CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NC_011663	Shewanella baltica OS223, complete sequence	2 crisprs	RT,cas3,DEDDh,DinG,WYL,csa3,cas7f,cas5f	10
NC_011665	Shewanella baltica OS223 plasmid pS22303, complete sequence	0 crisprs	NA	0
NC_011664	Shewanella baltica OS223 plasmid pS22301, complete sequence	0 crisprs	NA	1
NC_011668	Shewanella baltica OS223 plasmid pS22302, complete sequence	0 crisprs	NA	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011663_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011663_1

2084232-2084506

Orphan

Consensus_repeat	Method
AAAATGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGC	PILER-CR

2 spacers

The CRISPR arrays of NC_011663_1

>merge|NC_011663|1|2084232-2084506|PILER-CR
AGAATTGCTGCCGAAGCCGGATTTGAACCGACGACCTTCGCCTGTTGTTTATAATGAGTTGAGCCCGATGAGCTGTTTCTCGTTATAAACACATATAGAAAGTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCATGCTGCTCCATCCCGCGTCCTATATCTATCTGTTTTACTTTACTATTTTGCTTTAAATTGGTTGCGGGAGCAGGATTTGAACCTACGACCTTCGGGTTATGAGCCCGACGAGC

>NC_011663|1|1|2084232-2084506|PILER-CR
AGAATTGCTGCCGAAGCCGGATTTGAACCGACGACCTTCGCCTGTTGTTTATAATGAGT	TGAGCCCGATGAGCTGTTTCTCGTTATAAACACATATAGAAAGTGGTTGCGGGAGCC
GGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCATGCTGCTCCATCC	CGCGTCCTATATCTATCTGTTTTACTTTACTATTTTGCTTTAAATTGGTTGCGGGAGCA
GGATTTGAACCTACGACCTTCGGGTTATGAGCCCGACGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011663.1\|WP_006082074.1\|2091131_2091308_+\|ribosome-modulation-factor	unknown	unknown	gnl\|CDD\|184747
NC_011663.1\|WP_006082081.1\|2081234_2081834_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NC_011663.1\|WP_012587430.1\|2092021_2093755_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223994
NC_011663.1\|WP_012587423.1\|2074045_2074915_+\|DUF692-domain-containing-protein	unknown	unknown	gnl\|CDD\|235447
NC_011663.1\|WP_006082076.1\|2087163_2089089_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236861
NC_011663.1\|WP_012587425.1\|2076015_2076384_+\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NC_011663.1\|WP_006082078.1\|2084785_2086915_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	unknown	unknown	gnl\|CDD\|236981
NC_011663.1\|WP_006082070.1\|2097777_2098422_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NC_011663.1\|WP_006082089.1\|2073500_2073932_+\|hypothetical-protein	unknown	unknown	unknown
NC_011663.1\|WP_041408447.1\|2077240_2080669_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|237863
NC_011663.1\|WP_006082073.1\|2091431_2091947_-\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	unknown	unknown	gnl\|CDD\|179953
NC_011663.1\|WP_086010671.1\|2076651_2077203_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NC_011663.1\|WP_012587427.1\|2082294_2082786_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182263
NC_011663.1\|WP_012587431.1\|2094439_2096437_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NC_011663.1\|WP_041408449.1\|2098525_2100355_+\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NC_011663.1\|WP_012587428.1\|2083044_2083458_+\|hypothetical-protein	unknown	unknown	unknown
NC_011663.1\|WP_012587429.1\|2086907_2087162_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|368604
NC_011663.1\|WP_012587424.1\|2074914_2075661_+\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225760
NC_011663.1\|WP_006082082.1\|2080892_2081222_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NC_011663.1\|WP_006086198.1\|2089117_2090944_+\|DUF3466-family-protein	unknown	unknown	gnl\|CDD\|378770

Protein	Function_ID	Function_description	E-value
NC_011663.1\|WP_006082074.1\|2091131_2091308_+\|ribosome-modulation-factor	gnl\|CDD\|184747	PRK14563, PRK14563, ribosome modulation factor; Provisional.	3.66866e-29
NC_011663.1\|WP_006082081.1\|2081234_2081834_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	3.97316e-110
NC_011663.1\|WP_012587430.1\|2092021_2093755_-\|AAA-family-ATPase	gnl\|CDD\|223994	COG1067, LonB, Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones].	1.94543e-108
NC_011663.1\|WP_012587423.1\|2074045_2074915_+\|DUF692-domain-containing-protein	gnl\|CDD\|235447	PRK05409, PRK05409, hypothetical protein; Provisional.	2.26764e-157
NC_011663.1\|WP_006082076.1\|2087163_2089089_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236861	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.	0
NC_011663.1\|WP_012587425.1\|2076015_2076384_+\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	9.12741e-39
NC_011663.1\|WP_006082078.1\|2084785_2086915_+\|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL	gnl\|CDD\|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	0
NC_011663.1\|WP_006082070.1\|2097777_2098422_+\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	2.88417e-163
NC_011663.1\|WP_041408447.1\|2077240_2080669_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|237863	PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional.	0
NC_011663.1\|WP_086010671.1\|2076651_2077203_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	7.46751e-101
NC_011663.1\|WP_012587427.1\|2082294_2082786_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182263	PRK10140, PRK10140, N-acetyltransferase.	3.6187e-57
NC_011663.1\|WP_012587431.1\|2094439_2096437_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	3.07799e-61
NC_011663.1\|WP_041408449.1\|2098525_2100355_+\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NC_011663.1\|WP_012587424.1\|2074914_2075661_+\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225760	COG3219, COG3219, Uncharacterized protein conserved in bacteria [Function unknown].	1.23988e-37
NC_011663.1\|WP_012587429.1\|2086907_2087162_+\|glutaredoxin-family-protein	gnl\|CDD\|368604	pfam05768, DUF836, Glutaredoxin-like domain (DUF836). These proteins are related to the pfam00462 family.	9.3348e-10
NC_011663.1\|WP_006082073.1\|2091431_2091947_-\|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	1.63812e-127
NC_011663.1\|WP_006082082.1\|2080892_2081222_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	1.45712e-39
NC_011663.1\|WP_006086198.1\|2089117_2090944_+\|DUF3466-family-protein	gnl\|CDD\|378770	pfam11949, DUF3466, Protein of unknown function (DUF3466). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 564 to 612 amino acids in length.	0

>NC_011663.1|WP_012587428.1|2083044_2083458_+|hypothetical-protein
MGLILLPLLILWLGVGIYAISIGYQVLAGTSQLSYTLSVCSIAIVALLLYLYFGFAQFKENKALWAFEIPMFFAANKLAFGVMILGLLLHWFGQGVLTSAYLKPLPFIMIFTVSFGAMAGVILSDTFMAKFEIQKTH
>NC_011663.1|WP_012587427.1|2082294_2082786_+|GNAT-family-N-acetyltransferase
MEKITIRHAEKRDAAAIQAVYACPNAYTGTLQLPWPSTDKWESRLAATSNHISRYVAEIEGEIIGELGFEVYEQPRRRHVASFGMGVKDSYQGRGVGSALINVMLELTDKWMNIKRIELTVYTDNHAAIGLYKKFGFVIEGESKDFAFRNGEFVSVYHMARIK
>NC_011663.1|WP_006082081.1|2081234_2081834_+|recombination-protein-RecR
MKFSPLLDELIQSLRCLPGVGPKSAQRMAFQLLERDRKAGLKLASALSSAMSDVGHCQSCRTYTEETLCPICASHKRGTSSTICVVETPADVLAIEAGGHFTGRYFVLLGHLSPLDGVGPEELGLALLERHLASGDVAELILATNPTVEGEATAHFIADMARRHKVMISRIAHGVPVGGELEYVDSTTLALSFNGRLPL
>NC_011663.1|WP_006082082.1|2080892_2081222_+|YbaB/EbfC-family-nucleoid-associated-protein
MFGKGGMGNLMKQAQMMQEKMAKVQEEIARMEMVGESGAGLVKVTMTGAHTVRKVEIDPSLMEDDKEMLEDLIAAACNDAARRIEENQKTKMAEVTGGMQLPPGMKMPF
>NC_011663.1|WP_041408447.1|2077240_2080669_+|DNA-polymerase-III-subunit-gamma/tau
MSNHDMLSFKVLGAHAPALVSHTLGSSMSYQVLARKWRPATFDQMVGQSHVLHALTNALSQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQGEIGTQLNHILTQEQFPFDAEALKLLAKAANGSMRDALSLTDQAIAFGGGNVMLTQVQTMLGSIDEQHVVALLKALTDADIGVLMHTCAQVLAYGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSAQIRAFAEQLTPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVPEKPVKRWQPDAVAEIRLPEGQTPVAVTAAVQAPHVNEQQFAETHTAEPHTAEPHIAETAPAEKKTALIEQTSANQQVETAQAAAVTTAEASIEPADTVEQALDAELEADAALIAEQAVILSQAQSQGFNADSLNAYTVNAEVEPQTQTVSTAQAPSIHISEPVADIEASVASLDAHNSEVPELIGATAESSIVNPAMAETLVDSTPAVNNSAAENTLDNNPTANNTLEPKGLDEHSPYGTEAEHSYPAMGAYAQESAPLDSYQDAYVEFSSGSYNDDDFHHSFDSHAVPDDVQHSANVQHSDSVQHSADVQSAASIQSALGMQGSVDSQSAAMAQVSPQTLTPISIPTLASASLADDDILSAVLAARDSLLSDLDALSVKDGDEKRSSLDSKLKTPNSKANGISLSKPASKSDASQGRTSFSADPAADLDPDLTIDFDDDFDLDLEPIAQHQSVPSVARASSSAPADPVKPAAYDRPPWEAAPEVASTAELIETTQVDSGNTNIADAVMAQGSDINDDSASSGQGSLETSNTANDVQNNAADGNDSRSAEQDSGSKSQALQTQARHQDKVQATALTPASTTALTQTANVVERTQEREVALSTLPISGHPLDLHWYKLMASLEVGGRVRQLAVNSVCQTQSDPLPLLLKPNQKHLAADVAIVQLEQALSAALGNPRRVQVVIGIDAQRETPLELRKRFHQELLQQAHQSLIHDDNVQWLIQRMGAELDADSLVYPPELLNLRSQQIQALPELTEAAS
>NC_011663.1|WP_086010671.1|2076651_2077203_+|adenine-phosphoribosyltransferase
MAMNTETLSLIKQSIKTIPNYPKEGILFRDVTSLLENAAAYKATIDLLVEHYRGQGFTKIVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRATISQSYELEYGHDSLEIHTDAINPNDKVLVVDDLLATGGTIEATVKLIRQLGGEVKHAAFVISLPDLGGEARLTALGLELVKLCEFEGE
>NC_011663.1|WP_012587425.1|2076015_2076384_+|YbaN-family-protein
MVLKRGLFLLLGLTALALGLLGIVLPLLPTVPFILLAAFCFARSSERLHHWLMTHPWFADALTQWQELRAMRKGLKRKAMVVSALSFSVSIIVVPILWVKGLLLVMALVLLWYLKGIPEIEG
>NC_011663.1|WP_012587424.1|2074914_2075661_+|putative-DNA-binding-domain-containing-protein
MDFKQVQQSFIDYIRDPSRPLPADTDVRRMQVYRELFFNNVLGFVSNGFPVLKSLYSEEEWLALVQSFFSQHDCQSPIFIDIAGEFLDFLQQQYQPTANDPVFMLELAHYEWLELAVAVAQASGDESQLSPAQIPMQALCLSKTARVAQYHFEVQHIRQDYRPQQQLDTPVFFCLYQDADCEVCFLQLNPLSAQVLAFLQAQGQASFKEILDWLTITYPQMAPEIITQGCSQLLEQLAAKGIVRGRQS
>NC_011663.1|WP_012587423.1|2074045_2074915_+|DUF692-domain-containing-protein
MNDQKNAAQVGLGLRREMLSEFCESVPEAINFFEVAPENWMTLGGKFGRQFRELTEQHSFYCHGLSLSIGSPEPLDLAFVKNIKTFMDLHQIQIYSEHLSYCSGQGHLYDLMPIPFTDDAVKHVAARVKQVEDILERPLILENVSFYAAPGARMSELEFVNAVLQEADCKLLLDVNNIYVNSINHQYDADTFLQAMPTERIAYLHIAGHYKQAEDLLIDTHGAAINDPVWALLQRCYALHGVKPTLLERDFNVPNTAELLLELNQIHAYQAAAPSSHIQNSAHVVKRIA
>NC_011663.1|WP_006082089.1|2073500_2073932_+|hypothetical-protein
MNSVKKTAVAVALGSVVMSSAFAVNAQTNPFGFEAMDAGYQIVGSEGKCGEAKCGADMKKAAAEKAKEGKCGEAKCGAEMKKAAADKAHEGKCGEAKCGADVKKAAMAKAHEGKCGEAKCGADMKKTAEKVDAKVEAVKKEMK
>NC_011663.1|WP_006082078.1|2084785_2086915_+|bifunctional-23S-rRNA-(guanine(2069)-N(7))-methyltransferase-RlmK/23S-rRNA-(guanine(2445)-N(2))-methyltransferase-RlmL
MLNFFAAAPKGFEYSLAQELTEFGATEVKESVAGVYFTASLALAYRITLWTRLASRIVLVIYKGSCESAEQLYNAAYCVDWPAHFSNKSTFSIDFHGTGGFLNNTQFGALKIKDAIVDRFRDDDIERPNVSRVDAEFKVDAHFRNGVITIAMNFSGPSLHQRGYRSTTGEAPLKENLAANMLVRSGWQAAPSTLLDPFCGSGTVLIEAALMAADIAPGLQRSRFGFEHWRRHDKAVWQEIVEEAKARASLGVKRCEIKFYGSDIDSRLVALAKRNAENAGVLELIEFQVADALTIAPPAESGYLITNPPYGERLGNVSELLQLYYQLGDKFKKEFGGWKVAMLCSDIELVSSLKLKADKQMKMFNGALECAFNIYTLHANSTRRDTPVLPDGVDIADIAPAFANRIKKNAKLLEKWAKKEGIDSYRIYDADIPEYNVAVDKYLDYVIIQEYMAPATIPEAVTKRRLSDVLLALPSAIGINPNKMIMKTRERQKGTSQYQKLDERKLELITTEYGAKFKLNLTGYLDTGLFLDHRLTRRLVGQKSKGRRVLNLFSYTGSASVHAALGGAKSVTTVDMSNTYIAWAKDNFALNGLQGKQYEFVQSDCMQWIRDCNEQYDLIFIDPPTFSNSKRMEDSFDVQRDHVNLLASLVKLLSPTGELVFSNNKRKFKMDIETLTKMNINVTNIDDVTLPMDYKRNPHIHNTWLITHA
>NC_011663.1|WP_012587429.1|2086907_2087162_+|glutaredoxin-family-protein
MPELTQAEWDNRSYLLYHTDGCHLCELAAALLDAADIGYQAIDICDDEYLAQRYGVSIPVIKAWDDRELHWPFNATQLQEFTGA
>NC_011663.1|WP_006082076.1|2087163_2089089_+|ABC-transporter-ATP-binding-protein
MSLVRINSGSLAYGYTPLLQKADFTIQRGERVCIVGRNGAGKSSLLKVLSGDVLLDEGEFNIAGNVSVSRLQQDPPKAEQGTVYAYIAAGLKEVGEALERYHQLSHDVAHADPEQMDRMLNEMQGLQETLDHYNGWQLDSRIQQNCELLGLDPDKSLSELSGGWQRKVALARALVSEPDLLLLDEPTNHLDIDTIEWLEKFLLDYQGAIVFISHDRGFIARMATRIVDLDRGVVTSWPGNYQMYLDGKQEWLRVEAEKNALFDKRLADEEVWIRQGVKARRTRNEGRVRALKALRDERSERLNRQGNAKMAVSDTERSGKLVFDVQDLNFNLPDKNLVKNFNTTVIRGDRIALIGPNGCGKSTLIKLLIEKLQPQSGEIKVGTKLEIAYFDQYREALDPEQTVEDNVGEGKKTITINGQDRHILSYLQDFLFSPMRARTPVKALSGGEKNRLLLAKLLIRPANLIILDEPTNDLDIETLELLESLLTEYQGTLLLVSHDRAFIDNTVTSSWWYAGNGHWSEYVGGYQDAVNQGAKFYSEEPSSQKAVEAPAVETKAVEVKAAEPAKAVKKLSYKLQRELESLPTVMEQLEADILALQTTIGHSDFYSQAQDKVNQVLSQLADKEKQLEVCFERWEELESLK
>NC_011663.1|WP_006086198.1|2089117_2090944_+|DUF3466-family-protein
MKLQLDKALSLVALGVLGVLNSAHAAPVYEIVNIDSYDLQGTLEGTRNGYALGVNANDQLVGISKGKKKLSSSDVEGGVIDVADGIAPEETITYSIEKAIIANNFAFVAAQNGAAGAWLPTFDSINGTTPPSDTAVINSVDTFYYGINDAGIKVGSMTAPEKKTENTATTDVADDYWYYRDYEYRGVAKSGDTEIPLPPPYTQYVKDDKTVELGGWSAATSINNNNLAAGYASTAISKYGSDRVNYCLGTDNTLPLDICVQREQYPNSTGTRNIQYQTRAYVWQIDNDTATGTELPLGLTPATDNTLTFTAQALGLNNNGVVVGRSHVYRNNNTDKLRQDAAYWSKDTEGKYQYHWIPMGDSISSSIAYDINDSGILVGSYRSYIQGYLRDKFFVFDTNTPEVAYVTPNDFASTTTDLSSKPKDINNKGQVVGYIETTYDKEKPRPKAGFLYEKSTGEFNNLNKLLTCESKGYEKASDGSWARHQVEVQDGSGKILQYNADILVVEGSSINEDGTIVGTAFIRKPSYQFDKDGNIVIGENGLPLFELSGSGDPVTAYIPRMVVLKPASSGEACTVEDNTDTGNFERSGAATLAWLFALPLVWFRRRIR
>NC_011663.1|WP_006082074.1|2091131_2091308_+|ribosome-modulation-factor
MKRQKRDRLDRAFSKGFQAGVGGRSKELCPYANLDSRSQWLGGWREGVDGRVNGLFNK
>NC_011663.1|WP_006082073.1|2091431_2091947_-|bifunctional-3-hydroxydecanoyl-ACP-dehydratase/trans-2-decenoyl-ACP-isomerase
MNKANSFNKEELIACGHGKLFGPNSPRLPVDNMLMMDRIVTINDNGGEFGKGEIVAELDINPDLWFFDCHFITDPVMPGCLGLDAMWQLVGFYLGWEGAEGKGRALGVGEVKFTGQVLPGAKKVTYKLNIKRTIHRKLVMGIADAILEVDGRQIYSATDLKVGVFSDTSTF
>NC_011663.1|WP_012587430.1|2092021_2093755_-|AAA-family-ATPase
MNSLLIPTSSLAPEFSLPTLSETAANLSALLLGQERTVDAFKLHQAIVDQHLYLADFPSIDRQLMIKACIDSLAPLSPAYLVATRPIDKAVTFQWQSDKPQENQGSIAEKTTHYRYLSGNIRRADLIGRMAQTGTTSQYQAGALAQCHYVFICAESLWKREGLWELVMQILTHKEYRISNNLSPIPLNCKIVLVGAGMIYSQVRTEDWQFQRHFTLLAELASEIDLVRYKESQYVAWLQAVAQSVDVTLEQSSLAPLFRYSARLTEHQRRLSLSMLEFAQLMMQAKAYRGKPSINASSIEHALTQANYRHNSSEEYSGQSFDDNFINLPTSGAMVGQINGLTVIDAIDYSYGEPARITASVHYGDGEVADIERKSELGGNIHAKGMMILSACLYRIFGRDAPLHLNANIVFEQSYQEIDGDSASLAEYCCLMSAIAEQPIIQSLAITGALDQFGNVQAIGGINEKIEGFFNLCERRGLTGEQGVIMPKSNVLQLNLNPKVITAVGKGLFHIYAIEHMDQAVELLMQMPAGVADEDNDFPHDSLYGLVQERLDKLAGNGEEEIGLITRLLAKLGFFRR
>NC_011663.1|WP_012587431.1|2094439_2096437_+|methyl-accepting-chemotaxis-protein
MLLPTRISQRLTMGSIVLLLLTGLAVFGVMSLRGQPRVVAASQELIEQTGSSIVRQLALKLASIEGITLSLAHLAEVLPHEQALYLNSLPNLIDNNGDLTIAGGGIWPEPDKFVAGSTRHSFFWARGSDNLLAYSDDYNAQSGPGYHNDPWYTGARTSSVSQCLWSEAYQDTVTKVAMVTCSVPYRLTGTFAGVATIDLKLDDLAKFLTEHGNVTDGYAFALDQAGNILHFPEANKSDTMLRFTDLVGQLPWLAPVEAALKQTSINNVISVSLDKDGRLNQASEVSLFVMPDTRWVIGLVTPKTRVTGLARELTFDILLFLLPLLAILLYLAWLSGKKLLAQLEETTDQITSLGSGNLGANVELQIQRDDEIGALRRAVNTYAGTLRAMLDLITQEAKKVQFEATQLSGLSHRLAQRAEQQRLESAQLAAAITQMSSSAMEVANNTNDCAATAQSSLIVVREGQTRVASSNASIEALAGEIANATKVISQLAQDSQKVGAVLDVIKAISEQTNLLALNAAIEAARAGDQGRGFAVVADEVRTLAGRTQDSANEISTMINALQSASRLAVQAMQTGESRTVYAVAEAEGAASSLSSTVQSFDDISQRAQQIALAAQQQSQVTQEINELAVRINSISEDNSLDATALDALSLEMQKLSDRLININRA
>NC_011663.1|WP_006082070.1|2097777_2098422_+|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MISIYLVDDHELVRTGIRRILEDERGIKVVGEAPDGETAVQWARQNEADVILMDMNMPGMGGLEATRKILRYQPHAKIIVLTVHTEDPFPSKVMQAGASGYLTKGATPPEVLQAIRQVSRGQRYLSPEIAQQMALSQFNPADENPFKSLSERELQIMLMITNGEKVNDISEQLNLSPKTVNSYRYRLFAKLGISGDVELTRLAIRYKMLDAGHF
>NC_011663.1|WP_041408449.1|2098525_2100355_+|excinuclease-ABC-subunit-UvrC
MSNEFNAQSFLRTVSSSAGVYRMYDVKNDVIYVGKAKDLKKRLTSYFRKNLANVKTQALVSHIHHIDVTLTHSETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLSQHEHPRLAYHRGPQREKGHYFGPYPNGGAVRESLHLMQKLFPIRQCDDLYYKSRSRPCLQYQLSRCSAPCVGKVSNADYDEQVKLASLFLKGKDQQVISALVDKMELAAERQAYEQAARFRDQIMALRKVAEQQEVSNNKGDMDVIGVHYSSGIACFHLLFIREGKIFGSRSYYPSVPAQTDMDEVLRSFILQFYLNADIQRTIPKEVVISHNFEELHELEAAISEALDKKFSIKTNVRADRASFLRLAVTNATNAVITRLSHKNTVEQRFVLLEEILELSAPIQRMECFDISHTMGESTVASCVVFNREGPHKGEYRRYNIEGITPGDDYAAMKQAVSRRFDKIEAGGKIPDILFIDGGLGQLRIAQKIVDEKFVHLDKAPQLIGVAKGEGRKPGLETLILGDTETSFSLEGDSPALHLIQHIRDESHRFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELVKVPGISIEMAQTIHDALRG

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Crispr_ID: NC_011663_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011663_2

4293900-4293985

Orphan

Consensus_repeat	Method
GTTACACCAAAACAGGCATTGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011663_2

>merge|NC_011663|2|4293900-4293985|CRISPRCasFinder
GTTACACCAAAACAGGCATTGTTGCACTGAATGTCAGGACAGGCATAACTCTGTACTCAACCGTTACACCAAAACAGGTATTGTTG

>NC_011663|2|1|4293900-4293985|CRISPRCasFinder
GTTACACCAAAACAGGCATTGTTG	CACTGAATGTCAGGACAGGCATAACTCTGTACTCAACC
GTTACACCAAAACAGGTATTGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011663.1\|WP_006080183.1\|4302130_4302706_-\|UPF0149-family-protein	unknown	unknown	gnl\|CDD\|234976
NC_011663.1\|WP_012588559.1\|4291123_4291666_-\|hypothetical-protein	unknown	unknown	unknown
NC_011663.1\|WP_006079577.1\|4280132_4281242_-\|ISAs1-like-element-ISSba2-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_011663.1\|WP_012588556.1\|4284790_4285840_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NC_011663.1\|WP_012588562.1\|4297887_4298982_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NC_011663.1\|WP_012588560.1\|4292349_4293546_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NC_011663.1\|WP_006083112.1\|4289045_4290146_+\|ISAs1-like-element-ISSba1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_011663.1\|WP_012588566.1\|4304286_4305033_-\|dihydromonapterin-reductase	unknown	unknown	gnl\|CDD\|180586
NC_011663.1\|WP_012588565.1\|4303550_4304255_+\|5-formyltetrahydrofolate-cyclo-ligase	unknown	unknown	gnl\|CDD\|182385
NC_011663.1\|WP_041408538.1\|4284250_4284730_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380097
NC_011663.1\|WP_012588563.1\|4299432_4300656_-\|FAD-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|236139
NC_011663.1\|WP_012588561.1\|4294461_4297350_-\|aminomethyl-transferring-glycine-dehydrogenase	unknown	unknown	gnl\|CDD\|235432
NC_011663.1\|WP_041408539.1\|4288498_4289023_-\|hypothetical-protein	unknown	unknown	unknown
NC_011663.1\|WP_012588558.1\|4287226_4288117_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
NC_011663.1\|WP_012588557.1\|4285855_4287088_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NC_011663.1\|WP_012588567.1\|4305317_4305716_+\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|367833
NC_011663.1\|WP_006080182.1\|4302941_4303244_+\|cell-division-protein-ZapA	unknown	unknown	gnl\|CDD\|377476
NC_011663.1\|WP_012588564.1\|4300698_4301925_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	unknown	unknown	gnl\|CDD\|273911
NC_011663.1\|WP_012588554.1\|4283187_4284270_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NC_011663.1\|WP_006080188.1\|4297472_4297862_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918

Protein	Function_ID	Function_description	E-value
NC_011663.1\|WP_006080183.1\|4302130_4302706_-\|UPF0149-family-protein	gnl\|CDD\|234976	PRK01736, PRK01736, hypothetical protein; Reviewed.	6.4068e-47
NC_011663.1\|WP_006083112.1\|4289045_4290146_+\|ISAs1-like-element-ISSba1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	1.24658e-23
NC_011663.1\|WP_006079577.1\|4280132_4281242_-\|ISAs1-like-element-ISSba2-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	8.11656e-29
NC_011663.1\|WP_012588556.1\|4284790_4285840_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NC_011663.1\|WP_012588562.1\|4297887_4298982_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NC_011663.1\|WP_006080182.1\|4302941_4303244_+\|cell-division-protein-ZapA	gnl\|CDD\|377476	pfam05164, ZapA, Cell division protein ZapA. ZapA is a cell division protein which interacts with FtsZ. FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. The interaction of FtsZ with ZapA drives its polymerization and promotes FtsZ filament bundling thereby contributing to the spatio-temporal tuning of the Z-ring.	6.31666e-21
NC_011663.1\|WP_012588566.1\|4304286_4305033_-\|dihydromonapterin-reductase	gnl\|CDD\|180586	PRK06483, PRK06483, dihydromonapterin reductase; Provisional.	2.56464e-145
NC_011663.1\|WP_012588565.1\|4303550_4304255_+\|5-formyltetrahydrofolate-cyclo-ligase	gnl\|CDD\|182385	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional.	5.49339e-69
NC_011663.1\|WP_041408538.1\|4284250_4284730_-\|hypothetical-protein	gnl\|CDD\|380097	pfam18050, Cyclophil_like2, Cyclophilin-like family. This entry represents a family of cyclophilin-like proteins found in a range of bacterial species.	1.69153e-44
NC_011663.1\|WP_012588563.1\|4299432_4300656_-\|FAD-dependent-monooxygenase	gnl\|CDD\|236139	PRK08013, PRK08013, oxidoreductase; Provisional.	0
NC_011663.1\|WP_012588561.1\|4294461_4297350_-\|aminomethyl-transferring-glycine-dehydrogenase	gnl\|CDD\|235432	PRK05367, PRK05367, aminomethyl-transferring glycine dehydrogenase.	0
NC_011663.1\|WP_012588560.1\|4292349_4293546_-\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NC_011663.1\|WP_012588558.1\|4287226_4288117_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.35534e-108
NC_011663.1\|WP_012588557.1\|4285855_4287088_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	2.58815e-95
NC_011663.1\|WP_012588567.1\|4305317_4305716_+\|DUF393-domain-containing-protein	gnl\|CDD\|367833	pfam04134, DUF393, Protein of unknown function, DUF393. Members of this family have two highly conserved cysteine residues near their N-terminus. The function of these proteins is unknown.	3.61483e-26
NC_011663.1\|WP_012588564.1\|4300698_4301925_-\|2-octaprenyl-6-methoxyphenyl-hydroxylase	gnl\|CDD\|273911	TIGR01984, 2-polyprenyl-6-methoxyphenol_hydroxylase, 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	0
NC_011663.1\|WP_012588554.1\|4283187_4284270_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	1.75488e-44
NC_011663.1\|WP_006080188.1\|4297472_4297862_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	5.20067e-75

>NC_011663.1|WP_012588560.1|4292349_4293546_-|threonine--tRNA-ligase
MKTHREIAEQLDLFHSEPQAPGMIFWHPNGWVLFRDIQEHMRRVYRRNGFEEVNTPVFMKKELWQTSGHMDMFAENMFFGGGKENMDEYVLKPMSCPAHILLFKRGVHSHRDLPLRLFEFGLVHRNESSGSLNGCLRARQFTQDDAHVFCCWSQAEEEIRGFLQRAKQVYGDYGYHNLDVKISTKPEKALGSDEQWCRAQKLLDSACQIEGFDAEYQAGEGAFYGPKIELSLTDSMGRRWQCGTIQFDFNLPERFDVHYTNEQGEFERPVIMHQAMYGSIERWLGILLEVSQGNLPDWLHPVPVAIASVNESNSQFVRQLATLCLARDMRVLVDISQNSVARKMKRFHKQKVPYILTVGDKEEAEKCVSVKCRKDGVMTHIPLAELANYLADKLERKL
>NC_011663.1|WP_012588559.1|4291123_4291666_-|hypothetical-protein
MSIQKFSLLAIGTIISGCATTYVEQSSGDLARVRFVAKNSGAPTAVNLYSEKNCENKIPVTSLLGRSIELFPIEKRLGIPLWDYSANAAKEFNMPANVEQNIMIIQNTGGLSSIACGAYFQFTYEKNNDYEIIFDSQKCTATIYKINGTVENAKRELINTYSSSSNVSQSCITEFKNNAR
>NC_011663.1|WP_006083112.1|4289045_4290146_+|ISAs1-like-element-ISSba1-family-transposase
MSLFEHLKLIEDPRSHINLDHDLVDIIFLVLAAIASGCDGWQAIEEFGQENLSWLRQHRNFDKGIPTRHSIARIIKVIDTEILVMTLFSWANSLRETSSKPLIAIDGKTLRGAVNQHGTKNALHLVSAFDTEQGIVLYQQDTQTKGNEIATVQALLHMLDIKDAVVTFDALHCQRETLQQIIKAKGDYVVQVKGNQPLLRQAIEMQFQPHWDNDGVDILSIEEDDKGHGRKERRTTFQIPAKLPQALAKKWPSAKSLIAVERQRTCKGIATINTDYYLSSLPLDVELAAKAVRQHWHIENLQHWVLDVTFREDCSRIGDRENAKKMALFRRIVLNLLEQHPLKASKPTKIRKAAWNGDFRSEIFFG
>NC_011663.1|WP_041408539.1|4288498_4289023_-|hypothetical-protein
MPDQIMQIGRSSLLLTKYDPALMAQWVDGINKLIETSDVIPFNEDYKSDPKVEKAFHSCAIINLKKSGGKSFSLSDDLSSYVDSDWDLLWEQIQEINPDLIICGATYPLIESKLGCPQKSAEWLYHAQGYHFIDFWHPSNQWPHKVKYYSLMSALKQSKELWMPKRSFVAELLE
>NC_011663.1|WP_012588558.1|4287226_4288117_+|LysR-family-transcriptional-regulator
MMKRNLNDLLCFVTVAREGSFTRAAALLGVTQSALSQAISGLETRLEIRLLTRTTRSVSATEAGERLLNAIGNRFDEIESELDALTAMRDKPAGTVRITCGDFVLRTLLIPKLSPLLHNYPDIKVEFDVNYGFRDIVADRFDAGIRLGDTIDKDMIAIPIGPHQTMAAVATPAYFAQHPIPKHPQDLIEHNCINIRFPTHGGLYVWEFEKDGKQLNVHVDGQLIFNASHHIVDAALQSNGIAYLPEAEFEPHIKTGRLVKVLEDWSLSFAGYYLYYPSRRQPSPAFTLVADALRLR
>NC_011663.1|WP_012588557.1|4285855_4287088_-|MFS-transporter
MTTQVCETSEPRCAIQQASQQQTANWSGVLAMSLCVFALVASEFMPVSLLTPIAADLNVSEGLVGQGIAISGFFAVLTSLSIASIAKDTDRKSLLLGLISLMLVSGIVIAYAPNYVVYMLGRSLIGVVIGGFWSLSGASAIRLVPTDKIPKALAIFNGGNALAMVIAAPLGSYLGAHIGWRGAFFGLVPVALIAFVWMWFSLPAMKPEKRVAGSVNVFSLLNKPLVRLGMLAIVLFFMGQFALFTYVRPFLETAIHIESNNLSFILLVMGVAGFMGTLLVSLFLKNNLYRTLIFIPLVMAVIALALILFSDSSVAVTTLLALWGGVATAAPVAWWTWLARTMPEDSEVGGGLMVAVIQLAIGLGSTLGGVLFDFNGYHSTFLLSATLLAAAALLAYWTQRSTPEPLLHAQ
>NC_011663.1|WP_012588556.1|4284790_4285840_-|NAD(P)-dependent-alcohol-dehydrogenase
MKIKAFGANASHLPLEPMTITRRLPGEDDVQISIDYCGVCHSDLHQVRSEWAGTLYPCVPGHEIVGRVTAVGGHVSKFNVGDMVGVGCIVDSCKHCHECIDDQENYCDHMVGTYNGPTHDTPGHTLGGYAEQIVVDERYVLRISHPQAQLAAVAPLLCAGITTYSPLRHWHAGPGKKVGIVGIGGLGHMGIKLAHAMGAHVVAFTTSESKRDAAKALGADEVVVSKNADEMAKHLQSLDLIVNTVAAPHDLDAFLSLLKRDGTMTLVGAPATNHPSPNAFNLIMKRRSLAGSMIGGIRETQEMLDFCAEHNIVSDIELIRADEINAAYERMLKGDVKYRFVIDNATLAR
>NC_011663.1|WP_041408538.1|4284250_4284730_-|hypothetical-protein
MVLLLLMVGIEFVSAATSASASQYNESMTMPLAKKSAVKIRIISADTTLTATLENTQAARDFVTLLPLDLTLADYNGTEKIADLPAKLSHKDAPEGYTPKVGDIAYFAPWGNLAFFYHDFGYSRGLIRLGQIDGSVDALMGDSDIKVRIEQAQNGDDSE
>NC_011663.1|WP_012588554.1|4283187_4284270_-|alpha/beta-hydrolase
MAMIQNREPTMYMKNLNKITKAIIMLGLLSTASLPAFAQDMSNGADNFYQSDSVAMQRVTFKNQYNMTVVGNLFIPKKLDKKMTHPAIVVGHPMGAVKEQSANLYATKMAEQGFITLSLDLSFWGESEGQPRNAVSPDIYAEDFSAAVDYLGTQTLVDRTRIGVLGICGSGSFVISAAKIDPRMKAIATVSMYNMGAVNRHALNHSQTVEQRKKLIAAAAKQRDLEFGGGEIEYTSGTVHQLDKDTHPIQREFYDFYRTPRGEYTPASSSPQLTTHPTLTSNIKFMNFYPFNDIETISPRPMLFITGDKAHSKEFSEEAYRLAGEPKELYYVKGAGHVDLYDRTALIPWNKLTEFFSKTL
>NC_011663.1|WP_006079577.1|4280132_4281242_-|ISAs1-like-element-ISSba2-family-transposase
MSLFDHLSLVEDTRSHINQRHNLVDVLFLILSAVASGQDGWAEIQQFGELKLEWLRKFRPFANGIPRRHTIARILKAVGPENLQLCLFSWINDIRTASAKPIIAIDGKTLRGASKLGCNTLHSVGAFDINNGLALYQEMASGKGKEIETVQSLITMLNINKALITMDALHAQRATLEAIVARKGDYVVQVKSNQRTLFQAVKAQYDVAFQDDSQLAQFACSEKGHGRTEQRITFQIPSKLSPKLQEKWPSVKTLIAVERHRKIGNKTSIETSFYLSSHDIDPEYIATAVRGHWRIENSLHWVLDVVYREDACRVHEQRTAESLAIVRRMALNLAKLEITQKRSMKSKLHRSLLSDEYRELMIFADVKSI
>NC_011663.1|WP_012588561.1|4294461_4297350_-|aminomethyl-transferring-glycine-dehydrogenase
MTKQTLTQLEQHDLFLRRHIGPDSNQQQAMLNFVGAESLEDLTAQIVPESIRLSQDLSIGDSCGEAEGIAYIRGLADQNQVFKSYIGMGYYGTQVPNVILRNVFENPGWYTAYTPYQPEIAQGRLEAILNFQQVSMDLTGLDLASASLLDEATAAAEAMALAKRVSKAKKANIFFVADDVFPQTLDVVKTRAECFGFEVVVGPASEAVNYELFGALFQYTNRFGQITDFTELFATLRAKNVIVTVAADIMSLVLLKSPGSMGADVVFGSAQRFGVPMGFGGPHAAFFVARDEHKRSMPGRIIGVSKDARGNRALRMAMQTREQHIRREKANSNICTAQILLANMASFYAVFHGPDGLKTIASRIHRFADILAAGLQAKGVSLVNSTWFDTISIKGLDVAAVNARALAAEMNLRFDADGTVGVSLDETTLRTDIDALFDVILGAGHGLDVAALDAQIVGQGSQSIPAALVRQDAILSHPTFNRYQSETEMMRYIKRLESKDLALNYSMISLGSCTMKLNAAVEMLPVSWPEFANMHPFSPLDQAKGYTQLIEELSTWLVNITGYDAVCIQPNSGAQGEYAGLLAIKKYHESRGDAHRNICLIPQSAHGTNPASAQLAGMQVVVTACDKQGNVDLDDLKTKAAEVAGNLSCIMITYPSTHGVYEESIREICDIVHQHGGQVYLDGANMNAQVGLTSPGFIGADVSHLNLHKTFAIPHGGGGPGMGPIGVKSHLAPFVAGHVVVKPGRESDHNGAVSAAPYGSAGILPISWMYIKLLGSQGLKKSTQTALLNANYVMKKLSEHYPVLFRGRNDRVAHECIIDLRPLKEASGVTEMDIAKRLNDYGFHAPTMSFPVAGTLMIEPTESESKVELDRFIDAMVSIRAEIAKVESGEWPVDNNPLHNAPHTMADIMDPEFDTRPYSREVAVFPSAAVRTNKFWPTVNRIDDVYGDRNLMCSCAPLSDYE
>NC_011663.1|WP_006080188.1|4297472_4297862_-|glycine-cleavage-system-protein-GcvH
MSNIPTELKYASSHEWIRKEEDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGEDCAVAESVKAASDIYAPISGEVIAVNEALEDSPELVNSSAYGEGWFFRVMPSDESEVDALLDAEGYQAVIDED
>NC_011663.1|WP_012588562.1|4297887_4298982_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MANKTILFNKHLESNAKMVDFHGWDMPLNYGSQIEEHNAVRQDAGMFDVSHMTVVDVIGNDACAFLRKLLANDVAKLKVPGKALYGGMLDENAGVIDDLITYYLTDTNYRVVVNSATREKDLAWIAKQSQGFDVTVTERPELAMIAVQGPNAKAKAAAVLSAEQNTAIEGMKPFFGKQAGSLFIATTGYTGEAGYEIIVPEDEAQAMWQALLDQGVKPCGLGARDTLRLEAGMNLYGLDMDETINPLAANMGWTIAWEPSDRDFIGRKALETLRDAGTDKLVGLVMEEKGVLRHDMPVFFTDSAGVEHQGVITSGTFSPTLGYSIAMARVPNSIGDTAEVEMRKKRVAVRVVAPNFVRNGKQAF
>NC_011663.1|WP_012588563.1|4299432_4300656_-|FAD-dependent-monooxygenase
MLSSQAYDIAIVGGGMVGLATAIGLAQANLNVVVIDAGHTDAVVGEPRLRVSAINKASQRLLENLGAWTYLDTSRATPYQKMAVWDKDGFGKIAFDANSISETSLGAIIENDAISYALAKRVGEFDNITHIENQRLERIAFGEREAWLTLANGAESGIESVSAALVIAADGANSWVREQCQIPLTFWDYGHHAIVATIRTEMPHLATARQVFLKDGPLAFLPLYEDNLCSIVWSVPPERANELLAMDKVQFERNLTAAFDGRLGICQLESERQAFPLRMRYARHFARHRLVLAGDAAHTIHPLAGQGVNLGFLDAASIIEVISELQQAGKDIGDYAQLRALERWRKADAMEMIAAMEGFKRLFEGTNPLKKAIRDLGLNLVDNVAGLKTVFIQQAMGNKSALPKLCR
>NC_011663.1|WP_012588564.1|4300698_4301925_-|2-octaprenyl-6-methoxyphenyl-hydroxylase
MTATNHMDTSVQHVDIAIVGGAMAGATLALALARLSLSAARPLSIALIEAHLPDKQHPGFDARSIAIAHGSVFELSRLGLWPKLAHLGTAIENIHVSDRGHFGMTELNAAQFHLDALGQVVELERVGQVLFNELNKSEVKLYCPAKLAQVEPAVEGHTLVLDTGERLKAKLVVAADGLQSKVRSSFDLPVTQVAFEQTAIIANIQTDKPHQHLAYERFTQTGPLALLPMADSQGQPRLSLVWALDDARAKQMQTAPKAEFLAALQQDFGYRAGTFIDVSARHAYPLNLSYMARPIHHRCVFIGNAAQTLHPIAGQGFNLGLRDVVSLLDVLKTALAQGDDIGSAAVTHAYLNAREHDRNSTIRNIEFLVRGFSNQYWPMALGRNLGLRLLSWFPPLKTPVAQKAMGWK
>NC_011663.1|WP_006080183.1|4302130_4302706_-|UPF0149-family-protein
MATPPSLRIDSLKLALDAAEIGQHPVEVHGALVGLICGGVAQTGDTWIKPLFDLMNDGQPLPAQLHQLVCDLFNDSVARLVDFEFGFMPLLPEEEEPLSQRVEALSLWTQSFLTGMAIIQPKLNQASAEVREVIKDLAEIAQVEFDVADDEESEAAYTELLEFVRIAAIMCYSEFGPEIPLGETDDTAVVH
>NC_011663.1|WP_006080182.1|4302941_4303244_+|cell-division-protein-ZapA
MSNSAVEITLLGRTYSIACPKGQEDALRTVALGVEQQLTALKTRTNSLSREEIAIMAALNIGHELFQEKQKNKHYMQQMDDRISLLQSTLENALVERSTK
>NC_011663.1|WP_012588565.1|4303550_4304255_+|5-formyltetrahydrofolate-cyclo-ligase
MSTSSKLSHFPPQSDTSHLAVDAAVGEMIDVASHAANIAIHTQENRNQLRKSIRTARKSLSETEQTQASLSASQRMLDKLQANKAQHVALYLTHDGELATPPLIAALWQLGINTYLPRLHPFNAGQLLFLHYSADTPMQANQFGILEPKLDVRAIIPVTELDVVITPLVAFDLMGNRMGMGGGYYDRTLANWQLKGKPLPMGYAHDCQQVVSLPCEHWDVPLPFIITPSRVLTF
>NC_011663.1|WP_012588566.1|4304286_4305033_-|dihydromonapterin-reductase
MTSPIIITGVGKRIGYALAKHFLAQGQQVIGTYRSHYDSIDELNALGATLYPCDFYDDAQVSFLIAVLAKLPQIRAIIHNASDWLPDPVLTKNEPLKSTTFAPSQVLQRMMQVHVSVPYQLNLALEAQLRAAAGDEIGGSDVIHITDYVAEKGSQKHIAYAASKAALHNMTLSFAAKFAPEVKVNSIAPAMILFNAGDDAVYQQKTLAKALLPKEAGNEEIIELVDYLLNSRYVTGRCHNVDGGRQLK
>NC_011663.1|WP_012588567.1|4305317_4305716_+|DUF393-domain-containing-protein
MELRIFYDGNCPLCSAEMRQLKARDPNNLIALEDLNASDFSERFSHIDKDYANTILHGETAKGEVLLGLDVTCKAWALTGTRAWIQLLRLPVIKTVADWTYLRFAKHRYRISYLLTGKARCDDNCQIPTKRR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

676431 : 751741

Cedratvirus(33.33%)

integrase,transposase

attL 675780:675793|attR 682338:682351

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
675780:675793	attL	NA	NA	NA	NA
WP_006083191.1\|676431_677754_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_006083190.1\|677737_679291_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_006083189.1\|679283_681365_+	hypothetical protein	NA	NA	NA	NA
WP_006083188.1\|681364_681892_+	hypothetical protein	NA	NA	NA	NA
WP_006083187.1\|681971_682409_+	hypothetical protein	NA	NA	NA	NA
682338:682351	attR	NA	NA	NA	NA
WP_006083186.1\|682405_684559_+	AAA family ATPase	A0A285PXL3	Cedratvirus	1.3e-26	27.7
WP_006083185.1\|685323_685602_+	hypothetical protein	NA	NA	NA	NA
WP_006079577.1\|685598_686708_-\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_006083183.1\|692590_693760_+	nucleotide sugar dehydrogenase	O41091	Paramecium_bursaria_Chlorella_virus	1.6e-79	41.6
WP_006083180.1\|695777_696455_+	hypothetical protein	NA	NA	NA	NA
WP_006083179.1\|696574_697432_+	DUF1835 domain-containing protein	NA	NA	NA	NA
WP_006083178.1\|697539_698649_+\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_006083177.1\|699106_699361_-	hypothetical protein	NA	NA	NA	NA
WP_006083176.1\|699702_700104_+	DUF4354 family protein	NA	NA	NA	NA
WP_006083175.1\|700476_702765_+	hypothetical protein	NA	NA	NA	NA
WP_012586714.1\|703818_710409_+	hypothetical protein	NA	NA	NA	NA
WP_006083173.1\|710501_715124_+	hypothetical protein	NA	NA	NA	NA
WP_006083172.1\|715428_718305_+	RHS repeat protein	NA	NA	NA	NA
WP_006083171.1\|719122_721987_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_006083170.1\|722150_722711_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	3.8e-31	41.4
WP_006083169.1\|726122_726569_-	hypothetical protein	NA	NA	NA	NA
WP_006083168.1\|726555_727179_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_012586715.1\|727513_730456_-	Ig-like domain-containing protein	NA	NA	NA	NA
WP_012586716.1\|731332_734239_+	Ig-like domain-containing protein	NA	NA	NA	NA
WP_006083165.1\|735585_736155_+	hypothetical protein	NA	NA	NA	NA
WP_006083164.1\|736218_736668_+	hypothetical protein	NA	NA	NA	NA
WP_012586717.1\|736670_739517_+	TcfC E-set like domain-containing protein	NA	NA	NA	NA
WP_006083162.1\|739509_740244_+	hypothetical protein	NA	NA	NA	NA
WP_006083161.1\|740245_741253_+	hypothetical protein	NA	NA	NA	NA
WP_006083160.1\|742095_742647_+	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_006083112.1\|743283_744384_-\|transposase	ISAs1-like element ISSba1 family transposase	NA	NA	NA	NA
WP_012586718.1\|745080_748020_+	Ig-like domain-containing protein	NA	NA	NA	NA
WP_006083157.1\|748717_749290_+	porin family protein	NA	NA	NA	NA
WP_006079577.1\|750631_751741_+\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

859526 : 925861

Vibrio_phage(33.33%)

portal,terminase,transposase,protease,integrase

attL 863765:863779|attR 926903:926917

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012586765.1\|859526_860879_-\|protease	DegQ family serine endoprotease	A0A1B1IRD3	uncultured_Mediterranean_phage	4.4e-09	27.6
WP_012586766.1\|861292_862405_+	cell division protein ZapE	NA	NA	NA	NA
WP_006083053.1\|862695_863124_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_006083052.1\|863138_863531_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_012586767.1\|863684_863873_+	DUF2065 domain-containing protein	NA	NA	NA	NA
863765:863779	attL	NA	NA	NA	NA
WP_012586768.1\|863945_865241_+	adenylosuccinate synthase	A0A2R8FF47	Brazilian_cedratvirus	1.6e-64	36.7
WP_011847814.1\|865353_866010_+	sel1 repeat family protein	NA	NA	NA	NA
WP_006083048.1\|866049_868473_+	ribonuclease R	Q0GXV6	Lactococcus_phage	8.1e-62	32.3
WP_012586769.1\|868473_869214_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_012586770.1\|869362_870805_-	MFS transporter	NA	NA	NA	NA
WP_006083045.1\|871028_871772_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_006083044.1\|871985_872381_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_006083043.1\|872389_872695_+	primosomal replication protein N	NA	NA	NA	NA
WP_006083042.1\|872707_872935_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_006086059.1\|872971_873424_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_012586771.1\|873691_875890_-	S46 family peptidase	NA	NA	NA	NA
WP_006083039.1\|876015_877422_+	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	2.1e-179	70.8
WP_012586772.1\|877525_878602_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	3.5e-25	28.2
WP_006083037.1\|879141_879606_-	chemotaxis protein CheX	NA	NA	NA	NA
WP_012586773.1\|880450_882643_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_012586774.1\|882743_883418_+	Fe2+-dependent dioxygenase	A0A127KM56	Cyanophage	1.2e-15	32.5
WP_012586775.1\|883855_884341_+	hypothetical protein	NA	NA	NA	NA
WP_012586776.1\|884532_884946_+	hypothetical protein	NA	NA	NA	NA
WP_012586777.1\|885172_885814_+	hypothetical protein	NA	NA	NA	NA
WP_012586779.1\|886000_886270_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_011847801.1\|886266_886797_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_041408338.1\|887143_887686_+	hypothetical protein	NA	NA	NA	NA
WP_012586781.1\|887850_888132_+	hypothetical protein	NA	NA	NA	NA
WP_012586783.1\|888396_888534_-	hypothetical protein	NA	NA	NA	NA
WP_012586784.1\|888530_888761_-	hypothetical protein	NA	NA	NA	NA
WP_012586785.1\|888757_889036_-	hypothetical protein	NA	NA	NA	NA
WP_012089044.1\|889036_889330_-	hypothetical protein	NA	NA	NA	NA
WP_012586786.1\|889326_890025_-	hypothetical protein	Q5QF31	Pseudomonas_virus	8.6e-17	36.3
WP_012586787.1\|890021_890612_-	ead/Ea22-like family protein	NA	NA	NA	NA
WP_006083880.1\|890622_890787_-	hypothetical protein	NA	NA	NA	NA
WP_011847795.1\|890823_891171_-	hypothetical protein	NA	NA	NA	NA
WP_012586788.1\|891196_891457_-	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_012586789.1\|891453_891807_-	hypothetical protein	NA	NA	NA	NA
WP_041408576.1\|891994_892849_+	hypothetical protein	NA	NA	NA	NA
WP_190273083.1\|893379_893796_+	hypothetical protein	NA	NA	NA	NA
WP_012586792.1\|893941_894283_+	HNH endonuclease	NA	NA	NA	NA
WP_012586793.1\|894275_894620_+	hypothetical protein	NA	NA	NA	NA
WP_041408342.1\|894649_895000_+	hypothetical protein	NA	NA	NA	NA
WP_006079577.1\|894996_896106_-\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_012586794.1\|896654_897356_-	helix-turn-helix transcriptional regulator	R9TNM0	Vibrio_phage	7.5e-61	48.5
WP_012586795.1\|897435_897639_+	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_012586796.1\|897670_898279_+	hypothetical protein	NA	NA	NA	NA
WP_041408346.1\|898443_899193_+	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	7.1e-33	45.7
WP_012586798.1\|899189_899876_+	replication protein P	I6PBN0	Cronobacter_phage	1.6e-10	29.5
WP_012586799.1\|899865_901122_+\|integrase	tyrosine-type recombinase/integrase	A0A067ZJC5	Vibrio_phage	8.5e-47	33.9
WP_012586800.1\|901177_901396_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_190273084.1\|901442_901760_+	hypothetical protein	NA	NA	NA	NA
WP_012586802.1\|901768_902383_+	oligoribonuclease	M4M9I5	Vibrio_phage	2.2e-64	63.0
WP_012586803.1\|903303_903828_+	lysozyme	A0A2H4P869	Pseudomonas_phage	5.9e-18	38.7
WP_012586804.1\|903817_904321_+	hypothetical protein	NA	NA	NA	NA
WP_012586805.1\|904431_904767_+	hypothetical protein	NA	NA	NA	NA
WP_012088279.1\|904720_905254_+\|terminase	terminase small subunit	O64316	Escherichia_phage	3.1e-35	49.1
WP_012586806.1\|905228_907226_+\|terminase	phage terminase large subunit family protein	A0A1B0Z2K0	Pseudomonas_phage	2.6e-191	49.8
WP_012586807.1\|907268_907475_+	hypothetical protein	NA	NA	NA	NA
WP_012586808.1\|907524_909099_+\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	3.3e-125	48.2
WP_012586809.1\|909070_911080_+\|protease	Clp protease ClpP	A0A1B0YZU0	Pseudomonas_phage	4.9e-222	63.2
WP_012586810.1\|911160_911484_+	DUF2190 family protein	A0A076G9K1	Pseudoalteromonas_phage	7.5e-08	37.4
WP_012586811.1\|911476_911821_+	hypothetical protein	NA	NA	NA	NA
WP_012586812.1\|911824_912382_+	hypothetical protein	NA	NA	NA	NA
WP_012586813.1\|912415_912841_+	hypothetical protein	NA	NA	NA	NA
WP_012586814.1\|912837_913560_+	hypothetical protein	A0A2I7S8N4	Vibrio_phage	4.7e-26	34.3
WP_012586815.1\|913652_917573_+	tape measure protein	A0A2I7S9D9	Vibrio_phage	1.0e-37	36.1
WP_012586816.1\|917611_917983_+	hypothetical protein	A0A2I7QS24	Vibrio_phage	1.7e-24	51.4
WP_012586817.1\|917990_920465_+	hypothetical protein	A0A2I7S8M8	Vibrio_phage	2.0e-233	52.2
WP_012586818.1\|920476_921424_+	hypothetical protein	A0A088C4T9	Shewanella_sp._phage	9.9e-32	31.9
WP_012586819.1\|921416_921716_+	hypothetical protein	A0A2I7QRU3	Vibrio_phage	5.0e-06	36.4
WP_012586820.1\|921715_923500_+	hypothetical protein	A0A2I7QS09	Vibrio_phage	7.6e-150	45.4
WP_012586821.1\|923525_923738_+	hypothetical protein	A0A088C533	Shewanella_sp._phage	7.1e-15	62.9
WP_012586822.1\|923785_924127_-	hypothetical protein	NA	NA	NA	NA
WP_012586823.1\|924232_924529_-	hypothetical protein	NA	NA	NA	NA
WP_012586824.1\|924796_925861_-\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	1.9e-116	57.5
926903:926917	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1425014 : 1432584

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006086878.1\|1425014_1426682_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	3.9e-39	28.0
WP_012587088.1\|1426871_1428125_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	3.2e-102	53.6
WP_006082643.1\|1428385_1428835_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_012587089.1\|1428981_1430136_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.0e-51	35.7
WP_006082641.1\|1430147_1430804_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.7e-27	34.0
WP_006082640.1\|1430870_1431974_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.5e-68	39.7
WP_006082639.1\|1432104_1432584_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.7e-30	47.0

DBSCAN-SWA_4

1467872 : 1478992

uncultured_Mediterranean_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006086855.1\|1467872_1468622_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.3e-71	52.2
WP_006082610.1\|1468618_1469254_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.4e-34	49.4
WP_012587106.1\|1469354_1470251_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_006086853.1\|1470331_1471312_+	RNA polymerase sigma factor RpoS	M4SMP8	Cyanophage	8.4e-34	32.7
WP_012587107.1\|1471515_1474086_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	3.3e-29	23.1
WP_011847432.1\|1474469_1475537_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.4e-111	61.9
WP_080517123.1\|1475599_1476025_+	regulatory protein RecX	NA	NA	NA	NA
WP_012587110.1\|1476367_1478992_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.2e-65	36.4

DBSCAN-SWA_5

2321438 : 2331738

Faustovirus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012587530.1\|2321438_2322653_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	7.4e-32	31.5
WP_006081856.1\|2322690_2323074_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	2.2e-51	76.6
WP_006081855.1\|2323088_2323412_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.8e-22	46.3
WP_012587531.1\|2323428_2323953_+	co-chaperone HscB	NA	NA	NA	NA
WP_012587532.1\|2324020_2325883_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.2e-102	38.3
WP_006081852.1\|2325891_2326230_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_006081851.1\|2326388_2327294_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	9.4e-40	33.6
WP_006081850.1\|2327407_2327605_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_006081849.1\|2327822_2327990_+	hypothetical protein	NA	NA	NA	NA
WP_006081848.1\|2328188_2328620_+	nucleoside-diphosphate kinase	K7YW26	Megavirus	1.1e-17	40.2
WP_006081847.1\|2328982_2329426_+	Hsp20 family protein	A0A2L0V0Y9	Agrobacterium_phage	3.7e-21	51.5
WP_006081846.1\|2329525_2330020_-	acetolactate synthase small subunit	NA	NA	NA	NA
WP_006081845.1\|2330019_2331738_-	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.6e-56	29.0

DBSCAN-SWA_6

2605724 : 2617252

uncultured_Caudovirales_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012587685.1\|2605724_2608478_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	1.9e-83	48.5
WP_011846837.1\|2608534_2609161_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_012587686.1\|2609169_2610501_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.5e-78	39.0
WP_011846839.1\|2610493_2610868_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.8e-08	36.5
WP_012587687.1\|2610886_2612173_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.6e-99	46.0
WP_006081642.1\|2612458_2612797_-	TusE/DsrC/DsvC family sulfur relay protein	NA	NA	NA	NA
WP_006081641.1\|2612790_2613072_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_012587688.1\|2613071_2613428_-	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_012587689.1\|2613442_2613832_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	3.9e-19	39.4
WP_012587690.1\|2613901_2614561_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	4.3e-34	43.9
WP_011846842.1\|2614962_2615865_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012587691.1\|2615980_2617252_+	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	3.9e-15	24.8

DBSCAN-SWA_7

3046936 : 3105737

Vibrio_phage(36.36%)

tail,portal,terminase,capsid,head,integrase,protease,transposase

attL 3058347:3058362|attR 3109096:3109111

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006079577.1\|3046936_3048046_+\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_041408507.1\|3048042_3048885_-	DUF1444 family protein	NA	NA	NA	NA
WP_041408508.1\|3049120_3051367_-	TonB-dependent receptor	NA	NA	NA	NA
WP_012587902.1\|3051761_3053552_-	acyl-CoA dehydrogenase C-terminal domain-containing protein	NA	NA	NA	NA
WP_012587903.1\|3053798_3054647_+	D-hexose-6-phosphate mutarotase	NA	NA	NA	NA
WP_012587904.1\|3054901_3055777_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_006087464.1\|3056085_3056565_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_012088890.1\|3056683_3057052_-	hypothetical protein	NA	NA	NA	NA
WP_011846537.1\|3057286_3058525_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
3058347:3058362	attL	NA	NA	NA	NA
WP_006081231.1\|3058762_3058996_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.4e-10	45.2
WP_006081230.1\|3059160_3059907_-	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	6.0e-16	33.7
WP_012587905.1\|3059916_3060843_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_006081228.1\|3060905_3061865_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_012587907.1\|3067641_3068280_-\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	2.3e-61	65.5
WP_012587908.1\|3068396_3069125_-	C40 family peptidase	A0A1V1FD38	Vibrio_phage	5.7e-72	53.6
WP_012587909.1\|3069278_3070004_-\|tail	phage minor tail protein L	A0A1V0E876	Vibrio_phage	3.1e-94	62.9
WP_086014900.1\|3069996_3070656_-	hypothetical protein	A0A1B1ITJ0	uncultured_Mediterranean_phage	4.5e-07	27.8
WP_012587911.1\|3070670_3072920_-	hypothetical protein	A0A1B1ITM8	uncultured_Mediterranean_phage	6.5e-98	33.8
WP_012587912.1\|3072944_3073280_-\|tail	phage tail protein	A0A1V1FDP8	Vibrio_phage	1.0e-31	57.9
WP_012587913.1\|3073279_3076648_-\|tail	phage tail tape measure protein	A0A1V0E821	Vibrio_phage	7.5e-199	46.5
WP_012587914.1\|3076728_3076872_-	hypothetical protein	NA	NA	NA	NA
WP_012587915.1\|3076910_3077405_-\|tail	phage tail assembly chaperone family protein, TAC	A0A1V0E823	Vibrio_phage	5.3e-29	47.6
WP_012587916.1\|3077493_3077967_-\|tail	tail protein	A0A1V0E8B3	Vibrio_phage	6.6e-53	68.6
WP_012587917.1\|3078058_3078427_-	DUF3168 domain-containing protein	A0A1V0E8A7	Vibrio_phage	4.8e-35	57.4
WP_012587918.1\|3078423_3078888_-	HK97 gp10 family phage protein	A0A1V0E895	Vibrio_phage	6.9e-47	59.7
WP_012587919.1\|3078889_3079252_-\|head,tail	head-tail adaptor protein	Q9XJT0	Pseudomonas_phage	1.5e-33	56.3
WP_012587920.1\|3079251_3079548_-\|head,tail	phage gp6-like head-tail connector protein	Q9XJT1	Pseudomonas_phage	4.8e-25	60.4
WP_012587921.1\|3079569_3079869_-	hypothetical protein	NA	NA	NA	NA
WP_012587922.1\|3079965_3081156_-\|capsid	phage major capsid protein	H2BDB0	Pseudomonas_virus	3.2e-128	63.2
WP_012587923.1\|3081168_3082023_-\|protease	Clp protease ClpP	A0A1V0E8B8	Vibrio_phage	2.9e-83	59.7
WP_012587924.1\|3082026_3083331_-\|portal	phage portal protein	A0A0U4IIV7	Pseudomonas_phage	1.8e-137	61.6
WP_012587925.1\|3083327_3083489_-	hypothetical protein	NA	NA	NA	NA
WP_041408510.1\|3083488_3085237_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	2.0e-139	46.3
WP_012587927.1\|3085190_3085703_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	5.3e-40	54.5
WP_012587928.1\|3085711_3086050_-	HNH endonuclease	B5WZZ4	Pseudomonas_phage	1.0e-31	58.1
WP_012587929.1\|3086046_3086415_-	hypothetical protein	NA	NA	NA	NA
WP_012587930.1\|3086407_3086677_-	hypothetical protein	A0A1B1ITN8	uncultured_Mediterranean_phage	4.8e-08	45.5
WP_012587931.1\|3086793_3087318_-	hypothetical protein	NA	NA	NA	NA
WP_012587933.1\|3087567_3088080_-	lysozyme	Q6V7L5	Burkholderia_virus	4.4e-42	53.5
WP_012587934.1\|3088264_3088711_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_012587935.1\|3088770_3090027_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.4e-88	42.8
WP_012587936.1\|3090014_3090443_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1B1ITQ0	uncultured_Mediterranean_phage	7.1e-22	48.6
WP_012587937.1\|3090621_3091206_+	hypothetical protein	NA	NA	NA	NA
WP_006079577.1\|3091475_3092585_-\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_041408512.1\|3092619_3093564_-	hypothetical protein	NA	NA	NA	NA
WP_012587938.1\|3093908_3095144_-\|integrase	tyrosine-type recombinase/integrase	A0A067ZJC5	Vibrio_phage	1.6e-66	36.3
WP_012587939.1\|3095143_3095743_-	hypothetical protein	NA	NA	NA	NA
WP_012587940.1\|3095742_3096312_-	hypothetical protein	NA	NA	NA	NA
WP_012587941.1\|3096308_3096752_-	hypothetical protein	NA	NA	NA	NA
WP_012587942.1\|3096751_3097258_-	hypothetical protein	NA	NA	NA	NA
WP_012587943.1\|3097254_3097635_-	hypothetical protein	NA	NA	NA	NA
WP_012587944.1\|3097618_3098179_-	hypothetical protein	A0A2D1GNB3	Pseudomonas_phage	3.8e-07	29.4
WP_012587945.1\|3098150_3099218_-	replication protein	A0A1I9KG10	Aeromonas_phage	8.8e-53	44.4
WP_012587946.1\|3099291_3099549_-	hypothetical protein	NA	NA	NA	NA
WP_012587947.1\|3099548_3099743_-	hypothetical protein	NA	NA	NA	NA
WP_012587948.1\|3099735_3100314_-	phage regulatory CII family protein	NA	NA	NA	NA
WP_012587949.1\|3100348_3100552_-	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_012587950.1\|3100690_3101422_+	helix-turn-helix transcriptional regulator	W6MVG5	Pseudomonas_phage	4.7e-58	48.5
WP_012587951.1\|3101449_3101872_+	hypothetical protein	NA	NA	NA	NA
WP_012587952.1\|3101897_3102326_+	superinfection immunity protein	A0A0S2SY85	Pseudomonas_phage	8.7e-12	40.7
WP_012587953.1\|3102350_3103253_+	DNA polymerase III subunit epsilon	X2KQX9	Campylobacter_phage	2.5e-16	29.0
WP_012587954.1\|3103377_3104478_+	hypothetical protein	A0A0P0IRH5	Acinetobacter_phage	9.1e-21	26.7
WP_012587955.1\|3104545_3105025_+	hypothetical protein	NA	NA	NA	NA
WP_041408513.1\|3105065_3105737_-\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	5.9e-71	72.5
3109096:3109111	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3512352 : 3596228

Bacillus_phage(21.43%)

tRNA,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086014843.1\|3512352_3513568_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-25	30.9
WP_012588183.1\|3514457_3516329_-	M1 family metallopeptidase	NA	NA	NA	NA
WP_006080906.1\|3517109_3518081_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA
WP_006080905.1\|3518309_3519608_-	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	5.3e-28	33.5
WP_006080904.1\|3519688_3520378_-	phosphate regulon transcriptional regulator PhoB	W8CYM9	Bacillus_phage	1.7e-36	38.5
WP_041408521.1\|3520564_3521509_-	porin	NA	NA	NA	NA
WP_006080902.1\|3521800_3522715_+	recombination-associated protein RdgC	A0A088C419	Shewanella_sp._phage	2.7e-87	58.7
WP_012588186.1\|3522998_3524816_-	M61 family metallopeptidase	NA	NA	NA	NA
WP_012588187.1\|3524950_3527113_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_012588188.1\|3527264_3528821_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.0e-17	36.7
WP_006080898.1\|3528877_3530233_+	LOG family protein	NA	NA	NA	NA
WP_012588189.1\|3530254_3531043_+	flap endonuclease Xni	L7TSA2	Rhizobium_phage	1.8e-15	29.1
WP_012588190.1\|3531153_3531576_+	DUF3192 domain-containing protein	NA	NA	NA	NA
WP_012588191.1\|3531707_3534542_-	S9 family peptidase	NA	NA	NA	NA
WP_006080893.1\|3534796_3535804_+	isocitrate dehydrogenase	NA	NA	NA	NA
WP_011846285.1\|3536068_3537154_-	23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM	NA	NA	NA	NA
WP_006080891.1\|3537332_3537725_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_012588192.1\|3537783_3538428_-	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_006080889.1\|3538408_3539320_-	transcriptional regulator GcvA	NA	NA	NA	NA
WP_006080888.1\|3539531_3539774_+	hypothetical protein	NA	NA	NA	NA
WP_006080887.1\|3539905_3541360_-\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_006080886.1\|3541888_3542821_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_006080885.1\|3542824_3543592_-	flagellar motor protein PomA	NA	NA	NA	NA
WP_012588193.1\|3543906_3544146_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_006085153.1\|3544148_3545030_+	(2E,6E)-farnesyl diphosphate synthase	NA	NA	NA	NA
WP_006080882.1\|3545051_3546920_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_086014843.1\|3547056_3548273_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-25	30.9
WP_006080881.1\|3548401_3549022_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_012588194.1\|3549122_3550001_+	NAD(+) kinase	NA	NA	NA	NA
WP_012588195.1\|3551037_3552681_+	L-lactate permease	NA	NA	NA	NA
WP_012588196.1\|3552745_3555550_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_006080877.1\|3555860_3556604_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_012588197.1\|3556614_3558009_+	lactate utilization protein	NA	NA	NA	NA
WP_006080875.1\|3558010_3558580_+	LUD domain-containing protein	NA	NA	NA	NA
WP_012588198.1\|3559242_3560421_+	AAA family ATPase	A0A1Y0SVM5	Pseudomonas_phage	2.6e-34	29.9
WP_006079577.1\|3560682_3561792_+\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_049768944.1\|3561788_3562346_-	hypothetical protein	A0A141GF23	Brucella_phage	2.2e-07	27.3
WP_006085141.1\|3562832_3564344_-	hypothetical protein	NA	NA	NA	NA
WP_012588199.1\|3564814_3566170_-	MATE family efflux transporter	NA	NA	NA	NA
WP_012588200.1\|3566570_3568112_+	MFS transporter	NA	NA	NA	NA
WP_006085138.1\|3568212_3568737_-	DUF3087 domain-containing protein	NA	NA	NA	NA
WP_012588201.1\|3569137_3569899_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_012588202.1\|3570032_3571139_-	GTP-binding protein	NA	NA	NA	NA
WP_012588203.1\|3571358_3572777_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	9.5e-55	33.2
WP_012588204.1\|3572906_3575954_-	EAL domain-containing protein	G3MA91	Bacillus_virus	3.2e-23	37.5
WP_012588205.1\|3576084_3577704_-	glycogen synthase	NA	NA	NA	NA
WP_012088651.1\|3577888_3579151_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_012588207.1\|3579334_3581866_-	glycogen/starch/alpha-glucan phosphorylase	Q8B3H5	Iris_mild_mosaic_virus	1.4e-16	43.7
WP_012588208.1\|3581877_3584079_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_012588209.1\|3584080_3586312_-	1,4-alpha-glucan branching protein GlgB	NA	NA	NA	NA
WP_012588210.1\|3586426_3588853_-	4-alpha-glucanotransferase	NA	NA	NA	NA
WP_012588211.1\|3589458_3590088_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	3.1e-13	33.7
WP_012587370.1\|3590236_3591559_+\|transposase	IS4-like element ISSba6 family transposase	NA	NA	NA	NA
WP_006080852.1\|3591648_3592125_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_012588212.1\|3592216_3592921_-	membrane protein	NA	NA	NA	NA
WP_006080850.1\|3592935_3594153_-\|holin	choline transporter	NA	NA	NA	NA
WP_006080849.1\|3594542_3596228_-\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	5.6e-46	27.7

DBSCAN-SWA_9

4904065 : 4917802

Bacillus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012588849.1\|4904065_4908955_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	4.3e-70	31.3
WP_006079507.1\|4909313_4910039_+	two-component system response regulator OmpR	W8CYM9	Bacillus_phage	1.7e-31	34.7
WP_012588850.1\|4910081_4911398_+	two-component system sensor histidine kinase EnvZ	W8CYF6	Bacillus_phage	1.9e-09	22.7
WP_012588851.1\|4911527_4913510_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.6e-15	36.9
WP_006079504.1\|4913587_4914061_-	peroxiredoxin	M1I839	Pelagibacter_phage	5.5e-23	47.4
WP_006084639.1\|4914141_4915098_-	choice-of-anchor H family protein	NA	NA	NA	NA
WP_012588852.1\|4915456_4915747_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_006079500.1\|4915749_4916445_+	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	4.0e-06	25.7
WP_012588853.1\|4916437_4917802_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	8.4e-08	23.3

DBSCAN-SWA_10

4950778 : 5023681

Vibrio_phage(28.57%)

integrase,transposase

attL 5022198:5022219|attR 5028049:5028070

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006079577.1\|4950778_4951888_-\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_041408550.1\|4951917_4952922_-	hypothetical protein	NA	NA	NA	NA
WP_012588879.1\|4953926_4954133_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_012588880.1\|4954928_4956299_+	Fic family protein	NA	NA	NA	NA
WP_012588881.1\|4956638_4956953_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012588882.1\|4957052_4957601_+	hypothetical protein	NA	NA	NA	NA
WP_006083112.1\|4959586_4960687_-\|transposase	ISAs1-like element ISSba1 family transposase	NA	NA	NA	NA
WP_041408552.1\|4964600_4965497_+	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_006084679.1\|4965521_4965938_+	hypothetical protein	NA	NA	NA	NA
WP_011979493.1\|4967838_4968762_-\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.3e-148	81.8
WP_012588884.1\|4969141_4970191_-	type I-F CRISPR-associated protein Csy3	A0A2I7RCY7	Vibrio_phage	3.1e-10	22.9
WP_012588885.1\|4970200_4972306_-	hypothetical protein	NA	NA	NA	NA
WP_012588886.1\|4972299_4973532_-	TniQ family protein	NA	NA	NA	NA
WP_012588887.1\|4973807_4975430_+	SAM-dependent DNA methyltransferase	A0A1V0SLK8	Klosneuvirus	7.9e-29	31.6
WP_012588888.1\|4975426_4976632_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_049768957.1\|4976728_4980352_+	DEAD/DEAH box helicase family protein	Q6NDX2	Leptospira_phage	1.8e-12	23.5
WP_150102357.1\|4980517_4981048_+	hypothetical protein	NA	NA	NA	NA
WP_086012318.1\|4981102_4982261_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.1e-48	35.2
WP_041408554.1\|4982463_4986066_+	hypothetical protein	NA	NA	NA	NA
WP_012588890.1\|4986195_4986453_+	hypothetical protein	NA	NA	NA	NA
WP_012588891.1\|4986560_4986845_+	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	5.0e-24	59.3
WP_012588892.1\|4986855_4988061_+	ImmA/IrrE family metallo-endopeptidase	A0A0P0ZCT8	Stx2-converting_phage	2.2e-28	57.4
WP_012588893.1\|4988220_4988532_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_012588894.1\|4988752_4989274_+	hypothetical protein	NA	NA	NA	NA
WP_150102365.1\|4990670_4991633_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_012588897.1\|4991689_4993543_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_012588898.1\|4993539_4994169_-	hypothetical protein	NA	NA	NA	NA
WP_012588899.1\|4994406_4995153_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_012588900.1\|4995419_4997684_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_006079458.1\|4997776_4998622_+	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ	NA	NA	NA	NA
WP_012588901.1\|4999445_5000483_-	DUF3137 domain-containing protein	NA	NA	NA	NA
WP_006079455.1\|5000532_5001099_-	LemA family protein	NA	NA	NA	NA
WP_172481254.1\|5001736_5003293_+	AbgT family transporter	NA	NA	NA	NA
WP_006079453.1\|5003367_5003691_-	hypothetical protein	NA	NA	NA	NA
WP_012588903.1\|5003728_5003992_-	hypothetical protein	NA	NA	NA	NA
WP_012588904.1\|5004125_5007260_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_012090603.1\|5007269_5008415_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011845425.1\|5009312_5010059_+	hypothetical protein	NA	NA	NA	NA
WP_012588905.1\|5010192_5010882_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_006079447.1\|5011089_5011737_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_011845423.1\|5011762_5012293_-	thioesterase family protein	NA	NA	NA	NA
WP_012588906.1\|5012477_5014517_-	oligopeptidase A	NA	NA	NA	NA
WP_012588907.1\|5014785_5015577_+	hypothetical protein	NA	NA	NA	NA
WP_012588908.1\|5015744_5016308_+	hypothetical protein	NA	NA	NA	NA
WP_012588909.1\|5016487_5017846_+	glutathione-disulfide reductase	NA	NA	NA	NA
WP_041408654.1\|5018383_5021932_+	hypothetical protein	NA	NA	NA	NA
5022198:5022219	attL	NA	NA	NA	NA
WP_012588911.1\|5022343_5023681_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012588911.1\|5022343_5023681_+\|integrase	site-specific integrase	NA	NA	NA	NA
5028049:5028070	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NC_011664

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2280 : 74377

Escherichia_phage(16.67%)

integrase,transposase

attL 46638:46653|attR 81443:81458

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011979493.1\|2280_3204_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	1.3e-148	81.8
WP_011979494.1\|3407_4436_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_086012321.1\|4659_5837_-\|transposase	IS3-like element ISSba5 family transposase	Q716C2	Shigella_phage	1.2e-119	65.5
WP_011979497.1\|7507_8380_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.4e-40	37.1
WP_011979498.1\|8516_10472_+	hypothetical protein	NA	NA	NA	NA
WP_011979499.1\|11325_12018_+\|transposase	IS6-like element ISSba18 family transposase	A0A077SL39	Escherichia_phage	4.7e-39	43.7
WP_011979500.1\|12179_13043_+	hypothetical protein	NA	NA	NA	NA
WP_011979501.1\|13276_13885_+	recombinase family protein	A0A1V0E035	Clostridioides_phage	1.2e-09	31.9
WP_011979499.1\|14467_15160_-\|transposase	IS6-like element ISSba18 family transposase	A0A077SL39	Escherichia_phage	4.7e-39	43.7
WP_012198005.1\|15909_16269_-	hypothetical protein	NA	NA	NA	NA
WP_012198006.1\|16261_16948_-	ParA family protein	A0A0A8IL09	Aurantimonas_phage	4.5e-34	42.0
WP_006087334.1\|18332_20990_-	peptidase M66	NA	NA	NA	NA
WP_006087333.1\|21271_21832_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	7.6e-48	83.1
WP_006087332.1\|21835_24868_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_012588976.1\|25320_25923_+	recombinase family protein	A0A0A8WJD4	Clostridium_phage	2.7e-06	28.2
WP_049768959.1\|26331_26979_+	RES domain-containing protein	NA	NA	NA	NA
WP_012588978.1\|27002_27632_-	hypothetical protein	NA	NA	NA	NA
WP_012588979.1\|28211_28886_-	hypothetical protein	NA	NA	NA	NA
WP_012588980.1\|29060_29834_-	hypothetical protein	NA	NA	NA	NA
WP_012588981.1\|30449_31013_-	hypothetical protein	NA	NA	NA	NA
WP_150102367.1\|31090_31900_-	hypothetical protein	NA	NA	NA	NA
WP_012588983.1\|32052_32889_-	hypothetical protein	NA	NA	NA	NA
WP_012588984.1\|33027_33261_-	hypothetical protein	NA	NA	NA	NA
WP_012588985.1\|33405_33780_-	hypothetical protein	NA	NA	NA	NA
WP_012588986.1\|34229_35327_-	chromosome partitioning protein ParB	A0A1B0V750	Salmonella_phage	2.4e-45	39.3
WP_012588987.1\|35326_36526_-	AAA family ATPase	A0A240F4U1	Ochrobactrum_phage	2.6e-21	25.9
WP_190273090.1\|36691_36922_+	hypothetical protein	NA	NA	NA	NA
WP_012197907.1\|37582_38314_-	hypothetical protein	NA	NA	NA	NA
WP_012197906.1\|38760_38943_-	hypothetical protein	NA	NA	NA	NA
WP_012197905.1\|39062_39320_+	hypothetical protein	NA	NA	NA	NA
WP_012588990.1\|39421_39610_+	TraY domain-containing protein	NA	NA	NA	NA
WP_012588991.1\|39673_40048_+	hypothetical protein	NA	NA	NA	NA
WP_012588992.1\|40051_40354_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
WP_012197903.1\|40394_40961_+	type IV conjugative transfer system protein TraE	NA	NA	NA	NA
WP_006087324.1\|40960_41779_+	type-F conjugative transfer system secretin TraK	NA	NA	NA	NA
WP_012197902.1\|41775_43302_+	conjugal transfer protein TraB	NA	NA	NA	NA
WP_190273091.1\|43334_43778_+	type IV conjugative transfer system lipoprotein TraV	NA	NA	NA	NA
WP_012588994.1\|43781_46370_+	type IV secretion system protein TraC	NA	NA	NA	NA
WP_012197899.1\|46371_46743_+	TrbI F-type domain-containing protein	NA	NA	NA	NA
46638:46653	attL	NA	NA	NA	NA
WP_012197898.1\|46739_47444_+	type-F conjugative transfer system protein TraW	NA	NA	NA	NA
WP_012197897.1\|47430_48444_+	conjugal transfer pilus assembly protein TraU	NA	NA	NA	NA
WP_012588995.1\|48466_49207_+	type-F conjugative transfer system pilin assembly protein TrbC	NA	NA	NA	NA
WP_012588996.1\|49203_51006_+	type-F conjugative transfer system mating-pair stabilization protein TraN	NA	NA	NA	NA
WP_012588997.1\|51002_51878_+	type-F conjugative transfer system pilin assembly protein TraF	NA	NA	NA	NA
WP_012197893.1\|51891_52329_+	type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB	NA	NA	NA	NA
WP_012588999.1\|52501_53890_+	conjugal transfer protein TraH	NA	NA	NA	NA
WP_012197891.1\|53892_56706_+	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA
WP_012197888.1\|56743_57277_+	hypothetical protein	NA	NA	NA	NA
WP_012589000.1\|57279_59406_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_012589001.1\|59419_59599_+	hypothetical protein	NA	NA	NA	NA
WP_012589002.1\|59657_65618_+	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_012589003.1\|65638_65998_-	hypothetical protein	NA	NA	NA	NA
WP_012589004.1\|67488_68313_-	hypothetical protein	NA	NA	NA	NA
WP_006079577.1\|69044_70154_-\|transposase	ISAs1-like element ISSba2 family transposase	NA	NA	NA	NA
WP_012589005.1\|71844_72816_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_012589006.1\|73021_74377_-\|integrase	site-specific integrase	A0A221SAN4	Ralstonia_phage	2.3e-18	25.8
81443:81458	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NC_011668

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43178 : 54864

uncultured_Caudovirales_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012592961.1\|43178_45494_-	DEAD/DEAH box helicase family protein	A0A097BY72	Enterococcus_phage	2.6e-25	27.9
WP_005458449.1\|45515_45731_-	helix-turn-helix transcriptional regulator	A0A0E3U244	Fusobacterium_phage	2.4e-10	41.4
WP_012592962.1\|46134_46311_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_012592963.1\|46424_47054_-	recombinase family protein	A0A0A8WJD4	Clostridium_phage	7.3e-07	30.0
WP_011979484.1\|47296_47566_+	hypothetical protein	NA	NA	NA	NA
WP_150102369.1\|47886_48225_-	hypothetical protein	NA	NA	NA	NA
WP_012592966.1\|48329_49004_-	ParA family protein	A0A222YXS3	Escherichia_phage	3.0e-06	24.9
WP_012592968.1\|49440_50061_+	DUF2913 family protein	NA	NA	NA	NA
WP_012592969.1\|50153_50426_+	hypothetical protein	NA	NA	NA	NA
WP_011979491.1\|50805_51048_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	8.4e-20	60.0
WP_011979492.1\|51037_51322_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	6.2e-30	67.0
WP_012592970.1\|51609_54864_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	8.0e-65	25.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011663

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_011664

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NC_011668

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection