CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_012559	Laribacter hongkongensis HLHK9, complete sequence	0 crisprs	DEDDh,cas8f,cas5f,DinG,csa3	0	0	11	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

343498 : 422504

Burkholderia_phage(27.03%)

integrase,plate,tail,terminase,capsid,protease,head,portal,tRNA,holin

attL 346367:346387|attR 402255:402275

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012695851.1\|343498_344272_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_012695852.1\|344268_344640_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_143714524.1\|344750_345215_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	NA	NA	NA
WP_012695854.1\|345274_347605_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.2e-167	41.9
346367:346387	attL	NA	NA	NA	NA
WP_012695855.1\|347601_347913_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.0e-09	35.8
WP_012695856.1\|348151_348358_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.6e-22	80.0
WP_143714417.1\|349775_350072_-	hypothetical protein	NA	NA	NA	NA
WP_051189976.1\|350169_351954_+	bifunctional isocitrate dehydrogenase kinase/phosphatase	NA	NA	NA	NA
WP_012695860.1\|352020_352695_+	pseudouridine synthase	NA	NA	NA	NA
WP_012695861.1\|352679_353108_-	hypothetical protein	NA	NA	NA	NA
WP_041825434.1\|353312_355838_-	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.6e-20	20.7
WP_041825804.1\|356063_357359_+\|integrase	integrase family protein	C7BGE7	Burkholderia_phage	7.0e-129	53.3
WP_081433543.1\|357331_357598_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_041825436.1\|357590_358097_-	hypothetical protein	NA	NA	NA	NA
WP_012695864.1\|358130_359879_-	replication endonuclease	F1BUM9	Cronobacter_phage	2.8e-64	37.3
WP_012695865.1\|359875_360304_-	hypothetical protein	NA	NA	NA	NA
WP_012695866.1\|360315_360648_-	transcriptional regulator	NA	NA	NA	NA
WP_012695867.1\|360658_360865_-	hypothetical protein	NA	NA	NA	NA
WP_012695868.1\|360861_361053_-	hypothetical protein	NA	NA	NA	NA
WP_012695869.1\|361049_361235_-	hypothetical protein	NA	NA	NA	NA
WP_012695870.1\|361328_361613_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_012695871.1\|361612_362065_-	hypothetical protein	A0A291AWW8	Escherichia_phage	1.1e-15	34.0
WP_012695872.1\|362087_362408_-	hypothetical protein	NA	NA	NA	NA
WP_143714418.1\|362406_362991_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_143714419.1\|363515_364004_-	hypothetical protein	NA	NA	NA	NA
WP_143714525.1\|364092_364803_-	nucleotide-binding protein	NA	NA	NA	NA
WP_041825439.1\|364973_365240_-	hypothetical protein	NA	NA	NA	NA
WP_012695876.1\|365239_365431_-	YodC family protein	NA	NA	NA	NA
WP_012695877.1\|365840_367034_-	phage late control D family protein	R9QBT3	Mannheimia_phage	5.5e-96	52.6
WP_012695878.1\|367015_367483_-\|tail	phage tail protein	E5E3P8	Burkholderia_phage	4.0e-42	65.1
WP_012695879.1\|367487_370100_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	4.0e-107	41.2
WP_012695880.1\|370100_370214_-\|tail	GpE family phage tail protein	E5FFG6	Burkholderia_phage	1.7e-07	70.6
WP_012695881.1\|370222_370516_-\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	1.6e-20	60.5
WP_012695882.1\|370530_371040_-\|tail	phage major tail tube protein	E5E3Q2	Burkholderia_phage	7.9e-52	60.7
WP_012695883.1\|371049_372225_-\|tail	phage tail sheath protein	A4PE49	Ralstonia_virus	4.2e-157	71.8
WP_143714420.1\|372279_372588_-	hypothetical protein	NA	NA	NA	NA
WP_012695885.1\|372719_373487_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	4.8e-101	66.9
WP_143714421.1\|373488_373647_-	Com family DNA-binding transcriptional regulator	A0A1S5NPS9	Burkholderia_phage	6.2e-08	60.0
WP_012695887.1\|373821_374382_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_012695888.1\|374395_375451_-\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	6.0e-54	60.8
WP_012695889.1\|375450_376077_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	3.1e-58	54.6
WP_041825811.1\|376069_376957_-\|plate	baseplate J/gp47 family protein	A0A0F7LCQ9	Escherichia_phage	3.0e-83	57.3
WP_041825442.1\|376980_377331_-	GPW/gp25 family protein	A0A1S5NNH3	Burkholderia_phage	4.9e-21	48.6
WP_012695895.1\|378500_378944_-\|tail	phage tail protein	E5E3R4	Burkholderia_phage	5.3e-28	50.0
WP_012695896.1\|378936_379167_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_012695897.1\|379248_379680_-	hypothetical protein	NA	NA	NA	NA
WP_012695898.1\|379676_380480_-	N-acetylmuramidase family protein	E5E3R7	Burkholderia_phage	8.0e-75	58.5
WP_012695899.1\|380467_380752_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_012695901.1\|381122_381329_-\|tail	tail protein X	Q9ZXL9	Pseudomonas_virus	1.4e-15	59.1
WP_012695902.1\|381328_381796_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	6.2e-27	45.5
WP_012695903.1\|381888_382581_-\|terminase	terminase	K4NX86	Burkholderia_phage	1.9e-48	50.7
WP_012695904.1\|382577_383606_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	5.8e-110	59.4
WP_012695905.1\|383618_384440_-\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	2.1e-62	60.6
WP_190273287.1\|384568_386314_+\|terminase	terminase	E5E3S6	Burkholderia_phage	4.0e-196	58.1
WP_012695907.1\|386310_387345_+\|portal	phage portal protein	A4PE27	Ralstonia_virus	2.7e-131	64.3
WP_143714423.1\|387627_387972_-	hypothetical protein	NA	NA	NA	NA
WP_143714424.1\|388139_388595_-	hypothetical protein	NA	NA	NA	NA
WP_081433544.1\|388596_388932_-	STAS-like domain-containing protein	A0A2H4J4X6	uncultured_Caudovirales_phage	2.1e-16	44.7
WP_012695908.1\|388909_390016_-	hypothetical protein	NA	NA	NA	NA
WP_012695910.1\|390626_391097_-	DUF1841 family protein	NA	NA	NA	NA
WP_012695911.1\|391171_391666_+	glutathione peroxidase	Q70H87	Fowlpox_virus	2.2e-22	37.9
WP_012695912.1\|391867_392548_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_052292528.1\|392586_393456_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_012695914.1\|393598_394624_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_012695916.1\|396153_397293_-	porin	NA	NA	NA	NA
WP_012695917.1\|397437_398370_-	amidinotransferase	NA	NA	NA	NA
WP_012695918.1\|398528_400013_-	amino acid permease	NA	NA	NA	NA
WP_012695919.1\|400128_400689_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.2e-29	42.9
WP_012695920.1\|400856_403430_-	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	2.5e-122	35.7
402255:402275	attR	NA	NA	NA	NA
WP_012695922.1\|403716_404571_+	DMT family transporter	NA	NA	NA	NA
WP_012695923.1\|404619_405555_-	flagellar hook-associated protein FlgL	NA	NA	NA	NA
WP_012695924.1\|405564_407397_-	flagellar hook-associated protein FlgK	NA	NA	NA	NA
WP_012695925.1\|407464_408412_-	flagellar assembly peptidoglycan hydrolase FlgJ	C0KIU7	Pseudomonas_phage	2.8e-10	32.8
WP_012695927.1\|409521_410223_-	flagellar basal body L-ring protein FlgH	NA	NA	NA	NA
WP_012695928.1\|410290_411073_-	flagellar basal-body rod protein FlgG	NA	NA	NA	NA
WP_012695929.1\|411116_411860_-	flagellar basal-body rod protein FlgF	NA	NA	NA	NA
WP_012695930.1\|411873_413454_-	flagellar hook protein FlgE	NA	NA	NA	NA
WP_012695931.1\|413493_414213_-	flagellar hook assembly protein FlgD	NA	NA	NA	NA
WP_012695932.1\|414229_414643_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA
WP_027823798.1\|414645_415059_-	flagellar basal body rod protein FlgB	NA	NA	NA	NA
WP_143714526.1\|415267_416578_-	AAA-associated domain-containing protein	G3M9Y6	Bacillus_virus	1.4e-31	34.6
WP_012695935.1\|416585_418316_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_012695936.1\|418429_420628_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.0e-124	42.8
WP_012695937.1\|420701_421151_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_012695938.1\|421151_422504_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	3.3e-113	58.3

DBSCAN-SWA_2

1054608 : 1131354

uncultured_Caudovirales_phage(17.24%)

integrase,plate,tail,tRNA,transposase

attL 1045598:1045614|attR 1061838:1061854

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1045598:1045614	attL	NA	NA	NA	NA
WP_012696571.1\|1054608_1055064_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012696573.1\|1055434_1056715_+	hypothetical protein	NA	NA	NA	NA
WP_190273276.1\|1056857_1057028_-	hypothetical protein	NA	NA	NA	NA
WP_027823716.1\|1057134_1058175_-	selenide, water dikinase SelD	NA	NA	NA	NA
WP_012696576.1\|1058189_1059227_+\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_041825489.1\|1059665_1060964_-	amino acid permease	NA	NA	NA	NA
WP_012696578.1\|1060984_1062481_-	amino acid permease	NA	NA	NA	NA
1061838:1061854	attR	NA	NA	NA	NA
WP_012696579.1\|1062703_1063762_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_012696580.1\|1063771_1064824_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.4e-18	37.2
WP_012696581.1\|1064820_1065864_+	ABC transporter permease	NA	NA	NA	NA
WP_012696582.1\|1065860_1067486_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.3e-17	31.3
WP_041825491.1\|1067607_1068951_-	exodeoxyribonuclease VII large subunit	A0A1B3AYB4	Gordonia_phage	9.7e-33	32.2
WP_012696584.1\|1069372_1070398_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_012696585.1\|1070378_1070558_+	Trm112 family protein	NA	NA	NA	NA
WP_012696586.1\|1070557_1071322_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_012696587.1\|1071362_1072019_+	adenylate kinase	NA	NA	NA	NA
WP_190273277.1\|1072374_1073475_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_012696589.1\|1073670_1075599_+	PrkA family serine protein kinase	NA	NA	NA	NA
WP_012696590.1\|1075651_1076929_+	YeaH/YhbH family protein	A0A219UQP6	Bacillus_phage	1.1e-06	27.6
WP_012696591.1\|1076947_1078441_+	SpoVR family protein	NA	NA	NA	NA
WP_012696594.1\|1081483_1082668_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_012696595.1\|1082885_1085699_+\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	2.3e-140	36.9
WP_012696597.1\|1085754_1087512_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	3.6e-19	34.3
WP_012696598.1\|1088020_1089415_-	Methyl-accepting chemotaxis sensory transducer precursor	NA	NA	NA	NA
WP_012696602.1\|1090194_1090821_+	membrane protein	NA	NA	NA	NA
WP_012696604.1\|1090899_1091331_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A1V0DYD3	Dinoroseobacter_phage	3.0e-36	55.6
WP_012696605.1\|1091352_1091982_-	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA
WP_012696606.1\|1091987_1092983_-	6-carboxytetrahydropterin synthase	NA	NA	NA	NA
WP_012696607.1\|1092984_1093674_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.9e-41	45.0
WP_081433581.1\|1093834_1094470_-	EAL domain-containing protein	NA	NA	NA	NA
WP_012696609.1\|1094491_1094713_-	hypothetical protein	NA	NA	NA	NA
WP_052292545.1\|1094718_1096059_-	diguanylate cyclase	NA	NA	NA	NA
WP_034985191.1\|1097507_1098173_+	response regulator transcription factor	NA	NA	NA	NA
WP_012696618.1\|1098139_1100149_-	sensor histidine kinase	NA	NA	NA	NA
WP_143714443.1\|1100380_1100596_-	hypothetical protein	NA	NA	NA	NA
WP_190273278.1\|1100654_1108130_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA
WP_012696622.1\|1108695_1109658_+	agmatinase	NA	NA	NA	NA
WP_081433684.1\|1109927_1110320_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_143714534.1\|1110775_1111363_-\|tail	tail fiber protein	A0A0R8UEH9	Sinorhizobium_phage	1.7e-10	37.5
WP_012696625.1\|1111549_1112119_-	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	1.1e-33	40.4
WP_012696627.1\|1112115_1113180_-\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	3.3e-76	45.6
WP_012696626.1\|1113179_1113530_-	phage GP46 family protein	A0A2H4JDR8	uncultured_Caudovirales_phage	1.7e-29	61.7
WP_012696629.1\|1114296_1114923_-\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	1.5e-49	53.5
WP_012696630.1\|1114912_1115998_-\|tail	tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	1.2e-78	43.6
WP_012696631.1\|1115937_1117218_-	DNA circularization N-terminal domain-containing protein	A0A0M3LQ21	Mannheimia_phage	3.6e-29	27.8
WP_012696632.1\|1117219_1118767_-	glycoside hydrolase family 19 protein	A0A191ZC60	Erwinia_phage	5.9e-34	43.8
WP_012696633.1\|1118925_1119300_-	hypothetical protein	F6MIK8	Haemophilus_phage	1.2e-28	53.3
WP_012696634.1\|1119381_1120803_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B7SDP8	Haemophilus_phage	7.7e-105	49.5
WP_012696635.1\|1120895_1121549_-	DUF1834 family protein	B7SDP5	Haemophilus_phage	9.9e-07	29.3
WP_012696636.1\|1121795_1122038_-	hypothetical protein	NA	NA	NA	NA
WP_012696637.1\|1122238_1122868_-	hypothetical protein	A4JWP5	Burkholderia_virus	5.6e-23	38.5
WP_012696638.1\|1122860_1123088_-	hypothetical protein	A0A0M4UKB4	Ralstonia_phage	2.1e-09	42.5
WP_012696639.1\|1123091_1123610_-	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	2.3e-43	51.5
WP_012696640.1\|1123888_1124317_-\|transposase	transposase	A0A0U5KMW8	unidentified_phage	7.9e-21	39.2
WP_012696641.1\|1124367_1124979_-	DUF3164 family protein	A0A2H4IYN0	uncultured_Caudovirales_phage	6.5e-61	57.7
WP_012696642.1\|1125152_1125524_-	hypothetical protein	NA	NA	NA	NA
WP_012696643.1\|1125948_1126701_-	ATP-binding protein	A0A0U5DWK7	unidentified_phage	4.7e-53	49.2
WP_012696644.1\|1126726_1128766_-\|transposase	Mu transposase C-terminal domain-containing protein	Q38013	Pseudomonas_phage	1.5e-189	53.1
WP_012696645.1\|1128893_1129169_-	helix-turn-helix domain-containing protein	A0A2P9JZG5	Alteromonadaceae_phage	1.0e-21	57.8
WP_012696646.1\|1129333_1130062_+	helix-turn-helix transcriptional regulator	A0A2H4J7C3	uncultured_Caudovirales_phage	1.1e-30	35.8
WP_012696648.1\|1130886_1131354_+\|tail	phage tail protein	E5E3P8	Burkholderia_phage	1.7e-40	64.8

DBSCAN-SWA_3

1452637 : 1468093

Acinetobacter_phage(15.38%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012696969.1\|1452637_1453666_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	8.4e-85	49.4
WP_012696970.1\|1453674_1454244_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	5.1e-76	66.5
WP_081433687.1\|1454308_1454551_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_012696971.1\|1454672_1455161_-	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	1.5e-39	50.7
WP_012696972.1\|1455160_1455772_-	YqaJ viral recombinase family protein	A0A0S2SY31	Pseudomonas_phage	1.2e-62	59.4
WP_012696973.1\|1455774_1456563_-	phage recombination protein Bet	A0A0P0ZDB4	Stx2-converting_phage	5.3e-71	65.4
WP_012696974.1\|1456603_1456789_-	hypothetical protein	NA	NA	NA	NA
WP_012696975.1\|1456785_1457100_-	hypothetical protein	NA	NA	NA	NA
WP_012696976.1\|1457096_1457348_-	hypothetical protein	NA	NA	NA	NA
WP_012696977.1\|1457344_1457503_-	hypothetical protein	NA	NA	NA	NA
WP_012696978.1\|1458325_1459027_-	LexA family transcriptional regulator	A0A2H4J8I0	uncultured_Caudovirales_phage	7.8e-26	40.1
WP_081433600.1\|1459025_1459328_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012696979.1\|1459324_1459630_+	phage-related transcriptional regulator	NA	NA	NA	NA
WP_143714451.1\|1459633_1459849_+	hypothetical protein	NA	NA	NA	NA
WP_143714452.1\|1459878_1460739_+	helix-turn-helix domain-containing protein	A0A139ZPL0	Marinitoga_camini_virus	3.8e-14	38.2
WP_012696981.1\|1460735_1462112_+	replicative DNA helicase	O80281	Escherichia_phage	6.2e-67	37.1
WP_012696982.1\|1462108_1462537_+	recombination protein NinB	A0A1I9KFA6	Aeromonas_phage	1.2e-21	45.4
WP_012696983.1\|1462533_1462806_+	hypothetical protein	A0A0M3ULJ7	Salmonella_phage	3.6e-27	62.5
WP_012696984.1\|1462993_1463341_+	hypothetical protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	1.1e-44	77.2
WP_012696986.1\|1463821_1464499_+\|terminase	terminase small subunit	I6X6R5	Burkholderia_virus	1.2e-52	53.8
WP_012696989.1\|1465613_1465841_-	hypothetical protein	NA	NA	NA	NA
WP_012696990.1\|1465969_1466128_+	hypothetical protein	NA	NA	NA	NA
WP_012696991.1\|1466251_1468093_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	4.9e-35	28.3

DBSCAN-SWA_4

1475191 : 1490011

Pseudomonas_phage(28.57%)

integrase

attL 1481530:1481545|attR 1486586:1486601

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012696998.1\|1475191_1476961_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	6.5e-93	37.2
WP_012696999.1\|1476947_1477286_-	hypothetical protein	NA	NA	NA	NA
WP_012697000.1\|1477288_1477507_-	transcriptional coactivator p15/PC4 family protein	NA	NA	NA	NA
WP_012697001.1\|1477588_1478575_-	toprim domain-containing protein	A0A0H5AWB1	Pseudomonas_phage	1.0e-31	36.5
WP_012697002.1\|1478587_1478890_-	hypothetical protein	NA	NA	NA	NA
WP_012697003.1\|1478886_1479075_-	hypothetical protein	NA	NA	NA	NA
WP_143714453.1\|1479067_1479790_-	hypothetical protein	NA	NA	NA	NA
WP_012697005.1\|1479786_1480497_-	phage antirepressor N-terminal domain-containing protein	Q0H8C7	Salmonella_phage	2.4e-22	36.5
WP_012697006.1\|1480493_1480904_-	Rha family transcriptional regulator	A0A0S2SYC0	Pseudomonas_phage	3.6e-07	33.3
WP_012697007.1\|1480900_1481242_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012697008.1\|1481238_1481472_-	AlpA family phage regulatory protein	NA	NA	NA	NA
1481530:1481545	attL	NA	NA	NA	NA
WP_012697009.1\|1481848_1483099_-\|integrase	tyrosine-type recombinase/integrase	A0A077KET4	Ralstonia_phage	1.3e-55	35.3
WP_012697010.1\|1483273_1484092_+	hypothetical protein	W6MW26	Pseudomonas_phage	4.5e-73	51.7
WP_012697011.1\|1484156_1484603_+	GNAT family N-acetyltransferase	A0A2I7RY08	Vibrio_phage	5.0e-10	30.3
WP_012697012.1\|1484605_1484917_+	hypothetical protein	Q775C2	Bordetella_phage	1.8e-06	73.7
WP_012697013.1\|1484918_1486586_+	hypothetical protein	T1S9Z7	Salmonella_phage	1.6e-130	44.4
WP_012697014.1\|1486627_1486951_+	hypothetical protein	Q775C5	Bordetella_phage	1.2e-26	56.9
1486586:1486601	attR	NA	NA	NA	NA
WP_027824360.1\|1486943_1487579_+	hypothetical protein	Q775C6	Bordetella_phage	1.1e-34	53.3
WP_012697016.1\|1487597_1488608_+	hypothetical protein	Q6J1R9	Burkholderia_virus	2.2e-138	71.0
WP_012697017.1\|1488622_1489084_+	hypothetical protein	K4NYY6	Pseudomonas_phage	2.9e-13	37.5
WP_012697018.1\|1489096_1489339_+	hypothetical protein	NA	NA	NA	NA
WP_012697019.1\|1489405_1490011_+	hypothetical protein	Q775D0	Bordetella_phage	8.5e-53	53.2

DBSCAN-SWA_5

1513606 : 1613925

104

Burkholderia_phage(14.29%)

integrase,plate,tail,capsid,lysis,terminase,head,portal,tRNA

attL 1543436:1543452|attR 1618687:1618703

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012697040.1\|1513606_1514782_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	4.6e-87	42.7
WP_155826641.1\|1515563_1515761_-	hypothetical protein	NA	NA	NA	NA
WP_012697042.1\|1516287_1516887_+	hypothetical protein	NA	NA	NA	NA
WP_143714459.1\|1517374_1517623_-	hypothetical protein	NA	NA	NA	NA
WP_027823985.1\|1517863_1517968_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_012697046.1\|1517964_1519668_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_012697047.1\|1519683_1521744_+	potassium-transporting ATPase subunit KdpB	M1HBF8	Paramecium_bursaria_Chlorella_virus	3.6e-26	25.3
WP_012697048.1\|1521756_1522413_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_012697049.1\|1522442_1525076_+	sensor histidine kinase KdpD	A0A1V0SGX0	Hokovirus	2.7e-10	26.0
WP_012697050.1\|1525072_1525774_+	two-component system response regulator KdpE	NA	NA	NA	NA
WP_143714460.1\|1526869_1527268_-	hypothetical protein	NA	NA	NA	NA
WP_012697052.1\|1527885_1528506_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A218MND2	uncultured_virus	3.7e-19	43.1
WP_012697053.1\|1528603_1529746_-	alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase	NA	NA	NA	NA
WP_012697054.1\|1529742_1530450_-	phosphonate C-P lyase system protein PhnL	F2Y1V6	Organic_Lake_phycodnavirus	4.8e-07	24.5
WP_012697055.1\|1530454_1531225_-	phosphonate C-P lyase system protein PhnK	G3M9Y6	Bacillus_virus	4.9e-13	26.6
WP_012697056.1\|1531221_1532082_-	alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ	NA	NA	NA	NA
WP_012697057.1\|1532078_1533167_-	carbon-phosphorus lyase complex subunit PhnI	NA	NA	NA	NA
WP_051189999.1\|1533170_1533752_-	phosphonate C-P lyase system protein PhnH	NA	NA	NA	NA
WP_012697059.1\|1533748_1534195_-	phosphonate C-P lyase system protein PhnG	NA	NA	NA	NA
WP_012697060.1\|1534335_1535064_+	phosphonate metabolism transcriptional regulator PhnF	NA	NA	NA	NA
WP_012697061.1\|1535063_1536296_+	phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN	NA	NA	NA	NA
WP_012697062.1\|1536386_1537400_+	putative 2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_169447568.1\|1537357_1538560_+	putative 2-aminoethylphosphonate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.8e-31	38.7
WP_143714541.1\|1538574_1540245_+	putative 2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA
WP_034985483.1\|1540934_1543775_+	adenosylcobalamin-dependent ribonucleoside-diphosphate reductase	M4QT32	Loktanella_phage	1.6e-146	43.1
1543436:1543452	attL	NA	NA	NA	NA
WP_012697071.1\|1544175_1545483_-	purine permease	Q9KX94	Enterobacteria_phage	4.4e-22	30.4
WP_012697072.1\|1545706_1546018_+	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA
WP_027823975.1\|1546354_1546711_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_012697074.1\|1546865_1548692_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_012697075.1\|1548748_1549480_+	DsbC family protein	NA	NA	NA	NA
WP_012697076.1\|1550111_1551470_-	MFS transporter	NA	NA	NA	NA
WP_012697077.1\|1551624_1554450_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.7e-303	54.8
WP_012697078.1\|1554455_1554884_+	VOC family protein	NA	NA	NA	NA
WP_034985533.1\|1555070_1555721_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_012697080.1\|1555935_1557372_+	transporter	NA	NA	NA	NA
WP_012697081.1\|1557504_1559880_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_012697082.1\|1559957_1561160_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
WP_012697084.1\|1561440_1561890_-	OsmC family protein	NA	NA	NA	NA
WP_012697085.1\|1561897_1562917_-	3-deoxy-7-phosphoheptulonate synthase	NA	NA	NA	NA
WP_012697086.1\|1563110_1564349_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_012697087.1\|1564623_1565283_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_012697088.1\|1565364_1566153_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012697090.1\|1566441_1568034_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_190273285.1\|1568006_1568366_+	hypothetical protein	NA	NA	NA	NA
WP_012697094.1\|1569792_1570215_-	hypothetical protein	S5MDN5	Escherichia_phage	1.2e-13	37.0
WP_041825563.1\|1570969_1571566_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_012697096.1\|1571576_1572365_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_012697097.1\|1572427_1572604_+	pentapeptide MXKDX repeat protein	NA	NA	NA	NA
WP_012697098.1\|1572760_1573243_-\|lysis	lysis protein	NA	NA	NA	NA
WP_012697099.1\|1573239_1573704_-	lysozyme	A0A0A8KXN5	Burkholderia_phage	3.0e-26	48.1
WP_012697100.1\|1573685_1573931_-	hypothetical protein	NA	NA	NA	NA
WP_190273286.1\|1574489_1575722_-\|tail	tail fiber protein	A0A0B5A509	Achromobacter_phage	2.1e-34	35.4
WP_012697103.1\|1575839_1576346_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_012697104.1\|1576354_1577506_-	hypothetical protein	Q6QI97	Burkholderia_phage	2.1e-12	31.5
WP_012697105.1\|1577502_1578093_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	3.5e-27	41.0
WP_012697106.1\|1578089_1579175_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	8.9e-61	40.3
WP_012697107.1\|1579158_1579533_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_012697108.1\|1579519_1580617_-	regulatory protein	A4JWL3	Burkholderia_virus	3.6e-70	42.6
WP_012697109.1\|1580604_1580823_-\|tail	tail protein X	A4JWL2	Burkholderia_virus	6.8e-13	50.0
WP_012697110.1\|1580826_1581372_-\|tail	phage tail protein	NA	NA	NA	NA
WP_012697111.1\|1581381_1583490_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	1.4e-46	31.6
WP_143714461.1\|1583908_1584808_+	isochorismatase family protein	NA	NA	NA	NA
WP_012697114.1\|1585050_1585695_-	KilA-N domain-containing protein	A0A0H5ARR4	Pseudomonas_phage	1.4e-26	46.0
WP_012697115.1\|1585989_1586256_-	hypothetical protein	NA	NA	NA	NA
WP_012697117.1\|1586259_1586775_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	8.9e-27	39.3
WP_012697118.1\|1586771_1588211_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	4.2e-143	55.3
WP_012697119.1\|1588214_1588391_-	hypothetical protein	NA	NA	NA	NA
WP_012697120.1\|1588393_1588846_-	hypothetical protein	NA	NA	NA	NA
WP_012697121.1\|1588781_1589219_-	hypothetical protein	NA	NA	NA	NA
WP_012697122.1\|1589202_1589403_-	hypothetical protein	NA	NA	NA	NA
WP_012697123.1\|1589415_1590435_-\|capsid	major capsid protein	A0A067ZI79	Vibrio_phage	1.2e-38	29.9
WP_012697124.1\|1590444_1590807_-\|head	head decoration protein	NA	NA	NA	NA
WP_012697125.1\|1590816_1592082_-	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	1.5e-54	45.4
WP_012697128.1\|1592547_1593657_-	CBS domain-containing protein	NA	NA	NA	NA
WP_012697129.1\|1593813_1594380_-\|plate	phage baseplate assembly protein V	A4PE41	Ralstonia_virus	1.1e-14	31.3
WP_012697130.1\|1594372_1595908_-\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	2.1e-84	37.6
WP_012697131.1\|1595919_1596150_-	hypothetical protein	NA	NA	NA	NA
WP_143714462.1\|1596153_1598127_-\|terminase	phage terminase large subunit family protein	A0A2D1GMT1	Marinobacter_phage	7.8e-148	44.4
WP_012697133.1\|1598095_1598611_-\|terminase	terminase small subunit	A0A2D1GMW4	Marinobacter_phage	3.9e-14	43.7
WP_143714463.1\|1598654_1598969_+	hypothetical protein	NA	NA	NA	NA
WP_012697135.1\|1599066_1599801_-	hypothetical protein	A0A1W6JTE1	Pseudomonas_phage	2.0e-27	36.7
WP_143714464.1\|1599891_1600278_-	hypothetical protein	NA	NA	NA	NA
WP_012697137.1\|1600515_1600905_-	hypothetical protein	NA	NA	NA	NA
WP_041825574.1\|1600926_1601964_-	hypothetical protein	NA	NA	NA	NA
WP_041825575.1\|1601963_1602305_-	hypothetical protein	NA	NA	NA	NA
WP_012697138.1\|1602304_1602910_-	Bro-N domain-containing protein	A0A0R6PGW1	Moraxella_phage	1.8e-26	45.8
WP_081433606.1\|1604095_1604458_+	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_012697141.1\|1604468_1604669_-	hypothetical protein	NA	NA	NA	NA
WP_012697142.1\|1604680_1604857_-	hypothetical protein	NA	NA	NA	NA
WP_012697143.1\|1604849_1605359_-	hypothetical protein	NA	NA	NA	NA
WP_081433607.1\|1605377_1605797_-	phage regulatory CII family protein	A0A2H4J3D5	uncultured_Caudovirales_phage	1.2e-13	57.7
WP_034984986.1\|1605903_1606116_-	hypothetical protein	NA	NA	NA	NA
WP_012697145.1\|1606170_1606557_+	helix-turn-helix transcriptional regulator	A0A286S2B2	Klebsiella_phage	3.8e-06	40.6
WP_041825580.1\|1606848_1607187_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041825582.1\|1607380_1607719_+	hypothetical protein	NA	NA	NA	NA
WP_190273236.1\|1608080_1608365_+	hypothetical protein	NA	NA	NA	NA
WP_012697150.1\|1608375_1609122_+	conjugal transfer protein TraL	NA	NA	NA	NA
WP_012697151.1\|1609118_1609868_+	hypothetical protein	NA	NA	NA	NA
WP_012697152.1\|1609864_1610503_+	3'-5' exoribonuclease	A0A2I7R065	Vibrio_phage	6.9e-21	31.3
WP_012697153.1\|1610499_1610682_+	hypothetical protein	NA	NA	NA	NA
WP_012697154.1\|1610671_1611115_+	hypothetical protein	NA	NA	NA	NA
WP_012697155.1\|1611111_1611366_+	pyocin activator PrtN family protein	S5MQM5	Escherichia_phage	1.2e-11	42.0
WP_012697156.1\|1611360_1612785_-\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	4.4e-84	44.3
WP_143714542.1\|1612926_1613925_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
1618687:1618703	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1659643 : 1693161

Burkholderia_phage(36.84%)

integrase,tail,capsid,terminase,protease,head,portal

attL 1657134:1657148|attR 1667393:1667407

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1657134:1657148	attL	NA	NA	NA	NA
WP_012697208.1\|1659643_1661002_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.8e-74	36.2
WP_012697209.1\|1661781_1663197_+	replicative DNA helicase	O80281	Escherichia_phage	1.5e-129	54.8
WP_012697210.1\|1663213_1663534_+	(2Fe-2S) ferredoxin domain-containing protein	NA	NA	NA	NA
WP_041825598.1\|1663538_1664153_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_012697213.1\|1665578_1666205_+	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_012697214.1\|1666270_1666780_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_012697215.1\|1666828_1668295_+	aminoacyl-histidine dipeptidase	NA	NA	NA	NA
1667393:1667407	attR	NA	NA	NA	NA
WP_081433611.1\|1668774_1669416_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	1.2e-44	42.0
WP_041825600.1\|1669524_1669968_+	hypothetical protein	NA	NA	NA	NA
WP_081433612.1\|1670056_1670299_+	hypothetical protein	NA	NA	NA	NA
WP_143714467.1\|1670414_1671116_+	hypothetical protein	NA	NA	NA	NA
WP_012697219.1\|1671243_1672011_-	DNA adenine methylase	A2I2Y7	Vibrio_virus	4.5e-99	64.3
WP_143714468.1\|1672012_1672165_-	Com family DNA-binding transcriptional regulator	A0A1S5NPS9	Burkholderia_phage	3.2e-09	64.1
WP_143714546.1\|1672357_1672696_-	hypothetical protein	NA	NA	NA	NA
WP_012697222.1\|1672797_1673262_-	lysozyme	A0A0A8KXN5	Burkholderia_phage	3.6e-27	50.4
WP_012697223.1\|1673243_1673453_-	hypothetical protein	NA	NA	NA	NA
WP_012697224.1\|1673452_1673977_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_143714469.1\|1673978_1674632_-	hypothetical protein	NA	NA	NA	NA
WP_143714470.1\|1674643_1676164_-	hypothetical protein	NA	NA	NA	NA
WP_012697227.1\|1676054_1678538_-	hypothetical protein	A5A3R1	Burkholderia_phage	6.4e-22	28.5
WP_012697228.1\|1678519_1678912_-	hypothetical protein	NA	NA	NA	NA
WP_012697229.1\|1678911_1679388_-	DUF1833 family protein	NA	NA	NA	NA
WP_143714547.1\|1679427_1679778_-	hypothetical protein	NA	NA	NA	NA
WP_012697231.1\|1679777_1682558_-\|tail	phage tail tape measure protein	A0A1V0E8B0	Vibrio_phage	2.7e-85	30.0
WP_012697232.1\|1682624_1682912_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.9e-18	49.5
WP_012697233.1\|1682898_1683144_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_052292567.1\|1683279_1683585_-	DUF1799 domain-containing protein	A0A2H4J4F7	uncultured_Caudovirales_phage	1.1e-11	48.6
WP_012697235.1\|1683590_1683902_-	hypothetical protein	NA	NA	NA	NA
WP_012697236.1\|1683916_1684567_-\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	9.1e-53	51.6
WP_012697237.1\|1684627_1684981_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_012697238.1\|1684967_1685513_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_012697239.1\|1685509_1685815_-\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	4.6e-07	44.2
WP_012697241.1\|1685811_1686111_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	1.9e-05	38.5
WP_012697240.1\|1686122_1686359_-	hypothetical protein	NA	NA	NA	NA
WP_012697242.1\|1686404_1687646_-\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	4.5e-101	52.6
WP_012697243.1\|1687711_1688470_-\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	2.1e-53	54.1
WP_012697244.1\|1688435_1689734_-\|portal	phage portal protein	C7BGG8	Burkholderia_phage	1.4e-68	37.9
WP_190273237.1\|1689730_1691389_-\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	3.6e-239	73.7
WP_143714471.1\|1691385_1691565_-	hypothetical protein	NA	NA	NA	NA
WP_012697247.1\|1692081_1692282_-	hypothetical protein	NA	NA	NA	NA
WP_143714548.1\|1692278_1692596_-	HNH endonuclease	B5WZZ4	Pseudomonas_phage	9.3e-27	53.9
WP_012697249.1\|1692651_1693161_-	hypothetical protein	H6WRU8	Salmonella_phage	2.6e-15	42.2

DBSCAN-SWA_7

1700544 : 1712643

Pseudomonas_phage(80.0%)

integrase

attL 1707517:1707531|attR 1718514:1718528

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012697255.1\|1700544_1700982_-	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	8.6e-39	61.2
WP_012697256.1\|1701071_1701572_+	hypothetical protein	A0A127KNL4	Pseudomonas_phage	4.9e-22	38.1
WP_143714472.1\|1701737_1702514_-	hypothetical protein	NA	NA	NA	NA
WP_012697258.1\|1702518_1703463_-	YdaU family protein	A0A0R6PKK6	Moraxella_phage	2.5e-19	47.1
WP_012697259.1\|1703469_1703925_-	phage regulatory CII family protein	NA	NA	NA	NA
WP_081433614.1\|1703927_1704194_-	helix-turn-helix domain-containing protein	A0A0H5AUC6	Pseudomonas_phage	8.1e-16	68.8
WP_041825610.1\|1704300_1704957_+	helix-turn-helix domain-containing protein	Q94MM0	Bordetella_phage	6.0e-44	45.3
WP_041825612.1\|1705184_1705502_+	hypothetical protein	NA	NA	NA	NA
WP_012697261.1\|1705498_1706314_+	PD-(D/E)XK nuclease family protein	J7HXJ4	Pseudomonas_phage	2.6e-57	46.9
WP_012697262.1\|1706331_1707267_+	hypothetical protein	H2BD49	Pseudomonas_phage	4.6e-66	49.8
WP_143714473.1\|1707278_1707479_+	hypothetical protein	NA	NA	NA	NA
WP_012697264.1\|1707491_1707908_+	hypothetical protein	NA	NA	NA	NA
1707517:1707531	attL	NA	NA	NA	NA
WP_012697265.1\|1707926_1708799_+	H-NS histone family protein	J7I0T4	Pseudomonas_phage	7.7e-23	40.0
WP_012697266.1\|1708850_1709192_+	hypothetical protein	NA	NA	NA	NA
WP_012697268.1\|1709454_1711287_+	AAA family ATPase	J7HXJ7	Pseudomonas_phage	7.4e-92	40.6
WP_012697269.1\|1711626_1712643_-\|integrase	site-specific integrase	A0A0A0YR56	Pseudomonas_phage	2.7e-83	53.7
1718514:1718528	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1888702 : 1908188

Mannheimia_phage(27.27%)

integrase,lysis,transposase

attL 1886888:1886902|attR 1914384:1914398

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1886888:1886902	attL	NA	NA	NA	NA
WP_012697456.1\|1888702_1889737_-	hypothetical protein	A0A0M3LRW6	Mannheimia_phage	1.5e-09	47.2
WP_012697457.1\|1889733_1890312_-	DUF2313 domain-containing protein	A0A2H4J9D6	uncultured_Caudovirales_phage	9.0e-20	35.9
WP_012697459.1\|1891311_1891665_-	phage GP46 family protein	A0A0M3LQK5	Mannheimia_phage	1.2e-27	53.0
WP_012697460.1\|1891755_1892031_+	hypothetical protein	NA	NA	NA	NA
WP_027824307.1\|1892027_1892240_-	hypothetical protein	NA	NA	NA	NA
WP_012697461.1\|1892187_1892913_-\|transposase	transposase	A0A0M3LPN5	Mannheimia_phage	1.8e-17	36.9
WP_012697462.1\|1892909_1893065_-	hypothetical protein	NA	NA	NA	NA
WP_034986059.1\|1893433_1893736_-	helix-turn-helix domain-containing protein	F6MII4	Haemophilus_phage	3.7e-17	62.7
WP_012697464.1\|1893876_1894665_+	helix-turn-helix transcriptional regulator	A5X9F5	Aeromonas_virus	4.2e-28	40.8
WP_012697465.1\|1895131_1895965_+	Rha family transcriptional regulator	Q8H9L9	Vibrio_phage	1.0e-32	61.1
WP_143714477.1\|1896191_1896932_-	hypothetical protein	NA	NA	NA	NA
WP_012697467.1\|1896939_1897638_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012697469.1\|1897981_1898200_-\|transposase	transposase	NA	NA	NA	NA
WP_143714478.1\|1898477_1899050_+	YceI family protein	NA	NA	NA	NA
WP_012697472.1\|1899280_1899766_-\|lysis	lysis protein	NA	NA	NA	NA
WP_012697474.1\|1900209_1900431_-	hypothetical protein	NA	NA	NA	NA
WP_012697475.1\|1900430_1900955_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_143714479.1\|1901255_1902350_-	hypothetical protein	NA	NA	NA	NA
WP_012697477.1\|1902355_1902562_-	hypothetical protein	Q775D5	Bordetella_phage	1.6e-11	50.0
WP_041825636.1\|1902620_1902926_-	hypothetical protein	NA	NA	NA	NA
WP_051190079.1\|1903112_1903415_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.2e-34	71.4
WP_012697480.1\|1903393_1904245_-	N-6 DNA methylase	A0A220A2U4	Liberibacter_phage	3.1e-16	33.3
WP_012697481.1\|1904466_1904799_-	hypothetical protein	NA	NA	NA	NA
WP_012697482.1\|1905575_1905791_-	hypothetical protein	NA	NA	NA	NA
WP_190273241.1\|1906205_1906571_-	hypothetical protein	NA	NA	NA	NA
WP_081433620.1\|1906857_1907160_-\|transposase	transposase	NA	NA	NA	NA
WP_143714482.1\|1907199_1907661_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_190273242.1\|1907654_1908188_+\|transposase	transposase	Q1MVF0	Enterobacteria_phage	1.0e-17	42.3
1914384:1914398	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2393626 : 2487007

Burkholderia_phage(34.29%)

plate,capsid,terminase,tail,head,portal,tRNA,holin,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051190044.1\|2393626_2394175_+\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	6.4e-07	32.9
WP_012697983.1\|2394128_2394617_+	L,D-transpeptidase	NA	NA	NA	NA
WP_143714564.1\|2394616_2395270_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_012697985.1\|2395313_2395730_+	DUF2721 domain-containing protein	NA	NA	NA	NA
WP_012697987.1\|2396203_2397304_-	chorismate synthase	A0A291AU41	Pandoravirus	1.6e-81	43.9
WP_012697988.1\|2397361_2398003_-	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_162142362.1\|2398771_2398987_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_012697990.1\|2398989_2399550_+	molecular chaperone	NA	NA	NA	NA
WP_012697991.1\|2399670_2400963_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_027824216.1\|2400896_2401421_+	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_012697992.1\|2401396_2401909_+\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_012697993.1\|2401959_2402370_-	hypothetical protein	NA	NA	NA	NA
WP_012697994.1\|2402366_2403848_-	DNA-directed DNA polymerase III	NA	NA	NA	NA
WP_012697995.1\|2404012_2404573_-	phasin family protein	NA	NA	NA	NA
WP_012697996.1\|2404821_2405505_+	septum site-determining protein MinC	NA	NA	NA	NA
WP_012697997.1\|2405568_2406378_+	septum site-determining protein MinD	NA	NA	NA	NA
WP_012697998.1\|2406381_2406651_+	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_012697999.1\|2406647_2407607_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	4.0e-12	24.8
WP_012698000.1\|2407793_2408114_+	hypothetical protein	NA	NA	NA	NA
WP_012698001.1\|2408192_2409617_+	MATE family efflux transporter	NA	NA	NA	NA
WP_012698002.1\|2409613_2410636_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_012698003.1\|2410681_2410927_+	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_012698004.1\|2411024_2411735_-	murein L,D-transpeptidase catalytic domain family protein	NA	NA	NA	NA
WP_051190043.1\|2411836_2412829_-	L,D-transpeptidase	NA	NA	NA	NA
WP_012698006.1\|2412958_2414389_-	inorganic phosphate transporter	NA	NA	NA	NA
WP_143714565.1\|2414683_2416075_+	multidrug transporter subunit MdtD	NA	NA	NA	NA
WP_012698009.1\|2423506_2425027_-	fumarate hydratase	NA	NA	NA	NA
WP_012698010.1\|2425159_2425606_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012698012.1\|2425740_2426487_-	NAD-dependent protein deacetylase	A0A220NU33	Escherichia_phage	4.8e-05	27.3
WP_012698013.1\|2426571_2427921_-	TrpB-like pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_041825696.1\|2428143_2429514_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.7e-48	32.7
WP_012698015.1\|2429627_2430551_-	CobD/CbiB family protein	NA	NA	NA	NA
WP_012698016.1\|2430683_2431937_-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_012698017.1\|2431955_2432195_-	BolA/IbaG family iron-sulfur metabolism protein	NA	NA	NA	NA
WP_012698018.1\|2432201_2432957_-	ABC transporter permease	NA	NA	NA	NA
WP_051190102.1\|2433943_2434849_-	prephenate dehydrogenase/arogenate dehydrogenase family protein	NA	NA	NA	NA
WP_012698021.1\|2435058_2435865_-	aminodeoxychorismate lyase	NA	NA	NA	NA
WP_052292634.1\|2435867_2436725_-	Rossmann-like and DUF2520 domain-containing protein	NA	NA	NA	NA
WP_012698023.1\|2436816_2438094_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	4.8e-13	27.3
WP_012698025.1\|2440820_2441483_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA
WP_012698026.1\|2441619_2442900_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-99	53.5
WP_012698027.1\|2442994_2443456_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_012698028.1\|2443452_2444385_-	DMT family transporter	NA	NA	NA	NA
WP_012698029.1\|2444537_2444996_-	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_012698030.1\|2445157_2446537_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_012698032.1\|2447008_2448841_-	DUF3488 domain-containing protein	NA	NA	NA	NA
WP_012698033.1\|2448837_2449722_-	hypothetical protein	NA	NA	NA	NA
WP_012698034.1\|2449718_2450606_-	AAA family ATPase	NA	NA	NA	NA
WP_012698035.1\|2450796_2453124_-	ribonuclease R	Q0GXV6	Lactococcus_phage	1.8e-74	36.0
WP_012698036.1\|2453616_2453970_-\|tRNA	tRNA-binding protein	NA	NA	NA	NA
WP_143714566.1\|2454084_2455953_-	radical SAM protein	NA	NA	NA	NA
WP_012698040.1\|2456539_2457154_-	lysophospholipase	NA	NA	NA	NA
WP_012698041.1\|2457503_2458391_+	DMT family transporter	NA	NA	NA	NA
WP_012698042.1\|2458640_2460098_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_190273298.1\|2460060_2460348_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_027824283.1\|2461397_2462741_+	type II toxin-antitoxin system HipA family toxin YjjJ	NA	NA	NA	NA
WP_012698046.1\|2462790_2463825_-\|portal	phage portal protein	A4PE27	Ralstonia_virus	4.6e-131	64.3
WP_190273295.1\|2463821_2465567_-\|terminase	terminase	E5E3S6	Burkholderia_phage	8.9e-196	58.1
WP_012695905.1\|2465695_2466517_+\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	2.1e-62	60.6
WP_081433645.1\|2466529_2467087_+\|capsid	P2 family phage major capsid protein	Q9ZXM3	Pseudomonas_virus	2.3e-44	59.4
WP_012695905.1\|2468395_2469217_+\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	2.1e-62	60.6
WP_012695904.1\|2469229_2470258_+\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	5.8e-110	59.4
WP_012695903.1\|2470254_2470947_+\|terminase	terminase	K4NX86	Burkholderia_phage	1.9e-48	50.7
WP_012695902.1\|2471039_2471507_+\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	6.2e-27	45.5
WP_012695901.1\|2471506_2471713_+\|tail	tail protein X	Q9ZXL9	Pseudomonas_virus	1.4e-15	59.1
WP_012698049.1\|2471719_2472088_+\|holin	phage holin family protein	E5E3R9	Burkholderia_phage	7.5e-20	50.4
WP_012695899.1\|2472084_2472369_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_012695898.1\|2472356_2473160_+	N-acetylmuramidase family protein	E5E3R7	Burkholderia_phage	8.0e-75	58.5
WP_012695897.1\|2473156_2473588_+	hypothetical protein	NA	NA	NA	NA
WP_012695896.1\|2473669_2473900_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_012695895.1\|2473892_2474336_+\|tail	phage tail protein	E5E3R4	Burkholderia_phage	5.3e-28	50.0
WP_012698050.1\|2474332_2474773_+	phage virion morphogenesis protein	A0A1S5NPT5	Burkholderia_phage	4.2e-25	49.3
WP_012698051.1\|2474841_2475507_+\|plate	phage baseplate assembly protein V	E5E3R1	Burkholderia_phage	5.9e-39	42.9
WP_041825442.1\|2475503_2475854_+	GPW/gp25 family protein	A0A1S5NNH3	Burkholderia_phage	4.9e-21	48.6
WP_041825811.1\|2475877_2476765_+\|plate	baseplate J/gp47 family protein	A0A0F7LCQ9	Escherichia_phage	3.0e-83	57.3
WP_012698052.1\|2476757_2477384_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	3.1e-58	54.6
WP_012695888.1\|2477383_2478439_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	6.0e-54	60.8
WP_012695887.1\|2478452_2479013_+	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_143714421.1\|2479187_2479346_+	Com family DNA-binding transcriptional regulator	A0A1S5NPS9	Burkholderia_phage	6.2e-08	60.0
WP_012695885.1\|2479347_2480115_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	4.8e-101	66.9
WP_143714493.1\|2480246_2480498_+	hypothetical protein	NA	NA	NA	NA
WP_012695883.1\|2480610_2481786_+\|tail	phage tail sheath protein	A4PE49	Ralstonia_virus	4.2e-157	71.8
WP_012695882.1\|2481795_2482305_+\|tail	phage major tail tube protein	E5E3Q2	Burkholderia_phage	7.9e-52	60.7
WP_012695881.1\|2482319_2482613_+\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	1.6e-20	60.5
WP_012695880.1\|2482621_2482735_+\|tail	GpE family phage tail protein	E5FFG6	Burkholderia_phage	1.7e-07	70.6
WP_012698054.1\|2482735_2485351_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	6.8e-107	41.2
WP_012698055.1\|2485355_2485823_+\|tail	phage tail protein	E5E3P8	Burkholderia_phage	4.0e-42	65.1
WP_012698056.1\|2485804_2487007_+	phage late control D family protein	R9QBT3	Mannheimia_phage	2.9e-97	52.4

DBSCAN-SWA_10

2690175 : 2701230

Staphylococcus_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143714568.1\|2690175_2691507_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	7.7e-14	27.0
WP_081433658.1\|2691583_2692393_-	ABC transporter permease	NA	NA	NA	NA
WP_143714569.1\|2692389_2693106_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_012698242.1\|2693108_2694167_-	NAD-dependent epimerase/dehydratase family protein	A0A1V0SKV4	Klosneuvirus	1.8e-21	26.0
WP_012698243.1\|2694180_2695113_-	NAD-dependent epimerase/dehydratase family protein	A0A2K9L0I7	Tupanvirus	3.1e-14	24.2
WP_012698244.1\|2695127_2696063_-	NAD-dependent epimerase/dehydratase family protein	A0A2H4UUK0	Bodo_saltans_virus	5.2e-17	32.0
WP_012698245.1\|2696106_2697186_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAI1	Catovirus	5.7e-52	34.0
WP_190273296.1\|2697182_2698274_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2P1ELT3	Moumouvirus	2.2e-27	30.5
WP_012698248.1\|2698858_2699917_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_041826103.1\|2699934_2701230_-	Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB	A0A218MKK1	uncultured_virus	9.1e-12	25.7

DBSCAN-SWA_11

2908641 : 2915373

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012698435.1\|2908641_2909190_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.5e-45	56.1
WP_012698436.1\|2909245_2910115_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.2e-97	60.1
WP_190273258.1\|2910127_2911009_-	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	7.5e-26	32.6
WP_012698438.1\|2911008_2912076_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.3e-85	48.1
WP_012698439.1\|2912084_2913914_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	A0A1J0F994	Only_Syngen_Nebraska_virus	3.9e-133	43.9
WP_012698440.1\|2914008_2915373_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L821	Tupanvirus	3.6e-27	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage