Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_011660 Listeria monocytogenes HCC23, complete sequence 4 crisprs WYL,RT,DinG,cas3,DEDDh,cas2,cas5,cas7,cas8b2,cas6,casR,csa3 3 10 6 8

Results visualization

1. NC_011660
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011660_1 2094578-2096358 Unclear I-A
27 spacers
cas2,cas3,cas5,cas7,cas8b2,cas6

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011660_2 2111971-2112389 Unclear I-A
6 spacers
cas6

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011660_3 2143264-2143848 Orphan NA
7 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011660_4 2275647-2275851 Orphan NA
3 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NC_011660_1 1.17|2095647|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095647-2095683 37 NC_011660.1 2573205-2573241 0 1.0
NC_011660_1 1.4|2094802|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2094802-2094837 36 NC_011660.1 2926687-2926722 2 0.944
NC_011660_1 1.9|2095126|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095126-2095161 36 NC_011660.1 1388852-1388887 2 0.944

1. spacer 1.17|2095647|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to position: 2573205-2573241, mismatch: 0, identity: 1.0

tatcacggaagtgcaagagtcggagagttctgtagat	CRISPR spacer
tatcacggaagtgcaagagtcggagagttctgtagat	Protospacer
*************************************

2. spacer 1.4|2094802|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to position: 2926687-2926722, mismatch: 2, identity: 0.944

aggaatttccagaggagcatactcgcacattgaaaa	CRISPR spacer
aggaatttccagaggagcttactcgcatattgaaaa	Protospacer
****************** ********.********

3. spacer 1.9|2095126|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to position: 1388852-1388887, mismatch: 2, identity: 0.944

atgaagatgatttcaaactagctacagataaagata	CRISPR spacer
atgaagatgattttaaactagctacagatgaagata	Protospacer
*************.***************.******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_011660_1 1.15|2095515|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095515-2095551 37 AJ312240 Bacteriophage PSA complete genome 21457-21493 0 1.0
NC_011660_1 1.21|2095909|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095909-2095944 36 NC_009813 Listeria phage B054, complete genome 25999-26034 0 1.0
NC_011660_1 1.7|2094995|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2094995-2095030 36 DQ003637 Listeria phage A500, complete genome 25196-25231 1 0.972
NC_011660_1 1.21|2095909|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095909-2095944 36 MH341453 Listeria phage PSU-VKH-LP041, complete genome 26472-26507 1 0.972
NC_011660_1 1.4|2094802|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2094802-2094837 36 MH341452 Listeria phage PSU-VKH-LP040, complete genome 25212-25247 2 0.944
NC_011660_1 1.4|2094802|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2094802-2094837 36 DQ003637 Listeria phage A500, complete genome 26746-26781 2 0.944
NC_011660_1 1.7|2094995|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2094995-2095030 36 KJ094022 Listeria phage LP-030-3, complete genome 32172-32207 2 0.944
NC_011660_1 1.7|2094995|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2094995-2095030 36 MH341452 Listeria phage PSU-VKH-LP040, complete genome 23234-23269 2 0.944
NC_011660_1 1.7|2094995|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2094995-2095030 36 KP399678 Listeria phage vB_LmoS_293, complete genome 23735-23770 2 0.944
NC_011660_1 1.8|2095060|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095060-2095096 37 KJ094022 Listeria phage LP-030-3, complete genome 24012-24048 2 0.946
NC_011660_1 1.9|2095126|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095126-2095161 36 NZ_LR134403 Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence 231210-231245 2 0.944
NC_011660_1 1.9|2095126|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095126-2095161 36 NC_003216 Listeria phage A118, complete genome 22480-22515 2 0.944
NC_011660_1 1.9|2095126|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095126-2095161 36 AJ242593 Bacteriophage A118 complete genome 22480-22515 2 0.944
NC_011660_1 1.15|2095515|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095515-2095551 37 NC_009812 Listeria phage B025, complete genome 26375-26411 2 0.946
NC_011660_1 1.15|2095515|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095515-2095551 37 KJ094023 Listeria phage LP-101, complete genome 25873-25909 2 0.946
NC_011660_1 1.20|2095843|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095843-2095879 37 KJ094023 Listeria phage LP-101, complete genome 20315-20351 2 0.946
NC_011660_1 1.15|2095515|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095515-2095551 37 MT500540 Listeria phage LP-HM00113468, complete genome 20325-20361 3 0.919
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 JB137888 Sequence 7 from Patent WO2012159774 48410-48445 4 0.889
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 KJ094025 Listeria phage LP-032 contig 2, partial genome 37781-37816 4 0.889
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 MH299806 Listeria phage LP-KV022, complete genome 5235-5270 4 0.889
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 MN114083 Listeria phage LP-013, complete genome 65380-65415 4 0.889
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 NC_021785 Listeria phage LP-110, complete genome 28081-28116 4 0.889
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 MN128593 Listeria phage LP-031, complete genome 65188-65223 4 0.889
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 NC_021787 Listeria phage LP-037, complete genome 22112-22147 4 0.889
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 MN904502 Listeria phage LP-018, complete genome 65004-65039 4 0.889
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 KJ094020 Listeria phage LP-026, complete genome 49282-49317 4 0.889
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 KJ094021 Listeria phage LP-114, complete genome 55231-55266 4 0.889
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 MN114082 Listeria phage LP-010, complete genome 64349-64384 4 0.889
NC_011660_1 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT 2094607-2094642 36 JX442241 Listeria phage P70, complete genome 5235-5270 4 0.889
NC_011660_1 1.20|2095843|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095843-2095879 37 NZ_LR134403 Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence 230207-230243 4 0.892
NC_011660_1 1.20|2095843|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095843-2095879 37 MK075006 Staphylococcus phage phiSP119-3, complete genome 26312-26348 7 0.811
NC_011660_1 1.20|2095843|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095843-2095879 37 AP019562 Staphylococcus phage SP276 DNA, complete genome 35339-35375 7 0.811
NC_011660_1 1.20|2095843|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2095843-2095879 37 MK075003 Staphylococcus phage phiSP44-1, complete genome 22926-22962 7 0.811
NC_011660_1 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2096296-2096329 34 LC557520 Staphylococcus phage vB_SsapH-Golestan101-M DNA, complete genome 116646-116679 8 0.765
NC_011660_1 1.2|2094672|35|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2094672-2094706 35 HC318808 Sequence 63 from Patent WO2010000854 1719-1753 9 0.743
NC_011660_1 1.2|2094672|35|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2094672-2094706 35 HC318804 Sequence 59 from Patent WO2010000854 1722-1756 9 0.743
NC_011660_1 1.2|2094672|35|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2094672-2094706 35 HC318806 Sequence 61 from Patent WO2010000854 1722-1756 9 0.743
NC_011660_1 1.2|2094672|35|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2094672-2094706 35 JQ011317 Escherichia phage TL-2011b, complete genome 37437-37471 9 0.743
NC_011660_1 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2096296-2096329 34 NC_030946 Streptococcus phage phiARI0923, complete genome 18825-18858 9 0.735
NC_011660_1 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2096296-2096329 34 KY065482 Streptococcus phage IPP42, complete genome 14204-14237 9 0.735
NC_011660_1 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2096296-2096329 34 KY065483 Streptococcus phage IPP43, complete genome 14644-14677 9 0.735
NC_011660_1 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2096296-2096329 34 KY065489 Streptococcus phage IPP51, complete genome 14642-14675 9 0.735
NC_011660_1 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2096296-2096329 34 KY065484 Streptococcus phage IPP44, complete genome 14361-14394 9 0.735
NC_011660_1 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2096296-2096329 34 KY065481 Streptococcus phage IPP41, complete genome 14025-14058 9 0.735
NC_011660_1 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2096296-2096329 34 NC_027396 Streptococcus phage SpSL1, complete genome 2030-2063 9 0.735
NC_011660_1 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2096296-2096329 34 KY065449 Streptococcus phage IPP5, complete genome 15402-15435 9 0.735
NC_011660_1 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR 2096296-2096329 34 MN694145 Marine virus AFVG_250M840, complete genome 29048-29081 9 0.735

1. spacer 1.15|2095515|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 0, identity: 1.0

ctttggcagaggaagttggtcatcatcatttgactgt	CRISPR spacer
ctttggcagaggaagttggtcatcatcatttgactgt	Protospacer
*************************************

2. spacer 1.21|2095909|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 0, identity: 1.0

taatgtcatatagtatcatatcaataaaaagcgttg	CRISPR spacer
taatgtcatatagtatcatatcaataaaaagcgttg	Protospacer
************************************

3. spacer 1.7|2094995|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 1, identity: 0.972

ccaaaaaatgcacaaaataacctagaagttaaaacc	CRISPR spacer
ccaaaacatgcacaaaataacctagaagttaaaacc	Protospacer
****** *****************************

4. spacer 1.21|2095909|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 1, identity: 0.972

taatgtcatatagtatcatatcaataaaaagcgttg	CRISPR spacer
tgatgtcatatagtatcatatcaataaaaagcgttg	Protospacer
*.**********************************

5. spacer 1.4|2094802|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 2, identity: 0.944

aggaatttccagaggagcatactcgcacattgaaaa	CRISPR spacer
aggaatttccagaggagcttactcgcatattgaaaa	Protospacer
****************** ********.********

6. spacer 1.4|2094802|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to DQ003637 (Listeria phage A500, complete genome) position: , mismatch: 2, identity: 0.944

aggaatttccagaggagcatactcgcacattgaaaa	CRISPR spacer
aggaatttctagaggagcatactcacacattgaaaa	Protospacer
*********.**************.***********

7. spacer 1.7|2094995|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.944

ccaaaaaatgcacaaaataacctagaagttaaaacc	CRISPR spacer
ccaaaacatgcacaaaataacctagaagttaaaaca	Protospacer
****** **************************** 

8. spacer 1.7|2094995|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to MH341452 (Listeria phage PSU-VKH-LP040, complete genome) position: , mismatch: 2, identity: 0.944

ccaaaaaatgcacaaaataacctagaagttaaaacc	CRISPR spacer
ccgaaacatgcacaaaataacctagaagttaaaacc	Protospacer
**.*** *****************************

9. spacer 1.7|2094995|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 2, identity: 0.944

ccaaaaaatgcacaaaataacctagaagttaaaacc	CRISPR spacer
ccgaaacatgcacaaaataacctagaagttaaaacc	Protospacer
**.*** *****************************

10. spacer 1.8|2095060|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 2, identity: 0.946

accggaaaacaaatttaggcttgatttctttactttc	CRISPR spacer
gtcggaaaacaaatttaggcttgatttctttactttc	Protospacer
..***********************************

11. spacer 1.9|2095126|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.944

atgaagatgatttcaaactagctacagataaagata	CRISPR spacer
atgaagatgattttaaactagctacagatgaagata	Protospacer
*************.***************.******

12. spacer 1.9|2095126|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.944

atgaagatgatttcaaactagctacagataaagata	CRISPR spacer
atgaagatgattttaaactagctacagatgaagata	Protospacer
*************.***************.******

13. spacer 1.9|2095126|36|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.944

atgaagatgatttcaaactagctacagataaagata	CRISPR spacer
atgaagatgattttaaactagctacagatgaagata	Protospacer
*************.***************.******

14. spacer 1.15|2095515|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 2, identity: 0.946

ctttggcagaggaagttggtcatcatcatttgactgt	CRISPR spacer
cattggcagaggaacttggtcatcatcatttgactgt	Protospacer
* ************ **********************

15. spacer 1.15|2095515|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.946

ctttggcagaggaagttggtcatcatcatttgactgt	CRISPR spacer
cattggcagaggaacttggtcatcatcatttgactgt	Protospacer
* ************ **********************

16. spacer 1.20|2095843|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.946

atgaaatcttaaaaaagagaaagaacagcaagaagca	CRISPR spacer
attgaatcttaaaaaagagaaagaacagcaagaagca	Protospacer
** .*********************************

17. spacer 1.15|2095515|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 3, identity: 0.919

ctttggcagaggaagttggtcatcatcatttgactgt	CRISPR spacer
cattagcagaggaagttggacatcatcatttgactgt	Protospacer
* **.************** *****************

18. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagcttttacaggtgctttatttaa	Protospacer
******************************.** . 

19. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to KJ094025 (Listeria phage LP-032 contig 2, partial genome) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagcttttacaggtgctttatttaa	Protospacer
******************************.** . 

20. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagcttttacaggtgctttatttaa	Protospacer
******************************.** . 

21. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagcttttacaggtgctttatttaa	Protospacer
******************************.** . 

22. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagcttttacaggtgctttatttaa	Protospacer
******************************.** . 

23. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagcttttacaggtgctttatttaa	Protospacer
******************************.** . 

24. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagcttttacaggtgctttatttaa	Protospacer
******************************.** . 

25. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagcttttacaggtgctttatttaa	Protospacer
******************************.** . 

26. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagcttttacaggtgctttatttaa	Protospacer
******************************.** . 

27. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagcttttacaggtgctttatttaa	Protospacer
******************************.** . 

28. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagcttttacaggtgctttatttaa	Protospacer
******************************.** . 

29. spacer 1.1|2094607|36|NC_011660|CRISPRCasFinder,CRT matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 4, identity: 0.889

tccgattgcattagcttttacaggtgctttgttagt	CRISPR spacer
tccgattgcattagctttcacaggtgctttatttat	Protospacer
******************.***********.** .*

30. spacer 1.20|2095843|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 4, identity: 0.892

atgaaatcttaaaaaagagaaagaacagcaagaagca	CRISPR spacer
attgaatcttaaaaaagagaaagaacggcaagaagcg	Protospacer
** .**********************.*********.

31. spacer 1.20|2095843|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to MK075006 (Staphylococcus phage phiSP119-3, complete genome) position: , mismatch: 7, identity: 0.811

----atgaaatcttaaaaaagagaaagaacagcaagaagca	CRISPR spacer
tcgaatgaagc----aaaaagagaaagaaaagcaagaagca	Protospacer
    *****..    ************** ***********

32. spacer 1.20|2095843|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to AP019562 (Staphylococcus phage SP276 DNA, complete genome) position: , mismatch: 7, identity: 0.811

----atgaaatcttaaaaaagagaaagaacagcaagaagca	CRISPR spacer
tcgaatgaagc----aaaaagagaaagaaaagcaagaagca	Protospacer
    *****..    ************** ***********

33. spacer 1.20|2095843|37|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to MK075003 (Staphylococcus phage phiSP44-1, complete genome) position: , mismatch: 7, identity: 0.811

----atgaaatcttaaaaaagagaaagaacagcaagaagca	CRISPR spacer
tcgaatgaagc----aaaaagagaaagaaaagcaagaagca	Protospacer
    *****..    ************** ***********

34. spacer 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to LC557520 (Staphylococcus phage vB_SsapH-Golestan101-M DNA, complete genome) position: , mismatch: 8, identity: 0.765

aagttaaaagtgtctaaagaaaaagccaaaaaaa	CRISPR spacer
aggaaatgtgtatctaaagaaaaagctaaaaaaa	Protospacer
*.*  * . **.**************.*******

35. spacer 1.2|2094672|35|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to HC318808 (Sequence 63 from Patent WO2010000854) position: , mismatch: 9, identity: 0.743

ggacgctaattttgtaaatccgtttttcattgtta	CRISPR spacer
cgcatttgattttgtaaatccgtattgcattgtca	Protospacer
 *   .*.*************** ** ******.*

36. spacer 1.2|2094672|35|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to HC318804 (Sequence 59 from Patent WO2010000854) position: , mismatch: 9, identity: 0.743

ggacgctaattttgtaaatccgtttttcattgtta	CRISPR spacer
cgcatttgattttgtaaatccgtattgcattgtca	Protospacer
 *   .*.*************** ** ******.*

37. spacer 1.2|2094672|35|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to HC318806 (Sequence 61 from Patent WO2010000854) position: , mismatch: 9, identity: 0.743

ggacgctaattttgtaaatccgtttttcattgtta	CRISPR spacer
cgcatttgattttgtaaatccgtattgcattgtca	Protospacer
 *   .*.*************** ** ******.*

38. spacer 1.2|2094672|35|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to JQ011317 (Escherichia phage TL-2011b, complete genome) position: , mismatch: 9, identity: 0.743

ggacgctaattttgtaaatccgtttttcattgtta	CRISPR spacer
cgcatttgattttgtaaatccgtattgcattgtca	Protospacer
 *   .*.*************** ** ******.*

39. spacer 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to NC_030946 (Streptococcus phage phiARI0923, complete genome) position: , mismatch: 9, identity: 0.735

aagttaaaagtgtctaaagaaaaagccaaaaaaa	CRISPR spacer
cctttaaaagtgtataaagaaaaagctaagatgg	Protospacer
   ********** ************.**.* ..

40. spacer 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to KY065482 (Streptococcus phage IPP42, complete genome) position: , mismatch: 9, identity: 0.735

aagttaaaagtgtctaaagaaaaagccaaaaaaa	CRISPR spacer
cctttaaaagtgtataaagaaaaagctaagatgg	Protospacer
   ********** ************.**.* ..

41. spacer 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to KY065483 (Streptococcus phage IPP43, complete genome) position: , mismatch: 9, identity: 0.735

aagttaaaagtgtctaaagaaaaagccaaaaaaa	CRISPR spacer
cctttaaaagtgtataaagaaaaagctaagatgg	Protospacer
   ********** ************.**.* ..

42. spacer 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to KY065489 (Streptococcus phage IPP51, complete genome) position: , mismatch: 9, identity: 0.735

aagttaaaagtgtctaaagaaaaagccaaaaaaa	CRISPR spacer
cctttaaaagtgtataaagaaaaagctaagatgg	Protospacer
   ********** ************.**.* ..

43. spacer 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to KY065484 (Streptococcus phage IPP44, complete genome) position: , mismatch: 9, identity: 0.735

aagttaaaagtgtctaaagaaaaagccaaaaaaa	CRISPR spacer
cctttaaaagtgtataaagaaaaagctaagatgg	Protospacer
   ********** ************.**.* ..

44. spacer 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to KY065481 (Streptococcus phage IPP41, complete genome) position: , mismatch: 9, identity: 0.735

aagttaaaagtgtctaaagaaaaagccaaaaaaa	CRISPR spacer
cctttaaaagtgtataaagaaaaagctaagatgg	Protospacer
   ********** ************.**.* ..

45. spacer 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to NC_027396 (Streptococcus phage SpSL1, complete genome) position: , mismatch: 9, identity: 0.735

aagttaaaagtgtctaaagaaaaagccaaaaaaa	CRISPR spacer
cctttaaaagtgtataaagaaaaagctaagatgg	Protospacer
   ********** ************.**.* ..

46. spacer 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to KY065449 (Streptococcus phage IPP5, complete genome) position: , mismatch: 9, identity: 0.735

aagttaaaagtgtctaaagaaaaagccaaaaaaa	CRISPR spacer
cctttaaaagtgtataaagaaaaagctaagatgg	Protospacer
   ********** ************.**.* ..

47. spacer 1.27|2096296|34|NC_011660|CRISPRCasFinder,CRT,PILER-CR matches to MN694145 (Marine virus AFVG_250M840, complete genome) position: , mismatch: 9, identity: 0.735

aagttaaaagtgtctaaagaaaaagccaaaaaaa	CRISPR spacer
aaaaatggagtgtctaaagaagaagccgaaaata	Protospacer
**.   ..*************.*****.**** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 116605 : 124433 7 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 799030 : 807316 8 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 1351756 : 1399268 55 Listeria_phage(71.43%) protease,holin,plate,tail NA
DBSCAN-SWA_4 1404200 : 1431218 45 Listeria_phage(95.12%) integrase,tail,terminase,portal,protease,capsid attL 1427594:1427609|attR 1432676:1432691
DBSCAN-SWA_5 2543216 : 2583809 60 Listeria_phage(89.13%) holin,tail,integrase,terminase,portal,protease,capsid attL 2544289:2544333|attR 2582691:2582735
DBSCAN-SWA_6 2919585 : 2967797 73 Listeria_phage(90.32%) integrase,tail,holin,tRNA,terminase,portal,capsid,plate attL 2918452:2918466|attR 2926923:2926937
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NC_011660.1|WP_012582157.1|2545309_2545573_+|AcrIIA4-family-anti-CRISPR-protein 2545309_2545573_+ 87 aa aa 14 NA NA 2543216-2583809 yes
NC_011660.1|WP_003723553.1|1366511_1366649_+|hypothetical-protein 1366511_1366649_+ 45 aa aa NA NA NA 1351756-1399268 yes
NC_011660.1|WP_003726053.1|1367894_1368089_+|hypothetical-protein 1367894_1368089_+ 64 aa aa NA NA NA 1351756-1399268 yes
NC_011660.1|WP_012581432.1|1385685_1386096_-|Cys-Gln-thioester-bond-forming-surface-protein 1385685_1386096_- 136 aa aa NA NA NA 1351756-1399268 yes
NC_011660.1|WP_003727743.1|2927208_2927475_+|hypothetical-protein 2927208_2927475_+ 88 aa aa NA NA NA 2919585-2967797 yes
NC_011660.1|WP_003735007.1|2927698_2927893_+|hypothetical-protein 2927698_2927893_+ 64 aa aa NA NA NA 2919585-2967797 yes
NC_011660.1|WP_012582372.1|2925333_2925939_-|hypothetical-protein 2925333_2925939_- 201 aa aa NA NA NA 2919585-2967797 yes
NC_011660.1|WP_012582373.1|2925993_2926161_-|hypothetical-protein 2925993_2926161_- 55 aa aa NA NA NA 2919585-2967797 yes