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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NC_011661 Dictyoglomus turgidum DSM 6724, complete sequence 3 crisprs csa3,csx1,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx3,cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6,cas3HD 0 6 3 0

Results visualization

1. NC_011661
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011661_1 470870-474424 Orphan NA
53 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011661_2 615153-617311 TypeIII NA
32 spacers
csx3,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,csx1,cas2,cas1,cas4,cas3,cas5,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NC_011661_3 1411186-1411308 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NC_011661_1 1.44|473763|37|NC_011661|PILER-CR,CRISPRCasFinder,CRT 473763-473799 37 HQ634190 Cyanophage Syn2 genomic sequence 129466-129502 8 0.784
NC_011661_1 1.44|473763|37|NC_011661|PILER-CR,CRISPRCasFinder,CRT 473763-473799 37 NC_015286 Synechococcus phage Syn19, complete genome 20123-20159 8 0.784
NC_011661_1 1.48|474031|36|NC_011661|PILER-CR,CRISPRCasFinder,CRT 474031-474066 36 NZ_CP051720 Escherichia coli strain SCU-116 plasmid pSCU-116-1, complete sequence 2423-2458 8 0.778
NC_011661_1 1.48|474031|36|NC_011661|PILER-CR,CRISPRCasFinder,CRT 474031-474066 36 CP054380 Escherichia coli strain SCU-175 plasmid pSCU-175-1, complete sequence 4558-4593 8 0.778
NC_011661_1 1.48|474031|36|NC_011661|PILER-CR,CRISPRCasFinder,CRT 474031-474066 36 NZ_CP022673 Shigella sonnei strain 866 plasmid p866, complete sequence 106544-106579 8 0.778
NC_011661_1 1.48|474031|36|NC_011661|PILER-CR,CRISPRCasFinder,CRT 474031-474066 36 MN698248 Pelagibacter phage HTVC202P, complete genome 17431-17466 9 0.75
NC_011661_1 1.35|473162|36|NC_011661|PILER-CR,CRISPRCasFinder,CRT 473162-473197 36 NZ_CP044979 Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence 497280-497315 10 0.722
NC_011661_1 1.53|474363|32|NC_011661|CRISPRCasFinder,CRT 474363-474394 32 NZ_CP047143 Lactobacillus sp. C25 plasmid unnamed, complete sequence 97595-97626 10 0.688
NC_011661_2 2.32|617250|32|NC_011661|CRISPRCasFinder,CRT 617250-617281 32 NZ_CP047143 Lactobacillus sp. C25 plasmid unnamed, complete sequence 97595-97626 10 0.688
NC_011661_1 1.40|473496|38|NC_011661|PILER-CR,CRISPRCasFinder,CRT 473496-473533 38 NZ_CP016748 Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1B, complete sequence 12386-12423 11 0.711
NC_011661_1 1.40|473496|38|NC_011661|PILER-CR,CRISPRCasFinder,CRT 473496-473533 38 NZ_CP016745 Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence 91714-91751 11 0.711

1. spacer 1.44|473763|37|NC_011661|PILER-CR,CRISPRCasFinder,CRT matches to HQ634190 (Cyanophage Syn2 genomic sequence) position: , mismatch: 8, identity: 0.784

tcaatacc-cactgccccaatagtttgaaaacaggaaa	CRISPR spacer
-cagcaccaaactgacccaacagtttgaaaacaggagt	Protospacer
 **..***  **** *****.***************. 

2. spacer 1.44|473763|37|NC_011661|PILER-CR,CRISPRCasFinder,CRT matches to NC_015286 (Synechococcus phage Syn19, complete genome) position: , mismatch: 8, identity: 0.784

tcaatacc-cactgccccaatagtttgaaaacaggaaa	CRISPR spacer
-cagcaccaaactgacccaacagtttgaaaacaggagt	Protospacer
 **..***  **** *****.***************. 

3. spacer 1.48|474031|36|NC_011661|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051720 (Escherichia coli strain SCU-116 plasmid pSCU-116-1, complete sequence) position: , mismatch: 8, identity: 0.778

atgttatataaggagataaaatgaacaacgatgaat	CRISPR spacer
ataatcttgtaggagataaaatgaattacgatgaat	Protospacer
**. * *   ***************. *********

4. spacer 1.48|474031|36|NC_011661|PILER-CR,CRISPRCasFinder,CRT matches to CP054380 (Escherichia coli strain SCU-175 plasmid pSCU-175-1, complete sequence) position: , mismatch: 8, identity: 0.778

atgttatataaggagataaaatgaacaacgatgaat	CRISPR spacer
ataatcttgtaggagataaaatgaattacgatgaat	Protospacer
**. * *   ***************. *********

5. spacer 1.48|474031|36|NC_011661|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022673 (Shigella sonnei strain 866 plasmid p866, complete sequence) position: , mismatch: 8, identity: 0.778

atgttatataaggagataaaatgaacaacgatgaat	CRISPR spacer
ataatcttgtaggagataaaatgaattacgatgaat	Protospacer
**. * *   ***************. *********

6. spacer 1.48|474031|36|NC_011661|PILER-CR,CRISPRCasFinder,CRT matches to MN698248 (Pelagibacter phage HTVC202P, complete genome) position: , mismatch: 9, identity: 0.75

---atgttatataaggagataaaatgaacaacgatgaat	CRISPR spacer
ggaacaccat---aggagataaaatgaaaaacgataaat	Protospacer
   *....**   *************** ******.***

7. spacer 1.35|473162|36|NC_011661|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 10, identity: 0.722

ttaagaaattcatccacatttttataatgttggttg	CRISPR spacer
tttgtcaattcattcacatttttataattttgtaga	Protospacer
** .  *******.************** ***   .

8. spacer 1.53|474363|32|NC_011661|CRISPRCasFinder,CRT matches to NZ_CP047143 (Lactobacillus sp. C25 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ccgtaaaaagggcaaaaaagctaccgcttaaa	CRISPR spacer
aagcttaaaggacaaaaaagctacagcttggg	Protospacer
  *.  *****.************ ****...

9. spacer 2.32|617250|32|NC_011661|CRISPRCasFinder,CRT matches to NZ_CP047143 (Lactobacillus sp. C25 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ccgtaaaaagggcaaaaaagctaccgcttaaa	CRISPR spacer
aagcttaaaggacaaaaaagctacagcttggg	Protospacer
  *.  *****.************ ****...

10. spacer 1.40|473496|38|NC_011661|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016748 (Lactococcus lactis subsp. cremoris strain JM1 plasmid pJM1B, complete sequence) position: , mismatch: 11, identity: 0.711

tagccaaaatcctcataaaaatctgggaaatcttcttt	CRISPR spacer
taaagaaaatcctcatgaaaatctggggaatcacaaga	Protospacer
**.  ***********.**********.**** .    

11. spacer 1.40|473496|38|NC_011661|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016745 (Lactococcus lactis subsp. cremoris strain JM2 plasmid pMPJM2, complete sequence) position: , mismatch: 11, identity: 0.711

tagccaaaatcctcataaaaatctgggaaatcttcttt	CRISPR spacer
taaagaaaatcctcatgaaaatctggggaatcacaaga	Protospacer
**.  ***********.**********.**** .    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 726866 : 732651 6 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 821325 : 829101 11 Bacillus_phage(12.5%) NA NA
DBSCAN-SWA_3 1426825 : 1439497 12 Catovirus(12.5%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage