CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011297	Dictyoglomus thermophilum H-6-12, complete sequence	4 crisprs	cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL,cas8b1,cas2,csx3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,csa3	0	12	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011297_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011297_1

46252-50335

Orphan

Consensus_repeat	Method
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CRISPRCasFinder
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CRT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	PILER-CR

61 spacers

The CRISPR arrays of NC_011297_1

>merge|NC_011297|1|46252-50335|CRISPRCasFinder,CRT,PILER-CR
AATTGTAGCTTTCCTATGAGGGTATTAAAATAAATTTTGTAGCGTTTATGTAGTGTTAACGAGTTTGTAGCGTGCCTATAAGGGATTGAAACAGTGATAGTGGAAAAGTACAAAGTGGATCTTTGTTCGTTTGTAGCGTGCCTATAAGGGATTGAAACAGCTTTTCAAAAATCTGATATGCTCTTGTCCTAGAGTTTGTAGCGTGCCTATAAGGGATTGAAACAATGTAAACATAAGTGATATATATGTAACAGTAATTGTTTGTAGCGTGCCTATAAGGGATTGAAACTTAGTTGCGAAGTTCATTCTTAAAAAAGTTAAACCTGTTTGTAGCGTGCCTATAAGGGATTGAAACGGTACAGTTAGGAATGAATATGCAAGGCACTTTTAACTCGTTTGTAGCGTGCCTATAAGGGATTGAAACAGCTCTCCCAAGATGGCTAATAAAGGGGGTTAGAAAAGTTTGTAGCGTGCCTATAAGGGATTGAAACAAATTTACAGGAATAAGAAGCAAGATTTTTACTTTTGTTTGTAGCGTGCCTATAAGGGATTGAAACTGGAAACTTTTTTTAGCCCCGTATCCTATGAATTGCGTTTGTAGCGTGCCTATAAGGGATTGAAACGTGTAATACCAAAAAGAGTCTAATAAATCATTTGGCGTTTGTAGCGTGCCTATAAGGGATTGAAACTATAATTTGTGAATAAACTACAAATGACCAATCGTTGTTTGTAGCGTGCCTATAAGGGATTGAAACCTCCCTGATTTTATGTACGAAGCTGACGTTATTTTTGTTTGTAGCGTGCCTATAAGGGATTGAAACGGTGCAAAACCTCCCGTATCAACCAAAAAAATTGCGGTTTGTAGCGTGCCTATAAGGGATTGAAACAGGAGGTGATATAGAGGTGAGGATAAGAAAGATCACAGTTTGTAGCGTGCCTATAAGGGATTGAAACATATCTCTCTTATGCGGGGAAGAGCGACACCACGTAGGTTTGTAGCGTGCCTATAAGGGATTGAAACAAGCCCCCCAGCTTTCCAAAGATGAGTAAGCCTAGAAGGTTTGTAGCGTGCCTATAAGGGATTGAAACTTGTCCTCTCACCTCCCTATCACATAACAAGTTAACTTGTTTGTAGCGTGCCTATAAGGGATTGAAACTATATCGTTTCAAAATCAATCCCAACGTTGCAATTCCGTTTGTAGCGTGCCTATAAGGGATTGAAACGGAGAAGCCTATTCAGAAGCCTGAGATGATCCGCATAGTTTGTAGCGTGCCTATAAGGGATTGAAACCTTTTTCTACCGCCCTTATTCTTTTCCTTATTTTTCCTGTTTGTAGCGTGCCTATAAGGGATTGAAACATTTGACTGATGAGGAATGGGAGAAGGCGAGAAGGCAGTTTGTAGCGTGCCTATAAGGGATTGAAACTTTTACCCTTCTCCTTTCATTTTCTATTTTTGTAATGTTTGTAGCGTGCCTATAAGGGATTGAAACAAAAATAAAAAAAGTAGGTGAAAAAGAATGTTATATCGTTTGTAGCGTGCCTATAAGGGATTGAAACGGTGCAAAACCTCCCGTATCAACCAAAAAAATTGCGGTTTGTAGCGTGCCTATAAGGGATTGAAACGTCTCTTCTTTTTAGGTGTAGCTTTTTGTAACCCTTGTTTGTAGCGTGCCTATAAGGGATTGAAACAGGTTGGACATGCGTTCCCAATCTGCGAAGAATACAAAGTTTGTAGCGTGCCTATAAGGGATTGAAACGAGGTAGAGCTTGCAGTTCCTTTTGCGCCGTTCCTTGTTTGTAGCGTGCCTATAAGGGATTGAAACAAGCTTTGGCAAAAGATAAAAATAGAAGTAGCACTGGTTTGTAGCGTGCCTATAAGGGATTGAAACTTGCTTTTCGTAGTGTAAGGTCAATTGTGCCGTAGGTGTTTGTAGCGTGCCTATAAGGGATTGAAACAGTGGTGTGGGAAGTTCTAAACTAAACCAGTGATAAGTTTGTAGCGTGCCTATAAGGGATTGAAACAGAGATAAATCTTTCTGAACGATACATTGCGAGGAGGTTTGTAGCGTGCCTATAAGGGATTGAAACCGGAGTGTTAGGGTCAAAATTGGAGTGTTTTTCCAGGTTTGTAGCGTGCCTATAAGGGATTGAAACGATGGACTGGTAGAGAATATACATATTACGAAAGGGGTTTGTAGCGTGCCTATAAGGGATTGAAACTTGCGCTTCTAAGAGTTTTCATAGGGGGGAGGTAGAGTTTGTAGCGTGCCTATAAGGGATTGAAACTGGGACGGCTTGCGCCGTCCCAAGTTAAAACTCACAGTTTGTAGCGTGCCTATAAGGGATTGAAACAATAAAAAAAGGAGGAATGTAAAAAATGGCTGAACAAAAACGTTTGTAGCGTGCCTATAAGGGATTGAAACGGAAGTTCTCTCGATATGCCTTAAATTCATTCACAAGTTTGTAGCGTGCCTATAAGGGATTGAAACTCAAGATCTTGCCAGTGTATGCAGAACTGAATTCAAGTTTGTAGCGTGCCTATAAGGGATTGAAACAGCTTCTCTAATAGCTCTATGATCTCTGGATAGACTAGTTTGTAGCGTGCCTATAAGGGATTGAAACCAGTAGGATTTTGGAGGATAGACAGCACATATGGGAGTTTGTAGCGTGCCTATAAGGGATTGAAACCGTAGAACAGGTGAAGGAGTGGAAAAGAAGTTTAGAGCGTTTGTAGCGTGCCTATAAGGGATTGAAACTCTTTGCTCCTGGTTTACACCACTCAGGAGCAAAATCGTTTGTAGCGTGCCTATAAGGGATTGAAACTGTTCTGTACGCTCTTTATGTAGATACCAGCCTGTTGTTTGTAGCGTGCCTATAAGGGATTGAAACTGCGCTCTTCGTTTGCTTTCGAGAGCGTTCTGCCTACTGTTTGTAGCGTGCCTATAAGGGATTGAAACGAGGAACCGCAGAAAGACAAAACGTACGTTATAGGCGTTTGTAGCGTGCCTATAAGGGATTGAAACGACATCTTTTTATGAAACCTAAACAAATTCTTATTTGTTTGTAGCGTGCCTATAAGGGATTGAAACCTACTTATCCAGACCCTGAGAAAAAAGAAATTTTCAGTTTGTAGCGTGCCTATAAGGGATTGAAACTTTGCCCGACAATACTCTATCATTTCTTTTAATTCTTTGTTTGTAGCGTGCCTATAAGGGATTGAAACAAAACTTGAAAAATTTTCTTAAAAATATGGCTAAAGCGTTTGTAGCGTGCCTATAAGGGATTGAAACCCATTGTGCCAATAGGAGCTTCAGGTCTTTCGTCCGTTTGTAGCGTGCCTATAAGGGATTGAAACATTTTGGCAGTTAAAACATCAAGCTTTTGGAGAAGTGTTTGTAGCGTGCCTATAAGGGATTGAAACTATGATTTGAGAATATGCAAGGTAAGACCAATCGTTGTTTGTAGCGTGCCTATAAGGGATTGAAACTAAGCCTTTGTGCTTCTTCATAAGGAAATCCTGCTAGTTTGTAGCGTGCCTATAAGGGATTGAAACCTACGTTTGCAAGTAGCGGTATGCTATTTAATAGTCGTTTGTAGCGTGCCTATAAGGGATTGAAACACCTCAACCCTACCATAAATATCAACCTCATCTCCCGTTTGTAGCGTGCCTATAAGGGATTGAAACTTGCATACGGCGCCAAGAAGGAGAACCTAAACAAAAGTTTGTAGCGTGCCTATAAGGGATTGAAACCAAGGCATATAGGGAAGGGATTACGGATGTCTGGGGGTTTGTAGCGTGCCTATAAGGGATTGAAACTTGAATGGGACTTGGGTATCGAGCAAATAAGACATAAGTTTGTAGCGTGCCTATAAGGGATTGAAACAAGAAAAAGAGGGGAAGGAGAGCCCAAGGAGAAAACGTTTGTAGCGTGCCTATAAGGGATTGAAACATAATGAAATCTTTAAGCTTTTCTTTTGTTCTCCTTGTTTGTAGCGTGCCTATAAGGGATTGAAACGGATAACCAAGCACATCATCGGCAAATTTAGGATCTGTTTGTAGCGTGCCTATAAGGGATATGGTG

>NC_011297|1|1|46252-50335|CRISPRCasFinder
AATTGTAGCTTTCCTATGAGGGTATTAAAA	TAAATTTTGTAGCGTTTATGTAGTGTTAACGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTGATAGTGGAAAAGTACAAAGTGGATCTTTGTTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTTTTCAAAAATCTGATATGCTCTTGTCCTAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AATGTAAACATAAGTGATATATATGTAACAGTAATT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTAGTTGCGAAGTTCATTCTTAAAAAAGTTAAACCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTACAGTTAGGAATGAATATGCAAGGCACTTTTAACTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTCTCCCAAGATGGCTAATAAAGGGGGTTAGAAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAATTTACAGGAATAAGAAGCAAGATTTTTACTTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGGAAACTTTTTTTAGCCCCGTATCCTATGAATTGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTGTAATACCAAAAAGAGTCTAATAAATCATTTGGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATAATTTGTGAATAAACTACAAATGACCAATCGTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTCCCTGATTTTATGTACGAAGCTGACGTTATTTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTGCAAAACCTCCCGTATCAACCAAAAAAATTGCG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGAGGTGATATAGAGGTGAGGATAAGAAAGATCACA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATATCTCTCTTATGCGGGGAAGAGCGACACCACGTAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGCCCCCCAGCTTTCCAAAGATGAGTAAGCCTAGAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGTCCTCTCACCTCCCTATCACATAACAAGTTAACTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATATCGTTTCAAAATCAATCCCAACGTTGCAATTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGAGAAGCCTATTCAGAAGCCTGAGATGATCCGCATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTTTTCTACCGCCCTTATTCTTTTCCTTATTTTTCCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTTGACTGATGAGGAATGGGAGAAGGCGAGAAGGCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTTACCCTTCTCCTTTCATTTTCTATTTTTGTAAT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAAAATAAAAAAAGTAGGTGAAAAAGAATGTTATATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTGCAAAACCTCCCGTATCAACCAAAAAAATTGCG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTCTCTTCTTTTTAGGTGTAGCTTTTTGTAACCCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGTTGGACATGCGTTCCCAATCTGCGAAGAATACAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGGTAGAGCTTGCAGTTCCTTTTGCGCCGTTCCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGCTTTGGCAAAAGATAAAAATAGAAGTAGCACTG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCTTTTCGTAGTGTAAGGTCAATTGTGCCGTAGGT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTGGTGTGGGAAGTTCTAAACTAAACCAGTGATAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGAGATAAATCTTTCTGAACGATACATTGCGAGGAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CGGAGTGTTAGGGTCAAAATTGGAGTGTTTTTCCAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GATGGACTGGTAGAGAATATACATATTACGAAAGGG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCGCTTCTAAGAGTTTTCATAGGGGGGAGGTAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGGGACGGCTTGCGCCGTCCCAAGTTAAAACTCACA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AATAAAAAAAGGAGGAATGTAAAAAATGGCTGAACAAAAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGAAGTTCTCTCGATATGCCTTAAATTCATTCACAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCAAGATCTTGCCAGTGTATGCAGAACTGAATTCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTTCTCTAATAGCTCTATGATCTCTGGATAGACTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAGTAGGATTTTGGAGGATAGACAGCACATATGGGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CGTAGAACAGGTGAAGGAGTGGAAAAGAAGTTTAGAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCTTTGCTCCTGGTTTACACCACTCAGGAGCAAAATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGTTCTGTACGCTCTTTATGTAGATACCAGCCTGTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGCGCTCTTCGTTTGCTTTCGAGAGCGTTCTGCCTACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGGAACCGCAGAAAGACAAAACGTACGTTATAGGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GACATCTTTTTATGAAACCTAAACAAATTCTTATTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTACTTATCCAGACCCTGAGAAAAAAGAAATTTTCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTGCCCGACAATACTCTATCATTTCTTTTAATTCTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAAACTTGAAAAATTTTCTTAAAAATATGGCTAAAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CCATTGTGCCAATAGGAGCTTCAGGTCTTTCGTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTTTGGCAGTTAAAACATCAAGCTTTTGGAGAAGT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATGATTTGAGAATATGCAAGGTAAGACCAATCGTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TAAGCCTTTGTGCTTCTTCATAAGGAAATCCTGCTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTACGTTTGCAAGTAGCGGTATGCTATTTAATAGTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACCTCAACCCTACCATAAATATCAACCTCATCTCCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCATACGGCGCCAAGAAGGAGAACCTAAACAAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAAGGCATATAGGGAAGGGATTACGGATGTCTGGGG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGAATGGGACTTGGGTATCGAGCAAATAAGACATAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGAAAAAGAGGGGAAGGAGAGCCCAAGGAGAAAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATAATGAAATCTTTAAGCTTTTCTTTTGTTCTCCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGATAACCAAGCACATCATCGGCAAATTTAGGATCT
GTTTGTAGCGTGCCTATAAGGGATATGGTG

>NC_011297|1|1|46252-50335|CRT
AATTGTAGCTTTCCTATGAGGGTATTAAAA	TAAATTTTGTAGCGTTTATGTAGTGTTAACGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTGATAGTGGAAAAGTACAAAGTGGATCTTTGTTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTTTTCAAAAATCTGATATGCTCTTGTCCTAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AATGTAAACATAAGTGATATATATGTAACAGTAATT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTAGTTGCGAAGTTCATTCTTAAAAAAGTTAAACCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTACAGTTAGGAATGAATATGCAAGGCACTTTTAACTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTCTCCCAAGATGGCTAATAAAGGGGGTTAGAAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAATTTACAGGAATAAGAAGCAAGATTTTTACTTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGGAAACTTTTTTTAGCCCCGTATCCTATGAATTGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTGTAATACCAAAAAGAGTCTAATAAATCATTTGGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATAATTTGTGAATAAACTACAAATGACCAATCGTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTCCCTGATTTTATGTACGAAGCTGACGTTATTTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTGCAAAACCTCCCGTATCAACCAAAAAAATTGCG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGAGGTGATATAGAGGTGAGGATAAGAAAGATCACA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATATCTCTCTTATGCGGGGAAGAGCGACACCACGTAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGCCCCCCAGCTTTCCAAAGATGAGTAAGCCTAGAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGTCCTCTCACCTCCCTATCACATAACAAGTTAACTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATATCGTTTCAAAATCAATCCCAACGTTGCAATTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGAGAAGCCTATTCAGAAGCCTGAGATGATCCGCATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTTTTCTACCGCCCTTATTCTTTTCCTTATTTTTCCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTTGACTGATGAGGAATGGGAGAAGGCGAGAAGGCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTTACCCTTCTCCTTTCATTTTCTATTTTTGTAAT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAAAATAAAAAAAGTAGGTGAAAAAGAATGTTATATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTGCAAAACCTCCCGTATCAACCAAAAAAATTGCG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTCTCTTCTTTTTAGGTGTAGCTTTTTGTAACCCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGTTGGACATGCGTTCCCAATCTGCGAAGAATACAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGGTAGAGCTTGCAGTTCCTTTTGCGCCGTTCCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGCTTTGGCAAAAGATAAAAATAGAAGTAGCACTG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCTTTTCGTAGTGTAAGGTCAATTGTGCCGTAGGT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTGGTGTGGGAAGTTCTAAACTAAACCAGTGATAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGAGATAAATCTTTCTGAACGATACATTGCGAGGAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CGGAGTGTTAGGGTCAAAATTGGAGTGTTTTTCCAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GATGGACTGGTAGAGAATATACATATTACGAAAGGG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCGCTTCTAAGAGTTTTCATAGGGGGGAGGTAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGGGACGGCTTGCGCCGTCCCAAGTTAAAACTCACA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AATAAAAAAAGGAGGAATGTAAAAAATGGCTGAACAAAAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGAAGTTCTCTCGATATGCCTTAAATTCATTCACAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCAAGATCTTGCCAGTGTATGCAGAACTGAATTCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTTCTCTAATAGCTCTATGATCTCTGGATAGACTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAGTAGGATTTTGGAGGATAGACAGCACATATGGGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CGTAGAACAGGTGAAGGAGTGGAAAAGAAGTTTAGAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCTTTGCTCCTGGTTTACACCACTCAGGAGCAAAATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGTTCTGTACGCTCTTTATGTAGATACCAGCCTGTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGCGCTCTTCGTTTGCTTTCGAGAGCGTTCTGCCTACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGGAACCGCAGAAAGACAAAACGTACGTTATAGGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GACATCTTTTTATGAAACCTAAACAAATTCTTATTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTACTTATCCAGACCCTGAGAAAAAAGAAATTTTCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTGCCCGACAATACTCTATCATTTCTTTTAATTCTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAAACTTGAAAAATTTTCTTAAAAATATGGCTAAAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CCATTGTGCCAATAGGAGCTTCAGGTCTTTCGTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTTTGGCAGTTAAAACATCAAGCTTTTGGAGAAGT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATGATTTGAGAATATGCAAGGTAAGACCAATCGTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TAAGCCTTTGTGCTTCTTCATAAGGAAATCCTGCTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTACGTTTGCAAGTAGCGGTATGCTATTTAATAGTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACCTCAACCCTACCATAAATATCAACCTCATCTCCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCATACGGCGCCAAGAAGGAGAACCTAAACAAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAAGGCATATAGGGAAGGGATTACGGATGTCTGGGG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGAATGGGACTTGGGTATCGAGCAAATAAGACATAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGAAAAAGAGGGGAAGGAGAGCCCAAGGAGAAAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATAATGAAATCTTTAAGCTTTTCTTTTGTTCTCCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGATAACCAAGCACATCATCGGCAAATTTAGGATCT
GTTTGTAGCGTGCCTATAAGGGATATGGTG

>NC_011297|1|1|46314-50269|PILER-CR
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTGATAGTGGAAAAGTACAAAGTGGATCTTTGTTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTTTTCAAAAATCTGATATGCTCTTGTCCTAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AATGTAAACATAAGTGATATATATGTAACAGTAATT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTAGTTGCGAAGTTCATTCTTAAAAAAGTTAAACCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTACAGTTAGGAATGAATATGCAAGGCACTTTTAACTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTCTCCCAAGATGGCTAATAAAGGGGGTTAGAAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAATTTACAGGAATAAGAAGCAAGATTTTTACTTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGGAAACTTTTTTTAGCCCCGTATCCTATGAATTGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTGTAATACCAAAAAGAGTCTAATAAATCATTTGGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATAATTTGTGAATAAACTACAAATGACCAATCGTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTCCCTGATTTTATGTACGAAGCTGACGTTATTTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTGCAAAACCTCCCGTATCAACCAAAAAAATTGCG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGAGGTGATATAGAGGTGAGGATAAGAAAGATCACA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATATCTCTCTTATGCGGGGAAGAGCGACACCACGTAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGCCCCCCAGCTTTCCAAAGATGAGTAAGCCTAGAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGTCCTCTCACCTCCCTATCACATAACAAGTTAACTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATATCGTTTCAAAATCAATCCCAACGTTGCAATTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGAGAAGCCTATTCAGAAGCCTGAGATGATCCGCATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTTTTCTACCGCCCTTATTCTTTTCCTTATTTTTCCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTTGACTGATGAGGAATGGGAGAAGGCGAGAAGGCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTTACCCTTCTCCTTTCATTTTCTATTTTTGTAAT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAAAATAAAAAAAGTAGGTGAAAAAGAATGTTATATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTGCAAAACCTCCCGTATCAACCAAAAAAATTGCG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTCTCTTCTTTTTAGGTGTAGCTTTTTGTAACCCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGTTGGACATGCGTTCCCAATCTGCGAAGAATACAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGGTAGAGCTTGCAGTTCCTTTTGCGCCGTTCCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGCTTTGGCAAAAGATAAAAATAGAAGTAGCACTG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCTTTTCGTAGTGTAAGGTCAATTGTGCCGTAGGT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTGGTGTGGGAAGTTCTAAACTAAACCAGTGATAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGAGATAAATCTTTCTGAACGATACATTGCGAGGAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CGGAGTGTTAGGGTCAAAATTGGAGTGTTTTTCCAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GATGGACTGGTAGAGAATATACATATTACGAAAGGG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCGCTTCTAAGAGTTTTCATAGGGGGGAGGTAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGGGACGGCTTGCGCCGTCCCAAGTTAAAACTCACA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AATAAAAAAAGGAGGAATGTAAAAAATGGCTGAACAAAAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGAAGTTCTCTCGATATGCCTTAAATTCATTCACAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCAAGATCTTGCCAGTGTATGCAGAACTGAATTCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTTCTCTAATAGCTCTATGATCTCTGGATAGACTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAGTAGGATTTTGGAGGATAGACAGCACATATGGGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CGTAGAACAGGTGAAGGAGTGGAAAAGAAGTTTAGAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCTTTGCTCCTGGTTTACACCACTCAGGAGCAAAATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGTTCTGTACGCTCTTTATGTAGATACCAGCCTGTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGCGCTCTTCGTTTGCTTTCGAGAGCGTTCTGCCTACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGGAACCGCAGAAAGACAAAACGTACGTTATAGGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GACATCTTTTTATGAAACCTAAACAAATTCTTATTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTACTTATCCAGACCCTGAGAAAAAAGAAATTTTCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTGCCCGACAATACTCTATCATTTCTTTTAATTCTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAAACTTGAAAAATTTTCTTAAAAATATGGCTAAAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CCATTGTGCCAATAGGAGCTTCAGGTCTTTCGTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTTTGGCAGTTAAAACATCAAGCTTTTGGAGAAGT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATGATTTGAGAATATGCAAGGTAAGACCAATCGTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TAAGCCTTTGTGCTTCTTCATAAGGAAATCCTGCTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTACGTTTGCAAGTAGCGGTATGCTATTTAATAGTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACCTCAACCCTACCATAAATATCAACCTCATCTCCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCATACGGCGCCAAGAAGGAGAACCTAAACAAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAAGGCATATAGGGAAGGGATTACGGATGTCTGGGG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGAATGGGACTTGGGTATCGAGCAAATAAGACATAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGAAAAAGAGGGGAAGGAGAGCCCAAGGAGAAAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATAATGAAATCTTTAAGCTTTTCTTTTGTTCTCCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011297.1\|WP_012547692.1\|38920_40621_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270300
NC_011297.1\|WP_012547918.1\|52006_52405_+\|CrcB-family-protein	unknown	unknown	gnl\|CDD\|376809
NC_011297.1\|WP_012548799.1\|34161_35730_+\|FMN-binding-glutamate-synthase-family-protein	unknown	unknown	gnl\|CDD\|239202
NC_011297.1\|WP_012547413.1\|41619_42534_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
NC_011297.1\|WP_012547085.1\|52401_52764_+\|CrcB-family-protein	unknown	unknown	gnl\|CDD\|376809
NC_011297.1\|WP_012547275.1\|42684_44421_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NC_011297.1\|WP_012548261.1\|55181_57965_-\|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|178629
NC_011297.1\|WP_012547612.1\|37946_38876_+\|calcium/sodium-antiporter	unknown	unknown	gnl\|CDD\|223604
NC_011297.1\|WP_012546889.1\|44410_45901_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|227095
NC_011297.1\|WP_012546927.1\|35785_36619_-\|hypothetical-protein	unknown	unknown	unknown
NC_011297.1\|WP_012548216.1\|62396_63512_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225271
NC_011297.1\|WP_012548740.1\|61145_61709_-\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NC_011297.1\|WP_012548559.1\|33814_33967_+\|hypothetical-protein	unknown	unknown	unknown
NC_011297.1\|WP_012548330.1\|61827_62334_+\|hypothetical-protein	unknown	unknown	unknown
NC_011297.1\|WP_012548068.1\|59814_61149_-\|aminodeoxychorismate-synthase-component-I	unknown	unknown	gnl\|CDD\|223225
NC_011297.1\|WP_012548151.1\|52841_55169_-\|alpha-xylosidase	unknown	unknown	gnl\|CDD\|236731
NC_011297.1\|WP_012548484.1\|36741_37950_+\|glucuronate-isomerase	unknown	unknown	unknown
NC_011297.1\|WP_012548273.1\|59056_59809_-\|aminotransferase-class-IV	unknown	unknown	gnl\|CDD\|376449
NC_011297.1\|WP_012548541.1\|40718_41609_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_011297.1\|WP_143707888.1\|50411_51806_-\|alpha-L-fucosidase	unknown	unknown	gnl\|CDD\|214829

Protein	Function_ID	Function_description	E-value
NC_011297.1\|WP_012548151.1\|52841_55169_-\|alpha-xylosidase	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
NC_011297.1\|WP_012547918.1\|52006_52405_+\|CrcB-family-protein	gnl\|CDD\|376809	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB). CRCB is a family of bacterial integral membrane proteins with four TMs.. Over expression in E. coli also leads to camphor resistance.	7.88447e-28
NC_011297.1\|WP_012548799.1\|34161_35730_+\|FMN-binding-glutamate-synthase-family-protein	gnl\|CDD\|239202	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.	1.15618e-66
NC_011297.1\|WP_012547413.1\|41619_42534_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	1.42266e-129
NC_011297.1\|WP_012547085.1\|52401_52764_+\|CrcB-family-protein	gnl\|CDD\|376809	pfam02537, CRCB, CrcB-like protein, Camphor Resistance (CrcB). CRCB is a family of bacterial integral membrane proteins with four TMs.. Over expression in E. coli also leads to camphor resistance.	2.67832e-23
NC_011297.1\|WP_012547275.1\|42684_44421_+\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	5.69819e-45
NC_011297.1\|WP_012548261.1\|55181_57965_-\|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	gnl\|CDD\|178629	PLN03080, PLN03080, Probable beta-xylosidase; Provisional.	2.24111e-74
NC_011297.1\|WP_012547612.1\|37946_38876_+\|calcium/sodium-antiporter	gnl\|CDD\|223604	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism].	2.51204e-57
NC_011297.1\|WP_012546889.1\|44410_45901_+\|response-regulator-transcription-factor	gnl\|CDD\|227095	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms].	1.14207e-78
NC_011297.1\|WP_012548216.1\|62396_63512_-\|hypothetical-protein	gnl\|CDD\|225271	COG2407, FucI, L-fucose isomerase and related proteins [Carbohydrate transport and metabolism].	9.77895e-30
NC_011297.1\|WP_012548740.1\|61145_61709_-\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	7.88766e-94
NC_011297.1\|WP_012547692.1\|38920_40621_-\|extracellular-solute-binding-protein	gnl\|CDD\|270300	cd13582, PBP2_AlgQ_like_3, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	0
NC_011297.1\|WP_012548068.1\|59814_61149_-\|aminodeoxychorismate-synthase-component-I	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	1.85066e-147
NC_011297.1\|WP_012548273.1\|59056_59809_-\|aminotransferase-class-IV	gnl\|CDD\|376449	pfam01063, Aminotran_4, Amino-transferase class IV. The D-amino acid transferases (D-AAT) are required by bacteria to catalyze the synthesis of D-glutamic acid and D-alanine, which are essential constituents of bacterial cell wall and are the building block for other D-amino acids. Despite the difference in the structure of the substrates, D-AATs and L-ATTs have strong similarity.	1.60286e-41
NC_011297.1\|WP_012548541.1\|40718_41609_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.54988e-63
NC_011297.1\|WP_143707888.1\|50411_51806_-\|alpha-L-fucosidase	gnl\|CDD\|214829	smart00812, Alpha_L_fucos, Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.	2.01931e-167

>NC_011297.1|WP_012546889.1|44410_45901_+|response-regulator-transcription-factor
MYYKVLIADDEPVIRQGLKKIVNWNALGFKIVGEAEDGVEALDKVRKLDPDLCVIDIRMPGMDGLELISEIRKSKSEIKIIILTGYPEFEYAQKAISLGVQSYMLKPVDPQILKDELTKIYEDLERKKFLFEGSKEKILEKLLKGQISLTEKDVSKLLNFDLSWDSYQVVLMSSDNENVDKYEISQELKKFFPISFMIDGTLGFVIEDFKKDNRKITSLRNHLKNKFKEYFIFSVGDKVLSISQINYSYETALSLLRKRFLWENKGFLLYPCKKVNVNNFTHVDITDEVICALESCDFIKLETLLEKKMRYHMMREEQEQEIKLSYFELYINVITAFLKKYPKFKEYSSKYLKKRLFEGFYSKRTLLDLHNYVKDLLLELSKDLFDILGTSPLGKIAEYIEANYYKDLRLREIAKEFGYNPCYLGKIFRKYMGENFNTYLDKVRVNKAKELLISGGKVGEVAERVGYKDIDYFIMKFKKYTGKTPKNYIKEITGSL
>NC_011297.1|WP_012547275.1|42684_44421_+|sensor-histidine-kinase
MFKFQDLKIREKLILSFLVVSFIPILVLGAVTIIHFRNFALNSSAKEIYNELSFAKFKIMEMTNEAVNIANKLMIDQRLKEILLYRYKSPLEAYLKYSQYKDIENYKTLYANSIYRIRIYSENPTILENGVFYKATKKIKEKDWYKLAVNLNGFIIWDLVRQDEDIYSDYYFSLIRLLRDVYNERFGVLVINLNKLEMKSILNHTSYDTLLVNSDGLVIFSNKEDFIGKTFDIDLQRILSDKGYTYDLNNKKYLVFGVYLPLTGYNKDFYLVSMVPMEIIMREPQRMQRFALTMVFIAFAGSMFFTGIFSRSVSRRIGILNKAVDKISHGNWDLDIPLQGGDEIGRLSENVKMMAKNIKRLNELLMKQKDMKFKVLTNQLNPHFLFNTLETIHMMAVCNEQKEIADMVLKLGKILRKTIESKGTPIKLESEIELVKSYLEIQKYRLGRLNYDIEILTDISEIYVLPFLIQPIVENSIIHGLENKKDGGFIKIKIFKEDERLIISVEDNGIGMSKEKIESLLSNSDGESSKIGMRNTLERIKLFYGEEYGINIESSEGNGTRVDIILPYPPRREMGDVL
>NC_011297.1|WP_012547413.1|41619_42534_-|sugar-ABC-transporter-permease
MKFAQVLKIIRRQKYLILMIFPFVVWLIIFRYIPLWGWITAFQNYKPGIPIFQQQWVGLKYFKEMFSDPEFYLVMRNTLAMSLLGLIFGFPLPIILAILINEIRHNTFKRTVQTISYLPHFVSWVIVASIVHAMLAPDGVVNYALLKLGLIKQPILFFGEPKYFWWIVVFSDIWKELGWNTIIFLAAMTAINPELYEAAEVDGASRFRKIWHITLPGIMPTVIMILILSIGNIINIGFERQFLLRTSAVRNVSDVIDLYALDYGIRAGRFSFGTAAGIFKSVISLILLFSANKVSKKVTGHKII
>NC_011297.1|WP_012548541.1|40718_41609_-|carbohydrate-ABC-transporter-permease
MKRSLGEKIFDVINYSLMILLVVITLYPFLYVLAVSLNDPFDTIKGGITIFPRIFTLDNYKEIFNYPSIGRAALISTLRTVIGTITGVFSTAIVAYVLSRKDFFARKLVTTLFIITMYVGGGLVPEYLLIRGLGLMNNFLVYILPGLINPFNLIVVRAYIETLPSELQESAMIDGANDFVIFLKVILPLCIPVLATIALFIAVGHWNSWFDTYLYCGGNKNLTTLQYELQKILANAAASSTTIDYYSNLDPTRTMRVTPQSLRMAMTIITTLPIVLVYPFLQKYFIKGMTLGAIKN
>NC_011297.1|WP_012547692.1|38920_40621_-|extracellular-solute-binding-protein
MKKFERFLSWFLAFTLVFSLIVSVSIREVSAQAKLYKPMNPTPEANKPITFKVYIGEVNPNDDQFKSPVAQKIKELTGVTLDIEYAPNQAAVREKIQIMAASGDYPDIIYAKGDLSLLKDAGALIPLDDLIEKYAPNIKKAYGENLKRLKWSKEDPHIYCLGLTTDNDRTLDVNGGFMLQHRVVMELGYPRIRTLRDFENAIKAYYKKHPTTDGLPTIPLTLCADDWRTVISVTNPAFQATGAPDDGELYVDPKTLKCTFHYKRPIEKEYFRWLNRMWNEGLLDKETFIQKEDTYKAKIASGRVLALIDAGWAIGEPITALRRAGKYEYMYGYYPVTVSERIKQAPPDVRVGYTGGWGIAITKSCKDPVRAIKFLDWLCTEDANILRQWGIEGVHHIYVNGKRQFLPDVDQARRTDPYFGRKTGIGVYVYPWPRLPNYYIDSTGNPVVPDTTKEDIRKNYTEVEKKVLAAYKAEIWKDLFPKAEEYPVKTWGYLWMYPTPDEDMRAIGNKLFDYVIKNIPKVVMAPTKEFDKVWNEFLKGLDDLGAKKYEEYKTKQIREMVEFWKK
>NC_011297.1|WP_012547612.1|37946_38876_+|calcium/sodium-antiporter
MILSSILFNILLFILGLIFLIRGSDLFIERLKLIAKKMGVSEFVVGAILASVATTLPEISVSIISSLQGESSLAIGNALGSVLFNISVILGVSSLIMPIKVDEKGWKNSLLLFCISIIFGFAAIDRYLSRWEGLILLILYGIFVKRTLKGEWANQKEHKKKILVRDIVYVFITGGIVVLGSKLLVDSAVFFARMLKISEMIIGLTIVASGTSLPEFVNTITSIRKKTPNIGVGNIIGACILNILIVSGVAILINPVILAKKFLYLALPIILLIVLALTISLKRDNIIGRKTGLIFLVLYALFFILNWRI
>NC_011297.1|WP_012548484.1|36741_37950_+|glucuronate-isomerase
MVDKRNLEEKINKVLEKIKIIDIHTHLFPPSFKDLFLYGIDYLLTYHYLIAETVRYLPISPDDFYNLSLKEQAELVWKTLFVDRSPISESARGIVTILTEVGVDFEKKDLSLIRAYFDKIDMESYVDLIFEKAKIDYVVMTNDPLDENEMKYWKCNIFKDKRFRPSLRLDRLINDWENIREYLKVKDYKEIKDHLDKWFLMIEPLYIALSFPPDFRYPDDMLRSRLLEEIMLYAEERKVPIALMIGAKRSVNPSLRLAGDSVGKSNIESIENLCRSFPNNKFMVTMLSRENQHELCVTARKFKNLMIFGCWWFLNTPSLIEEITKMRLELLGFSFIPQHSDARVLEQLIYKWKHSKEIIKKVLYDKYLALIRSGWTLKEEDIERDITQLFRKNFEDFIFSKQ
>NC_011297.1|WP_012546927.1|35785_36619_-|hypothetical-protein
MIKNLKIKKTLLIIFTTVILSSFYSSKAFGFDWDSFLENLYHWNLTLQGNIYGDTYIYNDSLNTSFTVIDEYGDDYTFYINQNANHTKTSYMPLTLRIPLFYNDNLSIGFSSSQRYFQTKIFEEIGSITHDYDYDNLMGVAVGVYLSVKVLPRLWIFTTLGGAYYYLNTTADTLKPSWYGDPGLYWDGYFYEPGTPLKVRGETDYKFFFSIGMKYYIYSGIFLELTYYHFPGATINNMSYILEGPVDLKINVSPEKLPKPITIEESHVFTLGIGIGL
>NC_011297.1|WP_012548799.1|34161_35730_+|FMN-binding-glutamate-synthase-family-protein
MSFSKPNFSEATLTRLRLKDYSPFSGMCVTCLDGCPGYCEIAKSGVRGREYIYPKPYGKVTSASEKDYPVDFSHFNINGTCVGALGVEPDPDKATFPAVDIETRIGDIKLRGPWFTTGLGSTFIARDNWEGVAIGSALFGTMVGVGENVCGVDPDAEIKNGKVVRSPEMERRIRLFKEWQRDNYGGVIVQENVEDSRLGTLEYVIEQLGIEFVEIKWGQGAKDIGGEIKLSDIKRAKQLKDRGYIVFPDPDDPIIQDLYQKGGIKEFERHSRLGMASVEGFVKRAEELRKRGAKYISLKTGAYRPKDLALALRAASEGKADLLIVDGAGGGTGMSPWRMMNEWGIPTVYLEALTYKYAKMLAEKGKHVPTIAIAGGFTLEDHIFKGLALGAPYVKLVAMGRATLTAAMVGKNLGEWIKKGTIPKEYAEYGNDIEEIFVAVAEIKKILGDDWKKVPPAALSVYGYFDRLAVGLKQFMAGARKFKLEYITRDDIVALTKEAAEVTGIPYVMDLDHEESMKILFD
>NC_011297.1|WP_012548559.1|33814_33967_+|hypothetical-protein
MKITLGRVKIKESKTKQNRVNVNKVEDITLRSETVINNSPIVEYLRTKTF
>NC_011297.1|WP_143707888.1|50411_51806_-|alpha-L-fucosidase
MPEGPFEPTWESLKNYKIPEWYKDAKFGIFIHYGVYAVPAFGSEWYSRNMYVEGSPEYEHHLKTYGEHKKFGYKDFIPLFKAEKFDPYEWADLFKKAGAKYVVPVAEHHDGFAMYDCSFTRWCASKMGPKRDIIGELAKAVRDNFLTFGVSYHRAEHWWFFHEGMKFDSDVRDKEYFDLYGPAQPESMQPNEEFLEDWLLRLFEIVDKYQPQLVYFDWWIEQPAFEPYLKKFFAYYYNRAHEWGKGVVINYKLNAVPRECAVFDVERGKLGDIDPIYWQTDTSISRLSWGYIENDIYKPAKEIIWELVDIVSKNGNLLLNVGPKADGTIPEPAQKTLLEIGEWLLINGEAIYGSRPWRIYGEGPTKGNVGSFSEKEVIYTDKDFRFTTKGDILYAILMNKPEKDEVIIKSLSTDLTLYQKEIAKVEILELKGEVGFERSEEGLKVKIPKVEKLNYPITFKILGR
>NC_011297.1|WP_012547918.1|52006_52405_+|CrcB-family-protein
MKNIIAISIGAFFGAVCRFAISRLNFGSFPLTTLFVNVLGSFILGLITEIILEHIRMTETLRHMIITGFISSFTTFSSFILEIIELLIRGEITIAILYPISSILLGLLAFILGVRMAGVISVKQRKEECELI
>NC_011297.1|WP_012547085.1|52401_52764_+|CrcB-family-protein
MIYIIVGLGGTIGAILRYLVGNIFKKFTEKHGIVTFFINITGSFLIGYFSTRQIPEEFRYFLIAGLLGGFTTYSTFMSDIVKYLRERKHFEAFVYMFFSIFLGIIAAGLGIALANGIWKA
>NC_011297.1|WP_012548151.1|52841_55169_-|alpha-xylosidase
MKFTDGHWRVREGIRIHYPCILWDYEIKEKELVVYAPSSFVKNRGETLYGPLFEIHFSSPFPNIIEITSYHFKGVVEKGPNFEINRDKNYKPEILDEEDSITLKAGSLKVKINKKGTFQYTFYWKDKKLTSSGYKHMAYAIDESKNKYMVESLDLAVGELIYGLGERFGPFIKNGQSIEMWNADAGTVSDQTYKNIPFYVTNRDYGVFVNHPEKVSFEIATEHVERVQFSIPGEKINYFIIGGDNLKEVLENYTLLTGRPSLPPSWSFGLWLTTSFITNYDEKTVTSFIEGMKERNIPLHVFHFDCFWMREYHWVNFEWDDRVFPNPEEMLKRLKEKGLKICVWINPYIAQRSKLFEEGKEKGYLLKKPDGSVWQTDEWQPGMGIVDFTNPSARDWYSKHLRRLIKMGVDVFKTDFGERIPTDVVYYDGSDPEKMHNFYTYLYNKTVFETLKEELGEENAIVFARSATAGSQKFPVHWGGDSLSTYESMAETLRGGLSLSLCGFGFWSHDIAGFDSSATPDLYKRWVAFGLLSSHSRLHGNHDYKVPWLYDEEAVDVLRFFVNLKCSLMPYLYAKAIEAVEKGIPMLRAMVLEFEEDPTCHFLDREYMLGDSLLVAPIFSETGEVEYYLPNVGTWTNILTGEKKEGGKWYKEKFDYFSLPLMARPGSIIAVGENKEKPDYDYADNVTLHVFEPQEGKNISCEVYNQQRKIDLKINLIKENNIIKIEVEKDSGKPYSILLFNINGIKDVKGGKLEKTEKGTRIIPEKKIREIIIEL
>NC_011297.1|WP_012548261.1|55181_57965_-|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein
MNIEEKVKELISKLTLEEKIKLLPTRQAEIPRLNIREFYIGGEAAHGVAWLGKATVFPQPIGLSSSFDRELMKKIGNAVSQEARAYYYMRGKIGGLMLWAPTVDMLRDPRWGRTEEGYGEDPFLASEMAGAYIQGMQGDDPVYLKTAMTPKHFFANNNEKDRDKFSADIDPRNMYEYYLEVFRRVIEKYRAQCIMTAYNAVNGIPCIINPIVREVIKEKFGLEGCVVTDAADFSQTVTSHKTFGNHYETLAYALKAGIDAFTDNPDLVIESAWQALEKGLITEEDIDRAISNSLKVRFRLGEFDEEISKRFYVPPNQICNNEHSQLAYMAELKSVVLLKNENKFLPLKKEKINKIAVIGPLANKNYNDWYSGTYPYKVSVLQGIINRLYNKEILYHDSYDIVAIKSVKNNKYLRVIESGISPVWAVSDNITEKEVFKYIDWGWGKKSLQGIANGKYLTADDSTSAILSSAEEVFGWFVKEVFNIDPIGDGTYLIKTWNGKYAYIDEKEGNILKFKDSFENLPEEKFIFEKVEKGIEKACEIAQNSDIVILCVGNNPLVNGREDEDRIDIVLPEHQENLVREIFKVNPNIVLLVISSYPYAICWEKDHIPAILWSSHGGQEMGNAIADILLGNFSPAGRLNMTWYRSIHHIPPITDYDIIRGKRTYMYFDKEPLFSFGHGLTYTEFEYKNLILNSKNFKLNEEIKLSFEIENIGDMDSEEVPQVYIKALNSKVKRPNIQLKGFTRVFVPKGERVKVDITIPISELFIWDVREERYMVEKGEYEILIGASSKDIRLRDKFHIDGEEIKNRDPFKSTKAINFDDYHNVSFNTKRSFKETYVIFNDNDSFILFKDFEFKNKPKKVVMELSSNHSKIVLIFSKIGKEFSFEVLDTNNEWKEIVYLLGEHIEGIQDLYIKGEKGLKINWFRFE
>NC_011297.1|WP_012548273.1|59056_59809_-|aminotransferase-class-IV
MERKEYIYNFGLIPYETLYFENNNIHLVPEHYRRMKRAFKILNLPFLITLEKFEEHLKEYLAKIKKPFGALRIYFKEDKPIIKEKEIKYNKEIYNKGLSIKISKVKKHSNNILNYIKTFNMGINVIEEERAQRMGFDTCLFLNEKEFITETAFGNIFFRREKNIYTPHIQNGLLPGTMRKKVIETTKILGYKIHISFLKIEDIKHMEECFITTSIAGAFPVNNIENINFPSREFSLKLTEFEIFKRPWNT
>NC_011297.1|WP_012548068.1|59814_61149_-|aminodeoxychorismate-synthase-component-I
MIELDLRKEKFFIEPFSLYFLLKEDYSILLESNYFHKNFGRYSFIFLSPKEILICRDNDDAEDFLNKLSAEIEKKKKKNEDLIFNGGFVGFLSYDFGVDLYKIPRKKNPLNHKAFFGYYENFIIFDHLEKKILIPSEIYKDLKEIINSLKSSSYKDYKFKEHIVYNFFTNFKKDEYIEAIRKIKNYIYEGDVYQVNLSQRFYFNGKFDPYYIYYKLRKKNYGAFHAFIKLKDSYIISTSPELFLYKKKNKIITRPIKGTIKRAQNREEDKKNKRILMNDTKCRSELLMIVDLERNDFAKICIPESIHVKKLFEIESYSSVFHLVSTIEGSLKKDIEFKDIIKATFPGGSITGAPKLNAIKIIEELEKDPRGVYTGSIGFISNNLNMAFNIAIRTLIVEKDIAYYNVGGGIVWDSKEEDEYEETLAKGKPLLEVLLSSKNYVTKR
>NC_011297.1|WP_012548740.1|61145_61709_-|aminodeoxychorismate/anthranilate-synthase-component-II
MLLIVDNFDSFTYNLYNYFQRLKIKTLVKNRDKINISYISKLNPDYIVLSPGPGRPTDDHILLEIIDVFKNTKKILGVCLGHQAIGVYFGLKLVKAQKPMHGMIDEIIHDEKGVFKNIKNPLKVVRYHSLVLEKDKEGDNIEITAYTKNKEIMGIRHKFYKIEGVQFHPESIGTEDGIRLLKNFLEI
>NC_011297.1|WP_012548330.1|61827_62334_+|hypothetical-protein
MEIFVKKLLDKGYINDKDFFVIVTEVDYKDDIPLPKGMFKFQPNFLLHIVESVVGRNSDVVLKVYKALESKNLYKFNALFYRSMDIFGYDIEVKGQEFSEDEAENLSLTRKKYTQILEKMNKYIERLKKKLTEYFFEFYKEESEEMILGEEYINYFFGDDEDDDDMEE
>NC_011297.1|WP_012548216.1|62396_63512_-|hypothetical-protein
MKIKFLLSPIAYKVDEKLKEAKEYLGKYINLEESEDPDAIVLLTGGTEEEALKYLKDGLFIIPFGKANGLAASLEVQAYAKEKGIKTILITKPNENIMNILKVLDEFKNKKVGIIGKPSDWLIKSGNYDVLKDFGLEPIEISLKEVEENLKEDPSLTDKIWNLSKEKKITKEELLKATKVYTSLKKIIEKYNLYALTIRCFDLAINLKITGCLALSLLNSEGIISSCEGDTEALVTMLFVNKLTNKTPFMANLADIEKDEYTFAHCTIAINIPEYFNLNTHFETLSSVGIEGYINSEKITLLRIGRNKKFTVFTGEVVKRPFEENMCRTQITVKIKDDSFLKNPIGNHFVIVLGDEEEKIKSLEKLGWERV

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Crispr_ID: NC_011297_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011297_2

71018-73143

Unclear

I-A

Consensus_repeat	Method
GTTTAAATCCCACATAGTTCAGATCAAAC	CRISPRCasFinder
GTTTAAATCCCACATAGTTCAGATCAAAC	CRT
GTTTAAATCCCACATAGTTCAGATCAAAC	PILER-CR

32 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NC_011297_2

>merge|NC_011297|2|71018-73143|CRISPRCasFinder,CRT,PILER-CR
AAATAAATCCCACATAGTTCAGATCAAACACACTATCGATTAATTCAATATTCAGCAATTCGTGGTTTAAATCCCACATAGTTCAGATCAAACCTTTCATCTTCATCCCAATCAGCATCTTTCCAATCACGTTTAAATCCCACATAGTTCAGATCAAACGGGAGAGAAAAAATAAAAGCCTCTGTAGAAAAGGAGTTTAAATCCCACATAGTTCAGATCAAACTCCTTCTACTCGCAAGTCTATTGTCTTTGCAACAGCGTTTAAATCCCACATAGTTCAGATCAAACTTCTAAGCGTGTAAACAAGGTTTTTGAAGACGCAAAGTTTAAATCCCACATAGTTCAGATCAAACGCGCGGTTTGAGTTTTCTATAATTCCTAAAATTTCAGGGTTTAAATCCCACATAGTTCAGATCAAACGTTAACATCCCCTTCTATATATAGAGTGTCAAAATTGTTTAAATCCCACATAGTTCAGATCAAACCCAGTACCTGCCAACCCTGAAGCGCTTGTTGTAGCAGTTTAAATCCCACATAGTTCAGATCAAACGAGACTGCAGATGCTCTAAAACTTTTTGTTGCAGGTAGTTTAAATCCCACATAGTTCAGATCAAACGTTGTGTAATGGTACGCTTTCCAGTCTTCTCTTTCTTGTTTAAATCCCACATAGTTCAGATCAAACGATGATGGAAATTTTGAACATGAAGGTGTTGGAGAAGTTTAAATCCCACATAGTTCAGATCAAACTTCAAATAAATCTTGTCATCAAGCATAGTAAGTTTTGTTTAAATCCCACATAGTTCAGATCAAACTTACCATTGTAGGGGGTGGTTAAATGTTTATAAAGATGTTTAAATCCCACATAGTTCAGATCAAACCAGAGCTAAAGAGCTTTATTCTACCTAAAAAGAAAAAGTTTAAATCCCACATAGTTCAGATCAAACCTGCCTAAAAGATACTCAATTGGTACTTCTAACGCAGGTTTAAATCCCACATAGTTCAGATCAAACTGAAAGAAAAAGAAACAAAATCAATCGTGGTTTCCAAGTTTAAATCCCACATAGTTCAGATCAAACATAGCGAGTTCGATAAATACGGAACTCCTAACGTTGAGTTTAAATCCCACATAGTTCAGATCAAACGTCCTTCTCCATAATCTCAAGAATGCTTTTGTAAAGGTTTAAATCCCACATAGTTCAGATCAAACACAGTAATTCAGGAGGGATATTTTTCATTGCTTACTCGGTTTAAATCCCACATAGTTCAGATCAAACTGCCAAAACCAAAAGACTTTACAGAAAAAGAAGAAAGTTTAAATCCCACATAGTTCAGATCAAACCATATACTCGTTTCCGTTATCGAGTAGAGAAATAATGTTTAAATCCCACATAGTTCAGATCAAACTCCAACAATTCCACAAATTTTCACTCTCACTTCATGAGTTTAAATCCCACATAGTTCAGATCAAACTGCTGCGAGAGTACAACGGCAGTTAATGCTTTCTGCGTTTAAATCCCACATAGTTCAGATCAAACGGTTATATGGCAACATAAAAACATCCCCGCCCTCTACGTTTAAATCCCACATAGTTCAGATCAAACTTATGAGAAGACAAGAACAAAAAACAAATATCACGACGTTTAAATCCCACATAGTTCAGATCAAACTGAAATGTGAAATAAACTTTCTTTTCTTGATCATTGTTTAAATCCCACATAGTTCAGATCAAACTGCTTTTGTTAGACCTGGTGCGGTTATCAAAATGTCGTTTAAATCCCACATAGTTCAGATCAAACACAGAGGAACTACCACAATTCCCGATTAGGCAAAAAGAGTTTAAATCCCACATAGTTCAGATCAAACGATAACAAGCAACTTCCTTAAGGTATGTTTGCAGAAGTTTAAATCCCACATAGTTCAGATCAAACAGGCTTGAGAGTGGAGAGATAGTGGCGAGGACAGTAGGTTTAAATCCCACATAGTTCAGATCAAACTCTCAGAGGTGGTTCTTTCCACCCTCCACATTACGCACGTTTAAATCCCACATAGTTCAGATCAAACTTCCGATTTTAAGGTTGCCCTTATTCCCTTAGTACAGTTTAAATCCCACATAGTTCAGATCAAAC

>NC_011297|2|2|71018-73143|CRISPRCasFinder
AAATAAATCCCACATAGTTCAGATCAAAC	ACACTATCGATTAATTCAATATTCAGCAATTCGTG
GTTTAAATCCCACATAGTTCAGATCAAAC	CTTTCATCTTCATCCCAATCAGCATCTTTCCAATCAC
GTTTAAATCCCACATAGTTCAGATCAAAC	GGGAGAGAAAAAATAAAAGCCTCTGTAGAAAAGGA
GTTTAAATCCCACATAGTTCAGATCAAAC	TCCTTCTACTCGCAAGTCTATTGTCTTTGCAACAGC
GTTTAAATCCCACATAGTTCAGATCAAAC	TTCTAAGCGTGTAAACAAGGTTTTTGAAGACGCAAA
GTTTAAATCCCACATAGTTCAGATCAAAC	GCGCGGTTTGAGTTTTCTATAATTCCTAAAATTTCAGG
GTTTAAATCCCACATAGTTCAGATCAAAC	GTTAACATCCCCTTCTATATATAGAGTGTCAAAATT
GTTTAAATCCCACATAGTTCAGATCAAAC	CCAGTACCTGCCAACCCTGAAGCGCTTGTTGTAGCA
GTTTAAATCCCACATAGTTCAGATCAAAC	GAGACTGCAGATGCTCTAAAACTTTTTGTTGCAGGTA
GTTTAAATCCCACATAGTTCAGATCAAAC	GTTGTGTAATGGTACGCTTTCCAGTCTTCTCTTTCTT
GTTTAAATCCCACATAGTTCAGATCAAAC	GATGATGGAAATTTTGAACATGAAGGTGTTGGAGAA
GTTTAAATCCCACATAGTTCAGATCAAAC	TTCAAATAAATCTTGTCATCAAGCATAGTAAGTTTT
GTTTAAATCCCACATAGTTCAGATCAAAC	TTACCATTGTAGGGGGTGGTTAAATGTTTATAAAGAT
GTTTAAATCCCACATAGTTCAGATCAAAC	CAGAGCTAAAGAGCTTTATTCTACCTAAAAAGAAAAA
GTTTAAATCCCACATAGTTCAGATCAAAC	CTGCCTAAAAGATACTCAATTGGTACTTCTAACGCAG
GTTTAAATCCCACATAGTTCAGATCAAAC	TGAAAGAAAAAGAAACAAAATCAATCGTGGTTTCCAA
GTTTAAATCCCACATAGTTCAGATCAAAC	ATAGCGAGTTCGATAAATACGGAACTCCTAACGTTGA
GTTTAAATCCCACATAGTTCAGATCAAAC	GTCCTTCTCCATAATCTCAAGAATGCTTTTGTAAAG
GTTTAAATCCCACATAGTTCAGATCAAAC	ACAGTAATTCAGGAGGGATATTTTTCATTGCTTACTCG
GTTTAAATCCCACATAGTTCAGATCAAAC	TGCCAAAACCAAAAGACTTTACAGAAAAAGAAGAAA
GTTTAAATCCCACATAGTTCAGATCAAAC	CATATACTCGTTTCCGTTATCGAGTAGAGAAATAAT
GTTTAAATCCCACATAGTTCAGATCAAAC	TCCAACAATTCCACAAATTTTCACTCTCACTTCATGA
GTTTAAATCCCACATAGTTCAGATCAAAC	TGCTGCGAGAGTACAACGGCAGTTAATGCTTTCTGC
GTTTAAATCCCACATAGTTCAGATCAAAC	GGTTATATGGCAACATAAAAACATCCCCGCCCTCTAC
GTTTAAATCCCACATAGTTCAGATCAAAC	TTATGAGAAGACAAGAACAAAAAACAAATATCACGAC
GTTTAAATCCCACATAGTTCAGATCAAAC	TGAAATGTGAAATAAACTTTCTTTTCTTGATCATT
GTTTAAATCCCACATAGTTCAGATCAAAC	TGCTTTTGTTAGACCTGGTGCGGTTATCAAAATGTC
GTTTAAATCCCACATAGTTCAGATCAAAC	ACAGAGGAACTACCACAATTCCCGATTAGGCAAAAAGA
GTTTAAATCCCACATAGTTCAGATCAAAC	GATAACAAGCAACTTCCTTAAGGTATGTTTGCAGAA
GTTTAAATCCCACATAGTTCAGATCAAAC	AGGCTTGAGAGTGGAGAGATAGTGGCGAGGACAGTAG
GTTTAAATCCCACATAGTTCAGATCAAAC	TCTCAGAGGTGGTTCTTTCCACCCTCCACATTACGCAC
GTTTAAATCCCACATAGTTCAGATCAAAC	TTCCGATTTTAAGGTTGCCCTTATTCCCTTAGTACA
GTTTAAATCCCACATAGTTCAGATCAAAC

>NC_011297|2|2|71018-73143|CRT
AAATAAATCCCACATAGTTCAGATCAAAC	ACACTATCGATTAATTCAATATTCAGCAATTCGTG
GTTTAAATCCCACATAGTTCAGATCAAAC	CTTTCATCTTCATCCCAATCAGCATCTTTCCAATCAC
GTTTAAATCCCACATAGTTCAGATCAAAC	GGGAGAGAAAAAATAAAAGCCTCTGTAGAAAAGGA
GTTTAAATCCCACATAGTTCAGATCAAAC	TCCTTCTACTCGCAAGTCTATTGTCTTTGCAACAGC
GTTTAAATCCCACATAGTTCAGATCAAAC	TTCTAAGCGTGTAAACAAGGTTTTTGAAGACGCAAA
GTTTAAATCCCACATAGTTCAGATCAAAC	GCGCGGTTTGAGTTTTCTATAATTCCTAAAATTTCAGG
GTTTAAATCCCACATAGTTCAGATCAAAC	GTTAACATCCCCTTCTATATATAGAGTGTCAAAATT
GTTTAAATCCCACATAGTTCAGATCAAAC	CCAGTACCTGCCAACCCTGAAGCGCTTGTTGTAGCA
GTTTAAATCCCACATAGTTCAGATCAAAC	GAGACTGCAGATGCTCTAAAACTTTTTGTTGCAGGTA
GTTTAAATCCCACATAGTTCAGATCAAAC	GTTGTGTAATGGTACGCTTTCCAGTCTTCTCTTTCTT
GTTTAAATCCCACATAGTTCAGATCAAAC	GATGATGGAAATTTTGAACATGAAGGTGTTGGAGAA
GTTTAAATCCCACATAGTTCAGATCAAAC	TTCAAATAAATCTTGTCATCAAGCATAGTAAGTTTT
GTTTAAATCCCACATAGTTCAGATCAAAC	TTACCATTGTAGGGGGTGGTTAAATGTTTATAAAGAT
GTTTAAATCCCACATAGTTCAGATCAAAC	CAGAGCTAAAGAGCTTTATTCTACCTAAAAAGAAAAA
GTTTAAATCCCACATAGTTCAGATCAAAC	CTGCCTAAAAGATACTCAATTGGTACTTCTAACGCAG
GTTTAAATCCCACATAGTTCAGATCAAAC	TGAAAGAAAAAGAAACAAAATCAATCGTGGTTTCCAA
GTTTAAATCCCACATAGTTCAGATCAAAC	ATAGCGAGTTCGATAAATACGGAACTCCTAACGTTGA
GTTTAAATCCCACATAGTTCAGATCAAAC	GTCCTTCTCCATAATCTCAAGAATGCTTTTGTAAAG
GTTTAAATCCCACATAGTTCAGATCAAAC	ACAGTAATTCAGGAGGGATATTTTTCATTGCTTACTCG
GTTTAAATCCCACATAGTTCAGATCAAAC	TGCCAAAACCAAAAGACTTTACAGAAAAAGAAGAAA
GTTTAAATCCCACATAGTTCAGATCAAAC	CATATACTCGTTTCCGTTATCGAGTAGAGAAATAAT
GTTTAAATCCCACATAGTTCAGATCAAAC	TCCAACAATTCCACAAATTTTCACTCTCACTTCATGA
GTTTAAATCCCACATAGTTCAGATCAAAC	TGCTGCGAGAGTACAACGGCAGTTAATGCTTTCTGC
GTTTAAATCCCACATAGTTCAGATCAAAC	GGTTATATGGCAACATAAAAACATCCCCGCCCTCTAC
GTTTAAATCCCACATAGTTCAGATCAAAC	TTATGAGAAGACAAGAACAAAAAACAAATATCACGAC
GTTTAAATCCCACATAGTTCAGATCAAAC	TGAAATGTGAAATAAACTTTCTTTTCTTGATCATT
GTTTAAATCCCACATAGTTCAGATCAAAC	TGCTTTTGTTAGACCTGGTGCGGTTATCAAAATGTC
GTTTAAATCCCACATAGTTCAGATCAAAC	ACAGAGGAACTACCACAATTCCCGATTAGGCAAAAAGA
GTTTAAATCCCACATAGTTCAGATCAAAC	GATAACAAGCAACTTCCTTAAGGTATGTTTGCAGAA
GTTTAAATCCCACATAGTTCAGATCAAAC	AGGCTTGAGAGTGGAGAGATAGTGGCGAGGACAGTAG
GTTTAAATCCCACATAGTTCAGATCAAAC	TCTCAGAGGTGGTTCTTTCCACCCTCCACATTACGCAC
GTTTAAATCCCACATAGTTCAGATCAAAC	TTCCGATTTTAAGGTTGCCCTTATTCCCTTAGTACA
GTTTAAATCCCACATAGTTCAGATCAAAC

>NC_011297|2|2|71082-73143|PILER-CR
GTTTAAATCCCACATAGTTCAGATCAAAC	CTTTCATCTTCATCCCAATCAGCATCTTTCCAATCAC
GTTTAAATCCCACATAGTTCAGATCAAAC	GGGAGAGAAAAAATAAAAGCCTCTGTAGAAAAGGA
GTTTAAATCCCACATAGTTCAGATCAAAC	TCCTTCTACTCGCAAGTCTATTGTCTTTGCAACAGC
GTTTAAATCCCACATAGTTCAGATCAAAC	TTCTAAGCGTGTAAACAAGGTTTTTGAAGACGCAAA
GTTTAAATCCCACATAGTTCAGATCAAAC	GCGCGGTTTGAGTTTTCTATAATTCCTAAAATTTCAGG
GTTTAAATCCCACATAGTTCAGATCAAAC	GTTAACATCCCCTTCTATATATAGAGTGTCAAAATT
GTTTAAATCCCACATAGTTCAGATCAAAC	CCAGTACCTGCCAACCCTGAAGCGCTTGTTGTAGCA
GTTTAAATCCCACATAGTTCAGATCAAAC	GAGACTGCAGATGCTCTAAAACTTTTTGTTGCAGGTA
GTTTAAATCCCACATAGTTCAGATCAAAC	GTTGTGTAATGGTACGCTTTCCAGTCTTCTCTTTCTT
GTTTAAATCCCACATAGTTCAGATCAAAC	GATGATGGAAATTTTGAACATGAAGGTGTTGGAGAA
GTTTAAATCCCACATAGTTCAGATCAAAC	TTCAAATAAATCTTGTCATCAAGCATAGTAAGTTTT
GTTTAAATCCCACATAGTTCAGATCAAAC	TTACCATTGTAGGGGGTGGTTAAATGTTTATAAAGAT
GTTTAAATCCCACATAGTTCAGATCAAAC	CAGAGCTAAAGAGCTTTATTCTACCTAAAAAGAAAAA
GTTTAAATCCCACATAGTTCAGATCAAAC	CTGCCTAAAAGATACTCAATTGGTACTTCTAACGCAG
GTTTAAATCCCACATAGTTCAGATCAAAC	TGAAAGAAAAAGAAACAAAATCAATCGTGGTTTCCAA
GTTTAAATCCCACATAGTTCAGATCAAAC	ATAGCGAGTTCGATAAATACGGAACTCCTAACGTTGA
GTTTAAATCCCACATAGTTCAGATCAAAC	GTCCTTCTCCATAATCTCAAGAATGCTTTTGTAAAG
GTTTAAATCCCACATAGTTCAGATCAAAC	ACAGTAATTCAGGAGGGATATTTTTCATTGCTTACTCG
GTTTAAATCCCACATAGTTCAGATCAAAC	TGCCAAAACCAAAAGACTTTACAGAAAAAGAAGAAA
GTTTAAATCCCACATAGTTCAGATCAAAC	CATATACTCGTTTCCGTTATCGAGTAGAGAAATAAT
GTTTAAATCCCACATAGTTCAGATCAAAC	TCCAACAATTCCACAAATTTTCACTCTCACTTCATGA
GTTTAAATCCCACATAGTTCAGATCAAAC	TGCTGCGAGAGTACAACGGCAGTTAATGCTTTCTGC
GTTTAAATCCCACATAGTTCAGATCAAAC	GGTTATATGGCAACATAAAAACATCCCCGCCCTCTAC
GTTTAAATCCCACATAGTTCAGATCAAAC	TTATGAGAAGACAAGAACAAAAAACAAATATCACGAC
GTTTAAATCCCACATAGTTCAGATCAAAC	TGAAATGTGAAATAAACTTTCTTTTCTTGATCATT
GTTTAAATCCCACATAGTTCAGATCAAAC	TGCTTTTGTTAGACCTGGTGCGGTTATCAAAATGTC
GTTTAAATCCCACATAGTTCAGATCAAAC	ACAGAGGAACTACCACAATTCCCGATTAGGCAAAAAGA
GTTTAAATCCCACATAGTTCAGATCAAAC	GATAACAAGCAACTTCCTTAAGGTATGTTTGCAGAA
GTTTAAATCCCACATAGTTCAGATCAAAC	AGGCTTGAGAGTGGAGAGATAGTGGCGAGGACAGTAG
GTTTAAATCCCACATAGTTCAGATCAAAC	TCTCAGAGGTGGTTCTTTCCACCCTCCACATTACGCAC
GTTTAAATCCCACATAGTTCAGATCAAAC	TTCCGATTTTAAGGTTGCCCTTATTCCCTTAGTACA
GTTTAAATCCCACATAGTTCAGATCAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011297.1\|WP_012548304.1\|78991_80668_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
NC_011297.1\|WP_012547747.1\|66548_67385_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NC_011297.1\|WP_012547321.1\|82943_83984_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|132997
NC_011297.1\|WP_012547047.1\|68908_69895_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380514
NC_011297.1\|WP_143707889.1\|80669_81413_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NC_011297.1\|WP_012548155.1\|67430_68888_+\|glycoside-hydrolase-family-32-protein	unknown	unknown	gnl\|CDD\|224536
NC_011297.1\|WP_012547637.1\|78076_78976_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_011297.1\|WP_012548768.1\|74610_75123_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_011297.1\|WP_012548216.1\|62396_63512_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225271
NC_011297.1\|WP_012548740.1\|61145_61709_-\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NC_011297.1\|WP_012547878.1\|65673_66549_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NC_011297.1\|WP_012548068.1\|59814_61149_-\|aminodeoxychorismate-synthase-component-I	unknown	unknown	gnl\|CDD\|223225
NC_011297.1\|WP_012547976.1\|73359_73623_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_011297.1\|WP_012548576.1\|63515_64022_-\|flavodoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|179647
NC_011297.1\|WP_012548486.1\|77388_78090_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NC_011297.1\|WP_012547158.1\|73625_74606_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_011297.1\|WP_012547914.1\|75143_77411_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|187770
NC_011297.1\|WP_012547938.1\|81673_82864_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341464
NC_011297.1\|WP_012548330.1\|61827_62334_+\|hypothetical-protein	unknown	unknown	unknown
NC_011297.1\|WP_012547482.1\|64287_65571_+\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224567

Protein	Function_ID	Function_description	E-value
NC_011297.1\|WP_012548304.1\|78991_80668_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	7.96764e-120
NC_011297.1\|WP_012547747.1\|66548_67385_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	8.2688e-66
NC_011297.1\|WP_012547047.1\|68908_69895_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380514	cd06291, PBP1_Qymf-like, ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	5.88586e-126
NC_011297.1\|WP_143707889.1\|80669_81413_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.84663e-28
NC_011297.1\|WP_012548155.1\|67430_68888_+\|glycoside-hydrolase-family-32-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	3.57483e-140
NC_011297.1\|WP_012547637.1\|78076_78976_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	7.55966e-65
NC_011297.1\|WP_012548768.1\|74610_75123_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.52738e-59
NC_011297.1\|WP_012548216.1\|62396_63512_-\|hypothetical-protein	gnl\|CDD\|225271	COG2407, FucI, L-fucose isomerase and related proteins [Carbohydrate transport and metabolism].	9.77895e-30
NC_011297.1\|WP_012548740.1\|61145_61709_-\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	7.88766e-94
NC_011297.1\|WP_012547878.1\|65673_66549_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.22794e-70
NC_011297.1\|WP_012548068.1\|59814_61149_-\|aminodeoxychorismate-synthase-component-I	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	1.85066e-147
NC_011297.1\|WP_012547976.1\|73359_73623_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.06563e-24
NC_011297.1\|WP_012548576.1\|63515_64022_-\|flavodoxin-domain-containing-protein	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	4.25374e-36
NC_011297.1\|WP_012548486.1\|77388_78090_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.30757e-32
NC_011297.1\|WP_012547158.1\|73625_74606_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	4.22948e-174
NC_011297.1\|WP_012547914.1\|75143_77411_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|187770	cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I.	2.41739e-67
NC_011297.1\|WP_012547938.1\|81673_82864_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341464	cd08185, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains iron-containing alcohol dehydrogenase-like (ADH) proteins. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized.	0
NC_011297.1\|WP_012547321.1\|82943_83984_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|132997	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities.	6.03196e-24
NC_011297.1\|WP_012547482.1\|64287_65571_+\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	4.55618e-38

>NC_011297.1|WP_012547047.1|68908_69895_-|LacI-family-DNA-binding-transcriptional-regulator
MPSLKDVAKRAGVSPTTVSRVLNNRGYISEETRRKVYKAMEELNYQPNEIARALFKKRSYFLGLIIPDISHPFFAEITKYIEYYAYLKGYKVLICNSYLDGHKEKEYIKMLKRHQVDGIIMGSHTLNVEDYKSINLPIVALDRYISEDIPCITSDNFTGAIMATKLLIERGCKYLAHISGPLELNTPANDRYYGFLKVVREKGIKHVVVETKLNKFEIEEYQKIIKDLFEKHPQIDGIFASSDLIAATVIRMADRFKKNVPKDLKVVGFDDIGLASLLRPSLTTIRQDKDKMAQKLIEVLIDKIEGKNAESKYILPISLIERESTKIK
>NC_011297.1|WP_012548155.1|67430_68888_+|glycoside-hydrolase-family-32-protein
MKNSEILRYARYFVSNNRDKVNNKYRLKFHLMGECGWVNDPNGFIFFNGLYHCFFQYNPFEPFWGPTYWGHAVSKDLVKWEHLPIALAPDEEYDKGGCFSGSAIEKDGKIYLMYTGHVEVGSSEYYQTQCIAYSIDGVNFVKYRRNPVISTKDIPENASKRDFRDPKVFKRDDFYYVVIASQSQKGKGQILLYRSSDLFHWEYVNVILRNDNILEGDVWECPDLFRLGEKDVLLFSAQKKEDSKIISSETFYCTGKMDFEKGLFDLYNCEKLDWGKYFYAPQTTIDQQERRLMIAWMDNWNCPFPTQQEHNWAGAFILPRELFLRGDGLSIKPVREIEKYRKNGMIVEKFLSNDSIYLTFDSECLETEVDLFFITPAQIEIELCSNLNASSNNSIKILYNNVSKKLQLIINDLVFSDERQEVKIDLKGDKLNLRFFLDKSSIEIFVNEGEKVLTNRVYPLEKYNTLKINSEGNCKVYLRKWDLEV
>NC_011297.1|WP_012547747.1|66548_67385_+|carbohydrate-ABC-transporter-permease
MKGNLRVRSIFDVLKFLIILIFSSFYILPFAIVVINSFKKTGEVVLNPLALPKEFKISNYFEAAERMNYFRSFFNTFVITVASIAIIVIFSSMTAYIFARKKWSINKIFFSIMAASMIIPFQSVMIPLVKIYGSLNMLNNMWSLIYMYLGFGTAFAVFLYHGFIKSIPLELEEAALVDGATTFQAFWKIVFPLLKPVTTTLIILDALWIWNDFLLPSLILISAEKRTLQLSTFYFYGTFTSNYGLAMAALVLTVFPIIVVSLFMQKYIIAGIVRGAIR
>NC_011297.1|WP_012547878.1|65673_66549_+|sugar-ABC-transporter-permease
MSSYFSKTKLFVVFCGISIIAFLTVVIVPFIYGIYLTFTNWDGIHKKYEFIGFSNYIGLLKDQVFKNSFLLTLKYVFFTVIFTNLIAFLLAYLLTSGIKGQSIFRVIFFTPNLIGGIILGFIWQFIFHNALPYLGRHLGISLISESWLATPEKAFWALVLVTVWQYSGYMMMIYIAGLVSIPQDLIEAAIIDGANKFKVLTKIIMPLMAPSFTVCLFLSLQRSFMVYDLNLALTKGGPFKSTELISMHIYNEAFLSQNYGIGQAKAFVLFITVAIITLIQVYLSKKAEVEL
>NC_011297.1|WP_012547482.1|64287_65571_+|carbohydrate-ABC-transporter-substrate-binding-protein
MKYKRLLISIFLVLFLINLGGGLFASSTKVKITFMSTKGEINQQLEEVFKNFSKDYPNITVELIPVGAGQSPFEKLSTMYASGNAPTIAMIDPNDVEKFKDNFLDLSNEKWTKDALKGVLDDVTFEGKVYAFPFALEGYGLIYNKQLIEKAVGKFDPNTIRTRFSLERLFKNLEAKKVTPVVISPLDWSLGAHFITIAYATQSRDYGAVKKFIADLRAGKVDLVNNKVFNDLLDTFDMLRKYNYLKDSPLAGTYEQGAQLLAQDKVAFWFMGNWAWPLIEEVNPKNRDYGFVPVPLDNNPNNFFNRSIVALPTKMLCIDTKNNSKEQQEAAKTLLNWFVYNENGQKNWVYGLNIIAPFSNVKITPNDPLAKSIVEYAKAGRTFKIPYAILPSDHWPIIGAYMQKYLAGRMDRKQLLTEIMNYWTKAK
>NC_011297.1|WP_012548576.1|63515_64022_-|flavodoxin-domain-containing-protein
MPKVLILYDSVTGNTKKMAEEVAKGVQEVEGVEVVIKHVDEAVPEDLLNFDGIIVGSPAYCGTLTWKLKKFFDESVRVAWGKVKGKIGAAFASSGGLGGGNEATLYSILTVLMNYGYLVFGLPDYSAPGVTAHYGAVSVGYPKEAEQKACRMLGRHMAEYVKKFCKGE
>NC_011297.1|WP_012548216.1|62396_63512_-|hypothetical-protein
MKIKFLLSPIAYKVDEKLKEAKEYLGKYINLEESEDPDAIVLLTGGTEEEALKYLKDGLFIIPFGKANGLAASLEVQAYAKEKGIKTILITKPNENIMNILKVLDEFKNKKVGIIGKPSDWLIKSGNYDVLKDFGLEPIEISLKEVEENLKEDPSLTDKIWNLSKEKKITKEELLKATKVYTSLKKIIEKYNLYALTIRCFDLAINLKITGCLALSLLNSEGIISSCEGDTEALVTMLFVNKLTNKTPFMANLADIEKDEYTFAHCTIAINIPEYFNLNTHFETLSSVGIEGYINSEKITLLRIGRNKKFTVFTGEVVKRPFEENMCRTQITVKIKDDSFLKNPIGNHFVIVLGDEEEKIKSLEKLGWERV
>NC_011297.1|WP_012548330.1|61827_62334_+|hypothetical-protein
MEIFVKKLLDKGYINDKDFFVIVTEVDYKDDIPLPKGMFKFQPNFLLHIVESVVGRNSDVVLKVYKALESKNLYKFNALFYRSMDIFGYDIEVKGQEFSEDEAENLSLTRKKYTQILEKMNKYIERLKKKLTEYFFEFYKEESEEMILGEEYINYFFGDDEDDDDMEE
>NC_011297.1|WP_012548740.1|61145_61709_-|aminodeoxychorismate/anthranilate-synthase-component-II
MLLIVDNFDSFTYNLYNYFQRLKIKTLVKNRDKINISYISKLNPDYIVLSPGPGRPTDDHILLEIIDVFKNTKKILGVCLGHQAIGVYFGLKLVKAQKPMHGMIDEIIHDEKGVFKNIKNPLKVVRYHSLVLEKDKEGDNIEITAYTKNKEIMGIRHKFYKIEGVQFHPESIGTEDGIRLLKNFLEI
>NC_011297.1|WP_012548068.1|59814_61149_-|aminodeoxychorismate-synthase-component-I
MIELDLRKEKFFIEPFSLYFLLKEDYSILLESNYFHKNFGRYSFIFLSPKEILICRDNDDAEDFLNKLSAEIEKKKKKNEDLIFNGGFVGFLSYDFGVDLYKIPRKKNPLNHKAFFGYYENFIIFDHLEKKILIPSEIYKDLKEIINSLKSSSYKDYKFKEHIVYNFFTNFKKDEYIEAIRKIKNYIYEGDVYQVNLSQRFYFNGKFDPYYIYYKLRKKNYGAFHAFIKLKDSYIISTSPELFLYKKKNKIITRPIKGTIKRAQNREEDKKNKRILMNDTKCRSELLMIVDLERNDFAKICIPESIHVKKLFEIESYSSVFHLVSTIEGSLKKDIEFKDIIKATFPGGSITGAPKLNAIKIIEELEKDPRGVYTGSIGFISNNLNMAFNIAIRTLIVEKDIAYYNVGGGIVWDSKEEDEYEETLAKGKPLLEVLLSSKNYVTKR
>NC_011297.1|WP_012547976.1|73359_73623_-|CRISPR-associated-endonuclease-Cas2
MFVIVTYDINEKRVDKVRRILRRYLSWVQNSVFEGEITIGKLEKCKKELQFVIVPEEDSIYFYIIENKNNYIKNVLGIEKDLDSYVY
>NC_011297.1|WP_012547158.1|73625_74606_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MSRDLFIFSSGTIKRKENTIYLETNNGERKFFPVENIDSIHLFGEIELNTKALNFFAQKNIVIHIYNYYGYYSGSYLPREKNVSGELLVRQVQHYLDEEERMYLAYSFVEGALFHMQRNLREYENTNEFVIKISQELENAKNCKSIQELMGCEGRARDVYYNAFNLILKSKFFFEKREKRPPTNPINALISFGNSLIYSTVLSEIYKTQLNPTISYLHEPRERRFSLSLDLSEIFKPLIVDPIIFKLINNNMLKDEDFDQDVNYCYLTESGRKKFLKEFDSKMETTIKHRKLGRSVSYKFLIRLECYKLIKHLLKDEIYKPLKAWW
>NC_011297.1|WP_012548768.1|74610_75123_-|CRISPR-associated-protein-Cas4
MVDLLQNLRITGIKINYLFVCERKLWLFDRGIGMEETSEKVFLGKLLDEFSYPKEKKKKILIDNLICIDILNEEEIREVKYSDKLEEPNKMQILYYLYYLKKLGIRKKGILNYPKQKKREIVELTPEKEKLIEDAIKKIEEVVGRENPPPVEKKRYCKKCAYYEFCFIGE
>NC_011297.1|WP_012547914.1|75143_77411_-|CRISPR-associated-helicase/endonuclease-Cas3
MISLGNLDIVYAKTYYENGKIVAETLEEHTSLLLKNLELLKERYYEEIKRVLEKENYNSEKFWEILKIAALYHDLGKINSLFQNKIRELLGKEKIESRFSQEIPHNFLSPALLPKETLSKKIAEYEDIFTLIYAIIYHHYRDLDFNEEYFKDYIKEEVLNKVDHLSWVKKYDENFGNSESLGNEYLWLLRDRGKIENLEKKLKFIMLKGLLYRLDHSSSAHVEIEKERIRNCEKLLISYLIKKPNSIGLKPFQKKAIHLRDKNILLVAPTGSGKTEFAVNWIGNDKAVYTLPLRVSVNAMYERLKEIFGKDKIGLLHGDCAYYGLDEIRTLENDFQEHLHHVTSSRQLSYPITVSTADQIFISFFHFPGYEKIFSIFPYTKIVVDEPQAYTSESLAVIVEGLKRIDNVGGKFCLMSATFYPILRNELQDISEIIEVEASNNSSHFIRYYPEKDIEDMISEIIENYKKGKKVLVITNTVKKAQSIYNLLRSNKELKVNLLHSRFIWKDRNMKEKQIFLDEKSHAPCIWISTQIVEASLDIDFDILFSELAPLDTLIQRMGRVYRKREYSEDIPNIVIAGSLGKPSGKSHVYDSALIDATHNILSEINTKKLDERIKKMLVERLYSLEQLANTKYYKKFRDYQKLLKLEYKAENKLEAERIFRRISNIEAIPVEVYENNKEKLLEIQEKIYSKDALKKLQGLRELKDLTVNIPLEIKDYAQNLISLEKDLELRIFLINLNYDTELGLLPDKNTENII
>NC_011297.1|WP_012548486.1|77388_78090_-|type-I-B-CRISPR-associated-protein-Cas5
MKVLKLKVYQQFANYRKPLSYSFIDTFPLPTYSNIRGWIHRILQAQEYIPLSISIQGTYESIVYDLQTFYKFDRPRPEKKDLIFLPEYKKTIVKSPFYVANLQNVSLILHINMEYSLLEKIKTMLLDTFPSIGRHEDMARIDKIDFVEVKRKDIGIDFYKIKYPIYLKKETADKYNLIGINFKIPFKYRIEENLRYFEKIDVVYIEEGTLFGEVILDSEGDLVELVGDFPGES
>NC_011297.1|WP_012547637.1|78076_78976_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKKGGLTLTIIFEAMSLNYGEGVGNISELKKLSREGYSLTYMSRQALRYELFKTLKNMFGMQDAPLTPTKEKGVIQFKEEANIKDYEEVDFFGYMKTLKGKGALTRSAVVKFSPAISLEPYYNDLEFGSNKNFADRSNSDPNIFQLEQHYSLYTYTVTIDLDRLGKDENENIELDKKTRIERAQKILEALKVMNREIKGRIENLNPIFVIGGIYPVKNPFFLNRVKICLDSSTKRFKINTELINSVLNISINGISIKDYTHIGLLKGYWENEKEFENAKDINTFFKDIKEGVQEFYESA
>NC_011297.1|WP_012548304.1|78991_80668_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MERVYLSDWLFNAGIIGFLSILFEGKEDLKEGENTFSNGKNIYIGKNYIEFEREVLEGFSDKYFNSAYERYRRTDRFIDYCREILEDIKKETLYKDIEKSYEELKNRIDNFSKLKDFLKKDFQLPPLNEVKRNPELFREYILKVLEVAEKNKQILIENDVKIYLGKIYGQKSFLNRTITSNYKNKFKEDFEDKIINDTKKIKRSILCINCGERYAKKDTSFDTGISPFTGVNTDALNFFWNFNAKLPLCEICELIYFCTFRGFTESVLENKYFFVNSDTSVIDLYKKNLLLQEKLKKNLTENIFVEFFSELLLREEYEKSTHRLQGIAFIEIDLTNKDVLPKVFSFNISRAKAEFLKEHAEKNFKNLINIRYSIKRYSIKDSIKEIIKNVTLEFLEKILSNTLSYGYLSFLEYLLLESIKGNKDVKTYYSPIHLNILNIIIEDYIQKFKKYERGEKMSSKNEEQLWFMFKKGEEIANKLISENSENKIPSLTYKLLSCLRTEDVHSFMNIILRLYMTYSLEVPSLLVKALNEKDLFLAYGYSFVNGLLSKYTSQNNEN
>NC_011297.1|WP_143707889.1|80669_81413_-|CRISPR-associated-endoribonuclease-Cas6
MSFIKEALKATDFGKEYFKKIYQYEEEGEIKNNKAGKPFCFAVRFLHDKEEFKKDKDVLYIKSPIELYISSVDYEFLINLYNGLLSKKLYPFKMGLGGISKRNNIILLRERKIKEDKVIFKTLSPILIEDKNDKPLLPIDVENNQPLPEESEKFVYFLKELNYISDSILKSIRGQGLKIGLKFKPLKVRKEVVKHRVREKNIEPKLYTFTCFSGTFELSGDPEDLNWLYQLGMGLRRAQGFGMVEVV
>NC_011297.1|WP_012547938.1|81673_82864_+|iron-containing-alcohol-dehydrogenase
MKENLNFSYFIPTKIWFGPGSLEKLREEKLPGRKALIVISAGGSMKRLGYLDRLTDILKSKGVEYVVFDKILPNPIKKHVMEGAQIAREEKCDFVIGLGGGSSIDSAKSIALMAKNDGDYWDYIVGGTGKGKKPEKGALPIVAITTTAGTGTEADPWTVITNEETNEKIGYGNEYTFPTLSIVDPELMLSVPPHLTAYQGFDAFFHAVEGYIANIATPVSDLYALKSVELIAKYLPVCVKNGSDLTARTYVALANTLSGFVESTSSCTSEHSMEHALSAFHPELPHGAGLIMLSEAYHTFFASKIPERYINLARAMGVDVDSLPEEERPFAFVKALKKLQEECGVANLKMSDYGIKEDEIEKLAKNAMETMGGLFEMDRYKLSFEEVVEIMRKAYK
>NC_011297.1|WP_012547321.1|82943_83984_+|glycosyltransferase-family-2-protein
MRGVLYFLSWLIGWIYYRNLRFLKREGEISGDYKISVIIPARNEEENLGKLLSLLKNQTYKPYEVIVVNDNSEDDTEGVGERNGARVISLYEEPPEGWVGKNWAIWNGYLESRGDILLFLDADVEPSSEFIEVMLSSYERYGGLISCWPYQRFEKFYEHLNFIFNIGAVITMCAIKKEGAFGPAMMISREDYERVGGHKEVKDKVVEDLHFGNLCIKKGIPVNNFLGGEYIKFRMYPKGLMDLIEGFSKNSSQGVMSLSFSKFLYLLIWFYGVFGSFAFENPINLYYLLFSFQFYVMTRRLGDYNLIDSVIYPIHFMFFIAVLIYSSIKTFLFKSVSWKGRKINVG

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Crispr_ID: NC_011297_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011297_3

178426-182925

TypeIII

Consensus_repeat	Method
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CRISPRCasFinder
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CRT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	PILER-CR

67 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6,WYL

The CRISPR arrays of NC_011297_3

>merge|NC_011297|3|178426-182925|CRISPRCasFinder,CRT,PILER-CR
AATTGTAGCTTTCCTATGAGGGTATTAAAACAAATTTTGTAGCGTTTATGTAGTGTTAACGGGTTTGTAGCGTGCCTATAAGGGATTGAAACCTGTGAGGTGAAAAGATGATAAATACAAAGCTTTTTAAGTTTGTAGCGTGCCTATAAGGGATTGAAACTTTGTCATTGCTATCCCTCCTTTCGATGAAATAATCGTTTGTAGCGTGCCTATAAGGGATTGAAACTATAAAATGAAATAATCAAGAATAGTTTCTGTTTCTTGTTTGTAGCGTGCCTATAAGGGATTGAAACATGTTGTCTATTTTTTGCTCTAGCTCGTCCAGCTTCCCGTTTGTAGCGTGCCTATAAGGGATTGAAACCAAAGTGAAACAGAGAAATATAAAGCTGAAAAAGAAGCGTTTGTAGCGTGCCTATAAGGGATTGAAACTCCTCTACACCTCTCTCCCCTACAAGAATGTCTGGAAGTTTGTAGCGTGCCTATAAGGGATTGAAACTTGTATCGCCTCCCATCCTTAGTTTTGCTCAGTTTTAGTTTGTAGCGTGCCTATAAGGGATTGAAACCCCCATCCTCTTCTACATCCACAACAAGTTTGCCAAGTTTGTAGCGTGCCTATAAGGGATTGAAACAACATTAGCATTAATAAAATCTTAGCCACTTGGCCCCGTTTGTAGCGTGCCTATAAGGGATTGAAACCTTCGAAGGTTTGTTGCAAAAAACTGAAGGAAGCTGGTTTGTAGCGTGCCTATAAGGGATTGAAACAGCTAAAATTTGAAGAAATAGTTGGAGAATTAATTAGTTTGTAGCGTGCCTATAAGGGATTGAAACGAATTCACCATTCTATTCACTGTTTTTCTCTACCTCCGTTTGTAGCGTGCCTATAAGGGATTGAAACATTGGAGGTAGAGTTTGAAGTAAGTAGAGACAAGGTGAGTTTGTAGCGTGCCTATAAGGGATTGAAACACTGATCCAATTCTCTCTCTCTTCTTACTATCATCGTTTGTAGCGTGCCTATAAGGGATTGAAACTTGCGTCTGAGACAATTGGTAAAACATTCTGAGCAAGTTTGTAGCGTGCCTATAAGGGATTGAAACGGTACAGTTAGGAATGAATATGCAAGGCACTTTTAACGTTTGTAGCGTGCCTATAAGGGATTGAAACATTCTTCTTCCGTTATCTGCTCGAATATTTTTTGTAGTTTGTAGCGTGCCTATAAGGGATTGAAACGGATGGATGCAGGTAAATTTCTAATTGTAGGCTTTAAAGTTTGTAGCGTGCCTATAAGGGATTGAAACTCCGTGTGTACAAAAGATTGTGTAGCCTATTCTTTTGTTTGTAGCGTGCCTATAAGGGATTGAAACTTTTGGAGAACCAAAAAGAGCTAAAACATATGATTGGTTTGTAGCGTGCCTATAAGGGATTGAAACCTTCTATAAGTTCTTTAATTGCTTCCTTAATCTCTTGTTTGTAGCGTGCCTATAAGGGATTGAAACTTGCGTCTGAGACAATTGGTAAAACATTCTGAGCAAGTTTGTAGCGTGCCTATAAGGGATTGAAACACCAAAAAGATGCAAAAAGCAAAAAAATGGCATGGAGCGTTTGTAGCGTGCCTATAAGGGATTGAAACAGTTTTTCGATACGATGTCTATGCCTTCAATATCAAGCTTAAACAGTTTGTAGCGTGCCTATAAGGGATTGAAACTTTTCCACTGACCAAACATTATATGTTAGTGGCATAGTTTGTAGCGTGCCTATAAGGGATTGAAACCTGGTAGGACGTTAAGACTATATGAAAATCTCTTAAGGTTTGTAGCGTGCCTATAAGGGATTGAAACGTTTGTGGCGGATAATGACCAAATTTCCATATAATTTGTTTGTAGCGTGCCTATAAGGGATTGAAACTGCAATACAGCTTGCGAAATTAGAAGCAATTGCAAAGGTTTGTAGCGTGCCTATAAGGGATTGAAACAGCCCTCTCCATTCTCTATCCCATTCTCCAAAATCCAAGTTTGTAGCGTGCCTATAAGGGATTGAAACTCTCTCAGGCTGGTGGAAAAATCACAAGGAATTATCGTTTGTAGCGTGCCTATAAGGGATTGAAACACCTAATAGCAAACGAATATTTTGACACGCCAAGCGCTGTTTGTAGCGTGCCTATAAGGGATTGAAACGACACTCCCAACTTTTTCCGAGTCTCAGACCTAAGAGGTTTGTAGCGTGCCTATAAGGGATTGAAACGAGCGTGCGGTCTTAAAGTCGTCGTATATTCTCTGCAGTTTGTAGCGTGCCTATAAGGGATTGAAACCAATACAGAAAAAGATAAACTTCAGGAGGGTAGTAAGTTTGTAGCGTGCCTATAAGGGATTGAAACCGTCTTGCCTGTTGCTGCGCAATTAGGAGTATCTTTGTTTGTAGCGTGCCTATAAGGGATTGAAACTTTCACACTTGGTTCTGGTGCAAGAGCGCTTTACCCAGTTTGTAGCGTGCCTATAAGGGATTGAAACGCAGCAGAGGCAACCGCAATAATGATAGACATCGTGAGTTTGTAGCGTGCCTATAAGGGATTGAAACGAATCTTTCTTAAGCATCTCCTCAAGGCAAATAGAGTGTTTGTAGCGTGCCTATAAGGGATTGAAACAGTTTGAAGGAAGCTTCATCTTGTAGCCTTTTTATCTGTTTGTAGCGTGCCTATAAGGGATTGAAACGTTTTTTAATCGCTTTTTAGCTTTCAGGTTTTTGCTTGTTTGTAGCGTGCCTATAAGGGATTGAAACATATTTCTATAGAAGCCCATGGATATCGCACCTCCGTTTGTAGCGTGCCTATAAGGGATTGAAACGTTTTTCTAGGAGTTCTACAACATCGTTTGCAAACTGTTTGTAGCGTGCCTATAAGGGATTGAAACCAGGCTCGATACTTACCCATGTTTTTATGCCTCTCTTGTTTGTAGCGTGCCTATAAGGGATTGAAACTTTAGCTGGCAATAATCTAAACAATTTTTAAAATCTGTTTGTAGCGTGCCTATAAGGGATTGAAACTTATCTCCCTCGCCACTGAGAATGATATCTTCCCCTCGTTTGTAGCGTGCCTATAAGGGATTGAAACCTGGTAGGACGTTAAGACTATATGAAAATCTCTTAAGGTTTGTAGCGTGCCTATAAGGGATTGAAACGTTTGTGGCGGATAATGACCAAATTTCCATATAATTTGTTTGTAGCGTGCCTATAAGGGATTGAAACTGCAATACAGCTTGCGAAATTAGAAGCAATTGCAAAGGTTTGTAGCGTGCCTATAAGGGATTGAAACATTTTCTCTTTTCCAAAGCACGCTTTTCCAATTCACGCGTTTGTAGCGTGCCTATAAGGGATTGAAACATGGAAAAAAATGCAGAAGCCTCTCAAACATCTCAAGTTTGTAGCGTGCCTATAAGGGATTGAAACGAGGTAAATATGTATACATTCCATATTTTGCTCAAGGTTTGTAGCGTGCCTATAAGGGATTGAAACTCCTACAACGCTGTCTGCGTCCCATTCCAAAATCTCGTTTGTAGCGTGCCTATAAGGGATTGAAACCACCACTCTATCAGTAGCTCCTTCTTGTTCTGTGGAGTTTGTAGCGTGCCTATAAGGGATTGAAACTCCTTATTTATTATTGTATTCTTTCTTTTTATAACTGTTTGTAGCGTGCCTATAAGGGATTGAAACATAACATAAAGTGAAACTGAGCGAGACATCCCTGAACGTTTGTAGCGTGCCTATAAGGGATTGAAACAGGAGTGGGAAGAGATAGAAGATGAGTACAATATAGTTTGTAGCGTGCCTATAAGGGATTGAAACTAGTAGAAAAGAAAGAATAAAAAGAAAGAATAAATAAGTTTGTAGCGTGCCTATAAGGGATTGAAACCTTGCTGGAAGTGTAATGAGTTTCCCCTTAAAAACTGTTTGTAGCGTGCCTATAAGGGATTGAAACAGGTTCCCATTCCTTTGTCTTAGTTTCGTCTACAAAGGTTTGTAGCGTGCCTATAAGGGATTGAAACAAGGAAACGACGTAATAGAGCTAAGAAAATTTGAGAGTTTGTAGCGTGCCTATAAGGGATTGAAACAAGAATGGATGTAAGAAATTTGTTTTGGAGTTGCTTGTTTGTAGCGTGCCTATAAGGGATTGAAACAACTTACAGGAGCAAAGGGTTATAGAGGAGATGAAGGTTTGTAGCGTGCCTATAAGGGATTGAAACAAGGAAACGACGTAATAGAGCTAAGAAAATTTGAGAGTTTGTAGCGTGCCTATAAGGGATTGAAACAAGAATGGATGTAAGAAATTTGTTTTGGAGTTGCTTGTTTGTAGCGTGCCTATAAGGGATTGAAACAACTTACAGGAGCAAAGGGTTATAGAGGAGATGAAGGTTTGTAGCGTGCCTATAAGGGATTGAAACTCTCTTTCCAAGCTTCAAAAGTAATGAAATCTTTAAGATAGTTTGTAGCGTGCCTATAAGGGATTGAAAG

>NC_011297|3|3|178426-182925|CRISPRCasFinder
AATTGTAGCTTTCCTATGAGGGTATTAAAA	CAAATTTTGTAGCGTTTATGTAGTGTTAACGG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTGTGAGGTGAAAAGATGATAAATACAAAGCTTTTTAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTGTCATTGCTATCCCTCCTTTCGATGAAATAATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATAAAATGAAATAATCAAGAATAGTTTCTGTTTCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATGTTGTCTATTTTTTGCTCTAGCTCGTCCAGCTTCCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAAAGTGAAACAGAGAAATATAAAGCTGAAAAAGAAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCTCTACACCTCTCTCCCCTACAAGAATGTCTGGAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGTATCGCCTCCCATCCTTAGTTTTGCTCAGTTTTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CCCCATCCTCTTCTACATCCACAACAAGTTTGCCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AACATTAGCATTAATAAAATCTTAGCCACTTGGCCCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTCGAAGGTTTGTTGCAAAAAACTGAAGGAAGCTG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTAAAATTTGAAGAAATAGTTGGAGAATTAATTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAATTCACCATTCTATTCACTGTTTTTCTCTACCTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTGGAGGTAGAGTTTGAAGTAAGTAGAGACAAGGTGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACTGATCCAATTCTCTCTCTCTTCTTACTATCATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCGTCTGAGACAATTGGTAAAACATTCTGAGCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTACAGTTAGGAATGAATATGCAAGGCACTTTTAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTCTTCTTCCGTTATCTGCTCGAATATTTTTTGTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGATGGATGCAGGTAAATTTCTAATTGTAGGCTTTAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCGTGTGTACAAAAGATTGTGTAGCCTATTCTTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTTGGAGAACCAAAAAGAGCTAAAACATATGATTG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTCTATAAGTTCTTTAATTGCTTCCTTAATCTCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCGTCTGAGACAATTGGTAAAACATTCTGAGCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACCAAAAAGATGCAAAAAGCAAAAAAATGGCATGGAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTTTTTCGATACGATGTCTATGCCTTCAATATCAAGCTTAAACA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTTCCACTGACCAAACATTATATGTTAGTGGCATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTGGTAGGACGTTAAGACTATATGAAAATCTCTTAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTGTGGCGGATAATGACCAAATTTCCATATAATTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGCAATACAGCTTGCGAAATTAGAAGCAATTGCAAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCCCTCTCCATTCTCTATCCCATTCTCCAAAATCCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCTCTCAGGCTGGTGGAAAAATCACAAGGAATTATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACCTAATAGCAAACGAATATTTTGACACGCCAAGCGCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GACACTCCCAACTTTTTCCGAGTCTCAGACCTAAGAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGCGTGCGGTCTTAAAGTCGTCGTATATTCTCTGCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAATACAGAAAAAGATAAACTTCAGGAGGGTAGTAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CGTCTTGCCTGTTGCTGCGCAATTAGGAGTATCTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTCACACTTGGTTCTGGTGCAAGAGCGCTTTACCCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GCAGCAGAGGCAACCGCAATAATGATAGACATCGTGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAATCTTTCTTAAGCATCTCCTCAAGGCAAATAGAGT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTTTGAAGGAAGCTTCATCTTGTAGCCTTTTTATCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTTTTAATCGCTTTTTAGCTTTCAGGTTTTTGCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATATTTCTATAGAAGCCCATGGATATCGCACCTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTTTCTAGGAGTTCTACAACATCGTTTGCAAACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAGGCTCGATACTTACCCATGTTTTTATGCCTCTCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTAGCTGGCAATAATCTAAACAATTTTTAAAATCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTATCTCCCTCGCCACTGAGAATGATATCTTCCCCTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTGGTAGGACGTTAAGACTATATGAAAATCTCTTAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTGTGGCGGATAATGACCAAATTTCCATATAATTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGCAATACAGCTTGCGAAATTAGAAGCAATTGCAAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTTTCTCTTTTCCAAAGCACGCTTTTCCAATTCACGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATGGAAAAAAATGCAGAAGCCTCTCAAACATCTCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGGTAAATATGTATACATTCCATATTTTGCTCAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCTACAACGCTGTCTGCGTCCCATTCCAAAATCTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CACCACTCTATCAGTAGCTCCTTCTTGTTCTGTGGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCTTATTTATTATTGTATTCTTTCTTTTTATAACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATAACATAAAGTGAAACTGAGCGAGACATCCCTGAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGAGTGGGAAGAGATAGAAGATGAGTACAATATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TAGTAGAAAAGAAAGAATAAAAAGAAAGAATAAATAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTGCTGGAAGTGTAATGAGTTTCCCCTTAAAAACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGTTCCCATTCCTTTGTCTTAGTTTCGTCTACAAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGGAAACGACGTAATAGAGCTAAGAAAATTTGAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGAATGGATGTAAGAAATTTGTTTTGGAGTTGCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AACTTACAGGAGCAAAGGGTTATAGAGGAGATGAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGGAAACGACGTAATAGAGCTAAGAAAATTTGAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGAATGGATGTAAGAAATTTGTTTTGGAGTTGCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AACTTACAGGAGCAAAGGGTTATAGAGGAGATGAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCTCTTTCCAAGCTTCAAAAGTAATGAAATCTTTAAGATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAG

>NC_011297|3|3|178426-182925|CRT
AATTGTAGCTTTCCTATGAGGGTATTAAAA	CAAATTTTGTAGCGTTTATGTAGTGTTAACGG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTGTGAGGTGAAAAGATGATAAATACAAAGCTTTTTAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTGTCATTGCTATCCCTCCTTTCGATGAAATAATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATAAAATGAAATAATCAAGAATAGTTTCTGTTTCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATGTTGTCTATTTTTTGCTCTAGCTCGTCCAGCTTCCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAAAGTGAAACAGAGAAATATAAAGCTGAAAAAGAAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCTCTACACCTCTCTCCCCTACAAGAATGTCTGGAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGTATCGCCTCCCATCCTTAGTTTTGCTCAGTTTTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CCCCATCCTCTTCTACATCCACAACAAGTTTGCCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AACATTAGCATTAATAAAATCTTAGCCACTTGGCCCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTCGAAGGTTTGTTGCAAAAAACTGAAGGAAGCTG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTAAAATTTGAAGAAATAGTTGGAGAATTAATTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAATTCACCATTCTATTCACTGTTTTTCTCTACCTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTGGAGGTAGAGTTTGAAGTAAGTAGAGACAAGGTGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACTGATCCAATTCTCTCTCTCTTCTTACTATCATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCGTCTGAGACAATTGGTAAAACATTCTGAGCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTACAGTTAGGAATGAATATGCAAGGCACTTTTAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTCTTCTTCCGTTATCTGCTCGAATATTTTTTGTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGATGGATGCAGGTAAATTTCTAATTGTAGGCTTTAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCGTGTGTACAAAAGATTGTGTAGCCTATTCTTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTTGGAGAACCAAAAAGAGCTAAAACATATGATTG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTCTATAAGTTCTTTAATTGCTTCCTTAATCTCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCGTCTGAGACAATTGGTAAAACATTCTGAGCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACCAAAAAGATGCAAAAAGCAAAAAAATGGCATGGAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTTTTTCGATACGATGTCTATGCCTTCAATATCAAGCTTAAACA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTTCCACTGACCAAACATTATATGTTAGTGGCATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTGGTAGGACGTTAAGACTATATGAAAATCTCTTAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTGTGGCGGATAATGACCAAATTTCCATATAATTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGCAATACAGCTTGCGAAATTAGAAGCAATTGCAAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCCCTCTCCATTCTCTATCCCATTCTCCAAAATCCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCTCTCAGGCTGGTGGAAAAATCACAAGGAATTATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACCTAATAGCAAACGAATATTTTGACACGCCAAGCGCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GACACTCCCAACTTTTTCCGAGTCTCAGACCTAAGAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGCGTGCGGTCTTAAAGTCGTCGTATATTCTCTGCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAATACAGAAAAAGATAAACTTCAGGAGGGTAGTAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CGTCTTGCCTGTTGCTGCGCAATTAGGAGTATCTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTCACACTTGGTTCTGGTGCAAGAGCGCTTTACCCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GCAGCAGAGGCAACCGCAATAATGATAGACATCGTGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAATCTTTCTTAAGCATCTCCTCAAGGCAAATAGAGT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTTTGAAGGAAGCTTCATCTTGTAGCCTTTTTATCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTTTTAATCGCTTTTTAGCTTTCAGGTTTTTGCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATATTTCTATAGAAGCCCATGGATATCGCACCTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTTTCTAGGAGTTCTACAACATCGTTTGCAAACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAGGCTCGATACTTACCCATGTTTTTATGCCTCTCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTAGCTGGCAATAATCTAAACAATTTTTAAAATCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTATCTCCCTCGCCACTGAGAATGATATCTTCCCCTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTGGTAGGACGTTAAGACTATATGAAAATCTCTTAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTGTGGCGGATAATGACCAAATTTCCATATAATTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGCAATACAGCTTGCGAAATTAGAAGCAATTGCAAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTTTCTCTTTTCCAAAGCACGCTTTTCCAATTCACGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATGGAAAAAAATGCAGAAGCCTCTCAAACATCTCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGGTAAATATGTATACATTCCATATTTTGCTCAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCTACAACGCTGTCTGCGTCCCATTCCAAAATCTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CACCACTCTATCAGTAGCTCCTTCTTGTTCTGTGGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCTTATTTATTATTGTATTCTTTCTTTTTATAACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATAACATAAAGTGAAACTGAGCGAGACATCCCTGAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGAGTGGGAAGAGATAGAAGATGAGTACAATATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TAGTAGAAAAGAAAGAATAAAAAGAAAGAATAAATAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTGCTGGAAGTGTAATGAGTTTCCCCTTAAAAACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGTTCCCATTCCTTTGTCTTAGTTTCGTCTACAAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGGAAACGACGTAATAGAGCTAAGAAAATTTGAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGAATGGATGTAAGAAATTTGTTTTGGAGTTGCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AACTTACAGGAGCAAAGGGTTATAGAGGAGATGAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGGAAACGACGTAATAGAGCTAAGAAAATTTGAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGAATGGATGTAAGAAATTTGTTTTGGAGTTGCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AACTTACAGGAGCAAAGGGTTATAGAGGAGATGAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCTCTTTCCAAGCTTCAAAAGTAATGAAATCTTTAAGATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAG

>NC_011297|3|3|178488-182925|PILER-CR
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTGTGAGGTGAAAAGATGATAAATACAAAGCTTTTTAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTGTCATTGCTATCCCTCCTTTCGATGAAATAATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TATAAAATGAAATAATCAAGAATAGTTTCTGTTTCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATGTTGTCTATTTTTTGCTCTAGCTCGTCCAGCTTCCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAAAGTGAAACAGAGAAATATAAAGCTGAAAAAGAAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCTCTACACCTCTCTCCCCTACAAGAATGTCTGGAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGTATCGCCTCCCATCCTTAGTTTTGCTCAGTTTTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CCCCATCCTCTTCTACATCCACAACAAGTTTGCCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AACATTAGCATTAATAAAATCTTAGCCACTTGGCCCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTCGAAGGTTTGTTGCAAAAAACTGAAGGAAGCTG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCTAAAATTTGAAGAAATAGTTGGAGAATTAATTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAATTCACCATTCTATTCACTGTTTTTCTCTACCTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTGGAGGTAGAGTTTGAAGTAAGTAGAGACAAGGTGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACTGATCCAATTCTCTCTCTCTTCTTACTATCATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCGTCTGAGACAATTGGTAAAACATTCTGAGCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGTACAGTTAGGAATGAATATGCAAGGCACTTTTAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTCTTCTTCCGTTATCTGCTCGAATATTTTTTGTA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GGATGGATGCAGGTAAATTTCTAATTGTAGGCTTTAAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCGTGTGTACAAAAGATTGTGTAGCCTATTCTTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTTGGAGAACCAAAAAGAGCTAAAACATATGATTG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTCTATAAGTTCTTTAATTGCTTCCTTAATCTCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTGCGTCTGAGACAATTGGTAAAACATTCTGAGCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACCAAAAAGATGCAAAAAGCAAAAAAATGGCATGGAGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTTTTTCGATACGATGTCTATGCCTTCAATATCAAGCTTAAACA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTTCCACTGACCAAACATTATATGTTAGTGGCATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTGGTAGGACGTTAAGACTATATGAAAATCTCTTAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTGTGGCGGATAATGACCAAATTTCCATATAATTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGCAATACAGCTTGCGAAATTAGAAGCAATTGCAAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGCCCTCTCCATTCTCTATCCCATTCTCCAAAATCCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCTCTCAGGCTGGTGGAAAAATCACAAGGAATTATC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ACCTAATAGCAAACGAATATTTTGACACGCCAAGCGCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GACACTCCCAACTTTTTCCGAGTCTCAGACCTAAGAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGCGTGCGGTCTTAAAGTCGTCGTATATTCTCTGCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAATACAGAAAAAGATAAACTTCAGGAGGGTAGTAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CGTCTTGCCTGTTGCTGCGCAATTAGGAGTATCTTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTCACACTTGGTTCTGGTGCAAGAGCGCTTTACCCA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GCAGCAGAGGCAACCGCAATAATGATAGACATCGTGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAATCTTTCTTAAGCATCTCCTCAAGGCAAATAGAGT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGTTTGAAGGAAGCTTCATCTTGTAGCCTTTTTATCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTTTTAATCGCTTTTTAGCTTTCAGGTTTTTGCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATATTTCTATAGAAGCCCATGGATATCGCACCTCC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTTTCTAGGAGTTCTACAACATCGTTTGCAAACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CAGGCTCGATACTTACCCATGTTTTTATGCCTCTCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTTAGCTGGCAATAATCTAAACAATTTTTAAAATCT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TTATCTCCCTCGCCACTGAGAATGATATCTTCCCCTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTGGTAGGACGTTAAGACTATATGAAAATCTCTTAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GTTTGTGGCGGATAATGACCAAATTTCCATATAATTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TGCAATACAGCTTGCGAAATTAGAAGCAATTGCAAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATTTTCTCTTTTCCAAAGCACGCTTTTCCAATTCACGC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATGGAAAAAAATGCAGAAGCCTCTCAAACATCTCAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	GAGGTAAATATGTATACATTCCATATTTTGCTCAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCTACAACGCTGTCTGCGTCCCATTCCAAAATCTC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CACCACTCTATCAGTAGCTCCTTCTTGTTCTGTGGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCCTTATTTATTATTGTATTCTTTCTTTTTATAACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	ATAACATAAAGTGAAACTGAGCGAGACATCCCTGAAC
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGAGTGGGAAGAGATAGAAGATGAGTACAATATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TAGTAGAAAAGAAAGAATAAAAAGAAAGAATAAATAA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	CTTGCTGGAAGTGTAATGAGTTTCCCCTTAAAAACT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AGGTTCCCATTCCTTTGTCTTAGTTTCGTCTACAAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGGAAACGACGTAATAGAGCTAAGAAAATTTGAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGAATGGATGTAAGAAATTTGTTTTGGAGTTGCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AACTTACAGGAGCAAAGGGTTATAGAGGAGATGAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGGAAACGACGTAATAGAGCTAAGAAAATTTGAGA
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AAGAATGGATGTAAGAAATTTGTTTTGGAGTTGCTT
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	AACTTACAGGAGCAAAGGGTTATAGAGGAGATGAAG
GTTTGTAGCGTGCCTATAAGGGATTGAAAC	TCTCTTTCCAAGCTTCAAAAGTAATGAAATCTTTAAGATA
GTTTGTAGCGTGCCTATAAGGGATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011297.1\|WP_012548111.1\|186429_186885_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319885
NC_011297.1\|WP_012547829.1\|186898_188152_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NC_011297.1\|WP_012547031.1\|168384_168549_+\|hypothetical-protein	unknown	unknown	unknown
NC_011297.1\|WP_012547725.1\|188941_190564_+\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NC_011297.1\|WP_012547526.1\|173909_176315_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_011297.1\|WP_041723140.1\|168533_169376_+\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NC_011297.1\|WP_012547094.1\|184917_186426_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|223147
NC_011297.1\|WP_012547900.1\|177819_178083_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_011297.1\|WP_158301526.1\|183387_183555_+\|hypothetical-protein	unknown	unknown	unknown
NC_011297.1\|WP_012547353.1\|169448_170231_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
NC_011297.1\|WP_012548538.1\|172185_173139_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	cas7	cd09690_cas7_CAS-I-B	gnl\|CDD\|377458
NC_011297.1\|WP_012547930.1\|170220_172185_+\|TIGR02556-family-CRISPR-associated-protein	cas8b1	cd09672_cas8b1_CAS-I-B	gnl\|CDD\|274199
NC_011297.1\|WP_012547398.1\|183823_184921_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238888
NC_011297.1\|WP_012548317.1\|192218_192557_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NC_011297.1\|WP_012546968.1\|176822_177818_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NC_011297.1\|WP_041723142.1\|192553_193894_-\|ammonium-transporter	unknown	unknown	gnl\|CDD\|274697
NC_011297.1\|WP_012548659.1\|190645_191986_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NC_011297.1\|WP_012547538.1\|173155_173908_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09692_cas5_CAS-I-B	gnl\|CDD\|187823
NC_011297.1\|WP_012548102.1\|176331_176826_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_011297.1\|WP_041723409.1\|188172_188913_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238481

Protein	Function_ID	Function_description	E-value
NC_011297.1\|WP_012548111.1\|186429_186885_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319885	cd10563, CooF_like, CooF, iron-sulfur subunit of carbon monoxide dehydrogenase. This family includes CooF, the iron-sulfur subunit of carbon monoxide dehydrogenase (CODH), found in anaerobic bacteria and archaea. Carbon monoxide dehydrogenase is a key enzyme for carbon monoxide (CO) metabolism, where CooF is the proposed mediator of electron transfer between CODH and the CO-induced hydrogenase, catalyzing the reaction that uses CO as a single carbon and energy source, and producing only H2 and CO2. The ion-sulfur subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons in the protein complex during reaction.	1.3973e-67
NC_011297.1\|WP_012547829.1\|186898_188152_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	2.12588e-94
NC_011297.1\|WP_012547398.1\|183823_184921_+\|hypothetical-protein	gnl\|CDD\|238888	cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type. GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	5.72566e-107
NC_011297.1\|WP_012547725.1\|188941_190564_+\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NC_011297.1\|WP_012547526.1\|173909_176315_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.26938e-49
NC_011297.1\|WP_041723140.1\|168533_169376_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	4.90549e-55
NC_011297.1\|WP_012547094.1\|184917_186426_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|223147	COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism].	0
NC_011297.1\|WP_012547900.1\|177819_178083_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.95855e-28
NC_011297.1\|WP_012547353.1\|169448_170231_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	6.62262e-40
NC_011297.1\|WP_012548538.1\|172185_173139_+\|type-I-B-CRISPR-associated-protein-Cas7/Csh2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.30674e-71
NC_011297.1\|WP_012547930.1\|170220_172185_+\|TIGR02556-family-CRISPR-associated-protein	gnl\|CDD\|274199	TIGR02556, hypothetical_protein_MM_0564, CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.	0
NC_011297.1\|WP_012548317.1\|192218_192557_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	6.31032e-46
NC_011297.1\|WP_012546968.1\|176822_177818_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.63207e-163
NC_011297.1\|WP_041723142.1\|192553_193894_-\|ammonium-transporter	gnl\|CDD\|274697	TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.	3.60662e-146
NC_011297.1\|WP_012548659.1\|190645_191986_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	0
NC_011297.1\|WP_012547538.1\|173155_173908_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|187823	cd09692, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.11554e-36
NC_011297.1\|WP_012548102.1\|176331_176826_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	6.73566e-60
NC_011297.1\|WP_041723409.1\|188172_188913_+\|hypothetical-protein	gnl\|CDD\|238481	cd00981, arch_gltB, Archaeal-type gltB domain. This domain shares sequence similarity with a region of unknown function found in the large subunit of glutamate synthase, which is encoded by gltB and found in most bacteria and eukaryotes. It is predicted to be homologous to the C-terminal domain of glutamate synthase based upon sequence similarity coupled with genome organization data, showing that this domain is found in a gene cluster with other domains of Glts, which are annotated. This domain is found primarily in archaea, but is also present in a few bacteria, likely as a result of lateral gene transfer.	1.1578e-98

>NC_011297.1|WP_012547900.1|177819_178083_+|CRISPR-associated-endonuclease-Cas2
MYVIMVYDVNQKRVAKVLNIARKYLEWIQNSVLEGELTEAKFERLKREVELVIDEEEDSVIFYIMRTIKYSERQILGIEKNKREQIL
>NC_011297.1|WP_012546968.1|176822_177818_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MSESIYIFSSGELKRKHNTVYFETSDGEQKYLPIENIRDIHFFGQVTLNKEFLEFVSQKNVILHFYNYYDYYVGSYYPREHYNSGYMILKQAEHYLDYEKRLLLARKFVVGAIENIKKVLGYYISRGKESLKEKLERIEFLEESAYAEDQVEGLMGIEGNVRDIYYSCFNEITEREEFFIDERTKKPPSNNMNALISFGNSLLYTAVLSEIYKTHLDPRIGYLHTTNFRRFTLNLDIAEIFKPVIVDRVIFSLVNKGAITPRDFEEKLGGIYLKEKGRKLFVQNFEERMKVTIQYKNLGKVSYRRLIRLELYKLEKHLMGEEEYQPYISQW
>NC_011297.1|WP_012548102.1|176331_176826_+|CRISPR-associated-protein-Cas4
MSFINGTLIASYFICKRELWLMAHELIPDQENSFLEMGRFIEEEAYRDEEKGFLIGEMKIDIVKQGDENIIIGEIKKSSRSELSGIMQLSYYLMRLREYGIVAKGEVLIPKERKKIPVEINEEIEGRLIEAIKDINMIISEPYPPKPEKIKYCNHCAYKEFCWA
>NC_011297.1|WP_012547526.1|173909_176315_+|CRISPR-associated-helicase/endonuclease-Cas3
MDRFYSHLERRGEEVDLERSILLKNHLREVGLKTIEYFFFEGGDLKNIGYYIGITHDFGKYTTYFQKRLFEIEHCGDLANHGFISSLYSAYLISRKLEEFKNVEDIKEFLPLVAFFVVYHHHLDLSSLSKLKSNLESSDKKELILKQIEDMKSNSEIINRDLKELELPLLEEFERDLDDVINLLRKRIYQFENKLEEKIKEKIAIFCLVLFSALIDADKKSAGKVRDVERRDIPEDIVEVYKRETFKDNSDEINLLREEIFQKVINKLKEIDISKNKIFTFTSPTGSGKTLTGFAFAVKLRKRIEKEFGYTPRIIYSLPFISIINQNYDVLRNVLSKLPDFEGNSSAYIISHHHLSKVEYEEGDELREVDESLALIESWESEVIVTTFVQLLHTIIGFKNSFLKKYHNIARSIIILDEVQNIPAEYWKLTERIFKLMSQYLNCYIILMTATKPLIFSDGDTLEILDNNEVYFEKLNRVVLYSNVKEQKGLDSLLSWFIDIYDPQKSYMIVLNTIKSSIEFYRMLKEQLSLKEKSIYYLSANIIPKERLDRIHRIKQDLGNNKKPILVSTQVVEAGVDLDFDVVIRDLGPLDSVVQVAGRCNRNFKKENGEIFVFFLKDDKGRSYANMVYQKLTPRITFELFSELESVKESEFIKIINKYFERLRFEKSQEESELIISALNNLRFYEGKEIISVSSFELIKEKGIVYPVFIEVDEKAMETWSKFKSIISDDSIDRWEKKKLLLNIKSQLEEYIVNVRVNKNEPWIFDIAFDQNIGYVANKDIPEYYDSETGFKKTELSSVIF
>NC_011297.1|WP_012547538.1|173155_173908_+|type-I-B-CRISPR-associated-protein-Cas5
MKVIVFDLLGKMAHFRKFYTNSSSLSYHFPPRTTIVGLIAGLLGYERDTYYEIFSTDKAKITIGVKSPLRKILQVVNYVWAENVKQLNQSRGQHTQIPLEIIFPQDMKEDICYRIFFHHKDEKIMEDLKNKLVNFDFCFPPYLGITEFVGKVDFIGEGMAEISRADKVLIDSVVSVDYIKKNSLILEPQVGAQYVKEKMPLSFNKDRLLEDPPKEFIGEIKIGKISLKGNVEYYKVEVRDLVQNVIFMED
>NC_011297.1|WP_012548538.1|172185_173139_+|type-I-B-CRISPR-associated-protein-Cas7/Csh2
MGVYSKNSEILFLYDAKLTNPNGDPDDENKPRIDYEKEINLVSDVRLKRYIRDYLESIGYEIFVAKVDGEIVDATERLRRFFEKENKKVNLNKLTKEDVDFILSKLIDVRLFGATMPIKAGEEGKGASSNFTGPVQFTWGYSLNKVELVTSNSITSTFAGRDEAGKGQYGTFGKDWRLYYSLIAFYGIVSGYRAKYTNLSEEDVALLDKALLEAIPQMASTRSKIGQKPRLLLRIEYSKPYFLGDLRNKVKIDKEEGLRDITDYELDITNLKEVLEQNKDRIDKVYVFQDPELRIKGGKLFDQLKEVLGNKVVELTV
>NC_011297.1|WP_012547930.1|170220_172185_+|TIGR02556-family-CRISPR-associated-protein
MLTNIKEIGKMVRTTSAEDFVSNLVEYDEDLMVDEKENRKFLVIMDFDLESEKINLYRREVDRQVLEEYLWVGNAKGNNPQDRLTTNNVSYLICSAGAGNGSSIVNLLNNLKGGTLKNLLEEVKNKFFMSLPLEKVRYCLDLSKIGNGEIIDIKPPESSDEKKYLKDIENLWKKKFLEIIEEKLGLKEKEISLFTVTINGMKPSEFKDYKEYIENSLIEESFEESFEGTCHVCGERSEITYDTTKFPVKFYITKLITFSSDFEGKGVKKGFSKNFSLCRDCYKDIILGIKFIQNNLDTRLGNNDLWIIPGLFFNPLGKELKESWIRTSREFVKSTFNLQEFLSFEERIQRNLDEYREFEEIADYGTVDLLFYERSKEAFKIKEYIKDVHLRRVEKIRNSIREVENLGREIFGEGENWFLGLEDIYFLIPIRRGKVSEYKKMLDLYEDIFLEHRIDKDILIDYFVDLAKVYRFEKFSQYNIKMVKNTDMGMSLSILKTNLLLKLFEKLNLITGGDRMPEFADDVLDKDLQEYISKMQYSEEEAALFLLGYLIGEIGYEQIRGADLSAKKPILNKINFNGISAKNLINLANEVFEKLDQYKIRGYNEKTFSVMKSLMDKHIKSWKLSEQENVYYILSGYAFNTYKRVKSVKGKEDQ
>NC_011297.1|WP_012547353.1|169448_170231_+|CRISPR-associated-endoribonuclease-Cas6
MRIKIVYETLDGKDIILPCHYNYAIQGLIYQTFSPEIAKWLHDVGFLLGKRKFKLFTFSRILEKGKIIVKDNDNKYLNFGRKITFYFSSPIDDIVGNLGERSFREREFSIGKNKVYISQLEILLPPKIEEKVYIKMLSPLTIYSTFLKNGSRIVHFYRPYENEFSKLIEENAKKKLKIVHQNSYDGGSLSIKPYKFSLEKNRKVVIFKNTPIEGWTGVFELSGDPALIAITYEAGLGNKNSEGFGMWEIWREKEESKDAD
>NC_011297.1|WP_041723140.1|168533_169376_+|WYL-domain-containing-protein
MYILLRDFFNIPIEYDRVKKGYYLAEKVSFPIPKLSEGELLSLLISAKLVEEFRNTPLEDSLKKLAKKLEALFPEEVTIGGKELEMMLSVSLSPIKMRVDIKDTFEKIFSAIKNRKRIIIKYYSIERDELTERKVDPYHIYNYEGVWYFCGFCHLRKELRDFALDRIQSIDITSEKFEFPKDFNPKEYLSKPFRIYKGSFIKMKVLFDSYQARWIKERIWHPNQKVEELETGEVILEIEGNSEELKRWILSYGKHAKVLEPEELREELKKELKEVLKNYG
>NC_011297.1|WP_012547031.1|168384_168549_+|hypothetical-protein
MGRDKRGNKINSPSVLAKLYKLYLLIENGSYPSISYLQKSLELSEKTIDRYISY
>NC_011297.1|WP_158301526.1|183387_183555_+|hypothetical-protein
MSRISLVSSFSLAAKKLIAFVGIDLAIKESWKYKKSLKFLKEKNRHLKLHKKLFD
>NC_011297.1|WP_012547398.1|183823_184921_+|hypothetical-protein
MLREGEIRIPSACGLIGYINRKRKLISGYHIVSAMTVMRERGNGLGAGFAGYGIYPDREDYYAFHLFYEDTKAKEETSKFLYEYFDVVQEEKIPTRKVKTIKNPPIIWRYFLKPKEEYLAEEEILEEDFVVEKVMEINTKIDGAYVFSSGKNMGVFKGVGYPEDIGEFYRLEEYKGYIWTAHTRFPTNTPGWWGGAHPFSLLDWSVVHNGEISSYGTNARYVEMFGYKCTLRTDTEVITYIIDLLIRKHKLPWDIVAKILSAPFYSVIERMDEEEKKKMKAMRAVYQSCLLNGPFAIIVGFSQGIVALNDRIKLRPLVAAEKGEVLYVASEEAAIREICSNPDKVWMPKGGEPVIGLLEEVGVLV
>NC_011297.1|WP_012547094.1|184917_186426_+|4Fe-4S-dicluster-domain-containing-protein
MKTLYESDFIVIRDETKCIRCKVCVRQCANDVHEYDEEEDRIISDNSRCVGCHRCVALCPTKAITIMRNPLEFRENYQWNARAIKDIYKQAETGGILLTGMGNDKAYPIYWDKLLINASQVTNPSIDPLREPMEIKTFIGRKPEKLEFDEEGRLLTKMPPQLELEVPVMFSAMSFGSISLNACESLARAAVEVGTYWNTGEGGLHKKLYPYKHRAIVQCASGRFGVDIEYLYSGAAIEIKIGQGAKPGIGGHLPGEKVGEEVSATRMIPIGTDALSPAPQHDIYSIEDLRQLIFALKEAVNYEKPVGVKIAAVHNVAAIASGIARAGADFIAIDGFRGGTGAAPTRIRDNVGIPIELALAAVDSRLREEGIRNQVSIIVAGSIRNSADVIKAIALGADAVYIGTAALISLGCHLCQNCHTGKCNWGIATQDPKLVKRLNPEIGARRAANLLKAWAHEIKEMLGGMGINAIESLRGNRLMLRGVGLTEKELSILGVKHAGEGM
>NC_011297.1|WP_012548111.1|186429_186885_+|4Fe-4S-dicluster-domain-containing-protein
MLVKTKKRIYPKEEVCIGCHLCEIYCVLAHSGTRDLIKAFKKKDRPSPRVIVEEKEGVHVTFALQCRHCDDPLCIKACITGAMHRDENTGAILCDEEKCVGCWSCILVCPYGAIRRGENKKVASKCDLCIEKGDPICVQNCPNSALELVEV
>NC_011297.1|WP_012547829.1|186898_188152_+|NAD(P)/FAD-dependent-oxidoreductase
MKYVIIGNSIAAAGCIEGIRKIDNENEIIVISQEPYHIYSRPLISYWLSGKINEEKIYYRPWDYYEKYRVKPILGRKVERVDFDEKKLYLDNNDEIYYDKLLIATGGKPFIPNILGLAKKNVFTFIKFDDVKAIDKAICPGAKAVVVGGGLSGLKAAEALIKRGCEVTVIELAERILGSILDDEGAKLVQNELEKYGIKFVLKNSVIEILGEERVEKIKLQTQEEIPADLVIFSIGVVPNVDIFKDTPLKINRGIIVNTKMETNIPDVYAAGDVVEAFDLILGEKRVIPILPNAYIQGEVAGINMAGGDFEYEGSFPINSIGFFDIHMMTGGIVNPKEDCEVLKRLERDRKIYRKICLKDGRILGFIFINSFDRTGMIVDLMKNKVDVSGFKERLLLDNFGFLDLPKEVRREKIWRV
>NC_011297.1|WP_041723409.1|188172_188913_+|hypothetical-protein
MITIDGKGLHYRVLNEMIEEKLKEGYERIKLININGQRYIGAGLTFPDREIEIYGTPGNDLGVFMNGLKIKVYGNSQDGVGNTMNDGEILIYGSSGDIMGYGMRGGKIFVKGNVGYRVGIHMKEYKEKIPVIVIGGTAGDFLGEYMAGGRIIILGLNEDKDENICGLFCATGIHGGVIYLRGRIPDYKLGKEGKLLEIDDNDRKFIEEHVKIFSEYFNIEYDLIMKKDFFKVIPYDKRPYGRLYAY
>NC_011297.1|WP_012547725.1|188941_190564_+|NAD+-synthase
MKVAIAQINPTIGDLKGNLEKIISKIDRAKNLSADLIIFPELSIIGYPPRDLIYNMDLAKAIETSLKEKIAPRSYDIGIILGSPYYEDKNIYNSALFFYKGKLYFRQDKTLLPNYDVFDEKRYFKPASNNIPIKFKNKLLGITICEDIWNDKDYWNRKIYEIDPLEKLASQGIDIIINISASPYYHGKISLRIDMLRHIARKYKKEIIYVNQVGGNDELIFDGTSLVMNKDGSLAWIGKEFEEDFVVIDTNKLSRENITINEDISFIYKALVLGVRDYVIKTGFKKALVALSGGIDSSVTACLAVAALGKENVLGIYMPSRYSSKESAIDAEMLAKNLGIEYRVIPIEKIFSSFIETLNPNNRVFMDNAEENLQARIRGNIIMFISNREGYLVLSTGNKSELAMGYCTLYGDMTGGLSVIGDLPKTLVYELARYINRDREIIPERVLRKPPSAELRPNQKDEDSLPPYHVLDPIIKSYIEDNLTVEEIIKLGYNSELVENVVKKVDSMEYKRRQAPPVLKVTSKAFGVGRRMPIAWRRNW
>NC_011297.1|WP_012548659.1|190645_191986_-|glutamine-synthetase
MTGSFPKTKEEVLKYVKDNNVYFIEIWFTDILGYLKSFTITAHELEKAFEEGLGFDGSSVRGFTRIEESDMIAFPEPETFTILPWRPKDKKVARMFATILEPNGKPFEGDPRNVLRRMLAKAKELGFTYYVGPELEYFYLKAPSSNPEVLDWGGYFDLIPRDEAIDLRHQTVSILEEMGIEVEFTHHEVAPSQHEIDFRYKDALTMADIVMTARLAVKEVAYLNGVYATFMPKPLFGQNGSGMHVHMSLFKNGKNAFFDPNDKYHLSDTAKHFIAGLLKHAKEITLITNQWVNSYKRLVPGYEAPVYISWAMRNRSDLIRVPMYKPGKEEATRIEYRAPDPACNPYLAFAVILAAGLEGIEKKYPLPEPIEENVYHMTEEERRKRGIESLPGSLIEAIEITEKSELVRKALGDHVFTNFIENKKIEWDNYRRQVTTYELETYLPVL
>NC_011297.1|WP_012548317.1|192218_192557_-|P-II-family-nitrogen-regulator
MKKIEAIIRPEKLDDVRKALNKIGYSGLMISEVEGHGKQKGIVQQWRGEKYRIELIPKIKIEMVVKDSEVENIIRVIIESARTGEIGDGKIFISEIADAIRIRTGERGENAI
>NC_011297.1|WP_041723142.1|192553_193894_-|ammonium-transporter
MENKVILDTIWVLFTGMLVFFMNLGFAMVESGFARVKNTVNILSKNFIVFAISSLGYLILGWGLMFGDGTPFVGLKGLFFLSGPDNSPATGEAYRGVYSSISWAGVPLLAKFFFQLVFCGTAATIVSGAVAERIKYISFIIFSFIMSMFIYPIVGHWIWGGGFLSKLGMLDFAGSTVVHSVGGWAALVGAILLGPRFGKYADDGSIKPIPGHNLSLATLGTFVLWLGWFGFNPGSTMSADPQAISHIVITTNTAAASAILSSTITSWILLGKPDLGMTLNGCLAGLVAITAPCAFVDIPSSIVIGLIAGFLVVVSVIFFDRIKIDDPVGALSVHLVNGVFGTLSVGIFAKEGVTSFSTVNGLLFGGGLKLFLIQLIGVLSVGIFVLLTSLITWYILKSTIGIRVSLQEEIEGLDIGEHGNSAYPEFLIRKPNISFISVVKPEEVRK

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Crispr_ID: NC_011297_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011297_4

1230930-1231048

Orphan

Consensus_repeat	Method
TGGTCGGGGCGACTGGACTTGAACCAGCGACCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011297_4

>merge|NC_011297|4|1230930-1231048|CRISPRCasFinder
TGGTCGGGGCGACTGGACTTGAACCAGCGACCTCCTACTCCCGAAGCAGGCGCGCTAGCCAACTGCGCTACGCCCCGATTAAAAAATGGTCGGGGCGACTGGACTCGAACCAGCGACCT

>NC_011297|4|4|1230930-1231048|CRISPRCasFinder
TGGTCGGGGCGACTGGACTTGAACCAGCGACCT	CCTACTCCCGAAGCAGGCGCGCTAGCCAACTGCGCTACGCCCCGATTAAAAAA
TGGTCGGGGCGACTGGACTCGAACCAGCGACCT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011297.1\|WP_012548097.1\|1229115_1229778_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
NC_011297.1\|WP_012547155.1\|1221418_1221925_-\|HIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|238606
NC_011297.1\|WP_012547431.1\|1236805_1237594_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NC_011297.1\|WP_012547701.1\|1234650_1236375_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NC_011297.1\|WP_012547125.1\|1231121_1232999_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NC_011297.1\|WP_012547186.1\|1237593_1238640_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NC_011297.1\|WP_012548635.1\|1224748_1228132_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235868
NC_011297.1\|WP_012547670.1\|1234045_1234654_-\|septum-site-determining-protein-MinC	unknown	unknown	gnl\|CDD\|377127
NC_011297.1\|WP_012547563.1\|1228159_1228459_-\|hypothetical-protein	unknown	unknown	unknown
NC_011297.1\|WP_012547890.1\|1223860_1224703_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NC_011297.1\|WP_012548389.1\|1228495_1229128_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|381680
NC_011297.1\|WP_012548796.1\|1233258_1234053_-\|septum-site-determining-protein-MinD	unknown	unknown	gnl\|CDD\|225447
NC_011297.1\|WP_012548747.1\|1236371_1236821_-\|hypothetical-protein	unknown	unknown	unknown
NC_011297.1\|WP_012548209.1\|1238675_1239257_-\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|376812
NC_011297.1\|WP_012547838.1\|1230647_1230920_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|376373
NC_011297.1\|WP_041723563.1\|1222095_1223052_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NC_011297.1\|WP_012546929.1\|1223051_1223867_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NC_011297.1\|WP_012547453.1\|1233003_1233246_-\|cell-division-topological-specificity-factor-MinE	unknown	unknown	gnl\|CDD\|377128
NC_011297.1\|WP_012546980.1\|1239253_1240090_-\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NC_011297.1\|WP_012547113.1\|1229783_1230641_-\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843

Protein	Function_ID	Function_description	E-value
NC_011297.1\|WP_012548097.1\|1229115_1229778_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	4.47124e-111
NC_011297.1\|WP_012547155.1\|1221418_1221925_-\|HIT-domain-containing-protein	gnl\|CDD\|238606	cd01275, FHIT, FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.	3.93663e-57
NC_011297.1\|WP_012547431.1\|1236805_1237594_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	1.1947e-40
NC_011297.1\|WP_012547701.1\|1234650_1236375_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NC_011297.1\|WP_012547125.1\|1231121_1232999_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NC_011297.1\|WP_012547186.1\|1237593_1238640_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NC_011297.1\|WP_012547453.1\|1233003_1233246_-\|cell-division-topological-specificity-factor-MinE	gnl\|CDD\|377128	pfam03776, MinE, Septum formation topological specificity factor MinE. The E. coli minicell locus was shown to code for three gene products (MinC, MinD, and MinE) whose coordinate action is required for proper placement of the division septum. The minE gene codes for a topological specificity factor that, in wild-type cells, prevents the division inhibitor from acting at internal division sites while permitting it to block septation at polar sites.	2.20572e-21
NC_011297.1\|WP_012547670.1\|1234045_1234654_-\|septum-site-determining-protein-MinC	gnl\|CDD\|377127	pfam03775, MinC_C, Septum formation inhibitor MinC, C-terminal domain. In Escherichia coli FtsZ assembles into a Z ring at midcell while assembly at polar sites is prevented by the min system. MinC, a component of this system, is an inhibitor of FtsZ assembly that is positioned within the cell by interaction with MinDE. MinC is an oligomer, probably a dimer. The C terminal half of MinC is the most conserved and interacts with MinD. The N terminal half is thought interact with FtsZ.	5.83071e-30
NC_011297.1\|WP_012548389.1\|1228495_1229128_-\|uracil-DNA-glycosylase	gnl\|CDD\|381680	cd10030, UDG-F4_TTUDGA_SPO1dp_like, Uracil DNA glycosylase family 4, includes Thermotoga maritima TTUDGA, Bacillus phage SPO1 DNA polymerase, and similar proteins. Uracil DNA glycosylase family 4 includes Thermotoga maritima TTUDGA, a robust uracil DNA glycosylase that shares narrow substrate specificity and high catalytic efficiency with family 1, acting on double-stranded and single-stranded uracil-containing DNA. Members of this family possess four conserved cysteine residues required to coordinate the [4Fe-4S] iron-sulfur cluster. This family also includes the N-terminal domain of Bacillus phage SPO1 DNA polymerase. Bacteriophage SPO1 is one of a group of large, lytic, tailed bacteriophages of Bacillus subtilis, and contains hydroxymethyluracil (hmUra) in place of thymine in their DNA. It has been speculated that this UDG domain may help discriminate between hmUra containing SPO1 DNA and thymine-containing host DNA. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil in DNA can arise as a result of mis-incorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	4.58424e-94
NC_011297.1\|WP_012547890.1\|1223860_1224703_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	3.03675e-166
NC_011297.1\|WP_012548796.1\|1233258_1234053_-\|septum-site-determining-protein-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	1.9487e-136
NC_011297.1\|WP_012548209.1\|1238675_1239257_-\|septum-formation-inhibitor-Maf	gnl\|CDD\|376812	pfam02545, Maf, Maf-like protein. Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea.	2.1598e-85
NC_011297.1\|WP_012547838.1\|1230647_1230920_-\|acylphosphatase	gnl\|CDD\|376373	pfam00708, Acylphosphatase, Acylphosphatase.	5.41975e-33
NC_011297.1\|WP_041723563.1\|1222095_1223052_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	8.04707e-179
NC_011297.1\|WP_012546929.1\|1223051_1223867_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	1.65961e-166
NC_011297.1\|WP_012548635.1\|1224748_1228132_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235868	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.	0
NC_011297.1\|WP_012546980.1\|1239253_1240090_-\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	1.17768e-75
NC_011297.1\|WP_012547113.1\|1229783_1230641_-\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	3.52829e-91

>NC_011297.1|WP_012547838.1|1230647_1230920_-|acylphosphatase
MKKYFHAYISGIVQGVGFRYFAYKWAKRLGISGYVRNLRDGRVEVEAEGEEEALKELIKKLEEGPLGAIVERVDVNWGEYGNRFVDFEIR
>NC_011297.1|WP_012547113.1|1229783_1230641_-|polyamine-aminopropyltransferase
MHDYEWYVDLVAEDQMHCYKVEEVIVDLISPYQKIQIIKNPTYGKCLIIDGKMQSAEKDEFIYHETLIHPALILHPNPKNVLVIGAGEGATLRELLKYENLSIVAVEIDPNVVDFAEKYLWEWHQGAFRSDRVRLVFEDGWNFVRDTNERFDVVVLDLPEPYPDTPAYRLYTEDFYKMVYNILNPSGIVVTQAETVQLGQEYKHFNIKKSFSAVFKSSYSYQTFIPSFDGSWGFLIGSRDNLDPFKPVDVINKLISQRIKGELRYYDGETHNHLFHLPKYLRGAF
>NC_011297.1|WP_012548097.1|1229115_1229778_-|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MDFKKFDTPEYEHKRRKLVEILKDEGIKSQKVLNAILKIPRHMFVPQEYLSLSYENEALPIGYGQTISQPYIVALMTEALNLQGNEKVLEIGTGSGYQTAILAELALEIYTVERIKELLEEAKKRLRVLGYNNVYFKLGDGTLGWEEFAPYDRIIVTAASYDIPEPLKEQLKDGGIMVIPIGGRDFQYLYRITKKGDNFYRENLGGVRFVPLKGEYGWKD
>NC_011297.1|WP_012548389.1|1228495_1229128_-|uracil-DNA-glycosylase
MERLTKIDELEILRREAENCKNCSLWQQRTNLVFGEGNPNSSIMFIGEAPGFHEDQQGRPFVGAAGRLLTELIESMGLKREDIYIANVLKCRPPNNREPLPEEIKACFPFLRRQIEIINPKVICTLGRYAAYAILGHSVNISNSHGKDYVVDGKRIFVTYHPAAALYHGKLLENIRKDFEKLKELYELTLKSEEEQKETNKKEKEQLSFW
>NC_011297.1|WP_012547563.1|1228159_1228459_-|hypothetical-protein
MDKEAILKGLDGFSKLAKQDMLMSIHTKDPEYWKKNAEARHDKYKELYKLVEELGLEAAIEKTVEEYKSLKDESDPVVRGKKRALESFFVLVGIDPSQL
>NC_011297.1|WP_012548635.1|1224748_1228132_-|DNA-polymerase-III-subunit-alpha
MSFVHLHVHTEYSLLDGACRIDELIDQALEFNMPAVAITDHGVMYGVIDFYKNAKEKGIKPIIGCEVYVAPGSRFDKKQRTDLYHLILLAKDFEGYKNLIKIVSLSFLEGFYYKPRVDKELLREYSKGIIALSSCLAGEIPSYILQNNLEKAKNAIKEYLDIFGEDFYLELQNNGMEEQEYVNSYLIKLSRELNVPLVATNDVHYLRKEDAEIHDILLCIQTGSKLNDKDRLRFKTNEFYFKSPEEMKALFKDVPDAIENTLKIAEKCNVEIPLNNVILPVFEVPEGETLDSYFERLCWEGAKKRFGEDIPENIRERLSYEISVIKQMGFSGYFLIVQDFVNYAKSRGIPVGPGRGSAAGSLVSYVLGITNIEPTRWGLIFERFLNPERVTMPDIDIDFCFERREEVIEYVRNKYGKEHVAQIITFGTMAARASVRDVGRVLDVPYNEVDRIAKLIPPNTSIEEALNTSEELRNLVENNPQAKRIIEIAKRIEGNARHASIHAAGIVISKDPLMEYVPLQVMNGTDVVTQLPMTNLEELGLLKMDFLGLRTLTVIYDTIKKIKENYGIEIDINNISLSDEKVYELLQKGETIGVFQLESRGMRNLLRDIKPEKFEDLIAVLALYRPGPLGRLESYIKRKRGEEKVEYMHPALEPILAETYGVIIYQEQVMEIAHRLAGFTLGQADVLRRAMGKKKPEVMEEQRGIFVKGAVERGIPENVAIEIFEDMAKFAEYGFNKSHSAAYAFVSFQTAYLKAYYPKEYMASLLTSVKNSTTKLSKYIAEAKRIGIKILPPDVNESVVDFTVTPQGIRFGLSAIKNVGESVAEAIVEERSRGRFKSIFDFIKRLSSKVINKRALESLIKSGAFDSFGYSRRALLENIDKILESAQVMKRAHIGQVSLIDLESLPQEEIINNMPEFSIDEILEMEKEMLGFYVSYDPQEELRKISEKLFDYTIDDLVEVESGSQVIVPGILKNVREVIDRKNQKMLFATLEDFTGEAEITVFSSVYGNYKDILKEGKKVIISGKLEIDRDESEERIKIIVDQVGDLESNILVIQLDNKIGYEVLFKVREILKNKKGLVPVIIRFDEHAILTAPDFWVFYDEELRKNLESLRKYGIECRIESINKLL
>NC_011297.1|WP_012547890.1|1223860_1224703_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MFKDWLKKDDKNKYRDIPDGLWIKCPQCSQIIYSKDWNENYKVCIKCGYHDQLNAYERIDLLIDYGTFNELDKNIVPIDILGFTDTKSYTQRLKEAQEATGLKDSIVTGKGEVNGIPVYIMVMDFRFIGGSMGSVVGEKVVRIAERAIVDKIPVVAVIASGGARMQEGLFSLYQMAKTSAAIGRLGKAKVPYISILTHPSTAGVLASFGSLGDVIIAEPGALIGFTGPRVIEQTIKQKLPEGFQRSEFLLEHGMVDMVVERKKLKSVLYLILNHLWRKVW
>NC_011297.1|WP_012546929.1|1223051_1223867_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MVKLSPWERILIARHPKRPTFIDFLNELFDNFVELHGDRLFGDDPAIITGLGTFENESVVIIGQEKGKSIQEKMKRNFGMPHPEGYRKALRVMKLAEKFSLPVISFIDTAGAYPGIGAEERGQAWAIANNLKEMSLLETPIIVVVLSEGGSGGALGIGVGDYIMILENAYYSVISPEGCASILFRDSSKAPEAAEALKITSEELLKLGLVDEIISEPNGGAHEDFRGTVENLKKSLSKIIRKYKNKDVKTLLEERWIKLRNYGRFLEEEEK
>NC_011297.1|WP_041723563.1|1222095_1223052_-|6-phosphofructokinase
MKRIGVLTSGGDAPGMNSAIRAIVRFGISKGIEVIGIERGYQGLIEEEFRVLHKDDVSEIVQRGGTILRTARSEEFKEEEGQRRAIENLKKHGIDGLIVIGGEGSLKGAYDLFKKGVNVVGIPGSIDNDIWGTDFSIGFDTACNNVIDAINKIRDTAAAHERTFVIEVMGRECGFIAFTSGLVSGADIILIPEVPIDFPYITEKLKERQRKNKKHNIIVVAEGVGSAYFIGKQIEDRLGISTRIVVLGHIQRGGSPSVFDRSIATFMGVDAVKRLLAGESGVMIGWQNNSPVSVPLEEVVKNKKRVSPELYWEVESLW
>NC_011297.1|WP_012547155.1|1221418_1221925_-|HIT-domain-containing-protein
MKRLFCPWRIKYITSEKEKECIFCKKPSENRDEENLILLRGKFNFIILNLYPYNNGHLMIVPYEHTNDITKLSIEVLTEMMELLQISVEALKETMKPHGFNIGFNIGEVAGAGIAEHLHMHVVPRWSGDTNFMFVFGETKVIPEDLQSTYKKLRPALEKLYEEKKKRS
>NC_011297.1|WP_012547125.1|1231121_1232999_-|UvrD-helicase-domain-containing-protein
MDFLKELNKEQLEAVLEIERPVLILAGAGSGKTRVITYKIAYLIKNNIAKPENIVALTFTNKAAEEMKKRINNMLGAKDADKVWAGTFHGFGLYLLKNFGKYWSLSPYFVIYDENDQEDLIKDILKDLNRAKDYNARDIKEKISRLKDQLITPQEFSSLISNSFDEIVLEVYKRYEKELRRNNALDFADLLLYSIRLLQEKPAICGFLQDKIEYVLVDEYQDTNKAQYELFKIIVLDKQKFSVVGDDDQSIYSFRGADYQNIFRLEKDFKNLRVIFLTKNYRSTQQILEIANVLIANNDKRYPKELWSDKKDGTYPVLFRALNEEDEANFVARQIKLEVAKGRRWSEIAVLYRTNRQSRSFEEALIRNNIPYKVIGGMSFFDRKEVKDIVAYLNVIYNPNDIVSMKRIINVPRRGIGDATFNMIREYYNKGYSLLEAVKEVSKIKKEVKSFYELWTYLLVLKDSLTLRDLISTIINKTNYLSEFENQEKKELENRMENLMELMDFADNFSGKAQDTLGEFLTHLSLTNSKLESTLEEGKVSLITLHSVKGLEFEVVFLVGMEEGILPHYNATTKEEIQEERRLCYVGITRAKEKLYLSYAAKRYSRYQEPSRFLEEIYHLLTVKK
>NC_011297.1|WP_012547453.1|1233003_1233246_-|cell-division-topological-specificity-factor-MinE
MLLSTIWGKRVTSKDVAKERLQVVLVYDRAKIEPQLVEKLKEDLMNTVSKYLTFDSDNIKIELSSEDNKSILRIDIPLKD
>NC_011297.1|WP_012548796.1|1233258_1234053_-|septum-site-determining-protein-MinD
MGKAIVITSGKGGVGKTTAVANIGTGLAMRGFKTALVDTDIGLRNLDLLLGLENRIVYNLVDVVEGRCNLRQALVKDKRLNNLYLLPAAQTKEKEAVSIDQMRSLINELKRDFDFVLIDSPAGIEHGFRSAISGADEAIVITTPEVSSVRDADRVIGLLEANGFGEPRLIVNRVRFDMVKNGEMLGVDDLLEILSIELLGIIPEDENLIISVNKGEPIIYGADKYKSGLAFSLIVKRLLGEDVSWDELEKNETFLERIFKFFRG
>NC_011297.1|WP_012547670.1|1234045_1234654_-|septum-site-determining-protein-MinC
MSKIFFKGDLKEGIKIVLDPSLNWDDIRSLIIAEIEEKSSFLKGSSIYVDFQGKEIKEEDWQEFRKEIYDKYGIMLSKELFKLKISNSNTAKIVLGPIRSGKLLNVKDSLLIIGDVNSGSEIICNRNVFVLGKVRGSIWAGYENNDKATIFALELEPEKIQIAGYILDLSKLKKKNNEFGYWVYVEDGEIKISKYSGGKRDG
>NC_011297.1|WP_012547701.1|1234650_1236375_-|penicillin-binding-protein-2
MSKELVFKRIIELGLILILLRLFYLQVYNKDFYADLSERNYLKSMVLPAPRGIIYDRNNNILAENKIVYSLYLIPPYKFEKSKISKLSEIVGVKIEDIQKIYEKISPYMPAYLLKRKLTPKEIILLEANRDSLPSFTINMEFDRSYPYGTIAAHVLGYMGEVSKEELESEEADYSLGEKSGKYGLEASYEKVLRGKKGFRGVSLYASKDKRIITAQKDPIPGKSIVTSIDIELQRVAEEALGEEKGVIIVSNPWTGEILALVSHPSFDPNKFIEGFTKKEWEDLIKNPDNPLNNRAISSLYPPGSIFKLIVALSALENKKVSPDDRFFCPGEYWMGKYIFKCWKKGGHGRLDFIDGIAQSCNVVFFNVGLRVGDRVIEDYARRFFLDSKTGIDLPGELRGFIPSREWKGNKLKEPWYPGDTLNLSIGQGYVLVTPIEIHAMMSIIATEGMLYKPHLVSKIIGVDGSEEIVKPELIGKVNISPSSWSVLKKGMRKVVDEGTGLATRIPGVNISGKTGTAENPHGESHAWFSCFFPSENPQYVVTVFVEHGKSGGGRAAPIAKKVIEYIVKGGIKN
>NC_011297.1|WP_012548747.1|1236371_1236821_-|hypothetical-protein
MSKILTFILVFLLGIFQTQFKIGNVVPDLLLLFFVFLVFKKIYFQGISLLFILVLMALSSASTISIILYWIIIEIIINMWRRSFISIHKSASFFLIISLSVYSFIFWRTGYALGFNYWLDLLKFLSFNLLFFIPFYFLLPEIYSNEEQK
>NC_011297.1|WP_012547431.1|1236805_1237594_-|rod-shape-determining-protein-MreC
MKKDKNIWRLFLFLVFLSIILWGAGYLENLAFWVQYSFNHFFTSLEDFWKDFKSYITVTENLQKEISDLQKEVLNLYKENQNLKLILENIKKREDYLPWLKDLVDRRIEIVYADVVGRDPVKWNLELKINKGYADGIRVGMVVLYKDQVVGRIIKTEKYYSVVRTIYDPNFIIGVTVLETKDQGILRGGYDHLEMSYLFSDHGIEKGNTLITSGTEDNIPYGLKVGYIADLREKAILSFSSIRILPFEDVSNIKGVAVCLRF
>NC_011297.1|WP_012547186.1|1237593_1238640_-|rod-shape-determining-protein
MAFNFLSGLFSKDLGIDLGTANTVVYVRGKGIVAFEPSMVAIRRSDKKVVAVGEEAKKMLGRTPEEIVTIRPLKDGVIADFDAAEKMIRYFIEKVHNKRDFLVSPRMVIGIPSGTTPVERRAVIDTAYSAGARDVLLVTEPIASALGADLPIWEPSGNIIVDIGGGTTEIAVISLGGIVVSTSIKVAGDEMDEAIIHYVKKKYNLFIGERTAEEIKIKLGNVAFGEENKDYMEVKGRDLLTGVPRNIELTSEEIRDALKDTVDIIVESIRETLEKTPPELAADIIDKGIVLAGGGALLRGLDSYISEQIGVSTIVAEDPLLCVVKGTGKIIEEFEKYKQVLSNASENY
>NC_011297.1|WP_012548209.1|1238675_1239257_-|septum-formation-inhibitor-Maf
MKKEIILASNSPRRIDLLKHMGVDFKVVSPNVEEEGNGEKRSPVEVVKKNAIMKVQKVAEDYRNAIIIGADTVVVIDGEIIGKPTNEKDARRILRKLRGRYHFVFSGVAVMETPEDKVLVSVVRSKVKMRDYSEEEIERYIATGEPMDKAGAYGIQGKGALLVEKIEGDYYNIVGLPLVRLNSLLNRLGYSLL
>NC_011297.1|WP_012546980.1|1239253_1240090_-|YitT-family-protein
MRKTIEFLGISFGAFLIALSIDIFLVPNKLVGGGVSGIAIILYHVFKTPVGIVMLLLNIPIFLLGVKVLGLHFGIKTIYGTVILSLFIDLLTLFGLPQVKDPILATVYGGILGGIGLGIVFKYGGSTGGTDILAQVLSHFTGLNLGQALLIIDGIIVLSAGFIFDFVLALYALLVILIQGYAIDLVQQGLSYTKAALVFSDNPREIGEKILKGLGRGVTIFYGKGMYTGKDREILYCVVSQSEVGKLKEIIHSCDPKAFVVISPAHEVLGEGFKSFQR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011297_3	3.1\|178456\|32\|NC_011297\|CRISPRCasFinder,CRT	178456-178487	32	NC_010363	Lactococcus phage asccphi28, complete genome	17816-17847	6	0.812
NC_011297_1	1.1\|46282\|32\|NC_011297\|CRISPRCasFinder,CRT	46282-46313	32	NC_010363	Lactococcus phage asccphi28, complete genome	17816-17847	7	0.781
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	191373-191409	7	0.811
NC_011297_1	1.25\|47877\|36\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	47877-47912	36	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	683004-683039	8	0.778
NC_011297_2	2.20\|72292\|36\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	72292-72327	36	MN694605	Marine virus AFVG_250M225, complete genome	32513-32548	9	0.75
NC_011297_2	2.20\|72292\|36\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	72292-72327	36	MN693384	Marine virus AFVG_25M512, complete genome	21941-21976	9	0.75
NC_011297_3	3.22\|179853\|36\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	179853-179888	36	KC595513	Bacillus phage Shanette, complete genome	48520-48555	9	0.75
NC_011297_3	3.22\|179853\|36\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	179853-179888	36	NC_028982	Bacillus phage JL, complete genome	47745-47780	9	0.75
NC_011297_3	3.55\|182062\|36\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182062-182097	36	NC_019336	Salmonella sp. 40 plasmid p40-95A, complete sequence	8519-8554	9	0.75
NC_011297_3	3.55\|182062\|36\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182062-182097	36	NZ_CP022136	Salmonella enterica subsp. diarizonae serovar 65:c:z str. SA20044251 plasmid unnamed1, complete sequence	82846-82881	9	0.75
NC_011297_3	3.57\|182195\|35\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182195-182229	35	HQ633071	Synechococcus phage S-SKS1 genomic sequence	201133-201167	9	0.743
NC_011297_3	3.12\|179188\|36\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	179188-179223	36	AP013489	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S45-C81	16692-16727	10	0.722
NC_011297_3	3.12\|179188\|36\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	179188-179223	36	AP013764	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C30A-MedDCM-OCT-S40-C140, * SEQUENCING IN PROGRESS *	3352-3387	10	0.722
NC_011297_3	3.12\|179188\|36\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	179188-179223	36	MN698245	Pelagibacter phage HTVC111P, complete genome	19252-19287	10	0.722
NC_011297_3	3.12\|179188\|36\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	179188-179223	36	AP013487	Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S33-C83	2678-2713	10	0.722
NC_011297_3	3.29\|180328\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	180328-180364	37	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	16934-16970	10	0.73
NC_011297_3	3.49\|181663\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	181663-181699	37	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	16934-16970	10	0.73
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	NZ_CP011350	Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence	448313-448349	10	0.73
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	NZ_CP013056	Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence	87374-87410	10	0.73
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	NZ_AP014866	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence	67520-67556	10	0.73
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	NZ_CP010090	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence	392217-392253	10	0.73
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	MK448896	Streptococcus phage Javan278, complete genome	29772-29808	10	0.73
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	NC_017203	Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence	115277-115313	10	0.73
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	NC_020384	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence	119500-119536	10	0.73
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	NZ_CP015152	Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence	115203-115239	10	0.73
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	NZ_CP004861	Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence	77887-77923	10	0.73
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	NZ_CP017214	Borreliella burgdorferi strain B331 plasmid B331_lp28_5, complete sequence	15818-15854	10	0.73
NC_011297_3	3.58\|182260\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	182260-182296	37	NZ_CP010091	Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence	72160-72196	10	0.73
NC_011297_2	2.2\|71111\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	71111-71147	37	NC_005135	Aeromonas phage 44RR2.8t, complete genome	162412-162448	11	0.703
NC_011297_2	2.2\|71111\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	71111-71147	37	AY375531	Bacteriophage 44RR2.8t, complete genome	162412-162448	11	0.703
NC_011297_2	2.2\|71111\|37\|NC_011297\|CRISPRCasFinder,CRT,PILER-CR	71111-71147	37	KY290948	Aeromonas phage 44RR2.8t.2, complete genome	162412-162448	11	0.703

1. spacer 3.1|178456|32|NC_011297|CRISPRCasFinder,CRT matches to NC_010363 (Lactococcus phage asccphi28, complete genome) position: , mismatch: 6, identity: 0.812

caaattttgtagcgtttatgtagt--gttaacgg	CRISPR spacer
caaattttgtagattttatgtagttaattaag--	Protospacer
************  **********  .****

2. spacer 1.1|46282|32|NC_011297|CRISPRCasFinder,CRT matches to NC_010363 (Lactococcus phage asccphi28, complete genome) position: , mismatch: 7, identity: 0.781

taaattttgtagcgtttatgtagtgttaacga--	CRISPR spacer
caaattttgtagattttatgta--gttaattaag	Protospacer
.***********  ********  *****. *

3. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 7, identity: 0.811

-tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
atag-agaaaagaaacaataaaaagaaataagtacaaa	Protospacer
 *** ********** ************ **  *  **

4. spacer 1.25|47877|36|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 8, identity: 0.778

gtctcttctttttaggtgtagctttttgtaaccctt	CRISPR spacer
ttcgcttatttttaggtgtagctttttgctaagctg	Protospacer
 ** *** ********************. *  **

5. spacer 2.20|72292|36|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to MN694605 (Marine virus AFVG_250M225, complete genome) position: , mismatch: 9, identity: 0.75

tgccaaaaccaaaagactttacagaaaaagaagaaa	CRISPR spacer
gaacaaaaccaacagactttacagaaacagatacag	Protospacer
 . ********* ************** *** . *.

6. spacer 2.20|72292|36|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to MN693384 (Marine virus AFVG_25M512, complete genome) position: , mismatch: 9, identity: 0.75

tgccaaaaccaaaagactttacagaaaaagaagaaa	CRISPR spacer
caaaagcaacaaaagactttgcagaaaaagaaaaaa	Protospacer
..  *. * ***********.***********.***

7. spacer 3.22|179853|36|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to KC595513 (Bacillus phage Shanette, complete genome) position: , mismatch: 9, identity: 0.75

cttctataagttctttaattgcttccttaatctctt	CRISPR spacer
ccttaggctcttctttaatttcttccttaatctctt	Protospacer
*.*. .    ********** ***************

8. spacer 3.22|179853|36|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NC_028982 (Bacillus phage JL, complete genome) position: , mismatch: 9, identity: 0.75

cttctataagttctttaattgcttccttaatctctt	CRISPR spacer
ccttaggctcttctttaatttcttccttaatctctt	Protospacer
*.*. .    ********** ***************

9. spacer 3.55|182062|36|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NC_019336 (Salmonella sp. 40 plasmid p40-95A, complete sequence) position: , mismatch: 9, identity: 0.75

tccttatttattattgtattctttctttttataact	CRISPR spacer
gtcagatttgttatagtattctttctttttattccg	Protospacer
 .*  ****.**** *****************  *

10. spacer 3.55|182062|36|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022136 (Salmonella enterica subsp. diarizonae serovar 65:c:z str. SA20044251 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

tccttatttattattgtattctttctttttataact	CRISPR spacer
gtcagatttgttatagtattctttctttttattccg	Protospacer
 .*  ****.**** *****************  *

11. spacer 3.57|182195|35|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to HQ633071 (Synechococcus phage S-SKS1 genomic sequence) position: , mismatch: 9, identity: 0.743

aggagtgggaagagatagaagatgagtacaatata	CRISPR spacer
agattgataaagagatagaagataaatacaatata	Protospacer
**.   . .**************.*.*********

12. spacer 3.12|179188|36|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to AP013489 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S45-C81) position: , mismatch: 10, identity: 0.722

agctaaaatttgaagaaatagttggagaattaatta	CRISPR spacer
aatctttatttgaaaaaatagttggagaagtaaaaa	Protospacer
*...   *******.************** ***  *

13. spacer 3.12|179188|36|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to AP013764 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C30A-MedDCM-OCT-S40-C140, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.722

agctaaaatttgaagaaatagttggagaattaatta	CRISPR spacer
aatctttatttgaaaaaatagttggagaagtaaaaa	Protospacer
*...   *******.************** ***  *

14. spacer 3.12|179188|36|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to MN698245 (Pelagibacter phage HTVC111P, complete genome) position: , mismatch: 10, identity: 0.722

agctaaaatttgaagaaatagttggagaattaatta	CRISPR spacer
aatctttatttgaaaaaatagttggagaagtaaaaa	Protospacer
*...   *******.************** ***  *

15. spacer 3.12|179188|36|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to AP013487 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G19, isolate: uvMED-CGR-C30A-MedDCM-OCT-S33-C83) position: , mismatch: 10, identity: 0.722

agctaaaatttgaagaaatagttggagaattaatta	CRISPR spacer
aatctttatttgaaaaaatagttggagaagtaaaaa	Protospacer
*...   *******.************** ***  *

16. spacer 3.29|180328|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 10, identity: 0.73

tgcaatacagcttgcgaaattagaagcaattgcaaag	CRISPR spacer
aagaagatcgcttccgaaattagaagcaattggaatt	Protospacer
 . ** *. **** ****************** **

17. spacer 3.49|181663|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 10, identity: 0.73

tgcaatacagcttgcgaaattagaagcaattgcaaag	CRISPR spacer
aagaagatcgcttccgaaattagaagcaattggaatt	Protospacer
 . ** *. **** ****************** **

18. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011350 (Bacillus thuringiensis strain YC-10 plasmid pYC1, complete sequence) position: , mismatch: 10, identity: 0.73

tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
tattagaaaagaaagaatcaaaagaagaacaagaagg	Protospacer
** *************** *******..*  *.* ..

19. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013056 (Bacillus thuringiensis strain YWC2-8 plasmid pYWC2-8-1, complete sequence) position: , mismatch: 10, identity: 0.73

tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
tattagaaaagaaagaatcaaaagaagaacaagaagg	Protospacer
** *************** *******..*  *.* ..

20. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014866 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK2, complete sequence) position: , mismatch: 10, identity: 0.73

tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
tattagaaaagaaagaatcaaaagaagaacaagaagg	Protospacer
** *************** *******..*  *.* ..

21. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010090 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB426, complete sequence) position: , mismatch: 10, identity: 0.73

tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
tattagaaaagaaagaatcaaaagaagaacaagaagg	Protospacer
** *************** *******..*  *.* ..

22. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to MK448896 (Streptococcus phage Javan278, complete genome) position: , mismatch: 10, identity: 0.73

tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
tggacttattaaaaaaataaaaagaaagaagaaataa	Protospacer
*.*    *  .***.*************** ******

23. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NC_017203 (Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT281, complete sequence) position: , mismatch: 10, identity: 0.73

tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
tattagaaaagaaagaatcaaaagaagaacaagaagg	Protospacer
** *************** *******..*  *.* ..

24. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NC_020384 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-285, complete sequence) position: , mismatch: 10, identity: 0.73

tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
tattagaaaagaaagaatcaaaagaagaacaagaagg	Protospacer
** *************** *******..*  *.* ..

25. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015152 (Bacillus thuringiensis strain Bc601 plasmid pBTBC2, complete sequence) position: , mismatch: 10, identity: 0.73

tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
tattagaaaagaaagaatcaaaagaagaacaagaagg	Protospacer
** *************** *******..*  *.* ..

26. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP004861 (Bacillus thuringiensis serovar kurstaki str. YBT-1520 plasmid pBMB293, complete sequence) position: , mismatch: 10, identity: 0.73

tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
tattagaaaagaaagaatcaaaagaagaacaagaagg	Protospacer
** *************** *******..*  *.* ..

27. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017214 (Borreliella burgdorferi strain B331 plasmid B331_lp28_5, complete sequence) position: , mismatch: 10, identity: 0.73

tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
atataataaagaaaaaataaaaagaaataataagaat	Protospacer
  .**. *******.************ *****. *

28. spacer 3.58|182260|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010091 (Bacillus thuringiensis serovar galleriae strain 4G5 plasmid pBMB267, complete sequence) position: , mismatch: 10, identity: 0.73

tagtagaaaagaaagaataaaaagaaagaataaataa	CRISPR spacer
tattagaaaagaaagaatcaaaagaagaacaagaagg	Protospacer
** *************** *******..*  *.* ..

29. spacer 2.2|71111|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to NC_005135 (Aeromonas phage 44RR2.8t, complete genome) position: , mismatch: 11, identity: 0.703

ctttcatcttcatcccaatcagcatctttccaatcac	CRISPR spacer
tggtcgatagcaacccaatcagcatctttccattcag	Protospacer
.  **. .  ** ******************* ***

30. spacer 2.2|71111|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to AY375531 (Bacteriophage 44RR2.8t, complete genome) position: , mismatch: 11, identity: 0.703

ctttcatcttcatcccaatcagcatctttccaatcac	CRISPR spacer
tggtcgatagcaacccaatcagcatctttccattcag	Protospacer
.  **. .  ** ******************* ***

31. spacer 2.2|71111|37|NC_011297|CRISPRCasFinder,CRT,PILER-CR matches to KY290948 (Aeromonas phage 44RR2.8t.2, complete genome) position: , mismatch: 11, identity: 0.703

ctttcatcttcatcccaatcagcatctttccaatcac	CRISPR spacer
tggtcgatagcaacccaatcagcatctttccattcag	Protospacer
.  **. .  ** ******************* ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

649371 : 657167

Bacillus_phage(12.5%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012548757.1\|649371_649635_+	stage V sporulation protein S	J9PTX7	Bacillus_phage	4.2e-09	41.2
WP_012547835.1\|649776_649983_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_012547017.1\|649985_650642_+	FAD-dependent thymidylate synthase	K9MCR9	Sulfolobus_virus	1.5e-47	48.8
WP_012547885.1\|650650_651247_+	thymidine kinase	Q6GYZ9	Mycoplasma_phage	6.9e-31	39.6
WP_012547205.1\|651236_652121_+	DUF1385 domain-containing protein	A0A0K2CP67	Brevibacillus_phage	6.4e-09	32.7
WP_012548179.1\|652098_653202_+	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	3.4e-07	40.2
WP_041723194.1\|653185_654034_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_012548318.1\|654024_655038_+	threonylcarbamoyl-AMP synthase	S4VW33	Pandoravirus	2.3e-55	41.8
WP_012547509.1\|655039_655483_+	low molecular weight protein arginine phosphatase	A0A2H4PQT9	Staphylococcus_phage	4.6e-08	33.8
WP_012548727.1\|655479_655926_+	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_012548053.1\|655922_657167_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	1.5e-96	51.3

DBSCAN-SWA_2

1246554 : 1259225

Catovirus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012547863.1\|1246554_1247697_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	5.9e-31	28.2
WP_012547330.1\|1247693_1248587_-	agmatinase	NA	NA	NA	NA
WP_012547791.1\|1248573_1248975_-	adenosylmethionine decarboxylase	A0A127KMD2	Cyanophage	1.1e-13	34.8
WP_012547070.1\|1249067_1250309_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_012548286.1\|1250313_1250931_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	2.6e-33	47.7
WP_012547159.1\|1250903_1251989_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	4.1e-58	39.9
WP_012548168.1\|1251931_1253317_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	8.7e-53	31.9
WP_012547310.1\|1253322_1255461_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.2e-146	43.5
WP_012548456.1\|1255476_1256136_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_012548165.1\|1256135_1256387_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_012548700.1\|1256411_1257713_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	6.5e-26	33.0
WP_012547473.1\|1257950_1259225_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	2.0e-144	60.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011297

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection