CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011365	Gluconacetobacter diazotrophicus PA1 5, complete sequence	4 crisprs	DEDDh,cas1,cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,csa3,cas8c,cas4	1	43	9	1
NC_011367	Gluconacetobacter diazotrophicus PA1 5 plasmid pGDIA01, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011365_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011365_1

388303-388602

Unclear

Consensus_repeat	Method
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	PILER-CR
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CRISPRCasFinder
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CRT

4 spacers

cas2,cas1

The CRISPR arrays of NC_011365_1

>merge|NC_011365|1|388303-388602|PILER-CR,CRISPRCasFinder,CRT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCTCAGCCGGCTGGGCATTGCCCTACGAGAGGAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCAGGGGAGCGCGTCACCTTCGACAAGGGCCTAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCCCTCGTTGCTCGCGCGCGGGTGCAGGGCTGAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGCTCCGCACGTTCACGCGTACCAGCATCGCGGAGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC

>NC_011365|1|1|388303-388602|PILER-CR
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	TCAGCCGGCTGGGCATTGCCCTACGAGAGG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	AGGGGAGCGCGTCACCTTCGACAAGGGCCT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CCTCGTTGCTCGCGCGCGGGTGCAGGGCTG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	TCCGCACGTTCACGCGTACCAGCATCGCGG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC

>NC_011365|1|1|388303-388602|CRISPRCasFinder
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	TCAGCCGGCTGGGCATTGCCCTACGAGAGG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	AGGGGAGCGCGTCACCTTCGACAAGGGCCT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CCTCGTTGCTCGCGCGCGGGTGCAGGGCTG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	TCCGCACGTTCACGCGTACCAGCATCGCGG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC

>NC_011365|1|1|388303-388602|CRT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	TCAGCCGGCTGGGCATTGCCCTACGAGAGG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	AGGGGAGCGCGTCACCTTCGACAAGGGCCT
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	CCTCGTTGCTCGCGCGCGGGTGCAGGGCTG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC	TCCGCACGTTCACGCGTACCAGCATCGCGG
AGCCTACCATCGGCAAATCGGTAGGGAAACCACGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011365.1\|WP_081434755.1\|397235_397487_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NC_011365.1\|WP_041249771.1\|393777_394659_-\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NC_011365.1\|WP_012225938.1\|394759_395431_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NC_011365.1\|WP_012553081.1\|395444_397214_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NC_011365.1\|WP_012225910.1\|387916_388246_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NC_011365.1\|WP_012553079.1\|392805_393651_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NC_011365.1\|WP_012553077.1\|391016_391655_-\|hypothetical-protein	unknown	unknown	unknown
NC_011365.1\|WP_157864088.1\|385809_386867_+\|IS630-like-element-ISGdi4-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_011365.1\|WP_012553073.1\|381531_381795_-\|DUF1150-family-protein	unknown	unknown	gnl\|CDD\|369004
NC_011365.1\|WP_012553075.1\|387013_387907_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NC_011365.1\|WP_012225918.1\|390233_391010_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NC_011365.1\|WP_012553078.1\|391651_392809_-\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NC_011365.1\|WP_012225904.1\|381908_382397_-\|Hsp20-family-protein	unknown	unknown	gnl\|CDD\|107227
NC_011365.1\|WP_012225900.1\|380873_381461_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|238308
NC_011365.1\|WP_012553071.1\|378600_379392_+\|LPS-export-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224060
NC_011365.1\|WP_012553070.1\|377515_378604_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|281901
NC_011365.1\|WP_012225914.1\|388734_389274_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NC_011365.1\|WP_012553076.1\|389319_390237_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NC_011365.1\|WP_012553072.1\|379402_380779_+\|RNA-polymerase-factor-sigma-54	unknown	unknown	gnl\|CDD\|235648
NC_011365.1\|WP_012553069.1\|376709_377519_+\|LPS-export-ABC-transporter-periplasmic-protein-LptC	unknown	unknown	gnl\|CDD\|227667

Protein	Function_ID	Function_description	E-value
NC_011365.1\|WP_081434755.1\|397235_397487_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	3.06657e-37
NC_011365.1\|WP_041249771.1\|393777_394659_-\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	4.05761e-160
NC_011365.1\|WP_012225938.1\|394759_395431_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	1.12156e-95
NC_011365.1\|WP_012553081.1\|395444_397214_-\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NC_011365.1\|WP_012225910.1\|387916_388246_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.97767e-35
NC_011365.1\|WP_012553079.1\|392805_393651_-\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	1.36566e-174
NC_011365.1\|WP_157864088.1\|385809_386867_+\|IS630-like-element-ISGdi4-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.1108e-22
NC_011365.1\|WP_012553073.1\|381531_381795_-\|DUF1150-family-protein	gnl\|CDD\|369004	pfam06620, DUF1150, Protein of unknown function (DUF1150). This family consists of several hypothetical bacterial proteins of unknown function.	6.84269e-12
NC_011365.1\|WP_012553075.1\|387013_387907_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.56229e-109
NC_011365.1\|WP_012225918.1\|390233_391010_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.16901e-117
NC_011365.1\|WP_012553078.1\|391651_392809_-\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NC_011365.1\|WP_012225904.1\|381908_382397_-\|Hsp20-family-protein	gnl\|CDD\|107227	cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 600-kDa structures. This elevated activity seen under heat shock conditions is retained for an extended period of time after the temperature is returned to normal. IbpA also forms multimers.	1.2409e-36
NC_011365.1\|WP_012225900.1\|380873_381461_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	2.16078e-21
NC_011365.1\|WP_012553071.1\|378600_379392_+\|LPS-export-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224060	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only].	9.27942e-152
NC_011365.1\|WP_012553070.1\|377515_378604_+\|hypothetical-protein	gnl\|CDD\|281901	pfam03968, OstA, OstA-like protein. This family of proteins are mostly uncharacterized. However the family does include E. coli OstA that has been characterized as an organic solvent tolerance protein.	4.17909e-06
NC_011365.1\|WP_012225914.1\|388734_389274_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.36597e-67
NC_011365.1\|WP_012553076.1\|389319_390237_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	2.01503e-150
NC_011365.1\|WP_012553072.1\|379402_380779_+\|RNA-polymerase-factor-sigma-54	gnl\|CDD\|235648	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.	0
NC_011365.1\|WP_012553069.1\|376709_377519_+\|LPS-export-ABC-transporter-periplasmic-protein-LptC	gnl\|CDD\|227667	COG5375, COG5375, Uncharacterized protein conserved in bacteria [Function unknown].	4.01191e-11

>NC_011365.1|WP_012225910.1|387916_388246_+|CRISPR-associated-endonuclease-Cas2
MKAEDIRFMWLLVFFDLPVRTKEQRRRASRFRHFLKDDGFLMLQFSVYARICRGQDAVEKHVRRVRSNLPKEGSVRTLQITDRQYGRMELMLGLAPKTERIGPSQMVLL
>NC_011365.1|WP_012553075.1|387013_387907_+|type-II-CRISPR-associated-endonuclease-Cas1
MAWRGVHISHPSRLTHRNRQLVVAQDGGEVSLAVEDIACLILDTRQVSITGSLLSALAENGVAMIVPDARHHPAGILLPFHQHHAQAHIAHAQISISQPLKKRLWQTLVVAKIRNQAALLDQLGRPQGQTIAAMAGRVASGDPGNVEAQAARAYWASLFSDFTRANENDRRNALLNYGYAIMRAAIARACVALGLLPAFGVHHASKTNAFNLVDDLIEPFRPFVDRMAHDRALEHVGDTLSIEDRRQMSTILNDNAAIGRERMTVLAATEAVAMSVVRAIEHGSAALLSTPTLKARD
>NC_011365.1|WP_157864088.1|385809_386867_+|IS630-like-element-ISGdi4-family-transposase
MGGALALREDYDAAGLRALARTTRHAGQARRLLALAAIYDGASRGDAARLAGTDRQIVRDWVVRFNAEGPDGVRDHHGGGVVPRLTPAMLEALMRRIEDGPIAAVHGVVRWRQADLGQWLYEEFGVSLSRSRLSAVIRGLDFRLLTGRPRHHAQDPEAQDVFKKGFPDVMAGIRARHPGKAIELWWGDEARVGQKTKLTRRWARRGTRPRAPADQRTRSAWIFGAICPALGKGAALVLPWCNLHAMNRHLDEISQAVAPGAHAILIVDQAAWHTSPKLDIPANITILPLPPRSPELNPVENVWQFMRNTWLSNRIFRTYDDIVDICCHAWNQLVDQPWRIMSLGLRQWAHGF
>NC_011365.1|WP_012225904.1|381908_382397_-|Hsp20-family-protein
MSGRLFASPMFLGFDHLEQMLERASKGTADGYPPYNIEQISPTALRITLAVAGFVMEDLQITQEDNQLVIRGRQTDDSQGRVFLHRGIAARQFQKAFVLAEGIEVGNAWLDNGLLHIDLLRPQPEVRVRRIEITQGRASAPPAEIDLPKVRAQRVVRVIEED
>NC_011365.1|WP_012553073.1|381531_381795_-|DUF1150-family-protein
MRITTQNGRVVLQADQTSLPADVHHLTDTQLLSLGVSRMAYIKAVVIEGQDVFAIHAADGTPMALTEDEATAIEAILQHEMVPALVH
>NC_011365.1|WP_012225900.1|380873_381461_+|ribosome-associated-translation-inhibitor-RaiA
MQISVAGKQIDLSDALKHRVTAHLDRLADKFFDRALDAQVTFSRARSFFTCDINLHAARGLTLRGEGEAADAHGAFDDAAEHIARRLRRYRERVNDHIRTLPRRKTPEVGRSYILRPAESDGRVRGEAMHDTGPYATIVAERAAEIATLSVSEAVMRLDLAASTLLMFRNSTSDQINVIYRRQDGNIGWLDPSPA
>NC_011365.1|WP_012553072.1|379402_380779_+|RNA-polymerase-factor-sigma-54
MTIGPRLALRQAQTLVMTPQLRQAIHLLQLSNLDACSFIEQELERNPLLERANLAGLEELRPKVVAHGARHDPRLERVPDQDWAATTGTLPGPAPSLHERLAQQVRLSWRDAGDRLVGAYLITLLDADGRLVPPTAVIAQSLGTTFDHVERVRQTMMQFEPTGLFAHDLGECLAAQLRERDRLDPAMAVLLRHLDLLARRDLRRLQGLCGVDAEDLADMIAEVRTLSPRPARDFGDPAACSVIPDVLLQPAPDGDWMLELNPETMPSVVVNSALSTRVALRARREDRPFLNERLASANWLVRALQQRADTIIRVATAIMRRQRGFLDHGIGHLRPLVLRDIAETVGLHESTVSRVTANKYIATPRGLFELKYFFTTAIPGRAGGADHSAEAIRHRIKTLISQESDGKILSDDAIVTRLRKEGIDISRRTVAKYRDALRIPNSAQRKRDKALIGLKPEA
>NC_011365.1|WP_012553071.1|378600_379392_+|LPS-export-ABC-transporter-ATP-binding-protein
MNEIPYELAGDMQGTAIAHGLPAADGLIANGIGKTYKKRPVVRNVSIQVHRGEAVGLLGPNGAGKTTSFYMIVGLVQPDTGAITLDGTDITQLPMYRRARLGIGYLPQEASIFRGLNVEQNIMAALEVVEADPERREAMLDGLLGEFGISHLRRAPSLALSGGERRRLEIARALASQPHYILLDEPLAGIDPIAVGEIRDLVSHLKDRGIGVLITDHNVRETLEVIDRAYIMHSGQVLMEGRPEEIVANEDVRRVYLGENFSL
>NC_011365.1|WP_012553070.1|377515_378604_+|hypothetical-protein
MTAFPKVATALLLGGVAACVAPMGARGQALDLSHGGQITVTAAGGFDWDQKSQTVTAYDQAQAVRGNVTVTGDRLIAFYRKKAAAGAAQGGAPNNGAAAPASPPPAAQAPAPQAPATQSTGNGTDSGSNEVYRLNAIGHVHIFTDTDQAWGDKAIYDIDQSVMIMTGKAMKMVTPQDVLTARDSMEYYSQTRISIGRGNATVTTNDGRQIRADVLVGYSAPAQPATQSPAQPPPSPPPGTQPGAAPGTGKDPLTSSGKLEKVNAFGHVFVRTQTETVTGDRGVYVPDTGIARIVGNVHITRGQNQINGAAAIVNMHTGIATMTERAGSRVSGLIVPNEANSSPGGARPTQAGTKPGPAGKTP
>NC_011365.1|WP_012553069.1|376709_377519_+|LPS-export-ABC-transporter-periplasmic-protein-LptC
MSASPPPPSRDPTAPRREDFARSADDVARQRTVLHHRTTRARHLPNPDDIARRRMLVRWAKWVLPAAALALLGSIAAWPAIDRLVNAQRNALHEMENLRIESGNMLGATYRGLDDHNRPYMITADQAQQVTPDRINLTGPVADTFTQGNDWLTIRSDQGVYMQHEQLLDLTRNVVLYRADGVIMTGVTADMDLKQGIVASDQWVHAEGPFGVLDAQGFILSQHEGIGLFRGPGRLILNDDSHAHPPAATPSSAAPPASSTPPARTEPTR
>NC_011365.1|WP_012225914.1|388734_389274_+|peptide-deformylase
MIDRDAIAAAIPMPILVAPQAILRQKARPVRPEDAAGVRDALPRMFAAMYQAPGIGLAAPQVGMGLRFAIVDLGEEGERQPLILINPDVIAESDSLASREEGCLSLPNQYAEVIRPDRVRVRYRTLDGTEEELEADGLLATCIQHEIDHLEGILFVDHLSTLKRNMIMRRLAKEQRQKR
>NC_011365.1|WP_012553076.1|389319_390237_+|methionyl-tRNA-formyltransferase
MRLAFMGTPDFAVPALHALHEAGHEIAVVYSQPPRPAGRGQAVRPQPVHLAAEALGIPVRVPTRLRANHDEHAFFRALDLDAAVVAAYGLILPGAMLDAPRRGCLNVHASLLPRWRGAAPIQAAILAGDDESGVTIMQMDEGLDTGAMLLTGRVALTPATTASTLHDDLAAMGGRLIVAALANSETAAIPQPAEGATYAARLTREDGRIDWTRDAVDIDRQVRALTPWPGTFTTLDGTVLKIGAATPIDGPRDAVPGTVLDDRLTVACGQGTLRLTRIQRPGRGMMEADAFLRGQPVPVGTRLGS
>NC_011365.1|WP_012225918.1|390233_391010_+|tRNA-pseudouridine(38-40)-synthase-TruA
MTAPSLQRWAVRIEYDGRPFVGWQRQITGLSVQQVLEEAASRLASGRVVPSITAGRTDAGVHATGQAAHLDFPGDVRLNDSTVRDALNFHMKPYPVAVLRACPVDTEWSARFSAIRRSYRYRILNRRSRPTLDDGRVWLVKRTLDEAAMARAARLLLGRHDFTSFRASACQARSPLRTLDRLGVVRQGEEIVIEAEARSFLHHQVRNMVGTLKLVGEGLWAPDRVAAALAACDRRAAGPTAPPDGLYLTGVGYDPDPF
>NC_011365.1|WP_012553077.1|391016_391655_-|hypothetical-protein
MMQGRGVPQGPLPNSAGGIFRGMMLLGRGRREGLNCFGATQDSVLTALAPRVALWLVGALLTLVQAPTGLSGTKILFSLCLVLTPIIVTHQLARLWGREALWPRYMTAALWCDWLVLFVMLIAVAVVAMVLPAGLNAVHSALILNGIVFAYNLWLTWFIARVGLALGVWRAILVVLAVAAAILVLGEAAAVLPPHYAPWQDFLALPSAHAPQ
>NC_011365.1|WP_012553078.1|391651_392809_-|succinyl-diaminopimelate-desuccinylase
MTGALTPASTPALTLARDLIRAPSVTPDDGGAIGVLTAALRGLGFDVTDLPFGEGPARTPNLFARLGRSGPHLCFAGHTDVVPPGDGGWTSGPFEAALRDGRLYGRGACDMKGGIAAFVGAVARILESGRTLRGSVSLLITGDEEGPATFGTVKVLEWMAAHGQVPDFCVVGEPTNPDHLGDVIKIGRRGSLNARIVVPGIQGHVAYPHRADNPVHRLLAILSDLTARPLDQGTEWFEPSSLQVTTVDVGNEATNVIPGRATARLNIRFNDLHTGQGLADWIRGVAHVHAPGAEVTVQISGEAFRTEPTPELDMLAASIQAVTGRAPRLDTGGGTSDARFISRYCPVAEFGLVGASMHKVDEHVPVADLLALTDIYAAFLERLMG
>NC_011365.1|WP_012553079.1|392805_393651_-|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MNDEHALRTHIEAAWERRDTLSSATKGADREAVEHALAGLDSGALRVATPTDAGWVVNEWLKKAVLLSFRLNDSHVMPAAPAPFFDKVPLKFQGWDEAQFGQAAFRAVPGAIVRRSAYIAPGVVLMPSFVNAGARVESGTMVDTWVTIGSCAQIGRNCHISGGVGIGGVLEPLQAAPVIIEDDCFIGARSEVAEGVIVERGSVLSMGVFLSASTKIVDRTTGEVFVGRVPAYSVVVPGTLPPRTPHAADGTPLPALACAVIVKRVDERTRSKTSINELLRD
>NC_011365.1|WP_041249771.1|393777_394659_-|acetylglutamate-kinase
MQEAQERAAVLAQALPFLRRYAGDTIVVKYGGHAMVDDSLSNAFGHDIALLKLVGVNPVIVHGGGPQISAMLTRLQIPSTFVDGLRVTDAAMVDVIEMVLAGKVNKQVAGLINQAGALAVGISGKDGGLITARRLQRTTRDASGQERALDLGFVGEPTHIDPRVLYALSGSGLIPVVAPVGIGEAGETYNINADTAAGAIAGAVHATRLLMLTDVPGVLDETGALIPELTAEEARRGIASGMISGGMIPKVETCLEAVRSGARAAVILDGRVPHACLLELFTEAGPGTLIRGE
>NC_011365.1|WP_012225938.1|394759_395431_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MSDFNATPRTPDEEERLLEAGRLLFAGPCDFFFGAQKLEQLPPPGAPEIAFAGRSNVGKSSLINALTGRRALARASSEPGRTKQLNFFDLGGRLTLVDMPGYGYARAAKDVKEDWQGMMFAYLRGRPTLQRVILLLDSRIELKASDREIMTLLDRAAVTFQIVLTKCDAPRPGALEAKRSQAADLARQHPAAYPGTFATSSDTGLGIPELRAELAALALPQAG
>NC_011365.1|WP_012553081.1|395444_397214_-|membrane-protein-insertase-YidC
MDTKRFIVATLLSAMVLVGFEYFMPKQAHHEVAQQAAQTSRQTPPTDAARAPAPVAGASSQPVSTPAPQAETRLAIDAPKVAGSIDLLGARLDDMVLRDYHETVAKGSPQVRILEPGHDQQPNYVEIGWMNLPGGQVRVPDATTVWSADAPKLTSDRPVTLSWDNGAGVTFQIVVSIDAHYMFGIEQRIVNRSAQPVSLYPYARVDRAYTPTETGGYLVHEGPISVIDGRLDESSYKSLRTGATPPGNLSWTKGGQGGWAGITDKYWLTAVIPQQGTAVTGSYGYQANGGAGVYQVGFIAQAATVVAPGTTGATVSHVFAGAKEVNLLEQYQSSLHIPDFWKAVDFGWFAFLTRPIFYVLDWLNTLLGNFGLALMAFTLLVKALFFPLATRQFRSMAKMRQLQPKVQELRERYKSDQMALNQNMMALYKAEGVNPAAGCLPMVVQIPVFWSLYKDLYITIEMRHAPFFGWIHDLSAPDLTNLFNLFGLIPWDPNVLSPYLQLGVWPILFGATMFLQQKLNPAPTDPAQQRMFQMMPVLFTFFMARQPAGLVIYYCWNNLLTVAQQMVIQRRMKSAVDKVGAIPAAAGRK
>NC_011365.1|WP_081434755.1|397235_397487_-|membrane-protein-insertion-efficiency-factor-YidD
MAWLLIGAIRVYQWVLSPVLGPNCRFVPSCSNYAVEAVRRHGPFRGAILAAWRILRCNPWNIGGYDPVPSRERARRSCCSSHR

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Crispr_ID: NC_011365_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011365_2

460172-461968

TypeI-E

I-E

Consensus_repeat	Method
CGGTTCATCCCCGCACGTGCGGGGAACAC	CRISPRCasFinder
CGGTTCATCCCCGCACGTGCGGGGAACAC	CRT
CGGTTCATCCCCGCACGTGCGGGGAACAC	PILER-CR

29 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_011365_2

>merge|NC_011365|2|460172-461968|CRISPRCasFinder,CRT,PILER-CR
AGATTCATCCCTGCATATGCGAGGAACACAAGGCGGCCTCGTCCAGGATCACCAGACCCTGCGGTTCATCCCCGCACGTGCGGGAACACGTCCCCCTGCTCGGCAACCCCAAACTCAAGATCGGTTCATCCCCGCACGTGCGGGGAACACGCCGCGACGGTGAAGGGGAGGTTGTTCGACGCCGGTTCATCCCCGCACGTGCGGGGAACACCCTGATCCTGCGCCGACGCCGGAACCAGTCCGCGGTTCATCCCCGCACGTGCGGGGAACACGCCGCGACGGTGAAGGGGAGGTTGTTCGACGCCGGTTCATCCCCGCACGTGCGGGGAACACCCTGATCCTGCGCCGACGCCGGAACCAGTCCGCGGTTCATCCCCGCACGTGCGGGGAACACGAGTCACCGGATTCCCATCTCATCCTAATATCCGGTTCATCCCCGCACGTGCGGGGAACACCTTTTCTCAGCCGACACTCTCCATGCAAGAACCGGTTCATCCCCGCACGTGCGGGGAACACACGCGGGTCTATGAGATTCCGATCATGCAGGACGGTTCATCCCCGCACGTGCGGGGAACACATCTGTTGAAGCAGCAGGAGGGTTTTAGAAGCCGGTTCATCCCCGCACGTGCGGGGAACACCCTCAAAAAATATTCGCGTGGCGGCTGAACGACGGTTCATCCCCGCACGTGCGGGGAACACGCCGTCGCTCTCAAATCGCGGAATTGCAGCGCCGGTTCATCCCCGCACGTGCGGGGAACACATTCGATACGGTAATGTCGGCCATGTTTTATCCGGTTCATCCCCGCACGTGCGGGGAACACCGCTCGACCAGATCGCGCACACCCTCGGCAACCGGTTCATCCCCGCACGTGCGGGGAACACGTGCTGGAGGTGATGGCGGCCAATCGCCGCACCGGTTCATCCCCGCACGTGCGGGGAACACCATTGACCCGGCACCCTCCCCATGTGACGTTTCGGTTCATCCCCGCACGTGCGGGGAACACTGGCTCGGGACCATCTTAGCGGACGACATGGCCGGTTCATCCCCGCACGTGCGGGGAACACGGCGTAGCCCGCAGCACCGCCCAGCCGGGGACCGGTTCATCCCCGCACGTGCGGGGAACACCTTAACTGGATCACGATCGCGCTGATCCTCTACGGTTCATCCCCGCACGTGCGGGGAACACCCCGACGAAGTGATGGCCTGACTGTCTACGGCCGGTTCATCCCCGCACGTGCGGGGAACACCCGACCCCCATTGAATTGGGTGCGAACAACTACGGTTCATCCCCGCACGTGCGGGGAACACACGTTCTCGCGCGTGCTGTCCACGTTCCTGACCGGTTCATCCCCGCACGTGCGGGGAACACAGCGCGGCGTGGCGGGAATCAAGGTCGTCGGTCGGTTCATCCCCGCACGTGCGGGGAACACACCATCCGTTCGGCGGTGATGCCGCGAACGATCGGTTCATCCCCGCACGTGCGGGGAACACTTGCGTCAAACGAAGCACAATATCAGGCGCAGCGGTTCATCCCCGCACGTGCGGGGAACACCAGTTAAGGGGGTTTTTCGCAATCCCCCAATTCGGTTCATCCCCGCACGTGCGGGGAACACAACGTGGAATGGCACCAGATCGAAACGATGCTCGGTTCATCCCCGCACGTGCGGGGAACACGCGAAGACCTGCGCCTGGAGCGCCTGCTTGTGCGGTTCATCCCCGCACGTGCGGGGAACACCGTGGGGAATATCCTGACACACACATGGGCGTCGGTTCATCCCCGCACGTGCGGGGAACAC

>NC_011365|2|2|460172-461968|CRISPRCasFinder
AGATTCATCCCTGCATATGCGAGGAACAC	AAGGCGGCCTCGTCCAGGATCACCAGACCCTG
CGGTTCATCCCCGCACGTGCGGGAACACG	TCCCCCTGCTCGGCAACCCCAAACTCAAGAT
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGCGACGGTGAAGGGGAGGTTGTTCGACGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCTGATCCTGCGCCGACGCCGGAACCAGTCCG
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGCGACGGTGAAGGGGAGGTTGTTCGACGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCTGATCCTGCGCCGACGCCGGAACCAGTCCG
CGGTTCATCCCCGCACGTGCGGGGAACAC	GAGTCACCGGATTCCCATCTCATCCTAATATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTTTCTCAGCCGACACTCTCCATGCAAGAAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGCGGGTCTATGAGATTCCGATCATGCAGGA
CGGTTCATCCCCGCACGTGCGGGGAACAC	ATCTGTTGAAGCAGCAGGAGGGTTTTAGAAGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCTCAAAAAATATTCGCGTGGCGGCTGAACGA
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGTCGCTCTCAAATCGCGGAATTGCAGCGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	ATTCGATACGGTAATGTCGGCCATGTTTTATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CGCTCGACCAGATCGCGCACACCCTCGGCAAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GTGCTGGAGGTGATGGCGGCCAATCGCCGCAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CATTGACCCGGCACCCTCCCCATGTGACGTTT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TGGCTCGGGACCATCTTAGCGGACGACATGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GGCGTAGCCCGCAGCACCGCCCAGCCGGGGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTAACTGGATCACGATCGCGCTGATCCTCTA
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCCGACGAAGTGATGGCCTGACTGTCTACGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCGACCCCCATTGAATTGGGTGCGAACAACTA
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGTTCTCGCGCGTGCTGTCCACGTTCCTGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	AGCGCGGCGTGGCGGGAATCAAGGTCGTCGGT
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACCATCCGTTCGGCGGTGATGCCGCGAACGAT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTGCGTCAAACGAAGCACAATATCAGGCGCAG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CAGTTAAGGGGGTTTTTCGCAATCCCCCAATT
CGGTTCATCCCCGCACGTGCGGGGAACAC	AACGTGGAATGGCACCAGATCGAAACGATGCT
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCGAAGACCTGCGCCTGGAGCGCCTGCTTGTG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CGTGGGGAATATCCTGACACACACATGGGCGT
CGGTTCATCCCCGCACGTGCGGGGAACAC

>NC_011365|2|2|460172-461968|CRT
AGATTCATCCCTGCATATGCGAGGAACAC	AAGGCGGCCTCGTCCAGGATCACCAGACCCTG
CGGTTCATCCCCGCACGTGCGGGAACACG	TCCCCCTGCTCGGCAACCCCAAACTCAAGAT
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGCGACGGTGAAGGGGAGGTTGTTCGACGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCTGATCCTGCGCCGACGCCGGAACCAGTCCG
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGCGACGGTGAAGGGGAGGTTGTTCGACGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCTGATCCTGCGCCGACGCCGGAACCAGTCCG
CGGTTCATCCCCGCACGTGCGGGGAACAC	GAGTCACCGGATTCCCATCTCATCCTAATATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTTTCTCAGCCGACACTCTCCATGCAAGAAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGCGGGTCTATGAGATTCCGATCATGCAGGA
CGGTTCATCCCCGCACGTGCGGGGAACAC	ATCTGTTGAAGCAGCAGGAGGGTTTTAGAAGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCTCAAAAAATATTCGCGTGGCGGCTGAACGA
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGTCGCTCTCAAATCGCGGAATTGCAGCGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	ATTCGATACGGTAATGTCGGCCATGTTTTATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CGCTCGACCAGATCGCGCACACCCTCGGCAAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GTGCTGGAGGTGATGGCGGCCAATCGCCGCAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CATTGACCCGGCACCCTCCCCATGTGACGTTT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TGGCTCGGGACCATCTTAGCGGACGACATGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GGCGTAGCCCGCAGCACCGCCCAGCCGGGGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTAACTGGATCACGATCGCGCTGATCCTCTA
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCCGACGAAGTGATGGCCTGACTGTCTACGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCGACCCCCATTGAATTGGGTGCGAACAACTA
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGTTCTCGCGCGTGCTGTCCACGTTCCTGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	AGCGCGGCGTGGCGGGAATCAAGGTCGTCGGT
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACCATCCGTTCGGCGGTGATGCCGCGAACGAT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTGCGTCAAACGAAGCACAATATCAGGCGCAG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CAGTTAAGGGGGTTTTTCGCAATCCCCCAATT
CGGTTCATCCCCGCACGTGCGGGGAACAC	AACGTGGAATGGCACCAGATCGAAACGATGCT
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCGAAGACCTGCGCCTGGAGCGCCTGCTTGTG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CGTGGGGAATATCCTGACACACACATGGGCGT
CGGTTCATCCCCGCACGTGCGGGGAACAC

>NC_011365|2|2|460293-461968|PILER-CR
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGCGACGGTGAAGGGGAGGTTGTTCGACGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCTGATCCTGCGCCGACGCCGGAACCAGTCCG
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGCGACGGTGAAGGGGAGGTTGTTCGACGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCTGATCCTGCGCCGACGCCGGAACCAGTCCG
CGGTTCATCCCCGCACGTGCGGGGAACAC	GAGTCACCGGATTCCCATCTCATCCTAATATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTTTCTCAGCCGACACTCTCCATGCAAGAAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGCGGGTCTATGAGATTCCGATCATGCAGGA
CGGTTCATCCCCGCACGTGCGGGGAACAC	ATCTGTTGAAGCAGCAGGAGGGTTTTAGAAGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCTCAAAAAATATTCGCGTGGCGGCTGAACGA
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCCGTCGCTCTCAAATCGCGGAATTGCAGCGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	ATTCGATACGGTAATGTCGGCCATGTTTTATC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CGCTCGACCAGATCGCGCACACCCTCGGCAAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GTGCTGGAGGTGATGGCGGCCAATCGCCGCAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CATTGACCCGGCACCCTCCCCATGTGACGTTT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TGGCTCGGGACCATCTTAGCGGACGACATGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	GGCGTAGCCCGCAGCACCGCCCAGCCGGGGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CTTAACTGGATCACGATCGCGCTGATCCTCTA
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCCGACGAAGTGATGGCCTGACTGTCTACGGC
CGGTTCATCCCCGCACGTGCGGGGAACAC	CCGACCCCCATTGAATTGGGTGCGAACAACTA
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACGTTCTCGCGCGTGCTGTCCACGTTCCTGAC
CGGTTCATCCCCGCACGTGCGGGGAACAC	AGCGCGGCGTGGCGGGAATCAAGGTCGTCGGT
CGGTTCATCCCCGCACGTGCGGGGAACAC	ACCATCCGTTCGGCGGTGATGCCGCGAACGAT
CGGTTCATCCCCGCACGTGCGGGGAACAC	TTGCGTCAAACGAAGCACAATATCAGGCGCAG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CAGTTAAGGGGGTTTTTCGCAATCCCCCAATT
CGGTTCATCCCCGCACGTGCGGGGAACAC	AACGTGGAATGGCACCAGATCGAAACGATGCT
CGGTTCATCCCCGCACGTGCGGGGAACAC	GCGAAGACCTGCGCCTGGAGCGCCTGCTTGTG
CGGTTCATCCCCGCACGTGCGGGGAACAC	CGTGGGGAATATCCTGACACACACATGGGCGT
CGGTTCATCCCCGCACGTGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011365.1\|WP_012226056.1\|465864_466455_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NC_011365.1\|WP_012226060.1\|472607_473009_-\|hypothetical-protein	unknown	unknown	unknown
NC_011365.1\|WP_012226045.1\|454516_456100_+\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|226593
NC_011365.1\|WP_012553116.1\|471211_472543_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|183594
NC_011365.1\|WP_012553114.1\|466451_468092_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NC_011365.1\|WP_012553112.1\|462036_462384_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NC_011365.1\|WP_012226053.1\|463335_464022_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|215025
NC_011365.1\|WP_012553110.1\|457596_458958_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NC_011365.1\|WP_012226055.1\|464809_465868_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_011365.1\|WP_012226054.1\|464018_464801_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_011365.1\|WP_012226043.1\|453780_454398_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
NC_011365.1\|WP_043459148.1\|458942_459731_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NC_011365.1\|WP_081434691.1\|468473_471173_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_011365.1\|WP_012226037.1\|451132_451270_-\|hypothetical-protein	unknown	unknown	unknown
NC_011365.1\|WP_012226046.1\|456071_457472_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240536
NC_011365.1\|WP_012226040.1\|452082_452829_+\|NADPH-dependent-F420-reductase	unknown	unknown	gnl\|CDD\|224996
NC_011365.1\|WP_012226039.1\|451478_452075_+\|cupin	unknown	unknown	gnl\|CDD\|380348
NC_011365.1\|WP_012226041.1\|452895_453447_-\|HdeD-family-acid-resistance-protein	unknown	unknown	gnl\|CDD\|225786
NC_011365.1\|WP_012226036.1\|450404_451118_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239217
NC_011365.1\|WP_012553113.1\|462364_463324_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
NC_011365.1\|WP_012226056.1\|465864_466455_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.21488e-18
NC_011365.1\|WP_012226045.1\|454516_456100_+\|peptide-chain-release-factor-3	gnl\|CDD\|226593	COG4108, PrfC, Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis].	0
NC_011365.1\|WP_012553116.1\|471211_472543_-\|glutamate--tRNA-ligase	gnl\|CDD\|183594	PRK12558, PRK12558, glutamyl-tRNA synthetase; Provisional.	0
NC_011365.1\|WP_012553114.1\|466451_468092_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.98199e-117
NC_011365.1\|WP_012553112.1\|462036_462384_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.53575e-55
NC_011365.1\|WP_012226053.1\|463335_464022_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	5.83059e-46
NC_011365.1\|WP_012553110.1\|457596_458958_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NC_011365.1\|WP_012226055.1\|464809_465868_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	7.16397e-109
NC_011365.1\|WP_012226054.1\|464018_464801_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	4.10357e-30
NC_011365.1\|WP_012226043.1\|453780_454398_+\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	4.39048e-113
NC_011365.1\|WP_043459148.1\|458942_459731_+\|RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	1.51907e-73
NC_011365.1\|WP_081434691.1\|468473_471173_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.45524e-124
NC_011365.1\|WP_012226046.1\|456071_457472_-\|MATE-family-efflux-transporter	gnl\|CDD\|240536	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.	2.46847e-108
NC_011365.1\|WP_012226040.1\|452082_452829_+\|NADPH-dependent-F420-reductase	gnl\|CDD\|224996	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only].	1.96427e-46
NC_011365.1\|WP_012226039.1\|451478_452075_+\|cupin	gnl\|CDD\|380348	cd02219, cupin_YjlB-like, Bacillus subtilis YjlB and related proteins, cupin domain. This family includes bacterial and fungal proteins homologous to YjlB, a Bacillus subtilis protein of unknown function with a cupin beta barrel fold. The active site of members of the cupin superfamily is generally located at the center of a conserved barrel and usually includes a metal ion. The different functional classes in this superfamily include single domain bacterial isomerases and epimerases involved in the modification of cell wall carbohydrates, two-domain bicupins such as the desiccation-tolerant seed storage globulins, and multidomain nuclear transcription factors involved in legume root nodulation.	2.43595e-78
NC_011365.1\|WP_012226041.1\|452895_453447_-\|HdeD-family-acid-resistance-protein	gnl\|CDD\|225786	COG3247, HdeD, Uncharacterized conserved protein [Function unknown].	6.27243e-20
NC_011365.1\|WP_012226036.1\|450404_451118_+\|NUDIX-hydrolase	gnl\|CDD\|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	0.00920611
NC_011365.1\|WP_012553113.1\|462364_463324_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.3534e-135

>NC_011365.1|WP_043459148.1|458942_459731_+|RNA-methyltransferase
MEARMTGRDGGADIGPIGNSPVVILVRPQMAENIGTTARAMANGGLFHLRLVAPRDGWPLERAWRSASGADRILEAATVHDSVDDAIADLHHVFATCPRPRHIVKTVLTARGGAAELRQMSGRGLRTGLLFGPERAGLDNEDMARADALIRYPLNAAFMSLNLAQAVMIMAYEWWMAEDATPPRALMTNETHVATKGELDNFMRHLIDDLDECGFLRNEQKRAGMVRNLRHFFTRGEVTEQELRTLHGVVTELTRGRRARGQ
>NC_011365.1|WP_012553110.1|457596_458958_+|cysteine--tRNA-ligase
MPDSMPQLTLHDSRSRKTVPFAPLDPGNVRVYYCGPTVYDLAHIGNLRAMVTADILVRLLRHLYPRVTYVRNITDVDDKINTRARANGETIDSLTARTIRDFHEDLDAVGILPPDIEPRATHHIAEMLTLIGQLIDSGHAYEAQGHVLFAVSRFPAYGALSGRSPEDLLAGARVEVAPYKRDPGDFVLWKPSAPDLPGWESPWGRGRPGWHIECSAMSHRYLGESFDIHGGGSDLLFPHHENELAQSQCCFPHGRFANHWVHNAMLLVNGEKMSKSLGNFLTVRDALSVSPAEALRLLLLHAQYRSVLNFTLAGLEDAKQTLNRFYRAVGDTPPDGTVPVPAPVLAALCDDLNTPRALAEMHALADRALAGDRDAALGLRAAGQLLGLLGQTEDAWFRAGTYVHPETIERLIVERQDARKSRDFARADAIRESLAKDGIVLEDGPSGTTWRRA
>NC_011365.1|WP_012226046.1|456071_457472_-|MATE-family-efflux-transporter
MPDPACPDSSSPPGELRLLLRIAAPIALAQIAQMAMGVTDSVLLGGLGADALAIGGLSTMLFFTLLVMLQANLGAGGVLIAQARGSGDEGRIASIHAMLLVVALLLCVPFLALLTQAGPLLRLMHQPATLVGPVTSFLHILMWGVPPALIGTGVVEVVLPALDAQGVLLRVMPVVAVVNGVLNAGLIHGWFGLPAMGLRGSALATTLTMWGAALVLLAMVHSRPHLRLLLWPPRPRAADMAVLLRLGVPMMMATGAEIMLFQVTALQAATLGPHALAAHQIVLNLTATTYMAIMALGQAANVRVAYWTGAARPARARHAAWVAVGTAIAGMVASGCLIYLFRARLVAFYLDPSVPANAESTHIAMAALLLAAVFQVADGTQAVLVGALRGRGDAIVPMVLAVLGYWGIGFPLGTWLAFRCGLGVVGLWGGVACALVAVALMLGVRAARTLGDRGPAAVSVSRCRSA
>NC_011365.1|WP_012226045.1|454516_456100_+|peptide-chain-release-factor-3
MDAPVNAEPATAPTSGLAATIAREIARRRTFAIISHPDAGKTTLTERILRAGGAIQMAGNVRAKGERRRTRSDWMGIERDRGISVVTSVMTFEYGGCIFNLLDTPGHEDFSEDTYRTLTAVDAAVMVIDAAKGIEDRTRKLFEICRLRDIPIVTFINKMDREAQDPFTLLDEISSALALDTAPATWPVGRAAQFVGTYDLRARSLHVSTPLEQSDPRMVQLAEDLELAEAALPVFDRDSFNAGHLTPVFFGSAMKEIGVTDLLDALVAFGPPPRDQATESRTVRADETGLTALVFKIQANMDPNHRDRMAFARICSGRLERGMRLKHVRIGKQFALHTPQFFFARDRQLAEEAFAGDVVGIPNHGTLRIGDTLTEGEDLRFTGVPHFAPEILRRVRLDDAMKAKKLRQALTELAEEGVVQLFRPQDGAPPIVGVVGTLQLDVLQARLSGEYGVAIGFESTPYNLARWVTGDRAKLETFAMANRSAMADDLDGDPVFLAGSAFMMRRTAEMNLDLSFHDIKQIGIETR
>NC_011365.1|WP_012226043.1|453780_454398_+|30S-ribosomal-protein-S4
MSKRLESKYKINRRLGVNLWGRAKSPVNKREYGPGQHGQRRKQKPSDFSVQLMAKQKLKGYYGNISEKQFRKYYDEAVRRKGDTSENLIDLLERRLDAVVYRLKFAMTPFAARQFVSHGHITVNGRKVNIPSYIVRDEDVIEVREKSKHLAIVLDAAQSGERDVPEYMEVDHRQMKGRFLRAPKLSDVPYPVQMEPNLVIEFYSR
>NC_011365.1|WP_012226041.1|452895_453447_-|HdeD-family-acid-resistance-protein
MATPFTQRWGLFVLLGVVSIALGIVAWIDAISVTLASTMIIGLVLVIAGAVQMFHAFSVRDWGGFLLSLLGGVLYIVGGFILMQEPVTGSIVLTLVIAACLIISGTTRMLIAARHRELNGWWIILGGGLISLLVGACLYLTLPWSGLWLIGTFIAVELIAAGVGWIQFGLALRQANLLSGSGV
>NC_011365.1|WP_012226040.1|452082_452829_+|NADPH-dependent-F420-reductase
MTEPTSLPPHVLRRRALLAGLSALLLPRLSRAATSLPIGIIGSGHVGSTLGGLWLRAGHPVMFSARDLSSAQSVAAGLGALARAGTPEQAARFGEAVLLAVPYGALPALGASLHGVLAGKVVIDACNPYSWRDGDVARLARQQGAGPTTQSFFPGAHVIRAFNSEDMSTISVEAHRLPPLLGIPYAGDDAAAMDVVRGLIVDAGFDPVRAGPLSVARLFQPGGPEFEADLTAPELRGRLEQDQHGAGR
>NC_011365.1|WP_012226039.1|451478_452075_+|cupin
MTVSRRAFQTFLAGLGLSLAGQEVRAASHAGHDVESFMLARNGWVPNNDHLPVLYYRNAAALPADDPASGFERLFTANGWPPQWRWGVYDFHHFHSTAHEVLGVASGSARLMLGGPGGRIVDVRAGDVVVLPAGTGHRNLGSDDDFLVVGAYPPDQHYDLRRSGLSPDELARMAHVPFPASDPVSGAGGSLPALWHQT
>NC_011365.1|WP_012226037.1|451132_451270_-|hypothetical-protein
MPDIEDHSAPAPLRDVVQLMGAVTFVLAMLAVGWHAAHVSGVWPG
>NC_011365.1|WP_012226036.1|450404_451118_+|NUDIX-hydrolase
MRWPSRWPSIALDSGLTVRVAGHMPDLPAPVAAEVEAIWRERQAANPALFNGRVFTADRITTRGIVGHWTTYHRVLAQMTRPTLYPALRLKPLAVTGILHTPDGIVLGRRAPHSTYLAGWWQTPPAGSVESRHGENKVDLTAQILAEAQEELGLAPDMLTVAGPVRATRHPATRIVDIGIRLDTALPFDRVLQGWHAGGNDEYDRLAIVKPNQNPEDVVGPHILPGTREYLDVDRRS
>NC_011365.1|WP_012553112.1|462036_462384_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVIVVENAPPRLRGRLAVWLLEVRAGVYVGTYGQRVREMIWGQVCAYIEDGNAVMAWAAPNDAGFEFDTCGRNRRVAVDFDGLRLVSFGPEAALPAQPGPAATTPPRRRGRGVL
>NC_011365.1|WP_012553113.1|462364_463324_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSRPMPGLPPPRPIPLKERSSLLFVEKGQIDVLDGAFVLVGHNGIRTHIPIGGLACLMLEPGTRVSHAAAALAARAGTLLIWVGEAGVRLYASGQPGGARADRLLLQARLALDDAARLKVVRKMYALRFGEDAPERRSVDQLRGIEGSRVRETYRLLARTHGAEWDGRRYDPHEWDTANLVNRCLSAATAALYGITEAAILAAGYAPAIGFLHTGKPQSFVYDIADIVKFETVVPEAFRVAAAVQHERPLDGQRISDPVAAVRHRCRDQFRRTNILGRLIPLIEEILSAGGAEMPPAQDEAMPVAFKDAKGLGDAGHRG
>NC_011365.1|WP_012226053.1|463335_464022_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MMRGFLSRIALRRDAPVRALARLLVPDGEGRQHAAAHHLLWALFGDDPDRTRDFLWRQMEAGRFMVLSAREPVDSHGLFDVETRPFDPLLKEGDRLRFLLRANATVDRKTPGRTRSQRHDVVMDALHRRSQREGAEARDSMIADALETWMGRQGVRAGFAPASPLVIEGRDVLRIPRSGGRGIVSFGVVNLTGEVRVTAPDAFLDSLMQGFGRARAFGCGLMLIRRAV
>NC_011365.1|WP_012226054.1|464018_464801_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MGQFLTFAMVAPMASFGAIAVGERRDGWDRPARSAVLGLMAACLGLTRDDEDAQAALAADYGLAILCHAPGKLLTDYHTAQAAPARRNWRPATRAEELAASPGDLATILSRRDYRMGTWHLGAVWTSGKTARWSLEALQAAMREPVFTPSLGRRSCPAGLPLAPSVTDGVSAAAVLLDRHRNGPEAGLRIRHDSFRRQFAGASRSGGLLLVLDAVDMAEHGGGHTPLRREIRRDQPLSRRRWQFGLREEAVLLCREEGTI
>NC_011365.1|WP_012226055.1|464809_465868_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRFLQLHLLTFYPPSNVNRDDTGNPKTANVGGVTRLRISSQALKRAWRTSEIFSSALAGHMGQRTQRLGNEIRQHLLEKGLDEKRSLAIARDIAGIYGKVKAEKDANSTYTEQLVFISPAEREAAFAMADRLAAGEKIDLAKEKDALLYRTDTAADIALFGRMLASEPSYNREAAVQVAHAITTHRVTVEDDYYTAIDDLKRPEEDAGAGFLSEAGFGSGVFYLYLCVNRELLRKNLGDADESGVMETALGALVEAAATVAPSGKQNSFAALARAQYVLAERGNAQPRTLAGAFARPVAGTDLMAGSIAALRTFRGELARVYGAGIDAECELETARKDSATLADIAAFCRS
>NC_011365.1|WP_012226056.1|465864_466455_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTGDDRNAIAEKARNWWRELQPDPGGRPGDRGTLARLRRCASIVDALFEPAVQTLARRCGARREGELARVALVAAVLAHVRSDNPAQFVARQIGPTDMAKVATALCKPVRFRRLLDASEFDECLTAFRRLVTLAGRTVNVADLARSVLAWPRTGMWDDMAAEKIRVRWVYEYWNAGEPDSGASAEQSIESEKELQS
>NC_011365.1|WP_012553114.1|466451_468092_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLTASWLPIRRKSGAAETIRPAQIVDRVADDPIMALDWPRADFRIASLEFLIGLLATAFPPKNEDIWCETWEDPPSVEALDEAFAPVAEAFWLDGPGPRFLQDLENLQSGQEPVERLLIDAPGDSTVKKNTDLFVHRQRIMALGRPAACMALFTLQSWAPSGGAGNMTGLRGGGPLVTLVLPREGASLWEMVWANTPFGVPPSEADLPRVFPWLAPTIGSGKDGTSVRPGHNAHPLQCWWGMPRRIRLDFEAAEDGICDLTGQPDAVLVPGWRQRPYGASYADWTGMPYGAGASIHPLTPRYRQKKDAEWLSVHPQPGGIGYRHWAGIVVNSSDTHRLPASTVLSWRNDRARNVAASLTPRLLAAGYDMDNMKARSFVESEMPLPGVVDPVRQEALDALARAYVEAADQVAGILRQCVREALFGKGTISPDATLFSGLRERFWAQTEGTFFDLLHQAVLLGDGDDIDLRRIWLRALRRVALDLFDSAVMLTPDTGTTEAQRSALARRRLGAAVAGGGKEGQALMMVLKIPVPVTRKATSRMKQP
>NC_011365.1|WP_081434691.1|468473_471173_-|CRISPR-associated-helicase/endonuclease-Cas3
MAMRSNGLEFFWGKARAVPAEGAMIGPVMHPLIAHMLDVAAVAVLLPENAKCGLDRRQLGLLVALHDIGKLMPAFQAKVEICWPEAILGGFPVELVPCFHDAAGLALLDLMVDDVLAALFANGQDGKCWRLTHKLKLLRAVAGHHGQPVSAQDRNTLAPDTIERARTLVALLFDVFRPPPILRPGDDTLRRLEWMLARVTIQADWIGSQQEWFPYVTPESVADPSGYFWNHALPRAQSAIHRAGLGPMVGAPFAGTAGLFDHIREPSPMQALLETLPVPSGPVLVVIEDATGSGKTEAALVMAQRLIAAGRSSGLFVALPTMATANAMYDRLAAAYRRLFQPSARPSLALAHGRARLDERFAAALAPDDGSDAFPDARIMDETAEAYCAAWLGSESRRALMAQVGVGTIDQALMAVLPVRFATVRHAGLAGKILIVDECHAFDPYMRREMVALLRFHAAMGGSALLLSATLTQRIRQELTNAFRSGLDTVDPAPLSGTAYPLVTLVGKAGAEEYPCALRPGLARSIAVRRLADTDAASREVIAAAAAGAAVAWIRNTVDEVIATARFLRAQGVELLVFHARFAMVDRLAIERDVLARFGKNKETTGRSAVLVASQVIEQSLDLDFDVLVTDLAPMDQVIQRAGRLRRHDRIARPVDREELLVISPEPVAEPDPSWVRRVLPGTAAVYRDPALLWRTARTLFRYGRIESPGRIRALIEEAGDADAPGAVPDGLAAGSTDAMGKALAAGFAADRNVLSFDAGYVADGALWEREARTPTRLEDLPYVTVRLAVMQDGRVLPWAAKIDPGLACAGEHRRAWALSEVSVAQYRLARCPPPPGLERVVAAARAEWPRWEREDESSVLLLILQKMEEGWRGAGQIETGHEVVIGYDRTYGLEVVPA
>NC_011365.1|WP_012553116.1|471211_472543_-|glutamate--tRNA-ligase
MKLRFAPSPTGLIHVGNARQAIANALYARRHGGTFQLRIDDTDRERSRDEYVDALHTDLAWLGITWDETFRQSDRLDRYAAAIETLKASGRLYPCFESEQELASKREARIRMRKPPIYDRAMLRMTAEQRAQAEANGKVPYWRFRLSDRTVAWDDMVMGRSQVKLQSISDPVLVRADGTVLYTLASVVDDMETGVTHVLRGEDHLTNTGVQIDIAEALGGKVGQFAFAHLPLLLDEAGGKLSKRFDGLSIRALRQDGIDPVAIVSYLARLGSADDPAPLSFDDLAASYDVRRVSRSAARFDMRQLLALNRRVMHQMPFGAIRDRLPEGATEAFWMAVRGNVDMVSELRHWWDVVGGVIVPPVQDDEGAYLLQALALLPPEPWDAQTWKDWTTAVRDATGRSGKSVFHPLRVALTGEEKGPEMRDLLPLMGHDRVAERLRIAAR
>NC_011365.1|WP_012226060.1|472607_473009_-|hypothetical-protein
MTDTPPPFEPTEPTASETGWRVRILDLSGGAEEGIVEDIGGFLDLAHANAFARAYVRDSIERCRVAGAAPREVLQAWMSFGEDAEILDAGDDGWRSANELDDFTAHAATPMERDWRTIDPRRMVEDDEDETPE

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Crispr_ID: NC_011365_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011365_3

1814792-1817999

TypeI

I-C

Consensus_repeat	Method
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	PILER-CR
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CRT

48 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_011365_3

>merge|NC_011365|3|1814792-1817999|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAACAAGCGCGACTCGCCAATCGGTGAAGCGCGCTGCGGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGGATGGCATCGGGGTGAAATGCGCGAACAGGTCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACGTCAGCATGCTCATAAAATCCGCCAGATTGGGCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTCGCATCTGCTGACCTGATCAAGCGCAACAAGGTGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGGTCAGGACGATGGGCAGATCCGCAGACTGTCCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGATATGGCATCGGAATGGGGCGTCAGCATTCTGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACGCCAGCCGCCCGTCCGGACTGGGAGCGGCTGGATGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTACGAGACCGTGACGGCGGCGGTGGCTGACTTTGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACATCCCGGGCGAGCCGCTGCCCGTCATGGACAAGAGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCCCGGCCAGCGCAAAATATCCCGCGCCGTCCACGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGATCCTCCCGTGGCACCGGGGGTTCCCCCAAGGAGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACGCCCCCCAAAGGTTGGGTTGATCGTTCGGGAAAGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCCGATTCCGGTCCCGAGTTGAATGCGCGCGAACTCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTGTTGCAGCAGGCCCCACGCAAGGGATGGCCGATGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTCCCGGGCGAGCCGCTGCCCATCATGGACAAGAAGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACACGGAATTTTACGCTCCGACATCATCTAACCCGCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACAGGAGGGTGATATCGAACGAATATCCGATCGGAAGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACATCAACACGCCGGCGCCGATCGAGATCATCTCCCCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCAGCGGTTCCGTTCGGAATTCGAGGAATTCCAGCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTTTACCGAAACCGTTATCTCGGCCGGAGCGCCGAACGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACATGCGCGAGGCTGCCGCTTTCATCCGCGCTAACGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTGCGCACGCTGGCCATCGGCGCGTCCTGGTATAAGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTGGGTGACGTAGATATACGACCCGTCGCTAACCTGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACGTGTAGATCATCCCTGGCGTAAGAACGGTGAAGCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACAGGGGCGGCACAGCGCCACCCCTAACGCCTCTGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACGTATGGGGCGGGCGCCCACGAACCGGACGACGGAAGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCCTGATGGTTGATGGGGCCGACCGTTGTCATGTTGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTGGAGCGCCGCCATTTCGCCATGTCGGTCCATGGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACGGGATGTTGTCGAGGGTGAGGAATCGCGGGCATGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTTTGGAGCGGTCAGGTTGGCCGACACCAACCAAAGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACGCGATCACGTTGCGGATCGACCGTTCGGAACGACGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCTCGGGATGTTGATTGCCCGGTCAACATTTGCAGGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCATGGGGATCAGGCCGAGTAAAACAGAACGTCAAGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACGCCGCAAGCGCGAAAACATGGACCAGATCAAGGCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCCGAGGTCCAGCAGCGCCTGCTCGGCGTCGTCCAGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGGTAACTCTCGGGATAGCGGTCCTGAATGGTGGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGCCTTTGGATGCGAACTCGTCGGCGATCAGGCGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGTCAGGAAGTCGGTGCGCCCGCTCTCGATCGGGGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACACGGCCAAGCGGATCGGTTGGAGACGTGGCGCGCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGGTTCGTCCAGCAGCGCACCATGCAGAGCGGGATGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACATCTCATCCGCGACCCGCTCCAGCCCTTCCGCCAGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACAGGCGCAGGTCAGCCCGGTAGCCGGTGATGAGGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTCGGGCGACGGCGCGCGGGCCGGGTTCTCGGGCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGCACTGGTCGAGGCTTACGGCAAGCTCTCCAAGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACAGGAACAATCACTGCCCGCAATCCAGACAATTCCGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACGTCGATACCCAGCCACTGCGGCATCTCGAAATTGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCAGAGCGCGGGCATTCTTCGCGAGAGGGGTCTGGTGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACGGTCGGCTGTCCGGAAACGATCTGTCCAATCCCTGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACT

>NC_011365|3|3|1814792-1817998|PILER-CR
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AAGCGCGACTCGCCAATCGGTGAAGCGCGCTGCGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGATGGCATCGGGGTGAAATGCGCGAACAGGTC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTCAGCATGCTCATAAAATCCGCCAGATTGGGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCGCATCTGCTGACCTGATCAAGCGCAACAAGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGTCAGGACGATGGGCAGATCCGCAGACTGTCC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGATATGGCATCGGAATGGGGCGTCAGCATTCTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCCAGCCGCCCGTCCGGACTGGGAGCGGCTGGAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TACGAGACCGTGACGGCGGCGGTGGCTGACTTTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCCCGGGCGAGCCGCTGCCCGTCATGGACAAGA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCCGGCCAGCGCAAAATATCCCGCGCCGTCCACG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGATCCTCCCGTGGCACCGGGGGTTCCCCCAAGGA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCCCCCCAAAGGTTGGGTTGATCGTTCGGGAAAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCGATTCCGGTCCCGAGTTGAATGCGCGCGAACTC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGTTGCAGCAGGCCCCACGCAAGGGATGGCCGAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCCCGGGCGAGCCGCTGCCCATCATGGACAAGAAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ACGGAATTTTACGCTCCGACATCATCTAACCCGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGAGGGTGATATCGAACGAATATCCGATCGGAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCAACACGCCGGCGCCGATCGAGATCATCTCCCC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CAGCGGTTCCGTTCGGAATTCGAGGAATTCCAGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TTTACCGAAACCGTTATCTCGGCCGGAGCGCCGAAC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATGCGCGAGGCTGCCGCTTTCATCCGCGCTAAC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGCGCACGCTGGCCATCGGCGCGTCCTGGTATAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGGGTGACGTAGATATACGACCCGTCGCTAACCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTGTAGATCATCCCTGGCGTAAGAACGGTGAAGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGGGCGGCACAGCGCCACCCCTAACGCCTCTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTATGGGGCGGGCGCCCACGAACCGGACGACGGAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCTGATGGTTGATGGGGCCGACCGTTGTCATGTT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGGAGCGCCGCCATTTCGCCATGTCGGTCCATGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GGGATGTTGTCGAGGGTGAGGAATCGCGGGCAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TTTGGAGCGGTCAGGTTGGCCGACACCAACCAAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCGATCACGTTGCGGATCGACCGTTCGGAACGAC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CTCGGGATGTTGATTGCCCGGTCAACATTTGCAGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CATGGGGATCAGGCCGAGTAAAACAGAACGTCAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCCGCAAGCGCGAAAACATGGACCAGATCAAGGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCGAGGTCCAGCAGCGCCTGCTCGGCGTCGTCCA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGTAACTCTCGGGATAGCGGTCCTGAATGGTGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGCCTTTGGATGCGAACTCGTCGGCGATCAGGCG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTCAGGAAGTCGGTGCGCCCGCTCTCGATCGGGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ACGGCCAAGCGGATCGGTTGGAGACGTGGCGCGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGTTCGTCCAGCAGCGCACCATGCAGAGCGGGAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCTCATCCGCGACCCGCTCCAGCCCTTCCGCCAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGCGCAGGTCAGCCCGGTAGCCGGTGATGAGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCGGGCGACGGCGCGCGGGCCGGGTTCTCGGGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGCACTGGTCGAGGCTTACGGCAAGCTCTCCAAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGAACAATCACTGCCCGCAATCCAGACAATTCCG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTCGATACCCAGCCACTGCGGCATCTCGAAATT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CAGAGCGCGGGCATTCTTCGCGAGAGGGGTCTGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GGTCGGCTGTCCGGAAACGATCTGTCCAATCCCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC

>NC_011365|3|3|1814792-1817999|CRISPRCasFinder
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AAGCGCGACTCGCCAATCGGTGAAGCGCGCTGCGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGATGGCATCGGGGTGAAATGCGCGAACAGGTC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTCAGCATGCTCATAAAATCCGCCAGATTGGGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCGCATCTGCTGACCTGATCAAGCGCAACAAGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGTCAGGACGATGGGCAGATCCGCAGACTGTCC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGATATGGCATCGGAATGGGGCGTCAGCATTCTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCCAGCCGCCCGTCCGGACTGGGAGCGGCTGGAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TACGAGACCGTGACGGCGGCGGTGGCTGACTTTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCCCGGGCGAGCCGCTGCCCGTCATGGACAAGA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCCGGCCAGCGCAAAATATCCCGCGCCGTCCACG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGATCCTCCCGTGGCACCGGGGGTTCCCCCAAGGA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCCCCCCAAAGGTTGGGTTGATCGTTCGGGAAAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCGATTCCGGTCCCGAGTTGAATGCGCGCGAACTC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGTTGCAGCAGGCCCCACGCAAGGGATGGCCGAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCCCGGGCGAGCCGCTGCCCATCATGGACAAGAAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ACGGAATTTTACGCTCCGACATCATCTAACCCGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGAGGGTGATATCGAACGAATATCCGATCGGAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCAACACGCCGGCGCCGATCGAGATCATCTCCCC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CAGCGGTTCCGTTCGGAATTCGAGGAATTCCAGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TTTACCGAAACCGTTATCTCGGCCGGAGCGCCGAAC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATGCGCGAGGCTGCCGCTTTCATCCGCGCTAAC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGCGCACGCTGGCCATCGGCGCGTCCTGGTATAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGGGTGACGTAGATATACGACCCGTCGCTAACCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTGTAGATCATCCCTGGCGTAAGAACGGTGAAGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGGGCGGCACAGCGCCACCCCTAACGCCTCTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTATGGGGCGGGCGCCCACGAACCGGACGACGGAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCTGATGGTTGATGGGGCCGACCGTTGTCATGTT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGGAGCGCCGCCATTTCGCCATGTCGGTCCATGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GGGATGTTGTCGAGGGTGAGGAATCGCGGGCAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TTTGGAGCGGTCAGGTTGGCCGACACCAACCAAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCGATCACGTTGCGGATCGACCGTTCGGAACGAC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CTCGGGATGTTGATTGCCCGGTCAACATTTGCAGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CATGGGGATCAGGCCGAGTAAAACAGAACGTCAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCCGCAAGCGCGAAAACATGGACCAGATCAAGGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCGAGGTCCAGCAGCGCCTGCTCGGCGTCGTCCA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGTAACTCTCGGGATAGCGGTCCTGAATGGTGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGCCTTTGGATGCGAACTCGTCGGCGATCAGGCG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTCAGGAAGTCGGTGCGCCCGCTCTCGATCGGGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ACGGCCAAGCGGATCGGTTGGAGACGTGGCGCGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGTTCGTCCAGCAGCGCACCATGCAGAGCGGGAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCTCATCCGCGACCCGCTCCAGCCCTTCCGCCAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGCGCAGGTCAGCCCGGTAGCCGGTGATGAGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCGGGCGACGGCGCGCGGGCCGGGTTCTCGGGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGCACTGGTCGAGGCTTACGGCAAGCTCTCCAAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGAACAATCACTGCCCGCAATCCAGACAATTCCG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTCGATACCCAGCCACTGCGGCATCTCGAAATT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CAGAGCGCGGGCATTCTTCGCGAGAGGGGTCTGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GGTCGGCTGTCCGGAAACGATCTGTCCAATCCCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAACT

>NC_011365|3|3|1814792-1817998|CRT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AAGCGCGACTCGCCAATCGGTGAAGCGCGCTGCGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGATGGCATCGGGGTGAAATGCGCGAACAGGTC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTCAGCATGCTCATAAAATCCGCCAGATTGGGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCGCATCTGCTGACCTGATCAAGCGCAACAAGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGTCAGGACGATGGGCAGATCCGCAGACTGTCC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGATATGGCATCGGAATGGGGCGTCAGCATTCTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCCAGCCGCCCGTCCGGACTGGGAGCGGCTGGAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TACGAGACCGTGACGGCGGCGGTGGCTGACTTTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCCCGGGCGAGCCGCTGCCCGTCATGGACAAGA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCCGGCCAGCGCAAAATATCCCGCGCCGTCCACG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGATCCTCCCGTGGCACCGGGGGTTCCCCCAAGGA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCCCCCCAAAGGTTGGGTTGATCGTTCGGGAAAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCGATTCCGGTCCCGAGTTGAATGCGCGCGAACTC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGTTGCAGCAGGCCCCACGCAAGGGATGGCCGAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCCCGGGCGAGCCGCTGCCCATCATGGACAAGAAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ACGGAATTTTACGCTCCGACATCATCTAACCCGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGAGGGTGATATCGAACGAATATCCGATCGGAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCAACACGCCGGCGCCGATCGAGATCATCTCCCC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CAGCGGTTCCGTTCGGAATTCGAGGAATTCCAGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TTTACCGAAACCGTTATCTCGGCCGGAGCGCCGAAC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATGCGCGAGGCTGCCGCTTTCATCCGCGCTAAC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGCGCACGCTGGCCATCGGCGCGTCCTGGTATAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGGGTGACGTAGATATACGACCCGTCGCTAACCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTGTAGATCATCCCTGGCGTAAGAACGGTGAAGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGGGCGGCACAGCGCCACCCCTAACGCCTCTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTATGGGGCGGGCGCCCACGAACCGGACGACGGAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCTGATGGTTGATGGGGCCGACCGTTGTCATGTT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGGAGCGCCGCCATTTCGCCATGTCGGTCCATGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GGGATGTTGTCGAGGGTGAGGAATCGCGGGCAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TTTGGAGCGGTCAGGTTGGCCGACACCAACCAAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCGATCACGTTGCGGATCGACCGTTCGGAACGAC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CTCGGGATGTTGATTGCCCGGTCAACATTTGCAGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CATGGGGATCAGGCCGAGTAAAACAGAACGTCAA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GCCGCAAGCGCGAAAACATGGACCAGATCAAGGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CCGAGGTCCAGCAGCGCCTGCTCGGCGTCGTCCA
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGTAACTCTCGGGATAGCGGTCCTGAATGGTGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGCCTTTGGATGCGAACTCGTCGGCGATCAGGCG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTCAGGAAGTCGGTGCGCCCGCTCTCGATCGGGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ACGGCCAAGCGGATCGGTTGGAGACGTGGCGCGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGGTTCGTCCAGCAGCGCACCATGCAGAGCGGGAT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCTCATCCGCGACCCGCTCCAGCCCTTCCGCCAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGCGCAGGTCAGCCCGGTAGCCGGTGATGAGG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCGGGCGACGGCGCGCGGGCCGGGTTCTCGGGC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGCACTGGTCGAGGCTTACGGCAAGCTCTCCAAG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGGAACAATCACTGCCCGCAATCCAGACAATTCCG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GTCGATACCCAGCCACTGCGGCATCTCGAAATT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CAGAGCGCGGGCATTCTTCGCGAGAGGGGTCTGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GGTCGGCTGTCCGGAAACGATCTGTCCAATCCCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011365.1\|WP_012222298.1\|1825294_1826695_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NC_011365.1\|WP_012222299.1\|1822988_1825112_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NC_011365.1\|WP_012553885.1\|1805379_1805760_+\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
NC_011365.1\|WP_012222307.1\|1812618_1813275_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_011365.1\|WP_012553895.1\|1829577_1830765_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NC_011365.1\|WP_012553893.1\|1827653_1828946_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NC_011365.1\|WP_012553894.1\|1828942_1829581_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NC_011365.1\|WP_012553888.1\|1811671_1812610_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_011365.1\|WP_012222311.1\|1808709_1808934_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NC_011365.1\|WP_012222297.1\|1826691_1827657_+\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NC_011365.1\|WP_012553886.1\|1809187_1809859_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_011365.1\|WP_012222292.1\|1833563_1835909_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NC_011365.1\|WP_012222312.1\|1808299_1808710_-\|tRNA(fMet)-specific-endonuclease-VapC	unknown	unknown	gnl\|CDD\|350312
NC_011365.1\|WP_012222313.1\|1805790_1808139_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_011365.1\|WP_043459250.1\|1820209_1822075_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_011365.1\|WP_012553889.1\|1813274_1814315_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_011365.1\|WP_012553896.1\|1830786_1833561_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NC_011365.1\|WP_012222305.1\|1814318_1814609_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_011365.1\|WP_012553887.1\|1809855_1811679_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_011365.1\|WP_012553891.1\|1822298_1822985_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255

Protein	Function_ID	Function_description	E-value
NC_011365.1\|WP_012222298.1\|1825294_1826695_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_011365.1\|WP_012222299.1\|1822988_1825112_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	8.70268e-52
NC_011365.1\|WP_012553885.1\|1805379_1805760_+\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	1.46096e-44
NC_011365.1\|WP_012222307.1\|1812618_1813275_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.71876e-39
NC_011365.1\|WP_012553895.1\|1829577_1830765_+\|DNA-protecting-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	3.02986e-106
NC_011365.1\|WP_012553893.1\|1827653_1828946_+\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	2.3564e-158
NC_011365.1\|WP_012553894.1\|1828942_1829581_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	4.11803e-64
NC_011365.1\|WP_012553888.1\|1811671_1812610_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.75473e-146
NC_011365.1\|WP_012222311.1\|1808709_1808934_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	3.55301e-15
NC_011365.1\|WP_012222297.1\|1826691_1827657_+\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	0
NC_011365.1\|WP_012553886.1\|1809187_1809859_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.91057e-110
NC_011365.1\|WP_012222292.1\|1833563_1835909_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NC_011365.1\|WP_012222312.1\|1808299_1808710_-\|tRNA(fMet)-specific-endonuclease-VapC	gnl\|CDD\|350312	cd18745, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.52982e-53
NC_011365.1\|WP_012222313.1\|1805790_1808139_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.87121e-56
NC_011365.1\|WP_043459250.1\|1820209_1822075_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.84262e-147
NC_011365.1\|WP_012553889.1\|1813274_1814315_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_011365.1\|WP_012553896.1\|1830786_1833561_+\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NC_011365.1\|WP_012222305.1\|1814318_1814609_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.50958e-31
NC_011365.1\|WP_012553887.1\|1809855_1811679_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_011365.1\|WP_012553891.1\|1822298_1822985_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	5.87187e-96

>NC_011365.1|WP_012222305.1|1814318_1814609_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTEDAAGRRRLRRVARACLDFGQRVQYSVFECEVDPARWTALRARLIAETDTTKDSLRFYQLGAKGKQRVEHIGAKPVLDLDGPLLF
>NC_011365.1|WP_012553889.1|1813274_1814315_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRHLNTIYVTTEDAWLRKDGANVVVEVEGQERGRAPMHLLDGIMCFGRIGASPALMGACAESGLALSWLSPQGRFLARVEGPRSGNVLLRRTQYRTADSTERALPIVRNMVAAKAANQRTVIRRALRDHGPGLNAQERTRLDEAERRLTIIVRHITQAPDVATARGMEGEAAQVYFGIFNLLIRVEGDAFTFGGRSRRPPLDRVNALLSFLYAVLGHDCRSALESVGLDPQVGFLHADRPGRNSLALDMMEELRPVLADRLAVSLINRRQVAAGDFTVSDGGAVLLNDDARKTVLVAWQDRKKKELRHPFLNESLTFGLVAHVQALLLSRHLRGELDGYPAFVWK
>NC_011365.1|WP_012222307.1|1812618_1813275_+|CRISPR-associated-protein-Cas4
MHAPPDNATEDALVPISALQHHLFCPRQCALIHVERIWAENGATAEGRILHERVDDGRPDRRTGVRTVRALTIRSLTLGVFGKADAVEFHGVETAAVPYPVEYKRGRPKAHRADEVQLCAQAICLEDMFGHSVPEGALFYGQPRRRTVVVFDGALRTLTEQTARKVRAMIADCLTPPPVYKASCNQCSLQHACQPRRLEKPPSIGRWFATQLLEEDNA
>NC_011365.1|WP_012553888.1|1811671_1812610_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTEATAMQNRHEFVLFFDVTNGNPNGDPDAGNMPRLDPETNQGLVSDVALKRKVRNYVSLARPDMPGFEIYMSEGMALNRQHRKAWNAIMPEVTKDESFKTLPKDEDKARALTRWMCTNFWDIRTFGAVMTTSVNSGQVRGPVQFSFARSVEPVLPLEIAITRMAATTEADAESKGGRTMGRKHIVPYGLYRMHGYISAPLASHPVKGTGFSESDLELLLEALTGMFDHDRSAARGEMATRKLIVFRHESALGNARAQDLFDRVTVQRAYQGSAHPIGSAAIDNWPPARAWGDYQVLIDRDAVPAGIEIIER
>NC_011365.1|WP_012553887.1|1809855_1811679_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTIQKRPGPLEALVDFYARMDDAEDPGWGREKFGWCVVIDAEGQPIDVLDQHDHDGRKPRPRLFLVPAAVKRASGIAPNFLWDKTSYVLGRTAGAGKRTVQEHEAFVAFNLKRMAETSDVGLVAFRRFLERWTPAQFDTPLFPAEMLDANIMFRLEGDRDYLHRRPAAQRLVEAPLDNGHERQSFCLVTGQRAAPARLHPTIKGVEGAQTSGASLVSFNLDAFCSYGRKQGDNAPTSQAAAFRYGAALNRLLTRDGPNRLRRPIGDATVIFWADGSDAQVAKKADAWIQEAIAPNLLDADAARRIGEELTALAQGRPLSQLRPDIPPDTRFYVMGLSPNAARLSVRFWLSDSLDVFAHRLAEHYEDTRIAPSPWSRPPTVNLLLARTVAAQDKYDNIPPLLAGEIMRAILTGTPYPRTWLAAILMRLRAGDDPATGWHAAALRAVLQRRRRLTKNASDNGDVPVSLNRDYPSIGYQLGRLFAVYELAQRAALGIGVKATMRDKYFAAASAAPASIFPVIIRNSQNHLSNVRKRTPGWAGVIERELDEIFGRITPSGPHVLPRALSLEHQGEFAIGYYHQRRERIGGRMAETALQDDEQDIEDNATHD
>NC_011365.1|WP_012553886.1|1809187_1809859_+|type-I-C-CRISPR-associated-protein-Cas5
MGIRLHVWGERACFTRPELKSERVSYDVLTPSAARGIVEAIHWKPAIRWHIDRIHVLKPIRFQSIRRNEVGAKVSAVLAARAMTAGHTSGLGLAVDENRQQRAATILVDVAYVIEAHFTLTARAGAGDTAAKHLSMFNRRATQGQCFHRPCLGTREFPADFALITEEAPLPASAFPPDLQAVDLGWMLHDIDFADQRTPRFFRACIESGVIAVPAADSPDLIA
>NC_011365.1|WP_012222311.1|1808709_1808934_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MLTRTTLFLSNRSQAVRLPKAVAFGEGVREVVIVPEGPRRIIAPAEAAWDDFFAAPGLDLGERSQPAMQERERF
>NC_011365.1|WP_012222312.1|1808299_1808710_-|tRNA(fMet)-specific-endonuclease-VapC
MLRFLLDTNLCIRVLRDRPQGLRARFNAYAEDLCISDVVLYELLYGAERSSDPVRVRREVEHFADRLNVLPFDSAAASHTAEIRDDLERRGCVIGPYDLMIAGHARSRGLVVVTGNLGEFRRVAGLRAEDWFTNVA
>NC_011365.1|WP_012222313.1|1805790_1808139_+|CRISPR-associated-endonuclease-Cas3''
MDIFAHSLPDDPSTERWETLRAHSLRVAALAEQFAAVFGAAHKGRALGLLHDIGKCSAAYQDYIRKPGPCHGPDHSTAGARAVVASYGPLGRLLAFAIAGHHSGLMDGSGHDGPGRSLNERLDEQAYAVPASDNWPDYCPARPTLQDLVDESPPVASTDYPGFATSFFVRMLFSCLTDADFIATEGYYAESAGLPPPARGGTITQAHLDAIRRFMKTRRRDDTPLNRLRSRILDHAIGKAALGPGLFTMTVPTGGGKTLASLSFALDHAVRHGLRRVIYVIPFTSIIEQTATVFREALGTTDGILEHHSNFDWDRRAPAGENDEEAEGADGLAKLRRDAENWDAPIIVTTSVQFFESLFAARGSQARKLHNIAGSVIILDEVQTLPLHLLRPCLAVLDELARNYGVSIVLCTATQSALRQIDDALPPGRKGRRAGLDIQDTHELAPEPAALYDALRRATVTWRKEPVSDGEIAARFAVREQMLCIVNTRAHAHDLFTAIADQDGARHLTTLMCPLHRRATLVAIRQDLKNGRPVRLVSTSLIEAGVDVDFPEVWREATGLSSITQAAGRCNREGRLDEPGPVVVFETPDPADPTQPWLVRAMRPFWQATRPILRQGLDPLSLEAIHAYFRELYFQHSHDTHGHDGLDAARIGTVRYAILEAIAQSGAGHTYPYATIARAFRMIDTVMESVIIPWDETVRQMLHALDHAPVPPAGFMRRLQQYCVPVPAPIRLKLLAAGALRTVKPEAYGDRFVYLESMDLYDARRGLKLDDPTFRHAESNVW
>NC_011365.1|WP_012553885.1|1805379_1805760_+|histidine-triad-nucleotide-binding-protein
MAVSGLGPYDPQNVFARILRGEIPCRKIYENEYALAFHDIAPKAPVHALIIPKGPYVSFADFSSQASDAEIGGFTRAVGHVAAQLGLEDAGYRLLSNMGAAAGQEVPHFHVHLFGGAALGPMLQHG
>NC_011365.1|WP_043459250.1|1820209_1822075_-|ABC-transporter-ATP-binding-protein
MTDTQTAPETAPEAASARDGRARNEFADVLGFVIRRWLAYPGALAWTLAGVAVATVADVVTPLLAGWMVDDVAHAGPAAVSGGVLPAVTPAMEAARRGVLWMLGGLVLLGLLGVAGRRMSYLGITHLTARTMRGIAETAFARVQRFSTDWHGNTFAGSTVRRLTRGMWAVDTLADTLMLMLLPGVLVLGATTLVLALHWPSMGLLLGVSSVALVTMSTSLTLRYVAPSARLANRWDTRMGAALADAVTCNAVVKAFGAEVREEARLSWILSRWQRRTERSWVRGTNSGNLQNVAALLMRVLLIGAVLALWWRGQAGPGDVAYVLTMVFLVQGYLRDIGQQISMVQRSVNEMEELVAIYRLPPGVPDRPDAPPLRVTHGAIRFDHVGFGYRGQRGLLFRDLSIDIPAGSRVALVGPSGSGKTTLVKLLQRLYDVTDGRILIDGTDIATVTQSSLRAQIAIVQQEPVLFHRSLAENIAYGRPGAPMAEIEEAARQANAAGFIERLPKGYATMVGERGVKLSGGERQRVAIARAFLANAPILIFDEATSSLDSESEILVQDAMERLMVGRTVLVIAHRLSTVVGLDRILVFARGELREDGSHAQLITQDGGLYRRLFELQSLDG
>NC_011365.1|WP_012553891.1|1822298_1822985_+|endonuclease-III
MTQSPRPASARRRMTLKEVERFITLLAEAHPDAASELDFVDDYTLLVAVALSAQATDASVNRATKGLFRDAPDPAAMVALGEDGVAAHIRSIGLWRTKARNVVALSQALLDQHEGQVPRDRAALEALPGVGRKTANVVMNVAFGDSTMAVDTHIFRIGNRTGLAPGRTTRAVEDQLVARIPAPLLRPAHHWLILHGRYVCKARRPECWRCPAQEPCQYTAKVLVAPAR
>NC_011365.1|WP_012222299.1|1822988_1825112_-|ComEC/Rec2-family-competence-protein
MADGRREADRATVADALAARLALWLPVGIGLGIALYFSLRQEPGRAAMLAAAGVVAAALGWIARRPYDLVPRVAGGGAAAVAVGFVVACTATHRQPPLPDLPRRATIVTGQVVAVVLLPPRPGDDGPATRRVDLAGAVLDDAIDAGMPPLRRILRVRLRPDDPAVLVPGMTVRVRAMLRPPAPPAWPGGPDRQRRAWFDGTAGTGTALGPVQAAGPPPPPRTLEGLRERVVARILRVLPGAPGGVAAAVLTGSAATMPQADRDAFADAGLAHLLAVAGLHLGIVMGLVMAAARLLLACSERATLYWPCRQVAALAGLAAGIVYVVLTGAHLPALRSLTMAALVVLAILTGRRALSMRGLAVGATLLLLTGPADLLEAPLQMSLAAVMALAAGFEATRPALSRLREQPDWWRRPALHVAHLALASLLAGGATVPVVMTHFGTLQPWFVLANLLAVPLMALWILPWGVIALLLMPWGADPVALVPMGWGIRLVLGLAHAVSGWPAARVMVPAMPSWGLAAWMLGLCWLCLWTRRWRWWGVAPMALALAAPVLVARPDVLLSPDGRAVAVRDGAVLRIGPHPGADKAVESDWQQALALPLASLPQADGRLACRDEACRMDGGRVRLRLSAAAPAECAGVTLLVTLVPMDQGCPAARTLDGLTVWQGGAQAVFLRPDGPHVVSDRGVRGARPWVLAPGQHGMPTLPLAQRE
>NC_011365.1|WP_012222298.1|1825294_1826695_+|glutamate--tRNA-ligase
MTVRTRFAPSPTGLLHIGNARAALFNFLYARHHGGKFLLRIEDTDRERSTQQAVDVLFDGLAWMGITPDEEPVFQSTRQARHAEIAHHLLAQGLAYRCYCTPEELQQMRDQAAAEGRPPRYNGYWRDRDPSEAPAGAPYTVRIRAPREGETVIHDLVQGDVRVANAELDDMIILRGDGTPVYQLAVVVDDHDMDITHVIRGDDHLTNTFRQAMIYRAMGWDLPAFAHLPLIHGPDGAKLSKRHGAQSVVEFREMGYLPEALNNYLLRLGWGHGDAEILSRDEQIQLFDLDGVGRSASRMDYVKLQHLNGVWLRQADDARLTDDIVARLADRPDVSVDEAVRARILALMPGLKERAKTLVDLADSAAFLGRHVPLAFDAKAEKLLTPEARAMLGELARDLAVIEPFDAPAIDVALRRFAEHHGHKLGQVAQPLRAAMTGGATSPGIDATLAALGRDEVMARIGAVAR
>NC_011365.1|WP_012222297.1|1826691_1827657_+|aspartate-carbamoyltransferase-catalytic-subunit
MTDGPRAAAPRFFPQHARHLLGLQGMHPTRIEPFLDLAESYALMSRSRKTPRDRLLGRTVINLFFEDSTRTRTSFELAAKRLGADVINMTVASSSVNKGETLLDTAATLNAMRTDLLVVRHSQSGAPALLARKVEASVVNAGDGTHEHPTQALLDALTIRRHFGTLHGLTVAICGDVSHSRVARSNIHLLTAMGARVRVVGPPTLIPGAIGALGVDVHYTMEDGLRDVDVVMMLRMQRERMSGGQVPSAREYFRFYGLDRKRLAVARPGALVMHPGPMNRGVEIDSRVADSDQSVIREQVEMGVAVRMAVLDLLSRAGDQS
>NC_011365.1|WP_012553893.1|1827653_1828946_+|dihydroorotase
MTATLFENVRLIDPARGLDRPGRLLVRDGVIAGTDLPGAEGAPEGAGIVDGGGSILCPGLVDMRVAIGEPGFEYRETVASAARAAAAGGITTMAVLPNSQPATDDPALVRHLRARGEETGMVSILPYGALTRRCEGGELAEIGLLNEAGAVAFTDGPRALADARMMRLALTYARGFDALVVQHPEDPSLARGGCATDGELATRLGLPGIPAAAEAIMIARDLRLLELTRGRLHFSHVSTAEGLALIRAAKARDLRVTCDTAPPYFDLNETAIGDFRTYAKLSPPLRGEADRQAVCTALADGTIDAIASDHAPCDADDKRQPFAVASAGGTGLATLLAVTLAQVHGGSLPLVEALGLLTHRPAALLRSRAGTLADGAVADLCLFNPDRAWKVEADQMPGKAQNTPFDGRALEGRVLGTWKAGRMVFGQDAP
>NC_011365.1|WP_012553894.1|1828942_1829581_+|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MNGAIPAFALPLLAAIGVLAYCIGSIPFGLLLTQFGGAGDIRTIGSGNIGATNVLRTGRRGLAAATLLLDGAKGVFAVMCGFILSPFHTGPAMAVAALFAVVGHCFPVWLKFRGGKGVATGLGAVLALSPLTGLACCAIWLGVARLTRISSAGALAAFAAMPMMLAALNHTGDGPAIPVGGLLIALLVIARHRGNIRRLVDGTEPRIGRKRP
>NC_011365.1|WP_012553895.1|1829577_1830765_+|DNA-protecting-protein-DprA
MIPAGPLAARLRLARTEGVGPVGYRKLLLDYGDAERALAALPARARAAGRARALRIPPAEDIAAEIDGTMALGGRIIMLGDPDYPPLLAGIHDAPPALSVLGDAALLAGCGIAIVGARNASSNGARMAESLAATLASQGLTIISGLARGIDAAAHRGAMRAGVTIAAVAGGLDRPYPPDHAELQGRIAQHGVVVTETPLGTAPQSRHFPRRNRLIAGLALGCVVVEAALRSGSLITADLAAGYGRVLFAVPGSPLDARSRGSNALLRRGAILTESEQDVLAELPAGWQGRRQPESRQPENGVAQTQAAWPEPPAFPAPTPLSEGPGGQAEIRDAILTLLSFTPTPVDDLVRRCQFSTSAILTVLSELELAGNIETLPGGSVVLPSQPDETGRTLE
>NC_011365.1|WP_012553896.1|1830786_1833561_+|type-I-DNA-topoisomerase
MTDVVVVESPAKAKTINKYLGDGFTVLASFGHVRDLPPKDGSVRPDENFAMDWQADERGSRQMAAIAKALRGARHLYLATDPDREGEAISWHVRAMLEEKNLLKGVDVQRVTFNEITKSAIRAAMAQPRDLDQPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICEREAEIESFRAREYWTVAAQFTTPGGAAFTARLTHLAGRKLDQFDLHDEAGAMAAKAAVEAGRFAVQSVERRKVRRNPPPPFTTSTMQQEASRKLGMGAQGTMRTAQQLYEGIDLGGETVGLITYMRTDGVQMAGEAIAAIRGHIGESFGAPYVPEKARIYSTKAKNAQEAHEAIRPTDVSRTPAQMARYLNDEQRRLYELIWKRSVASQMQSAELDQVIVEIADAGGAATLRATGSMIAFDGFLKLYSEGRDDAAPKDEQDDDSRMLPPMRERDALKTGEVAADQHFTQPPPRFSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVRLDARRFVPEDRGRLVTAFLTSFFERYVDTQFTAGLEEQLDDISGGRADWRDVMSAFWQDFSRAVDQTKDLKISDVISALDADLAPHFFPAHLDGSDPRVCTACGTGRLGLKLGRYGAFIGCSNYPTCQFTRRLVVDPKEDGEADTLKDGMRLLGQTPGGEDVTVRRGPWGLYVQQGEPDPEDKKAKPRRATIPRGIEGDKITLDQALGLLSLPRVVGIHPETGEQIEAGLGRFGPYVKMGAVYGSLDKDDDILTVGLNRAVDVLARKLASVRTIAPHPKDGEPVIVRKGRFGPYIQHGTMVVNVPRGEAMEDVTLDQAVALLAEKGKPLKPKGKAAAKKAPARKTAARKAPAKTAAKKAAPDGDADTQARAAKPPARKAAARKTPAGKATGKTAKGKAEPGEGAGPRTRRTATEAG
>NC_011365.1|WP_012222292.1|1833563_1835909_+|ribonuclease-R
MGGRNPSDPQPTACPSPDVPPTDPRPPAPPQPGGGLPDREALRRFVTEASGRVGKREIARAFNLGPEHKAALRAMLRELALEGTLVPAGARRFRASAAMPEAALVQVTGTDPDGDPIARPVVWDGDGPAPVVFMHPEQKGRPALAPGERVVARLKRLGPGRYEGRTLRRLTDAPGRIVGVFRPTTLYDGPGPLAPPRRHAEAGRLVPADRRAKAEWIIPAGETMGAEAEEVVVAEPLPLAGSGLKPARIVARLGPMGDARSVSLLAIHTHSIPDQFPAEALSEAERARGVSPEGREDLRDVPLITIDGEDARDFDDAVYAEPDGDGFRLIVAIADVAHYVRPGSALDREARRRGNSVYFPDRVVPMLPEALSNGWCSLRPGEDRGCLFAEIFIDAAGNKTRHRFGRGIMRSAARLTYDQAQAIVGNVEESQQETGLPDGLINTLFTAWRALSTARARRGTLDLDVPERVVRLDTSGRITAIEPRPRHDSHRLIEEFMVLANVAAAEELERRRRPCLYRIHAPPSPERAEAMRDSLSAMGFDLPPPGALRARDLGAVLARAAQGEASGPASGTPVSGTLVSETILRAQSQAEYSPDNIGHFGLALPAYAHFTSPIRRYADLLVHRALIGMGTQPADGMPAADAACLDEIGEQVSTAERRAALAERETTERYVAAWLADRVGAEFSGHVSGVTRFGAFVTLTQTGATGLVPVSTLPDDVWTHDEKTQTLRGRHGGLALRLGQPVTVRLVEATPVTGGLLFALVGANPAAASGPARRARGTRPR

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Crispr_ID: NC_011365_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011365_4

1819355-1820112

TypeI

I-C

Consensus_repeat	Method
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	PILER-CR
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CRT

11 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_011365_4

>merge|NC_011365|4|1819355-1820112|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTTAGTTTCATGAGTTTGGTGAGTTATACGAACTGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGTGATGCGTGGGGCACGCGCGAACGACTTGGCCTGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACAGCCTTCGTCAGCCAGCGGTCACGTGGAGGCGGTGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGTCTCAACGTTGGGAAGCTCTTTTACCGCCATGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTCTCATGCGACGTCTCCAAACGGCAGGGTCTGCTGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACATCGCGCATGGACCGCACCACGGGATTCCGGTCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACTGGATCTCACGGCCCCGAAAGCACCCCTGAACTGGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACGGAATGTGAGGGATCGCGATGCGGAATGATTGGTGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACCGTCACTGTGACGGGCGCTGACACGTTCACGTATCGTCGCTCCCTGTGCGGGAGCGTGGATTGAAACACGAACAGGATGACGCCCAGGCCGCCGATGCCGAGTCGCTCCCCGTGCGGGAGCGTGGATTGAAACGCCGACCGCGTCGGACAGGAGTCGCAAGGTTGTCGTCGCTCCCCACGCGGAAGCGGGGATTAAAAC

>NC_011365|4|4|1819355-1820046|PILER-CR
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TTAGTTTCATGAGTTTGGTGAGTTATACGAACT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTGATGCGTGGGGCACGCGCGAACGACTTGGCCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGCCTTCGTCAGCCAGCGGTCACGTGGAGGCGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTCTCAACGTTGGGAAGCTCTTTTACCGCCATG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCTCATGCGACGTCTCCAAACGGCAGGGTCTGCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCGCGCATGGACCGCACCACGGGATTCCGGTC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGGATCTCACGGCCCCGAAAGCACCCCTGAACTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GGAATGTGAGGGATCGCGATGCGGAATGATTGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTCACTGTGACGGGCGCTGACACGTTCACGTATC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ACGAACAGGATGACGCCCAGGCCGCCGATGCCGA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC

>NC_011365|4|4|1819355-1820112|CRISPRCasFinder
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TTAGTTTCATGAGTTTGGTGAGTTATACGAACT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTGATGCGTGGGGCACGCGCGAACGACTTGGCCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGCCTTCGTCAGCCAGCGGTCACGTGGAGGCGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTCTCAACGTTGGGAAGCTCTTTTACCGCCATG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCTCATGCGACGTCTCCAAACGGCAGGGTCTGCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCGCGCATGGACCGCACCACGGGATTCCGGTC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGGATCTCACGGCCCCGAAAGCACCCCTGAACTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GGAATGTGAGGGATCGCGATGCGGAATGATTGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTCACTGTGACGGGCGCTGACACGTTCACGTATC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ACGAACAGGATGACGCCCAGGCCGCCGATGCCGA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	GCCGACCGCGTCGGACAGGAGTCGCAAGGTTGTC
GTCGCTCCCCACGCGGAAGCGGGGATTAAAAC

>NC_011365|4|4|1819355-1820112|CRT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TTAGTTTCATGAGTTTGGTGAGTTATACGAACT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTGATGCGTGGGGCACGCGCGAACGACTTGGCCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	AGCCTTCGTCAGCCAGCGGTCACGTGGAGGCGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTCTCAACGTTGGGAAGCTCTTTTACCGCCATG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TCTCATGCGACGTCTCCAAACGGCAGGGTCTGCT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ATCGCGCATGGACCGCACCACGGGATTCCGGTC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	TGGATCTCACGGCCCCGAAAGCACCCCTGAACTG
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	GGAATGTGAGGGATCGCGATGCGGAATGATTGGT
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	CGTCACTGTGACGGGCGCTGACACGTTCACGTATC
GTCGCTCCCTGTGCGGGAGCGTGGATTGAAAC	ACGAACAGGATGACGCCCAGGCCGCCGATGCCGA
GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC	GCCGACCGCGTCGGACAGGAGTCGCAAGGTTGTC
GTCGCTCCCCACGCGGAAGCGGGGATTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011365.1\|WP_012222298.1\|1825294_1826695_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NC_011365.1\|WP_012222299.1\|1822988_1825112_-\|ComEC/Rec2-family-competence-protein	unknown	unknown	gnl\|CDD\|377126
NC_011365.1\|WP_012553885.1\|1805379_1805760_+\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
NC_011365.1\|WP_012222307.1\|1812618_1813275_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NC_011365.1\|WP_012553895.1\|1829577_1830765_+\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NC_011365.1\|WP_012553893.1\|1827653_1828946_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NC_011365.1\|WP_012553894.1\|1828942_1829581_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NC_011365.1\|WP_012553888.1\|1811671_1812610_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_011365.1\|WP_012222311.1\|1808709_1808934_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
NC_011365.1\|WP_012222297.1\|1826691_1827657_+\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NC_011365.1\|WP_012553886.1\|1809187_1809859_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_011365.1\|WP_012222292.1\|1833563_1835909_+\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NC_011365.1\|WP_012222312.1\|1808299_1808710_-\|tRNA(fMet)-specific-endonuclease-VapC	unknown	unknown	gnl\|CDD\|350312
NC_011365.1\|WP_012222313.1\|1805790_1808139_+\|CRISPR-associated-endonuclease-Cas3''	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NC_011365.1\|WP_043459250.1\|1820209_1822075_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NC_011365.1\|WP_012553889.1\|1813274_1814315_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_011365.1\|WP_012553896.1\|1830786_1833561_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NC_011365.1\|WP_012222305.1\|1814318_1814609_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_011365.1\|WP_012553887.1\|1809855_1811679_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_011365.1\|WP_012553891.1\|1822298_1822985_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255

Protein	Function_ID	Function_description	E-value
NC_011365.1\|WP_012222298.1\|1825294_1826695_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NC_011365.1\|WP_012222299.1\|1822988_1825112_-\|ComEC/Rec2-family-competence-protein	gnl\|CDD\|377126	pfam03772, Competence, Competence protein. Members of this family are integral membrane proteins with 6 predicted transmembrane helices. Some members of this family have been shown to be essential for bacterial competence in uptake of extracellular DNA. These proteins may transport DNA across the cell membrane. These proteins contain a highly conserved motif in the amino terminal transmembrane region that has two histidines that may form a metal binding site.	8.70268e-52
NC_011365.1\|WP_012553885.1\|1805379_1805760_+\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	1.46096e-44
NC_011365.1\|WP_012222307.1\|1812618_1813275_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.71876e-39
NC_011365.1\|WP_012553895.1\|1829577_1830765_+\|DNA-protecting-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	3.02986e-106
NC_011365.1\|WP_012553893.1\|1827653_1828946_+\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	2.3564e-158
NC_011365.1\|WP_012553894.1\|1828942_1829581_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	4.11803e-64
NC_011365.1\|WP_012553888.1\|1811671_1812610_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	2.75473e-146
NC_011365.1\|WP_012222311.1\|1808709_1808934_-\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	3.55301e-15
NC_011365.1\|WP_012222297.1\|1826691_1827657_+\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	0
NC_011365.1\|WP_012553886.1\|1809187_1809859_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.91057e-110
NC_011365.1\|WP_012222292.1\|1833563_1835909_+\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NC_011365.1\|WP_012222312.1\|1808299_1808710_-\|tRNA(fMet)-specific-endonuclease-VapC	gnl\|CDD\|350312	cd18745, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.52982e-53
NC_011365.1\|WP_012222313.1\|1805790_1808139_+\|CRISPR-associated-endonuclease-Cas3''	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.87121e-56
NC_011365.1\|WP_043459250.1\|1820209_1822075_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	6.84262e-147
NC_011365.1\|WP_012553889.1\|1813274_1814315_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_011365.1\|WP_012553896.1\|1830786_1833561_+\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NC_011365.1\|WP_012222305.1\|1814318_1814609_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.50958e-31
NC_011365.1\|WP_012553887.1\|1809855_1811679_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_011365.1\|WP_012553891.1\|1822298_1822985_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	5.87187e-96

>NC_011365.1|WP_012222305.1|1814318_1814609_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTEDAAGRRRLRRVARACLDFGQRVQYSVFECEVDPARWTALRARLIAETDTTKDSLRFYQLGAKGKQRVEHIGAKPVLDLDGPLLF
>NC_011365.1|WP_012553889.1|1813274_1814315_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRHLNTIYVTTEDAWLRKDGANVVVEVEGQERGRAPMHLLDGIMCFGRIGASPALMGACAESGLALSWLSPQGRFLARVEGPRSGNVLLRRTQYRTADSTERALPIVRNMVAAKAANQRTVIRRALRDHGPGLNAQERTRLDEAERRLTIIVRHITQAPDVATARGMEGEAAQVYFGIFNLLIRVEGDAFTFGGRSRRPPLDRVNALLSFLYAVLGHDCRSALESVGLDPQVGFLHADRPGRNSLALDMMEELRPVLADRLAVSLINRRQVAAGDFTVSDGGAVLLNDDARKTVLVAWQDRKKKELRHPFLNESLTFGLVAHVQALLLSRHLRGELDGYPAFVWK
>NC_011365.1|WP_012222307.1|1812618_1813275_+|CRISPR-associated-protein-Cas4
MHAPPDNATEDALVPISALQHHLFCPRQCALIHVERIWAENGATAEGRILHERVDDGRPDRRTGVRTVRALTIRSLTLGVFGKADAVEFHGVETAAVPYPVEYKRGRPKAHRADEVQLCAQAICLEDMFGHSVPEGALFYGQPRRRTVVVFDGALRTLTEQTARKVRAMIADCLTPPPVYKASCNQCSLQHACQPRRLEKPPSIGRWFATQLLEEDNA
>NC_011365.1|WP_012553888.1|1811671_1812610_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTEATAMQNRHEFVLFFDVTNGNPNGDPDAGNMPRLDPETNQGLVSDVALKRKVRNYVSLARPDMPGFEIYMSEGMALNRQHRKAWNAIMPEVTKDESFKTLPKDEDKARALTRWMCTNFWDIRTFGAVMTTSVNSGQVRGPVQFSFARSVEPVLPLEIAITRMAATTEADAESKGGRTMGRKHIVPYGLYRMHGYISAPLASHPVKGTGFSESDLELLLEALTGMFDHDRSAARGEMATRKLIVFRHESALGNARAQDLFDRVTVQRAYQGSAHPIGSAAIDNWPPARAWGDYQVLIDRDAVPAGIEIIER
>NC_011365.1|WP_012553887.1|1809855_1811679_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MTIQKRPGPLEALVDFYARMDDAEDPGWGREKFGWCVVIDAEGQPIDVLDQHDHDGRKPRPRLFLVPAAVKRASGIAPNFLWDKTSYVLGRTAGAGKRTVQEHEAFVAFNLKRMAETSDVGLVAFRRFLERWTPAQFDTPLFPAEMLDANIMFRLEGDRDYLHRRPAAQRLVEAPLDNGHERQSFCLVTGQRAAPARLHPTIKGVEGAQTSGASLVSFNLDAFCSYGRKQGDNAPTSQAAAFRYGAALNRLLTRDGPNRLRRPIGDATVIFWADGSDAQVAKKADAWIQEAIAPNLLDADAARRIGEELTALAQGRPLSQLRPDIPPDTRFYVMGLSPNAARLSVRFWLSDSLDVFAHRLAEHYEDTRIAPSPWSRPPTVNLLLARTVAAQDKYDNIPPLLAGEIMRAILTGTPYPRTWLAAILMRLRAGDDPATGWHAAALRAVLQRRRRLTKNASDNGDVPVSLNRDYPSIGYQLGRLFAVYELAQRAALGIGVKATMRDKYFAAASAAPASIFPVIIRNSQNHLSNVRKRTPGWAGVIERELDEIFGRITPSGPHVLPRALSLEHQGEFAIGYYHQRRERIGGRMAETALQDDEQDIEDNATHD
>NC_011365.1|WP_012553886.1|1809187_1809859_+|type-I-C-CRISPR-associated-protein-Cas5
MGIRLHVWGERACFTRPELKSERVSYDVLTPSAARGIVEAIHWKPAIRWHIDRIHVLKPIRFQSIRRNEVGAKVSAVLAARAMTAGHTSGLGLAVDENRQQRAATILVDVAYVIEAHFTLTARAGAGDTAAKHLSMFNRRATQGQCFHRPCLGTREFPADFALITEEAPLPASAFPPDLQAVDLGWMLHDIDFADQRTPRFFRACIESGVIAVPAADSPDLIA
>NC_011365.1|WP_012222311.1|1808709_1808934_-|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MLTRTTLFLSNRSQAVRLPKAVAFGEGVREVVIVPEGPRRIIAPAEAAWDDFFAAPGLDLGERSQPAMQERERF
>NC_011365.1|WP_012222312.1|1808299_1808710_-|tRNA(fMet)-specific-endonuclease-VapC
MLRFLLDTNLCIRVLRDRPQGLRARFNAYAEDLCISDVVLYELLYGAERSSDPVRVRREVEHFADRLNVLPFDSAAASHTAEIRDDLERRGCVIGPYDLMIAGHARSRGLVVVTGNLGEFRRVAGLRAEDWFTNVA
>NC_011365.1|WP_012222313.1|1805790_1808139_+|CRISPR-associated-endonuclease-Cas3''
MDIFAHSLPDDPSTERWETLRAHSLRVAALAEQFAAVFGAAHKGRALGLLHDIGKCSAAYQDYIRKPGPCHGPDHSTAGARAVVASYGPLGRLLAFAIAGHHSGLMDGSGHDGPGRSLNERLDEQAYAVPASDNWPDYCPARPTLQDLVDESPPVASTDYPGFATSFFVRMLFSCLTDADFIATEGYYAESAGLPPPARGGTITQAHLDAIRRFMKTRRRDDTPLNRLRSRILDHAIGKAALGPGLFTMTVPTGGGKTLASLSFALDHAVRHGLRRVIYVIPFTSIIEQTATVFREALGTTDGILEHHSNFDWDRRAPAGENDEEAEGADGLAKLRRDAENWDAPIIVTTSVQFFESLFAARGSQARKLHNIAGSVIILDEVQTLPLHLLRPCLAVLDELARNYGVSIVLCTATQSALRQIDDALPPGRKGRRAGLDIQDTHELAPEPAALYDALRRATVTWRKEPVSDGEIAARFAVREQMLCIVNTRAHAHDLFTAIADQDGARHLTTLMCPLHRRATLVAIRQDLKNGRPVRLVSTSLIEAGVDVDFPEVWREATGLSSITQAAGRCNREGRLDEPGPVVVFETPDPADPTQPWLVRAMRPFWQATRPILRQGLDPLSLEAIHAYFRELYFQHSHDTHGHDGLDAARIGTVRYAILEAIAQSGAGHTYPYATIARAFRMIDTVMESVIIPWDETVRQMLHALDHAPVPPAGFMRRLQQYCVPVPAPIRLKLLAAGALRTVKPEAYGDRFVYLESMDLYDARRGLKLDDPTFRHAESNVW
>NC_011365.1|WP_012553885.1|1805379_1805760_+|histidine-triad-nucleotide-binding-protein
MAVSGLGPYDPQNVFARILRGEIPCRKIYENEYALAFHDIAPKAPVHALIIPKGPYVSFADFSSQASDAEIGGFTRAVGHVAAQLGLEDAGYRLLSNMGAAAGQEVPHFHVHLFGGAALGPMLQHG
>NC_011365.1|WP_043459250.1|1820209_1822075_-|ABC-transporter-ATP-binding-protein
MTDTQTAPETAPEAASARDGRARNEFADVLGFVIRRWLAYPGALAWTLAGVAVATVADVVTPLLAGWMVDDVAHAGPAAVSGGVLPAVTPAMEAARRGVLWMLGGLVLLGLLGVAGRRMSYLGITHLTARTMRGIAETAFARVQRFSTDWHGNTFAGSTVRRLTRGMWAVDTLADTLMLMLLPGVLVLGATTLVLALHWPSMGLLLGVSSVALVTMSTSLTLRYVAPSARLANRWDTRMGAALADAVTCNAVVKAFGAEVREEARLSWILSRWQRRTERSWVRGTNSGNLQNVAALLMRVLLIGAVLALWWRGQAGPGDVAYVLTMVFLVQGYLRDIGQQISMVQRSVNEMEELVAIYRLPPGVPDRPDAPPLRVTHGAIRFDHVGFGYRGQRGLLFRDLSIDIPAGSRVALVGPSGSGKTTLVKLLQRLYDVTDGRILIDGTDIATVTQSSLRAQIAIVQQEPVLFHRSLAENIAYGRPGAPMAEIEEAARQANAAGFIERLPKGYATMVGERGVKLSGGERQRVAIARAFLANAPILIFDEATSSLDSESEILVQDAMERLMVGRTVLVIAHRLSTVVGLDRILVFARGELREDGSHAQLITQDGGLYRRLFELQSLDG
>NC_011365.1|WP_012553891.1|1822298_1822985_+|endonuclease-III
MTQSPRPASARRRMTLKEVERFITLLAEAHPDAASELDFVDDYTLLVAVALSAQATDASVNRATKGLFRDAPDPAAMVALGEDGVAAHIRSIGLWRTKARNVVALSQALLDQHEGQVPRDRAALEALPGVGRKTANVVMNVAFGDSTMAVDTHIFRIGNRTGLAPGRTTRAVEDQLVARIPAPLLRPAHHWLILHGRYVCKARRPECWRCPAQEPCQYTAKVLVAPAR
>NC_011365.1|WP_012222299.1|1822988_1825112_-|ComEC/Rec2-family-competence-protein
MADGRREADRATVADALAARLALWLPVGIGLGIALYFSLRQEPGRAAMLAAAGVVAAALGWIARRPYDLVPRVAGGGAAAVAVGFVVACTATHRQPPLPDLPRRATIVTGQVVAVVLLPPRPGDDGPATRRVDLAGAVLDDAIDAGMPPLRRILRVRLRPDDPAVLVPGMTVRVRAMLRPPAPPAWPGGPDRQRRAWFDGTAGTGTALGPVQAAGPPPPPRTLEGLRERVVARILRVLPGAPGGVAAAVLTGSAATMPQADRDAFADAGLAHLLAVAGLHLGIVMGLVMAAARLLLACSERATLYWPCRQVAALAGLAAGIVYVVLTGAHLPALRSLTMAALVVLAILTGRRALSMRGLAVGATLLLLTGPADLLEAPLQMSLAAVMALAAGFEATRPALSRLREQPDWWRRPALHVAHLALASLLAGGATVPVVMTHFGTLQPWFVLANLLAVPLMALWILPWGVIALLLMPWGADPVALVPMGWGIRLVLGLAHAVSGWPAARVMVPAMPSWGLAAWMLGLCWLCLWTRRWRWWGVAPMALALAAPVLVARPDVLLSPDGRAVAVRDGAVLRIGPHPGADKAVESDWQQALALPLASLPQADGRLACRDEACRMDGGRVRLRLSAAAPAECAGVTLLVTLVPMDQGCPAARTLDGLTVWQGGAQAVFLRPDGPHVVSDRGVRGARPWVLAPGQHGMPTLPLAQRE
>NC_011365.1|WP_012222298.1|1825294_1826695_+|glutamate--tRNA-ligase
MTVRTRFAPSPTGLLHIGNARAALFNFLYARHHGGKFLLRIEDTDRERSTQQAVDVLFDGLAWMGITPDEEPVFQSTRQARHAEIAHHLLAQGLAYRCYCTPEELQQMRDQAAAEGRPPRYNGYWRDRDPSEAPAGAPYTVRIRAPREGETVIHDLVQGDVRVANAELDDMIILRGDGTPVYQLAVVVDDHDMDITHVIRGDDHLTNTFRQAMIYRAMGWDLPAFAHLPLIHGPDGAKLSKRHGAQSVVEFREMGYLPEALNNYLLRLGWGHGDAEILSRDEQIQLFDLDGVGRSASRMDYVKLQHLNGVWLRQADDARLTDDIVARLADRPDVSVDEAVRARILALMPGLKERAKTLVDLADSAAFLGRHVPLAFDAKAEKLLTPEARAMLGELARDLAVIEPFDAPAIDVALRRFAEHHGHKLGQVAQPLRAAMTGGATSPGIDATLAALGRDEVMARIGAVAR
>NC_011365.1|WP_012222297.1|1826691_1827657_+|aspartate-carbamoyltransferase-catalytic-subunit
MTDGPRAAAPRFFPQHARHLLGLQGMHPTRIEPFLDLAESYALMSRSRKTPRDRLLGRTVINLFFEDSTRTRTSFELAAKRLGADVINMTVASSSVNKGETLLDTAATLNAMRTDLLVVRHSQSGAPALLARKVEASVVNAGDGTHEHPTQALLDALTIRRHFGTLHGLTVAICGDVSHSRVARSNIHLLTAMGARVRVVGPPTLIPGAIGALGVDVHYTMEDGLRDVDVVMMLRMQRERMSGGQVPSAREYFRFYGLDRKRLAVARPGALVMHPGPMNRGVEIDSRVADSDQSVIREQVEMGVAVRMAVLDLLSRAGDQS
>NC_011365.1|WP_012553893.1|1827653_1828946_+|dihydroorotase
MTATLFENVRLIDPARGLDRPGRLLVRDGVIAGTDLPGAEGAPEGAGIVDGGGSILCPGLVDMRVAIGEPGFEYRETVASAARAAAAGGITTMAVLPNSQPATDDPALVRHLRARGEETGMVSILPYGALTRRCEGGELAEIGLLNEAGAVAFTDGPRALADARMMRLALTYARGFDALVVQHPEDPSLARGGCATDGELATRLGLPGIPAAAEAIMIARDLRLLELTRGRLHFSHVSTAEGLALIRAAKARDLRVTCDTAPPYFDLNETAIGDFRTYAKLSPPLRGEADRQAVCTALADGTIDAIASDHAPCDADDKRQPFAVASAGGTGLATLLAVTLAQVHGGSLPLVEALGLLTHRPAALLRSRAGTLADGAVADLCLFNPDRAWKVEADQMPGKAQNTPFDGRALEGRVLGTWKAGRMVFGQDAP
>NC_011365.1|WP_012553894.1|1828942_1829581_+|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MNGAIPAFALPLLAAIGVLAYCIGSIPFGLLLTQFGGAGDIRTIGSGNIGATNVLRTGRRGLAAATLLLDGAKGVFAVMCGFILSPFHTGPAMAVAALFAVVGHCFPVWLKFRGGKGVATGLGAVLALSPLTGLACCAIWLGVARLTRISSAGALAAFAAMPMMLAALNHTGDGPAIPVGGLLIALLVIARHRGNIRRLVDGTEPRIGRKRP
>NC_011365.1|WP_012553895.1|1829577_1830765_+|DNA-protecting-protein-DprA
MIPAGPLAARLRLARTEGVGPVGYRKLLLDYGDAERALAALPARARAAGRARALRIPPAEDIAAEIDGTMALGGRIIMLGDPDYPPLLAGIHDAPPALSVLGDAALLAGCGIAIVGARNASSNGARMAESLAATLASQGLTIISGLARGIDAAAHRGAMRAGVTIAAVAGGLDRPYPPDHAELQGRIAQHGVVVTETPLGTAPQSRHFPRRNRLIAGLALGCVVVEAALRSGSLITADLAAGYGRVLFAVPGSPLDARSRGSNALLRRGAILTESEQDVLAELPAGWQGRRQPESRQPENGVAQTQAAWPEPPAFPAPTPLSEGPGGQAEIRDAILTLLSFTPTPVDDLVRRCQFSTSAILTVLSELELAGNIETLPGGSVVLPSQPDETGRTLE
>NC_011365.1|WP_012553896.1|1830786_1833561_+|type-I-DNA-topoisomerase
MTDVVVVESPAKAKTINKYLGDGFTVLASFGHVRDLPPKDGSVRPDENFAMDWQADERGSRQMAAIAKALRGARHLYLATDPDREGEAISWHVRAMLEEKNLLKGVDVQRVTFNEITKSAIRAAMAQPRDLDQPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICEREAEIESFRAREYWTVAAQFTTPGGAAFTARLTHLAGRKLDQFDLHDEAGAMAAKAAVEAGRFAVQSVERRKVRRNPPPPFTTSTMQQEASRKLGMGAQGTMRTAQQLYEGIDLGGETVGLITYMRTDGVQMAGEAIAAIRGHIGESFGAPYVPEKARIYSTKAKNAQEAHEAIRPTDVSRTPAQMARYLNDEQRRLYELIWKRSVASQMQSAELDQVIVEIADAGGAATLRATGSMIAFDGFLKLYSEGRDDAAPKDEQDDDSRMLPPMRERDALKTGEVAADQHFTQPPPRFSEASLVKKMEEIGIGRPSTYASILTVLRDRNYVRLDARRFVPEDRGRLVTAFLTSFFERYVDTQFTAGLEEQLDDISGGRADWRDVMSAFWQDFSRAVDQTKDLKISDVISALDADLAPHFFPAHLDGSDPRVCTACGTGRLGLKLGRYGAFIGCSNYPTCQFTRRLVVDPKEDGEADTLKDGMRLLGQTPGGEDVTVRRGPWGLYVQQGEPDPEDKKAKPRRATIPRGIEGDKITLDQALGLLSLPRVVGIHPETGEQIEAGLGRFGPYVKMGAVYGSLDKDDDILTVGLNRAVDVLARKLASVRTIAPHPKDGEPVIVRKGRFGPYIQHGTMVVNVPRGEAMEDVTLDQAVALLAEKGKPLKPKGKAAAKKAPARKTAARKAPAKTAAKKAAPDGDADTQARAAKPPARKAAARKTPAGKATGKTAKGKAEPGEGAGPRTRRTATEAG
>NC_011365.1|WP_012222292.1|1833563_1835909_+|ribonuclease-R
MGGRNPSDPQPTACPSPDVPPTDPRPPAPPQPGGGLPDREALRRFVTEASGRVGKREIARAFNLGPEHKAALRAMLRELALEGTLVPAGARRFRASAAMPEAALVQVTGTDPDGDPIARPVVWDGDGPAPVVFMHPEQKGRPALAPGERVVARLKRLGPGRYEGRTLRRLTDAPGRIVGVFRPTTLYDGPGPLAPPRRHAEAGRLVPADRRAKAEWIIPAGETMGAEAEEVVVAEPLPLAGSGLKPARIVARLGPMGDARSVSLLAIHTHSIPDQFPAEALSEAERARGVSPEGREDLRDVPLITIDGEDARDFDDAVYAEPDGDGFRLIVAIADVAHYVRPGSALDREARRRGNSVYFPDRVVPMLPEALSNGWCSLRPGEDRGCLFAEIFIDAAGNKTRHRFGRGIMRSAARLTYDQAQAIVGNVEESQQETGLPDGLINTLFTAWRALSTARARRGTLDLDVPERVVRLDTSGRITAIEPRPRHDSHRLIEEFMVLANVAAAEELERRRRPCLYRIHAPPSPERAEAMRDSLSAMGFDLPPPGALRARDLGAVLARAAQGEASGPASGTPVSGTLVSETILRAQSQAEYSPDNIGHFGLALPAYAHFTSPIRRYADLLVHRALIGMGTQPADGMPAADAACLDEIGEQVSTAERRAALAERETTERYVAAWLADRVGAEFSGHVSGVTRFGAFVTLTQTGATGLVPVSTLPDDVWTHDEKTQTLRGRHGGLALRLGQPVTVRLVEATPVTGGLLFALVGANPAAASGPARRARGTRPR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NC_011365_3	3.21\|1816150\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816150-1816182	33	NC_011365.1	2742257-2742289	0	1.0

1. spacer 3.21|1816150|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to position: 2742257-2742289, mismatch: 0, identity: 1.0

atgcgcgaggctgccgctttcatccgcgctaac	CRISPR spacer
atgcgcgaggctgccgctttcatccgcgctaac	Protospacer
*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011365_2	2.2\|460262\|31\|NC_011365\|CRISPRCasFinder,CRT	460262-460292	31	NZ_AP018516	Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence	169357-169387	2	0.935
NC_011365_2	2.2\|460262\|31\|NC_011365\|CRISPRCasFinder,CRT	460262-460292	31	NZ_CP043508	Acetobacter sp. KACC 21233 plasmid unnamed2, complete sequence	1178-1208	2	0.935
NC_011365_2	2.27\|461786\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461786-461817	32	NZ_CP022700	Acetobacter tropicalis strain BDGP1 plasmid pAtBDGP1A, complete sequence	61570-61601	2	0.938
NC_011365_3	3.44\|1817668\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817668-1817701	34	LC155907	Achromobacter xylosoxidans plasmid pKUN4507_2 DNA, complete sequence, strain: KUN4507	2086-2119	2	0.941
NC_011365_3	3.44\|1817668\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817668-1817701	34	NZ_MF344578	Pseudomonas aeruginosa strain 60512 plasmid p60512-IMP, complete sequence	14113-14146	2	0.941
NC_011365_3	3.44\|1817668\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817668-1817701	34	NC_022242	Achromobacter xylosoxidans subsp. denitrificans pAX22 plasmid, complete sequence	15523-15556	2	0.941
NC_011365_3	3.44\|1817668\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817668-1817701	34	NZ_CP026223	Aeromonas sp. ASNIH3 plasmid pAER-3367, complete sequence	16771-16804	2	0.941
NC_011365_2	2.14\|460993\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460993-461024	32	NC_030907	Gordonia phage GMA5, complete genome	8642-8673	5	0.844
NC_011365_2	2.22\|461481\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461481-461512	32	NC_020205	Xanthomonas citri phage CP2 DNA, complete genome	13244-13275	5	0.844
NC_011365_1	1.2\|388405\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388405-388434	30	NC_013449	Streptomyces sp. W9 plasmid pCQ3, complete sequence	17911-17940	6	0.8
NC_011365_1	1.2\|388405\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388405-388434	30	NC_019307	Streptomyces sp. W75 plasmid pCQ4, complete sequence	22096-22125	6	0.8
NC_011365_1	1.3\|388471\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388471-388500	30	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	1704193-1704222	6	0.8
NC_011365_1	1.4\|388537\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388537-388566	30	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1004323-1004352	6	0.8
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NC_023285	Streptomyces sp. F8 plasmid pFRL5, complete sequence	50643-50674	6	0.812
NC_011365_2	2.15\|461054\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461054-461085	32	NZ_CP015530	Rhodococcus sp. WB1 plasmid pWB1, complete sequence	115542-115573	6	0.812
NC_011365_2	2.28\|461847\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461847-461878	32	MN585195	Pseudomonas phage AUS531phi, complete genome	7824-7855	6	0.812
NC_011365_3	3.22\|1816215\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816215-1816248	34	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	21305-21338	6	0.824
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	598661-598694	6	0.824
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	34383-34416	6	0.824
NC_011365_3	3.37\|1817205\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817205-1817238	34	MT778837	Rhizobium phage AF3, complete genome	139553-139586	6	0.824
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	632214-632247	6	0.824
NC_011365_1	1.1\|388339\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388339-388368	30	NZ_CP042500	Enterobacter sp. E76 plasmid pE76_001, complete sequence	60272-60301	7	0.767
NC_011365_1	1.1\|388339\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388339-388368	30	NC_008195	Mycobacterium phage Cooper, complete genome	13311-13340	7	0.767
NC_011365_1	1.2\|388405\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388405-388434	30	NC_019387	Thermus oshimai JL-2 plasmid pTHEOS01, complete sequence	204620-204649	7	0.767
NC_011365_1	1.3\|388471\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388471-388500	30	NZ_LR134446	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 4, complete sequence	13624-13653	7	0.767
NC_011365_1	1.3\|388471\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388471-388500	30	MN234216	Streptomyces phage Gilgamesh, complete genome	32078-32107	7	0.767
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NC_006462	Thermus thermophilus HB8 plasmid pTT27, complete sequence	37716-37747	7	0.781
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NC_017273	Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence	341850-341881	7	0.781
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_CP014142	Thermus parvatiensis strain RL plasmid pTP143, complete sequence	70726-70757	7	0.781
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NC_005838	Thermus thermophilus HB27 plasmid pTT27, complete sequence	1822-1853	7	0.781
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_AP019802	Thermus thermophilus strain HC11 plasmid pHC11, complete sequence	161988-162019	7	0.781
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NC_017588	Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence	156814-156845	7	0.781
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_CP016313	Thermus brockianus strain GE-1 plasmid pTB1, complete sequence	338133-338164	7	0.781
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_AP019795	Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence	188454-188485	7	0.781
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_LR027520	Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence	242856-242887	7	0.781
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_AP019793	Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence	217868-217899	7	0.781
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	1023676-1023707	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_LT591906	Neisseria gonorrhoeae strain WHO M plasmid 3, complete sequence	16191-16222	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_LT591899	Neisseria gonorrhoeae strain WHO G plasmid 2, complete sequence	19141-19172	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_LT592164	Neisseria gonorrhoeae strain WHO_W plasmid 2, complete sequence	16191-16222	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_CP043813	Neisseria gonorrhoeae strain NG290 plasmid p1, complete sequence	31049-31080	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_AP018378	Neisseria gonorrhoeae strain FC428 plasmid pConjugative, complete sequence	16202-16233	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_CP043872	Neisseria gonorrhoeae strain NG196 plasmid p1, complete sequence	2245-2276	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_CP043817	Neisseria gonorrhoeae strain NG251 plasmid p1, complete sequence	1801-1832	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	CP002441	Neisseria gonorrhoeae TCDC-NG08107 plasmid pNGTCDC08107, complete sequence	23750-23781	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NC_014105	Neisseria gonorrhoeae plasmid pEP5289, complete sequence	19141-19172	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_LT592148	Neisseria gonorrhoeae strain WHO O plasmid 3, complete sequence	16191-16222	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_LT591912	Neisseria gonorrhoeae strain WHO N plasmid 3, complete sequence	19141-19172	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_AP019854	Neisseria gonorrhoeae strain SS3160 plasmid pConjugative, complete sequence	6250-6281	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_LT591902	Neisseria gonorrhoeae strain WHO L plasmid 2, complete sequence	16191-16222	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_CP045833	Neisseria gonorrhoeae strain AUSMDU00010541 plasmid pAUSMDU00010541_01, complete sequence	31917-31948	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_CP020416	Neisseria gonorrhoeae strain FDAARGOS_205 plasmid unnamed1, complete sequence	32668-32699	7	0.781
NC_011365_2	2.12\|460871\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460871-460902	32	NZ_CP034033	Neisseria gonorrhoeae strain FQ01 plasmid unnamed1, complete sequence	16188-16219	7	0.781
NC_011365_2	2.14\|460993\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460993-461024	32	NZ_CP023721	Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence	144906-144937	7	0.781
NC_011365_2	2.14\|460993\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460993-461024	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5744165-5744196	7	0.781
NC_011365_2	2.15\|461054\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461054-461085	32	NZ_CP038031	Rhodococcus ruber strain R1 plasmid unnamed1, complete sequence	169134-169165	7	0.781
NC_011365_2	2.15\|461054\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461054-461085	32	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	468306-468337	7	0.781
NC_011365_2	2.15\|461054\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461054-461085	32	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	740452-740483	7	0.781
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	NZ_LR134461	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence	54065-54096	7	0.781
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	NZ_CP029453	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence	365224-365255	7	0.781
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	NC_016623	Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence	469549-469580	7	0.781
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	731192-731223	7	0.781
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1026042-1026073	7	0.781
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	404468-404499	7	0.781
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	NZ_CP023069	Ensifer sojae CCBAU 05684 plasmid pSJ05684a, complete sequence	374013-374044	7	0.781
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	NZ_CP029233	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436a, complete sequence	381730-381761	7	0.781
NC_011365_2	2.20\|461359\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461359-461390	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1167916-1167947	7	0.781
NC_011365_2	2.23\|461542\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461542-461573	32	NZ_CP043960	Streptomyces tendae strain 139 plasmid unnamed1, complete sequence	123598-123629	7	0.781
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	MN871440	UNVERIFIED: Aeromonas phage AsFcp_1, complete genome	89142-89173	7	0.781
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	AY266303	Bacteriophage Aeh1, complete genome	181935-181966	7	0.781
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	NC_023688	Aeromonas phage PX29, complete genome	169349-169380	7	0.781
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	NC_005260	Aeromonas phage Aeh1, complete genome	181935-181966	7	0.781
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	MH791407	UNVERIFIED: Aeromonas phage AsFcp_4, partial genome	74572-74603	7	0.781
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	MH791401	UNVERIFIED: Aeromonas phage AsFcp_2, complete genome	119737-119768	7	0.781
NC_011365_2	2.28\|461847\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461847-461878	32	MT711978	Streptomyces phage Endor1, complete genome	22845-22876	7	0.781
NC_011365_2	2.28\|461847\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461847-461878	32	KT186229	Streptomyces phage Verse, complete genome	23229-23260	7	0.781
NC_011365_2	2.28\|461847\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461847-461878	32	KT186228	Streptomyces phage Amela, complete genome	23235-23266	7	0.781
NC_011365_3	3.5\|1815088\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815088-1815121	34	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1403700-1403733	7	0.794
NC_011365_3	3.5\|1815088\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815088-1815121	34	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1153201-1153234	7	0.794
NC_011365_3	3.5\|1815088\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815088-1815121	34	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1403846-1403879	7	0.794
NC_011365_3	3.37\|1817205\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817205-1817238	34	MT778839	Rhizobium phage P9VFCI, complete genome	44234-44267	7	0.794
NC_011365_3	3.37\|1817205\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817205-1817238	34	MN549360	Rhizobium phage RL38J1, complete genome	118919-118952	7	0.794
NC_011365_3	3.37\|1817205\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817205-1817238	34	MN549361	Rhizobium phage RL2RES, complete genome	76575-76608	7	0.794
NC_011365_3	3.37\|1817205\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817205-1817238	34	NC_025429	Rhizobium phage vB_RleM_P10VF, complete genome	128157-128190	7	0.794
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	784223-784255	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1562446-1562478	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1359259-1359291	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1313587-1313619	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1562576-1562608	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1313568-1313600	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1058682-1058714	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1313594-1313626	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1562141-1562173	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1562084-1562116	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1240253-1240285	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1049696-1049728	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1186744-1186776	7	0.788
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	435252-435284	7	0.788
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NC_023282	Streptomyces sp. FR1 plasmid pFRL2, complete sequence	50296-50329	7	0.794
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP033873	Caulobacter sp. FWC26 plasmid p1, complete sequence	52099-52132	7	0.794
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	KP027201	Mycobacterium phage Sbash, complete genome	15699-15732	7	0.794
NC_011365_1	1.2\|388405\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388405-388434	30	NZ_CP016462	Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence	53163-53192	8	0.733
NC_011365_1	1.2\|388405\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388405-388434	30	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	575418-575447	8	0.733
NC_011365_1	1.2\|388405\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388405-388434	30	MN813676	Arthrobacter phage Adolin, complete genome	3752-3781	8	0.733
NC_011365_1	1.2\|388405\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388405-388434	30	MH834610	Arthrobacter phage DrManhattan, complete genome	3751-3780	8	0.733
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_CP040819	Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence	116726-116757	8	0.75
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	MN693269	Marine virus AFVG_25M487, complete genome	43062-43093	8	0.75
NC_011365_2	2.2\|460262\|31\|NC_011365\|CRISPRCasFinder,CRT	460262-460292	31	NZ_CP041349	Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence	193166-193196	8	0.742
NC_011365_2	2.2\|460262\|31\|NC_011365\|CRISPRCasFinder,CRT	460262-460292	31	NZ_CP021468	Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1	131425-131455	8	0.742
NC_011365_2	2.2\|460262\|31\|NC_011365\|CRISPRCasFinder,CRT	460262-460292	31	NZ_CP004365	Komagataeibacter xylinus E25 plasmid pGX5, complete sequence	211889-211919	8	0.742
NC_011365_2	2.2\|460262\|31\|NC_011365\|CRISPRCasFinder,CRT	460262-460292	31	NC_016037	Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence	55455-55485	8	0.742
NC_011365_2	2.2\|460262\|31\|NC_011365\|CRISPRCasFinder,CRT	460262-460292	31	NZ_CP050140	Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS1, complete sequence	3473-3503	8	0.742
NC_011365_2	2.3\|460322\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460322-460353	32	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	333044-333075	8	0.75
NC_011365_2	2.5\|460444\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460444-460475	32	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	333044-333075	8	0.75
NC_011365_2	2.13\|460932\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460932-460963	32	MF042360	Pseudomonas phage Phabio, complete genome	28063-28094	8	0.75
NC_011365_2	2.14\|460993\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460993-461024	32	MN369765	Microbacterium phage Zanella, complete genome	27791-27822	8	0.75
NC_011365_2	2.14\|460993\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460993-461024	32	NZ_CP006369	Aureimonas sp. AU20 plasmid pAU20b, complete sequence	305286-305317	8	0.75
NC_011365_2	2.15\|461054\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461054-461085	32	NZ_LR594690	Variovorax sp. WDL1 plasmid 2	589046-589077	8	0.75
NC_011365_2	2.15\|461054\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461054-461085	32	NZ_LR594691	Variovorax sp. WDL1 plasmid 3	194585-194616	8	0.75
NC_011365_2	2.15\|461054\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461054-461085	32	NZ_CP012477	Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence	636644-636675	8	0.75
NC_011365_2	2.15\|461054\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461054-461085	32	NZ_CP016082	Streptomyces sp. SAT1 plasmid unnamed2, complete sequence	238929-238960	8	0.75
NC_011365_2	2.15\|461054\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461054-461085	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1423768-1423799	8	0.75
NC_011365_2	2.15\|461054\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461054-461085	32	MG945283	UNVERIFIED: Microviridae sp. isolate 11472-1602, complete genome	3932-3963	8	0.75
NC_011365_2	2.17\|461176\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461176-461207	32	NC_029005	Streptomyces phage phiSAJS1, complete genome	2890-2921	8	0.75
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1674287-1674318	8	0.75
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	138974-139005	8	0.75
NC_011365_2	2.19\|461298\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461298-461329	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	1024594-1024625	8	0.75
NC_011365_2	2.19\|461298\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461298-461329	32	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1049996-1050027	8	0.75
NC_011365_2	2.19\|461298\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461298-461329	32	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1082379-1082410	8	0.75
NC_011365_2	2.22\|461481\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461481-461512	32	NZ_CP019949	Methylocystis bryophila strain S285 plasmid p1, complete sequence	85325-85356	8	0.75
NC_011365_2	2.22\|461481\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461481-461512	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	1785257-1785288	8	0.75
NC_011365_2	2.23\|461542\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461542-461573	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	766507-766538	8	0.75
NC_011365_3	3.18\|1815949\|35\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815949-1815983	35	NZ_CP032341	Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence	102613-102647	8	0.771
NC_011365_3	3.18\|1815949\|35\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815949-1815983	35	NZ_CP012916	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence	137426-137460	8	0.771
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	805806-805839	8	0.765
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP013525	Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence	325209-325242	8	0.765
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP040763	Paracoccus sp. 2251 plasmid unnamed4, complete sequence	159829-159862	8	0.765
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP010860	Marinovum algicola DG 898 plasmid pMaD5, complete sequence	29851-29884	8	0.765
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	MN908694	Microbacterium phage RubyRalph, complete genome	41616-41649	8	0.765
NC_011365_3	3.42\|1817538\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817538-1817570	33	NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	418209-418241	8	0.758
NC_011365_3	3.42\|1817538\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817538-1817570	33	NZ_CP020948	Rhizobium sp. CIAT894 plasmid pRheCIAT894a, complete sequence	50329-50361	8	0.758
NC_011365_3	3.42\|1817538\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817538-1817570	33	NZ_CP048283	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence	50396-50428	8	0.758
NC_011365_3	3.42\|1817538\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817538-1817570	33	NZ_CP053207	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence	434983-435015	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1214206-1214238	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1263135-1263167	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1132570-1132602	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1192290-1192322	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1131667-1131699	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1165867-1165899	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1165856-1165888	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1132562-1132594	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1131918-1131950	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1132553-1132585	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1214321-1214353	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1214305-1214337	8	0.758
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1214298-1214330	8	0.758
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	696861-696894	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	707327-707360	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP019585	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence	741941-741974	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	8532-8565	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP022194	Yangia pacifica strain YSBP01 plasmid unnamed4, complete sequence	23427-23460	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NC_017324	Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence	1120522-1120555	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP009145	Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence	890566-890599	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP021827	Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence	808848-808881	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP021830	Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence	287365-287398	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP021824	Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence	771596-771629	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	991766-991799	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	585305-585338	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	554527-554560	8	0.765
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	706994-707027	8	0.765
NC_011365_1	1.2\|388405\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388405-388434	30	NZ_CP032327	Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence	114924-114953	9	0.7
NC_011365_1	1.2\|388405\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388405-388434	30	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	336707-336736	9	0.7
NC_011365_1	1.2\|388405\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388405-388434	30	NZ_CP007798	Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence	96087-96116	9	0.7
NC_011365_1	1.2\|388405\|30\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	388405-388434	30	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	200304-200333	9	0.7
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	MT658803	Mycobacterium phage Reindeer, complete genome	44865-44896	9	0.719
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_CP015522	Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence	12000-12031	9	0.719
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_CP045330	Labrenzia sp. THAF191b plasmid pTHAF191b_b, complete sequence	5414-5445	9	0.719
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_CP045346	Labrenzia sp. THAF187b plasmid pTHAF187b_b, complete sequence	5414-5445	9	0.719
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_CP045334	Labrenzia sp. THAF191a plasmid pTHAF191a_a, complete sequence	77956-77987	9	0.719
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_CP045382	Labrenzia sp. THAF35 plasmid pTHAF35_b, complete sequence	57705-57736	9	0.719
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_CP045382	Labrenzia sp. THAF35 plasmid pTHAF35_b, complete sequence	134036-134067	9	0.719
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	597330-597361	9	0.719
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_CP020372	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence	351664-351695	9	0.719
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NC_017805	Deinococcus gobiensis I-0 plasmid P1, complete sequence	8069-8100	9	0.719
NC_011365_2	2.2\|460262\|31\|NC_011365\|CRISPRCasFinder,CRT	460262-460292	31	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	340882-340912	9	0.71
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	KX855962	Arthrobacter phage HumptyDumpty, complete genome	45812-45843	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	MF185721	Arthrobacter phage Kabreeze, complete genome	45891-45922	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	KX522650	Arthrobacter Phage Conboy, complete genome	45712-45743	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	MN204503	Arthrobacter phage Linus, complete genome	46014-46045	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	MF185723	Arthrobacter phage RosiePosie, complete genome	45703-45734	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	KX670787	Arthrobacter phage Chocolat, complete genome	45873-45904	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	MF668274	Arthrobacter phage JayCookie, complete genome	46437-46468	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	MK494107	Arthrobacter phage Chipper1996, complete genome	45848-45879	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	MF185724	Arthrobacter phage Scavito, complete genome	45978-46009	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	KX670786	Arthrobacter phage Chubster, complete genome	46025-46056	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	MN204499	Arthrobacter phage Mordred, complete genome	45929-45960	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	MF185725	Arthrobacter phage Tophat, complete genome	45849-45880	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	KU160660	Arthrobacter phage PrincessTrina, complete genome	45916-45947	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	KX855961	Arthrobacter phage EdgarPoe, complete genome	45712-45743	9	0.719
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	115477-115508	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	KX855962	Arthrobacter phage HumptyDumpty, complete genome	45812-45843	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	MF185721	Arthrobacter phage Kabreeze, complete genome	45891-45922	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	KX522650	Arthrobacter Phage Conboy, complete genome	45712-45743	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	MN204503	Arthrobacter phage Linus, complete genome	46014-46045	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	MF185723	Arthrobacter phage RosiePosie, complete genome	45703-45734	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	KX670787	Arthrobacter phage Chocolat, complete genome	45873-45904	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	MF668274	Arthrobacter phage JayCookie, complete genome	46437-46468	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	MK494107	Arthrobacter phage Chipper1996, complete genome	45848-45879	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	MF185724	Arthrobacter phage Scavito, complete genome	45978-46009	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	KX670786	Arthrobacter phage Chubster, complete genome	46025-46056	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	MN204499	Arthrobacter phage Mordred, complete genome	45929-45960	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	MF185725	Arthrobacter phage Tophat, complete genome	45849-45880	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	KU160660	Arthrobacter phage PrincessTrina, complete genome	45916-45947	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	KX855961	Arthrobacter phage EdgarPoe, complete genome	45712-45743	9	0.719
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	115477-115508	9	0.719
NC_011365_2	2.10\|460749\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460749-460780	32	JQ807243	Environmental Halophage eHP-23, partial genome	14664-14695	9	0.719
NC_011365_2	2.14\|460993\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460993-461024	32	NC_048876	Gordonia phage Secretariat, complete genome	43026-43057	9	0.719
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	AP021850	Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome	305707-305738	9	0.719
NC_011365_2	2.19\|461298\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461298-461329	32	NZ_LR594664	Variovorax sp. RA8 plasmid 3	370076-370107	9	0.719
NC_011365_2	2.22\|461481\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461481-461512	32	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	56462-56493	9	0.719
NC_011365_2	2.22\|461481\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461481-461512	32	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	170433-170464	9	0.719
NC_011365_2	2.22\|461481\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461481-461512	32	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	10106-10137	9	0.719
NC_011365_2	2.22\|461481\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461481-461512	32	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	411242-411273	9	0.719
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	NC_007763	Rhizobium etli CFN 42 plasmid p42b, complete sequence	89415-89446	9	0.719
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	NZ_CP020907	Rhizobium etli strain NXC12 plasmid pRetNXC12a, complete sequence	88538-88569	9	0.719
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	NC_021906	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1a, complete sequence	87448-87479	9	0.719
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	NZ_AP014688	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence	36115-36146	9	0.719
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	KX669658	Ochrobactrum phage POA1180, complete genome	35930-35961	9	0.719
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	621575-621606	9	0.719
NC_011365_2	2.28\|461847\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461847-461878	32	NC_015951	Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence	117238-117269	9	0.719
NC_011365_2	2.28\|461847\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461847-461878	32	NZ_CP019036	Massilia putida strain 6NM-7 plasmid unnamed1, complete sequence	31692-31723	9	0.719
NC_011365_2	2.28\|461847\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461847-461878	32	NZ_CP015094	Pelagibaca abyssi strain JLT2014 plasmid pPABY6, complete sequence	45029-45060	9	0.719
NC_011365_2	2.28\|461847\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461847-461878	32	NZ_CP006727	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence	22592-22623	9	0.719
NC_011365_3	3.2\|1814891\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1814891-1814924	34	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	1105920-1105953	9	0.735
NC_011365_3	3.5\|1815088\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815088-1815121	34	KY000037	Agrobacterium sp. strain LBA4404 plasmid pTi_LBA4404, complete sequence	39884-39917	9	0.735
NC_011365_3	3.5\|1815088\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815088-1815121	34	NZ_CP011249	Agrobacterium tumefaciens strain Ach5 plasmid pTi, complete sequence	121658-121691	9	0.735
NC_011365_3	3.5\|1815088\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815088-1815121	34	NC_002377	Agrobacterium tumefaciens plasmid Ti, complete sequence	121651-121684	9	0.735
NC_011365_3	3.5\|1815088\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815088-1815121	34	NZ_CP032920	Agrobacterium tumefaciens strain 15955 plasmid pTi15955, complete sequence	14340-14373	9	0.735
NC_011365_3	3.5\|1815088\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815088-1815121	34	NZ_CP033030	Agrobacterium tumefaciens strain A6 plasmid pTiA6, complete sequence	14340-14373	9	0.735
NC_011365_3	3.5\|1815088\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815088-1815121	34	NZ_KY000030	Agrobacterium genomosp. 1 strain CFBP5767 plasmid pTi_CFBP5767, complete sequence	87850-87883	9	0.735
NC_011365_3	3.5\|1815088\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815088-1815121	34	NZ_CP026927	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609a, complete sequence	225744-225777	9	0.735
NC_011365_3	3.5\|1815088\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815088-1815121	34	NZ_KY000061	Agrobacterium tumefaciens strain CFBP2413 plasmid pTi_CFBP2413, complete sequence	40831-40864	9	0.735
NC_011365_3	3.8\|1815286\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815286-1815319	34	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	348329-348362	9	0.735
NC_011365_3	3.9\|1815352\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815352-1815385	34	NZ_CP024428	Paracoccus yeei strain TT13 plasmid pTT13-6, complete sequence	8006-8039	9	0.735
NC_011365_3	3.9\|1815352\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815352-1815385	34	NZ_CP029776	Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed2, complete sequence	172247-172280	9	0.735
NC_011365_3	3.9\|1815352\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815352-1815385	34	KX641266	Mycobacterium phage Terror, complete genome	27608-27641	9	0.735
NC_011365_3	3.9\|1815352\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815352-1815385	34	KX641265	Mycobacterium phage Taheera, complete genome	27608-27641	9	0.735
NC_011365_3	3.10\|1815418\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815418-1815451	34	AP014203	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C76-MedDCM-OCT-S35-C25, * SEQUENCING IN PROGRESS *	3596-3629	9	0.735
NC_011365_3	3.10\|1815418\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815418-1815451	34	AP014204	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C76-MedDCM-OCT-S42-C31, * SEQUENCING IN PROGRESS *	779-812	9	0.735
NC_011365_3	3.18\|1815949\|35\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815949-1815983	35	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	269273-269307	9	0.743
NC_011365_3	3.18\|1815949\|35\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815949-1815983	35	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	878744-878778	9	0.743
NC_011365_3	3.22\|1816215\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816215-1816248	34	NZ_CP007510	Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid	79662-79695	9	0.735
NC_011365_3	3.30\|1816742\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816742-1816775	34	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	447538-447571	9	0.735
NC_011365_3	3.30\|1816742\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816742-1816775	34	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	447514-447547	9	0.735
NC_011365_3	3.30\|1816742\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816742-1816775	34	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	461935-461968	9	0.735
NC_011365_3	3.30\|1816742\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816742-1816775	34	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	447514-447547	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	732773-732806	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	724313-724346	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	627958-627991	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	693719-693752	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	627073-627106	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	626217-626250	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	626207-626240	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	627946-627979	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	627964-627997	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	627943-627976	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	732837-732870	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	732837-732870	9	0.735
NC_011365_3	3.34\|1817007\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817007-1817040	34	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	732823-732856	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1535746-1535779	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1535715-1535748	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1259199-1259232	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	583711-583744	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1535744-1535777	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	929111-929144	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	929066-929099	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1443185-1443218	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1247635-1247668	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1388445-1388478	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1254731-1254764	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	389679-389712	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1836846-1836879	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_LR134451	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence	336530-336563	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	373719-373752	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NC_015179	Acidiphilium multivorum AIU301 plasmid pACMV3, complete sequence	9739-9772	9	0.735
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP045327	Mycobacterium sp. THAF192 plasmid pTHAF192_b, complete sequence	64403-64436	9	0.735
NC_011365_3	3.37\|1817205\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817205-1817238	34	LR745207	uncultured phage genome assembly, chromosome: 1	224522-224555	9	0.735
NC_011365_3	3.42\|1817538\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817538-1817570	33	NC_023600	Mycobacterium phage Jolie1, complete genome	3022-3054	9	0.727
NC_011365_3	3.42\|1817538\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817538-1817570	33	KJ433975	Mycobacterium phage 40BC, complete genome	3022-3054	9	0.727
NC_011365_3	3.42\|1817538\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817538-1817570	33	KJ433973	Mycobacterium phage 39HC, complete genome	3022-3054	9	0.727
NC_011365_3	3.42\|1817538\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817538-1817570	33	NC_024145	Mycobacterium phage Hosp, complete genome	1224-1256	9	0.727
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	347420-347452	9	0.727
NC_011365_3	3.43\|1817603\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817603-1817635	33	JF937105	Mycobacterium phage Rey, complete genome	746-778	9	0.727
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	392327-392360	9	0.735
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1826398-1826431	9	0.735
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	501235-501268	9	0.735
NC_011365_4	4.11\|1820047\|34\|NC_011365\|CRISPRCasFinder,CRT	1820047-1820080	34	NZ_CP042825	Rhizobium sp. WL3 plasmid unnamed2, complete sequence	684607-684640	9	0.735
NC_011365_2	2.1\|460201\|32\|NC_011365\|CRISPRCasFinder,CRT	460201-460232	32	NZ_CP045120	Rubrobacter sp. SCSIO 52909 plasmid unnamed1, complete sequence	138401-138432	10	0.688
NC_011365_2	2.4\|460383\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460383-460414	32	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	386540-386571	10	0.688
NC_011365_2	2.6\|460505\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460505-460536	32	NZ_CP054029	Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence	386540-386571	10	0.688
NC_011365_2	2.14\|460993\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	460993-461024	32	NZ_CP021083	Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence	230048-230079	10	0.688
NC_011365_2	2.18\|461237\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461237-461268	32	NZ_CP046906	Streptomyces sp. QHH-9511 plasmid unnamed, complete sequence	77500-77531	10	0.688
NC_011365_2	2.24\|461603\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461603-461634	32	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	114043-114074	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MH697582	Mycobacterium phage Ejimix, complete genome	17237-17268	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MH697583	Mycobacterium phage EricMillard, complete genome	16773-16804	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MH727551	Mycobacterium phage Kalah2, complete genome	17088-17119	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MF919504	Mycobacterium phage DmpstrDiver, complete genome	16663-16694	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MH399772	Mycobacterium phage Constella, complete genome	15310-15341	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MH077579	Mycobacterium phage Halley, complete genome	16486-16517	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	JF937090	Mycobacterium virus BAKA, complete genome	16132-16163	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MH669017	Mycobacterium phage Zelink, complete genome	16651-16682	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MN062701	Mycobacterium phage Dallas, complete genome	16027-16058	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MK524527	Mycobacterium phage ThreeRngTarjay, complete genome	16623-16654	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MK279849	Mycobacterium phage Duke13, complete genome	16061-16092	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MN183286	Mycobacteriophage Yeet, complete genome	15799-15830	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MK524529	Mycobacterium phage Phoebus, complete genome	16773-16804	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MF919512	Mycobacterium phage Klein, complete genome	16066-16097	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	NC_026584	Mycobacterium phage Minerva, complete genome	16551-16582	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	NC_022067	Mycobacterium phage Wanda, complete genome	16066-16097	10	0.688
NC_011365_2	2.26\|461725\|32\|NC_011365\|CRISPRCasFinder,CRT,PILER-CR	461725-461756	32	MK967379	Mycobacterium phage HokkenD, complete genome	16056-16087	10	0.688
NC_011365_3	3.8\|1815286\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815286-1815319	34	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2009697-2009730	10	0.706
NC_011365_3	3.9\|1815352\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815352-1815385	34	NC_008703	Mycobacterium sp. KMS plasmid pMKMS01, complete sequence	203945-203978	10	0.706
NC_011365_3	3.9\|1815352\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815352-1815385	34	NC_009339	Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence	46955-46988	10	0.706
NC_011365_3	3.19\|1816016\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816016-1816049	34	X80164	Bacteriophage phi-H dcm4, dcm5a and dcm5b genes for cytosine methylase	4142-4175	10	0.706
NC_011365_3	3.19\|1816016\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816016-1816049	34	MK002701	Halobacterium phage phiH variant phiH1, complete genome	46084-46117	10	0.706
NC_011365_3	3.22\|1816215\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816215-1816248	34	NZ_CP017148	Bosea vaviloviae strain Vaf18 plasmid unnamed1, complete sequence	208757-208790	10	0.706
NC_011365_3	3.32\|1816874\|35\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816874-1816908	35	NZ_CP017300	Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence	117891-117925	10	0.714
NC_011365_3	3.32\|1816874\|35\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816874-1816908	35	NZ_CP034154	Rhodococcus sp. NJ-530 plasmid unnamed2, complete sequence	160699-160733	10	0.714
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1453260-1453293	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1508602-1508635	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP022762	Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence	1375703-1375736	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP023017	Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence	1437921-1437954	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP014703	Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence	1374725-1374758	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP022760	Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence	1419284-1419317	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP022789	Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence	1419275-1419308	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP022771	Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence	1375695-1375728	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP022777	Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence	1375048-1375081	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP022799	Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence	1375686-1375719	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1453408-1453441	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1453389-1453422	10	0.706
NC_011365_3	3.35\|1817073\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817073-1817106	34	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1453374-1453407	10	0.706
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP042821	Octadecabacter sp. SW4 plasmid pow42, complete sequence	20295-20328	10	0.706
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP010421	Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence	188693-188726	10	0.706
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	NZ_CP010728	Phaeobacter inhibens strain P88 plasmid pP88_c, complete sequence	29134-29167	10	0.706
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	MN586029	Mycobacterium phage Hannaconda, complete genome	17716-17749	10	0.706
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	MK524521	Mycobacterium phage Schatzie, complete genome	20386-20419	10	0.706
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	MF133445	Mycobacterium phage Lucky2013, complete genome	19164-19197	10	0.706
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	JF937101	Mycobacterium virus LittleE, complete genome	20421-20454	10	0.706
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	MN183286	Mycobacteriophage Yeet, complete genome	20388-20421	10	0.706
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	KM400683	Mycobacterium phage Ariel, complete genome	18634-18667	10	0.706
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	MK524504	Mycobacterium phage Hughesyang, complete genome	21257-21290	10	0.706
NC_011365_4	4.10\|1819981\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1819981-1820014	34	MF668284	Mycobacterium phage Squint, complete genome	18982-19015	10	0.706
NC_011365_3	3.18\|1815949\|35\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815949-1815983	35	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	1255858-1255892	11	0.686
NC_011365_3	3.18\|1815949\|35\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815949-1815983	35	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	41413-41447	11	0.686
NC_011365_3	3.18\|1815949\|35\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1815949-1815983	35	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5586941-5586975	11	0.686
NC_011365_3	3.44\|1817668\|34\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1817668-1817701	34	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	960916-960949	11	0.676

1. spacer 2.2|460262|31|NC_011365|CRISPRCasFinder,CRT matches to NZ_AP018516 (Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence) position: , mismatch: 2, identity: 0.935

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttcccctgctcggcaacccgaaactcaagat	Protospacer
*.***************** ***********

2. spacer 2.2|460262|31|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP043508 (Acetobacter sp. KACC 21233 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.935

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
tccccctgctgggcaatcccaaactcaagat	Protospacer
********** *****.**************

3. spacer 2.27|461786|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022700 (Acetobacter tropicalis strain BDGP1 plasmid pAtBDGP1A, complete sequence) position: , mismatch: 2, identity: 0.938

aacgtggaatggcaccagatcgaaacgatgct	CRISPR spacer
aacgtgggctggcaccagatcgaaacgatgct	Protospacer
*******. ***********************

4. spacer 3.44|1817668|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to LC155907 (Achromobacter xylosoxidans plasmid pKUN4507_2 DNA, complete sequence, strain: KUN4507) position: , mismatch: 2, identity: 0.941

cgcactggtcgaggcttacggcaagctctccaag	CRISPR spacer
cgcgctggtcgaggcttacggcaagctctcgaag	Protospacer
***.************************** ***

5. spacer 3.44|1817668|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF344578 (Pseudomonas aeruginosa strain 60512 plasmid p60512-IMP, complete sequence) position: , mismatch: 2, identity: 0.941

cgcactggtcgaggcttacggcaagctctccaag	CRISPR spacer
cgcgctggtcgaggcttacggcaagctctcgaag	Protospacer
***.************************** ***

6. spacer 3.44|1817668|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_022242 (Achromobacter xylosoxidans subsp. denitrificans pAX22 plasmid, complete sequence) position: , mismatch: 2, identity: 0.941

cgcactggtcgaggcttacggcaagctctccaag	CRISPR spacer
cgcgctggtcgaggcttacggcaagctctcgaag	Protospacer
***.************************** ***

7. spacer 3.44|1817668|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026223 (Aeromonas sp. ASNIH3 plasmid pAER-3367, complete sequence) position: , mismatch: 2, identity: 0.941

cgcactggtcgaggcttacggcaagctctccaag	CRISPR spacer
cgcgctggtcgaggcttacggcaagctctcgaag	Protospacer
***.************************** ***

8. spacer 2.14|460993|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_030907 (Gordonia phage GMA5, complete genome) position: , mismatch: 5, identity: 0.844

cgctcgaccagatcgcgcacaccctcggcaac	CRISPR spacer
cgctcgtccagatcgcgcagaccctcggtccc	Protospacer
****** ************ ********.  *

9. spacer 2.22|461481|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_020205 (Xanthomonas citri phage CP2 DNA, complete genome) position: , mismatch: 5, identity: 0.844

-acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
tacgtgc-cgcgcgtggtgtccacgttcctgcg	Protospacer
 **** * ******** **************

10. spacer 1.2|388405|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_013449 (Streptomyces sp. W9 plasmid pCQ3, complete sequence) position: , mismatch: 6, identity: 0.8

aggggagcgcgtcaccttcgacaagggcct	CRISPR spacer
cggcccccgcgtcacctccgacaagggcct	Protospacer
 **    **********.************

11. spacer 1.2|388405|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_019307 (Streptomyces sp. W75 plasmid pCQ4, complete sequence) position: , mismatch: 6, identity: 0.8

aggggagcgcgtcaccttcgacaagggcct	CRISPR spacer
cggcccccgcgtcacctccgacaagggcct	Protospacer
 **    **********.************

12. spacer 1.3|388471|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 6, identity: 0.8

cctcgttgctcgcgcgcgggt---gcagggctg	CRISPR spacer
cctcgttgcacgcgcgcgggtcgcgcggga---	Protospacer
********* ***********   **.**.

13. spacer 1.4|388537|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 6, identity: 0.8

tccgcacgttcacgcgtaccagcatcgcgg	CRISPR spacer
ccggcacgttcacgcgtgccagcagcgcac	Protospacer
.* **************.****** ***.

14. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NC_023285 (Streptomyces sp. F8 plasmid pFRL5, complete sequence) position: , mismatch: 6, identity: 0.812

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
acctcgacctcgtccaggatcaccagcccctc	Protospacer
*   **.******************* ****

15. spacer 2.15|461054|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015530 (Rhodococcus sp. WB1 plasmid pWB1, complete sequence) position: , mismatch: 6, identity: 0.812

gtgctggaggtgatggcggccaatcgccgcac	CRISPR spacer
gtgctggaagtgatggcggccaattccggtgc	Protospacer
********.***************. * *..*

16. spacer 2.28|461847|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MN585195 (Pseudomonas phage AUS531phi, complete genome) position: , mismatch: 6, identity: 0.812

gcgaagacctgcgcctggagcgcctgcttgtg	CRISPR spacer
gcatcgacctgcgcctgcagcgcctgcgtgta	Protospacer
**.  ************ ********* ***.

17. spacer 3.22|1816215|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 6, identity: 0.824

tgcg-cacgctggccatcggcgcgtcctggtataa	CRISPR spacer
-gcgtcgcgctggccatcggcgcgacctgggatcc	Protospacer
 *** *.***************** ***** **

18. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.824

gccgca-agcgcgaaaacatggaccagatcaaggc	CRISPR spacer
-ctgcacaggccgaaaacatgtaccagatcatggc	Protospacer
 *.*** **  ********** ********* ***

19. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 6, identity: 0.824

ccgaggtccagcagcgcctgctcg---gcgtcgtcca	CRISPR spacer
cccaggtccagcagcgcctgcccgtacgcgacgt---	Protospacer
** ******************.**   *** ***

20. spacer 3.37|1817205|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MT778837 (Rhizobium phage AF3, complete genome) position: , mismatch: 6, identity: 0.824

cgcctttggatgcgaactcgtcggcgatcaggcg	CRISPR spacer
cgagcttggatgcgaactcgtcgacgatcagaag	Protospacer
**  .******************.*******. *

21. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 6, identity: 0.824

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-cggatggcgacgacgcccaggcggccgatgccga	Protospacer
 **.*..* **.*********** ***********

22. spacer 1.1|388339|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042500 (Enterobacter sp. E76 plasmid pE76_001, complete sequence) position: , mismatch: 7, identity: 0.767

tcagccggctgggcattgccctacgagagg	CRISPR spacer
ccatcccgctgggcattgccctactggcgc	Protospacer
.** ** ***************** .* *

23. spacer 1.1|388339|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_008195 (Mycobacterium phage Cooper, complete genome) position: , mismatch: 7, identity: 0.767

tcagccggctgggcattgccctacgagagg	CRISPR spacer
ccagccgcctgggcattgccctcgggcacg	Protospacer
.****** **************  *. * *

24. spacer 1.2|388405|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_019387 (Thermus oshimai JL-2 plasmid pTHEOS01, complete sequence) position: , mismatch: 7, identity: 0.767

aggggagcgcgtcaccttcgacaagggcct	CRISPR spacer
ctacgagcgcgttacctttgacaagggccg	Protospacer
  . ********.*****.**********

25. spacer 1.3|388471|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134446 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.767

cctcgttgctcgcgcgcgggtgcagggctg	CRISPR spacer
tgtcgttgctcgagcgcgggcgcagggtgc	Protospacer
. ********** *******.******.

26. spacer 1.3|388471|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MN234216 (Streptomyces phage Gilgamesh, complete genome) position: , mismatch: 7, identity: 0.767

cctcgttgctcgcgcgcgggtgcagggctg	CRISPR spacer
tgcccttgctgtcgcgcgggtgcagggcag	Protospacer
. .* *****  **************** *

27. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NC_006462 (Thermus thermophilus HB8 plasmid pTT27, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

28. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NC_017273 (Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

29. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP014142 (Thermus parvatiensis strain RL plasmid pTP143, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

30. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NC_005838 (Thermus thermophilus HB27 plasmid pTT27, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

31. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_AP019802 (Thermus thermophilus strain HC11 plasmid pHC11, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

32. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NC_017588 (Thermus thermophilus JL-18 plasmid pTTJL1801, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

33. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP016313 (Thermus brockianus strain GE-1 plasmid pTB1, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggatcacgaggtcgta	Protospacer
 ***.****************** **..* *.

34. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_AP019795 (Thermus thermophilus strain AA2-29 plasmid pAA229, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

35. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_LR027520 (Thermus thermophilus isolate TTHNAR1 plasmid 4, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

36. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_AP019793 (Thermus thermophilus strain AA2-20 plasmid pAA220, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
taggtggcctcgtccaggaccaccaggtcgta	Protospacer
 ***.**************.******..* *.

37. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 7, identity: 0.781

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
tcggtggcctcgtccaggatcagcaggcgcgg	Protospacer
  **.***************** ***.* * *

38. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT591906 (Neisseria gonorrhoeae strain WHO M plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

39. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT591899 (Neisseria gonorrhoeae strain WHO G plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

40. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT592164 (Neisseria gonorrhoeae strain WHO_W plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

41. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043813 (Neisseria gonorrhoeae strain NG290 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

42. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018378 (Neisseria gonorrhoeae strain FC428 plasmid pConjugative, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

43. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043872 (Neisseria gonorrhoeae strain NG196 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

44. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043817 (Neisseria gonorrhoeae strain NG251 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

45. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to CP002441 (Neisseria gonorrhoeae TCDC-NG08107 plasmid pNGTCDC08107, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

46. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_014105 (Neisseria gonorrhoeae plasmid pEP5289, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

47. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT592148 (Neisseria gonorrhoeae strain WHO O plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

48. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT591912 (Neisseria gonorrhoeae strain WHO N plasmid 3, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

49. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP019854 (Neisseria gonorrhoeae strain SS3160 plasmid pConjugative, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

50. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT591902 (Neisseria gonorrhoeae strain WHO L plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

51. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045833 (Neisseria gonorrhoeae strain AUSMDU00010541 plasmid pAUSMDU00010541_01, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

52. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020416 (Neisseria gonorrhoeae strain FDAARGOS_205 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

53. spacer 2.12|460871|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034033 (Neisseria gonorrhoeae strain FQ01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gccgtcgct--ctcaaatcgcggaattgcagcgc	CRISPR spacer
--agatgctggctcaaatcgccgaagtgcagcgc	Protospacer
   * .***  ********** *** ********

54. spacer 2.14|460993|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023721 (Rhodococcus sp. H-CA8f plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

cgctcgaccagatcgcgcacaccctcggcaac	CRISPR spacer
gtcgcgacgagatcgcgcacaccctcgcccgc	Protospacer
  * **** ****************** * .*

55. spacer 2.14|460993|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.781

cgctcgaccagatcgcgcacaccctcggcaac	CRISPR spacer
cgctcgaccagttcgggcacaccaccgacggc	Protospacer
*********** *** ******* .**.*..*

56. spacer 2.15|461054|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP038031 (Rhodococcus ruber strain R1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gtgctggaggtgatggcggccaatcgccgcac	CRISPR spacer
gtgctggaagtgatggcagccaattccggagc	Protospacer
********.********.******. * * .*

57. spacer 2.15|461054|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

gtgctggaggtgatggcggccaatcgccgcac-	CRISPR spacer
gtgctggaggtgcgggcggccaa-cgccaagga	Protospacer
************  ********* ****. .

58. spacer 2.15|461054|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 7, identity: 0.781

gtgctggaggtgatggcggccaatcgccgcac-	CRISPR spacer
gtgctggaggtgcgggcggccaa-cgccaagga	Protospacer
************  ********* ****. .

59. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134461 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
accgcgccccacagcaccgcccagccgaggac	Protospacer
. **.. ***.****************.****

60. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029453 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509a, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac--	CRISPR spacer
ggcgttgcccgcagcaccgtccag--gataacct	Protospacer
***** *************.****  *. .**

61. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
ggcaacacccgcatcaccgcccagccggagaa	Protospacer
***.  .****** **************.**

62. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac--	CRISPR spacer
ggcgttgcccgcagcaccgtccag--gataacct	Protospacer
***** *************.****  *. .**

63. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac--	CRISPR spacer
ggcgttgcccgcagcaccgtccag--gataacct	Protospacer
***** *************.****  *. .**

64. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
gccgcggccagcatcaccgcccagccggggct	Protospacer
* **..*** *** **************** .

65. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023069 (Ensifer sojae CCBAU 05684 plasmid pSJ05684a, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac--	CRISPR spacer
ggcgttgcccgcagcaccgtccag--gataacct	Protospacer
***** *************.****  *. .**

66. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029233 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436a, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgtagcccgcagcaccgcccagccggggac--	CRISPR spacer
ggcgttgcccgcagcaccgtccag--gataacct	Protospacer
***** *************.****  *. .**

67. spacer 2.20|461359|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.781

cccgacgaagtgatggcctgactgtctacggc--	CRISPR spacer
gccgacgaactgatggcctggctg--cgcggctt	Protospacer
 ******** **********.***  ..****

68. spacer 2.23|461542|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043960 (Streptomyces tendae strain 139 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

agcgcggcgtggcgggaatcaaggt--cgtcggt	CRISPR spacer
tcggcggcgtggagggaatcaagttcacgtcg--	Protospacer
   ********* ********** *  *****

69. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MN871440 (UNVERIFIED: Aeromonas phage AsFcp_1, complete genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

70. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to AY266303 (Bacteriophage Aeh1, complete genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

71. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_023688 (Aeromonas phage PX29, complete genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

72. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_005260 (Aeromonas phage Aeh1, complete genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

73. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MH791407 (UNVERIFIED: Aeromonas phage AsFcp_4, partial genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

74. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MH791401 (UNVERIFIED: Aeromonas phage AsFcp_2, complete genome) position: , mismatch: 7, identity: 0.781

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
tctttcagttcagcggtgatgccgcgaacaac	Protospacer
 *. ** ****.*****************.*.

75. spacer 2.28|461847|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MT711978 (Streptomyces phage Endor1, complete genome) position: , mismatch: 7, identity: 0.781

gcgaagacctgcgcctggagcgcctgcttgtg-	CRISPR spacer
gcgaagacctccgccaggagcgcgt-cgagcgc	Protospacer
********** **** ******* * *  *.*

76. spacer 2.28|461847|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KT186229 (Streptomyces phage Verse, complete genome) position: , mismatch: 7, identity: 0.781

gcgaagacctgcgcctggagcgcctgcttgtg-	CRISPR spacer
gcgaagacctccgccaggagcgcgt-cgagcgc	Protospacer
********** **** ******* * *  *.*

77. spacer 2.28|461847|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KT186228 (Streptomyces phage Amela, complete genome) position: , mismatch: 7, identity: 0.781

gcgaagacctgcgcctggagcgcctgcttgtg-	CRISPR spacer
gcgaagacctccgccaggagcgcgt-cgagcgc	Protospacer
********** **** ******* * *  *.*

78. spacer 3.5|1815088|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

cggtcaggacgatgggcagatccgcagactgtcc	CRISPR spacer
cggtcagggcgaagggcagatccggcggctcgcc	Protospacer
********.*** ***********  *.**  **

79. spacer 3.5|1815088|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.794

cggtcaggacgatgggcagatccgcagactgtcc	CRISPR spacer
cggtcagggcgaagggcagatccggcggctcgcc	Protospacer
********.*** ***********  *.**  **

80. spacer 3.5|1815088|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.794

cggtcaggacgatgggcagatccgcagactgtcc	CRISPR spacer
cggtcagggcgaagggcagatccggcggctcgcc	Protospacer
********.*** ***********  *.**  **

81. spacer 3.37|1817205|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MT778839 (Rhizobium phage P9VFCI, complete genome) position: , mismatch: 7, identity: 0.794

cgcctttggatgcgaactcgtcggcgatcaggcg	CRISPR spacer
ccagcttggatgcgaactcgtcgacgatcagaag	Protospacer
*   .******************.*******. *

82. spacer 3.37|1817205|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MN549360 (Rhizobium phage RL38J1, complete genome) position: , mismatch: 7, identity: 0.794

cgcctttggatgcgaactcgtcggcgatcaggcg	CRISPR spacer
caagcttggatgcgaactcgtcgacgatcagaag	Protospacer
*.  .******************.*******. *

83. spacer 3.37|1817205|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MN549361 (Rhizobium phage RL2RES, complete genome) position: , mismatch: 7, identity: 0.794

cgcctttggatgcgaactcgtcggcgatcaggcg	CRISPR spacer
caagcttggatgcgaactcgtcgacgatcagaag	Protospacer
*.  .******************.*******. *

84. spacer 3.37|1817205|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_025429 (Rhizobium phage vB_RleM_P10VF, complete genome) position: , mismatch: 7, identity: 0.794

cgcctttggatgcgaactcgtcggcgatcaggcg	CRISPR spacer
cgagcttggacgcgaactcgtcgacgatcagaag	Protospacer
**  .*****.************.*******. *

85. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

86. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

87. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

88. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

89. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

90. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

91. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

92. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

93. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

94. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

95. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

96. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

97. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc---	CRISPR spacer
ttcggcgacggcccgcgcgccgggttct---gcctg	Protospacer
*. ********* **** **********   **

98. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
tcgcgcgacggcgcgcgggcccgggacccgaac	Protospacer
*** ***************** **  *.**..*

99. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_023282 (Streptomyces sp. FR1 plasmid pFRL2, complete sequence) position: , mismatch: 7, identity: 0.794

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
atcaggaagaagacgcccacgccgccgatgccga	Protospacer
*. *. *.** ******** **************

100. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033873 (Caulobacter sp. FWC26 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.794

--acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
tttcggac--gatgacgccctggccgccgaggccgc	Protospacer
   **.**  ********** ********* ****

101. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to KP027201 (Mycobacterium phage Sbash, complete genome) position: , mismatch: 7, identity: 0.794

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tgcacggtgatgtcgcccaggccgccgaggccgc	Protospacer
 .* **.* **** *************** ****

102. spacer 1.2|388405|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016462 (Blastomonas sp. RAC04 plasmid pBSY18_1, complete sequence) position: , mismatch: 8, identity: 0.733

aggggagcgcgtcaccttcgacaagggcct	CRISPR spacer
aatagtcgtcgtcaccttcggcaagggcct	Protospacer
*. .*    ***********.*********

103. spacer 1.2|388405|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 8, identity: 0.733

aggggagcgcgtcaccttcgacaagggcct	CRISPR spacer
ctcgatgggcgacaccttcgacaagggccg	Protospacer
   *. * *** *****************

104. spacer 1.2|388405|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MN813676 (Arthrobacter phage Adolin, complete genome) position: , mismatch: 8, identity: 0.733

aggggagcgcgtcaccttcgacaagggcct	CRISPR spacer
tggcctcgccgtcgccttcgacaagggcct	Protospacer
 **      ****.****************

105. spacer 1.2|388405|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MH834610 (Arthrobacter phage DrManhattan, complete genome) position: , mismatch: 8, identity: 0.733

aggggagcgcgtcaccttcgacaagggcct	CRISPR spacer
tggcctcgccgtcgccttcgacaagggcct	Protospacer
 **      ****.****************

106. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 8, identity: 0.75

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
gcggcggtctcgtccacgatcaccagcttctc	Protospacer
. *****.******** ********* ..**

107. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to MN693269 (Marine virus AFVG_25M487, complete genome) position: , mismatch: 8, identity: 0.75

aaggcggcctcgtccaggatcaccagaccctg----	CRISPR spacer
aaggcggcctcgtcgaggaccac----tccggagag	Protospacer
************** ****.***    .** *

108. spacer 2.2|460262|31|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP041349 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence) position: , mismatch: 8, identity: 0.742

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttaccctgctcggcaacgccaacctcaccca	Protospacer
*. ************** **** ****

109. spacer 2.2|460262|31|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP021468 (Komagataeibacter europaeus strain SRCM101446 plasmid pKE1446-1) position: , mismatch: 8, identity: 0.742

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttaccctgctcggcaacgccaacctcaccca	Protospacer
*. ************** **** ****

110. spacer 2.2|460262|31|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP004365 (Komagataeibacter xylinus E25 plasmid pGX5, complete sequence) position: , mismatch: 8, identity: 0.742

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttaccctgctcggcaacgccaacctcaccca	Protospacer
*. ************** **** ****

111. spacer 2.2|460262|31|NC_011365|CRISPRCasFinder,CRT matches to NC_016037 (Komagataeibacter medellinensis NBRC 3288 plasmid pGXY010, complete sequence) position: , mismatch: 8, identity: 0.742

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttaccctgctcggcaacgccaacctcaccca	Protospacer
*. ************** **** ****

112. spacer 2.2|460262|31|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP050140 (Komagataeibacter rhaeticus strain ENS 9a1a plasmid pENS1, complete sequence) position: , mismatch: 8, identity: 0.742

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
ttaccctgctcggcaacgccaacctcaccca	Protospacer
*. ************** **** ****

113. spacer 2.3|460322|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 8, identity: 0.75

gccgcgacggtgaaggggaggttgttcgacgc	CRISPR spacer
atcgtgacggtgaacgggaggttgtacagggc	Protospacer
..**.********* ********** *.. **

114. spacer 2.5|460444|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 8, identity: 0.75

gccgcgacggtgaaggggaggttgttcgacgc	CRISPR spacer
atcgtgacggtgaacgggaggttgtacagggc	Protospacer
..**.********* ********** *.. **

115. spacer 2.13|460932|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF042360 (Pseudomonas phage Phabio, complete genome) position: , mismatch: 8, identity: 0.75

attcgatacggtaatgtcggccatgttttatc	CRISPR spacer
tttcagctcggtaatgtcggtcatgtttaatt	Protospacer
 ***... ************.******* **.

116. spacer 2.14|460993|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MN369765 (Microbacterium phage Zanella, complete genome) position: , mismatch: 8, identity: 0.75

cgctcgaccagatcgcgcacaccctcggcaac	CRISPR spacer
tgaaggaccagatcgcgtacgccctcggccag	Protospacer
.*   ************.**.******** *

117. spacer 2.14|460993|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006369 (Aureimonas sp. AU20 plasmid pAU20b, complete sequence) position: , mismatch: 8, identity: 0.75

cgctcgaccagatcgcgcacaccctcggcaac	CRISPR spacer
ccctttcccagatcgcgcccaccctcgacatg	Protospacer
* **.  *********** ********.**

118. spacer 2.15|461054|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594690 (Variovorax sp. WDL1 plasmid 2) position: , mismatch: 8, identity: 0.75

gtgctggaggtgatggcggccaatcgccgcac	CRISPR spacer
tagtcggaggtgatggcggccgatcgccatgc	Protospacer
  *..****************.******...*

119. spacer 2.15|461054|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594691 (Variovorax sp. WDL1 plasmid 3) position: , mismatch: 8, identity: 0.75

gtgctggaggtgatggcggccaatcgccgcac	CRISPR spacer
tagtcggaggtgatggcggccgatcgccatgc	Protospacer
  *..****************.******...*

120. spacer 2.15|461054|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gtgctggaggtgatggcggccaatcgccgcac	CRISPR spacer
atcagggagctgatggcggcccatcgccgcta	Protospacer
.*   **** *********** ********

121. spacer 2.15|461054|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016082 (Streptomyces sp. SAT1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gtgctggaggtgatggcggccaatcgccgcac	CRISPR spacer
gtgctggagtggatggcggccaactccggtgc	Protospacer
*********  ************.. * *..*

122. spacer 2.15|461054|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

gtgctggaggtgatggcggccaatcgccgcac	CRISPR spacer
gcgctcgaggtgatcgcggccaatcccgaccg	Protospacer
*.*** ******** ********** * .*

123. spacer 2.15|461054|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MG945283 (UNVERIFIED: Microviridae sp. isolate 11472-1602, complete genome) position: , mismatch: 8, identity: 0.75

gtgctggaggtgatggcggccaatcgccgcac	CRISPR spacer
attctggaggtcatggcggccaaccgtcccgt	Protospacer
.* ******** ***********.**.* *..

124. spacer 2.17|461176|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_029005 (Streptomyces phage phiSAJS1, complete genome) position: , mismatch: 8, identity: 0.75

tggctcgggaccatcttagcggacgacatggc	CRISPR spacer
tggttcgggaccagcttagcggacatgaagaa	Protospacer
***.********* **********.  * *.

125. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
gcgagggcgcgcagcaccgcccagccgcgggc	Protospacer
*  . .** ****************** **.*

126. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
gcgagggcgcgcagcaccgcccagccgcgggc	Protospacer
*  . .** ****************** **.*

127. spacer 2.19|461298|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 8, identity: 0.75

cttaactggatcacgatcgcgctgatcctcta	CRISPR spacer
ataagcaggatcacgatcgcgccgatcgtcgt	Protospacer
 * *.* ***************.**** **

128. spacer 2.19|461298|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

cttaactggatcacgatcgcgctgatcctcta	CRISPR spacer
ctcgactggatctcgatcgtgctgatcatgat	Protospacer
**..******** ******.******* *

129. spacer 2.19|461298|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 8, identity: 0.75

cttaactggatcacgatcgcgctgatcctcta	CRISPR spacer
ctcgactggatctcgatcgtgctgatcatgat	Protospacer
**..******** ******.******* *

130. spacer 2.22|461481|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019949 (Methylocystis bryophila strain S285 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
cggctctcgcgcgtgctgaccacgctcctctt	Protospacer
  *.************** *****.****  .

131. spacer 2.22|461481|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
acggtctcgcgcgtgccgtccacgtagtcgta	Protospacer
*** ************.********  ..*

132. spacer 2.23|461542|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 8, identity: 0.75

agcgcggcgtggcgggaatcaaggtcgtcggt	CRISPR spacer
ggtgcggcgttgcgggcatcaaggtcctggcc	Protospacer
.*.******* ***** ********* * * .

133. spacer 3.18|1815949|35|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032341 (Azospirillum brasilense strain MTCC4038 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.771

atcaacacgccggcgccgatcgagatcatctcccc	CRISPR spacer
gtcaggtcgccggcggcgatcgaggtcatctccga	Protospacer
.***.  ******** ********.********

134. spacer 3.18|1815949|35|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012916 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p2, complete sequence) position: , mismatch: 8, identity: 0.771

atcaacacgccggcgccgatcgagatcatctcccc	CRISPR spacer
gtcaggtcgccggcggcgatcgaggtcatctccga	Protospacer
.***.  ******** ********.********

135. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 8, identity: 0.765

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
ccgaggcgcagcagcgcctgctcggcgcgctggg	Protospacer
******. *******************.  *  .

136. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013525 (Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence) position: , mismatch: 8, identity: 0.765

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
ccttcgatcagcagcggctgctcggcgtcggcct	Protospacer
**   * .******** ************* **

137. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040763 (Paracoccus sp. 2251 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.765

ccgaggtccagcagcgcctgctcggc-gtcgtcca	CRISPR spacer
agcaggtcgggcagcgcctgctcggcggtcggac-	Protospacer
   ***** .**************** ****  *

138. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010860 (Marinovum algicola DG 898 plasmid pMaD5, complete sequence) position: , mismatch: 8, identity: 0.765

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
cccatatccagcagcgccggcgcggcgtcggcat	Protospacer
** * .************ ** ******** *

139. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MN908694 (Microbacterium phage RubyRalph, complete genome) position: , mismatch: 8, identity: 0.765

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
ccgagctcgagcagcgcctgctcgaggcggtcat	Protospacer
***** ** ***************. *. ***

140. spacer 3.42|1817538|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 8, identity: 0.758

-aggcgcaggtcagcccggtagccggtgatgagg	CRISPR spacer
tcggca-aggtcagccccgtcgccggtgatgcct	Protospacer
  ***. ********** ** **********

141. spacer 3.42|1817538|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020948 (Rhizobium sp. CIAT894 plasmid pRheCIAT894a, complete sequence) position: , mismatch: 8, identity: 0.758

-aggcgcaggtcagcccggtagccggtgatgagg	CRISPR spacer
tcggca-aggtcagcccggtcgccggcgatgcct	Protospacer
  ***. ************* *****.****

142. spacer 3.42|1817538|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048283 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248c, complete sequence) position: , mismatch: 8, identity: 0.758

-aggcgcaggtcagcccggtagccggtgatgagg	CRISPR spacer
tcggca-aggtcagcccggtcgccggcgatgcct	Protospacer
  ***. ************* *****.****

143. spacer 3.42|1817538|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053207 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1C, complete sequence) position: , mismatch: 8, identity: 0.758

-aggcgcaggtcagcccggtagccggtgatgagg	CRISPR spacer
tcggca-aggtcagccccgtcgccggtgatgcct	Protospacer
  ***. ********** ** **********

144. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

145. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

146. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

147. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

148. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

149. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

150. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

151. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

152. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

153. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

154. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

155. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

156. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
ttcggcgacggcccgcgcgccgggttctgcctc	Protospacer
*. ********* **** **********    *

157. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tggacggccatgtggcccaggccgccgatgccgg	Protospacer
 .*.**.*  ***  *******************.

158. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tggacggccatgtggcccaggccgccgatgccgg	Protospacer
 .*.**.*  ***  *******************.

159. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019585 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tggacggccatgtggcccaggccgccgatgccgg	Protospacer
 .*.**.*  ***  *******************.

160. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tggacggccatgtggcccaggccgccgatgccgg	Protospacer
 .*.**.*  ***  *******************.

161. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022194 (Yangia pacifica strain YSBP01 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.765

---acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
tgcgcg---aggatgacgacaaggccgccgatggcca	Protospacer
   .**   ********* * ************ * *

162. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tggacggccatgtggcccaggccgccgatgccgg	Protospacer
 .*.**.*  ***  *******************.

163. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009145 (Sinorhizobium meliloti strain RMO17 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tggacggccatgtggcccaggccgccgatgccgg	Protospacer
 .*.**.*  ***  *******************.

164. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021827 (Sinorhizobium meliloti strain KH35c plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tggacggccatgtggcccaggccgccgatgccgg	Protospacer
 .*.**.*  ***  *******************.

165. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021830 (Sinorhizobium meliloti strain HM006 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tggacggccatgtggcccaggccgccgatgccgg	Protospacer
 .*.**.*  ***  *******************.

166. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021824 (Sinorhizobium meliloti strain KH46 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tggacggccatgtggcccaggccgccgatgccgg	Protospacer
 .*.**.*  ***  *******************.

167. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tggacggccatgtggcccaggccgccgatgccgg	Protospacer
 .*.**.*  ***  *******************.

168. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tgaatggccatgtggcccaggccgccgatgccgg	Protospacer
 .***..*  ***  *******************.

169. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tgaatggccatgtggcccaggccgccgatgccgg	Protospacer
 .***..*  ***  *******************.

170. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

acgaacag-gatgacgcccaggccgccgatgccga	CRISPR spacer
-tggacggccatgtggcccaggccgccgatgccgg	Protospacer
 .*.**.*  ***  *******************.

171. spacer 1.2|388405|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032327 (Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence) position: , mismatch: 9, identity: 0.7

aggggagcgcgtcaccttcgacaagggcct	CRISPR spacer
cgacccgcgcgtcacctacgacaagggggc	Protospacer
 *.   *********** *********  .

172. spacer 1.2|388405|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 9, identity: 0.7

aggggagcgcgtcaccttcgacaagggcct	CRISPR spacer
caccctgcgcgtcacccgcgacaagggcca	Protospacer
 .    **********. ***********

173. spacer 1.2|388405|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007798 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence) position: , mismatch: 9, identity: 0.7

aggggagcgcgtcaccttcgacaagggcct	CRISPR spacer
cgacccgcgcgtcacctacgacaagggggc	Protospacer
 *.   *********** *********  .

174. spacer 1.2|388405|30|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.7

aggggagcgcgtcaccttcgacaagggcct	CRISPR spacer
cccggagcgcgccaccctcgacaaggcagc	Protospacer
   ********.****.*********   .

175. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to MT658803 (Mycobacterium phage Reindeer, complete genome) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
gtcagagcctcgtccaggatcaccagatccgc	Protospacer
.  . .*********************.**

176. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP015522 (Sphingomonas sp. NIC1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
cgagcggcctcgtccacgaccaccagatcgaa	Protospacer
 ..************* **.*******.*  .

177. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP045330 (Labrenzia sp. THAF191b plasmid pTHAF191b_b, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
agccaggcctcgtccaggatgagcagacttgg	Protospacer
*.   *************** * *****.. *

178. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP045346 (Labrenzia sp. THAF187b plasmid pTHAF187b_b, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
agccaggcctcgtccaggatgagcagacttgg	Protospacer
*.   *************** * *****.. *

179. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP045334 (Labrenzia sp. THAF191a plasmid pTHAF191a_a, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
agccaggcctcgtccaggatgagcagacttgg	Protospacer
*.   *************** * *****.. *

180. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP045382 (Labrenzia sp. THAF35 plasmid pTHAF35_b, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
agccaggcctcgtccaggatgagcagacttgg	Protospacer
*.   *************** * *****.. *

181. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP045382 (Labrenzia sp. THAF35 plasmid pTHAF35_b, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
agccaggcctcgtccaggatgagcagacttgg	Protospacer
*.   *************** * *****.. *

182. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
aggtgggcctcgtctacgatcaccagacgaac	Protospacer
*.*  *********.* ***********

183. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
ttgtcggcctcgtccaggatgacgagatcaaa	Protospacer
  * **************** ** ***.*  .

184. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 9, identity: 0.719

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
tgcgcggcctcggccaggatccccagggcgtc	Protospacer
 . ********* ******** ****. * *

185. spacer 2.2|460262|31|NC_011365|CRISPRCasFinder,CRT matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 9, identity: 0.71

tccccctgctcggcaaccccaaactcaagat	CRISPR spacer
cgggcgtgctcggcaaccccaaacgcaacgc	Protospacer
.   * ****************** *** ..

186. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KX855962 (Arthrobacter phage HumptyDumpty, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

187. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF185721 (Arthrobacter phage Kabreeze, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

188. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KX522650 (Arthrobacter Phage Conboy, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

189. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MN204503 (Arthrobacter phage Linus, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

190. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF185723 (Arthrobacter phage RosiePosie, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

191. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KX670787 (Arthrobacter phage Chocolat, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

192. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF668274 (Arthrobacter phage JayCookie, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

193. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MK494107 (Arthrobacter phage Chipper1996, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

194. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF185724 (Arthrobacter phage Scavito, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

195. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KX670786 (Arthrobacter phage Chubster, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

196. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MN204499 (Arthrobacter phage Mordred, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

197. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF185725 (Arthrobacter phage Tophat, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

198. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KU160660 (Arthrobacter phage PrincessTrina, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

199. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KX855961 (Arthrobacter phage EdgarPoe, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

200. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
cctgatcctgtgcctacgccggacaccgcggc	Protospacer
**********.*** ********  * *.

201. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KX855962 (Arthrobacter phage HumptyDumpty, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

202. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF185721 (Arthrobacter phage Kabreeze, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

203. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KX522650 (Arthrobacter Phage Conboy, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

204. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MN204503 (Arthrobacter phage Linus, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

205. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF185723 (Arthrobacter phage RosiePosie, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

206. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KX670787 (Arthrobacter phage Chocolat, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

207. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF668274 (Arthrobacter phage JayCookie, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

208. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MK494107 (Arthrobacter phage Chipper1996, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

209. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF185724 (Arthrobacter phage Scavito, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

210. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KX670786 (Arthrobacter phage Chubster, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

211. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MN204499 (Arthrobacter phage Mordred, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

212. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF185725 (Arthrobacter phage Tophat, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

213. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KU160660 (Arthrobacter phage PrincessTrina, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

214. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KX855961 (Arthrobacter phage EdgarPoe, complete genome) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
ggagtatctgcgccaacgccgcaaccagtccc	Protospacer
   *  .*******.****** *********

215. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
cctgatcctgtgcctacgccggacaccgcggc	Protospacer
**********.*** ********  * *.

216. spacer 2.10|460749|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to JQ807243 (Environmental Halophage eHP-23, partial genome) position: , mismatch: 9, identity: 0.719

atctgttgaagcagcaggagggttttagaagc	CRISPR spacer
aggagttgaagcagttggagggttttagttcg	Protospacer
*   **********. ************

217. spacer 2.14|460993|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_048876 (Gordonia phage Secretariat, complete genome) position: , mismatch: 9, identity: 0.719

cgctcgaccagatcgcgcacaccctcggcaac	CRISPR spacer
cgctcgaccagatcacgcaaacctttctcgct	Protospacer
**************.**** ***.*.  *. .

218. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to AP021850 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
gtcacggcccgcaggcccgcccagccgggccg	Protospacer
* *...********  *************

219. spacer 2.19|461298|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594664 (Variovorax sp. RA8 plasmid 3) position: , mismatch: 9, identity: 0.719

cttaactggatcacgatcgcgctgatcctcta	CRISPR spacer
gaaacctggatcacgatcgagcttatccagtg	Protospacer
   * ************** *** ****  *.

220. spacer 2.22|461481|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 9, identity: 0.719

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
atcatctcgcgcatgctgtccccgttcgagca	Protospacer
*.  ********.******** *****  *

221. spacer 2.22|461481|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
atcatctcgcgcatgctgtccccgttcgagca	Protospacer
*.  ********.******** *****  *

222. spacer 2.22|461481|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
atcatctcgcgcatgctgtccccgttcgagca	Protospacer
*.  ********.******** *****  *

223. spacer 2.22|461481|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 9, identity: 0.719

acgttctcgcgcgtgctgtccacgttcctgac	CRISPR spacer
atcatctcgcgcatgctgtccccgttcgagca	Protospacer
*.  ********.******** *****  *

224. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_007763 (Rhizobium etli CFN 42 plasmid p42b, complete sequence) position: , mismatch: 9, identity: 0.719

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
ggcgcccgttcggcggtgatcccgccaatggc	Protospacer
. *..*************** **** **.*..

225. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020907 (Rhizobium etli strain NXC12 plasmid pRetNXC12a, complete sequence) position: , mismatch: 9, identity: 0.719

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
ggcgcccgttcggcggtgatcccgccaatggc	Protospacer
. *..*************** **** **.*..

226. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_021906 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1a, complete sequence) position: , mismatch: 9, identity: 0.719

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
ggcgcccgttcggcggtgatcccgccaatggc	Protospacer
. *..*************** **** **.*..

227. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014688 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence) position: , mismatch: 9, identity: 0.719

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
aagatcagttcgacggtgatgccgcgcgtggg	Protospacer
*  *** *****.************* ..*.

228. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to KX669658 (Ochrobactrum phage POA1180, complete genome) position: , mismatch: 9, identity: 0.719

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
cccatctgttgggcggtgatgccgttgagcag	Protospacer
 *****.*** *************. .*  *

229. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 9, identity: 0.719

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
aggtgaagggggtttttcccaatccggcgaga	Protospacer
 .** ************* ******  *.*

230. spacer 2.28|461847|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_015951 (Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence) position: , mismatch: 9, identity: 0.719

gcgaagacctgcgcctggagcgcctgcttgtg	CRISPR spacer
tggaagaccagcgcctggaccgcctcgtgctc	Protospacer
  ******* ********* *****  *  *

231. spacer 2.28|461847|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019036 (Massilia putida strain 6NM-7 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gcgaagacctgcgcctggagcgcctgcttgtg	CRISPR spacer
ttgtagccctgcgccttgagcgcctgcgcggt	Protospacer
 .* ** ********* ********** .*

232. spacer 2.28|461847|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015094 (Pelagibaca abyssi strain JLT2014 plasmid pPABY6, complete sequence) position: , mismatch: 9, identity: 0.719

gcgaagacctgcgcctggagcgcctgcttgtg	CRISPR spacer
ccgaaggcctgcgcctgaagcgcccgggcccg	Protospacer
 *****.**********.******.*  . .*

233. spacer 2.28|461847|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006727 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp3, complete sequence) position: , mismatch: 9, identity: 0.719

gcgaagacctgcgcctggagcgcctgcttgtg	CRISPR spacer
aaacatacctgcacctggagcgccttcttttt	Protospacer
. . * ******.************ *** *

234. spacer 3.2|1814891|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

-----cggatggcatcggggtgaaatgcgcgaacaggtc	CRISPR spacer
aatcatgg-----atcgcggtgaaatgcgcgatcaggcc	Protospacer
     .**     **** ************** ****.*

235. spacer 3.5|1815088|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to KY000037 (Agrobacterium sp. strain LBA4404 plasmid pTi_LBA4404, complete sequence) position: , mismatch: 9, identity: 0.735

cggtcaggacgatgggcagatccgcag-actgtcc	CRISPR spacer
atgtcaggacgatgagccgatccgcaacgctgat-	Protospacer
  ************.** ********. .*** .

236. spacer 3.5|1815088|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011249 (Agrobacterium tumefaciens strain Ach5 plasmid pTi, complete sequence) position: , mismatch: 9, identity: 0.735

cggtcaggacgatgggcagatccgcag-actgtcc	CRISPR spacer
atgtcaggacgatgagccgatccgcaacgctgat-	Protospacer
  ************.** ********. .*** .

237. spacer 3.5|1815088|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_002377 (Agrobacterium tumefaciens plasmid Ti, complete sequence) position: , mismatch: 9, identity: 0.735

cggtcaggacgatgggcagatccgcag-actgtcc	CRISPR spacer
atgtcaggacgatgagccgatccgcaacgctgat-	Protospacer
  ************.** ********. .*** .

238. spacer 3.5|1815088|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032920 (Agrobacterium tumefaciens strain 15955 plasmid pTi15955, complete sequence) position: , mismatch: 9, identity: 0.735

cggtcaggacgatgggcagatccgcag-actgtcc	CRISPR spacer
atgtcaggacgatgagccgatccgcaacgctgat-	Protospacer
  ************.** ********. .*** .

239. spacer 3.5|1815088|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033030 (Agrobacterium tumefaciens strain A6 plasmid pTiA6, complete sequence) position: , mismatch: 9, identity: 0.735

cggtcaggacgatgggcagatccgcag-actgtcc	CRISPR spacer
atgtcaggacgatgagccgatccgcaacgctgat-	Protospacer
  ************.** ********. .*** .

240. spacer 3.5|1815088|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000030 (Agrobacterium genomosp. 1 strain CFBP5767 plasmid pTi_CFBP5767, complete sequence) position: , mismatch: 9, identity: 0.735

cggtcaggacgatgggcagatccgcag-actgtcc	CRISPR spacer
atgtcaggacgatgagccgatccgcaacgctgat-	Protospacer
  ************.** ********. .*** .

241. spacer 3.5|1815088|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026927 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609a, complete sequence) position: , mismatch: 9, identity: 0.735

cggtcaggacgatgggcagatccgcag-actgtcc	CRISPR spacer
atgtcaggacgatgagccgatccgcaacgctgat-	Protospacer
  ************.** ********. .*** .

242. spacer 3.5|1815088|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000061 (Agrobacterium tumefaciens strain CFBP2413 plasmid pTi_CFBP2413, complete sequence) position: , mismatch: 9, identity: 0.735

cggtcaggacgatgggcagatccgcag-actgtcc	CRISPR spacer
atgtcaggacgatgagccgatccgcaacgctgat-	Protospacer
  ************.** ********. .*** .

243. spacer 3.8|1815286|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 9, identity: 0.735

tacgagaccgtgacggcggcggtggctgactttg	CRISPR spacer
cgcgagaccgtggcggcggtggtggcggccgcgg	Protospacer
..**********.******.****** * * . *

244. spacer 3.9|1815352|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024428 (Paracoccus yeei strain TT13 plasmid pTT13-6, complete sequence) position: , mismatch: 9, identity: 0.735

atcccgggcgagccgctgcccgtcatggacaaga	CRISPR spacer
atcaccggcgagccgctgcccgtcgagaaggtgt	Protospacer
*** * ******************. *.* . *

245. spacer 3.9|1815352|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029776 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

atcccgggcgagccgctgcccgtcatggacaaga	CRISPR spacer
ctgcgcggcgagacgctgcccgtcctggacccgc	Protospacer
 * *  ****** *********** *****  *

246. spacer 3.9|1815352|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to KX641266 (Mycobacterium phage Terror, complete genome) position: , mismatch: 9, identity: 0.735

atcccgggcgagccgctgcccgtcatggacaaga	CRISPR spacer
ttcgcggccgagccgctgcccgtcagccagcagt	Protospacer
 ** *** *****************   *  **

247. spacer 3.9|1815352|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to KX641265 (Mycobacterium phage Taheera, complete genome) position: , mismatch: 9, identity: 0.735

atcccgggcgagccgctgcccgtcatggacaaga	CRISPR spacer
ttcgcggccgagccgctgcccgtcagccagcagt	Protospacer
 ** *** *****************   *  **

248. spacer 3.10|1815418|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to AP014203 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C76-MedDCM-OCT-S35-C25, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

cccggccagcgcaaaatatcccgcgccgtccacg	CRISPR spacer
gtgcgccagcccaaaatatcccgcggcgtatagg	Protospacer
 .  ****** ************** *** .* *

249. spacer 3.10|1815418|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to AP014204 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C76-MedDCM-OCT-S42-C31, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

cccggccagcgcaaaatatcccgcgccgtccacg	CRISPR spacer
gtgcgccagcccaaaatatcccgcggcgtatagg	Protospacer
 .  ****** ************** *** .* *

250. spacer 3.18|1815949|35|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 9, identity: 0.743

-atcaacacgccggcgccgatcgagatcatctcccc	CRISPR spacer
gaaccgc-cgccggcgccgatctcgatcatctcgat	Protospacer
 * * .* **************  *********  .

251. spacer 3.18|1815949|35|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 9, identity: 0.743

-atcaacacgccggcgccgatcgagatcatctcccc	CRISPR spacer
gaaccgc-cgccggcgccgatctcgatcatctcgat	Protospacer
 * * .* **************  *********  .

252. spacer 3.22|1816215|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007510 (Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid) position: , mismatch: 9, identity: 0.735

tgcgcacgctggccatcggcgcgtcctggtataa	CRISPR spacer
cccgcacgctggccagcggcgcgtccagcgagcg	Protospacer
. ************* ********** *  *  .

253. spacer 3.30|1816742|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 9, identity: 0.735

tttggagcggtcaggttggccgacaccaaccaaa	CRISPR spacer
attggaggggtcgggttggccgacatacatgaga	Protospacer
 ****** ****.************.  *. *.*

254. spacer 3.30|1816742|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 9, identity: 0.735

tttggagcggtcaggttggccgacaccaaccaaa	CRISPR spacer
attggaggggtcgggttggccgacatgcatgaga	Protospacer
 ****** ****.************.  *. *.*

255. spacer 3.30|1816742|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 9, identity: 0.735

tttggagcggtcaggttggccgacaccaaccaaa	CRISPR spacer
attggaggggtcgggttggccgacatgcatgaga	Protospacer
 ****** ****.************.  *. *.*

256. spacer 3.30|1816742|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 9, identity: 0.735

tttggagcggtcaggttggccgacaccaaccaaa	CRISPR spacer
attggaggggtcgggttggccgacatgcatgaga	Protospacer
 ****** ****.************.  *. *.*

257. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

258. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

259. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

260. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

261. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

262. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

263. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

264. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

265. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

266. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

267. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

268. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

269. spacer 3.34|1817007|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gccgcaagcgcgaaaacatggaccagatcaaggc	CRISPR spacer
tgctcgaccgcgacaacatggacgagatcaagcg	Protospacer
  * *.* ***** ********* ********

270. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggcgcggaggg	Protospacer
.******* ************ *****. *   .

271. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggcgcggaggg	Protospacer
.******* ************ *****. *   .

272. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggcgcggaggg	Protospacer
.******* ************ *****. *   .

273. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggcgcggaggg	Protospacer
.******* ************ *****. *   .

274. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggcgcggaggg	Protospacer
.******* ************ *****. *   .

275. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggcgcggaggg	Protospacer
.******* ************ *****. *   .

276. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggcgcggaggg	Protospacer
.******* ************ *****. *   .

277. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggcgcggaggg	Protospacer
.******* ************ *****. *   .

278. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggcgcggaggg	Protospacer
.******* ************ *****. *   .

279. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggcgcggaggg	Protospacer
.******* ************ *****. *   .

280. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
cgattgtccagccgcgcctgctcggcttcgagta	Protospacer
* .  ******* ************* ***  .*

281. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
cgattgtccagccgcgcctgctcggcttcgagta	Protospacer
* .  ******* ************* ***  .*

282. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcggcaagcaggcgcgcctgctcggcgtcgtcga	Protospacer
.**. .  ***  ******************* *

283. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
ctcgtgaccagcagcacctgcacggcgtcgtgcg	Protospacer
*. . * ********.***** ********* *.

284. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
cgcacgcccagcagcgcctgcttggcctcgtagc	Protospacer
*  * *.***************.*** ****

285. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_015179 (Acidiphilium multivorum AIU301 plasmid pACMV3, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
ccgaggtccagcagaccctgctcgcgcacgagcg	Protospacer
**************  ********    **  *.

286. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045327 (Mycobacterium sp. THAF192 plasmid pTHAF192_b, complete sequence) position: , mismatch: 9, identity: 0.735

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
gccacgaacagcagcgggtgctcggcgtcgtcgt	Protospacer
 * * *  ********  **************

287. spacer 3.37|1817205|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to LR745207 (uncultured phage genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.735

cgcctttggatgcgaactcgtcggcga-----tcaggcg	CRISPR spacer
tgcctttggctgctaactcgtcggcgagatcttt-----	Protospacer
.******** *** *************     *.

288. spacer 3.42|1817538|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_023600 (Mycobacterium phage Jolie1, complete genome) position: , mismatch: 9, identity: 0.727

aggcgcaggtcagcccggtagccggtgatgagg	CRISPR spacer
atcatcaggtcagcctggaagccggtgatggcc	Protospacer
*    **********.** ***********.

289. spacer 3.42|1817538|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to KJ433975 (Mycobacterium phage 40BC, complete genome) position: , mismatch: 9, identity: 0.727

aggcgcaggtcagcccggtagccggtgatgagg	CRISPR spacer
atcatcaggtcagcctggaagccggtgatggcc	Protospacer
*    **********.** ***********.

290. spacer 3.42|1817538|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to KJ433973 (Mycobacterium phage 39HC, complete genome) position: , mismatch: 9, identity: 0.727

aggcgcaggtcagcccggtagccggtgatgagg	CRISPR spacer
atcatcaggtcagcctggaagccggtgatggcc	Protospacer
*    **********.** ***********.

291. spacer 3.42|1817538|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_024145 (Mycobacterium phage Hosp, complete genome) position: , mismatch: 9, identity: 0.727

aggcgcaggtcagcccggtagccggtgatgagg	CRISPR spacer
atcatcaggtcagcctggaagccggtgatggcc	Protospacer
*    **********.** ***********.

292. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 9, identity: 0.727

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
tcgggcgacggcgcgccggcccgggcggcatcc	Protospacer
**************** **** ** .  *.  *

293. spacer 3.43|1817603|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to JF937105 (Mycobacterium phage Rey, complete genome) position: , mismatch: 9, identity: 0.727

tcgggcgacggcgcgcgggccgggttctcgggc	CRISPR spacer
gcgggcgagggggcgcgggccgggtgttagctg	Protospacer
 ******* ** ************* .* *

294. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
ttaatcgccatgtggcccaggccgccgatgccga	Protospacer
 ..* *.  ***  ********************

295. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 9, identity: 0.735

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
tagccctggctgacgccgaggccgccgatgcaaa	Protospacer
  *  * ** ******* ************* .*

296. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
acagcgaggatatcgcccaggccgccgatgtgca	Protospacer
**..  *****. *****************.  *

297. spacer 4.11|1820047|34|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP042825 (Rhizobium sp. WL3 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

gccgaccgcgtcggacaggagtcgcaaggttgtc	CRISPR spacer
cctcaccgcgtcggccaggcgtcgcaaggcaggt	Protospacer
 *. ********** **** *********. * .

298. spacer 2.1|460201|32|NC_011365|CRISPRCasFinder,CRT matches to NZ_CP045120 (Rubrobacter sp. SCSIO 52909 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

aaggcggcctcgtccaggatcaccagaccctg	CRISPR spacer
ccggcggcctcggccaggctcaccacggagtc	Protospacer
  ********** ***** ****** .   *

299. spacer 2.4|460383|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 10, identity: 0.688

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
aatcggcctgcgccggcgccggaaccggtggc	Protospacer
  * . *********.**********.**

300. spacer 2.6|460505|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 10, identity: 0.688

cctgatcctgcgccgacgccggaaccagtccg	CRISPR spacer
aatcggcctgcgccggcgccggaaccggtggc	Protospacer
  * . *********.**********.**

301. spacer 2.14|460993|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 10, identity: 0.688

cgctcgaccagatcgcgcacaccctcggcaac	CRISPR spacer
tcgccgacctgatcgcgctcaccctcgagcat	Protospacer
.  .***** ******** ********.  *.

302. spacer 2.18|461237|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046906 (Streptomyces sp. QHH-9511 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ggcgtagcccgcagcaccgcccagccggggac	CRISPR spacer
atcgtggtccgcagcaccgcccagctcatcgc	Protospacer
. ***.*.*****************. .  .*

303. spacer 2.24|461603|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 10, identity: 0.688

accatccgttcggcggtgatgccgcgaacgat	CRISPR spacer
gccatcagttcggcggtgctgccgtagcggcc	Protospacer
.***** *********** *****...  * .

304. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MH697582 (Mycobacterium phage Ejimix, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

305. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MH697583 (Mycobacterium phage EricMillard, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

306. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MH727551 (Mycobacterium phage Kalah2, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

307. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF919504 (Mycobacterium phage DmpstrDiver, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

308. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MH399772 (Mycobacterium phage Constella, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

309. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MH077579 (Mycobacterium phage Halley, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

310. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to JF937090 (Mycobacterium virus BAKA, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

311. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MH669017 (Mycobacterium phage Zelink, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

312. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MN062701 (Mycobacterium phage Dallas, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

313. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MK524527 (Mycobacterium phage ThreeRngTarjay, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

314. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MK279849 (Mycobacterium phage Duke13, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

315. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MN183286 (Mycobacteriophage Yeet, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

316. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MK524529 (Mycobacterium phage Phoebus, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

317. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MF919512 (Mycobacterium phage Klein, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

318. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_026584 (Mycobacterium phage Minerva, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

319. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to NC_022067 (Mycobacterium phage Wanda, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

320. spacer 2.26|461725|32|NC_011365|CRISPRCasFinder,CRT,PILER-CR matches to MK967379 (Mycobacterium phage HokkenD, complete genome) position: , mismatch: 10, identity: 0.688

cagttaagggggtttttcgcaatcccccaatt	CRISPR spacer
tcacgaagggggtctttcgcaataccccacga	Protospacer
. .. ********.********* *****

321. spacer 3.8|1815286|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.706

tacgagaccgtgacggcggcggtggctgactttg	CRISPR spacer
ggcgactccgtgacggcggcggtggccaaggccg	Protospacer
 .***  *******************..*  ..*

322. spacer 3.9|1815352|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_008703 (Mycobacterium sp. KMS plasmid pMKMS01, complete sequence) position: , mismatch: 10, identity: 0.706

atcccgggcgagccgctgcccgtcatggacaaga	CRISPR spacer
atcacgggcgagtcgctgcccgtcgaagccggcc	Protospacer
*** ********.***********. .* *..

323. spacer 3.9|1815352|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_009339 (Mycolicibacterium gilvum PYR-GCK plasmid pMFLV01, complete sequence) position: , mismatch: 10, identity: 0.706

atcccgggcgagccgctgcccgtcatggacaaga	CRISPR spacer
atcacgggcgagtcgctgcccgtcgaagccggcc	Protospacer
*** ********.***********. .* *..

324. spacer 3.19|1816016|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to X80164 (Bacteriophage phi-H dcm4, dcm5a and dcm5b genes for cytosine methylase) position: , mismatch: 10, identity: 0.706

cagcggttccgttcggaattcgaggaattccagc	CRISPR spacer
gagcggttccggtcggagttcgaggcctgtctcg	Protospacer
 ********** *****.*******  * .*

325. spacer 3.19|1816016|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MK002701 (Halobacterium phage phiH variant phiH1, complete genome) position: , mismatch: 10, identity: 0.706

cagcggttccgttcggaattcgaggaattccagc	CRISPR spacer
gagcggttccggtcggagttcgaggcctgtctcg	Protospacer
 ********** *****.*******  * .*

326. spacer 3.22|1816215|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017148 (Bosea vaviloviae strain Vaf18 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

tgcgcacgctggccatcggcgcgtcctggtataa	CRISPR spacer
cggtgacgctggcaatcagcgcgtcctggtcgtc	Protospacer
.*   ******** ***.************

327. spacer 3.32|1816874|35|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017300 (Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence) position: , mismatch: 10, identity: 0.714

ctcgggatgttgattgcccggtcaacatttgcagg	CRISPR spacer
caccaacgcttgattgcccgctcaacaattgcagc	Protospacer
* * ..   *********** ****** ******

328. spacer 3.32|1816874|35|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034154 (Rhodococcus sp. NJ-530 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

ctcgggatgttgattgcccggtcaacatttgcagg	CRISPR spacer
caccaacgcttgattgcccgctcaacaattgcagc	Protospacer
* * ..   *********** ****** ******

329. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

330. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

331. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022762 (Ralstonia solanacearum strain T95 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

332. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023017 (Ralstonia solanacearum strain SL3022 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

333. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014703 (Ralstonia solanacearum strain KACC 10722 plasmid, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

334. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022760 (Ralstonia solanacearum strain T98 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

335. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022789 (Ralstonia solanacearum strain SL3175 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

336. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022771 (Ralstonia solanacearum strain T51 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

337. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022777 (Ralstonia solanacearum strain T11 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

338. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022799 (Ralstonia solanacearum strain SL2064 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

339. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

340. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

341. spacer 3.35|1817073|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

ccgaggtccagcagcgcctgctcggcgtcgtcca	CRISPR spacer
tcgaggtcgagcagcgcctgcgcggccaggaggg	Protospacer
.******* ************ ****   *   .

342. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042821 (Octadecabacter sp. SW4 plasmid pow42, complete sequence) position: , mismatch: 10, identity: 0.706

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
agcggttggatgatgcccaggacgccgatgctgg	Protospacer
*  ... ******.******* *********.*.

343. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 10, identity: 0.706

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
ttcaggccgatggcgcccaggccgcagatgccca	Protospacer
 . *.   ****.************ ****** *

344. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010728 (Phaeobacter inhibens strain P88 plasmid pP88_c, complete sequence) position: , mismatch: 10, identity: 0.706

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
agcggttggatgatgcccaggacgccgatgctgg	Protospacer
*  ... ******.******* *********.*.

345. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MN586029 (Mycobacterium phage Hannaconda, complete genome) position: , mismatch: 10, identity: 0.706

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
atgttgccgatgacgcccaggccgccgccgccac	Protospacer
*.*     ******************* .***.

346. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MK524521 (Mycobacterium phage Schatzie, complete genome) position: , mismatch: 10, identity: 0.706

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
atgttgccgatgacgcccaggccgccgccgccac	Protospacer
*.*     ******************* .***.

347. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MF133445 (Mycobacterium phage Lucky2013, complete genome) position: , mismatch: 10, identity: 0.706

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
atgttgccgatgacgcccaggccgccgccgccac	Protospacer
*.*     ******************* .***.

348. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to JF937101 (Mycobacterium virus LittleE, complete genome) position: , mismatch: 10, identity: 0.706

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
atgttgccgatgacgcccaggccgccgccgccac	Protospacer
*.*     ******************* .***.

349. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MN183286 (Mycobacteriophage Yeet, complete genome) position: , mismatch: 10, identity: 0.706

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
atgttgccgatgacgcccaggccgccgccgccac	Protospacer
*.*     ******************* .***.

350. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to KM400683 (Mycobacterium phage Ariel, complete genome) position: , mismatch: 10, identity: 0.706

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
atgttgccgatgacgcccaggccgccgccgccac	Protospacer
*.*     ******************* .***.

351. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MK524504 (Mycobacterium phage Hughesyang, complete genome) position: , mismatch: 10, identity: 0.706

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
atgttgccgatgacgcccaggccgccgccgccac	Protospacer
*.*     ******************* .***.

352. spacer 4.10|1819981|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to MF668284 (Mycobacterium phage Squint, complete genome) position: , mismatch: 10, identity: 0.706

acgaacaggatgacgcccaggccgccgatgccga	CRISPR spacer
atgttgccgatgacgcccaggccgccgccgccac	Protospacer
*.*     ******************* .***.

353. spacer 3.18|1815949|35|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 11, identity: 0.686

atcaacacgccggcgccgatcgagatcatctcccc	CRISPR spacer
tacgtagcgccgctgccgatcgagatcatctcgat	Protospacer
  *.  .***** .******************  .

354. spacer 3.18|1815949|35|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 11, identity: 0.686

atcaacacgccggcgccgatcgagatcatctcccc	CRISPR spacer
tacgtagcgccgctgccgatcgagatcatctcgat	Protospacer
  *.  .***** .******************  .

355. spacer 3.18|1815949|35|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 11, identity: 0.686

atcaacacgccggcgccgatcgagatcatctcccc	CRISPR spacer
gccaacactccggcgcccatcgagatctcggcgat	Protospacer
..****** ******** ********* .  *  .

356. spacer 3.44|1817668|34|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 11, identity: 0.676

cgcactggtcgaggcttacggcaagctctccaag	CRISPR spacer
ggcactggtcgaggcgtacgccaaggcccagggc	Protospacer
 ************** **** **** .*.  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

576230 : 631264

uncultured_Mediterranean_phage(21.43%)

portal,capsid,integrase,tRNA,terminase,plate,tail

attL 600121:600166|attR 640103:640148

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012226193.1\|576230_577493_-\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_012553178.1\|577489_578329_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_012226195.1\|578380_578782_-	VOC family protein	NA	NA	NA	NA
WP_041249781.1\|578880_579528_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_012553180.1\|579747_581655_+	hypothetical protein	NA	NA	NA	NA
WP_144880127.1\|581755_582073_+	hypothetical protein	NA	NA	NA	NA
WP_012226199.1\|582159_582897_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.9e-14	28.9
WP_012226200.1\|582893_583922_-	iron ABC transporter permease	NA	NA	NA	NA
WP_144880126.1\|583918_584863_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012226202.1\|585051_585246_-	hypothetical protein	NA	NA	NA	NA
WP_012553183.1\|585441_588324_-	aminomethyl-transferring glycine dehydrogenase	M4QFZ1	Prochlorococcus_phage	1.7e-260	51.3
WP_012226206.1\|588361_588727_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_012553184.1\|588749_589883_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_012226209.1\|590290_590596_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_012553185.1\|590647_591517_-	polyamine aminopropyltransferase	NA	NA	NA	NA
WP_012553186.1\|591638_592097_-	adenosylmethionine decarboxylase	A0A1D7SEZ2	Cyanophage	1.2e-14	42.6
WP_012553187.1\|592255_595168_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	60.3
WP_012553188.1\|595462_596017_+	single-stranded DNA-binding protein	A0A0U2C0X4	Paracoccus_phage	3.2e-38	64.3
WP_012226218.1\|596184_598977_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.1e-93	32.8
WP_012226220.1\|598969_599479_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.3e-30	45.2
WP_012226222.1\|599537_600023_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.4e-34	50.0
600121:600166	attL	NA	NA	NA	NA
WP_012553189.1\|600273_601515_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012553190.1\|601710_603342_-	hypothetical protein	NA	NA	NA	NA
WP_012553192.1\|604742_605525_-	hypothetical protein	NA	NA	NA	NA
WP_012553193.1\|605713_606181_+	hypothetical protein	A0A2H4J2P5	uncultured_Caudovirales_phage	3.2e-23	51.5
WP_043458628.1\|606880_607378_+	hypothetical protein	NA	NA	NA	NA
WP_012553196.1\|607649_607859_-	hypothetical protein	NA	NA	NA	NA
WP_012553197.1\|607975_608656_-	hypothetical protein	NA	NA	NA	NA
WP_012553198.1\|608905_609340_-	hypothetical protein	NA	NA	NA	NA
WP_012553199.1\|609402_609909_-	hypothetical protein	NA	NA	NA	NA
WP_012553200.1\|610267_610858_-	hypothetical protein	NA	NA	NA	NA
WP_157864097.1\|611065_611431_+	hypothetical protein	NA	NA	NA	NA
WP_012553201.1\|611461_612808_-\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	4.9e-16	22.7
WP_043458629.1\|613227_613803_+	HNH endonuclease	A0A142K975	Gordonia_phage	5.3e-12	45.6
WP_157864099.1\|614093_614447_-	hypothetical protein	NA	NA	NA	NA
WP_012553202.1\|614458_615238_-	DNA circularization N-terminal domain-containing protein	NA	NA	NA	NA
WP_049762851.1\|615273_615735_-	hypothetical protein	NA	NA	NA	NA
WP_012553203.1\|615754_616948_-	hypothetical protein	A0A222YWB9	Escherichia_phage	9.0e-06	45.7
WP_157864101.1\|617176_617362_-	hypothetical protein	NA	NA	NA	NA
WP_157864103.1\|617420_617801_-	hypothetical protein	NA	NA	NA	NA
WP_012553204.1\|617922_619062_-\|tail	Mu-like protein prophage tail sheath protein gpL-like protein	NA	NA	NA	NA
WP_157864105.1\|619139_619697_+	hypothetical protein	NA	NA	NA	NA
WP_157864107.1\|619683_620073_-	hypothetical protein	NA	NA	NA	NA
WP_012553205.1\|620461_621109_-	hypothetical protein	NA	NA	NA	NA
WP_157864109.1\|621108_621264_-	hypothetical protein	NA	NA	NA	NA
WP_012553206.1\|621302_623486_-	hypothetical protein	NA	NA	NA	NA
WP_012553207.1\|623580_624999_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_157864111.1\|625233_625563_-	hypothetical protein	NA	NA	NA	NA
WP_157864113.1\|625585_625825_-	HNH endonuclease	NA	NA	NA	NA
WP_081434692.1\|625973_626423_-	hypothetical protein	NA	NA	NA	NA
WP_157864115.1\|626422_626845_-	hypothetical protein	NA	NA	NA	NA
WP_012553208.1\|626864_628619_-\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	1.7e-48	28.6
WP_157864117.1\|628699_629011_+	hypothetical protein	NA	NA	NA	NA
WP_157864119.1\|629423_629816_+	hypothetical protein	NA	NA	NA	NA
WP_012553209.1\|630172_631264_+\|plate	baseplate J/gp47 family protein	A0A2P9JZK6	Alteromonadaceae_phage	5.5e-26	29.1
640103:640148	attR	NA	NA	NA	NA

DBSCAN-SWA_2

715955 : 787581

Staphylococcus_phage(20.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012553257.1\|715955_718571_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	9.4e-141	36.3
WP_012226362.1\|718575_719304_+	hypothetical protein	NA	NA	NA	NA
WP_012226364.1\|719300_720314_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_012553258.1\|721015_728074_+	type I polyketide synthase	NA	NA	NA	NA
WP_012553259.1\|728070_729357_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_144880124.1\|729299_730520_-	capsular biosynthesis protein	NA	NA	NA	NA
WP_012553261.1\|730516_731758_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_144880123.1\|731754_733410_-	capsule biosynthesis protein	NA	NA	NA	NA
WP_012553263.1\|733567_734737_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_012553265.1\|736855_737860_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	4.8e-45	31.4
WP_012553266.1\|738320_739787_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_157864127.1\|739815_740932_+\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0
WP_012224987.1\|741037_741817_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	7.9e-35	37.3
WP_157864088.1\|742495_743553_-\|transposase	IS630-like element ISGdi4 family transposase	NA	NA	NA	NA
WP_144880476.1\|743821_745861_-	dextranase	NA	NA	NA	NA
WP_012553269.1\|745760_745982_-	hypothetical protein	NA	NA	NA	NA
WP_012553270.1\|746123_747059_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012553272.1\|747523_749131_-	hypothetical protein	V5L4U5	Insectomime_virus	7.8e-13	29.7
WP_012553273.1\|749167_750727_-	hypothetical protein	A0A2N9QVU4	Dishui_lake_phycodnavirus	2.4e-27	30.5
WP_012553275.1\|751519_752167_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.5e-12	31.4
WP_144880477.1\|752163_752913_-	ABC transporter permease	NA	NA	NA	NA
WP_012553277.1\|752960_754136_-	capsule polysaccharide transporter	NA	NA	NA	NA
WP_049762853.1\|754314_755640_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_012553279.1\|755824_756985_+	polysaccharide export protein	NA	NA	NA	NA
WP_012553280.1\|757061_758015_-	K channel inward rectifier domain-containing protein	NA	NA	NA	NA
WP_012553281.1\|758166_758388_-	hypothetical protein	NA	NA	NA	NA
WP_012226407.1\|758463_758880_+	VOC family protein	NA	NA	NA	NA
WP_012226408.1\|758903_759191_+	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_012226409.1\|759213_759423_-	hypothetical protein	NA	NA	NA	NA
WP_157864129.1\|759558_760425_-	CHAD domain-containing protein	NA	NA	NA	NA
WP_041249417.1\|760562_761006_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_012226415.1\|761193_762345_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	4.0e-19	26.0
WP_012553284.1\|762364_763618_+	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_012553061.1\|763754_764525_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.1e-32	36.9
WP_012226833.1\|764514_766038_-\|transposase	IS21-like element ISGdi17 family transposase	NA	NA	NA	NA
WP_012226420.1\|767201_767666_+	hypothetical protein	NA	NA	NA	NA
WP_012226421.1\|767888_768929_+	low specificity L-threonine aldolase	NA	NA	NA	NA
WP_012226422.1\|768925_769549_+	LysE family translocator	NA	NA	NA	NA
WP_012553287.1\|769559_770411_-	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
WP_012553288.1\|770458_770890_-	UrcA family protein	NA	NA	NA	NA
WP_012226425.1\|771037_772462_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_012226426.1\|772490_773117_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_012553289.1\|773124_774312_-	low temperature requirement protein A	NA	NA	NA	NA
WP_049762991.1\|774343_776263_-	M61 family metallopeptidase	NA	NA	NA	NA
WP_012226433.1\|777079_778222_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012226434.1\|778214_781316_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_012226435.1\|781312_782830_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_012553291.1\|782947_784471_+	sugar ABC transporter ATP-binding protein	A0A076FI99	Aureococcus_anophage	2.0e-05	22.9
WP_012226437.1\|784467_785514_+	ABC transporter permease	NA	NA	NA	NA
WP_012226441.1\|785510_786518_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012553292.1\|786588_787581_+\|transposase	IS481-like element ISGdi9 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1016686 : 1060886

Leptospira_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157864127.1\|1016686_1017803_+\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0
WP_012222646.1\|1018027_1019086_-\|transposase	IS481-like element ISGdi10 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-126	63.9
WP_012226804.1\|1020846_1021611_+	DUF72 domain-containing protein	NA	NA	NA	NA
WP_012553417.1\|1021978_1022809_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012226806.1\|1022774_1023767_+	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012226807.1\|1023763_1025236_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-12	26.6
WP_012226808.1\|1025232_1026267_+	ABC transporter permease	NA	NA	NA	NA
WP_012226809.1\|1026263_1027151_+	ABC transporter permease	NA	NA	NA	NA
WP_012226810.1\|1027147_1027711_+	cysteine hydrolase	NA	NA	NA	NA
WP_012553418.1\|1027707_1028586_+	carbohydrate kinase family protein	NA	NA	NA	NA
WP_012226816.1\|1028591_1029374_+	nucleoside phosphorylase	NA	NA	NA	NA
WP_012553419.1\|1029370_1030138_+	SIS domain-containing protein	NA	NA	NA	NA
WP_012553420.1\|1030152_1031604_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_043458689.1\|1031657_1034054_+	TonB-dependent receptor	NA	NA	NA	NA
WP_012553422.1\|1034275_1035511_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_012553423.1\|1035543_1038072_-	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	4.1e-16	38.5
WP_012553424.1\|1038147_1039419_-	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_012553425.1\|1039576_1040299_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.8e-29	40.5
WP_012553426.1\|1040295_1043178_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012553427.1\|1043177_1043909_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_144880564.1\|1043926_1044736_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_144880565.1\|1044768_1045659_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_012553430.1\|1045690_1046413_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.2e-26	38.2
WP_012553431.1\|1046399_1047053_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_012553432.1\|1047049_1047709_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_012553433.1\|1047705_1048551_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012553434.1\|1048774_1048990_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_157864206.1\|1049006_1050401_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_043459193.1\|1050430_1051549_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012226850.1\|1051545_1052493_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_012226852.1\|1052497_1053139_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_012226854.1\|1053177_1054572_+	dihydropyrimidinase	NA	NA	NA	NA
WP_157864088.1\|1054742_1055800_-\|transposase	IS630-like element ISGdi4 family transposase	NA	NA	NA	NA
WP_157864088.1\|1056765_1057823_-\|transposase	IS630-like element ISGdi4 family transposase	NA	NA	NA	NA
WP_012553437.1\|1058282_1059107_-\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_043458697.1\|1059148_1059331_-	hypothetical protein	NA	NA	NA	NA
WP_157864127.1\|1059768_1060886_-\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0

DBSCAN-SWA_4

1808299 : 1874829

Bacillus_phage(11.11%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012222312.1\|1808299_1808710_-\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA
WP_012222311.1\|1808709_1808934_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_012553886.1\|1809187_1809859_+	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA
WP_012553887.1\|1809855_1811679_+	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA
WP_012553888.1\|1811671_1812610_+	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA
WP_012222307.1\|1812618_1813275_+	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_012553889.1\|1813274_1814315_+	type I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_012222305.1\|1814318_1814609_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_043459250.1\|1820209_1822075_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.2e-33	30.0
WP_012553891.1\|1822298_1822985_+	endonuclease III	NA	NA	NA	NA
WP_012222299.1\|1822988_1825112_-	ComEC/Rec2 family competence protein	NA	NA	NA	NA
WP_012222298.1\|1825294_1826695_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_012222297.1\|1826691_1827657_+	aspartate carbamoyltransferase catalytic subunit	M1I6M4	Paramecium_bursaria_Chlorella_virus	3.0e-28	32.2
WP_012553893.1\|1827653_1828946_+	dihydroorotase	NA	NA	NA	NA
WP_012553894.1\|1828942_1829581_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_012553895.1\|1829577_1830765_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	4.3e-24	41.2
WP_012553896.1\|1830786_1833561_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	9.2e-78	28.5
WP_012222292.1\|1833563_1835909_+	ribonuclease R	Q0GXV6	Lactococcus_phage	3.9e-53	32.2
WP_012553897.1\|1835908_1837699_+	PDZ domain-containing protein	A0A0R6PIZ1	Moraxella_phage	2.0e-09	26.9
WP_012553898.1\|1837717_1838056_+	DUF1491 family protein	NA	NA	NA	NA
WP_012222289.1\|1838268_1839411_+	OmpA family protein	NA	NA	NA	NA
WP_012222288.1\|1839439_1840345_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_144880369.1\|1840393_1841368_-	alpha/beta hydrolase fold domain-containing protein	NA	NA	NA	NA
WP_041249210.1\|1841528_1843496_+	FUSC family protein	NA	NA	NA	NA
WP_012222285.1\|1843516_1844809_-	MFS transporter	NA	NA	NA	NA
WP_012222284.1\|1845087_1845627_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_012222283.1\|1845623_1846640_-	threonine-phosphate decarboxylase	NA	NA	NA	NA
WP_012222282.1\|1846775_1848254_-	cobyric acid synthase	NA	NA	NA	NA
WP_012222281.1\|1848253_1848877_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_012222279.1\|1849947_1850451_+	glycine zipper family protein	NA	NA	NA	NA
WP_012553902.1\|1851748_1852888_-\|transposase	IS110-like element ISGdi7 family transposase	NA	NA	NA	NA
WP_157864168.1\|1854835_1855054_+	hypothetical protein	NA	NA	NA	NA
WP_012553903.1\|1855107_1856451_+\|transposase	IS1182-like element ISGdi13 family transposase	NA	NA	NA	NA
WP_012222260.1\|1856528_1857365_-\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA
WP_012553292.1\|1858186_1859179_+\|transposase	IS481-like element ISGdi9 family transposase	NA	NA	NA	NA
WP_144880567.1\|1859247_1859496_+	hypothetical protein	NA	NA	NA	NA
WP_012553904.1\|1859655_1860141_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012553905.1\|1860337_1860766_+	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_012553906.1\|1860836_1861223_+	MAPEG family protein	NA	NA	NA	NA
WP_012553907.1\|1861809_1862424_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_012553908.1\|1862497_1863481_+	oxidoreductase	NA	NA	NA	NA
WP_012553909.1\|1863890_1864526_-	HD domain-containing protein	NA	NA	NA	NA
WP_012553910.1\|1864760_1865531_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.6e-32	36.9
WP_012222646.1\|1865686_1866745_-\|transposase	IS481-like element ISGdi10 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-126	63.9
WP_049762892.1\|1866759_1867389_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_012553911.1\|1867504_1867954_+	hypothetical protein	NA	NA	NA	NA
WP_012553912.1\|1867911_1868847_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012553913.1\|1868850_1869726_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012553914.1\|1869768_1870746_-	aldo/keto reductase	NA	NA	NA	NA
WP_012553915.1\|1870897_1871842_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012553916.1\|1872218_1872584_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_012553917.1\|1872580_1873099_+	RES domain-containing protein	NA	NA	NA	NA
WP_043458825.1\|1873359_1873692_+	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_157864127.1\|1873711_1874829_-\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0

DBSCAN-SWA_5

1896917 : 1994595

Leptospira_phage(17.65%)

integrase,transposase,tRNA

attL 1962289:1962310|attR 1994662:1994683

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157864088.1\|1896917_1897974_+\|transposase	IS630-like element ISGdi4 family transposase	NA	NA	NA	NA
WP_144880580.1\|1898383_1899322_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_144880579.1\|1899474_1900674_+	arabinose transporter	NA	NA	NA	NA
WP_157864127.1\|1900983_1902100_+\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0
WP_081434714.1\|1902123_1902363_+	hypothetical protein	NA	NA	NA	NA
WP_012553061.1\|1902443_1903214_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.1e-32	36.9
WP_157864088.1\|1903277_1904335_-\|transposase	IS630-like element ISGdi4 family transposase	NA	NA	NA	NA
WP_012222646.1\|1905117_1906176_-\|transposase	IS481-like element ISGdi10 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-126	63.9
WP_157864170.1\|1907207_1907591_+	SMEK domain-containing protein	NA	NA	NA	NA
WP_157864088.1\|1907587_1908645_-\|transposase	IS630-like element ISGdi4 family transposase	NA	NA	NA	NA
WP_012222260.1\|1908823_1909660_+\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA
WP_012553139.1\|1909798_1911049_-\|transposase	IS701-like element ISGdi12 family transposase	NA	NA	NA	NA
WP_162013726.1\|1911121_1911583_+	hypothetical protein	NA	NA	NA	NA
WP_081434715.1\|1911807_1913463_+	DUF2326 domain-containing protein	NA	NA	NA	NA
WP_157864088.1\|1913524_1914581_+\|transposase	IS630-like element ISGdi4 family transposase	NA	NA	NA	NA
WP_012553949.1\|1914839_1915265_-	hypothetical protein	NA	NA	NA	NA
WP_012553950.1\|1915270_1917253_-	conjugal transfer protein TraG	NA	NA	NA	NA
WP_012553951.1\|1917410_1917701_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012553952.1\|1917693_1917942_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_012553953.1\|1918038_1918902_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_169307523.1\|1918977_1919649_+	hypothetical protein	NA	NA	NA	NA
WP_012553139.1\|1919626_1920877_+\|transposase	IS701-like element ISGdi12 family transposase	NA	NA	NA	NA
WP_012553954.1\|1921393_1922074_+	hypothetical protein	NA	NA	NA	NA
WP_012553955.1\|1922088_1922451_+	cupin domain-containing protein	NA	NA	NA	NA
WP_012553956.1\|1922509_1924264_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_012222184.1\|1924828_1925917_-\|transposase	IS110-like element ISGdi15 family transposase	NA	NA	NA	NA
WP_012224920.1\|1926595_1927078_-	DUF2840 domain-containing protein	NA	NA	NA	NA
WP_041249340.1\|1927160_1927733_+	hypothetical protein	NA	NA	NA	NA
WP_012553958.1\|1928132_1928402_+	hypothetical protein	NA	NA	NA	NA
WP_041249339.1\|1928478_1929111_+	hypothetical protein	NA	NA	NA	NA
WP_012224911.1\|1929684_1930764_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012553959.1\|1931050_1931875_+\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_012222646.1\|1932239_1933298_+\|transposase	IS481-like element ISGdi10 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-126	63.9
WP_012223947.1\|1933934_1934492_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_157864211.1\|1934873_1936101_+\|transposase	IS3-like element ISGdi14 family transposase	Q8W6R2	Burkholderia_virus	7.1e-99	63.9
WP_012223951.1\|1936279_1936762_-	Hsp20 family protein	M4QDX9	Cyanophage	2.0e-17	37.2
WP_012553437.1\|1937084_1937909_+\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_102324447.1\|1937963_1938227_+	YXWGXW repeat-containing protein	NA	NA	NA	NA
WP_010511782.1\|1938747_1938996_+	hypothetical protein	NA	NA	NA	NA
WP_010511780.1\|1939104_1939368_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_012223960.1\|1939360_1939705_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	5.9e-19	48.4
WP_012553962.1\|1940467_1941664_-\|transposase	IS256-like element ISGdi8 family transposase	A0A220NQR7	Corynebacterium_phage	8.5e-89	44.4
WP_157864127.1\|1941887_1943005_-\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0
WP_012553963.1\|1949023_1951627_-	ATP-dependent chaperone ClpB	K4FB40	Cronobacter_phage	1.4e-115	35.8
WP_012225064.1\|1951819_1952338_-	heme-binding protein	NA	NA	NA	NA
WP_012225063.1\|1952344_1953409_-	aldo/keto reductase	NA	NA	NA	NA
WP_012553964.1\|1953513_1954410_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012553965.1\|1954452_1955277_+\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_012222257.1\|1955340_1955565_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157864176.1\|1955596_1956004_+	restriction endonuclease	NA	NA	NA	NA
WP_157864127.1\|1956023_1957141_-\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0
WP_012222259.1\|1958714_1960271_+	hypothetical protein	NA	NA	NA	NA
WP_012553966.1\|1960820_1961933_+	Fic family protein	NA	NA	NA	NA
1962289:1962310	attL	NA	NA	NA	NA
WP_012553967.1\|1962456_1963608_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_012222266.1\|1963780_1964638_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_049763010.1\|1964754_1966155_+	sugar porter family MFS transporter	O13311	Aichi_virus	1.9e-23	27.0
WP_012222268.1\|1966157_1966961_-	NAD kinase	NA	NA	NA	NA
WP_012553969.1\|1967010_1967862_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_012553970.1\|1968215_1969211_+	cation transporter	NA	NA	NA	NA
WP_012222271.1\|1969197_1970094_-	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_012553971.1\|1970124_1971123_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_012553972.1\|1971195_1973022_+	biosynthetic-type acetolactate synthase large subunit	G8DDL3	Micromonas_pusilla_virus	2.1e-46	28.3
WP_012222274.1\|1973127_1973643_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_012222275.1\|1973685_1974705_+	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_012223140.1\|1974887_1976231_+\|transposase	IS1182-like element ISGdi13 family transposase	NA	NA	NA	NA
WP_012553965.1\|1976303_1977128_-\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_081434717.1\|1977753_1977963_+	hypothetical protein	NA	NA	NA	NA
WP_144880566.1\|1978003_1981561_-	helicase	NA	NA	NA	NA
WP_157864212.1\|1981927_1983289_+	hypothetical protein	NA	NA	NA	NA
WP_012222260.1\|1983625_1984462_+\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA
WP_144880578.1\|1984390_1985077_-	hypothetical protein	NA	NA	NA	NA
WP_012553975.1\|1985091_1985859_-	hypothetical protein	NA	NA	NA	NA
WP_012553976.1\|1985982_1986366_-	hypothetical protein	NA	NA	NA	NA
WP_012553977.1\|1986786_1987755_+	relaxase domain-containing protein	NA	NA	NA	NA
WP_012226833.1\|1987861_1989385_+\|transposase	IS21-like element ISGdi17 family transposase	NA	NA	NA	NA
WP_012224987.1\|1989374_1990154_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	7.9e-35	37.3
WP_012553978.1\|1990455_1991280_+\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_012553979.1\|1991217_1991595_-\|transposase	IS3 family transposase	A0A0N7C035	Escherichia_phage	4.1e-21	51.5
WP_011253145.1\|1991591_1991915_-\|transposase	transposase	B6ETC4	Enterobacteria_phage	7.8e-21	50.5
WP_169307524.1\|1991883_1992306_-	hypothetical protein	NA	NA	NA	NA
WP_012224988.1\|1992999_1994595_-\|integrase	tyrosine-type recombinase/integrase	A0A0U4JNS1	Bacillus_phage	2.1e-05	29.9
1994662:1994683	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2651242 : 2697044

Burkholderia_virus(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012222260.1\|2651242_2652079_+\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA
WP_012554287.1\|2652709_2653960_-	MFS transporter	NA	NA	NA	NA
WP_012222621.1\|2653997_2654918_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012554288.1\|2655055_2655970_+	fatty acid desaturase	NA	NA	NA	NA
WP_012222625.1\|2655966_2656776_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_012554289.1\|2656824_2657931_+	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_012222627.1\|2658307_2659483_+	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_012222628.1\|2659479_2659836_+	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_012222629.1\|2659832_2661260_+	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	NA	NA	NA	NA
WP_012554290.1\|2661628_2663020_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012554291.1\|2663058_2664351_-	MFS transporter	Q6JIH2	Burkholderia_virus	7.1e-57	34.1
WP_012222633.1\|2664433_2664886_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012222634.1\|2664904_2665462_+	isochorismatase family protein	NA	NA	NA	NA
WP_012554292.1\|2665458_2666856_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_012554293.1\|2666863_2667964_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_012554294.1\|2668055_2669252_+	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_012554295.1\|2669259_2670096_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012222639.1\|2670122_2671265_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_012554296.1\|2671361_2672306_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_043459308.1\|2672351_2673140_-	sugar ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.8e-10	28.1
WP_012554298.1\|2673203_2674379_-	ABC transporter permease	NA	NA	NA	NA
WP_012554299.1\|2674544_2675402_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_012554300.1\|2675662_2677591_+	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_012222660.1\|2679459_2680362_+	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_012554302.1\|2680343_2681144_+	5-deoxy-glucuronate isomerase	NA	NA	NA	NA
WP_012554303.1\|2681178_2682672_+	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_012554304.1\|2682717_2683731_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_012222669.1\|2683785_2684316_-	RcnB family protein	NA	NA	NA	NA
WP_012222184.1\|2684596_2685685_+\|transposase	IS110-like element ISGdi15 family transposase	NA	NA	NA	NA
WP_012554305.1\|2686889_2687882_-\|transposase	IS481-like element ISGdi9 family transposase	NA	NA	NA	NA
WP_012554306.1\|2688369_2689218_+	hypothetical protein	NA	NA	NA	NA
WP_012222673.1\|2689329_2689620_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012554307.1\|2689609_2689909_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_012222646.1\|2690617_2691676_+\|transposase	IS481-like element ISGdi10 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-126	63.9
WP_012554308.1\|2691995_2692178_-	hypothetical protein	NA	NA	NA	NA
WP_144880585.1\|2692562_2692859_+	hypothetical protein	NA	NA	NA	NA
WP_144880586.1\|2692869_2693211_+	hypothetical protein	NA	NA	NA	NA
WP_157864127.1\|2693608_2694726_-\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0
WP_012554312.1\|2695817_2697044_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.8e-41	42.8

DBSCAN-SWA_7

2741920 : 2748620

Bordetella_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012554362.1\|2741920_2743324_+	S-antigen family protein	Q775A9	Bordetella_phage	3.3e-07	67.5
WP_012554363.1\|2743391_2744510_+	hypothetical protein	Q9MC69	Pseudomonas_phage	7.6e-07	41.8
WP_012554364.1\|2744585_2744885_+	hypothetical protein	NA	NA	NA	NA
WP_157864188.1\|2744881_2745160_+	hypothetical protein	A0A2I7QVW8	Vibrio_phage	1.4e-05	55.6
WP_012554365.1\|2745156_2745369_+	hypothetical protein	NA	NA	NA	NA
WP_012554366.1\|2745365_2746250_+	hypothetical protein	A0A0R8VB90	Thermobifida_phage	9.5e-29	30.4
WP_012554367.1\|2746246_2747281_+	AAA family ATPase	A0A141GF08	Brucella_phage	4.8e-40	43.0
WP_012554368.1\|2747277_2747538_+	hypothetical protein	NA	NA	NA	NA
WP_012554369.1\|2747534_2747765_+	hypothetical protein	NA	NA	NA	NA
WP_043459339.1\|2747864_2748620_+	phage Gp37/Gp68 family protein	M4R142	Tetraselmis_viridis_virus	1.3e-74	58.7

DBSCAN-SWA_8

2794638 : 2855515

Bacillus_virus(15.38%)

protease,tRNA,terminase,tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012554401.1\|2794638_2795061_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_012228349.1\|2795097_2795262_-	hypothetical protein	NA	NA	NA	NA
WP_012554402.1\|2795353_2796223_-\|protease	protease	NA	NA	NA	NA
WP_012228352.1\|2796554_2796830_+	hypothetical protein	NA	NA	NA	NA
WP_012554404.1\|2796834_2799351_+	topoisomerase	Q9JMN6	Wolbachia_phage	3.7e-09	38.5
WP_012554405.1\|2799643_2802568_+	EAL domain-containing protein	G3MA91	Bacillus_virus	6.2e-16	30.0
WP_043458964.1\|2802731_2803889_-	hypothetical protein	NA	NA	NA	NA
WP_144880236.1\|2804300_2804795_+\|terminase	terminase small subunit	I6NV32	Burkholderia_virus	3.7e-14	42.5
WP_012554408.1\|2804875_2805100_+	hypothetical protein	NA	NA	NA	NA
WP_012228361.1\|2805125_2806619_+	hypothetical protein	A0A1B1IVN4	uncultured_Mediterranean_phage	7.1e-101	41.9
WP_012554409.1\|2806620_2806866_+	hypothetical protein	NA	NA	NA	NA
WP_012554410.1\|2806862_2808986_+	hypothetical protein	NA	NA	NA	NA
WP_144880235.1\|2808957_2809137_+	hypothetical protein	NA	NA	NA	NA
WP_012554412.1\|2809136_2809550_+	co-chaperone GroES	NA	NA	NA	NA
WP_012554415.1\|2811097_2811694_+	hypothetical protein	NA	NA	NA	NA
WP_012228365.1\|2811706_2812615_+	hypothetical protein	A0A218MME7	uncultured_virus	2.0e-58	40.5
WP_043458967.1\|2812679_2812907_+	hypothetical protein	NA	NA	NA	NA
WP_012228367.1\|2812971_2813388_+	hypothetical protein	A0A218MLF9	uncultured_virus	2.7e-10	37.0
WP_012554417.1\|2813398_2813875_+	hypothetical protein	NA	NA	NA	NA
WP_012228369.1\|2813871_2815758_+	hypothetical protein	A0A0E3M2T0	Rhodoferax_phage	1.7e-06	40.9
WP_012554418.1\|2815764_2819397_+	hypothetical protein	A0A2I7RQ21	Vibrio_phage	4.6e-61	35.9
WP_012554419.1\|2819396_2820032_+	hypothetical protein	NA	NA	NA	NA
WP_012554420.1\|2820031_2820490_+	hypothetical protein	NA	NA	NA	NA
WP_043458969.1\|2820474_2821488_+	hypothetical protein	NA	NA	NA	NA
WP_012554422.1\|2821594_2823127_+	hypothetical protein	NA	NA	NA	NA
WP_144880228.1\|2823167_2823623_+	hypothetical protein	NA	NA	NA	NA
WP_012228379.1\|2823619_2824096_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012554424.1\|2824092_2824809_+	hypothetical protein	NA	NA	NA	NA
WP_012228384.1\|2824857_2825607_-	YfdX family protein	NA	NA	NA	NA
WP_144880234.1\|2825963_2826806_+\|tail	tail fiber protein	V5YTB8	Pseudomonas_phage	1.7e-22	65.6
WP_012228387.1\|2826802_2827276_+	hypothetical protein	NA	NA	NA	NA
WP_012554426.1\|2827275_2827758_+	hypothetical protein	A0A2I7S7C4	Vibrio_phage	1.4e-10	35.4
WP_012554427.1\|2827980_2828760_+	hypothetical protein	NA	NA	NA	NA
WP_144880233.1\|2829005_2829770_+	hypothetical protein	NA	NA	NA	NA
WP_012228391.1\|2829708_2830551_-	DUF3667 domain-containing protein	NA	NA	NA	NA
WP_012228393.1\|2830762_2831251_+	bacterioferritin	NA	NA	NA	NA
WP_012554429.1\|2831304_2831991_-	hypothetical protein	NA	NA	NA	NA
WP_012554430.1\|2832263_2833241_+	hypothetical protein	NA	NA	NA	NA
WP_012554431.1\|2833312_2834596_-	DEAD/DEAH box helicase	A0A0N9Q9J4	Chrysochromulina_ericina_virus	3.1e-44	31.5
WP_012554432.1\|2834923_2835961_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_162013727.1\|2835953_2836388_+	hypothetical protein	NA	NA	NA	NA
WP_012222260.1\|2836356_2837193_+\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA
WP_157864190.1\|2837189_2837480_+	hypothetical protein	NA	NA	NA	NA
WP_012554433.1\|2837804_2838917_-	metallophosphoesterase	NA	NA	NA	NA
WP_012554434.1\|2839010_2843108_-	EAL domain-containing protein	G3MA91	Bacillus_virus	8.7e-16	32.7
WP_012222260.1\|2843183_2844020_+\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA
WP_012228417.1\|2844313_2844634_-	DUF3325 family protein	NA	NA	NA	NA
WP_012228418.1\|2844609_2846040_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_012554436.1\|2846060_2846333_-	hypothetical protein	NA	NA	NA	NA
WP_012554437.1\|2846340_2848734_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_012554438.1\|2849275_2851933_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	5.1e-17	39.2
WP_012554439.1\|2852129_2852348_+	hypothetical protein	NA	NA	NA	NA
WP_012228430.1\|2852353_2852728_-	VOC family protein	NA	NA	NA	NA
WP_157864192.1\|2854458_2855515_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

2921265 : 3037290

111

Leptospira_phage(11.11%)

integrase,transposase

attL 3026065:3026080|attR 3045750:3045765

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157864127.1\|2921265_2922382_+\|transposase	IS3-like element ISGdi11 family transposase	S5WIU1	Leptospira_phage	2.9e-54	44.0
WP_012228537.1\|2922637_2924953_-	ATP-binding protein	NA	NA	NA	NA
WP_012228546.1\|2925138_2925600_+	DNA mismatch endonuclease Vsr	E5E3X5	Burkholderia_phage	3.1e-31	49.3
WP_012223140.1\|2926026_2927370_+\|transposase	IS1182-like element ISGdi13 family transposase	NA	NA	NA	NA
WP_012222260.1\|2927673_2928510_+\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA
WP_012228554.1\|2928674_2929103_-	DUF1810 domain-containing protein	A0A2H4UVK5	Bodo_saltans_virus	1.5e-11	37.1
WP_012228561.1\|2929172_2930075_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012228563.1\|2930257_2931031_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_012554485.1\|2931161_2932508_+	amino acid permease	NA	NA	NA	NA
WP_012228567.1\|2932484_2933315_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA
WP_012228569.1\|2933357_2933936_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_012554486.1\|2933974_2935999_-	AsmA family protein	NA	NA	NA	NA
WP_043459369.1\|2936009_2938532_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_012228575.1\|2938884_2939793_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_012554488.1\|2939823_2940006_-	hypothetical protein	NA	NA	NA	NA
WP_012228581.1\|2940288_2940969_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_144880527.1\|2941152_2942754_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_012228583.1\|2942929_2943343_+	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_012228584.1\|2943520_2943847_-	hypothetical protein	NA	NA	NA	NA
WP_043458994.1\|2943840_2944221_-	hypothetical protein	NA	NA	NA	NA
WP_012554491.1\|2944322_2944505_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_012554492.1\|2944522_2944918_+	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	6.6e-22	44.1
WP_012226833.1\|2945993_2947517_+\|transposase	IS21-like element ISGdi17 family transposase	NA	NA	NA	NA
WP_012222757.1\|2947506_2948286_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	7.9e-35	37.3
WP_012554494.1\|2948550_2948760_-	hypothetical protein	NA	NA	NA	NA
WP_012228610.1\|2949032_2949239_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.7e-11	50.0
WP_012554495.1\|2949620_2949773_+	hypothetical protein	NA	NA	NA	NA
WP_144880568.1\|2950213_2952793_+	EAL domain-containing protein	NA	NA	NA	NA
WP_043458995.1\|2952843_2953911_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_043459373.1\|2953933_2954818_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_157864217.1\|2954867_2955650_+	phosphate ABC transporter ATP-binding protein PstB	G9BWD6	Planktothrix_phage	2.6e-22	31.4
WP_012228615.1\|2955675_2956371_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_012228616.1\|2956395_2957115_+	phosphate regulon transcriptional regulator PhoB	A0A220YL79	Alteromonas_virus	4.3e-11	31.8
WP_012228617.1\|2957152_2958361_+	histidine kinase	W8CYF6	Bacillus_phage	1.2e-18	25.5
WP_012228618.1\|2958524_2959529_+	phosphate ABC transporter substrate-binding protein PstS	A0A222YW41	Synechococcus_phage	3.0e-39	36.8
WP_012554501.1\|2960048_2961806_+	hypothetical protein	NA	NA	NA	NA
WP_012554502.1\|2962015_2963371_+	inorganic phosphate transporter	NA	NA	NA	NA
WP_012228623.1\|2963428_2963707_-	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_012228624.1\|2963723_2964005_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_012553437.1\|2964140_2964965_+\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_012228625.1\|2964981_2965707_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-29	36.8
WP_012554504.1\|2965703_2967257_-	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA
WP_012228627.1\|2967482_2968223_+	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_012228628.1\|2968230_2968659_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_144880426.1\|2968655_2969264_-	peroxiredoxin	NA	NA	NA	NA
WP_012228630.1\|2969459_2970422_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_012228631.1\|2970432_2971248_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_012228632.1\|2971347_2971608_+	hypothetical protein	NA	NA	NA	NA
WP_012228633.1\|2971664_2972141_-	CBS domain-containing protein	NA	NA	NA	NA
WP_012228634.1\|2972262_2972961_-	phosphoribosyltransferase	NA	NA	NA	NA
WP_081434740.1\|2972962_2974288_-	erythromycin esterase family protein	NA	NA	NA	NA
WP_012554507.1\|2974561_2975548_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_162013729.1\|2975556_2977620_+	ABC transporter permease	A0A2H4PQG7	Staphylococcus_phage	1.3e-15	27.0
WP_157864194.1\|2977914_2979102_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_012223140.1\|2981134_2982478_+\|transposase	IS1182-like element ISGdi13 family transposase	NA	NA	NA	NA
WP_012553437.1\|2982576_2983401_+\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_012554510.1\|2983524_2983812_+	N-acetyltransferase	NA	NA	NA	NA
WP_012554511.1\|2983808_2985176_+	cation:dicarboxylase symporter family transporter	NA	NA	NA	NA
WP_012554512.1\|2985279_2987133_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
WP_012554513.1\|2987637_2990811_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	2.4e-53	21.8
WP_012554514.1\|2990810_2991992_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012228649.1\|2991988_2993584_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_012554515.1\|2993647_2994550_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012554517.1\|2994936_2995929_-\|transposase	IS481-like element ISGdi9 family transposase	NA	NA	NA	NA
WP_012228657.1\|2996185_2996491_-	hypothetical protein	NA	NA	NA	NA
WP_012554518.1\|2996487_2997141_-	AAA family ATPase	D4HTX7	Vibrio_phage	6.2e-17	30.9
WP_012554519.1\|2997279_2998225_-\|transposase	IS630-like element ISGdi6 family transposase	A0A1V0SCG6	Indivirus	8.1e-10	26.2
WP_012554521.1\|2999103_2999400_-	WGR domain-containing protein	NA	NA	NA	NA
WP_144880588.1\|2999548_2999917_-	hypothetical protein	NA	NA	NA	NA
WP_012222260.1\|2999992_3000829_-\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA
WP_012553437.1\|3000947_3001772_+\|transposase	IS5-like element ISGdi2 family transposase	NA	NA	NA	NA
WP_157864088.1\|3001807_3002865_-\|transposase	IS630-like element ISGdi4 family transposase	NA	NA	NA	NA
WP_012223140.1\|3003024_3004368_+\|transposase	IS1182-like element ISGdi13 family transposase	NA	NA	NA	NA
WP_012553139.1\|3004541_3005792_-\|transposase	IS701-like element ISGdi12 family transposase	NA	NA	NA	NA
WP_012554522.1\|3005959_3006400_+	hypothetical protein	NA	NA	NA	NA
WP_144880583.1\|3006358_3007021_-	hypothetical protein	NA	NA	NA	NA
WP_144880582.1\|3007330_3007513_-	hypothetical protein	NA	NA	NA	NA
WP_081434743.1\|3007664_3007847_-\|transposase	transposase	NA	NA	NA	NA
WP_157864088.1\|3007962_3009019_+\|transposase	IS630-like element ISGdi4 family transposase	NA	NA	NA	NA
WP_081434744.1\|3008993_3009668_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012554524.1\|3010104_3010818_+	SHOCT domain-containing protein	NA	NA	NA	NA
WP_012554525.1\|3010831_3011860_+	hypothetical protein	NA	NA	NA	NA
WP_157864195.1\|3012426_3013483_+\|transposase	IS630-like element ISGdi4 family transposase	NA	NA	NA	NA
WP_012222260.1\|3013523_3014360_-\|transposase	IS5-like element ISGdi1 family transposase	NA	NA	NA	NA
WP_157864196.1\|3014523_3014739_-	hypothetical protein	NA	NA	NA	NA
WP_012222646.1\|3015409_3016468_-\|transposase	IS481-like element ISGdi10 family transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	1.2e-126	63.9
WP_012554528.1\|3016587_3017304_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.3e-87	64.8
WP_012553962.1\|3017639_3018836_+\|transposase	IS256-like element ISGdi8 family transposase	A0A220NQR7	Corynebacterium_phage	8.5e-89	44.4
WP_012228320.1\|3018960_3020382_+	adenylosuccinate lyase family protein	NA	NA	NA	NA
WP_012228319.1\|3022193_3022898_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_012554529.1\|3023076_3023541_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_012228317.1\|3023693_3024317_+	cytochrome b/b6 domain-containing protein	NA	NA	NA	NA
WP_012554530.1\|3024313_3025063_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_012228315.1\|3025169_3025466_+	pentapeptide MXKDX repeat protein	NA	NA	NA	NA
WP_012228314.1\|3025719_3026601_+	alpha/beta fold hydrolase	NA	NA	NA	NA
3026065:3026080	attL	NA	NA	NA	NA
WP_043459385.1\|3026678_3028199_+	amidase	NA	NA	NA	NA
WP_012554532.1\|3028217_3028661_-	GFA family protein	NA	NA	NA	NA
WP_012554533.1\|3028685_3029129_-	hypothetical protein	NA	NA	NA	NA
WP_144880311.1\|3029210_3029912_-	RNA methyltransferase	NA	NA	NA	NA
WP_012228205.1\|3030400_3030724_-	hypothetical protein	NA	NA	NA	NA
WP_012554535.1\|3030780_3031248_-	hypothetical protein	NA	NA	NA	NA
WP_081434746.1\|3031513_3032641_+	hypothetical protein	NA	NA	NA	NA
WP_043459001.1\|3032633_3032867_+	hypothetical protein	NA	NA	NA	NA
WP_012228196.1\|3032919_3033111_-	hypothetical protein	NA	NA	NA	NA
WP_012554539.1\|3033447_3033585_+	hypothetical protein	NA	NA	NA	NA
WP_012554540.1\|3033599_3034319_+	SH3 domain-containing protein	NA	NA	NA	NA
WP_012228188.1\|3034412_3034652_+	hypothetical protein	NA	NA	NA	NA
WP_012554541.1\|3034679_3034958_-	hypothetical protein	NA	NA	NA	NA
WP_012228183.1\|3035089_3035395_+	hypothetical protein	NA	NA	NA	NA
WP_012554542.1\|3035513_3035681_+	hypothetical protein	NA	NA	NA	NA
WP_012554543.1\|3035931_3037290_+\|integrase	integrase arm-type DNA-binding domain-containing protein	NA	NA	NA	NA
3045750:3045765	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NC_011365.1|WP_012554362.1|2741920_2743324_+|S-antigen-family-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NC_011365.1|WP_012554362.1|2741920_2743324_+|S-antigen-family-protein

2741920_2743324_+

467 aa aa

2741920-2748620

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NC_011365_3	TypeI	3.21\|1816150\|33\|NC_011365\|PILER-CR,CRISPRCasFinder,CRT	1816150-1816182	33	2742257-2742289	0

1. spacer 3.21|1816150|33|NC_011365|PILER-CR,CRISPRCasFinder,CRT matches to NC_011365 position: 2742257-2742289, mismatch: 0

atgcgcgaggctgccgctttcatccgcgctaac	CRISPR spacer
atgcgcgaggctgccgctttcatccgcgctaac	Protospacer
*********************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011365

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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