CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011769	Desulfovibrio vulgaris str. 'Miyazaki F', complete genome	6 crisprs	csa3,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2	0	17	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011769_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011769_1

241915-242071

Orphan

Consensus_repeat	Method
GATGAAGCGACTTCTGGCCATCGACGACGAACCCGGGCACCGCCTGATGGTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011769_1

>merge|NC_011769|1|241915-242071|CRISPRCasFinder
GATGAAGCGACTTCTGGCCATCGACGACGAACCCGGGCACCGCCTGATGGTCCACGCCGTCATGTCGGGCGCGGGCATTCGCACAGCCATCACCAAGGAATCAAGATGAAGCGACTTCTGGTCATCGACGACGAACCCGGGCACCGCCTGATGGTCC

>NC_011769|1|1|241915-242071|CRISPRCasFinder
GATGAAGCGACTTCTGGCCATCGACGACGAACCCGGGCACCGCCTGATGGTCC	ACGCCGTCATGTCGGGCGCGGGCATTCGCACAGCCATCACCAAGGAATCAA
GATGAAGCGACTTCTGGTCATCGACGACGAACCCGGGCACCGCCTGATGGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011769.1\|WP_155860580.1\|235669_239317_+\|cell-envelope-biogenesis-protein-AsmA	unknown	unknown	gnl\|CDD\|379224
NC_011769.1\|WP_012611356.1\|219856_220909_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NC_011769.1\|WP_012611358.1\|222838_223672_+\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_012611376.1\|249805_251251_-\|glycine-dehydrogenase-subunit-2	unknown	unknown	gnl\|CDD\|235292
NC_011769.1\|WP_012611375.1\|248394_249816_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224169
NC_011769.1\|WP_012611363.1\|229449_230418_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240639
NC_011769.1\|WP_012611361.1\|225566_226856_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|237359
NC_011769.1\|WP_012611362.1\|227130_229419_-\|PTS-sugar-transporter-subunit-IIC/EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NC_011769.1\|WP_155860472.1\|231138_232344_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380633
NC_011769.1\|WP_012611379.1\|253294_253708_-\|response-regulator	unknown	unknown	gnl\|CDD\|381099
NC_011769.1\|WP_012611365.1\|232340_235571_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_011769.1\|WP_012611357.1\|221146_222682_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|100105
NC_011769.1\|WP_012611370.1\|244494_244860_+\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|366732
NC_011769.1\|WP_041727756.1\|224324_225302_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|379238
NC_011769.1\|WP_012611378.1\|252595_252979_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NC_011769.1\|WP_012611369.1\|243623_244205_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|379646
NC_011769.1\|WP_012611372.1\|245543_246170_-\|redoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239313
NC_011769.1\|WP_155860581.1\|246532_247114_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NC_011769.1\|WP_012611377.1\|251247_252579_-\|aminomethyl-transferring-glycine-dehydrogenase-subunit-GcvPA	unknown	unknown	gnl\|CDD\|234769
NC_011769.1\|WP_155860473.1\|247201_248251_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586

Protein	Function_ID	Function_description	E-value
NC_011769.1\|WP_155860580.1\|235669_239317_+\|cell-envelope-biogenesis-protein-AsmA	gnl\|CDD\|379224	pfam13502, AsmA_2, AsmA-like C-terminal region. This family is similar to the C-terminal of the AsmA protein of E. coli.	2.89046e-11
NC_011769.1\|WP_012611356.1\|219856_220909_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NC_011769.1\|WP_012611376.1\|249805_251251_-\|glycine-dehydrogenase-subunit-2	gnl\|CDD\|235292	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB.	0
NC_011769.1\|WP_012611375.1\|248394_249816_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224169	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion].	1.58602e-117
NC_011769.1\|WP_012611363.1\|229449_230418_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240639	cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	0
NC_011769.1\|WP_012611361.1\|225566_226856_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|237359	PRK13352, PRK13352, phosphomethylpyrimidine synthase ThiC.	0
NC_011769.1\|WP_012611362.1\|227130_229419_-\|PTS-sugar-transporter-subunit-IIC/EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.87732e-90
NC_011769.1\|WP_155860472.1\|231138_232344_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380633	cd19978, PBP1_ABC_ligand_binding-like, periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally, however.	3.77777e-119
NC_011769.1\|WP_012611379.1\|253294_253708_-\|response-regulator	gnl\|CDD\|381099	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC. This family is composed of hybrid sensor histidine kinases/response regulators that are sensor histidine kinases (HKs) fused with a REC domain, similar to the sensor histidine kinase CKI1 from Arabidopsis thaliana, which is involved in multi-step phosphorelay (MSP) signaling that mediates responses to a variety of important stimuli in plants. MSP involves a signal being transferred from HKs via histidine phosphotransfer proteins (AHP1-AHP5) to nuclear response regulators. The CKI1 REC domain specifically interacts with the downstream signaling protein AHP2, AHP3 and AHP5. The plant MSP system has evolved from the prokaryotic two-component system (TCS), which allows organisms to sense and respond to changes in environmental conditions. This family also includes bacterial hybrid sensor HKs such as Escherichia coli RcsC, which is a component of the Rcs signalling pathway that controls a variety of physiological functions like capsule synthesis, cell division, and motility. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.09698e-21
NC_011769.1\|WP_012611365.1\|232340_235571_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.20979e-116
NC_011769.1\|WP_012611357.1\|221146_222682_-\|radical-SAM-protein	gnl\|CDD\|100105	cd01335, Radical_SAM, Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme of the biosynthesis of molybdopterin.	3.92989e-16
NC_011769.1\|WP_012611370.1\|244494_244860_+\|Hpt-domain-containing-protein	gnl\|CDD\|366732	pfam01627, Hpt, Hpt domain. The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072).	7.27131e-11
NC_011769.1\|WP_041727756.1\|224324_225302_-\|glycosyltransferase	gnl\|CDD\|379238	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1.	1.11481e-23
NC_011769.1\|WP_012611378.1\|252595_252979_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	7.2029e-65
NC_011769.1\|WP_012611369.1\|243623_244205_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|379646	pfam14559, TPR_19, Tetratricopeptide repeat.	0.000113875
NC_011769.1\|WP_012611372.1\|245543_246170_-\|redoxin-domain-containing-protein	gnl\|CDD\|239313	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure.	1.12662e-79
NC_011769.1\|WP_155860581.1\|246532_247114_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	1.67602e-05
NC_011769.1\|WP_012611377.1\|251247_252579_-\|aminomethyl-transferring-glycine-dehydrogenase-subunit-GcvPA	gnl\|CDD\|234769	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA.	0
NC_011769.1\|WP_155860473.1\|247201_248251_-\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	5.65315e-42

>NC_011769.1|WP_155860580.1|235669_239317_+|cell-envelope-biogenesis-protein-AsmA
MRPLPIILCLVLLAVGGGYAALRHLVDSDAAARQLGESLTALTGHASRVQGGVRVVFDPDPTVVARDVIVDQAPPFAGQAPLLRMAEARFNLRLAPLFSGRVEVRGVEVARPQLVLLADGEGRNGWDGLLGRLGGSSDASSPASLSPADSSAASSASPAFPAASASPVDAAAPPTVVGEGPRMEAPSPSSDISWFTPQVVLTGTATLRIDDADLQWRNTVSGAQLHVRGVDVDLVASKGRLAEAALRHGSLEWRTGPQARPAMLRDLDVSFTTPGGGWRALRDLLQGALDVMPHREGAGQKNPAGQESPANHERPAGQGTLAGPGSAAVRAGVLRMSCTYDVAPGVTGSLGLEAAVSHAAPDTAIPGMAGLLPAEAQGTARARGHMPLGGQAVPFELVVPFDARRGADPRITGARLQLEQDALEVTASLSGLGTAAATARGTATVRRLSLPRWFGFARDLPVGLQHALDALSGHLEFSLDRHGLRVPVLQAEVLGMPVHGSGGVADFAAPVIAIDVTGADIDVNRVMPELAGADPHPLVHAGPPAVEAAHGAQGAAPQGGAIPSDEIPDVGYDIRVRAEKAHGWKFDVGGLAFRCSPSREGTLLEFTAASFYGGTAKALLDIVDDYRLQFTAADVALARPAAIVSGRESAAGKLALKAALRGQGHSLGAVAASMRGTLDARIDDGFLLVWRNGALERQPFTRFDLRGEATGQGLPGGKVPPRPPARLPWTGAWRAAMRTPSGTEWEATANGPLLFDTATGLPVAADLLPATLRLALPPALTDLDRTVEARFTGPVRFDFDAGSLSSDRLEAESLGARGSLSLSATGMNKVATWAGTLSARFADPRATLRGLGLAPWKMSDGALRTADLSAGFHQSGNTFDLTNVRLVLDGQPVAGTVSRISGQRPLWRFSLHADAFDADRYLAPRTPDPVPGEPEPAPSNEPLHHAWLRSFDADGRVSVGRGTFKQLRFDGFTAPILLRDGQLEVGPIASGFYGGTLGGSIRATSGDALATRLVLDARDFELEPVGLRFAGKDYVGGKTLLVLDVQGPLRTELDMPAALSGTWAFEVRDGFYSTRGKSSTPEQSRTPFSEARASGYMRTGVLHNEDFTLNSLLLTMVGRGWVDLAKKRIDYTTDVSVVRVPTFPIRFHGDLSKPETSVRQTGIVTGTLGNLGSTVFDLLGGVIGMPLRVLEGLQDAARGNGTAPGGQQPRQQSGQ
>NC_011769.1|WP_012611365.1|232340_235571_+|EAL-domain-containing-protein
MRRSRLFGRTLRGLIVLFGVYAAVTSIYSGWTLHTLLIREYESKALAIARAIAGADLESLIGRDVTTVQSRIDQFLGIDGVSYVLVADGRGETVAHTFVPVVPEPVRELVASLAGVRMNEVTVLRDRLSLPRPQGGASGGGGREVMHVTMPVFAGVGGFVHIGMDRGRISDYIDGAILRQQGLGLAFFAACAVGAWMLLYSISRPLMRLTDQARRVAVHDFSAPPDLPAMKADDEIGDLSRAMHTMSRDLAGLVEGLEDSVRQATAELGGALEQLSTIVAGMADGLLVTDPQGLVLRSNAALCEMFGLDADPDGRSVCEVFGFVAPAVRMVGDGIHEFAFETEDGEDIVPEAVVRDNAALLAFLDGADVPGQPMTGVSCTLPGPSGALAARPVTGPDQGLPQGAPCPSGTGTALRSGEVAAVRRDGTPCWVELSLVRRQVMGTTYGICLVRDVTERRRAQEALHRAHGMLERKVRERTRELSRANAQLMLENAERRTVEQALRRAEARFRGIFEHALEGIFQSTPEGRFLSVNPAMARILGYEGVQELLEGVESIGDGVYADPARRDEFVARMEEHGQVNAFEFRGRRKGGDLIWLSVNARRVPGADGATMYYEGFLEDVTMGHESRERLEHQAFHDPLTGLPNRVLFHDRLQMALKRAARRRNYTFAMLYLDLDRFKVINDSLGHDVGDALLKVVSAKLRECVRDVDTVARFGGDEFGVLLEETPTRGTAVRVARRIRAHLAEPVRIGPHEVFTTASIGIVLRTDQYSTPEELVRDADTAMYRAKEQGQSRFKVFNKRMREEALRLLTIETDLRRAVERQEMRLHYQPVVALEDGGLHGVEALLRWTRTEGGDISPAEFVPVAEDTGLITSIGAFALEEVCLQLRRWNEAGLPPPGVVHVNISGRQFMQPGLPHAVEMLLERTGTDPRSLRFEVTESVLMRHGSQAITVMAQLRDLGIRLCLDDFGTGYSSLGYLKRLPVDSIKIDRSFVAGLEHDRDGQAIVRSIVSLGLHLGLEIVAEGVETPTQAEMLASLGCRYAQGFLYAPPVSADDLAAMLDATPFPSTGGGVFVGGSV
>NC_011769.1|WP_155860472.1|231138_232344_+|ABC-transporter-substrate-binding-protein
MSAPFSGPGVSLGREFHRGAASCLARVNAAGGVHGRRVEIVAMDDGYDPDRTVRNVIRLIEEERVFALFGLVGTPTVTRVLPLLGGHPERTVPLLFPFTGARPLSLPRHEGLVFRLRASYDAEFSELVDRLHDAGCSRIAVFYQADAYGREGWADLRDALARRRLPLAAEASYPRGSGSDADFTEQAGLILQGMPDAVVCVGTDATCAAFIRDLRDVPAARGAKRQAGQPSPQFSGKGGPAIPVAMPSFVDSRQLVDLLVAMGRSVRRDYTHDLVLTEVVSPWTGNLPAAIDYRRDFAEMADVPDVLDIPGNDAAPPSAPGEVSFEGYLAARLLVRALERMGPHPSPAGLHEALVGLDGYDLGVGQPYRYTPTEQGLGLVRFATVRGGVPVDLRDFSEWRR
>NC_011769.1|WP_012611363.1|229449_230418_-|D-2-hydroxyacid-dehydrogenase
MRIVVLDGYTLNPGDNPWDAVAALGELTVHDRTPREAIRERAAGAHMVLTNKTPLDADTIAALPDLAYIGVLATGYDVVDIRAAAARSIPVCNVPGYGTEAVAQHVFAFLLELCRRIARHDASVKVGNWSANKDWCFWETTQIELTGKAMGIVGFGNMGKRVGQIANAFGMKVLAYSPNTRTMPGYEPFAYVSLDELFARSDVVTLHCPLTDATRGMVNRVRLASMKQGAILINTARGPLLDEAAVAAALNDNHLGGLGVDVVAVEPIRPDNPLLTAKNCLITPHLAWATLTARQTLMRVTAGNIRAFLAGAPTNVVKAPTV
>NC_011769.1|WP_012611362.1|227130_229419_-|PTS-sugar-transporter-subunit-IIC/EAL-domain-containing-protein
MKAGSAEETVAPSTGGERIMGDAVADNAANRAAPWWRPLAAVFADVTERVADQPVVIAVQRALALVLPLVTVGAFALMVRHTPFPLLRAALDALFGPAWITMGDALVSGTFGIASLAVLCAFSGTMAMVYNQRRGGQFVSPVMSAIVVLACFFVVTNPASDMPWRDMFSMDRGLLLAFMVSVGGAWLFLRLSDVKRLQLPLEAVGHDPVVRDILTVMPAGMLTIVAFGLLRVGLVDSGIPDLHGALRSGMTRPFIEGGNTLGLGLLYTGLSQVLWFFGAHGPNLLFPIEDAIFAPAGAANAAALATGQVPPFVLTKTFFDVFTRMGGSGSTLCLIAAILYASRDSGTRRLALVALLPALCNVNEPLLFGLPLVMNPVYLIPFLLVPLAQTAAAHAATLLHLVPYTLPDVVWTTPPLLNGYAATGSVAGSLMQALNLGLGVALYLPFVRASDALRERHGRHILAELLRTASGSEVGPAGRKCIDRPGEQGRIASSLANDLAAALARNGEVFLEYQPQIRMDGRAHGAEALLRWHHPAYGRIAPPITVALAEDTGIIDRLGMFVLHRACARRVAWTGEVPDGFVMSVNVAPRQLQNPRFDRDVLAVLARTGLAPHLLELELTESTVLLPDARTVAALRRLRAAGVRVAIDDFGMGHASLRYLRDFPVDTVKIDRSLTEASHGDVNEHIVRSIVELARSLDITTLVEGVERREQFERFVELGCLVFQGYLFSRPVRAVQCLEVVSGWGGHAAAPEQAVPDIPKGA
>NC_011769.1|WP_012611361.1|225566_226856_+|phosphomethylpyrimidine-synthase-ThiC
MSILTRNTALAGVLDTHLAALAADEGLAPQTIRDGIEGGTMVLLGNPSHPSLRPLLVGQPSRVKVNANIGTSPLCNNPDREIEKLAAALAAGADTVMDLSIAGDLLAIRKGMLAACPLPLGTVPLYSVAQKYLDKGKDPAGMDPEELFAEIEMQAEQGVDFMTVHCGLTRRGAEWATEGGRVLGIVSRGGSILARWMRKNGKETPLLEQYDRILEIARRHNVTLSLGDGLRPGAGADAGDAAQWEEVMMLGRLAKAGLAEGVQCMIEGPGHVPMHEVEAQIVGIKKLTNNAPLYVLGPLTIDSSPGYDHIAGAIGGAIGVRAGVDFLCYLTPAEHLTLPTIEDVKAGVMASRIAAQAGEVALGRRHALEREAGMSQARMALDWDGMKRCALDPEMVDARRGEHRNEEECAMCGKFCAVKMLRDDPQGTL
>NC_011769.1|WP_041727756.1|224324_225302_-|glycosyltransferase
MPRLFWIGSPFFAQALREEGWQVHAMDFQQVAVFGWQDIVRAAGWEPDVVVVADKSRPPFVLGMESFPCLTVFYCVDSHIHSWYPLYAQAFDVCLMSLRDHIPLVAGRRLPDERIWWTPAFAKDADLPRPTTPEWDLLFVGTVDAARTPARHAFLQRLGQRLPGLHVTRGDYRALYPRGRLLLNYCEHGDLNFRVFEALGCGGCLVTPRIGHGLADLFEDGRDLLLYEPDDIDNLAEVVRTALSDPERCARIAASGLARVDAAHRARHRARDFTKRLRELPQGIVAERRARAHDIRRTHLRLIYLLLAEQMPSPLLREAYLAAAR
>NC_011769.1|WP_012611358.1|222838_223672_+|hypothetical-protein
MFDNATMFMMFILLCFAGLLVMFYFVLRGMEELARGMRDEHAALASGLRTLEARVNELARAQRAAVAGLPPTTPAGAGADAFDEPAGLYHVQYGTGPDARTDTGYGTGDDPLYGLVHEDAESSLPGGLAMDFEEPVELVDRQPDGVSGLGRDSVSGPEYGGTAAAPREADLHAAELPILDLSAPAGGTSGASGVSGASRGRAAGLDTSALDPSSLDAFGDPARAHDAHAPHHSPDTGGTGLLSFGDDEAAYREARERRAESRATRGKGGLPELKLDD
>NC_011769.1|WP_012611357.1|221146_222682_-|radical-SAM-protein
MASSNIRPHLVVADENGEIYDHPDLLMVCRRGHEFALPRPDELMPLPDESELFLLPGRRAVGLDPETGEAVGMDELAVAAFAAPAHTLTAHPAYVSEADAPTLPLFAYGAVGFANGRFYVCAKRVDESNRQVFRGVHRRKVEQTARELMRRYPDNRLMQHLTAKCALTYSCPAARNLCLGRYEAPLPVSRACNARCVGCISQQEAGSRICATPQNRMAFTPTAAEIVEVMRHHARNEVAEPVFSFGQGCEGEPLTEAPLIEEAVRLFRAEGGRGTVNLNSNASLPGAVERIAGAGLTSLRVSLNSAREEPYNRYYRPHGYTLADVRESIATARRNGVFVSLNLLYFPGITDTEPELEALLDMVRTCGVSFIQLRNLNIDPEMYLELLQGIEFGPNMGLVNFRKRLRRECPWLGFGYFNPYLGDRADLEERGVPLPGQWQPTPLADLLRDAPEASPDRNTPDADSSGTAKDLSGVEDTEPDDAHEGLPEGHLEAGPHEGVPDDDDQICGCED
>NC_011769.1|WP_012611356.1|219856_220909_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSEDRSKAYTDAGVDINAGNALVSRIKSIVARTHTNGVISDIGGFGGLFKPDLAGMDEPVLVSSTDGVGTKLKCAFQFGKHDTVGIDLVAMSVNDILVQGARPLFFLDYFATGKLDVDVAASVISGVAEGCRRASCALLGGETAEMPEMYAPGEYDLAGFCVGLVDNTRIVDGSSIRVGDSIIGIASTGLHSNGYSLARKVLAQSGLNGNDPLPGSDRTVAEVLLEPTAIYVDIVRSVMRDFAIKGMVHVTGGGFYDNIPRVLPATVEAHIDFGSWTVPPVFNWLLAQGNLTWPEMLQIFNCGIGYIMIVSPDVCDEVLGRVNAMHAQAWRIGSIGRRRDKAAEQVQVAF
>NC_011769.1|WP_012611369.1|243623_244205_+|tetratricopeptide-repeat-protein
MNRMRGVALCVALAAAAATLLGCSGASMRASSLLEQGRYAEAATAYAQVTTENPSDWRAGVRHGYALYRQGDYAGARAVLAPLMDDWRASEYARFWSGIAAIAARDGDAARAAWSGWSTDRIEVLRAVRPRVDLLRSDELGLGPQAADIYAREAAQANALEEMKRSRDMFRRGMDRGDVPDPALPPSPVEYLP
>NC_011769.1|WP_012611370.1|244494_244860_+|Hpt-domain-containing-protein
MSQPPLPPVFDIDGVLHRLQGDREFLTLLLDTFLPDFADRLTKMQVALGEGRLADLARLAHSLKGASATIGASRLHQRAAALDQACRDEDMATARLEWLGLLEDADLTREQIGAWLTANRT
>NC_011769.1|WP_012611372.1|245543_246170_-|redoxin-domain-containing-protein
MSCPTQQEYPALATVGRPVKPFTLETYDPTEGSFGQISLEKLQQDRKWTVLVFYPADFTFVCPTELADLAERHAALKDMGVEVISVSTDTKFAHLAWRNSERLLENVRYQMAADPTGAVSRYFGVYDEGAGIALRGTFIINPEGTLVGSEVNFYNVGRNAAELVRKMQANKHLRDHPAEACPARWEPGARTLTPSEKLVGKVYEDLIP
>NC_011769.1|WP_155860581.1|246532_247114_-|hypothetical-protein
MAAKALTLPVTLALALTGAVCVSPAGAADTATPQAQQTKKTQEKAPAKSTDKTANAAPQKPATKPTQVAKVTPAKKPVGETIEDVHNKLDTLARAKLRHMNESLRPCQTRKDVVQNGNEFVARYLAVDPDSLSTDVHDAQGPGAKYVGLIVYHEQEYESRAATKEAALTGDFSVVKARRVTEIIRYDKGKWID
>NC_011769.1|WP_155860473.1|247201_248251_-|OmpA-family-protein
MEAPMKFSKILTLVAALMLVCAAPAFAAGQSTLVPKISSFDFFVDYSGSMMMSHEKTGKNKMEMTKKLLSAINAKIPALGYEGGLHTFAPSTEIQPVAAWDKASYEKAIKKLNENEDTFARMTPMGTGLQKATYAKAMKRKAAMIMISDGESNLGSDPVGEAKLLLSTNPGLCLHVISMADKPAGQATLDAIAKLNGCAVTANGPELLANEAALDKFVRDVFYEEKAAPAAAAAAPMDEVIVLRSIQFALNSAKLDATATSILVETAAILKSKKGSVEVAGHTCSLGTDEYNQKLSEARAKSVKDFLVKQGVESSRLITKGYGESKPKYDNSTEETRKLNRRVELSFIK
>NC_011769.1|WP_012611375.1|248394_249816_-|NAD(P)/FAD-dependent-oxidoreductase
MTPSTRYDMIILGGGPGGSRAAFDAAARGLSVALVDRDGLGGTCLNRGCIPTKLLLGATAALPLLETQKKLKGADGHIAFDLPALQQRKDRYVKGTRQALEKRLKAAGIAVYAGEGRVTGERQGDADGELAVVAAQADGTTQETRLGWGTLIVATGSTPASFPGLAADGAAVLDSTALLDVTEAPESLIVVGGGAIGLEMADFFSRFGTRITIVEGMGRLAPTEDAEVGDTLRKVYAREGWTIHNGRKVASLATVDGHAVLRFEDGEELTASKALLAVGRRPASVGIGLEALGTTLRGPGWMQTDEWLRAAPHVYAIGDVNGRTLLAHAADHQARYAVRHACGDTAAPYDAGVMPACIYGHLEAMRVGPTAEELKNAGFSPRVSRSMLIANPIAQAYGTTQGFIKIVWVDGRIRGVTAVGHGVSHLVTLAAVLAGGSGTATGWTAHDAGNVIFAHPTLDEALEAAIEAPQELA
>NC_011769.1|WP_012611376.1|249805_251251_-|glycine-dehydrogenase-subunit-2
MKTAFAASVPGRNACLPAQPKMHAADMLPANLLRASRPALPELGELDVVRHFTRLSRLNFGVDSNFYPLGSCTMKYNPKFTEQVAALPGFTRLHPLMAQLKGAGQYTQGALEVMWETERLLCEITGMRAFTLHPMAGAHGELTGVMLIAAYHKDKGNRKTKVICPDSAHGTNPASAALAGYEVVNIESKDGMVDPDALEAALDDDVAALMMTCPNTLGLFENHLPRIVEKLRAVDALLYYDGANLNAILGKMRVGDVGFDVVHLNLHKTFATPHGGGGPGAGPVGVSERLVPYLPISRVEKLHDGRYYLNYDHPKSIGFMAPFYGNFGVLLKAYAYILRLGGEGLERVSEYAVLNANYLRKRLEKVLEIPHDRICMHEFVASACNHAECGIRALDVAKALLDKGYHAPTIYFPLIVKECMMFEPTETESRQTLDEFADDLIAILESAAQNPDALHAAPVTTPVRRLDETAAARNMVLTDDA
>NC_011769.1|WP_012611377.1|251247_252579_-|aminomethyl-transferring-glycine-dehydrogenase-subunit-GcvPA
MPFIPHSPEEVREMLSVIGVQSIEDLFVDIPAEMRPRSFELPLGLSEMQVLAKMEEMAARNRTDVVSFLGGGFYSHHIPAAVDALVSRGEFYTAYTPYQPEASQGTLQAIFEYQTAVCRLLDMDCANASVYDGGSAIFEAMMMAVRATKRRKLVIDEAVSPIWRTMLASYTSNLSLDLVTVPQVDGRSDMAAMKAAVDTGCAAVVVQNPNFFGVVEDFTDLFAHAKSQKAASVISVYPVMQSVLKTPGEMGADIAVAEGQSLGQPLSFGGPYLGIMTCTKDMVRQMPGRIVGRTNDTEGRTGYVLTLQAREQHIRRAKATSNICSNQALCALRTLVHLCLLGPEGLIRTAELSMERARYAMERLTAIAGVRPLNTAPFGNEFAVRLPIPAFEAVDRLTARGYVPGFPVGRYYAGMDDVLLVACTEKNSFEQVGILAEMLGGIL
>NC_011769.1|WP_012611378.1|252595_252979_-|glycine-cleavage-system-protein-GcvH
MSIPADLLYTDTHEWVRIEGDEAVIGITQFAQEQLGDLTFVDLPAVGDTLATGQEMGSVESVKAASELYSPLAGTVSAVNDALSGAPELVNQSPYTDGWMVRVKLSATPEGLLSAADYEAVVAREAH
>NC_011769.1|WP_012611379.1|253294_253708_-|response-regulator
MKFLVVDDDFDSRRLVQKILHPYGYVDIATDGEEGVQAFASALKDGEPYDVVTLDILMPNADGQQALREIREIEKEEGVAPEKAVKVIMISGLDDSQEVHDAFFLGDAVSFIVKPIRRQLLLDEIEKLGVHLEKTEK

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Crispr_ID: NC_011769_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011769_2

1907947-1908051

Orphan

Consensus_repeat	Method
GCGAGCGGCGCTTGCCGCAGGGTCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011769_2

>merge|NC_011769|2|1907947-1908051|CRISPRCasFinder
GCGAGCGGCGCTTGCCGCAGGGTCCGCAGGCGCCGCAGGGGCCGCAGGGGCCGCGAGCAGCCGGAAGTAGGGAAGATAGCGAGCGGCGCTTGCCGCAGGGGCCGC

>NC_011769|2|2|1907947-1908051|CRISPRCasFinder
GCGAGCGGCGCTTGCCGCAGGGTCCGC	AGGCGCCGCAGGGGCCGCAGGGGCCGCGAGCAGCCGGAAGTAGGGAAGATA
GCGAGCGGCGCTTGCCGCAGGGGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011769.1\|WP_012612681.1\|1917012_1918326_+\|dissimilatory-type-sulfite-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|273948
NC_011769.1\|WP_012612673.1\|1908196_1908547_-\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_012612664.1\|1893515_1895453_-\|biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
NC_011769.1\|WP_012612667.1\|1899557_1900877_-\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235976
NC_011769.1\|WP_012612666.1\|1897637_1899203_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NC_011769.1\|WP_012612668.1\|1901069_1902434_+\|potassium-transporter-TrkH	unknown	unknown	gnl\|CDD\|273349
NC_011769.1\|WP_012612671.1\|1904583_1905237_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NC_011769.1\|WP_012612669.1\|1902470_1903136_+\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NC_011769.1\|WP_012612674.1\|1908552_1909158_-\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_012612675.1\|1909311_1911069_-\|glycosyltransferase-family-9-protein	unknown	unknown	gnl\|CDD\|340821
NC_011769.1\|WP_012612665.1\|1896368_1897514_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NC_011769.1\|WP_012612677.1\|1912567_1914397_-\|histone-lysine-N-methyltransferase	unknown	unknown	gnl\|CDD\|163684
NC_011769.1\|WP_012612676.1\|1911303_1912083_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NC_011769.1\|WP_012612678.1\|1914399_1915182_-\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_012612670.1\|1903358_1904237_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NC_011769.1\|WP_012612682.1\|1918344_1919490_+\|dissimilatory-type-sulfite-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|131121
NC_011769.1\|WP_012612663.1\|1891929_1893120_-\|saccharopine-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|224662
NC_011769.1\|WP_012612679.1\|1915394_1916093_-\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_012612662.1\|1891065_1891599_-\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_012612680.1\|1916223_1916481_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011769.1\|WP_012612681.1\|1917012_1918326_+\|dissimilatory-type-sulfite-reductase-subunit-alpha	gnl\|CDD\|273948	TIGR02064, Sulfite_reductase_dissimilatory-type_subunit_alpha, sulfite reductase, dissimilatory-type alpha subunit. Dissimilatory sulfite reductase catalyzes the six-electron reduction of sulfite to sulfide, as the terminal reaction in dissimilatory sulfate reduction. It remains unclear however, whether trithionate and thiosulfate serve as intermediate compounds to sulfide, or as end products of sulfite reduction. Sulfite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulfur cluster prosthetic center. Found in sulfate-reducing bacteria, these genes are commonly located in an unidirectional gene cluster. This model describes the alpha subunit of sulfite reductase. [Central intermediary metabolism, Sulfur metabolism].	0
NC_011769.1\|WP_012612664.1\|1893515_1895453_-\|biosynthetic-arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
NC_011769.1\|WP_012612667.1\|1899557_1900877_-\|malate-dehydrogenase	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NC_011769.1\|WP_012612666.1\|1897637_1899203_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NC_011769.1\|WP_012612668.1\|1901069_1902434_+\|potassium-transporter-TrkH	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	5.47777e-95
NC_011769.1\|WP_012612671.1\|1904583_1905237_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	3.71418e-51
NC_011769.1\|WP_012612669.1\|1902470_1903136_+\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	3.35168e-43
NC_011769.1\|WP_012612675.1\|1909311_1911069_-\|glycosyltransferase-family-9-protein	gnl\|CDD\|340821	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins. Lipopolysaccharide heptosyltransferase (2.4.99.B6) is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family also contains lipopolysaccharide 1,2-N-acetylglucosaminetransferase EC 2.4.1.56 and belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	2.83892e-32
NC_011769.1\|WP_012612665.1\|1896368_1897514_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	4.37968e-61
NC_011769.1\|WP_012612677.1\|1912567_1914397_-\|histone-lysine-N-methyltransferase	gnl\|CDD\|163684	cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	0
NC_011769.1\|WP_012612676.1\|1911303_1912083_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	7.97175e-60
NC_011769.1\|WP_012612670.1\|1903358_1904237_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.84931e-17
NC_011769.1\|WP_012612663.1\|1891929_1893120_-\|saccharopine-dehydrogenase-family-protein	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	1.02645e-159
NC_011769.1\|WP_012612682.1\|1918344_1919490_+\|dissimilatory-type-sulfite-reductase-subunit-beta	gnl\|CDD\|131121	TIGR02066, Sulfite_reductase_dissimilatory-type_subunit_beta, sulfite reductase, dissimilatory-type beta subunit. Dissimilatory sulfite reductase catalyzes the six-electron reduction of sulfite to sulfide, as the terminal reaction in dissimilatory sulfate reduction. It remains unclear however, whether trithionate and thiosulfate serve as intermediate compounds to sulfide, or as end products of sulfite reduction. Sulfite reductase is a multisubunit enzyme composed of dimers of either alpha/beta or alpha/beta/gamma subunits, each containing a siroheme and iron sulfur cluster prosthetic center. Found in sulfate-reducing bacteria, these genes are commonly located in an unidirectional gene cluster. This model describes the beta subunit of sulfite reductase. [Central intermediary metabolism, Sulfur metabolism].	6.18923e-169

>NC_011769.1|WP_012612671.1|1904583_1905237_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MTRRHPLLYPTTILMLCALLLAALPAAASEAPTKRGRASWYSDDLHGKKTASGESYDMNALTAAHKTLPLGTVVRVTNLSNGRSVLVTVNDRGPYRGNRDIDVSYSAAKQLGIVKPGSAAVRIEVLGDAKGRPLDPDSAYFVRIRSYASKAEAERLVRKLEREGEAAVRVRARTENGRKRWMVCVGPFRDFDDARALRRHLMQRHADIDIVADRARD
>NC_011769.1|WP_012612670.1|1903358_1904237_-|DMT-family-transporter
MLLYAKLMLATVFWGGTFVAGRIAAAHAGPFSAAFLRFAMATGLLFWYVRRREGALPRLTSPGMHGWAGVLLLGATGVFAYNALFFTGLATVPASRAAVIVTNNPIAIAVGAALFLGEPLSRRKLAGILLSVGGAVIAITRGNPLTLFSSALSWGDVALLGCLASWAAYSLLGKVVMRALSPLAAVTWSCAVGTVMLLPFALHEGLWTALPEYPAALWIAAAYLGVFGTVLGFTWFYEAVKEIGAGRAGVFINFVPLTAIVCAWAMLGEALPVSLLLGAALVTCGVFITNRA
>NC_011769.1|WP_012612669.1|1902470_1903136_+|TrkA-family-potassium-uptake-protein
MVNVAKKMEIGIVGLGKFGLQLGRTLTEMGHTVVGLDTGEGRVRLAQDVLAQVYQANAADIAVLQQLRFQDLDIVFVSVGDSMETSLLVVLNLQEMGARKIGVKAASIEHRKVLTRLGVDLVILPEHDVATHVAHRLANPGMLDLLPLGGGVLVQELMVDKWAGRTLLDLKLVNDYGVMVVAVKPAGGKEYRFVPQAHETLERGDALVVIGKQEDVLRLVP
>NC_011769.1|WP_012612668.1|1901069_1902434_+|potassium-transporter-TrkH
MLHRRLLSPLILPVYSFAATILAGAVLLYLDISHAPSAGEAGISFVDALFTATSAVCVTGLSVVDTGTTFSRAGQWIILALIQLGGLGIMTYSSLLLFLLRRRVSLTDRLAVGQALMHDPSFHLGRFLYRLVRTILCIELAAACLLYIFAPQGMGAFGALFHAVSAFCNAGFGLRPDNMMPWQEHTGVNLVIMFLIVVGGIGFSVIDELLGAARTRLTGKPYRPLSRHTRLVLSTTAFLIVAGAALIWLAEYLSDYTGLSPAGLVLPAFFQSVTCRTAGFNTMDIGRLTDFTLMVMICLMFVGGSPGSCAGGIKTTSFRVLAGFVEMQLRGRRQNVLLGRAVDAPTQAKALTLFLFAIIVVTVGTMVLSLTEGGIAPHTHGQFEQLDLMFEVVSAFGTVGLTTGVTPHLSVPGKLLISFLMFIGRIGPVWLLATLQHLQSEPKFRWPEVDYPIG
>NC_011769.1|WP_012612667.1|1899557_1900877_-|malate-dehydrogenase
MALFTKDEALRYHSCGHPGKVEVVPVKPCATQKHLSMAYTPGVADVCRAIHADVSLGYDYTNKGNLVAVVSNGTAVLGLGNIGPLAGKPVMEGKGVLFKIFADVDVYDLSIDQKDPKKIIEFVKMLEPTFGGINLEDIKAPECFEVEQTLIEQMDIPVFHDDQHGTAIISGAGLIAALDLTNRKPEDVKLVISGAGAAAIACTKFFESFGVQRKNVFMFDSRGLIHKGRTDLNAQKAEFAQEQDHGSLADVMRGADCFLGLSVGGMVTQDMVRSMAPNPIIFACANPDPEISYEDARAARADVVMATGRSDYPNQINNVLGFPFIFRGALDTRASAINEEMKLAAARALAALAREPVPADVLAAYGLSELSYGVDYIIPKALDPRVIEWVAPAVAEAAMRTGVARRQLDLAAYKVELRERMQAARARIGQFIDTYGLDF
>NC_011769.1|WP_012612666.1|1897637_1899203_-|leucyl-aminopeptidase
MDIRFQVGGPAQWRADAVIVFLFEGEALADAAPELLEAAPWLGIAPAVRDFRGRKDEVAVFHGHPDLAVPRVIAAGLGKREAFAATAPAGLRAAAGAALRRCRELKIETVAVDAVALARVVETGGDAPAGTPSWSPAEEAVCGALLGLYRYDRFKTNGNGNGGAEAAEDARFEPRWLGLLCAEASVPDDLHAAARRGEAAAAGVALARDLVNGPPNFVTPGYLAEQAVAIAKKYGMQARSLGRAELVEMGMGAFASVFRGAEEEPRLVVIEHAPKGTEDQKPLVFVGKGITFDTGGISLKPPAKMHEMKGDMAGAAAVLGLFEALGRSDVPRRVVGIMPCTENMPDGRATRPGDIVTTLSGKTVEVINTDAEGRLVLCDAMTWAQREYAPEVVVDLATLTGACVVALGMEVAAVFATDDALSGRIRAVGDVVGDRFWPLPLWDMYFENLKSDVADIANVGPREGGAVNAALFLKQFVDKGVRWAHLDIAGPAYTAKKTSTCPGGGTGFAVRTLLELVRGGV
>NC_011769.1|WP_012612665.1|1896368_1897514_+|GGDEF-domain-containing-protein
MFDKNRLHRCMNALLANGLQDDADPETARVTGVANLFYGVTALFSAVMGVLDFMQDQGTLALFLLAMLALALFGLFWVGRTGRHVLPSTALVLALFTLSLYMVSHGGVEGSGFVWLFIFPPVVMLTFGLSIGILLMGALLLGVGAILFLPGDPFLYADYSQAFRIRYMLALLCCGIFAGLAEYTRRHTQRLLILLTQQLAESARTDELTGLANRRALCERLEYEQVRARRTGRPLSIAICDIDHFKSVNDCYGHQCGDLVLQSVAGLLHDNLRHQDTICRWGGEEFLLLLPETDEAGAARLAEKLRSLVEAMEYSYHGIPVSVTLSFGVHTCGPEGDIDYHIRKADQKLYLAKEQGRNRVFAGEVPDIFLPEGLMLDEEEA
>NC_011769.1|WP_012612664.1|1893515_1895453_-|biosynthetic-arginine-decarboxylase
MYEVRELARNRTLQQWSVEDSAELYGIRNWGAGYFDVAQSGDVVVYPFGDNRGPAVSIPEIIRGMRERGYDMPVLLRIENILDSQITSLHQSFRKAIGSLGYKGEYRGIFPIKVNQQQQVVEKIAQFGSRYHHGLEVGSKAELIAAVSQLRDHEACLVCNGYKDEEFIDLGLHAVRMGYKCFFVLEMASELPLILERSKCLGVRPLIGVRAKLSVKAGGHWTDSGGERSTFGLTTAQIVDVVDQLKDHDMLDCFQLLHYHLGSQVPNIRDIRAAVMEACRIYGGLVAEGAAMGYLDLGGGLAVDYDGSHTNYVSSRNYSLDEYCADIIEAVMNILDEEGIAHPHIVTESGRATVAYYSMLLFNILDVSRVEIGNLPDILPDDCPEPVRNMREALAGLTLRNLQECYNDAVYYRDEVRQQFLTGRITLRERTLGERYFWAIMKRIAQEKQKLKHVPKDLAEIDVALADIYYGNFSVFQSLPDSWAIDQLFPVVPLHRLNELPSRQGILSDITCDSDGRIDHFIDPQGVKGTLDLHPLKDGEEYYLGVFLVGAYQETLGDLHNLLGDTNVVSVRVHEDGSYEFVRELRGDSVADILSYVEYDPRRIIDDIREAAEQAVREGRITPSDRYRVMQAYEDGLRGYTYFER
>NC_011769.1|WP_012612663.1|1891929_1893120_-|saccharopine-dehydrogenase-family-protein
MARVLIIGAGGVGGVVVHKCAQVPSVFSEIMLASRTKSKCDALAADVKARTGRTIETARVDADNVPELVALIRAYKPDMVLNIALPYQDLTIMDACLETGVHYLDTANYEPLDEAKFEYKWQWAYQERFEKAGLMALLGSGFDPGVTNVFCAYVMKHLLDEVHVLDIIDCNAGDHGHPFATNFNPEINIREVTARGRYWERGEWVETDPLSWSMNYDFPDGIGPKKCFLMYHEELESLVLNLKGLKRARFWMTFSDNYLNHLKVLENVGMTRIDEVEHDGKKIVPIQFLRALLPDPASLGPRTKGKTCIGCLMQGVKDGKPKTVYIYNVCDHQECYREVGSQAISYTTGVPAMIGAMMMVTGKWSGKGVYNMEQLDPDPFMDALNKHGLPWVVVEK
>NC_011769.1|WP_012612662.1|1891065_1891599_-|hypothetical-protein
MNLLPQDVLVMLKLSVARRTRWTYDQLGAALGMSMSMVHSSIRRATQARLYDEHRRRPVRAALEEFLVHGVKYAFPPDIGTVTRGVPTAFAAPALKGEFLHDAGAEAAYVWPHPEGEQRGVSLSPLYKSVPAVALRNARLYEALSLLDAIRIGRVREQQRAAELLKGMLRSDDAPTA
>NC_011769.1|WP_012612673.1|1908196_1908547_-|hypothetical-protein
MPDSLSLLDMALQLGERELGALAAGDVEAADSASRERAELVEMAWSRRNPAALNDLRDKLLRLQCLQGRLTEEARRLHDNIRSQLQQTRRESQRLTGYRQATRSTPLTITLGRGQV
>NC_011769.1|WP_012612674.1|1908552_1909158_-|hypothetical-protein
MIVIDGRQADIKLENFANLEEILVKVMEGSYLENRVVTDVLVNDEAFSEIYPHQAEDIEQRDIRSVEIRSMPVGEMAVNITRELYKVVQVMTDGARQVAGLFRQADDAEALDMFQDLLEVTRDFMGMIGVLRNEFSLRTTKDFSDNVERFSDQLGEMTEVLENEDWILLADLLEYEFLPACENWKKVIQALREDIRQASKG
>NC_011769.1|WP_012612675.1|1909311_1911069_-|glycosyltransferase-family-9-protein
MNLLLVNLTRFGDLLQTQPVVHGLRAQGHRVGLVCLENFAGAAALLEGVDHVAALPGSALLAGVQPGGDWRACTAGLMTWAERLRGAYAHDAVLNLTATLGGRLLGRLLAGNGDEKDHGGDLRGFGLDPFGFGVNADPWSAFLQASTRQRGCSPFNLVDLFRMAAGVGNVDPVYQLRAPAPDALAEAGARLAQAAPPDHAGYVAMQLGASEERRRWPVAHFAALAARLWRELRLVPVLLGAGGERTLGERLRAALAEEAETGGTGGEAGATGPVPCIDLIGATSLPQLAATLRHMRMLVTNDTGTMHLAAGLDVPVLAIFLATAQPWDTGPYRQDCCCLEPALDCHPCPFGTPCPHGERCRRVISTGTVFGLARAHLTTGQWPQSDATAGATPDAHREARVWRTLREADAGRVTANAPAMAMPGCGFMVLVSLSGHEADDRTRWIRLQRHFYRQFLDLPRMQPADPAAARPANPILAPHGHCALSETLRARAADELRQADALLHLMGEQGGLLRVRPSDMAKSRFLGTVSRVQALWDNSALFNVLGHLWLCESQGAGGSLDSVLALAAAYRALVRVWLDHLSPSS
>NC_011769.1|WP_012612676.1|1911303_1912083_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MPHLRPCQTCFAPSRLIVPTVLLLLAALLMAGCGFGPRRISTPPSDQSVKYPKGQPQGPRAKPYTVLGKTYHPLLSAHGFSEEGIASWYGKDFHGRKTANGEIYDMYGLTAAHKLLPFNTVVKVTNLQSGRSTTVRVNDRGPFVGDRIIDLTNTAANQIGMLGPGTARVRVETVGDVPGLQDGDMTGRFYVQVGAFSNKDNASRLVTRLQGQGWNARMYWADMVQFWRVQVGPWGTLSEAERMREKLKGDFAVNFVVAD
>NC_011769.1|WP_012612677.1|1912567_1914397_-|histone-lysine-N-methyltransferase
MSLLHLNRASSRVRLENRDDPELYREIFPYSKISRVEFDDIFLMPRPAEPMFITDTTFRDGQQARPPYTVKQIVHIFDMLHRLGGRSGLIQASEFFMYSEKDRKAIDACRAKGYKFPRVTGWIRANVNDLKIARDMEFEEVGLLTSVSDYHLYLKLGLDREKAMDNYLRVVEQALEWGITPRCHFEDITRADIHGFCLPFARKLMDLSKQSGQPVKIRMCDTMGYGVPYPGATLPRSVPRIVRALTDEGGVPGQWLEWHGHNDFHKVLINGATAWLYGCSGVNCTLLGFGERTGNTPLEALVIEYVSLTGDDDAADTRVINEIAEYFEKELDYRIPDNYPFVGKDFNATSAGIHVDGLAKNEEIYNIFDTRKILNRPVPIIITDKSGRAGVAYWINQYLGLPEDRHVSKKHPAVGKIYTKIMDAYEKGRNTSFSNKEMKALVRRFMPELFASEFDQIKKLAGELSAHLIIKLAQECQITGLGGEDKYPCMRDFVREYPFIQYLYLTDKEGKLLSAAITDPAYKSKYEQLPLGFDFSNRAWFIRPMQTGELHITDVYQSQFTSQLILTVSTAVTDDKDEITGVIGADIQIEQLLRQAEAIEDVVDSDSDD
>NC_011769.1|WP_012612678.1|1914399_1915182_-|hypothetical-protein
MSRRWVEANLAEFARDVMRDFCMASVVLEGQFHRFDEAGAVSFPVMRDLLGEMMNKGLLWRLKDTAHHLFRNDPAQDPVAPMLDWAVGYAFHECVKLKEDAYQHQHYAPQYRALREQDMGEEVRAIVEPLASMLAQTRESMEREIRRIRYILGRIRRLMCLYYAAHGGNRLLARLLFDRDELVRSVFGEEYDLLLQGLYGDKPERMFIQAGESLLDGGRPEDALRAAHAAVALASGCQRAHRLVAEAEQRIDQTPRRRAI
>NC_011769.1|WP_012612679.1|1915394_1916093_-|hypothetical-protein
MHEVSLGATLRDYLTGQGVDHTTYEDLRQALARLLVEELGHPHGLVEPRVRVRFDVPSASANVSPSLVPPSPEAPRGFEGADRPVAPVAPVAPVANDPGDSEDSDDHDEGCRVVDLTLRDDDGSPLCIVLFCPGAPGTYARESVAAARLFPGGPAPLVAVTDTRAALLMAAVDGAVLGEGMRALPRRDALRRLAAEHPCPPLTPERAAGERRILGAYTSFLKRCCGEDVCLL
>NC_011769.1|WP_012612680.1|1916223_1916481_-|hypothetical-protein
MQDDLGLYYYPDPNDKRTRVYVRSSGGSVEFRLWRADRPEVWERHEWVPLEIIRHAAGMYRDMGRETDPLKLYDESVARALLKAN
>NC_011769.1|WP_012612681.1|1917012_1918326_+|dissimilatory-type-sulfite-reductase-subunit-alpha
MAKHATPKLDQLESGPWPSFVSDIKQEAAYRAANPKGLDYQIPVDCPEDLLGVLELSYNEGETHWKHGGIVGVFGYGGGVIGRYCDQPEQFPGVAHFHTVRVNQPAAKYYHTDYLRQLCDLWDLRGSGLTNMHGSTGDIVLLGTQTPQLEELFFELTHKMNTDLGGSGSNLRTPESCLGMSRCEYACYDTQACCYALTMEYQDELHRPAFPYKFKFKFDGCPNGCVASIARSDFSVIGTWKDDIKIDQAAVKAYVGGELKPNAGAHSGRDWGKFDIMAEVVERCPSKCISWNGSALSIKTSECVRCMHCINTMPRALRIGDERGASILVGAKAPVLDGAQMGSLLVPFVDASEPFDEIKGVVEKIWDWWMEEGKNRERLGETIKRLSFQKLLEVTEIDPVAQHVKEPRSNPYIFFKEEEVPGGWDRDITEYRKRHQR
>NC_011769.1|WP_012612682.1|1918344_1919490_+|dissimilatory-type-sulfite-reductase-subunit-beta
MAFISSGYNPEKPMANRITDIGPRKHDSFFPPFIAKNFGKWLYHEILEPGVLVHVAESGDKVYTVRVGAARLMSITHIREMCDIADKHCGGFLRFTTRNNVEFMVDTEAALKALKEDLASRKFAGGSYKFPIGGTGAGVSNIVHTQGWVHCHTPATDASGPVKAIMDEVFADFQSMRLPAPVRISLACCINMCGAVHCSDIGVVGIHRKPPMIDHEWTDQLCEIPLAVSACPTAAVRPTKVEIGDKKVNSIAIKNDRCMYCGNCYTMCPALPISDGEGDGCVIMVGGKVSNRISMPKFSKVVVAYIPNEMPRWPTLTAQIKHIIEVYAANANKYERLGEWAERIGWESFFKLTGLEFTHHLIDDFRDPAYYTWRQSTQFKF

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Crispr_ID: NC_011769_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011769_3

2286218-2286326

Orphan

Consensus_repeat	Method
GATCGGGCGCGCATGCCGCGCCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011769_3

>merge|NC_011769|3|2286218-2286326|CRISPRCasFinder
GATCGGGCGCGCATGCCGCGCCGCGGGCCAGTACGGATGACGAGCGGGCGCGGCCTGGACGTGCCCAATGGATTATAGAGTTTCGATCGGGCGCGCATGCCGCGCCGCG

>NC_011769|3|3|2286218-2286326|CRISPRCasFinder
GATCGGGCGCGCATGCCGCGCCGCG	GGCCAGTACGGATGACGAGCGGGCGCGGCCTGGACGTGCCCAATGGATTATAGAGTTTC
GATCGGGCGCGCATGCCGCGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011769.1\|WP_012612973.1\|2268426_2269359_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NC_011769.1\|WP_155860536.1\|2296433_2297573_-\|DUF362-domain-containing-protein	unknown	unknown	gnl\|CDD\|377193
NC_011769.1\|WP_155860669.1\|2284902_2286168_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|223325
NC_011769.1\|WP_012612985.1\|2290168_2291230_+\|phosphotransacetylase-family-protein	unknown	unknown	gnl\|CDD\|223926
NC_011769.1\|WP_012612984.1\|2288797_2290012_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NC_011769.1\|WP_012612988.1\|2294386_2296210_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NC_011769.1\|WP_012612979.1\|2277835_2281483_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NC_011769.1\|WP_012612981.1\|2283485_2284871_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273050
NC_011769.1\|WP_012612990.1\|2297569_2298598_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|238089
NC_011769.1\|WP_012612992.1\|2300699_2302052_+\|radical-SAM/SPASM-domain-containing-protein	unknown	unknown	gnl\|CDD\|275116
NC_011769.1\|WP_012612987.1\|2292000_2294151_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|224062
NC_011769.1\|WP_012612976.1\|2270875_2271508_-\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_012612975.1\|2270194_2270572_-\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_012612980.1\|2281605_2283315_+\|L-lactate-permease	unknown	unknown	gnl\|CDD\|224535
NC_011769.1\|WP_012612978.1\|2275665_2277165_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NC_011769.1\|WP_012612986.1\|2291366_2291996_+\|lactate-utilization-protein	unknown	unknown	gnl\|CDD\|376839
NC_011769.1\|WP_081437379.1\|2298999_2300226_-\|acetamidase/formamidase-family-protein	unknown	unknown	gnl\|CDD\|376984
NC_011769.1\|WP_012612983.1\|2286533_2288648_+\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
NC_011769.1\|WP_012612974.1\|2269361_2270138_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379276
NC_011769.1\|WP_012612977.1\|2272084_2275660_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|237526

Protein	Function_ID	Function_description	E-value
NC_011769.1\|WP_012612973.1\|2268426_2269359_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	5.07059e-47
NC_011769.1\|WP_012612992.1\|2300699_2302052_+\|radical-SAM/SPASM-domain-containing-protein	gnl\|CDD\|275116	TIGR04311, Radical_SAM_domain_protein, putative metalloenzyme radical SAM/SPASM domain maturase. This model describes a family of radical SAM/SPASM enzymes largely from the deltaproteobacteria. The family is most closely related to radical SAM enzyme family regularly in archaea in the vicinity of tungsten-containing oxidoreductases. A single member of the family in archaea may correspond to multiple tungsten enzymes, e.g. five in Pyrococcus furiosus. Therefore, the lack of a conserved gene neighborhood for members of this family in deltaprotebacteria suggests members may be involved in the maturation of multiple metalloenzymes.	0
NC_011769.1\|WP_155860669.1\|2284902_2286168_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	6.81996e-70
NC_011769.1\|WP_012612987.1\|2292000_2294151_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	1.04668e-154
NC_011769.1\|WP_012612984.1\|2288797_2290012_+\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NC_011769.1\|WP_012612988.1\|2294386_2296210_+\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.93123e-64
NC_011769.1\|WP_012612979.1\|2277835_2281483_+\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NC_011769.1\|WP_012612981.1\|2283485_2284871_+\|FAD-binding-protein	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	2.70764e-173
NC_011769.1\|WP_012612990.1\|2297569_2298598_-\|sulfurtransferase	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	2.37097e-18
NC_011769.1\|WP_155860536.1\|2296433_2297573_-\|DUF362-domain-containing-protein	gnl\|CDD\|377193	pfam04015, DUF362, Domain of unknown function (DUF362). Domain that is sometimes present in iron-sulphur proteins.	3.53613e-55
NC_011769.1\|WP_012612985.1\|2290168_2291230_+\|phosphotransacetylase-family-protein	gnl\|CDD\|223926	COG0857, Pta, BioD-like N-terminal domain of phosphotransacetylase [General function prediction only].	3.0157e-40
NC_011769.1\|WP_012612980.1\|2281605_2283315_+\|L-lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	3.26001e-131
NC_011769.1\|WP_012612978.1\|2275665_2277165_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.55474e-149
NC_011769.1\|WP_012612986.1\|2291366_2291996_+\|lactate-utilization-protein	gnl\|CDD\|376839	pfam02589, LUD_dom, LUD domain. This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate.	8.44447e-34
NC_011769.1\|WP_081437379.1\|2298999_2300226_-\|acetamidase/formamidase-family-protein	gnl\|CDD\|376984	pfam03069, FmdA_AmdA, Acetamidase/Formamidase family. This family includes amidohydrolases of formamide EC:3.5.1.49 and acetamide. Methylophilus methylotrophus FmdA forms a homotrimer suggesting all the members of this family also do.	3.19504e-56
NC_011769.1\|WP_012612983.1\|2286533_2288648_+\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
NC_011769.1\|WP_012612974.1\|2269361_2270138_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379276	pfam13578, Methyltransf_24, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.11982e-16
NC_011769.1\|WP_012612977.1\|2272084_2275660_+\|PAS-domain-containing-protein	gnl\|CDD\|237526	PRK13837, PRK13837, two-component system VirA-like sensor kinase.	2.09443e-71

>NC_011769.1|WP_155860669.1|2284902_2286168_+|4Fe-4S-dicluster-domain-containing-protein
MLQELDDQMVGCMKCGMCQAVCPVFAETMKEADVTRGKIALLENLAKEMIHDAAGVQEKLNKCLLCGSCGANCPSGVKVMDIFLRARVIVNTYMGLSPVKKAILRGMLTKPALFNALLDLGSKFQGIFTSKVDDLLGSSCSKVLSPVIGDRHFVGLAKQSLHSKIKALDTPAGKSGKRVAFFPGCLGDKMFVSVAEACLKVFEHHGVGVYMPEGQACCGIPAISSGDRVAYDKLVKINLDLFSKGGFDYLVTPCATCTATIKEIWPKLMDEYPATMRDQIRALHDKVMDVNQFVVDVLGVKPEAPAKGGVKVTFHDSCHMKKSLGVTSQPRALIGMNPKYELVEMAECDRCCGSGGSFNLYHYDLSKQIGERKRDNILATGAQIVSTGCPACMLQMTDMLSQHGAKVAVKHSIELYADSLR
>NC_011769.1|WP_012612981.1|2283485_2284871_+|FAD-binding-protein
MPSAALIKEFEAVVGKDNVFTSEADRQSYSYDSAVLEAVVPALVVRPTTTEQLGKVVRLCNENGNPITVRGAGTNLSGGTIPDPREGIVILTNSLNRIIEINEEDLYAVVEPGVVTAKFAAEVAKRGLFYPPDPGSQAVSTLGGNVAENAGGLRGLKYGVTKDYVMGIEFFDVNGGLVKTGSRTVKCVTGYNLAGLMVASEGTLGVFSNIVLKLVPPPQASKAMMAVFDDVNKASEAVAGIIAAHVVPCTLEFMDQATIRYVDDFTKAGLPRDAQAILLIEVDGHAGQVAEDAEKVEKVLNKVGATEIKVAKDAAEKFKLWEARRNALPALARAKPTTVLEDATVPRSKIPAMVKAINDIAAKYNISIGTFGHAGDGNLHPTILCDRRDKHEFERVEHAVDEIFDVALSLHGTLSGEHGIGMAKSKWMEKETSKATIEFSRNMKRAIDPKYILNPGKIIGA
>NC_011769.1|WP_012612980.1|2281605_2283315_+|L-lactate-permease
MSLELLALVALLPILVALVLMVGMRWPSTRAMPLAWLVCVLGAIGAWNLPAGYIAALSLQGVVTAIGVLIIVFGAIIILYTLKYSGGMETIQYGMQNISRDKRIQAIIIGYMFAAFIEGAAGFGTPAALAAPLLLSLGFPPLAAAVICLVFNSFCVSFGAVGTPILIGLKFLAPLVKDAAAANPGLNFTDFGSFAKVIGQWVTLMHGPMIFILPIFMLGFLTRFYGQKKSWAEGFAAWQFCVFAAVAFIVPYLTFAWLVGPEFPSLIGGLVGLGIIVAGAKKGFCVPKETWDFGPQSTWEAEWTGTIATSTNTEFKPHMSQFMAWLPYILIGVILVLTRIPELGLKGWMSAQKLPINDILGYKGVSASIDYLYLPGTIPFTLVALLTIMLHGMKGDAVKKAWSESFSKMKAPTIALFAAVALVSIFRGSGVADAALNPNNYPSMPLAMAKTVAAFAGNAWPMLASYVGGLGAFITGSNTVSDLLFAEFQWGVAQQLSLPRQIIVAAQVAGGAMGNMVCIHNIVAVCAVTGLIGREGMILKRTFWPFALYGIVVGIIASILCFGAYSNLF
>NC_011769.1|WP_012612979.1|2277835_2281483_+|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MAKKMKTMDGNTAAAYVAYALSDTSAIYPITPSSNMGESADEWAAQGKKNLFGQTVSVRQLQSEAGAAGAVHGSLAAGALTSTFTASQGLLLMIPNMYKIAGELLPGVFHVSARALASHALSIFGDHQDVMAARQTGFAFLNSNSVQEAMDMALVAHLAAIESSVPFCHFFDGFRTSHELQKIEVIEYDDMKKLVNWEKVEAFRQNAMNPEHPHIRGTAQNPDIYFQAREACNSFYNAVPGIVSNYMKKVGEITGRSYKLFDYVGHPEAERVIIAMGSACETIEEVVNFLNAKGERVGLVKVRLYRPFSIDHMLSVLPATADTITVLDRTKEAGSLGEPLYLDVCTAFMERGEMPKLLAGRYGLGSKEFTPAMAKAVYDNMKVVGPKNHFTVGIIDDVTDTSLEVTEGVDTVPAGTVQCKFFGLGADGTVGANKQAIKIIGDNTGMYAQGYFAYDSKKSGGFTVSHLRFGNSPIQSTYLVNSADYIACHKSAYVHQYDVLDGIKTGGTFVLNSHWNSVEEMEKELPASMLRTIARKKLKFYNVDAVKVATEVGLGGRINMIMQTAFFKLSSVIPFEQAVALLKDSIHKAYGKKGEKIVAMNVAAVDKAIEAVTEIKYPESWATAADAAPVANADPDFITNVVRPILAQQGDKLPVSAFEPDGLFPVGTAAFEKRGVAITVPEWLSENCIQCNQCSFVCPHAAIRPILASDEELAGAPASFVAIEAKGKELNGLKYRMQVYAQDCMGCGSCADVCPAKNKALVMKPIETQMADQVANLAYADANIAIKDTLMARDSLKGSQFQQPLMEFSGACAGCGETPYVKLLTQMFGERMVVANATGCSSIWGASAPTTPYTTNKDGHGPAWGNSLFEDAAEFGYGMAMAYNQRRAKLADVVSEALTLDLDADLKAALQGWLDNKDDAEGSKKYGEEILGLLGGADDHPLLDELWHMSDQFTKKSVWIFGGDGWAYDIGYGGVDHVLASGEDINILVMDTEVYSNTGGQASKATPLGSIAKFAASGKKTGKKDLGRMAMTYGYVYVACVSMGANKQQVLKAFKEAEAYKGPSLIIAYAPCINQGLRKGMGKSMEEAKMAVESGYWPLYRFNPELAEEGKNPFVLESKAPNGTMQEFMAGETRYAALEKIAPEESKRLRAAIEKEYNERYLLLKQISEAPAVTAPAGDPVTVGNGDSGFCAVTETPEHARRKGGDACDDGRAAE
>NC_011769.1|WP_012612978.1|2275665_2277165_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MPTILVIDDDVQVCETIASLLARLHYACETAHTLEEGLRKLETADVDVVFLDVRLPDGNGLDALPRIRLSPSRPEVIILTGEGDPDGAELAIQGGVWDYLVKPSPIKQTTLTLHRALQYREEKLSRGDAAAVALDLDGVVGTSPSMRQCFDLVAHAASSDANVLVTGETGTGKELFARTIHRNSTRRAGTFVVVDCAALTESLVESTLFGHRKGAFTSALTDRDGLVKLADGGTLFLDEVGEMPLSIQRSFLRFLQERTFRPVGGTQEIKSDFRLISATNRDLDAMVERGEFRKDLLFRLKTVHVELPPLRSRPEDLKPLAIYHVNRLCEQYGVPHKGFSPDFFQQLAQYDWPGNVRELYNVLERSFVISGLESVLYALHLPQDVRIKITRAAIARPATGEGGIGAESAPYSAADGNGDGSGGAQDMVPPAKRADGLHGPDAAFTSPLPPLKGFKRLMERKYLEILIGQTGGNLQEMLDVSGLSRSHFYALLKKNNMSL
>NC_011769.1|WP_012612977.1|2272084_2275660_+|PAS-domain-containing-protein
MVTVLAALALLLCLSLGLASSPTSAPTPGALLPVSPAPAWAQTSHPAQSAQPPDTATSATGASGSLGTQEGARKNVLYLNSYHNGYAWSDHIQEGIRQTLAESPYSIVFQVEYMDSKKFHYQDTVSTLYALYRDKFRNKKFDIIIASDNVAVDFLLQFGEELFPGVPIVFCGLNDVQPETLRATGREMTGVLENYDVAYNIELALRLNPQLRRMVIIGDDSVTGAAIRNQVLAQLGPFRDRLVVEEWSDYSLDQMLDWVRDQSPDTFFYFVPIYRDIDGQFYSAEELLEKVHAASRAPLYSNWAFLLGHGIVGGKLISGVRHGEMAARMALQVLSGIHASSIPIVEQADQAFMFDNNELQRLFISPSQLPPDRIIINEPSRFYELNKQVFWTIIVSMVILSVTLVLLVMNILEKRRVEGKIKDQLSFLRSLMDTIPIPIYSKDADGRVRECNVAFERFFGVDREALLGRYEWQAGPEGVAMLRDASDSSLMHEPGVASYETTLPGPEGSPHSIIMHKATYRNSRGAVAGLVGVVFDYTDRKKAEDRLRAAEEKYRSLFESSPLGIFRVTPEGDYLDANPAMARMSGFASPALLLASGAGTFARLHDAPDMSCAGSDSGPGTGQDTVISFDSSVERPGGGTVTMHLTMRPQRDEAGMVRHIEGYAEDITQRKAAERALSASQRMLQLVLDNIPQFVYWKDRDLKYMGANKSFLGFVGLDSADALLGRTDEEVLPSAEDAARVHHDDEAVVRSGQPRYQTKVTITSPGGEAVWLETNRVPLLSDRGSQAEGSGDDVVGLLTTAEDVTQRIRLERQLLQSQKMEAIGTLAGGISHDFNNILTSIINSIELAISDIAADSLTCNDLMRALKAAQRGSRLVKQILTFSRPSVEGFVITDINEVLTEALVLIKASLPRNIEIRKAIPPRPSVTRADPTQIHQVLMNLCTNSFQALRDTGGVLEVNLEQEMLSDERALELGMEPGCALRLTVADDGPGIAPEIVDKIFDPFFTTKGKTEGTGLGLAVVHGIIKGHRGAVRVASVPWRRTEFEIYLPMHAQDACLIDPALLAPETGSERILFVEDDDDQLHTIPRVLESLGYTVRPFKNPLLALAAVREHPASFDLVITDFDMPEANGLELARKMGDIAPNMPIILVSGREVAAEGAAVAGNIKAMVHKPYNRNILADAIRRVFARLGS
>NC_011769.1|WP_012612976.1|2270875_2271508_-|hypothetical-protein
MTEQAAQHQADRKREAAADATCGLPPEAGDPTGGGTGQDGPATCQPDDYERGGPSGRDDTCDLCEEYRFLLQVLGSEAEVWKSLQQQFGIVTQRTQMVFGVGTLAISVAGFSGHRMAAAGPFSGLTLMAGLVCILAGMFVALYGVVRVRWMSSLRGDTVEASFLRLLAVRNRKTRYFLWSLKLVIVGLVLYVAALGWFLFRASLGLVPLV
>NC_011769.1|WP_012612975.1|2270194_2270572_-|hypothetical-protein
MLFLLGGNDKKARKAEAAQTENLERVRELFQSGRFPVVTTDGVEDRRIGRVLGLVACRGYDSDETFFGMAARAVNKGAQAIVGYQENVAFHPDGSKFFSCYGTAVQFSREEKDGGNGNGPLRLQA
>NC_011769.1|WP_012612974.1|2269361_2270138_-|class-I-SAM-dependent-methyltransferase
MLQIAEWCADRVRASTYVHDGKTQWYAPSLAGASTLAAALYKPDVYAGVLDVLGRLDEDDYSAYLKGFMRRGMARFGESWRYADICTVLYVLADLLGVESYLEIGVRRGRSLAMVLDRRPSADVVGFDLWLRDYAGMENPGPDYVAAQMVQLGHRGALRFVTGDSAATVPAYFAAHPDATYDLITVDGDHGPEGALRDLATVLPRLRIGGAIVFDDISHPELGYLRGIWQRVVQSQPNMSCHVYDETGYGVAFAIRMR
>NC_011769.1|WP_012612973.1|2268426_2269359_-|NAD(P)-dependent-oxidoreductase
MAGGTVLVTGATGFIGSHVLRALPPGSEAVGLASSVYPSSRDAVRLVRMTLPHPDLDELIARLRPAVVVHCAGVASVGLSMTSPGVDFQSGPPVVFQLYDAIRKAGTDTRVVQLSSAAVYGNPGVLPVAEHAPLGPISPYGWHKRMCEDLAHEFCGLYGISSAVLRVFSCYGAGLRKQLLWDVGHKLRAGDAVFSGTGEETRDYVHVRDLARFIVHLSKAWPGPGVHVCNVGSGQETSVRAMVEHMAAGCGLGHVTPEFSGAARKGDPQNWRADIGRARQLGLELTVPLEDGVHEYARWFLEQVKGTARQ
>NC_011769.1|WP_012612983.1|2286533_2288648_+|phosphate-acetyltransferase
MANNLYITATESKSGKSAVVLGMMQLLLRDIRKVAFFRPIINRPVTDAVDHDTNLILTHFNLDIPVADTYAYSLQDARELINNGQHATLLENILKKYKQLEDSYDFVLCEGTDFLGKDAAFEFDLNADIAANLGCPVMVVANGQQKTAHEIVASTQLTIDLLDEKGLDIVAAVINRASVTDAERDVVISSLECKVNCSNPLAVYVVPEEPTLGKPTMGDVKKWLNAQVLYGHGRMDTLVDDYVIAAMQIGNFLDYVTPGCLVITPGDRSDIILTGLATRLSGAYPDISGMLLTGGIQPAPNVHRLIEGWTGVPIPILSVKDHTYKTIQTLNELYGKIEPDNERKINTALGLFERSVDSQELGRRLINRKSSRITPMMFEFNLIERAKQNRMRIVLPEGVEERILRAADILARREVADIILLGDADKVGAKVSELGIALDGVQIIQPNLSPKFEEYAQAYFELRKHKGVSIERARDTMNDVTYFGTMMVHKGDAEGMVSGSINTTAHTIRPAFEFIKTKPGFSIVSSVFLMCLKDRVLAFGDCAVNPNPTAEQLAEIAINSAHTARIFGIEPRVAMLSYSTGSSGKGADVEKVIEATRIAKERAPELLLEGPLQYDAAIDMDVARTKLPGSQVAGQATVFIFPDLNTGNNTYKAVQRAAGAVAIGPVLQGLNKPVNDLSRGCTVPDIVNTVAITAIQAQAEKGLI
>NC_011769.1|WP_012612984.1|2288797_2290012_+|acetate-kinase
MNVLVINSGSSSIKYQLIDMTTEKALCSGLVERIGEGMGKLTHKIKPDTDAEEKIVLEQAFANHVEGMKKVVDLITDADKGVIADKGEIYAVGHRVLLGGEEIKQSVKIDEWAKGIIRDYIPLGPLHNPANLAGIEVAEELFPHAPSVGVFDTEFHQTMPKKAYLYPLPYDLYKTLRIRRYGFHGTSHRYITKKTAEFLGKPLDELNIITCHLGNGCSMAAVKNGRCVDTTMGITPLEGLMMGTRCGDIDPALVPFLMEKKGWSGAEIDTVMNKQSGLKGICGMNDMRDIHAAREKGDEMAELAFQMFVYRIRKYIGSFAVVVGKLDAIVFTAGIGENDDLVRAAVCKDMDILGIDIDEAVNAKRSGQARHIGKPGQRVPVLVVPTNEELEIAQTTVAVLNGKN
>NC_011769.1|WP_012612985.1|2290168_2291230_+|phosphotransacetylase-family-protein
MVGIYIGSTAARAGKNLVCMALGLALRQTGRNVGFMKPLGTLPRTVDEQTGDEDALLVQEVLGLSAPPEVLTPVIMPGNIRAAALSGGNALERVASAYGALSRGHDTMLVGGAGAFLTTGKARGVDGPTVVRRLGLKVLLVERYAHGIDYDAILYAKELLGDALAGVLCNDVPESYLRDAEEVLVPFLAERGVPVLGIVPNDPLLNAIKVSELAHRLGGRMVSGTARASRIVDGFLIGTMQVENFMAHFRRHANCATIVGGDRTDLQLVALEGQCPCLVLTGNIPPDEIIRARSEALGVPVVVVREDTYTVARKMEEILNSQKLRELVKIRRGADLVAHALDLARLTAQLGIQ
>NC_011769.1|WP_012612986.1|2291366_2291996_+|lactate-utilization-protein
MSATNDLARLMREKAEAVGATVVELKDLKEAFAYALDVCDKKEACQLLVSGCEEKLSDKAEALCETKQEKVVAAPNLSEDEYAAFSALCAERGVKCIREGLRGHLAGIDIGVAHADMAIAETGTCVIDSTSEELRLSSMISEIHMAILPKSRIKATAFDAEREVNALINTGTPRYTAFITGPSRTADIERVLAIGVHGPLELHILMLED
>NC_011769.1|WP_012612987.1|2292000_2294151_+|4Fe-4S-dicluster-domain-containing-protein
MQTAKTLKEYRKELRESLDNEFLREAMDKFATAYPVSRANAFRGLDEKAMIAEVADAKDAAAKNMDALYAQFKAEAKKRGVKVHMAKDAAEANEIIARIAKNSNCKKIVKSKSMTAEETLLNHRLEEDGLEVIETDLGEWIIQLRHEGPTHMVMPAIHLSRYQVADLFSEVTKQKQEVDIQRLVKVARRELRQHFATADMGISGANFAIAESGTIGLVTNEGNARLVTTLPRVHVALCGLDKLTPSLNDALKSLRVLPRNATGQAITSYVTWITGANECKAAADEKKEMHIVFLDNGRRALAQDPLFSQVMRCVRCGACANVCPVYRLVGGHKMGHIYIGAIGLILTYFFHGKDKARNLVQNCINCESCKSICAGGIDLPRLIKEIRARLSEEDGAPVEATLLGKVLKNRKLFHTLLRFGKFAQKPVTGGTPYLRHLPQMFMKDHGFRALPAIADKAFRDEWETIRPRVSNAKLRVALFSGCVQDFVYPEQMKAAVKVLASRGVEMDFPMDQSCCGLPVQMMAERQATIDVARQNVMAFDAAKYDYILTLCASCASHLKEGYPNILAGQTDMTGKVKLFASKVIDFSSFVHDVLGMTADDFKGKGEKVAYHSSCHLCRGLGVVEQPRALIASSGSEYCPAQEEAVCCGFGGTFSMKFPELSKELLDKKLNNAEATGATRMVADCPGCIMQIRGGAEKRGSRMKVGHIAELLAENLK
>NC_011769.1|WP_012612988.1|2294386_2296210_+|HAMP-domain-containing-protein
MFRNFSIGARVIALLVFMVLFVTGVVGAFVATIDTVKDHGVTETQQVMLEEEKAKLQVATHSVALALGQLLADVPADAGEAARIEMVRKAIDTIRFEKDQSGYYFVYQGTTNVALPPNKSVQGKDLSETKDKNGVYFVRELAQRASSGGGFVEYIFPKPGKGDQPKLAYAEMIPGTRFWIGTGVYIDNIDDAKSAINATLEGLANKALTWQLSVMAAILLLVVIPVCIMLIASIVRPLREATTAAQAVAEGNLEVRIEARGRDEVSALQAALNTMVTTLKNNIADITEKQREAGRQADAARASTQQAEEAMAKAAVATKEGILTAAERLEGVVRAIDHAADDISRRSEEISRGTDTQMARINETATAMEEMNATVLEVARNAGRAADQTEASRTKADEGSGMVGQTVKAMQDLKGLASNLKDNMHRLGQQSEAIGHVMNVINDIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRKLAEKTMGATKEVGDSIKAIQDLARTNVTGMDDAVNAIDGAARLSGSSGELLQEIVTMAHDAAGQVQAIATAAEEQSAASEEITRSVEEIDRIARETGTLVNATNTDLRNLADQAAELRRLIEGMKKEAA
>NC_011769.1|WP_155860536.1|2296433_2297573_-|DUF362-domain-containing-protein
MTHAFRSSDHSRPSCKSGHSGHSGLPVPLPAPWRRDGAGRPSGAADKPNGAPVQPAFIGASASGHPDALAPDAAPPVPVALLRCPDYDPQRVGRVVAEALDASGWTPPRGHVLVKPNLLRATPALSCTHPQVVRAACAWLLDSGCRITVADSPGFGTARGVAEAIGLTEALRPLGLSVVPLDDAVQVPLSFGGSIGVARCALQADGVLSVPRLKAHSQMRVTLAVKNLFGGVPGVRKAFVHTRHGDRDHRFEGALVEVAATLPPTAALLDGVQAMHVTGPGAGKPYHLGLVGASASGVALDAAVCGLLGLTPAQVPLWAELARRAAPGAHSGEIELVREGPGAFDAGRFEVPGVLKPMSFRPGTLLRSTVRRLWAAWRS
>NC_011769.1|WP_012612990.1|2297569_2298598_-|sulfurtransferase
MSPSPRVPIESISPQALRDFMAARPEGSYVLVDVRQPEEYRQEHIPGARLVPVGELARLLATLDPAQDHVFYCRSGGRSAAAAVMAAESGRFAAPSLGMGGTGATGGMGGSGATGGMGGTDATGGMGGSAATAGGRILNLTGGMNAWSAGPGQAVANSPRIQVFAGVRSMVELLRRALDMEKAAHLLYTRVRAAGPKPAVCALMDRLIGVELAHAKVVYHHLAQRWDADAHADATRGPLPPFDALFEALEGRVLEGGMAVSDLEPWLRDAASGDCLDIAELALEVEMNAYDLYRTLADEARRGSGLGGLAERAFLDLATQEKTHARMIIDQIATFSADGEDR
>NC_011769.1|WP_081437379.1|2298999_2300226_-|acetamidase/formamidase-family-protein
MLGPVEDGGIIVANTAPGCWGPMLTPAIRGGHEVTQPVYVQGAEPGDSIAIRILSIQVTSRVTASGNDSMFADRCLGDPYVAGKCPQCGALYENTCVEGCGPDCIRCAACGAAAAPFAFTNGYTIAFNEQGTLGVTLNKAAAERVAGNARQYMCTPDNSIQNPVVALAPSDIPGVVSRMIPFVGQLGVMPTRQIPDSHNARDFGSFLVGAPHEYAITQEQLADVTDGHMDINRVRAGAVLITPVRVPGGGVYVGDMHAMQGDGEIAGHTADVAGVITMQVSVLKGVTCGGPIILPVYDDLPLLARPLSEDEKRQARQQADAWGVQLEESAPISFVGTGPNLNDATACALDRAATFLGCTVPEVMNRATITGNIQIGRAPGTVTATFLAPVDTLREKGVYELIRTQYGL
>NC_011769.1|WP_012612992.1|2300699_2302052_+|radical-SAM/SPASM-domain-containing-protein
MPTAAIAASPAPRHDALLPYPRKLFVEVTSRCNLHCRMCVKHSSDIRAPEGDMTAETYAALLPAMPHLNGLVLNGVGEPLLHRDLETFIRLARQHMPPEGWVGFQTNGHLLTESRAHALLAAGLDRICLSIDAVSPELFSTCRAGGDVDHMERALANLATARAARPGAPLAVGVEFVVMRDNLNELPATLRWAAERGADFAIVSHVLPYAPGMSEQAVFGTNTEESMRFYREWQARAEREGIDIRRYFDVVWRFRFTEEETRITSFIREMTEAAREADVPLHLHNLLRDADAHVPEAEAVFDAARAVAREHGLHLRLPALHPRNLRHCPAVDEGGAFIAWDGKVAPCYFLWRDYHCHMYGMRKQVVGRFFGTVGPAQGQDILDVWNGPEYRAFRDRVTAKGYPFCTNCNVYPCDDIETTTFETDCYGEPVPCGDCPWCLGLLQCMGQELG

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Crispr_ID: NC_011769_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011769_4

2444693-2448151

TypeI

I-C

Consensus_repeat	Method
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	PILER-CR
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CRISPRCasFinder
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CRT

52 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NC_011769_4

>merge|NC_011769|4|2444693-2448151|PILER-CR,CRISPRCasFinder,CRT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAACGTACTGTACCCCGGCGAGCGCGAGGTGCTGGAATCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCACATGCCGTCGTGGATTTCGCCCTTTGTCAGCCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCTCAAGCAGTCCCCAGCGGGTGCTGTGTCGTGGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACACTCACAGCGTCACCCCCAGGCTGGCGAGAAGGCCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACATCCTCGGTCGCCTTGACGATGTAGACCTTGTTGCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACGCCTCTGCCGTGCGCCAGTACGCCGCCGACAACAAGTCGCCCCTCACGCGGGGGCGTGGATAGAAACAAGCCGTACAGGGTCTTCCAGTTCCAGCGGTGCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACACGCCACCGGCCAGCATCGGCGCGGTCGGTGACGTCGCCCCTCAGGCGGGGGCGTGGATAGAAACCGGCAAGGCGACGCGCATGCGCAACCACAGGATGTCGCCCCTCACGCGGGGGCGTGGATAGAAACACACCACCGGTGCCGCTGGACACGCATAGAATGCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCGCGAGGTACGCAGGGTGCTGCACCCAACTGGCACGTCGCCCCTCACGCGGGGGCGTGGATAGAAACGTGCAGGTGCGTCCGTTGAACCAGTGGTGGGCATGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACATGTGCTGGTCCGACACGGCAAGGGAAGCTGCTGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCGAAACACCATGGACGGACAAGAGCGGCTGCCGCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACTTGCGCTCCGGCCAGAGCATGACGCACCGCGTCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCTTTTTGCGTGTGGTCGGTTAATCTGGCCTCATGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACTCCATGAACCCGTCCATCGCGGTCATCGTCCCTCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCCCCCAGCTCACCGCACAGGGCCTGCACACGCCCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACACTCGCAAGCTGGCGAGGCGCAGTCGCCACCTTGGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCCCTGTACGCGGCTACACCACGCGGTACAGCCACAAGTCGCCCCTCACGCGGGGGCGTGGATAGAAACAGCGACTTCCTTCGCCGCCTCGCTGGCGTTGATGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACTGGATGACGGACGAAAGACCTTCCGGTGTGGTGAGTCGCCCCTCACGCGGGGGCGTGGATAGAAACAATCGAGGTATTGATGGAGTCGAAAGCCGACTTGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACAAGCCCCGAGAAGAAGAGGTGCGCATCCCCGAGTCGCCCCTCACGCGGGGGCGTGGATAGAAACAGACCGTGAACCTCGGCAAGACGACCATCCCCGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACACCGATGCGCGGCCCGTCAGTGAAAAGAATCCCGCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCAGACAGTCTCCCCAAGCGCGTCGCCGAAAGTCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCGCCTCGGCGACCACGGCTGCGGTGGTGCTGGTGTCGCCCCTCACGCGGGGGCGTGGATAGAAACGCAATTGACCTACGCATCCGCGTTCCAGTTGGCGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACGGCACCGCAACGGACCTGATGCTGGGTTATTACGTCGCCCCTCACGCGGGGGCGTGGATAGAAACATGCGGCAAGCTCCTTGGACAGCAGGTAGTTTGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCACGGGTGGCGGCCCCACGGCTTCGCACCCCAGTCGCCCCTCACGCGGGGGCGTGGATAGAAACTGCATCAGGGCGTCGCATGCCTTGGCCGTCCAGCCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACGGCAAGATCTACGTCGAAGAAGACCCCTCTACCAGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCCCACATCCCTGACGAGTACATCAACATCGACCTGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCGGCAAGCCCGTCCCGGTGGATCAGCCCATGGGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACATGTCCGCCTACTACGGCAACGACGCCGTGCCCGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACTCCCGGCTTCTAGCCCCGCCGCACGTACCGTCCCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCCCGTCGTCGTTGGTTTCCTTCAGGACCAGCACCTGTCGCCCCTCACGCGGGGGCGTGGATAGAAACAGGCGCGGCCCGGCCTGCGTCCACGTCAGCAGGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACACCGTGGCAAACCCGCACTCGCGGTGGTTGTTGCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACGCAGAGTGTGCGAAGGGCCTTTGTAGCCCCTTCCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACGTCTTCACCGCTCACGGGGCGCAGCCCCTCCCCGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACGCCGATAACCTGTGCGTCCACCCTGAAGCCCGCCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACATGCCGGGCATGGGGGACACGGTGGCTGGCCAGGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACATGCCGAGGAACACGTCAGTGGCATCCGTGGTGTGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCGGTGGTCGCCCCGTAGTGGTGCGTGGCAGCGGCAGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACCCTGCCCGAGGCGCAGACGCCCGTGGTCATCTCGCGTCGCCCCTCACGCGGGGGCGTGGATAGAAACTTCCATGGCCCTGCATGTCAGGAAGTCACCGGAGGTCGCCCCTCACGCGGGGGCGTGGATAGAAACATGGTCCAGTGCGACCGCTGCGACACCATCACGGGTCGCCCCTCACGCAGGGGCGTGGATAGAAACACGGCCTCATGCACCGAGGCCGCAGTGGCGTAGGTCGCCCCTCACGCGGGGGCATAGAAACGTGGCCATCATGGCCGTCTGTGCGTGGCTGATCGAGTCACCCCTCACGCGGGGTGCAGATAGAAACA

>NC_011769|4|1|2444693-2448023|PILER-CR
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GTACTGTACCCCGGCGAGCGCGAGGTGCTGGAATC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CACATGCCGTCGTGGATTTCGCCCTTTGTCAGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CTCAAGCAGTCCCCAGCGGGTGCTGTGTCGTGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACTCACAGCGTCACCCCCAGGCTGGCGAGAAGGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATCCTCGGTCGCCTTGACGATGTAGACCTTGTTGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCCTCTGCCGTGCGCCAGTACGCCGCCGACAACAA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AAGCCGTACAGGGTCTTCCAGTTCCAGCGGTGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACGCCACCGGCCAGCATCGGCGCGGTCGGTGAC
GTCGCCCCTCAGGCGGGGGCGTGGATAGAAAC	CGGCAAGGCGACGCGCATGCGCAACCACAGGAT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACACCACCGGTGCCGCTGGACACGCATAGAATGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGCGAGGTACGCAGGGTGCTGCACCCAACTGGCAC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GTGCAGGTGCGTCCGTTGAACCAGTGGTGGGCATG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGTGCTGGTCCGACACGGCAAGGGAAGCTGCTG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGAAACACCATGGACGGACAAGAGCGGCTGCCGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TTGCGCTCCGGCCAGAGCATGACGCACCGCGTC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CTTTTTGCGTGTGGTCGGTTAATCTGGCCTCATG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TCCATGAACCCGTCCATCGCGGTCATCGTCCCTC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCCCAGCTCACCGCACAGGGCCTGCACACGCCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACTCGCAAGCTGGCGAGGCGCAGTCGCCACCTTGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCTGTACGCGGCTACACCACGCGGTACAGCCACAA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AGCGACTTCCTTCGCCGCCTCGCTGGCGTTGATG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TGGATGACGGACGAAAGACCTTCCGGTGTGGTGA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AATCGAGGTATTGATGGAGTCGAAAGCCGACTTG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AAGCCCCGAGAAGAAGAGGTGCGCATCCCCGA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AGACCGTGAACCTCGGCAAGACGACCATCCCCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACCGATGCGCGGCCCGTCAGTGAAAAGAATCCCGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CAGACAGTCTCCCCAAGCGCGTCGCCGAAAGTC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGCCTCGGCGACCACGGCTGCGGTGGTGCTGGT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCAATTGACCTACGCATCCGCGTTCCAGTTGGCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GGCACCGCAACGGACCTGATGCTGGGTTATTAC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGCGGCAAGCTCCTTGGACAGCAGGTAGTTTG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CACGGGTGGCGGCCCCACGGCTTCGCACCCCA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TGCATCAGGGCGTCGCATGCCTTGGCCGTCCAGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GGCAAGATCTACGTCGAAGAAGACCCCTCTACCA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCACATCCCTGACGAGTACATCAACATCGACCT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGGCAAGCCCGTCCCGGTGGATCAGCCCATGGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGTCCGCCTACTACGGCAACGACGCCGTGCCCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TCCCGGCTTCTAGCCCCGCCGCACGTACCGTCCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCGTCGTCGTTGGTTTCCTTCAGGACCAGCACCT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AGGCGCGGCCCGGCCTGCGTCCACGTCAGCAGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACCGTGGCAAACCCGCACTCGCGGTGGTTGTTGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCAGAGTGTGCGAAGGGCCTTTGTAGCCCCTTCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GTCTTCACCGCTCACGGGGCGCAGCCCCTCCCCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCCGATAACCTGTGCGTCCACCCTGAAGCCCGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGCCGGGCATGGGGGACACGGTGGCTGGCCAGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGCCGAGGAACACGTCAGTGGCATCCGTGGTGT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGGTGGTCGCCCCGTAGTGGTGCGTGGCAGCGGCAG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCTGCCCGAGGCGCAGACGCCCGTGGTCATCTCGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TTCCATGGCCCTGCATGTCAGGAAGTCACCGGAG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGGTCCAGTGCGACCGCTGCGACACCATCACGG
GTCGCCCCTCACGCAGGGGCGTGGATAGAAAC

>NC_011769|4|4|2444693-2448088|CRISPRCasFinder
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GTACTGTACCCCGGCGAGCGCGAGGTGCTGGAATC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CACATGCCGTCGTGGATTTCGCCCTTTGTCAGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CTCAAGCAGTCCCCAGCGGGTGCTGTGTCGTGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACTCACAGCGTCACCCCCAGGCTGGCGAGAAGGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATCCTCGGTCGCCTTGACGATGTAGACCTTGTTGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCCTCTGCCGTGCGCCAGTACGCCGCCGACAACAA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AAGCCGTACAGGGTCTTCCAGTTCCAGCGGTGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACGCCACCGGCCAGCATCGGCGCGGTCGGTGAC
GTCGCCCCTCAGGCGGGGGCGTGGATAGAAAC	CGGCAAGGCGACGCGCATGCGCAACCACAGGAT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACACCACCGGTGCCGCTGGACACGCATAGAATGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGCGAGGTACGCAGGGTGCTGCACCCAACTGGCAC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GTGCAGGTGCGTCCGTTGAACCAGTGGTGGGCATG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGTGCTGGTCCGACACGGCAAGGGAAGCTGCTG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGAAACACCATGGACGGACAAGAGCGGCTGCCGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TTGCGCTCCGGCCAGAGCATGACGCACCGCGTC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CTTTTTGCGTGTGGTCGGTTAATCTGGCCTCATG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TCCATGAACCCGTCCATCGCGGTCATCGTCCCTC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCCCAGCTCACCGCACAGGGCCTGCACACGCCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACTCGCAAGCTGGCGAGGCGCAGTCGCCACCTTGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCTGTACGCGGCTACACCACGCGGTACAGCCACAA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AGCGACTTCCTTCGCCGCCTCGCTGGCGTTGATG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TGGATGACGGACGAAAGACCTTCCGGTGTGGTGA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AATCGAGGTATTGATGGAGTCGAAAGCCGACTTG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AAGCCCCGAGAAGAAGAGGTGCGCATCCCCGA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AGACCGTGAACCTCGGCAAGACGACCATCCCCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACCGATGCGCGGCCCGTCAGTGAAAAGAATCCCGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CAGACAGTCTCCCCAAGCGCGTCGCCGAAAGTC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGCCTCGGCGACCACGGCTGCGGTGGTGCTGGT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCAATTGACCTACGCATCCGCGTTCCAGTTGGCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GGCACCGCAACGGACCTGATGCTGGGTTATTAC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGCGGCAAGCTCCTTGGACAGCAGGTAGTTTG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CACGGGTGGCGGCCCCACGGCTTCGCACCCCA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TGCATCAGGGCGTCGCATGCCTTGGCCGTCCAGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GGCAAGATCTACGTCGAAGAAGACCCCTCTACCA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCACATCCCTGACGAGTACATCAACATCGACCT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGGCAAGCCCGTCCCGGTGGATCAGCCCATGGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGTCCGCCTACTACGGCAACGACGCCGTGCCCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TCCCGGCTTCTAGCCCCGCCGCACGTACCGTCCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCGTCGTCGTTGGTTTCCTTCAGGACCAGCACCT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AGGCGCGGCCCGGCCTGCGTCCACGTCAGCAGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACCGTGGCAAACCCGCACTCGCGGTGGTTGTTGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCAGAGTGTGCGAAGGGCCTTTGTAGCCCCTTCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GTCTTCACCGCTCACGGGGCGCAGCCCCTCCCCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCCGATAACCTGTGCGTCCACCCTGAAGCCCGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGCCGGGCATGGGGGACACGGTGGCTGGCCAGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGCCGAGGAACACGTCAGTGGCATCCGTGGTGT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGGTGGTCGCCCCGTAGTGGTGCGTGGCAGCGGCAG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCTGCCCGAGGCGCAGACGCCCGTGGTCATCTCGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TTCCATGGCCCTGCATGTCAGGAAGTCACCGGAG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGGTCCAGTGCGACCGCTGCGACACCATCACGG
GTCGCCCCTCACGCAGGGGCGTGGATAGAAAC	ACGGCCTCATGCACCGAGGCCGCAGTGGCGTAG
GTCGCCCCTCACGCGGGGGCATAGAAACGTGG

>NC_011769|4|1|2444693-2448151|CRT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GTACTGTACCCCGGCGAGCGCGAGGTGCTGGAATC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CACATGCCGTCGTGGATTTCGCCCTTTGTCAGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CTCAAGCAGTCCCCAGCGGGTGCTGTGTCGTGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACTCACAGCGTCACCCCCAGGCTGGCGAGAAGGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATCCTCGGTCGCCTTGACGATGTAGACCTTGTTGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCCTCTGCCGTGCGCCAGTACGCCGCCGACAACAA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AAGCCGTACAGGGTCTTCCAGTTCCAGCGGTGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACGCCACCGGCCAGCATCGGCGCGGTCGGTGAC
GTCGCCCCTCAGGCGGGGGCGTGGATAGAAAC	CGGCAAGGCGACGCGCATGCGCAACCACAGGAT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACACCACCGGTGCCGCTGGACACGCATAGAATGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGCGAGGTACGCAGGGTGCTGCACCCAACTGGCAC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GTGCAGGTGCGTCCGTTGAACCAGTGGTGGGCATG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGTGCTGGTCCGACACGGCAAGGGAAGCTGCTG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGAAACACCATGGACGGACAAGAGCGGCTGCCGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TTGCGCTCCGGCCAGAGCATGACGCACCGCGTC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CTTTTTGCGTGTGGTCGGTTAATCTGGCCTCATG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TCCATGAACCCGTCCATCGCGGTCATCGTCCCTC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCCCAGCTCACCGCACAGGGCCTGCACACGCCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACTCGCAAGCTGGCGAGGCGCAGTCGCCACCTTGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCTGTACGCGGCTACACCACGCGGTACAGCCACAA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AGCGACTTCCTTCGCCGCCTCGCTGGCGTTGATG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TGGATGACGGACGAAAGACCTTCCGGTGTGGTGA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AATCGAGGTATTGATGGAGTCGAAAGCCGACTTG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AAGCCCCGAGAAGAAGAGGTGCGCATCCCCGA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AGACCGTGAACCTCGGCAAGACGACCATCCCCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACCGATGCGCGGCCCGTCAGTGAAAAGAATCCCGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CAGACAGTCTCCCCAAGCGCGTCGCCGAAAGTC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGCCTCGGCGACCACGGCTGCGGTGGTGCTGGT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCAATTGACCTACGCATCCGCGTTCCAGTTGGCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GGCACCGCAACGGACCTGATGCTGGGTTATTAC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGCGGCAAGCTCCTTGGACAGCAGGTAGTTTG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CACGGGTGGCGGCCCCACGGCTTCGCACCCCA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TGCATCAGGGCGTCGCATGCCTTGGCCGTCCAGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GGCAAGATCTACGTCGAAGAAGACCCCTCTACCA
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCACATCCCTGACGAGTACATCAACATCGACCT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGGCAAGCCCGTCCCGGTGGATCAGCCCATGGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGTCCGCCTACTACGGCAACGACGCCGTGCCCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TCCCGGCTTCTAGCCCCGCCGCACGTACCGTCCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCCGTCGTCGTTGGTTTCCTTCAGGACCAGCACCT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	AGGCGCGGCCCGGCCTGCGTCCACGTCAGCAGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ACCGTGGCAAACCCGCACTCGCGGTGGTTGTTGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCAGAGTGTGCGAAGGGCCTTTGTAGCCCCTTCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GTCTTCACCGCTCACGGGGCGCAGCCCCTCCCCG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	GCCGATAACCTGTGCGTCCACCCTGAAGCCCGCC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGCCGGGCATGGGGGACACGGTGGCTGGCCAGG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGCCGAGGAACACGTCAGTGGCATCCGTGGTGT
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CGGTGGTCGCCCCGTAGTGGTGCGTGGCAGCGGCAG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	CCTGCCCGAGGCGCAGACGCCCGTGGTCATCTCGC
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	TTCCATGGCCCTGCATGTCAGGAAGTCACCGGAG
GTCGCCCCTCACGCGGGGGCGTGGATAGAAAC	ATGGTCCAGTGCGACCGCTGCGACACCATCACGG
GTCGCCCCTCACGCAGGGGCGTGGATAGAAAC	ACGGCCTCATGCACCGAGGCCGCAGTGGCGTAG
GTCGCCCCTCACGCGGGGGCATAGAAACGTGG	CCATCATGGCCGTCTGTGCGTGGCTGATCGA
GTCACCCCTCACGCGGGGTGCAGATAGAAACA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011769.1\|WP_012613098.1\|2449370_2449688_+\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_012613090.1\|2438874_2439540_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NC_011769.1\|WP_012613103.1\|2457072_2457792_+\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_012613092.1\|2441450_2442404_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NC_011769.1\|WP_012613105.1\|2459259_2462016_-\|phosphoenolpyruvate-synthase	unknown	unknown	gnl\|CDD\|376527
NC_011769.1\|WP_155860677.1\|2458199_2458886_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NC_011769.1\|WP_012613085.1\|2430283_2432653_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NC_011769.1\|WP_012613100.1\|2451195_2454372_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NC_011769.1\|WP_012613101.1\|2454442_2455216_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NC_011769.1\|WP_012613093.1\|2442414_2443182_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NC_011769.1\|WP_155860676.1\|2455946_2457071_+\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|376667
NC_011769.1\|WP_012613091.1\|2439536_2441426_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NC_011769.1\|WP_012613095.1\|2444215_2444506_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_011769.1\|WP_155860675.1\|2450198_2450708_-\|bacterioferritin	unknown	unknown	gnl\|CDD\|153099
NC_011769.1\|WP_012613087.1\|2434692_2434896_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|224853
NC_011769.1\|WP_012613096.1\|2448256_2448454_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367555
NC_011769.1\|WP_012613094.1\|2443181_2444213_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NC_011769.1\|WP_012613089.1\|2436552_2438775_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NC_011769.1\|WP_049761597.1\|2448842_2449097_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370292
NC_011769.1\|WP_012613088.1\|2435370_2435865_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011769.1\|WP_012613090.1\|2438874_2439540_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.87741e-103
NC_011769.1\|WP_012613092.1\|2441450_2442404_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.36468e-143
NC_011769.1\|WP_012613105.1\|2459259_2462016_-\|phosphoenolpyruvate-synthase	gnl\|CDD\|376527	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain. This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP).	9.14567e-94
NC_011769.1\|WP_155860677.1\|2458199_2458886_+\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	1.05735e-84
NC_011769.1\|WP_012613085.1\|2430283_2432653_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	5.91963e-145
NC_011769.1\|WP_012613100.1\|2451195_2454372_+\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.41194e-78
NC_011769.1\|WP_012613101.1\|2454442_2455216_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	1.84797e-45
NC_011769.1\|WP_012613093.1\|2442414_2443182_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.60381e-41
NC_011769.1\|WP_155860676.1\|2455946_2457071_+\|TSUP-family-transporter	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.51473e-18
NC_011769.1\|WP_012613091.1\|2439536_2441426_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NC_011769.1\|WP_012613095.1\|2444215_2444506_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.24435e-30
NC_011769.1\|WP_155860675.1\|2450198_2450708_-\|bacterioferritin	gnl\|CDD\|153099	cd00907, Bacterioferritin, Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) bestowing ferroxidase activity.	2.3761e-43
NC_011769.1\|WP_012613087.1\|2434692_2434896_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|224853	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only].	1.22116e-22
NC_011769.1\|WP_012613096.1\|2448256_2448454_+\|hypothetical-protein	gnl\|CDD\|367555	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal. The TonB_C domain is the well-characterized C-terminal region of the TonB receptor molecule. This protein is bound to an inner membrane-bound protein ExbB via a globular domain and has a flexible middle region that is likely to help in positioning the C-terminal domain into the iron-transporter barrel in the outer membrane. TonB_C interacts with the N-terminal TonB box of the outer membrane transporter that binds the Fe3+-siderophore complex. The barrel of the transporter, consisting of 22 beta-sheets and an inside plug, binds the iron complex in the barrel entrance.	1.69366e-08
NC_011769.1\|WP_012613094.1\|2443181_2444213_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NC_011769.1\|WP_012613089.1\|2436552_2438775_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.52227e-61
NC_011769.1\|WP_049761597.1\|2448842_2449097_+\|hypothetical-protein	gnl\|CDD\|370292	pfam09098, Dehyd-heme_bind, Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding. Members of this family are predominantly found in the prokaryotic protein quinohemoprotein amine dehydrogenase. They have a predominantly alpha-helical structure and can be divided into two subdomains, each binding a haem C group via a conserved CXXCH motif.	1.50757e-05

>NC_011769.1|WP_012613095.1|2444215_2444506_+|CRISPR-associated-endonuclease-Cas2
MLMLITYDVNTEDREGKTRLRRVAKLCLDYGQRVQFSVFECEVDPGQWETLRHKLVSTIAPEKDSLRFYRLGRDGKRRVEHVGIKEPVDLEGPLVV
>NC_011769.1|WP_012613094.1|2443181_2444213_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRRLLNTLYVTTQGAYLAKDGEAVAVRVEQETRLRVPLHGLGGVVCFGLVSASPPLLAACAEQDIGVSFLSEHGRFLASVRGPVSGNVLLRREQYRRADQPDARALLCGCFVQGKIINARTVLRRFLRDHGDSAGAPAIASAASSMADMLDRVVRATTEEQIRGIEGEAASLYFGVFDGLILTRTRDFTFTTRSRRPPLDPVNCLLSFVYTLLAHDVRSALETVGLDPQVGFLHRDRPGRPSLALDVMEEFRHWLADRLVLSLVNRGQLDPKDFKRSGSGGVVLADDARKDVLVAWQKRKQEEVLHPFLDERMPIGLLPHTQAMLLARHLRGELDAYPPFLWK
>NC_011769.1|WP_012613093.1|2442414_2443182_+|CRISPR-associated-protein-Cas4
MYPESDLMPVSALQHLIYCPRQCALIHIEQVWDDNVHTALGNILHERVDRPGMERRRGVRTEFGVPLRSLALGLAGRADAVEFAADGPCPVEYKQGRPKRHAADHIQLCAQAMCLEEMTGRAVPLGVLFYATTRKRQTVELDEHLRQLVRETTMALHALVATGITPRPEPGPKCKGCSLADRCRPGTFAQGGRSAARYLAQARRAVRDEDARPGARDGVPDGILDGVPKGTRDGARDIDMPSAPRPPHPPRQEDD
>NC_011769.1|WP_012613092.1|2441450_2442404_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSQPISKRYEFVLFFDVENGNPNGDPDAGNLPRLDPETSHGLVTDVCLKRKVRNYISIAKGNTEPHLIFIKEKSILNSTIRRPYEEDPATKACLQEWLAYKKNKKTPKPKEHYEDLAQKWLCQKHYDIRAFGAVMSTGEEEKNEDISSKIRMRAGQVRGPVQMAFARSVEPVVPLDISITRMAVATEREAEAQEGDNRTMGRKSIIPYGLYRAEGFVSAHLAAQTGFTDDDLELFWQALESMFEHDHSAARGKMASRALIVFEHEGALGNAPAHKLFELVASPRAEGSTGPARAFEDYAITVNDAGAPAGVRVIRRL
>NC_011769.1|WP_012613091.1|2439536_2441426_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALNAYYQRLADDPSENVPRQGYSREKIHFALVIGQDGTLLDVHDLRERAGKRTVPKELLVPSLGKPRSGTKAPPNFLWDNTGYVLGADAKGKPEHARSCCLAFRELVRKVPADGDTGIAAVLAFLDNWNPDDASQAVSAFLPWDEVAGWNVVFRLDGDMGYIHDRPAARTAWEALRGQSADAEQGFCLITGRLASIARLHPTIKGVHGAQSSGAALVSFNLDASTSYGKKQNHNAPVSEAAAFGYTTALNHLLRESNNRRVQIGDATTVFWSERPSVLEDLLGLFLGKSPPPAAPADNTDAAGVAEGQTNDDADGRTADDGGLARHIHRILKAVCKGQMPPELGDTNVPFYVLGLASSMARLSVRFFEVSSTGEIVARMGNHFRHIAIETRPLSLQKHAFHSRNSRHTRRFEQDLEFPSVAQLLTELAPTRKNDSIPPPTLTGALMRAILGGHPYPRSLLATIIERIRADHEVSYLRAALLKGYFTRAPKGDNTWEVGVTLDPASTDIGYRLGRLFAVLEKAQRDALPGINATIKDRFYGSVSSTPRVAFPRLIHLAQAHLGKLDRPKRIFIDKLLLEIADEIDNFPAHLTMDEQGRFALGYYHQCNALWRSSDTTAQAPVPADD
>NC_011769.1|WP_012613090.1|2438874_2439540_+|type-I-C-CRISPR-associated-protein-Cas5
MSFGVSLAVWGEYACFTRPEFKTERVSYDVITPSAARGLLEAVYWKPAIAWMVDRIRVLNPIRFDSVRRNEVGCKIPLGAVTAAMKDPERPLGILVEDERRQRATLLLRDVRYVIDAHFEARDEDGRNTAKHRDIFLRRAARGQCFHMPYLGCREFPASFQLVEGDPPHPHESLLEERDLGWMLHDLDYGPDGERQPRFFRACMQDGVIEVPPLRSLEVRA
>NC_011769.1|WP_012613089.1|2436552_2438775_+|CRISPR-associated-helicase/endonuclease-Cas3
MKYAHTLANRPESDWEPLSRHLEEVADLAAHFASAFGAGEWGLAAGLLHDVGKQSTAFQAYLRASTAGKGPGRGPDHSTAGAQWAHGHYNAKLGKLLAYALAGHHAGLPDGIESLAPRLKRAVEPWHSPGDDIAARVPEITGLPLAGRMPSLGFQLMLFVRMVFSCLVDADSLCTEAFTTPDKAAWRRGYLPLSELKVRLDRHLDHLATHAPATPVNSLRAGILAACRNAAPNVPGLFSLTVPTGGGKTLSSLAFALDHAQAHGLRRVIYAIPYTSIIEQTARVFREALNDTDDQAVLEHHSNFVPLRADGTPVTPRREGQDDDAGEGRRSVLAAENWDAPVVVTTNVQFLESLFAARRSPCRKLHNIARSVVILDEAQMLPPEHLLPCLEALRALVLDYGCSVVLCTATQPALGKREGFDRGLEQVREITPNPEQLATALRRVEVTDAGTLDDAQLAARLAGQPQVLCVVNTRPHARALYELLAPQGDAVHLSAAMCPAHRTEVLRGVRQRLLQGQPCRVVATQLVEAGVDIDFPVVYRAMAGVDSLAQAAGRCNREGNLERGQVYLFTPQDSPPPFVRQAAQAARTALRRNPDPLALDTVEAYFRELYWQKGDRLDSANLLPLMRDSAPRLDFPFPEVAHLFRLIPDDTIPLLIPYDDDARALIAELPYTPAPARLLRRAQRYTVGVYPRVLAALVQAGAAHLATEECAVLINEDLYDDRLGLCADNPTYRNPESLLG
>NC_011769.1|WP_012613088.1|2435370_2435865_+|hypothetical-protein
MAKFDCELFGHFVYGPELSYNDLLAREAELVDALHGALEACGGEHIDFTPTGDALRVQCVFVHHEETAFHAACAAVAPLLRGDVEGRMLFVDKGLDLLHLYLLADGAWQEATLRLPDARAGMAAHAHKDPALTVVPTAKPKPGAARAKRGKSEGGGKTAAKAVE
>NC_011769.1|WP_012613087.1|2434692_2434896_-|4-oxalocrotonate-tautomerase-family-protein
MPYVNIRITREGATSEQKAALIQGVTQLLVDILGKNPATTVVTIDEVDTDNWGVGGETITARRKRGV
>NC_011769.1|WP_012613085.1|2430283_2432653_-|ATP-dependent-helicase
MIDYRNELNPAQYQAATTLEGPLLVIAGAGSGKTRTIVYRLANLVEQGVPASAILLLTFTRKSAREMLHRAGRLLEHSATAAVHGGVHGVTGVQGGTFHAFAYSVLRQFRPSGYEAGDLTVMDGADIVDAVRHCKDNQGIGKGDRSFPRTQNIVGLISKSRNKELDIDEVIRREAFHLLVHAEGIGRIAAAYHAYRREHGLLDYDDLLFELERLLRERADVLDWCRARFRYIMVDEYQDTNLVQARLVHLLAGEGGNVMAVGDDAQSIYAFRGADVRNILDFPKLFPAAQIIKLEENYRSVQPVLDLTNAILAEAPQAYRKKLFAAREGGDRPQVVRPLSDLTQASLVVSRIVEFLRSYPPHDIAVLFRAGYQSYHVEVQLNKLGVKFRKYGGLRYSEAAHVKDVLSYARLVLNPLDLPAFQRIAAMSKGVGPKTTLKLYDVARQGNPEATSRACLRYPELRADLDLLDGLRKRPHTPTSLLEEVMEHYKPRMEAAFPDDWPRRQQGLEQLLQIAASYRDLDLFISDLSLEDPGEEEENRDSVVLSTIHSAKGLEWGAVLLIDLVEERFPSRHAIARAEDFEEERRLMYVACTRARDHLCLFVPASLYSRGDGGNQPAVPSPFVRELPAHLFDEMHESYSGGLMRRDAPNGQTGQRGAGFGGGRSGGGGFAQGNRFDGAPGIPRPPMFAEGTTPGRAGGGAGRPLPPTAYPGGAQPGAQGGGQTGGPPAAAPSLLSGGTAPAGQCGYCTHRIFGRGKIVQHLPPDKYRVNFPGFGLKVIMAEYLTLESD
>NC_011769.1|WP_012613096.1|2448256_2448454_+|hypothetical-protein
MVVVRLHIDPQGRVASRNVVGEESVNLFADTAMCAVKRWLLHPCGRGWRDVACEVGAPEVFKLFR
>NC_011769.1|WP_049761597.1|2448842_2449097_+|hypothetical-protein
MALTALLTGCGDKTPQGEAVVMRACRICHGTERICADIGKLDRAGWEKTVDRMIAGGASVTPEERTAVIDWLSTRKPGDKPLCP
>NC_011769.1|WP_012613098.1|2449370_2449688_+|hypothetical-protein
MRRTPTRRSRMLATLAVSAALTAVAAFSLTAPATAQDPAGTVMSACTKCHNTQRICANLGVKDKAAWNTTVTRMMGKGAQVGEAEKPAVVDWLAAQQPGAKPVCQ
>NC_011769.1|WP_155860675.1|2450198_2450708_-|bacterioferritin
MEVLNRARAMELNAITQYMNQHYGLDNMDYGALAADMKLIAIDEMRHAEMFAERIKELGGEPTTEREGDLVKGQDVQTIFPYDAGLEDDTIDAYNQFLQVCRENGDSISMKLFETIIEEEQVHFNHFDNVGEHLKNLGDTYLSKIAGTSASTGPSTKGFLISKGGAAAG
>NC_011769.1|WP_012613100.1|2451195_2454372_+|PAS-domain-S-box-protein
MPSVHHSGAASVAVRLVALALAIVLCGTVSYRTAAASGTAVPLDPALHAPETVRAATPSPTSPPASPSPPSILSSLSVLFSRPLGAMASATSDALSGTASQAVPTGVQPPAPWWMRLIDDAALVLPAAALLLWLTLRLRRTRRALNRAENTLGSIVQVTSPLVEQEFFRVLVQQLAHALGARYALVGELGDPGKQGKQGKQGESARLAGQTEQASQAHQARQVSQASQDGGKADDDYLRVLAAWLGDAPGEPFDYALHGTPCARVLNSPDLCVYPDGVQENFPEAELHASLGIRSYMGLALRDARGTPLGVLAVFHDLPMAPPTGESMALMRILAGRATAELERLRAGRALRESEARYRGLFENNHVVALLIDPTTKAIRDASPAAAEFYGWPRDVLRTMHISDINTLPPGTLHGELSSAARGERQRFRFRHRLANGTTRDVESNTGTLVLHGEPLLYSIITDVTEQRRAEEALRHSELRLRMLVESAGDAIYLADGAGHILDANPEAEHQTGHTREQLLRMTLFDIDERLDQRVFARLRAELESARKATFETTHRTRNGTPLPVEVRMAQVEETGEAEGDPLLLAIVRDSSARKRAESELRCAKEVAEAASRTKGEFLANMSHEIRTPLNGIMGMLQLLQTDPPKAMRTVYVGAATQSCRRLGLLLGDILDLSRIEAGKLELHDEPFEARAVLDEVRGLFEGPAAERGLTLRVSVDERIPRHLRGDAMRLRQVLFNLVGNAVKFTDQGEVVVEAWRVQASRSRGCRVVFTVRDTGIGIAEERLKDIFEPFVQAETASTRRYQGAGLGLPIVRRLVRLMCGTVTVESTPGAGTAFSVSLPFRFVNKVEEAVVEPHTADALSLRGRAILLAEDDAVNRLAVTRLLENMGARVTTADNGERAVQALLTADYDCALMDIQMPVMDGMEATRRLRALAHDGARDSAREGAHEGARAAVEDARAPGTTGDAPPAEDAEPDAENDAGSDALQDRRIDPRILRARSATPIIALTAHAMRGDREQFLAAGMDGYLTKPVEAATLASAIVRVIHEQGLREREPEGLH
>NC_011769.1|WP_012613101.1|2454442_2455216_-|HAD-family-hydrolase
MPIRAIIFDLDGTLLDTLDDLADAANACLLAQGFSAHPVDAYRQFVGDGVETLFRRALPPGIPTGDATEQAVAALVARMREEYGARWSAKSAPYPGIRELLAALAPAGLPLGVLSNKPHAFTRLMVGSFFDGAGSGAGAVSTDSPASASSPASAGSPASGGAPVEDGPLGPFAMVAGARPGVPRKPDPAAAIATARALGVDPAHAAFVGDSNVDMRTAHGAGMLAVGCLWGFRGEAELRESGASVLLAHPLELLDHI
>NC_011769.1|WP_155860676.1|2455946_2457071_+|TSUP-family-transporter
MLLPILMFSFAEAGSMLGSKTAYAPAFYSTKIFLVSIAVGLAAGLITGCIGAGGGFIITPALMAAGVKGILAVGTDLFHIFAKAIMGTTVHKKLGNVSVKLAIAFLVGSGAGTFIGGAINKGLYNKDPLLSEMFISSIYAVLLGFLGFYALFDFIKSSRSGGGGDAHGGSSGATGLSVKLQAMNVPPMITFDEDLVPGGRRISGWIVAAGGVVVGILAAIMGVGGGFITFPMFVYIFGVSSMTTVGTDILQIIFTAGLGAIAQYAIYGYVFYTLAMGMLIGSLLGIQVGALTTKVVKGIHIRGFYAMSIIAGFINRVATLPKKMVELEMISMSKELVNNIEFVGNIVFWVVVAIFGAWVFGKFFANIGKLRAEA
>NC_011769.1|WP_012613103.1|2457072_2457792_+|hypothetical-protein
MLIHSKSSFMKGLLLMGSFCAVFFMIFMPLFPGDGGKAMNGLEYSDDLFNKLSKGSSYFIPEVQKRVDPLKGKTVEVAYTSKKAEDAAKVFAAAGITATADGATLKVQGDLGTLLAAAVADADAMYKNDGKAVAARYAGMDHMVVMEAWWEGLNPMIKALQKNKMVEEANVVDAVLKRAVETGYNFYGIPAAKVMDKMGVMVGLLLFYVLYTVWYGFAIFELFDGVGLTMKKSKIKQEA
>NC_011769.1|WP_155860677.1|2458199_2458886_+|superoxide-dismutase
MSLCASAAVVAAGTRLLGPTVAHAADAPDAFPMPPLPYPENGLEPAISARTISFHYGKHTAAYYGNLNKAVAGTPMATMKLEDVIKSVAGDPAKAGLFNNAAQSWNHTFYWAGMKPGGGGTPPAKVADALSAAFGSVDACVTQLSDAAKTQFASGWAWLAKGRENGKDVLKVLKTGNAETPITQGYTPILTIDVWEHAYYLDYQNKRPDYVQAFFDKLVNWDEVAKRL
>NC_011769.1|WP_012613105.1|2459259_2462016_-|phosphoenolpyruvate-synthase
MGGFFHTLGALFRRQDAPAQDGGVPDAETERLRALYRERCSRFRLLLSANKSALEIMADMEEALRGVRPFGMTYVRGACTRACASVFQIVRHLNALSDDRWPELETRFNEIRAAIEAVVAPHVRAGGGPLVLPIAETGVDMADQTGGKMANLGEIRRRLGITVPDGFVVTATGYQRFMEAGGLQEEIDRRVQAADATRLDEVFALSASIQQLILAAPVPDDLAGAITAQVERLAGPPQDARTGPHPGINACSGAEVRFAVRSSAVGEDSLDASFAGQYRSELNVPPEDVLDTFKDIVASKYGVTAMTYRLARGIPDEDVPMCVGCLVMVDAVAGGVAYSRNPLDLRDNTVVINAVPGLPKAVVDGSFSPDVFVVSREVPMQVAQRQIAAKPQRFVRDPIEGVRLEDMPSDMVDAPCIDDARALEIASLAAGFEVFYGEPQDIEWAVCPEGVLTILQSRPLREARHDELPEGECAPVAGADGADATAADAAAETGPLPGGYNCGESGPPVLLLGGTPVSPGAGAGLAHVVRKDMDLLSFPDGGVLVIERALPRWAPLLSRASAVVAEAGGAAGHLASVAREYGVPALFGLPRAAELLEHAGIVTVDADNRRVHPGRIEDLLGHAPRRNLMEGSPVHTALAEAARLVLPLNLLDPESPRFAPAHCRTLHDITRFCHEKSVEVLFGVADHMGATGPGTQRLGKQLRVNGTRLQYWLLDIDGGFRKPVPGPVVDLADIASAPMLALWDGMTAVPWAGPPATDARGFLSVMMESTVNPDLEPTAATTLANRNFLMISRDYCNLQARFGYHFCTVEAMATDNPHENYVTFQFKGGAASADRRALRARFVGEVLEARGFRADVKDDALFASLEGLPKDRILTLVRGVGYLLIHTRQIDMVAHNERVFGPIRDRIAADLARIAPVT

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Crispr_ID: NC_011769_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011769_5

2874340-2874446

Orphan

Consensus_repeat	Method
CGACGGGAATCATCCGAATGCCCCG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_011769_5

>merge|NC_011769|5|2874340-2874446|CRISPRCasFinder
CGACGGGAATCATCCGAATGCCCCGGCGGGCGGTGCCCCCCGCCGGAGAACGAAACTCCGACCACGCCAGGCGCCCGGCGAGCGACGGAAATCATCCGAATGCCCCG

>NC_011769|5|5|2874340-2874446|CRISPRCasFinder
CGACGGGAATCATCCGAATGCCCCG	GCGGGCGGTGCCCCCCGCCGGAGAACGAAACTCCGACCACGCCAGGCGCCCGGCGAG
CGACGGAAATCATCCGAATGCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011769.1\|WP_012613400.1\|2880397_2881300_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NC_011769.1\|WP_012613390.1\|2870590_2871583_+\|permease	unknown	unknown	gnl\|CDD\|223773
NC_011769.1\|WP_012613389.1\|2869586_2869955_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NC_011769.1\|WP_012613401.1\|2881457_2882204_-\|tRNA-2-thiocytidine-biosynthesis-protein-TtcA	unknown	unknown	gnl\|CDD\|238951
NC_011769.1\|WP_012613394.1\|2873901_2874234_+\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|376721
NC_011769.1\|WP_012613388.1\|2868301_2869330_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|185103
NC_011769.1\|WP_012613403.1\|2883087_2884212_+\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237668
NC_011769.1\|WP_155860687.1\|2879623_2880238_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239489
NC_011769.1\|WP_041728788.1\|2878000_2879374_+\|FliI/YscN-family-ATPase	unknown	unknown	gnl\|CDD\|274607
NC_011769.1\|WP_012613404.1\|2884468_2885122_+\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_012613397.1\|2877141_2877906_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|180763
NC_011769.1\|WP_012613387.1\|2866611_2867733_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340837
NC_011769.1\|WP_012613393.1\|2873444_2873882_+\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|235556
NC_011769.1\|WP_012613392.1\|2873034_2873445_+\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|171613
NC_011769.1\|WP_012613396.1\|2876138_2877155_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NC_011769.1\|WP_012613395.1\|2874550_2876170_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NC_011769.1\|WP_012613386.1\|2863671_2864697_+\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|100033
NC_011769.1\|WP_012613402.1\|2882853_2883081_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NC_011769.1\|WP_012613391.1\|2871814_2872375_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NC_011769.1\|WP_012613385.1\|2862569_2863667_+\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892

Protein	Function_ID	Function_description	E-value
NC_011769.1\|WP_012613400.1\|2880397_2881300_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.69401e-46
NC_011769.1\|WP_012613390.1\|2870590_2871583_+\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	5.47816e-70
NC_011769.1\|WP_012613389.1\|2869586_2869955_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	5.02421e-15
NC_011769.1\|WP_012613401.1\|2881457_2882204_-\|tRNA-2-thiocytidine-biosynthesis-protein-TtcA	gnl\|CDD\|238951	cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.	1.99066e-56
NC_011769.1\|WP_012613394.1\|2873901_2874234_+\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|376721	pfam02049, FliE, Flagellar hook-basal body complex protein FliE.	1.49587e-23
NC_011769.1\|WP_012613388.1\|2868301_2869330_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|185103	PRK15181, PRK15181, Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC.	3.0951e-155
NC_011769.1\|WP_012613403.1\|2883087_2884212_+\|molecular-chaperone-DnaJ	gnl\|CDD\|237668	PRK14301, PRK14301, chaperone protein DnaJ; Provisional.	0
NC_011769.1\|WP_155860687.1\|2879623_2880238_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239489	cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	5.7794e-32
NC_011769.1\|WP_041728788.1\|2878000_2879374_+\|FliI/YscN-family-ATPase	gnl\|CDD\|274607	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility].	0
NC_011769.1\|WP_012613397.1\|2877141_2877906_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|180763	PRK06937, PRK06937, HrpE/YscL family type III secretion apparatus protein.	7.86313e-15
NC_011769.1\|WP_012613387.1\|2866611_2867733_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340837	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.	4.56858e-131
NC_011769.1\|WP_012613393.1\|2873444_2873882_+\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|235556	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed.	3.43107e-51
NC_011769.1\|WP_012613392.1\|2873034_2873445_+\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|171613	PRK12621, flgB, flagellar basal body rod protein FlgB; Provisional.	8.60418e-90
NC_011769.1\|WP_012613396.1\|2876138_2877155_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	3.83255e-116
NC_011769.1\|WP_012613395.1\|2874550_2876170_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	1.58334e-168
NC_011769.1\|WP_012613386.1\|2863671_2864697_+\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|100033	cd02197, HypE, HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	4.83999e-170
NC_011769.1\|WP_012613402.1\|2882853_2883081_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.48749e-20
NC_011769.1\|WP_012613391.1\|2871814_2872375_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	2.58236e-12
NC_011769.1\|WP_012613385.1\|2862569_2863667_+\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0

>NC_011769.1|WP_012613394.1|2873901_2874234_+|flagellar-hook-basal-body-complex-protein-FliE
MSIQAVGLKAYSNALGNFTKAEQATRATAAPAASGVQAKSFTNTLSESLTKVNEMQTEKSQMIQAFASGETQNVHELMITLQKAGLAVNMTSAVRNKVMEAYKELSRIQF
>NC_011769.1|WP_012613393.1|2873444_2873882_+|flagellar-basal-body-rod-protein-FlgC
MDFMTAIDIGASALNAERTNMNIISMNLANVKTTRTEQGGPYRRKTTIMAAQDIDDPFAKHMQGALDRELKGVRVMHVATDSRPLKRVYEPGHPDADQDGFVAYPDINVVEEMASLMTAQRGYEANVTTIDTVKAMYTKALEISR
>NC_011769.1|WP_012613392.1|2873034_2873445_+|flagellar-basal-body-rod-protein-FlgB
MKSLYEPHVNLVGKVMDMQLQRQNVVMSNIANVRTPGYKPRELEFEKQLQSALGLDAKGRMTRTEQNHLPSEFSADGFNADWEKAAKPRVIHGEDRVNLDKEMAKMAKNSLHYSALTTVIRGNLEGVKNIIQEGQK
>NC_011769.1|WP_012613391.1|2871814_2872375_-|tetratricopeptide-repeat-protein
MSNHLDYEINKELGECYLFMGDLEKAEEYYRKAAGSNGVHPDPYLGLATIAVQRGNLEAALVLYRKAANIEANDKSLAGMGLVEMETGAHAEAFDHFVAALGMNPGNLVAMNGLLRLGYHLGRIEEVVAHLRAFLELSPEKDNVRFSLAGCLISLGRKDEARAELEVILDRAPDHADAREMYALIG
>NC_011769.1|WP_012613390.1|2870590_2871583_+|permease
MAVCLAAWWAVYLNLPAASRSLTYGMLGLTPGSHLGEAVEFFLYDTPKVLMLLSLVVFGIGLVRSFFTPQRTRRLLAGRGEAVGNVLAALLGIVTPFCSCSAVPLFIGFVSAGVPLGVTFSFLVSAPMINEIAVVMLYGLLGWKVAALYAGTGLAIAIVSGWIIGRLGMERHIEGWVLQVRAEAEQMHDAGLSWSGRIDYGVQAMRDIVGKVWPWVVLGIAVGAGIHGYVPEGFMASIMGRGAWWAVPLAVAIGIPMYSNAAGMIPVVQALLGKGAALGTVLAFMMAVIALSLPEAVMLRRVLKPRLVAVFFGVVGLGIMLVGYLFNALV
>NC_011769.1|WP_012613389.1|2869586_2869955_+|winged-helix-turn-helix-transcriptional-regulator
MQMIAPQRTAAHRRLIEAQADIFKALGHPSRLLMVEELTRGERCVCELQALVGSDVSTVSKHLSILKGADVVRDEKRGANVYYSLSLGCVRSFLECTGRHIDQAAQVLSQDLARLAALRSGD
>NC_011769.1|WP_012613388.1|2868301_2869330_+|NAD-dependent-epimerase/dehydratase-family-protein
MTRYTALMQELEAAPRTWLVTGVAGFIGSNLLETLLMHGQKVVGLDNFATGYQRNLDMVREIVGADLWRNFRFKEGDIRNLEHCREVCEGVDHVLHQAALGSVPRSIEDPILANESNISGFVNMMVAARDAKVKTFVYAASSSTYGDEPTLPKVEDKIGKPLSPYAVTKYVNELYADVFATCYGMKAIGLRYFNVFGKRQDPFGAYAAVIPQWFASLLRGETVFINGDGETSRDFCYIDNCVQANLLAATATDEAALNTVYNVAFGERTDLNQLFDLIREEVSRHKPEAATAKPEHREFRFGDVRHSLADISRAHTRLGYEPVYSVRQGLRLSGDWYAANLK
>NC_011769.1|WP_012613387.1|2866611_2867733_-|glycosyltransferase-family-4-protein
MKVAILGNQARAMVNFWSVLIRRLRALGHEVLCIVPDADTDTEGRAALEAMGVRVAGYPLDRKGLNPVRDAATFAALYRVFRQERPDVAFCFTIKPVIYGATAAALARVPARYAMITGLGYMFEADTPIKRMLTRVAALLYRVALACVRTVFFQNMEDRRVFEDNHIIPHSTSVAMCRGTGVALDHFAQAEPVLDPPTFLLVGRLLEAKGLREYAGAARLLKAKHPDARFRVLGPPESGPGSVPLAEVEGWTREGIIEYLGQTRDVRPYVADASVVVLPSWREGTPCSVMEGMSMGRAAVVTDAPGCREVVEDGVNGFRVPLRDPQALAAAMERFITDRNLIARMGQAGRRLAETEFDADKVSEHILRVMRLA
>NC_011769.1|WP_012613386.1|2863671_2864697_+|hydrogenase-expression/formation-protein-HypE
MAGDTLLLDYGSGGKAAHRLIGELFLKHFDNPVLRTLDDAARLELTGPLAMSTDSYVVDPLFFPGGDIGTLAVHGTVNDVAMLGARPRYLSCGFILEEGLDMEVLERIVASMGNAAREAGVCIVTGDTKVVPRGMADKVFINTTGIGEIIANPSPSGHSARPGDAVIISGSMGDHGLTILSHREGLNFSADVRSDSAALNGLTERLLLEVGDIHVLRDPTRGGLATTLNEIAGQSGVVMRIAERDIPVRDAVREGCSFLGLDPLYLANEGKLICILPQEKADAALAVLHQSPLGADAARIGTIVAADGAGPGRAGQVILETPMGGHRLLSMLEGEQLPRIC
>NC_011769.1|WP_012613385.1|2862569_2863667_+|hydrogenase-formation-protein-HypD
MSVNFSTAFKDPDLSRGLIERLHRALDRPLRFMEVCGTHTVAIFQSGMRPLLPAGVRHLSGPGCPVCVTHESEVAAYLQLAEKPGVIIATFGDLMRVPGPGGDNLKLAQAKGARVEIVYSAHDALKLAADNPGDTVVFLGIGFETTAPTVAATVLMARQQGLANFCVLSFHKLVPPALRALLADPDCAVDAFLLPGHVSTILGMEPYRFVADEFRTPGIIAGFDPVDILQALLIMVEQRKTGEFAIVNSYRRAVDDAGNPRAREILDTVFQTADALWRGIGCIPGSGLVFRPEFEQYDAMARLGLTLPEARPIAGCKCGDVLKGKMQPCDCPLFAKACTPAKPVGPCMVSTEGSCAAYFKYNVEA
>NC_011769.1|WP_012613395.1|2874550_2876170_+|flagellar-M-ring-protein-FliF
MAPALADVIQKAKGFWERISISQRIFIAGLAVAVVAVFFGLVFWMNRPDYRVLYSNLSPEDASRVVKLLQADKVAYKLESGGSSITVPADKVYDLRLKVAGEGNLVGQGIGFEIFDQVKVGQTDFVQKINYQRALQGELSRTISEFPNVESARVHLVIPHRSLFIEEQQKPSVSVVLKLRDSSKKLESKDVQAIVNLVVMAVEGLDKYKVSIADTTGKILYAPDEDGSITGMTTTQLDHKLRMQQTLERRIEELLYPVLGAGKIIAKVNADLDFSQRTIRKELYDPEKTVVRSEQRSEESQRGRSNLEAGSPDANFRGDSPTGGASTQEGNRETRTTNYEINKEEQNIVAQVGDISRLTVAVIVDGTYEKGADGQWAFVPRKAEDVERIRQLVANAVGYDRARGDTIEVSSISFGGPDVPQESSLPQLVMDYALRLGKPLLNALLVFLFLVLVVRPVVLAMIRPRVEGEMIEGLEGLPEGEERLALIEGDEEVDALDALKKIEDIKAHALQMAEQNMDQAVSIIRSWLKHGDGPKVGAA
>NC_011769.1|WP_012613396.1|2876138_2877155_+|flagellar-motor-switch-protein-FliG
MATDQRLEQLKGPQKTAILLLALGDKFTAEIFKRMERQEIAAVSKAIVELDTVPKELVEDVLREFHHALVTGQDMIAGGAEAVKRMLMKNLDSETAKYIMDSLNLDSGPAPFRELGNVSPRLLAQILRNEHPQTLALILGHMHPDKAAELLTNLPAGVRPEVLMRLARLEAVPEDMLMEVDKVLQSQLIAMGGKEGKKVGGVPSVAEILNAVDRATEEEVLAEIEEESSQMAEDIRNLMFVFEDVKALDDRGIRELLKEISNEDLTMALRGASEDLRDKFFKNMSERAATMIREDLEIMGPTRLSDVEGAQQNVVKTVRRLETEGRIIVGRGGGDVFV
>NC_011769.1|WP_012613397.1|2877141_2877906_+|flagellar-assembly-protein-FliH
MSSSDSGKPERWGTIFMGPSPFAETTLSGMEGANPRPLWDETTEEEYMARVRAKAEARAREVLDKAAEVLAQARAEAEVLRAAAHEQGRNDGYAEGMAQAQHELDEFRAAMGESVSAVLAAIQGQCSSIFAAWRGDLVDLMRTAVERSVGLVVDAERAAVLETLFVKSVQALESRRTLTIRVNPEDEPAVADIIAATKDRFPGLEAWSVRGDAGIGPGGMVVESRDGMVDNTIETRRRIIEDVLAGLTLPEDRP
>NC_011769.1|WP_041728788.1|2878000_2879374_+|FliI/YscN-family-ATPase
MSGLDPAACQRLLGEVQAMQTYGKVTKVVGLVAEGCGIKAPLGAVCHMLPEGCETGLVGGAVRQGAAPDPATCEGIAAEVVGFRDGNLLFMPYGDLRGIRPGSLIRNTSLPPVFPVGDALLGRAFDAFGAPLDSGAHVVTTGVAPLYASPPNPLARPRISDPLDVGVRVINSLLTLGKGQRVGIMAGSGVGKSTLMGMMARYTVADVNVIGLIGERGREVVEFMEKDLGPEGMARSVLIVATSDQSPLVRMRAAYAATAVAEFFRDQGKDVLLMMDSVTRFAMAAREVGLAVGEPPTTKGYTPTVFAQLPKLLERAGRSEKGTITGIYTVLVDGDDFNEPIADAVRSILDGHIVLTRDLADMGHFPAIDVLRSISRLRSDICAKNVVDAGRVITRHLATFRKAEDMINIGAYAQGSNPDIDKAIAMNGPINAFLRQDVTDAAPLADSFAQLQGLAAG
>NC_011769.1|WP_155860687.1|2879623_2880238_-|phosphatase-PAP2-family-protein
MPLVSSTLLLWVAIAACGALYLTRSGKAGLRPLLALLLVVGIAAGLADASSNVFKKATDRVRPLKALPMVHYRDGGEWRQNPADFKQRKNKGDSFVSAHAANTMAVAVAVYAMLPGLGAACAGRRRDDAPSGPSGPSATNAASPRPPSRLLYLAFLLPLMVGYSRLYLGKHYPSDVLGGWLVGLFAGCAAVWAWRLATGQRRTE
>NC_011769.1|WP_012613400.1|2880397_2881300_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MLLGKYHIVILKERDGAHRNLRMRGWFGFAVVCLVLALAGANVWLWGFYTENASLQRRLAEAERTVEEQNGQMLNMVGKVRTLQADLSRVQQFDSKLRLMMNMEKDPGEIASMGGSRSEDFSKSYLPLHRQELLARKMHSFLQQLSTDVRLEEVRQQELVRTLRDNREVLAATPSIWPADGYISSTFGMRVSPFTGKGEFHKGIDVINRPGTPIYSPARGTVTFAAVDGAYGNCVVLQHGGGLATRYAHMQRFVLKEGQTINRGDLIGYIGNSGRSTGPHLHYEVRLNGVCVNPMRYILN
>NC_011769.1|WP_012613401.1|2881457_2882204_-|tRNA-2-thiocytidine-biosynthesis-protein-TtcA
MPREKLSYAQKQCVTAAGKLMQQTSMIHPGARIGVAVSGGMDSWVLLQVLKLRQRIVPFRFEIMALHVNPGFDPHNHAPLLPWLRANGVASHIEVTDHGPVAHSPANLRNSPCFYCAKLRRTRLFELCKQYGLTHLAFGHNADDLVTTFFMNLVQTGRVDGMSMKEAFFGGRLTVIRPMMLVEKPVIARAVKQWNLPVWTNPCPSAFDSRRSEMTDEVKELCKGSKFAKANIFNGLIRWQLGLTPSDQ
>NC_011769.1|WP_012613402.1|2882853_2883081_+|DNA-directed-RNA-polymerase-subunit-omega
MARITVEDCQERVDNRFLLVQMAIKRVHQYREGYEALVDSRNKEVVTALREIAAGKVLPDEEARYVETEEDFRAE
>NC_011769.1|WP_012613403.1|2883087_2884212_+|molecular-chaperone-DnaJ
MSQRDYYEVLGVARDASEDEIKRQYRKLALQYHPDRNPDNPEAEQMFKEAAEAYDVLRDADKRARYDRFGHAGLNGNGGGHGFANADDVFAHFSDIFGDLFGFATGSSRMRGPRPQAGADLRYNLSISFRQAAKGDEVTLRLPKKVTCDECNGSGAAAGTKPETCRHCGGNGQIRQSQGFFQIAVPCPVCRGEGQVIPTPCPKCKGSGILQQVRELAVRIPAGVDTGNRLRLRGEGEPGLHGGPPGDLYVVVSVEQDKTFRRQGQDLVITHEVSFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLTDQGLPYLGHHQKGDLLVEVRVLTPVSLTKKQEELLREFAKLEEGKPFEKVKKVARKIGKAMGME
>NC_011769.1|WP_012613404.1|2884468_2885122_+|hypothetical-protein
MIADVRSGALFRAESLFAEHVCDAAVLAGFDVSTDAVRRILAGDPEAPASPDARTFVLRQAQALGWVLRRVRSGTFDLTWGTARAVNALLNGAPHDEPGEGAGSAGQPPAREPLPGVAIGPDASDPLEEAVRVFLELAVRRPFAGGNVRTGYLLAEGAVLRAGLPAIGVPGPLRQEFDDLMRRCRRRSAGEGPADAGVNGAEVEAMAGFFRRCGRWP

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Crispr_ID: NC_011769_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011769_6

3733535-3733674

Orphan

Consensus_repeat	Method
ACGGCGGGCCTCGCGGGCTCGGC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NC_011769_6

>merge|NC_011769|6|3733535-3733674|CRISPRCasFinder
ACGGCAGGCCTCGTGGACTCGGCACTGCCTGGCCATATTACGGCGGGCCTCGCGGGCTCGGCACCGTTCGATGGCATGGCGGCAGGCCTCGCGGGCTCGGCCTCGTTCGACGGCATGACGGCGGGCCTCGCGGCCTCGGC

>NC_011769|6|6|3733535-3733674|CRISPRCasFinder
ACGGCAGGCCTCGTGGACTCGGC	ACTGCCTGGCCATATT
ACGGCGGGCCTCGCGGGCTCGGC	ACCGTTCGATGGCATG
GCGGCAGGCCTCGCGGGCTCGGC	CTCGTTCGACGGCATG
ACGGCGGGCCTCGCGGCCTCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011769.1\|WP_015946588.1\|3743180_3744251_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270305
NC_011769.1\|WP_015946586.1\|3741346_3741901_+\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_015946577.1\|3730090_3731137_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NC_011769.1\|WP_015946581.1\|3734656_3735172_+\|hypothetical-protein	unknown	unknown	unknown
NC_011769.1\|WP_015946572.1\|3724328_3724952_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|372434
NC_011769.1\|WP_015946576.1\|3728451_3729744_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|183211
NC_011769.1\|WP_015946585.1\|3740715_3741174_+\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|225675
NC_011769.1\|WP_015946570.1\|3722261_3723152_+\|flagellin	unknown	unknown	gnl\|CDD\|139237
NC_011769.1\|WP_015946573.1\|3725137_3726358_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NC_011769.1\|WP_015946578.1\|3731468_3731897_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NC_011769.1\|WP_015946571.1\|3723374_3724010_+\|DUF2238-domain-containing-protein	unknown	unknown	gnl\|CDD\|226173
NC_011769.1\|WP_015946575.1\|3727685_3728438_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NC_011769.1\|WP_015946591.1\|3746724_3747585_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NC_011769.1\|WP_081437360.1\|3735271_3736231_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|223570
NC_011769.1\|WP_015946574.1\|3726357_3727689_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NC_011769.1\|WP_015946584.1\|3740245_3740512_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NC_011769.1\|WP_041729120.1\|3731995_3732328_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107221
NC_011769.1\|WP_015946592.1\|3747859_3748771_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176506
NC_011769.1\|WP_015946587.1\|3742085_3743000_+\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NC_011769.1\|WP_041727660.1\|3745882_3746728_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097

Protein	Function_ID	Function_description	E-value
NC_011769.1\|WP_015946588.1\|3743180_3744251_+\|extracellular-solute-binding-protein	gnl\|CDD\|270305	cd13587, PBP2_polyamine_2, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold. This family represents the periplasmic binding domain that functions as the primary polyamine receptor of an uncharacterized ABC-type transport system. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.2659e-153
NC_011769.1\|WP_015946577.1\|3730090_3731137_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00654891
NC_011769.1\|WP_041727660.1\|3745882_3746728_+\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	3.398e-68
NC_011769.1\|WP_015946572.1\|3724328_3724952_+\|HD-domain-containing-protein	gnl\|CDD\|372434	pfam13023, HD_3, HD domain. HD domains are metal dependent phosphohydrolases.	1.49265e-25
NC_011769.1\|WP_015946576.1\|3728451_3729744_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	2.21695e-36
NC_011769.1\|WP_015946585.1\|3740715_3741174_+\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|225675	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane].	2.34984e-28
NC_011769.1\|WP_015946570.1\|3722261_3723152_+\|flagellin	gnl\|CDD\|139237	PRK12802, PRK12802, flagellin; Provisional.	6.79054e-59
NC_011769.1\|WP_015946573.1\|3725137_3726358_-\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	8.11042e-36
NC_011769.1\|WP_015946578.1\|3731468_3731897_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	7.99234e-30
NC_011769.1\|WP_015946571.1\|3723374_3724010_+\|DUF2238-domain-containing-protein	gnl\|CDD\|226173	COG3647, COG3647, Predicted membrane protein [Function unknown].	3.60344e-63
NC_011769.1\|WP_015946575.1\|3727685_3728438_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	6.24956e-107
NC_011769.1\|WP_015946591.1\|3746724_3747585_+\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	7.18931e-58
NC_011769.1\|WP_081437360.1\|3735271_3736231_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|223570	COG0496, SurE, Predicted acid phosphatase [General function prediction only].	7.38478e-59
NC_011769.1\|WP_015946574.1\|3726357_3727689_-\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	2.8452e-40
NC_011769.1\|WP_015946584.1\|3740245_3740512_+\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	1.75983e-38
NC_011769.1\|WP_041729120.1\|3731995_3732328_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107221	cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.	9.68604e-23
NC_011769.1\|WP_015946592.1\|3747859_3748771_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	4.51294e-75
NC_011769.1\|WP_015946587.1\|3742085_3743000_+\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	6.17965e-98

>NC_011769.1|WP_041729120.1|3731995_3732328_+|Hsp20/alpha-crystallin-family-protein
MERFSPATDIIEQADGFHILMDLPGVPPDGLTIDLEENEVTVTGRSSYAPAGNDRRMHAEFDAVEFVRTFTLSDMVDRERIRAVLKDGVLNLFLPKAEAAKPRRIEISQG
>NC_011769.1|WP_015946578.1|3731468_3731897_+|Hsp20/alpha-crystallin-family-protein
MVIDFSTLYDMPKSFERMFDEMSRLHSFSSRRTAYPLLNVHENEDGYTVDVSVPGVAPGDVELTLTDRNLIIKGERKATEGRYFRQERLSGSFQRILSLNVPVDRDRVSARSENGILRVTLPKAEAVKPRKIAVEAQAGGVQ
>NC_011769.1|WP_015946577.1|3730090_3731137_-|hypothetical-protein
MRISVDVEATLPENLRGPEGGTGPQAAREELGVIAGAARGLSDVVRIARILVPEDFGAALAELAPDRHAPRPRTASSASAAPTAPAAPTAPKATTATTAPIAPTAMTAAIPAPQGWVLVFHPGIYGPEHDAHMRYALYWRELTRLVNKGRLPVPLRTADGAPRQDRHAVLLTAVSRLFGEYDAARKAWDFRDGLLRKVLRQELSERARTALLHAFAADLGHATSADARTWLRMLADDHARTGDTATYLRAVRPLVMRLSLALSHAWATLDHFPDLAAPGAELLHRAELPAAARELHSFFRNRHVAGSPDMEPGTELLAELWAGFGLRLADGPGGPGEPGRLTALRPGD
>NC_011769.1|WP_015946576.1|3728451_3729744_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MRKKIIIGLAIALAVALIAAYFLSRREGRTEITQTATVSRATVRKVLDATGIIKPEVGAIVKTGTRFTGIIRTMHVKVGDAVKAGQIIAEIDDREQRAQQDQAEATLRKAQSELARVEASYPLQIREAEAQMAAAQADYDYAALNLKRRRTLVEQDLDARNTLDEAKQQSETTGNTLAARKATLDRLQRESTLAIKTAREAVKEAQSALEATNVRLSYSVIRAPLDGVVSEVTAQGGETVVAGFQVANLITVLDPTRLEMWIYVDETDVGQITPGMTVEFRVDSLPGRTFGGTVNQIYPQPEIRDNIVYYRALVRLTPQTSTDLRPEMTTQCRIVVQQKDNVLAVPNEALKWVGGEQVVFVQGDGAIRRVRPRIGLAGAETSEVLEGLAEGDVVGTKVVLPTSRGGGRPEQTPGGSGGPGGGPGSGRPGR
>NC_011769.1|WP_015946575.1|3727685_3728438_-|ABC-transporter-ATP-binding-protein
MSTPPISTPGGAPGAPLVELSGITRSFTQGDLTVDVLRGVSFSIAHGEFVAIQGSSGSGKSTLLHILGLLDSPTSGRYVLDGHDVSHLDDDARSEARNQLTGFVFQNFYLIPYATALDNVLLPGLYSHKNLRAQRKRAENLLHRVGLGDRMDFVPARLSGGQQQRVALARALLNDPALILADEPTGQLDSTTSADILDLLADINRTGKTVVVVTHDAETAARARRRIVIRDGVIESDGLQGGAAAGGAPA
>NC_011769.1|WP_015946574.1|3726357_3727689_-|ABC-transporter-permease
MTPPAGTAPGPAPDPTIGAATGPASGRFGGRSLPALAREGWRAATLGLSALLAYRLRSFFVIAAVSLGIASLTVIVAAVDGASKKADEIADMFGPDAVLVFGGNIVNRAVGARTLTLTWEDAARIRQSLPGAYIVLPMRSKGNVRLKHESNNYDVSLVAGTTENYARAWNWPLVEGRDLTAEDVQRGARVALLGDKPARELFGDESPVGRTFLMSGVPFTVVGLMQYRGMSGGGGNVDDRVVIPLTTLTQRFNMDRRYFRALRVKFEDTAGMDAHVEDLRSLLRHLHRLAPEDPDDFTILTAKEVLKFLSVIKGGLVLFLGVTAAAAMIVGGFVLANLFLLSVTERRVEIGLKKALGAPGRAILLQFLMESLALTLCGAVGGVLLGALMGQMLERLGLIEMVLSAKVFLLALAAATAVGLVFGLRPARQAAALDPIQALRGGE
>NC_011769.1|WP_015946573.1|3725137_3726358_-|ABC-transporter-permease
MQRLRIALRSLAAHRMRTVLAMLGVFLGALALTAVLHISKAMVKKADIETQRLGPNLLQALSGQANFRREGSTRVTGMTTTFSLEDAREILGTVPQVRLGVPYASGSMPVRYGRVKTGSQLMASPPAYAQVRMLETEHGRFYNDEEEATQAKVCVLGYAIAQRLFGDTADAVGKQVFFFRANVLVVGVLPEKGQDVTGANLDEMVFTPLSTYMRRFTNQDWISGVFMNLHDQNDEAVAKATVTDILRRRHHMGPSRKDDFSVISAQDSARLRNQALDLVWTLGVLSSSISFAVGALGILSIMILLVRARRLEIGIRRAVGASRTVIIRQFLAEAGVMAGVGGAAGVLAAVGIVTVVYAVGDFPYLYDPLLIVGACVASVLLGLVAGAYPAWQASRVEVLEVLRNPE
>NC_011769.1|WP_015946572.1|3724328_3724952_+|HD-domain-containing-protein
MTACNPQLNLQGRGRLKRIVDFLNEAGMLRLTPRTGYQFLGTGNENVAEHSFRTAIIGYVLARMAGADPSRTAMLCLFHDFHEARIGDFNYVNRIYNTSKPRDAVVHAAEGTGLEVDMLEFWDDLEASQTPEAQLAHDADQLDLILNLKRELDLGNKYAGKWMESALERLRTEEGRELARTIAETDHTDWWFLGPDRAWWERKNGKE
>NC_011769.1|WP_015946571.1|3723374_3724010_+|DUF2238-domain-containing-protein
MPPQASPGASSRPSRLPEVLAAVFVAVFVVLGIAPYDRTVWYMEVTPVIVIFLLLAGTARKFRFSGAAYLLMAVWLFWHTVGGHYTFERVPFGFITDAFGFARNHFDRVGHFSVGFYAYAFAELLTRRRLAGPVVTMLFGLFAIMAVACGWEILEWLVADAEGGEAGLAFLGSQGDVWDAQKDMLADTLGAVFALALFRLCGRRWGSMDPV
>NC_011769.1|WP_015946570.1|3722261_3723152_+|flagellin
MSLVINHNLMAMNAARNLSSSYGNLSTSVRRLSSGLRVGAASDDAAGLAIRELMRSDIAALNQGVRNANDAISLIQTADGALGVIDEKLIRMKELAEQAATGTYTSDQRLIIDSEYQAMASEITRIANSTDFNGIHLLNGNLSGATHDGSGLVSTGKLKVHFGSANDCSEDYYYIRIGTSTASALGVGSQAAEGKGKSISTQSAAQAALEGIENAIISKDKIRANLGALQNRLENTISNLQIQSENLQAAESRISDVDVSSEMTEFTRQQILTQAAVAMLSQANSLPRMAMQLLGG
>NC_011769.1|WP_015946581.1|3734656_3735172_+|hypothetical-protein
MRSTGLAAGAIIEAKCTRCNDITGHVIVAMVGGEVVKVECRACGSVHKYRPQKKDAPRNTAPSVRKVRAGATRAEAVDVSNSRSEAARKAAATRANQRAARDAEATEVAWKVAMTRNPAEHNRKYSMSESYEVGEIIDHPVFGPGEVRAVVRPDKVEILFQEGLKVLRCVC
>NC_011769.1|WP_081437360.1|3735271_3736231_-|5'/3'-nucleotidase-SurE
MARTGQVSRMGRMSRTPAPPQQPNRAGPPRVGNTPGNTPGNIQATHHPQEDCMTTPRILLTNDDGVHSPGLLAAAEALHPLGGVDVFAPLRQQTAMGRAQTGDRNAILQQVELAVAGAPLRAWACDASPAATVGHGLKVMPGYAPALLVSGINYGENLGASITSSGTVGAALEGACRGIPALAVSMETGIESHHAYTEQDWSAAMHFLALFAGMVLERGLPGDVHVLKIDVPAGATPDTPWRLTRLSPDMYYESRLAVPSLGSRLGDATVTKGPAPGESPETDVYALSVDRVVSVTPLTLDFTARTAFGDIRAWLDGGR
>NC_011769.1|WP_015946584.1|3740245_3740512_+|RNA-binding-protein
MAKSIYVGNLPWSATEDEVRSLFNTYGTVLSVKLVTDRETGRARGFGFVEMDDAAAAAAIEALDNTPFGGRNLRVNEAQPKAPRPPRY
>NC_011769.1|WP_015946585.1|3740715_3741174_+|glycine-zipper-2TM-domain-containing-protein
MRQLKALVALLIVGLALSGCAQTYGGGTYKGGQTRMSHTVQYGTVEQINDSVIEDNPSGLGALGGAVVGGVLGNMIGGGKGRVLTTLGGAVAGGAAGYAGEQAMKTKKAIEITVRLENGQVMSVVQEPDETFMVGDRVRILTGSDGSARVRH
>NC_011769.1|WP_015946586.1|3741346_3741901_+|hypothetical-protein
MLDPRECILYSGGAAGTETCFGATAEAYGLQEVNYSFEGHQVERMRGVRVLTSEELALKDVSLTYVSRLMNRQYTRAPLFRKVLQSICWQVSSGHEVFVVGEVMEDGTVKGGTGWGAEFAKICNKPLFVFDQVKNGWFRWEQDAWLPEAAPRITHRHFTATGTRFIEDSGKAAIEALFARSFSR
>NC_011769.1|WP_015946587.1|3742085_3743000_+|EamA-family-transporter-RarD
MPPQPEQRTTRAGLWGALGAFGLWGLLPLYWKLVQQVPSSEILCHRIVWSVMFLLPLVLLGGRLAEVRAALASRRSLATIAGSSLLIGGNWFLYIWAVNSDMVLETSLGYYMTPLVNALLGALVLGERPSRVQLAAIVIAAAGVLSMLVSYGRLPWVALVLAVSFSFYGLLRKLVKVESIPGLFIETMLLAPVAVGYLGWLAWQGGGALGHQGLATDLVLVGAGIATSTPLLCFAFAARRLRLTTLGVMQYIAPSIAFLLGAFVFREPVTSAHLLTFGCIWTALALYTAEGLRAARSGYRHAVR
>NC_011769.1|WP_015946588.1|3743180_3744251_+|extracellular-solute-binding-protein
MTKKMLLLLSMFTVLLLPCLGNAAPKEFRLLTWKGYAPAELVEKFEKETGYKVQVTYSNNEEMIAKLRATRGGGFDLAQPSQDRISSVQESFGLYQPIDFGRIEAARFIPSMLDAVKKNTLVKGKSYAVPFCWGTDGLIVNRKFAPDAKSFADLLDAKYAGRASYRLKRPTLIAQAFGMGIDPFKLYADEAAYQKMLDQVEGKLIAAKGVVKNYWTNGDALLESMRSGEVHIAQAWDNGGFKLHAENPDIDFVAPTTGALGWIDTFAIPAKADNADAAYKWINFMMRPENAAVFTNAEDTPTAAVGVGERLKPTFRADFERCYPQQVIDNIKWYPPVPAKLEAMEGKALDRVKAAQ
>NC_011769.1|WP_041727660.1|3745882_3746728_+|ABC-transporter-permease
MRLTLALFLTPVVLWLGLLIVLPHLDLLIMSFRMDPAFGDDGWSLENYHQFFAEPIYWLTFVRTAGYSVLVTLLTFLVSLPVAFYVTKVVARNTSRFLLTMLLLPFWVSELVRVYGWMILLRESGVLNHWLTALGITGAPVEMLYNDATMIMGLVYTSMLFMVVPLVSVLESLDDSLIEAACDLGAGPWTIMRTIVVPHCMPGIMSGAIVVFMLTLGNYLTPNLMGGKNSLWFTEQIYNQFIASFNWNQGAAFGFLLLALSSCIIWLGLRLTGQKLSRVVQ
>NC_011769.1|WP_015946591.1|3746724_3747585_+|ABC-transporter-permease
MIRSLPRSRGYTMGYGLYVTLYFVFLFAPLAVTCVLAFNDSQFPSLPWKGFTLDWFLADLPARTGIFHDRGNLSSIFTSAQTAILVSALATLVGTCAAFLFEQEEFPLKGALYFLMLAPLVVPGVILGISILIAATTAGTFMEDVLGIDVGILRPGFWLVVLGQFSFITTFVTLVVSARLKKFDRTLEEAALNLGATRLEVIRYITLPFLRTAIIGAGAVAFLMSFENFNTTLFLVGSEPTLPINLYLQVRDGSTPVINAISFLLIVGTSLVACVNLYAGRKPEAS
>NC_011769.1|WP_015946592.1|3747859_3748771_+|glycerophosphoryl-diester-phosphodiesterase
MSGATTPREGYYALREGRVLCIAHRGARSVAPENTILAAQRGLEEGADLWELDVQLTADGHLVVVHDDTLDRTTDVAARPEYAGRAPWRVCDFTLDELRGLDAGSWYRTADPFGLVGSGGVTADDLALFPGLRIPTLDEALAFTADHGWRVNVEIKDMTVNADGSPGSPTYPGDEAVVRAVLECIRAHGLTERVLLSSFRHDCLRHAARMEPALALAALVEDVRPDDPVALCRDLGVVAYHPGDDIVTEADVAGLRAMGVAVNVWTVNEEADMRRFMDWGVAGLITDVPLLCWGLLRERGLSE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011769_4	4.52\|2448089\|31\|NC_011769\|CRT	2448089-2448119	31	NZ_CP039899	Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence	94127-94157	5	0.839
NC_011769_4	4.52\|2448089\|31\|NC_011769\|CRT	2448089-2448119	31	NZ_CP039890	Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence	94127-94157	5	0.839
NC_011769_4	4.8\|2445189\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2445189-2445221	33	NC_022061	Mycobacterium phage KayaCho, complete genome	21152-21184	6	0.818
NC_011769_4	4.15\|2445651\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2445651-2445683	33	NC_015583	Novosphingobium sp. PP1Y plasmid Mpl, complete sequence	347843-347875	6	0.818
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NC_008703	Mycobacterium sp. KMS plasmid pMKMS01, complete sequence	254914-254946	6	0.818
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	466330-466363	7	0.794
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	611718-611750	7	0.788
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NZ_CP045523	Shigella flexneri strain 5908.2 plasmid p5908-2	131170-131202	7	0.788
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NZ_CP042618	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-3_MCR3, complete sequence	7073-7105	7	0.788
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1201814-1201846	7	0.788
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NZ_CP044378	Klebsiella pneumoniae strain 2018S06-082 plasmid p2018S06-082-2, complete sequence	45958-45990	7	0.788
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NZ_CP044387	Klebsiella pneumoniae strain 2018C01-239 plasmid p2018C01-239-2, complete sequence	41333-41365	7	0.788
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NZ_CP044371	Klebsiella pneumoniae strain 2018C01-046 plasmid p2018C01-046-3, complete sequence	31338-31370	7	0.788
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NZ_LR134460	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence	5942-5974	7	0.788
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	MG592498	Vibrio phage 1.123.O._10N.286.48.F3, partial genome	14539-14571	7	0.788
NC_011769_4	4.52\|2448089\|31\|NC_011769\|CRT	2448089-2448119	31	NZ_AP022338	Mameliella alba strain KU6B plasmid pKUB257, complete sequence	190466-190496	7	0.774
NC_011769_4	4.2\|2444792\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2444792-2444825	34	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	740681-740714	8	0.765
NC_011769_4	4.5\|2444990\|35\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2444990-2445024	35	MN096364	Mycobacterium phage Tomaszewski, complete genome	47249-47283	8	0.771
NC_011769_4	4.5\|2444990\|35\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2444990-2445024	35	MF919541	Mycobacterium phage YassJohnny, complete genome	47288-47322	8	0.771
NC_011769_4	4.13\|2445519\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2445519-2445552	34	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	254213-254246	8	0.765
NC_011769_4	4.15\|2445651\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2445651-2445683	33	NZ_CP013426	Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence	245214-245246	8	0.758
NC_011769_4	4.18\|2445848\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2445848-2445881	34	NC_011143	Phenylobacterium zucineum HLK1 plasmid, complete sequence	224040-224073	8	0.765
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NC_019848	Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence	886866-886899	8	0.765
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	121949-121982	8	0.765
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NZ_CP021796	Sinorhizobium meliloti strain USDA1157 plasmid accessoryA, complete sequence	89782-89815	8	0.765
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NZ_CP021215	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11c, complete sequence	66454-66487	8	0.765
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	596611-596644	8	0.765
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NC_013545	Sinorhizobium meliloti plasmid pSmeSM11a, complete sequence	99873-99906	8	0.765
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	513163-513196	8	0.765
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	482691-482724	8	0.765
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	596279-596312	8	0.765
NC_011769_4	4.25\|2446311\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446311-2446343	33	NZ_CP013069	Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence	283820-283852	8	0.758
NC_011769_4	4.25\|2446311\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446311-2446343	33	NZ_CP032313	Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence	152566-152598	8	0.758
NC_011769_4	4.25\|2446311\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446311-2446343	33	MN234170	Mycobacterium phage MalagasyRose, complete genome	37896-37928	8	0.758
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NZ_CP022220	Bradyrhizobium guangxiense strain CCBAU 53363 plasmid p53363, complete sequence	472577-472609	8	0.758
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NZ_CP016078	Actinoalloteichus sp. GBA129-24 plasmid pGBA129-24a, complete sequence	16046-16078	8	0.758
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NZ_CP030052	Bradyrhizobium guangdongense strain CCBAU 51649 plasmid unnamed, complete sequence	82693-82725	8	0.758
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NZ_CP030054	Bradyrhizobium guangzhouense strain CCBAU 51670 plasmid unnamed1, complete sequence	264942-264974	8	0.758
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	329810-329842	8	0.758
NC_011769_4	4.50\|2447958\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2447958-2447991	34	NC_008760	Polaromonas naphthalenivorans CJ2 plasmid pPNAP04, complete sequence	89417-89450	8	0.765
NC_011769_4	4.51\|2448024\|33\|NC_011769\|CRISPRCasFinder,CRT	2448024-2448056	33	EU849489	Stenotrophomonas phage S1, complete genome	672-704	8	0.758
NC_011769_4	4.52\|2448089\|31\|NC_011769\|CRT	2448089-2448119	31	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	747675-747705	8	0.742
NC_011769_4	4.8\|2445189\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2445189-2445221	33	NZ_CP007795	Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence	2791-2823	9	0.727
NC_011769_4	4.8\|2445189\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2445189-2445221	33	NZ_KU140623	Sinorhizobium sp. M14 plasmid pSinB, complete sequence	295307-295339	9	0.727
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NZ_LR134461	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence	87825-87858	9	0.735
NC_011769_4	4.28\|2446508\|33\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446508-2446540	33	KX534337	Escherichia phage Greed, partial genome	57614-57646	9	0.727
NC_011769_4	4.45\|2447625\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2447625-2447658	34	MN119376	Streptomyces phage Geostin, complete genome	11993-12026	9	0.735
NC_011769_4	4.45\|2447625\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2447625-2447658	34	MH155868	Streptomyces phage FlowerPower, complete genome	11993-12026	9	0.735
NC_011769_4	4.45\|2447625\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2447625-2447658	34	MN284894	Streptomyces phage Fabian, complete genome	11993-12026	9	0.735
NC_011769_4	4.48\|2447825\|35\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2447825-2447859	35	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	413899-413933	9	0.743
NC_011769_4	4.6\|2445057\|35\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2445057-2445091	35	AB910392	Pseudomonas phage KPP23 DNA, complete sequence	27968-28002	10	0.714
NC_011769_4	4.6\|2445057\|35\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2445057-2445091	35	MK443266	UNVERIFIED: Pseudomonas phage RSP, complete genome	33707-33741	10	0.714
NC_011769_4	4.6\|2445057\|35\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2445057-2445091	35	MK803322	Pseudomonas phage RSP, complete genome	40602-40636	10	0.714
NC_011769_4	4.17\|2445782\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2445782-2445815	34	NZ_CP022567	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence	374930-374963	10	0.706
NC_011769_4	4.45\|2447625\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2447625-2447658	34	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	195781-195814	10	0.706
NC_011769_4	4.45\|2447625\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2447625-2447658	34	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	615535-615568	10	0.706
NC_011769_4	4.45\|2447625\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2447625-2447658	34	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	347174-347207	10	0.706
NC_011769_4	4.45\|2447625\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2447625-2447658	34	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	530381-530414	10	0.706
NC_011769_4	4.45\|2447625\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2447625-2447658	34	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	197817-197850	10	0.706
NC_011769_4	4.45\|2447625\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2447625-2447658	34	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	394931-394964	10	0.706
NC_011769_4	4.1\|2444725\|35\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2444725-2444759	35	KX241618	Xanthomonas phage Xoo-sp2, complete genome	23670-23704	11	0.686
NC_011769_4	4.5\|2444990\|35\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2444990-2445024	35	NC_049384	Enterobacter phage EspM4VN DNA, complete genome	147225-147259	11	0.686
NC_011769_4	4.5\|2444990\|35\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2444990-2445024	35	LC373201	Enterobacter phage phiEM4 DNA, complete genome	147225-147259	11	0.686
NC_011769_4	4.21\|2446049\|34\|NC_011769\|PILER-CR,CRISPRCasFinder,CRT	2446049-2446082	34	NC_008741	Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence	45909-45942	11	0.676

1. spacer 4.52|2448089|31|NC_011769|CRT matches to NZ_CP039899 (Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence) position: , mismatch: 5, identity: 0.839

ccatcatg--gccgtctgtgcgtggctgatcga	CRISPR spacer
--atcacgaagccgtcggtgcatggctgatcga	Protospacer
  ****.*  ****** ****.***********

2. spacer 4.52|2448089|31|NC_011769|CRT matches to NZ_CP039890 (Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence) position: , mismatch: 5, identity: 0.839

ccatcatg--gccgtctgtgcgtggctgatcga	CRISPR spacer
--atcacgaagccgtcggtgcatggctgatcga	Protospacer
  ****.*  ****** ****.***********

3. spacer 4.8|2445189|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_022061 (Mycobacterium phage KayaCho, complete genome) position: , mismatch: 6, identity: 0.818

----acgccaccggccagcatcggcgcggtcggtgac	CRISPR spacer
ttcgacg----cggccagcttgggcgcggtcggtgac	Protospacer
    ***    ******** * ***************

4. spacer 4.15|2445651|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_015583 (Novosphingobium sp. PP1Y plasmid Mpl, complete sequence) position: , mismatch: 6, identity: 0.818

ttgcgctccggccagagcatgacgcac-cgcgtc	CRISPR spacer
ttgtgctccggcccgagcatgacgttcatgcgt-	Protospacer
***.********* **********. * .****

5. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_008703 (Mycobacterium sp. KMS plasmid pMKMS01, complete sequence) position: , mismatch: 6, identity: 0.818

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
cgcctcggcgatcacgcctgcggtggtcgtgaa	Protospacer
***********.**** **********  **.

6. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 7, identity: 0.794

agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
cgccgcttccttcgccgcctcggtgccgttgcgg	Protospacer
 ** .***************** ** *****  *

7. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.788

cgcctcggcgaccacggctgcggtggtgctggt--	CRISPR spacer
cgccccggcgaccacggccgcggtg--accggccc	Protospacer
****.*************.******  .*.**.

8. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045523 (Shigella flexneri strain 5908.2 plasmid p5908-2) position: , mismatch: 7, identity: 0.788

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
ccgctacgcgaccacggccgccgtggtgctgga	Protospacer
*  **  ***********.** **********

9. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042618 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-3_MCR3, complete sequence) position: , mismatch: 7, identity: 0.788

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
ccgctacgcgaccacggccgccgtggtgctgga	Protospacer
*  **  ***********.** **********

10. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.788

cgcctcggcgaccacggctgcggtggtgctggt--	CRISPR spacer
cgccccggcgaccacggccgcggtg--accggccc	Protospacer
****.*************.******  .*.**.

11. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044378 (Klebsiella pneumoniae strain 2018S06-082 plasmid p2018S06-082-2, complete sequence) position: , mismatch: 7, identity: 0.788

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
ccgctacgcgaccacggccgccgtggtgctgga	Protospacer
*  **  ***********.** **********

12. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044387 (Klebsiella pneumoniae strain 2018C01-239 plasmid p2018C01-239-2, complete sequence) position: , mismatch: 7, identity: 0.788

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
ccgctacgcgaccacggccgccgtggtgctgga	Protospacer
*  **  ***********.** **********

13. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044371 (Klebsiella pneumoniae strain 2018C01-046 plasmid p2018C01-046-3, complete sequence) position: , mismatch: 7, identity: 0.788

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
ccgctacgcgaccacggccgccgtggtgctgga	Protospacer
*  **  ***********.** **********

14. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134460 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 18, complete sequence) position: , mismatch: 7, identity: 0.788

cgcctcggcgaccacggctgcggtggtgctggt-	CRISPR spacer
ggccgcggcgagcacggctgcggt-gtgctcacc	Protospacer
 *** ****** ************ ***** ..

15. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to MG592498 (Vibrio phage 1.123.O._10N.286.48.F3, partial genome) position: , mismatch: 7, identity: 0.788

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
cgcctcagcgaccacggttgcggttgagtttgg	Protospacer
******.**********.****** * *.* *

16. spacer 4.52|2448089|31|NC_011769|CRT matches to NZ_AP022338 (Mameliella alba strain KU6B plasmid pKUB257, complete sequence) position: , mismatch: 7, identity: 0.774

ccatcatggccgtctgtgcgtggctgatcga---	CRISPR spacer
ccatcatggcagtctgtgcgcg---ggccgaggc	Protospacer
********** *********.*   *..***

17. spacer 4.2|2444792|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.765

cacatgccgtcgtggatttcgccctttgtcagcc	CRISPR spacer
agcatgccgtcgtggatatcgcccattggcttcg	Protospacer
 .*************** ****** *** *  *

18. spacer 4.5|2444990|35|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to MN096364 (Mycobacterium phage Tomaszewski, complete genome) position: , mismatch: 8, identity: 0.771

atcctcggtcgccttgacgatgtagaccttgttgc-	CRISPR spacer
ctcctcggtcgccttgaccatgttgaac-cactgct	Protospacer
 ***************** **** ** * ...***

19. spacer 4.5|2444990|35|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to MF919541 (Mycobacterium phage YassJohnny, complete genome) position: , mismatch: 8, identity: 0.771

atcctcggtcgccttgacgatgtagaccttgttgc-	CRISPR spacer
ctcctcggtcgccttgaccatgttgaac-cactgct	Protospacer
 ***************** **** ** * ...***

20. spacer 4.13|2445519|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 8, identity: 0.765

atgtgctggtccgacacggcaagggaagctgctg	CRISPR spacer
atgtgctggtccgccacggccaggcgacccgcgc	Protospacer
************* ****** *** .* *.**

21. spacer 4.15|2445651|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013426 (Burkholderia sp. MSMB0856 plasmid pMSMB0856, complete sequence) position: , mismatch: 8, identity: 0.758

ttgcgctccggccagagcatgacgcaccgcgtc	CRISPR spacer
ttgagcgccggccagagcatgacgctgaacggt	Protospacer
*** ** ******************   .** .

22. spacer 4.18|2445848|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_011143 (Phenylobacterium zucineum HLK1 plasmid, complete sequence) position: , mismatch: 8, identity: 0.765

cccccagctcaccgcacagggcctgcacacgccc	CRISPR spacer
gcgccagctcaccgaacagcgcctgcacgagctg	Protospacer
 * *********** **** ********. **.

23. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_019848 (Sinorhizobium meliloti GR4 plasmid pRmeGR4c, complete sequence) position: , mismatch: 8, identity: 0.765

agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
atggacgctcttcgccgcctcgctcgcggtgatc	Protospacer
*  *** ..*************** *** ****

24. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 8, identity: 0.765

agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
atggacgctcttcgccgcctcgctcgcggtgatc	Protospacer
*  *** ..*************** *** ****

25. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021796 (Sinorhizobium meliloti strain USDA1157 plasmid accessoryA, complete sequence) position: , mismatch: 8, identity: 0.765

agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
atggacgctcttcgccgcctcgctcgcggtgatc	Protospacer
*  *** ..*************** *** ****

26. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021215 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11c, complete sequence) position: , mismatch: 8, identity: 0.765

agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
atggacgctcttcgccgcctcgctcgcggtgatc	Protospacer
*  *** ..*************** *** ****

27. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
atggacgctcttcgccgcctcgctcgcggtgatc	Protospacer
*  *** ..*************** *** ****

28. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_013545 (Sinorhizobium meliloti plasmid pSmeSM11a, complete sequence) position: , mismatch: 8, identity: 0.765

agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
atggacgctcttcgccgcctcgctcgcggtgatc	Protospacer
*  *** ..*************** *** ****

29. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
atggacgctcttcgccgcctcgctcgcggtgatc	Protospacer
*  *** ..*************** *** ****

30. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
atggacgctcttcgccgcctcgctcgcggtgatc	Protospacer
*  *** ..*************** *** ****

31. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 8, identity: 0.765

agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
atggacgctcttcgccgcctcgctcgcggtgatc	Protospacer
*  *** ..*************** *** ****

32. spacer 4.25|2446311|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013069 (Pannonibacter phragmitetus strain 31801 plasmid p.p-1, complete sequence) position: , mismatch: 8, identity: 0.758

agaccgtgaacctcggcaagacgaccatccccg	CRISPR spacer
ggaccgagaacctcggcaagatgaccagcggta	Protospacer
.***** **************.***** *  ..

33. spacer 4.25|2446311|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032313 (Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence) position: , mismatch: 8, identity: 0.758

agaccgtgaacctcggcaagacgaccatccccg	CRISPR spacer
ggaccgagaacctcggcaagatgaccagcggta	Protospacer
.***** **************.***** *  ..

34. spacer 4.25|2446311|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to MN234170 (Mycobacterium phage MalagasyRose, complete genome) position: , mismatch: 8, identity: 0.758

agaccgtgaacctcggcaagacgaccatccccg	CRISPR spacer
cgtatgtgaaccacggccagacgaccatcccga	Protospacer
 *  .******* **** ************* .

35. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022220 (Bradyrhizobium guangxiense strain CCBAU 53363 plasmid p53363, complete sequence) position: , mismatch: 8, identity: 0.758

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
cagctcggcgaccatggcttcggtggtgatcag	Protospacer
*. ***********.**** ******** * .

36. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016078 (Actinoalloteichus sp. GBA129-24 plasmid pGBA129-24a, complete sequence) position: , mismatch: 8, identity: 0.758

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
ggcctcggcgaccacggcggcggcggccgtcgg	Protospacer
 ***************** ****.**.  * *

37. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030052 (Bradyrhizobium guangdongense strain CCBAU 51649 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
cagctcggcgaccatggcttcggtggtgatcag	Protospacer
*. ***********.**** ******** * .

38. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030054 (Bradyrhizobium guangzhouense strain CCBAU 51670 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.758

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
cagctcggcgaccatggcttcggtggtgatcag	Protospacer
*. ***********.**** ******** * .

39. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 8, identity: 0.758

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
tgcgtcggcgacgacggctgcggtgacggcgga	Protospacer
.** ******** ************..* .**

40. spacer 4.50|2447958|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_008760 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP04, complete sequence) position: , mismatch: 8, identity: 0.765

atggtccagtgcgaccgctgcgacaccatcacgg	CRISPR spacer
atgggccagtgcgatcgctgcgacgcaagcgcct	Protospacer
**** *********.*********.* * *.*

41. spacer 4.51|2448024|33|NC_011769|CRISPRCasFinder,CRT matches to EU849489 (Stenotrophomonas phage S1, complete genome) position: , mismatch: 8, identity: 0.758

acggcctcatgcaccgaggccgcagtggcgtag	CRISPR spacer
gtagccatgtgcagcgtggccgcagtggcgtag	Protospacer
...*** ..**** ** ****************

42. spacer 4.52|2448089|31|NC_011769|CRT matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 8, identity: 0.742

ccatcatggccgtctgtgcgtggctgatcga	CRISPR spacer
actacgaagccgtcggttcgtggctgatcga	Protospacer
 *  *. .****** ** *************

43. spacer 4.8|2445189|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007795 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p2, complete sequence) position: , mismatch: 9, identity: 0.727

acgccaccggccagcatcggcgcggtcggtgac	CRISPR spacer
acgccaccggccagcatcggatcggggatcagc	Protospacer
********************  ***  . ...*

44. spacer 4.8|2445189|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU140623 (Sinorhizobium sp. M14 plasmid pSinB, complete sequence) position: , mismatch: 9, identity: 0.727

acgccaccggccagcatcggcgcggtcggtgac	CRISPR spacer
cccgagccggccagcaccggcgcggtcgttgca	Protospacer
 *   .**********.*********** **

45. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134461 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence) position: , mismatch: 9, identity: 0.735

--agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
ctggtgggt--gttcgccgccgcgctggcggtgatg	Protospacer
  .*.*. *   ********* ******** *****

46. spacer 4.28|2446508|33|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to KX534337 (Escherichia phage Greed, partial genome) position: , mismatch: 9, identity: 0.727

cgcctcggcgaccacggctgcggtggtgctggt	CRISPR spacer
acctgctgcgcccacggctgctgtggtgctgcg	Protospacer
  *. * *** ********** *********

47. spacer 4.45|2447625|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to MN119376 (Streptomyces phage Geostin, complete genome) position: , mismatch: 9, identity: 0.735

atgccgggcatgggggacacggtggctggccagg	CRISPR spacer
acgaactacatgggtgacacggtgactggccaga	Protospacer
*.*    .****** *********.********.

48. spacer 4.45|2447625|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to MH155868 (Streptomyces phage FlowerPower, complete genome) position: , mismatch: 9, identity: 0.735

atgccgggcatgggggacacggtggctggccagg	CRISPR spacer
acgaactacatgggtgacacggtgactggccaga	Protospacer
*.*    .****** *********.********.

49. spacer 4.45|2447625|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to MN284894 (Streptomyces phage Fabian, complete genome) position: , mismatch: 9, identity: 0.735

atgccgggcatgggggacacggtggctggccagg	CRISPR spacer
acgaactacatgggtgacacggtgactggccaga	Protospacer
*.*    .****** *********.********.

50. spacer 4.48|2447825|35|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.743

cctgcccgaggcgcagacgcccgtggtcatctcgc	CRISPR spacer
cttgcccgaggcgcagacgcacgtcgtcaggcatg	Protospacer
*.****************** *** ****  .

51. spacer 4.6|2445057|35|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to AB910392 (Pseudomonas phage KPP23 DNA, complete sequence) position: , mismatch: 10, identity: 0.714

gcctctgccgtgcgccagtacgccgccgacaacaa-	CRISPR spacer
aaagcttccgggcgccagtacgccgccga-agcgct	Protospacer
.   ** *** ****************** *.*.

52. spacer 4.6|2445057|35|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to MK443266 (UNVERIFIED: Pseudomonas phage RSP, complete genome) position: , mismatch: 10, identity: 0.714

gcctctgccgtgcgccagtacgccgccgacaacaa-	CRISPR spacer
aaagcttccgggcgccagtacgccgccga-agcgct	Protospacer
.   ** *** ****************** *.*.

53. spacer 4.6|2445057|35|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to MK803322 (Pseudomonas phage RSP, complete genome) position: , mismatch: 10, identity: 0.714

gcctctgccgtgcgccagtacgccgccgacaacaa-	CRISPR spacer
aaagcttccgggcgccagtacgccgccga-agcgct	Protospacer
.   ** *** ****************** *.*.

54. spacer 4.17|2445782|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 10, identity: 0.706

tccatgaacccgtccatcgcggtcatcgtccctc	CRISPR spacer
tcgtcatgcccgttcatcgccgtcatcgtcccca	Protospacer
**  .. .*****.****** ***********.

55. spacer 4.45|2447625|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.706

atgccgggcatgggggacacggtggctggccagg	CRISPR spacer
atgccgggcatgatggacacggtgctgaatctcg	Protospacer
************. ********** . ...*  *

56. spacer 4.45|2447625|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 10, identity: 0.706

atgccgggcatgggggacacggtggctggccagg	CRISPR spacer
atgccgggcatgatggacacggtgctgaatctcg	Protospacer
************. ********** . ...*  *

57. spacer 4.45|2447625|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 10, identity: 0.706

atgccgggcatgggggacacggtggctggccagg	CRISPR spacer
atgccgggcatgatggacacggtgctgaatctcg	Protospacer
************. ********** . ...*  *

58. spacer 4.45|2447625|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 10, identity: 0.706

atgccgggcatgggggacacggtggctggccagg	CRISPR spacer
atgccgggcatgatggacacggtgctgaatctcg	Protospacer
************. ********** . ...*  *

59. spacer 4.45|2447625|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.706

atgccgggcatgggggacacggtggctggccagg	CRISPR spacer
atgccgggcatgatggacacggtgctgaatctcg	Protospacer
************. ********** . ...*  *

60. spacer 4.45|2447625|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 10, identity: 0.706

atgccgggcatgggggacacggtggctggccagg	CRISPR spacer
atgccgggcatgatggacacggtgctgaatctcg	Protospacer
************. ********** . ...*  *

61. spacer 4.1|2444725|35|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to KX241618 (Xanthomonas phage Xoo-sp2, complete genome) position: , mismatch: 11, identity: 0.686

gtactgtaccccggcgagcgcgaggtgctggaatc	CRISPR spacer
tcgcagtaccagggcgagcgcgaggtgctgttcat	Protospacer
 ..* *****  ******************    .

62. spacer 4.5|2444990|35|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_049384 (Enterobacter phage EspM4VN DNA, complete genome) position: , mismatch: 11, identity: 0.686

atcctcggtcgccttgacgatgtagaccttgttgc	CRISPR spacer
caactcggtcgccttgccgaggtagaccagaggtc	Protospacer
   ************* *** *******  .   *

63. spacer 4.5|2444990|35|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to LC373201 (Enterobacter phage phiEM4 DNA, complete genome) position: , mismatch: 11, identity: 0.686

atcctcggtcgccttgacgatgtagaccttgttgc	CRISPR spacer
caactcggtcgccttgccgaggtagaccagaggtc	Protospacer
   ************* *** *******  .   *

64. spacer 4.21|2446049|34|NC_011769|PILER-CR,CRISPRCasFinder,CRT matches to NC_008741 (Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence) position: , mismatch: 11, identity: 0.676

agcgacttccttcgccgcctcgctggcgttgatg	CRISPR spacer
cagtccgcccttcgccgccttgctggccttgagc	Protospacer
 .   * .************.****** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

842630 : 900882

Pseudomonas_phage(20.69%)

plate,protease,terminase,transposase,head,tail,integrase

attL 848813:848830|attR 905098:905115

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155860486.1\|842630_843365_-\|protease	CAAX prenyl protease-related protein	NA	NA	NA	NA
WP_012611845.1\|843361_844423_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012611846.1\|844419_845118_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.6e-41	40.2
WP_012611847.1\|845117_846248_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_012611848.1\|846292_847762_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_012611849.1\|848470_849817_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
848813:848830	attL	NA	NA	NA	NA
WP_012611850.1\|849816_851454_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	5.9e-16	26.6
WP_012611851.1\|851699_852092_+	universal stress protein	NA	NA	NA	NA
WP_012611852.1\|852124_853063_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_012611853.1\|853065_853830_+	hypothetical protein	NA	NA	NA	NA
WP_155860487.1\|854053_856669_+	pyruvate, water dikinase	NA	NA	NA	NA
WP_012611855.1\|856637_857039_+	response regulator	NA	NA	NA	NA
WP_012611856.1\|857048_859649_+	PEP-utilizing protein mobile subunit	NA	NA	NA	NA
WP_155860488.1\|859054_862423_+	pyruvate, phosphate dikinase	NA	NA	NA	NA
WP_012611858.1\|862569_863235_-	serine/threonine protein phosphatase	A0A1V0EF12	Caulobacter_phage	2.3e-19	33.3
WP_012611859.1\|864143_864860_-	helix-turn-helix transcriptional regulator	R9U2Q5	Rhizobium_phage	2.7e-21	29.1
WP_012611861.1\|865581_865824_+	hypothetical protein	NA	NA	NA	NA
WP_012611862.1\|865832_868031_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q38013	Pseudomonas_phage	4.3e-94	34.5
WP_012611863.1\|868039_868822_+	ATP-binding protein	NA	NA	NA	NA
WP_012611864.1\|868822_869416_+	hypothetical protein	NA	NA	NA	NA
WP_012611865.1\|869405_869735_+	LacI family transcriptional regulator	G8GWC3	Rhodobacter_phage	1.2e-13	41.0
WP_012611866.1\|869736_870231_+	hypothetical protein	NA	NA	NA	NA
WP_012611867.1\|870321_870774_+	hypothetical protein	NA	NA	NA	NA
WP_012611868.1\|870776_871001_+	hypothetical protein	NA	NA	NA	NA
WP_012611869.1\|870987_871428_+	regulatory protein GemA	A0A0M5MRZ7	Ralstonia_phage	2.0e-27	50.8
WP_155860602.1\|871448_871895_+	DNA transposition protein	B7SDY2	Pseudomonas_virus	6.5e-18	36.0
WP_155860489.1\|872094_872535_+	hypothetical protein	NA	NA	NA	NA
WP_049761692.1\|872879_873209_+	hypothetical protein	Q6QIC8	Burkholderia_phage	5.7e-11	41.1
WP_012611872.1\|873211_874000_+	transglycosylase SLT domain-containing protein	A0A2H4J7R8	uncultured_Caudovirales_phage	5.1e-58	56.2
WP_012611873.1\|873999_874695_+	hypothetical protein	NA	NA	NA	NA
WP_012611874.1\|874691_874958_+	hypothetical protein	NA	NA	NA	NA
WP_012611875.1\|874971_875187_+	hypothetical protein	NA	NA	NA	NA
WP_012611876.1\|875188_875695_+	DUF1804 family protein	I6PBD1	Pseudomonas_phage	6.2e-41	52.4
WP_081437369.1\|875706_877368_+\|terminase	phage terminase large subunit	H6V8N6	Pseudomonas_phage	5.5e-187	59.6
WP_012611878.1\|877342_879001_+	DUF935 domain-containing protein	A0A125RNC0	Pseudomonas_phage	1.0e-108	44.6
WP_012611879.1\|879275_880529_+\|head	phage head morphogenesis protein	Q6QIB9	Burkholderia_phage	7.6e-72	52.1
WP_012611880.1\|880671_881154_+	phage virion morphogenesis protein	M4ST99	Rhodobacter_phage	1.6e-09	31.7
WP_012611881.1\|881295_881886_+	hypothetical protein	K7PLT9	Enterobacteria_phage	2.8e-08	37.5
WP_012611882.1\|881882_882815_+	hypothetical protein	NA	NA	NA	NA
WP_012611883.1\|882851_884036_+	peptidase	A0A0M5N0Q6	Ralstonia_phage	2.3e-46	39.4
WP_012611884.1\|884039_884969_+\|head	head protein	A0A1C6ZDN1	Pseudomonas_phage	1.4e-99	57.5
WP_155860603.1\|884992_885397_+	hypothetical protein	NA	NA	NA	NA
WP_012611886.1\|885397_885817_+	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_012611887.1\|885813_886434_+	DUF1834 family protein	NA	NA	NA	NA
WP_012611888.1\|886435_886639_+	DUF2635 domain-containing protein	A0A0M3LQM9	Mannheimia_phage	1.4e-07	58.0
WP_012611889.1\|886625_888047_+\|tail	tail sheath protein	B7SDP8	Haemophilus_phage	1.4e-98	46.3
WP_012611890.1\|888234_888609_+	hypothetical protein	A0A2H4J9F8	uncultured_Caudovirales_phage	4.8e-22	42.0
WP_012611891.1\|888612_888942_+	hypothetical protein	NA	NA	NA	NA
WP_155860490.1\|888962_889100_+	hypothetical protein	NA	NA	NA	NA
WP_012611892.1\|889103_891044_+\|tail	phage tail tape measure protein	B5TAA4	Burkholderia_phage	3.7e-73	45.4
WP_012611893.1\|891064_892405_+	DNA circulation family protein	A0A2H4JGT4	uncultured_Caudovirales_phage	3.7e-32	27.3
WP_012611894.1\|892394_893495_+\|tail	tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	1.9e-79	45.1
WP_041727467.1\|893649_894279_+\|plate	phage baseplate assembly protein	A0A0M3LPA3	Mannheimia_phage	5.6e-31	39.9
WP_012611896.1\|894256_895699_-	hypothetical protein	NA	NA	NA	NA
WP_012611897.1\|895782_896154_+	hypothetical protein	A0A2H4JDR8	uncultured_Caudovirales_phage	3.4e-28	56.6
WP_012611898.1\|896163_897225_+\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	3.5e-62	44.0
WP_012611899.1\|897221_897791_+	DUF2313 domain-containing protein	Q8W614	Enterobacteria_phage	4.3e-14	29.9
WP_012611902.1\|899978_900185_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_049761693.1\|900222_900882_+	hypothetical protein	A0A0A0YWF4	Pseudomonas_phage	8.0e-65	59.3
905098:905115	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1560628 : 1593587

uncultured_Caudovirales_phage(15.38%)

plate,transposase,head,tail,holin,integrase

attL 1555662:1555680|attR 1576281:1576299

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1555662:1555680	attL	NA	NA	NA	NA
WP_012612401.1\|1560628_1562815_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A1B0T6H2	Thiobacimonas_phage	7.6e-27	26.6
WP_012612402.1\|1562811_1563513_+	ATP-binding protein	A0A2H4J809	uncultured_Caudovirales_phage	9.6e-08	26.3
WP_012612403.1\|1563515_1564160_+	hypothetical protein	NA	NA	NA	NA
WP_007523608.1\|1564162_1564372_+	hypothetical protein	NA	NA	NA	NA
WP_012612404.1\|1564371_1564881_+	host-nuclease inhibitor protein Gam	A0A0N7ACD4	Bacillus_phage	3.1e-08	31.5
WP_012612405.1\|1564897_1565188_+	hypothetical protein	NA	NA	NA	NA
WP_012612406.1\|1565279_1565729_+	hypothetical protein	NA	NA	NA	NA
WP_049761561.1\|1565713_1566229_+	regulatory protein GemA	NA	NA	NA	NA
WP_012612408.1\|1566225_1566591_+	hypothetical protein	NA	NA	NA	NA
WP_012612409.1\|1566571_1567039_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012612410.1\|1567098_1568001_+	hypothetical protein	NA	NA	NA	NA
WP_012612411.1\|1568070_1568472_+\|holin	holin	A4JWP3	Burkholderia_virus	2.9e-09	38.4
WP_012612412.1\|1568471_1569143_+	transglycosylase SLT domain-containing protein	A0A2H4J9H7	uncultured_Caudovirales_phage	2.4e-56	56.5
WP_012612413.1\|1569142_1569562_+	hypothetical protein	NA	NA	NA	NA
WP_012612414.1\|1569515_1569797_+	hypothetical protein	NA	NA	NA	NA
WP_007523633.1\|1569793_1570288_+	hypothetical protein	NA	NA	NA	NA
WP_007523635.1\|1570284_1570527_+	hypothetical protein	NA	NA	NA	NA
WP_012612415.1\|1570551_1571151_+	hypothetical protein	NA	NA	NA	NA
WP_012612416.1\|1571280_1572762_+	hypothetical protein	A4JWJ4	Burkholderia_virus	8.0e-129	51.8
WP_012612417.1\|1572738_1573671_-	hypothetical protein	NA	NA	NA	NA
WP_155860510.1\|1574020_1574443_-	hypothetical protein	NA	NA	NA	NA
WP_012612418.1\|1574615_1576190_+	DUF935 family protein	Q5ZQY4	Pseudomonas_phage	6.7e-25	28.8
WP_012612419.1\|1576191_1577493_+\|head	phage head morphogenesis protein	A0A2K9VGX3	Faecalibacterium_phage	2.9e-34	42.1
1576281:1576299	attR	NA	NA	NA	NA
WP_012612420.1\|1577633_1578614_+	hypothetical protein	Q6QIB7	Burkholderia_phage	1.1e-20	40.3
WP_012612421.1\|1578632_1578980_+	hypothetical protein	NA	NA	NA	NA
WP_012612422.1\|1578989_1579994_+	hypothetical protein	NA	NA	NA	NA
WP_012612423.1\|1580198_1580630_+	DUF1320 domain-containing protein	NA	NA	NA	NA
WP_012612424.1\|1580772_1581219_+	phage virion morphogenesis protein	R9U1C4	Rhizobium_phage	6.3e-13	35.6
WP_012612425.1\|1581215_1581752_+	hypothetical protein	NA	NA	NA	NA
WP_012612426.1\|1581753_1582179_+	hypothetical protein	NA	NA	NA	NA
WP_012612427.1\|1582194_1583880_+	DUF2586 family protein	NA	NA	NA	NA
WP_012612428.1\|1583889_1584360_+	hypothetical protein	NA	NA	NA	NA
WP_155860511.1\|1584524_1585121_+	hypothetical protein	NA	NA	NA	NA
WP_012612429.1\|1585243_1586284_+	hypothetical protein	NA	NA	NA	NA
WP_012612430.1\|1586462_1586819_+	hypothetical protein	NA	NA	NA	NA
WP_012612431.1\|1587061_1589407_+\|tail	phage tail tape measure protein	A2I2Y1	Vibrio_virus	2.6e-73	51.6
WP_012612432.1\|1589403_1589949_+	hypothetical protein	A0A1B1IUE1	uncultured_Mediterranean_phage	1.7e-07	28.8
WP_012612433.1\|1589948_1590749_+	hypothetical protein	NA	NA	NA	NA
WP_012612434.1\|1590735_1591461_+	hypothetical protein	NA	NA	NA	NA
WP_155860512.1\|1591463_1591967_-	hypothetical protein	NA	NA	NA	NA
WP_012612435.1\|1592002_1592437_+\|plate	baseplate assembly protein	NA	NA	NA	NA
WP_012612436.1\|1592414_1593587_+\|plate	baseplate J/gp47 family protein	A0A2K9VGW9	Faecalibacterium_phage	1.8e-22	34.2

DBSCAN-SWA_3

2018378 : 2039449

Ralstonia_phage(18.18%)

portal,protease,capsid,terminase,head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041728442.1\|2018378_2021177_-\|tail	tail protein	NA	NA	NA	NA
WP_012612765.1\|2021173_2021533_-	hypothetical protein	NA	NA	NA	NA
WP_049761568.1\|2021612_2022554_-	hypothetical protein	NA	NA	NA	NA
WP_012612767.1\|2022520_2022874_-	hypothetical protein	NA	NA	NA	NA
WP_012612768.1\|2022876_2025693_-	tape measure protein	A0A0M5MTI3	Ralstonia_phage	4.7e-29	34.3
WP_012612769.1\|2025798_2026587_+	hypothetical protein	NA	NA	NA	NA
WP_012612770.1\|2026838_2027723_+	Bro-N domain-containing protein	A0A077K9T3	Ralstonia_phage	2.6e-26	53.2
WP_081437325.1\|2027876_2028872_+	hypothetical protein	Q8HA04	Enterobacteria_phage	2.0e-51	39.8
WP_155860527.1\|2028963_2029104_-	hypothetical protein	NA	NA	NA	NA
WP_012612772.1\|2029151_2029499_-	hypothetical protein	G9FHI3	Rhodococcus_phage	1.4e-12	38.1
WP_012612773.1\|2029509_2029929_-	hypothetical protein	NA	NA	NA	NA
WP_155860528.1\|2029944_2030322_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_012612775.1\|2030299_2030698_-	HK97 gp10 family phage protein	NA	NA	NA	NA
WP_012612776.1\|2030697_2031012_-\|head	phage head closure protein	A0A1J0GUY4	Halomonas_phage	1.1e-16	51.7
WP_012612777.1\|2031014_2031599_-	hypothetical protein	NA	NA	NA	NA
WP_012612778.1\|2031595_2031775_-	hypothetical protein	NA	NA	NA	NA
WP_012612779.1\|2031820_2033041_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	6.8e-110	50.6
WP_012612780.1\|2033053_2033755_-\|head,protease	HK97 family phage prohead protease	B0VK32	Azospirillum_phage	6.0e-34	44.4
WP_155860654.1\|2033741_2034950_-\|portal	phage portal protein	B0VK31	Azospirillum_phage	3.6e-87	44.9
WP_155860655.1\|2034967_2036608_-\|terminase	terminase large subunit	A0A0U4B0C7	Pseudomonas_phage	2.2e-132	45.8
WP_155860656.1\|2036657_2036990_-\|terminase	terminase	NA	NA	NA	NA
WP_012612784.1\|2037203_2037599_-	HNH endonuclease	Q8W6N0	Burkholderia_virus	1.0e-22	48.3
WP_116306268.1\|2037595_2038027_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_116306270.1\|2038124_2038457_-	hypothetical protein	NA	NA	NA	NA
WP_012612787.1\|2038655_2039039_-	hypothetical protein	NA	NA	NA	NA
WP_012612788.1\|2039041_2039449_-	hypothetical protein	A0A2I7RXE2	Vibrio_phage	1.4e-35	55.8

DBSCAN-SWA_4

2535428 : 2544430

Prochlorococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012613160.1\|2535428_2536454_-	ADP-heptose synthase	A0A0K0KW05	Prochlorococcus_phage	2.2e-05	23.3
WP_012613161.1\|2536516_2537449_-	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	1.8e-17	36.6
WP_012613162.1\|2537540_2537951_+	hypothetical protein	NA	NA	NA	NA
WP_012613163.1\|2537994_2538783_-	ParA family protein	Q8JL10	Natrialba_phage	2.0e-22	31.0
WP_155860542.1\|2538989_2539283_+	hypothetical protein	NA	NA	NA	NA
WP_012613164.1\|2539422_2540430_-	NAD-dependent epimerase	K7QJG5	Escherichia_phage	6.6e-18	25.8
WP_012613165.1\|2540818_2541568_-	slipin family protein	J3IZE5	Acanthamoeba_polyphaga_lentillevirus	4.2e-25	30.7
WP_012613166.1\|2542148_2543201_-	hypothetical protein	NA	NA	NA	NA
WP_012613167.1\|2543182_2544430_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9J5A8	Fowlpox_virus	3.0e-12	26.7

DBSCAN-SWA_5

3405743 : 3416110

Escherichia_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015946319.1\|3405743_3406334_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	8.9e-39	45.6
WP_041727631.1\|3406577_3408245_+	response regulator	A0A1V0SGX0	Hokovirus	3.5e-56	36.0
WP_015946321.1\|3409002_3410208_+	GDP-mannose 4,6-dehydratase	M1HGM9	Acanthocystis_turfacea_Chlorella_virus	2.2e-132	59.7
WP_041727633.1\|3410225_3411170_+	GDP-L-fucose synthase	A7IWS0	Paramecium_bursaria_Chlorella_virus	4.5e-101	57.1
WP_015946323.1\|3411352_3412444_+	glycosyltransferase	A0A1V0SAH6	Catovirus	8.2e-14	35.8
WP_015946324.1\|3412437_3413529_+	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	2.1e-09	23.8
WP_015946325.1\|3413531_3415271_+	FkbM family methyltransferase	F2Y1T8	Organic_Lake_phycodnavirus	1.8e-07	23.1
WP_015946326.1\|3415267_3416110_+	alpha-1,2-fucosyltransferase	E3SJA0	Synechococcus_phage	7.2e-26	33.9

DBSCAN-SWA_6

3901244 : 3912561

Staphylococcus_phage(37.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015946707.1\|3901244_3903749_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	1.3e-200	44.6
WP_015946708.1\|3904101_3904599_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_015946709.1\|3904603_3905074_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	7.8e-30	44.3
WP_015946710.1\|3905174_3906404_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.4e-75	42.3
WP_015946711.1\|3906493_3907186_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	1.5e-16	33.7
WP_015946712.1\|3907228_3908488_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2I2L4R9	Orpheovirus	1.1e-30	28.5
WP_155860723.1\|3908492_3909002_-	cytidine deaminase	S5YN57	Mycobacterium_phage	5.0e-22	40.5
WP_015946714.1\|3909345_3910584_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	6.5e-100	53.9
WP_015946715.1\|3910903_3912151_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_015946716.1\|3912330_3912561_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	3.5e-07	42.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011769

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection