0	Salmonella_phage	2.6e-62	100.0
WP_001007990.1\|2158670_2160167_-\|tail	phage tail sheath subtilisin-like domain-containing protein	Q8HAC5	Salmonella_phage	3.0e-277	99.6
WP_000497739.1\|2160156_2160321_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	1.0e-24	100.0
WP_000779217.1\|2160324_2160885_-	hypothetical protein	Q8HAC7	Salmonella_phage	8.8e-105	99.5
WP_001135697.1\|2160881_2161394_-	hypothetical protein	Q8HAC8	Salmonella_phage	4.6e-92	100.0
WP_000702409.1\|2161365_2161770_-\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	5.4e-72	99.3
WP_000927378.1\|2161766_2162090_-\|head,tail	phage gp6-like head-tail connector protein	A0A192Y8J4	Salmonella_phage	6.3e-55	100.0
WP_000601353.1\|2162092_2162293_-	hypothetical protein	Q8HAD1	Salmonella_phage	1.4e-28	100.0
WP_000257528.1\|2162343_2163549_-\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	1.6e-223	100.0
WP_000466259.1\|2164191_2165433_-\|portal	phage portal protein	Q8HAD4	Salmonella_phage	1.7e-241	99.5
WP_000605609.1\|2165432_2165615_-	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
WP_000088185.1\|2165626_2167360_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	99.8
WP_000929191.1\|2167356_2167851_-\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	4.6e-89	100.0
WP_001135209.1\|2167977_2168328_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	8.0e-64	97.4
WP_033868734.1\|2168455_2168890_-	hypothetical protein	NA	NA	NA	NA
WP_001574547.1\|2169415_2169808_-	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	1.6e-57	92.3
WP_001148532.1\|2169791_2170268_-	glycoside hydrolase family protein	Q8SBE0	Shigella_phage	1.7e-85	96.8
WP_162138162.1\|2170271_2170613_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.2e-51	91.2
WP_024132393.1\|2170750_2170993_-	hypothetical protein	NA	NA	NA	NA
WP_001047086.1\|2171281_2172034_-	antitermination protein	A0A192Y5X6	Salmonella_phage	2.4e-134	92.0
2171349:2171363	attL	NA	NA	NA	NA
WP_024132394.1\|2172047_2173037_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	3.0e-188	97.0
WP_001061462.1\|2173044_2173905_-	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	2.7e-161	99.0
WP_000779148.1\|2173921_2174311_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.9e-70	100.0
WP_000200163.1\|2174319_2175201_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.1e-170	99.3
WP_000054229.1\|2175197_2175671_-	PerC family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	6.6e-53	93.8
WP_000096530.1\|2175667_2176642_-	conserved phage C-terminal domain-containing protein	A0A1C9IHW0	Salmonella_phage	1.2e-165	98.1
WP_000620702.1\|2176638_2176863_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_001087400.1\|2176859_2178002_-	Rha family phage regulatory protein	A0A1C9IHV9	Salmonella_phage	4.3e-183	87.9
WP_000509727.1\|2177998_2178553_-	hypothetical protein	A0A1C9II13	Salmonella_phage	5.9e-101	99.5
WP_001191666.1\|2178581_2178806_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_001020640.1\|2178903_2179599_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	4.6e-127	99.6
WP_024132396.1\|2179803_2179989_+	hypothetical protein	A0A1C9II97	Salmonella_phage	1.2e-13	73.3
WP_001574551.1\|2179916_2180168_+	hypothetical protein	NA	NA	NA	NA
WP_001752499.1\|2180148_2180445_+	hypothetical protein	Q8SBF7	Shigella_phage	1.1e-50	98.0
WP_000997190.1\|2181144_2181516_+	hypothetical protein	Q8HAA1	Salmonella_phage	1.1e-63	100.0
WP_000080407.1\|2181573_2182401_+	DUF2303 family protein	Q8HAA2	Salmonella_phage	7.1e-151	97.8
WP_000008351.1\|2182537_2183077_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
WP_001017850.1\|2183147_2183885_+	ead/Ea22-like family protein	A0A0M5M1J9	Salmonella_phage	1.8e-52	86.3
WP_000082797.1\|2183884_2184358_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	5.0e-69	80.3
WP_000208093.1\|2184361_2185111_+	hypothetical protein	H6WRY2	Salmonella_phage	1.1e-46	83.6
WP_001061368.1\|2185107_2185677_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	3.4e-104	91.5
WP_001527041.1\|2185716_2185944_+	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	3.2e-37	100.0
WP_000532846.1\|2185945_2186935_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	4.3e-195	99.7
WP_000598920.1\|2187226_2188024_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_001675745.1\|2188379_2189654_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	8.2e-74	40.1
WP_000042271.1\|2189725_2189977_-	hypothetical protein	NA	NA	NA	NA
WP_001084817.1\|2190455_2190953_-	hypothetical protein	NA	NA	NA	NA
WP_000072672.1\|2191314_2191878_-	hypothetical protein	NA	NA	NA	NA
2191669:2191683	attR	NA	NA	NA	NA
WP_000028416.1\|2192288_2193170_+	toll/interleukin-1 receptor domain-containing protein	A0A097BYB4	Enterococcus_phage	3.3e-29	42.0
WP_001127942.1\|2193743_2195582_-\|tail	tail fiber protein	I1TR70	Cronobacter_phage	1.0e-32	49.0

DBSCAN-SWA_6

2302577 : 2313084

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126349.1\|2302577_2303891_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565910.1\|2303917_2304997_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
WP_000648783.1\|2305001_2305775_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018217.1\|2305790_2306765_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973709.1\|2306770_2307322_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-52	58.0
WP_000857534.1\|2307322_2308201_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	4.6e-108	65.2
WP_001023658.1\|2308248_2309148_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000697846.1\|2309147_2310233_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_000981469.1\|2310609_2311503_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001144951.1\|2311680_2313084_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.0e-21	26.5

DBSCAN-SWA_7

2380282 : 2389453

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195332.1\|2380282_2382316_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703135.1\|2382556_2383015_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	7.1e-52	71.2
WP_001197951.1\|2383186_2383717_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950411.1\|2383773_2384241_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	8.8e-74	89.7
WP_000598637.1\|2384287_2385007_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272846.1\|2385003_2386689_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.9e-278	91.1
WP_001240419.1\|2386911_2387643_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.2e-100	87.4
WP_001261696.1\|2387702_2387810_+	protein YohO	NA	NA	NA	NA
WP_000824854.1\|2387790_2388522_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2388505_2389453_-	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	3.7e-10	27.8

DBSCAN-SWA_8

2625971 : 2632010

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000377779.1\|2625971_2626913_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.6e-146	87.8
WP_001576268.1\|2628155_2628545_+	GtrA family protein	A0A192Y6N5	Salmonella_phage	1.1e-50	85.6
WP_000703599.1\|2628513_2628768_+	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
WP_000400618.1\|2628785_2630708_+	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	8.1e-299	76.9
WP_105789228.1\|2631697_2631841_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.7e-12	82.9
WP_108594046.1\|2631779_2632010_-	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	5.4e-08	68.6

DBSCAN-SWA_9

2861084 : 2959989

Salmonella_phage(70.0%)

plate,capsid,integrase,head,tail,terminase,transposase,tRNA,portal,lysis

attL 2931269:2931287|attR 2975596:2975614

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000083339.1\|2861084_2861822_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219174.1\|2861951_2863286_+	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
WP_001675461.1\|2863303_2864203_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000188415.1\|2864305_2864893_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627809.1\|2864954_2865338_-	autonomous glycyl radical cofactor GrcA	A0A088FS37	Shigella_phage	6.1e-33	71.8
WP_000179978.1\|2865656_2866346_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000997368.1\|2866461_2867499_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098732.1\|2867702_2868122_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
WP_000609323.1\|2868194_2868875_+\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_000082638.1\|2868928_2871589_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949286.1\|2871703_2873059_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001264467.1\|2873103_2873427_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000807815.1\|2873423_2874725_-	MFS transporter	Q6JIH2	Burkholderia_virus	1.8e-44	30.6
WP_000985653.1\|2874828_2875284_-	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
WP_001235092.1\|2881063_2883637_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
WP_000992639.1\|2883766_2884498_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079130.1\|2884494_2885475_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197660.1\|2885606_2886344_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178449.1\|2886615_2886954_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_010989056.1\|2887057_2887105_+	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_000200076.1\|2887204_2888365_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000210984.1\|2888325_2889234_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225188.1\|2889291_2890413_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|2890422_2891493_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212379.1\|2891932_2892451_+	YfiR family protein	NA	NA	NA	NA
WP_001030986.1\|2892443_2893664_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_000065257.1\|2893821_2894169_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000469804.1\|2894209_2894977_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|2895021_2895570_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|2895588_2895837_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460052.1\|2896089_2897451_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|2897616_2898408_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_148206098.1\|2898427_2899714_+	DUF21 domain-containing protein	NA	NA	NA	NA
WP_001287926.1\|2899834_2900440_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|2900474_2901065_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059151.1\|2901188_2902067_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880975.1\|2902152_2903814_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203445.1\|2903962_2904301_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|2904466_2904757_-	RnfH family protein	NA	NA	NA	NA
WP_000242603.1\|2904746_2905223_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|2905372_2905855_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_001237698.1\|2906469_2917689_+	biofilm-associated protein BapA	NA	NA	NA	NA
WP_000533843.1\|2917753_2919163_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_001675489.1\|2919159_2919690_+	hypothetical protein	NA	NA	NA	NA
WP_001675939.1\|2919721_2921335_+	ATP-binding cassette domain-containing protein	F2Y302	Organic_Lake_phycodnavirus	9.6e-19	34.0
WP_012543392.1\|2921342_2922506_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_000980498.1\|2923057_2923276_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	2.1e-38	100.0
WP_001102266.1\|2923344_2924445_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	9.0e-194	98.6
WP_000980409.1\|2924441_2924927_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	8.3e-67	99.2
WP_001282767.1\|2924923_2927731_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.0
WP_000763317.1\|2927723_2927843_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	8.8e-15	97.4
WP_001280967.1\|2927857_2928160_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	9.4e-45	99.0
WP_001207653.1\|2928214_2928730_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	2.7e-92	99.4
WP_000046103.1\|2928739_2929912_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.3e-222	99.5
WP_000680167.1\|2930042_2930570_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_001274650.1\|2930572_2932258_-\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	3.5e-128	50.6
2931269:2931287	attL	NA	NA	NA	NA
WP_001086804.1\|2932254_2932860_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.3e-117	100.0
WP_000268273.1\|2932852_2933761_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	7.2e-157	98.0
WP_000177484.1\|2933747_2934107_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	3.5e-54	91.5
WP_000993756.1\|2934103_2934682_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.8e-92	86.5
WP_000192047.1\|2934777_2935644_+	hypothetical protein	NA	NA	NA	NA
WP_000829151.1\|2935670_2936117_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	3.1e-60	81.1
WP_001039937.1\|2936109_2936541_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.3e-71	93.7
WP_001574811.1\|2936636_2937065_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.3e-47	76.1
WP_000727849.1\|2937061_2937439_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	5.1e-16	39.2
WP_001069909.1\|2937440_2937953_-	lysozyme	E5G6N1	Salmonella_phage	3.1e-88	92.3
WP_000171568.1\|2937933_2938149_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868175.1\|2938152_2938356_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000673520.1\|2938355_2938820_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	4.2e-76	89.0
WP_000059191.1\|2938915_2939566_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_000742505.1\|2939569_2940628_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	4.9e-181	93.1
WP_000216232.1\|2940644_2941478_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	5.9e-121	84.5
WP_001574814.1\|2941620_2943387_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.3
WP_000520369.1\|2943386_2944418_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	5.9e-171	87.3
WP_000389025.1\|2944414_2945194_-	hypothetical protein	NA	NA	NA	NA
WP_000133007.1\|2945198_2946359_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_000190536.1\|2946779_2947658_+	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	4.0e-51	49.8
WP_000790439.1\|2947768_2948068_+	hypothetical protein	NA	NA	NA	NA
WP_001154444.1\|2948136_2948325_-	hypothetical protein	A0A1S6L006	Salmonella_phage	2.7e-26	100.0
WP_000017506.1\|2948480_2950877_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	93.7
WP_000104186.1\|2950873_2951731_-	DNA adenine methylase	E5G6L8	Salmonella_phage	1.5e-164	99.6
WP_000785509.1\|2951727_2951955_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.3e-35	93.3
WP_001244234.1\|2951954_2952188_-	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	2.0e-26	84.4
WP_000963195.1\|2952255_2952597_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
WP_000166366.1\|2952816_2953275_+	hypothetical protein	NA	NA	NA	NA
WP_000957775.1\|2953222_2953456_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
WP_000102104.1\|2954009_2954249_-	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	8.8e-38	98.7
WP_000052559.1\|2954365_2954998_+	helix-turn-helix domain-containing protein	A0A1S6KZZ7	Salmonella_phage	1.1e-66	58.6
WP_001574821.1\|2955001_2956027_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	9.2e-201	99.1
WP_001142974.1\|2956286_2956880_+	hypothetical protein	NA	NA	NA	NA
WP_000445376.1\|2957278_2958082_+	DUF3800 domain-containing protein	Q19UP3	Mannheimia_phage	1.2e-62	44.7
WP_089113803.1\|2958877_2959989_-\|transposase	IS3-like element IS1351 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.6e-07	25.6
2975596:2975614	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011205

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection