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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_011958 Rhodobacter sphaeroides KD131 chromosome 2, complete sequence 2 crisprs DEDDh 0 0 3 0
NC_011960 Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence 2 crisprs NA 0 2 1 0
NC_011963 Rhodobacter sphaeroides KD131 chromosome 1, complete sequence 3 crisprs csa3,DEDDh,cas3,cas5,cas8c,cas7,cas4,cas1,cas2 0 18 5 0
NC_011962 Rhodobacter sphaeroides KD131 plasmid pRSKD131A, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NC_011958
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011958_1 191804-191907 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011958_2 1246234-1246445 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 714052 : 780660 59 Burkholderia_virus(20.0%) integrase,tRNA,transposase attL 719765:719816|attR 752512:752563
DBSCAN-SWA_2 935400 : 961550 26 Acidithiobacillus_phage(20.0%) head,transposase,portal,terminase,capsid NA
DBSCAN-SWA_3 974898 : 1029300 52 Acidithiobacillus_phage(23.33%) integrase,head,tail,transposase,portal,terminase,capsid attL 983728:983744|attR 1001259:1001275
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NC_011960
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011960_1 63076-63162 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011960_2 72575-72653 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_011960_1 1.1|63100|39|NC_011960|CRISPRCasFinder 63100-63138 39 NC_011960 Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence 63100-63138 0 1.0
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 NC_011960 Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence 72598-72630 0 1.0
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 CP036421 Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence 28105-28137 0 1.0
NC_011960_1 1.1|63100|39|NC_011960|CRISPRCasFinder 63100-63138 39 NZ_CP030273 Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence 75966-76004 1 0.974
NC_011960_1 1.1|63100|39|NC_011960|CRISPRCasFinder 63100-63138 39 CP047033 Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence 69648-69686 1 0.974
NC_011960_1 1.1|63100|39|NC_011960|CRISPRCasFinder 63100-63138 39 NC_009040 Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence 30261-30299 1 0.974
NC_011960_1 1.1|63100|39|NC_011960|CRISPRCasFinder 63100-63138 39 NZ_CP047039 Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence 69619-69657 1 0.974
NC_011960_1 1.1|63100|39|NC_011960|CRISPRCasFinder 63100-63138 39 NZ_CP015213 Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence 113436-113474 1 0.974
NC_011960_1 1.1|63100|39|NC_011960|CRISPRCasFinder 63100-63138 39 NZ_CP051470 Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence 10724-10762 1 0.974
NC_011960_1 1.1|63100|39|NC_011960|CRISPRCasFinder 63100-63138 39 NZ_CP015290 Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence 119408-119446 1 0.974
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 NZ_CP030273 Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence 67220-67252 2 0.939
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 CP047033 Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence 60898-60930 2 0.939
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 NC_009040 Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence 21550-21582 2 0.939
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 NZ_CP047039 Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence 60874-60906 2 0.939
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 NZ_CP015213 Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence 104690-104722 2 0.939
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 NZ_CP051470 Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence 19476-19508 2 0.939
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 NZ_CP015290 Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence 3847-3879 2 0.939
NC_011960_1 1.1|63100|39|NC_011960|CRISPRCasFinder 63100-63138 39 CP036421 Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence 18781-18819 4 0.897
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 NZ_CP045374 Sulfitobacter sp. THAF37 plasmid pTHAF37_b, complete sequence 70638-70670 7 0.788
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4332115-4332147 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MN284907 Gordonia phage Fireball, complete genome 8624-8656 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MK864264 Gordonia phage VanDeWege, complete genome 8812-8844 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MH479910 Gordonia phage Danyall, complete genome 8520-8552 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MT639651 Gordonia phage Portcullis, complete genome 8580-8612 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MH479917 Gordonia phage KimmyK, complete genome 8648-8680 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MH669015 Gordonia phage TillyBobJoe, complete genome 8335-8367 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MK814761 Gordonia phage SmokingBunny, complete genome 8499-8531 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 KX557286 Gordonia phage Twister6, complete genome 8431-8463 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MK864267 Gordonia phage Valary, complete genome 8884-8916 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MK967381 Gordonia phage RogerDodger, complete genome 8884-8916 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MT310872 Gordonia phage Evamon, complete genome 8501-8533 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MT521998 Gordonia phage Jambalaya, complete genome 8332-8364 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MK864265 Gordonia phage Barb, complete genome 8648-8680 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 NC_030913 Gordonia phage Wizard, complete genome 8624-8656 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MK305889 Gordonia phage Mutzi, complete genome 8520-8552 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MN010760 Gordonia phage Nubi, complete genome 8521-8553 9 0.727
NC_011960_2 2.1|72598|33|NC_011960|CRISPRCasFinder 72598-72630 33 MK864266 Gordonia phage Arri, complete genome 8692-8724 10 0.697

1. spacer 1.1|63100|39|NC_011960|CRISPRCasFinder matches to NC_011960 (Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence) position: , mismatch: 0, identity: 1.0

aagacgcagcacgcggccgaactggagcgccatgcggaa	CRISPR spacer
aagacgcagcacgcggccgaactggagcgccatgcggaa	Protospacer
***************************************

2. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to NC_011960 (Rhodobacter sphaeroides KD131 plasmid pRSKD131B, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
tttgcccccgccgtgccgccctgccggcccccg	Protospacer
*********************************

3. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to CP036421 (Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
tttgcccccgccgtgccgccctgccggcccccg	Protospacer
*********************************

4. spacer 1.1|63100|39|NC_011960|CRISPRCasFinder matches to NZ_CP030273 (Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence) position: , mismatch: 1, identity: 0.974

aagacgcagcacgcggccgaactggagcgccatgcggaa	CRISPR spacer
aagacgcagcacgcggccgaactcgagcgccatgcggaa	Protospacer
*********************** ***************

5. spacer 1.1|63100|39|NC_011960|CRISPRCasFinder matches to CP047033 (Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence) position: , mismatch: 1, identity: 0.974

aagacgcagcacgcggccgaactggagcgccatgcggaa	CRISPR spacer
aagacgcagcacgcggccgaactcgagcgccatgcggaa	Protospacer
*********************** ***************

6. spacer 1.1|63100|39|NC_011960|CRISPRCasFinder matches to NC_009040 (Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence) position: , mismatch: 1, identity: 0.974

aagacgcagcacgcggccgaactggagcgccatgcggaa	CRISPR spacer
aagacgcagcacgaggccgaactggagcgccatgcggaa	Protospacer
************* *************************

7. spacer 1.1|63100|39|NC_011960|CRISPRCasFinder matches to NZ_CP047039 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence) position: , mismatch: 1, identity: 0.974

aagacgcagcacgcggccgaactggagcgccatgcggaa	CRISPR spacer
aagacgcagcacgcggccgaactcgagcgccatgcggaa	Protospacer
*********************** ***************

8. spacer 1.1|63100|39|NC_011960|CRISPRCasFinder matches to NZ_CP015213 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence) position: , mismatch: 1, identity: 0.974

aagacgcagcacgcggccgaactggagcgccatgcggaa	CRISPR spacer
aagacgcagcacgcggccgaactcgagcgccatgcggaa	Protospacer
*********************** ***************

9. spacer 1.1|63100|39|NC_011960|CRISPRCasFinder matches to NZ_CP051470 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence) position: , mismatch: 1, identity: 0.974

aagacgcagcacgcggccgaactggagcgccatgcggaa	CRISPR spacer
aagacgcagcacgcggccgaactcgagcgccatgcggaa	Protospacer
*********************** ***************

10. spacer 1.1|63100|39|NC_011960|CRISPRCasFinder matches to NZ_CP015290 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence) position: , mismatch: 1, identity: 0.974

aagacgcagcacgcggccgaactggagcgccatgcggaa	CRISPR spacer
aagacgcagcacgcggccgaactcgagcgccatgcggaa	Protospacer
*********************** ***************

11. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to NZ_CP030273 (Rhodobacter sphaeroides 2.4.1 plasmid pA, complete sequence) position: , mismatch: 2, identity: 0.939

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
**************************.***** 

12. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to CP047033 (Rhodobacter sphaeroides strain DSM 158 plasmid pEA, complete sequence) position: , mismatch: 2, identity: 0.939

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
**************************.***** 

13. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to NC_009040 (Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, complete sequence) position: , mismatch: 2, identity: 0.939

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
**************************.***** 

14. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to NZ_CP047039 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pEA, complete sequence) position: , mismatch: 2, identity: 0.939

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
**************************.***** 

15. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to NZ_CP015213 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid b, complete sequence) position: , mismatch: 2, identity: 0.939

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
**************************.***** 

16. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to NZ_CP051470 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10A, complete sequence) position: , mismatch: 2, identity: 0.939

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
**************************.***** 

17. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to NZ_CP015290 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid b, complete sequence) position: , mismatch: 2, identity: 0.939

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
tttgcccccgccgtgccgccctgccgacccccc	Protospacer
**************************.***** 

18. spacer 1.1|63100|39|NC_011960|CRISPRCasFinder matches to CP036421 (Rhodobacter sphaeroides strain HJ plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.897

aagacgcagcacgcggccgaactggagcgccatgcggaa	CRISPR spacer
aagacgcagcaggcggccgaactcgagcgccatgccgga	Protospacer
*********** *********** *********** *.*

19. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to NZ_CP045374 (Sulfitobacter sp. THAF37 plasmid pTHAF37_b, complete sequence) position: , mismatch: 7, identity: 0.788

--tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
aggttg--cccgccgtgtcgccctgctggcccttg	Protospacer
   ***  *********.********.*****..*

20. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gacggcaccgccgggccgccctgctggccccgc	Protospacer
  .* * ****** **********.******  

21. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MN284907 (Gordonia phage Fireball, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

22. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MK864264 (Gordonia phage VanDeWege, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

23. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MH479910 (Gordonia phage Danyall, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

24. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MT639651 (Gordonia phage Portcullis, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

25. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MH479917 (Gordonia phage KimmyK, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

26. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MH669015 (Gordonia phage TillyBobJoe, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

27. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MK814761 (Gordonia phage SmokingBunny, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

28. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to KX557286 (Gordonia phage Twister6, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

29. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MK864267 (Gordonia phage Valary, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

30. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MK967381 (Gordonia phage RogerDodger, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

31. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MT310872 (Gordonia phage Evamon, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

32. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MT521998 (Gordonia phage Jambalaya, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

33. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MK864265 (Gordonia phage Barb, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

34. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to NC_030913 (Gordonia phage Wizard, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

35. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MK305889 (Gordonia phage Mutzi, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

36. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MN010760 (Gordonia phage Nubi, complete genome) position: , mismatch: 9, identity: 0.727

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaggagtct	Protospacer
 ************ .**********.*   .* 

37. spacer 2.1|72598|33|NC_011960|CRISPRCasFinder matches to MK864266 (Gordonia phage Arri, complete genome) position: , mismatch: 10, identity: 0.697

tttgcccccgccgtgccgccctgccggcccccg	CRISPR spacer
gttgcccccgccggaccgccctgccaaggatct	Protospacer
 ************ .**********..   .* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 72667 : 83034 10 Enterobacteria_phage(42.86%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NC_011963
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011963_1 314440-314553 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011963_2 1384998-1385140 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011963_3 1994975-1997002 TypeI I-C
30 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_011963_3 3.15|1995944|35|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995944-1995978 35 NZ_CP041355 Pseudomonas aeruginosa strain AZPAE15042 plasmid pIHMA87, complete sequence 91513-91547 6 0.829
NC_011963_3 3.30|1996939|32|NC_011963|CRT 1996939-1996970 32 NZ_CP041652 Streptomyces sp. RLB1-9 plasmid pRLB1-9.2, complete sequence 69412-69443 6 0.812
NC_011963_3 3.31|1996605|33|NC_011963|PILER-CR 1996605-1996637 33 NZ_CP017750 Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence 310972-311004 6 0.818
NC_011963_3 3.31|1996605|33|NC_011963|PILER-CR 1996605-1996637 33 NZ_CP026545 Cupriavidus metallidurans strain Ni-2 plasmid unnamed1 3162-3194 6 0.818
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 NZ_CP013635 Rhizobium sp. N324 plasmid pRspN324e, complete sequence 593047-593080 7 0.794
NC_011963_3 3.25|1996605|34|NC_011963|CRISPRCasFinder,CRT 1996605-1996638 34 NZ_CP017750 Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence 310972-311005 7 0.794
NC_011963_3 3.25|1996605|34|NC_011963|CRISPRCasFinder,CRT 1996605-1996638 34 NZ_CP026545 Cupriavidus metallidurans strain Ni-2 plasmid unnamed1 3162-3195 7 0.794
NC_011963_3 3.33|1996739|33|NC_011963|PILER-CR 1996739-1996771 33 NZ_CP015007 Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence 307877-307909 7 0.788
NC_011963_3 3.4|1995213|33|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995213-1995245 33 NZ_CP035001 Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence 114470-114502 8 0.758
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 NZ_CP021653 Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence 1057277-1057310 8 0.765
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 NZ_CP021767 Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence 1057265-1057298 8 0.765
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 NZ_CP012940 Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence 806494-806527 8 0.765
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 NZ_CP012944 Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence 1087939-1087972 8 0.765
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 NZ_CP012688 Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence 1057284-1057317 8 0.765
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 NC_017575 Ralstonia solanacearum Po82 megaplasmid, complete sequence 1309882-1309915 8 0.765
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 NZ_CP026308 Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence 1309826-1309859 8 0.765
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 CP047139 Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence 985873-985906 8 0.765
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 NZ_CP051295 Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence 798219-798252 8 0.765
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 CP047137 Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence 943634-943667 8 0.765
NC_011963_3 3.12|1995747|33|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995747-1995779 33 NZ_CP013539 Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence 325617-325649 8 0.758
NC_011963_3 3.12|1995747|33|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995747-1995779 33 NZ_AP014705 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence 180059-180091 8 0.758
NC_011963_3 3.20|1996276|32|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1996276-1996307 32 NZ_CP018299 Photobacterium damselae strain Phdp Wu-1 plasmid plas1, complete sequence 196698-196729 8 0.75
NC_011963_3 3.27|1996739|34|NC_011963|CRISPRCasFinder,CRT 1996739-1996772 34 NZ_CP015007 Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence 307877-307910 8 0.765
NC_011963_3 3.11|1995682|33|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995682-1995714 33 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 403478-403510 9 0.727
NC_011963_3 3.18|1996144|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1996144-1996177 34 NZ_CP022366 Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence 274713-274746 9 0.735
NC_011963_3 3.30|1996939|32|NC_011963|CRT 1996939-1996970 32 NZ_CP025016 Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence 26143-26174 9 0.719
NC_011963_3 3.30|1996939|32|NC_011963|CRT 1996939-1996970 32 NZ_CP010858 Marinovum algicola DG 898 plasmid pMaD3 14203-14234 9 0.719
NC_011963_3 3.3|1995145|36|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995145-1995180 36 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 822457-822492 10 0.722
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 NZ_AP022571 Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence 146612-146645 10 0.706
NC_011963_3 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995278-1995311 34 NZ_CP040820 Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence 14087-14120 10 0.706
NC_011963_3 3.15|1995944|35|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995944-1995978 35 NZ_LR594663 Variovorax sp. RA8 plasmid 2 403002-403036 10 0.714
NC_011963_3 3.15|1995944|35|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995944-1995978 35 NZ_CP034186 Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence 69919-69953 10 0.714
NC_011963_3 3.18|1996144|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1996144-1996177 34 NZ_AP022611 Mycolicibacterium madagascariense strain JCM 13574 plasmid pJCM13574 144216-144249 10 0.706
NC_011963_3 3.21|1996340|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1996340-1996373 34 NZ_CP020443 Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence 66035-66068 10 0.706
NC_011963_3 3.35|1996872|34|NC_011963|PILER-CR 1996872-1996905 34 NZ_CP040937 Hymenobacter sp. DG01 plasmid unnamed, complete sequence 239387-239420 10 0.706
NC_011963_3 3.35|1996872|34|NC_011963|PILER-CR 1996872-1996905 34 NZ_CP024314 Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence 1909624-1909657 10 0.706
NC_011963_3 3.6|1995344|36|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995344-1995379 36 NC_021347 Rhodococcus phage E3, complete genome 64522-64557 11 0.694
NC_011963_3 3.8|1995479|35|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1995479-1995513 35 MN908685 Microbacterium phage PauloDiaboli, complete genome 57937-57971 11 0.686
NC_011963_3 3.19|1996210|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1996210-1996243 34 NC_018696 Paraburkholderia phenoliruptrix BR3459a plasmid pSYMBR3459, complete sequence 569219-569252 11 0.676
NC_011963_3 3.21|1996340|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT 1996340-1996373 34 NZ_CP032695 Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence 1917635-1917668 11 0.676

1. spacer 3.15|1995944|35|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041355 (Pseudomonas aeruginosa strain AZPAE15042 plasmid pIHMA87, complete sequence) position: , mismatch: 6, identity: 0.829

ccaatcgtccacgcccagcgcccaggccagccacg	CRISPR spacer
ctcggcgcccacgcccagcgcgcaggccagccacg	Protospacer
*. . **.************* *************

2. spacer 3.30|1996939|32|NC_011963|CRT matches to NZ_CP041652 (Streptomyces sp. RLB1-9 plasmid pRLB1-9.2, complete sequence) position: , mismatch: 6, identity: 0.812

agtaggt-ctggtcggcctgctcaagcgtcatg	CRISPR spacer
-gtagctgctcgccggcctgctcaagcgtcagc	Protospacer
 **** * ** *.******************  

3. spacer 3.31|1996605|33|NC_011963|PILER-CR matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.818

aaccagg-tggcggtcggcaatgcgcgggtccgc	CRISPR spacer
-tcgaggctggtggtcggcaatgcgcggttcctc	Protospacer
  * *** ***.**************** *** *

4. spacer 3.31|1996605|33|NC_011963|PILER-CR matches to NZ_CP026545 (Cupriavidus metallidurans strain Ni-2 plasmid unnamed1) position: , mismatch: 6, identity: 0.818

aaccagg-tggcggtcggcaatgcgcgggtccgc	CRISPR spacer
-tcgaggctggtggtcggcaatgcgcggttcctc	Protospacer
  * *** ***.**************** *** *

5. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 7, identity: 0.794

--cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
atcgcctgat--cgttgttgagcgcggcgacgccgc	Protospacer
  ****.*..  ****** ******* *********

6. spacer 3.25|1996605|34|NC_011963|CRISPRCasFinder,CRT matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

aaccagg-tggcggtcggcaatgcgcgggtccgcc	CRISPR spacer
-tcgaggctggtggtcggcaatgcgcggttcctct	Protospacer
  * *** ***.**************** *** *.

7. spacer 3.25|1996605|34|NC_011963|CRISPRCasFinder,CRT matches to NZ_CP026545 (Cupriavidus metallidurans strain Ni-2 plasmid unnamed1) position: , mismatch: 7, identity: 0.794

aaccagg-tggcggtcggcaatgcgcgggtccgcc	CRISPR spacer
-tcgaggctggtggtcggcaatgcgcggttcctct	Protospacer
  * *** ***.**************** *** *.

8. spacer 3.33|1996739|33|NC_011963|PILER-CR matches to NZ_CP015007 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence) position: , mismatch: 7, identity: 0.788

gtcgcgggccagaaacacaactgcgccctcgtg	CRISPR spacer
atcgccggccagaaaaacaactgcgcccatgat	Protospacer
.**** ********* ************ .*  

9. spacer 3.4|1995213|33|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 8, identity: 0.758

catgtgcagggcgaacgcggtgacgccccacgc	CRISPR spacer
catgtacagggcgaccgcggtgacgtcggcgac	Protospacer
*****.******** **********.*    .*

10. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
ggcccggtcgcgttgtagagcgcgccggcatgcc	Protospacer
 ******. ******************.*..  *

11. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
ggcccggtcgcgttgtagagcgcgccggcatgcc	Protospacer
 ******. ******************.*..  *

12. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
ggcccggtcgcgttgtagagcgcgccggcatgcc	Protospacer
 ******. ******************.*..  *

13. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
ggcccggtcgcgttgtagagcgcgccggcatgcc	Protospacer
 ******. ******************.*..  *

14. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
ggcccggtcgcgttgtagagcgcgccggcatgcc	Protospacer
 ******. ******************.*..  *

15. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.765

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
ggcccggtcgcgttgtagagcgcgccggcatgcc	Protospacer
 ******. ******************.*..  *

16. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
ggcccggtcgcgttgtagagcgcgccggcatgcc	Protospacer
 ******. ******************.*..  *

17. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
ggcccggtcgcgttgtagagcgcgccggcatgcc	Protospacer
 ******. ******************.*..  *

18. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.765

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
ggcccggtcgcgttgtagagcgcgccggcatgcc	Protospacer
 ******. ******************.*..  *

19. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
ggcccggtcgcgttgtagagcgcgccggcatgcc	Protospacer
 ******. ******************.*..  *

20. spacer 3.12|1995747|33|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013539 (Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence) position: , mismatch: 8, identity: 0.758

cgtggtctacgaggcgcccctcgatccgcgctg	CRISPR spacer
ccgggcgatcgaggcacccctcgatcctcgctg	Protospacer
*  **.   ******.*********** *****

21. spacer 3.12|1995747|33|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.758

cgtggtctacgaggcgcccctcgatccgcgctg	CRISPR spacer
ggcgctgctcgacgcgcccctcgatgcgcgctg	Protospacer
 *.* * . *** ************ *******

22. spacer 3.20|1996276|32|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018299 (Photobacterium damselae strain Phdp Wu-1 plasmid plas1, complete sequence) position: , mismatch: 8, identity: 0.75

-acacaaaaaacaaaagccgtcatgccgatagg	CRISPR spacer
aatac-taaaacaaaagcggtcatgccaatgtc	Protospacer
 *.**  *********** ********.**.  

23. spacer 3.27|1996739|34|NC_011963|CRISPRCasFinder,CRT matches to NZ_CP015007 (Aminobacter aminovorans strain KCTC 2477 plasmid pAA02, complete sequence) position: , mismatch: 8, identity: 0.765

gtcgcgggccagaaacacaactgcgccctcgtgc	CRISPR spacer
atcgccggccagaaaaacaactgcgcccatgatg	Protospacer
.**** ********* ************ .*   

24. spacer 3.11|1995682|33|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.727

gtcaccgatggccccatgggccgtgtcgcccgg	CRISPR spacer
tcgcccgatggccccacgggccgtctcggtctg	Protospacer
 .  ************.******* *** .* *

25. spacer 3.18|1996144|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 9, identity: 0.735

acgctgggcccggcgtccgagccgctgcagggac	CRISPR spacer
tcgctgtgcccggcgtcggagccgcggaaatcgc	Protospacer
 ***** ********** ******* * *.  .*

26. spacer 3.30|1996939|32|NC_011963|CRT matches to NZ_CP025016 (Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence) position: , mismatch: 9, identity: 0.719

agtaggtctggtcggcctgctcaagcgtcatg	CRISPR spacer
catcgccacggtcggactgctcaagcgtaatg	Protospacer
 .* * . .****** ************ ***

27. spacer 3.30|1996939|32|NC_011963|CRT matches to NZ_CP010858 (Marinovum algicola DG 898 plasmid pMaD3) position: , mismatch: 9, identity: 0.719

agtaggtctggtcggcctgctcaagcgtcatg	CRISPR spacer
gcgcggtctggccggcctgctccagcgcctcg	Protospacer
.   *******.********** ****.* .*

28. spacer 3.3|1995145|36|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 10, identity: 0.722

gggctgatctcgaccccgggcgggatcaccggaacg	CRISPR spacer
ctcatgacctcgaccgcgggcgggatcaccttctcg	Protospacer
    ***.******* **************    **

29. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.706

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
gggccggcggcgttgcacagcgcgccgcgacgat	Protospacer
 * ************.* *********  .* ..

30. spacer 3.5|1995278|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040820 (Paraoceanicella profunda strain D4M1 plasmid pD4M1B, complete sequence) position: , mismatch: 10, identity: 0.706

cgcccggcggcgttgtagagcgcgccgacgccgc	CRISPR spacer
tccacggcggccttgtagagcgcgcggatctgcc	Protospacer
. * ******* ************* **. .  *

31. spacer 3.15|1995944|35|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 10, identity: 0.714

ccaatcgtccacgcccagcgcccaggccagccacg	CRISPR spacer
tgcagtgtccacgcacagcgccctggccagcctat	Protospacer
.  * .******** ******** ********   

32. spacer 3.15|1995944|35|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034186 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

ccaatcgtccacgcccagcgcccaggccagccacg	CRISPR spacer
gatgctgtagacgcccagcacccaggccagccccg	Protospacer
   ...**  *********.************ **

33. spacer 3.18|1996144|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022611 (Mycolicibacterium madagascariense strain JCM 13574 plasmid pJCM13574) position: , mismatch: 10, identity: 0.706

acgctgggcccggcgtccgagccgctgcagggac	CRISPR spacer
gtccttggcgcggcgtccgagccgctggccagcc	Protospacer
.. ** *** *****************   .* *

34. spacer 3.21|1996340|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020443 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

ttacacctgctcgactggcagcaccggtaagatt	CRISPR spacer
ggccacctgatcgactggctgcaccggggcgagg	Protospacer
   ****** ********* ******* . **  

35. spacer 3.35|1996872|34|NC_011963|PILER-CR matches to NZ_CP040937 (Hymenobacter sp. DG01 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

tcgctcggcacgtagcggccggcgtaggccgccg	CRISPR spacer
aaggctggcacgtagcggccagcgtgggccacat	Protospacer
  * ..**************.****.****.*  

36. spacer 3.35|1996872|34|NC_011963|PILER-CR matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 10, identity: 0.706

tcgctcggcacgtagcggccggcgtaggccgccg	CRISPR spacer
gtccgtggcacgtagcggccggcgtcgccctggg	Protospacer
 . * .******************* * **   *

37. spacer 3.6|1995344|36|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NC_021347 (Rhodococcus phage E3, complete genome) position: , mismatch: 11, identity: 0.694

cccctcgtcgcccgccgggtggacgtcgacaagatg	CRISPR spacer
gccctcgacgcccgccgcgtggacgtcgttggctga	Protospacer
 ****** ********* ********** ...   .

38. spacer 3.8|1995479|35|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to MN908685 (Microbacterium phage PauloDiaboli, complete genome) position: , mismatch: 11, identity: 0.686

atcaggcggatgttggtcagcatgtcctcgatggc	CRISPR spacer
gcagttccgatgttggtcagaatgtcctcggtgta	Protospacer
.. .  * ************ *********.**  

39. spacer 3.19|1996210|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NC_018696 (Paraburkholderia phenoliruptrix BR3459a plasmid pSYMBR3459, complete sequence) position: , mismatch: 11, identity: 0.676

ggaaacatgcccgatcatgtcggacgtgatgaaa	CRISPR spacer
catgccgggctcgatcatgtcggccgtgatgatc	Protospacer
 . . *. **.************ ********  

40. spacer 3.21|1996340|34|NC_011963|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 11, identity: 0.676

ttacacctgctcgactggcagcaccggtaagatt	CRISPR spacer
cttgacctgctcgacatgcagcaccggtttcgcc	Protospacer
.*  ***********  ***********   ...

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 87161 : 96208 8 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_2 337842 : 345763 10 Gordonia_phage(16.67%) NA NA
DBSCAN-SWA_3 352380 : 372207 30 Paracoccus_phage(23.08%) head,integrase,terminase,capsid,portal attL 364134:364151|attR 375800:375817
DBSCAN-SWA_4 731042 : 801675 63 Paracoccus_phage(22.22%) head,protease,tail,capsid,portal NA
DBSCAN-SWA_5 3080811 : 3108004 25 Paracoccus_phage(25.0%) head,terminase,transposase,tail,capsid,portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage