CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011959	Thermomicrobium roseum DSM 5159, complete sequence	1 crisprs	cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DEDDh,DinG,WYL,Cas9_archaeal	0	2	0	0
NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	3 crisprs	csx1,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csm3gr7,cas3,csa3	0	4	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011959_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011959_1

31267-36269

Unclear

Consensus_repeat	Method
GTTTCGACAGTACCTATGAGGGCTTGAAAC	PILER-CR
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CRISPRCasFinder
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CRT

75 spacers

cas2,cas1,cas4,cas3,cas5,cas7

The CRISPR arrays of NC_011959_1

>merge|NC_011959|1|31267-36269|PILER-CR,CRISPRCasFinder,CRT
GTTTCGACAGTACCTATGAGGGCTTGAAACCTGTCGGCACGACGTACACCTGCCCGGTATACACCCAGGTTTCGACAGTACCTATGAGGGCTTGAAACCGTGTACGCGTGTCGCAACGGTGAGGGCTGGCGGCATCGAGTTTCGACAGTACCTATGAGGGCTTGAAACAAGCGGTCGATGACTGGAGCGACAGTGGCGGACTCGGTTTCGACAGTACCTATGAGGGCTTGAAACGTGCGACCTGCAACCGACTGATCAGTTCGACCTTGGACTGGTTTCGACAGTACCTATGAGGGCTTGAAACCTAACTGACTAGAACAGACAATCGTGCTTCCAGCTTGTTTCGACAGTACCTATGAGGGCTTGAAACCTTCCTACGAGGTTGAAGACCTCGTGGAAGAGGAGGGTTTCGACAGTACCTATGAGGGCTTGAAACCTCTCCCTGCTGTCCCGCTTCTCGCTGCGCCTGACGTTTCGACAGTACCTATGAGGGCTTGAAACCCAGTTCGCCCAACACGTCCAGAAATCGCTCGTCCGTTTCGACAGTACCTATGAGGGCTTGAAACTTGGGGGTCTCGATGTCAGCACTCATGATGAGATCGTGTTTCGACAGTACCTATGAGGGCTTGAAACCGGAATGTGCGGAACGTATGCGGAGGATTATGGCATGTTTCGACAGTACCTATGAGGGCTTGAAACACGGTACGTCGTTGCCAGCCACCACAACGATCCCATGAGTTTCGACAGTACCTATGAGGGCTTGAAACGAAGCGGAAGTGGAAGCACGACTCGAGCGCAAGGGTGTTTCGACAGTACCTATGAGGGCTTGAAACTGGATACTGACTCGCGGAACCTCAGTGTGGCACATCCGTTTCGACAGTACCTATGAGGGCTTGAAACTCGATCGCGATTACGAATGCACAGGCAGTTCCTCCGGTTTCGACAGTACCTATGAGGGCTTGAAACTTCTCGCCGAGTCAGCTCCACAACGGCGGTAGCTCGAGTTTCGACAGTACCTATGAGGGCTTGAAACAGTCTTCCTGGCTCAGCCCCGCCAGCGACACAACACGTTTCGACAGTACCTATGAGGGCTTGAAACTGTCATGGTATGCTATGGAGCGAAGGAGGATGTGCTGTTTCGACAGTACCTATGAGGGCTTGAAACAGCGCCTGATAGTACTCTGCCAGCAATCCTGCAACTGTTTCGACAGTACCTATGAGGGCTTGAAACATACCAGGACCACTGTAGCCCTTCTGCTTCGCCACGGTTTCGACAGTACCTATGAGGGCTTGAAACCATCAAGGCTGAGGAGGTCGGCTCTGCGCTCGGTCGGTTTCGACAGTACCTATGAGGGCTTGAAACTGACTGCGACCCACAACGGTCTCCTCACGCTGTTCGGTTTCGACAGTACCTATGAGGGCTTGAAACTATGGCCCGAGCTGGACGATCGCTGGTTTCTGCACGTTTCGACAGTACCTATGAGGGCTTGAAACCACAGCATGCAGCGTGGGAATCGAGCGAGGAACGCCGCGTTTCGACAGTACCTATGAGGGCTTGAAACGCTGGCCCGTGCTGCAATCGACCCACGATTTGTCTACGTTTCGACAGTACCTATGAGGGCTTGAAACCAGGCCCTCACACCACCCGTCTACAGCCCTAACCAGTTTCGACAGTACCTATGAGGGCTTGAAACATCTACTACGCTTCGGAAGCCTTACAGCGGCGAGAGTTTCGACAGTACCTATGAGGGCTTGAAACCGAGGCATGAGCACTCTCCCCACGTGGGGCTGACTAGTTTCGACAGTACCTATGAGGGCTTGAAACCGACTCGCTCCTCATAGGGCAAGACGTAGTCGGTATAAGTTTCGACAGGACCTATGAGGGCTTGAAACTCTCCACTGCACGCAACGACGTGAACGCCATTCGCGTTTCGACAGTACCTATGAGGGCTTGAAACTAGGTAGACACCGTTGGCGACCTCGCCGGGCGTCAGCGTTTCGACAGTACCTATGAGGGCTTGAAACACGGGATCGTCACGATACGTTGGTATGACGCATACGCGTTTCGACAGTACCTATGAGGGCTTGAAACTTCGACGCAGCGACGCAATCGCGTCGCTGCCGCTGGGTTTCGACAGTACCTATGAGGGCTTGAAACTGCGAACCAGCACGCCGGCGTAGCCGGGAGGCATGAGTTTCGACAGTACCTATGAGGGCTTGAAACCCGCGATGAGCATCCGCTCGGGCGGTTGCGGGTCGGCGTTTCGACAGTACCTATGAGGGCTTGAAACCTTCGTCGAAGAGAGCCTCCGCATGTACGAGCAGTTTGTTTCGACAGTACCTATGAGGGCTTGAAACAAGCAGCGTGGCGACGCGAAGTCGAAGGCGAGTACGTTTCGACAGTACCTATGAGGGCTTGAAACTTGGTCGTGCGTCGCGTCGCTGGGTGGTGCGGGATCAGGTTTCGACAGTACCTATGAGGGCTTGAAACTCCAGTTTGCGGTCAGCGCCTGCGGCGTGACAGGACGTTTCGACAGTACCTATGAGGGCTTGAAACCGCCTCGTGCAGGATCGCCTCGAAGCGCTGCGCAGTGGTTTCGACAGTACCTATGAGGGCTTGAAACCTGCGCGAACTGGATCGCATCCCAATAGCTCTTACGTTTCGACAGTACCTATGAGGGCTTGAAACCTTCTCGCTGCGCCTGGCGACGAAAGGCACCGACCAGTTTCGACAGTACCTATGAGGGCTTGAAACGCACCCGCAAGGAGCGGCGGAAGCCGCTGAAGAGAAGTTTCGACAGTACCTATGAGGGCTTGAAACCCACGCGCCCCTCGCTATCGCGCACCAGCTCCCCAGTTTCGACAGTACCTATGAGGGCTTGAAACGATGCCCTGAATGCCGGTCTCGAGCATTTGCGTTACGTTTCGACAGTACCTATGAGGGCTTGAAACAACGCGCGCTCGAGGAGAGCGCGAGCCTCGTACCCGTTTCGACAGTACCTATGAGGGCTTGAAACGTTGAGTTGCTCGGACGCCGGAAGCTGCACTGGGTGGTTTCGACAGTACCTATGAGGGCTTGAAACCTTCTCCCTCGGGAGCCAGTGGGTTCTCGACACCGCGTTTCGACAGTACCTATGAGGGCTTGAAACCTGCACGGTGGTCCCTGTCCTGCGCCCACCGTGGGAGTTTCGACAGTACCTATGAGGGCTTGAAACGCGTGCTCTGGAGCTGATCCGGGACCTCCACGATGGTTTCGACAGTACCTATGAGGGCTTGAAACACGGCAGACCAGGAGTCGCAAGCTGCGGGGTTCCTGGGTTTCGACAGTACCTATGAGGGCTTGAAACCGAGGGACGCGAACCAGCGTATTATTTCCGTTGGTGTTTCGACAGTACCTATGAGGGCTTGAAACCCAGATCCAGCAGCTTGTAGGCTGCGTCCGGGTCGAGTTTCGACAGTACCTATGAGGGCTTGAAACGTGTGGTGGACCTTGCCTTCCGCAAGCGTGTGCGGGGTTTCGACAGTACCTATGAGGGCTTGAAACGAAACCCCTGCTGCTCGAAACGCTTGTAGTAGCCGAGTTTCGACAGTACCTATGAGGGCTTGAAACCGTGAACGTTGTAGCTAATCATGGATGAGCCTCCCTGTTTCCACAGTACCTATGAGGGCTTGAAACTTGTGGTACAGTCATGGCTGGTAGGGGTTCGTGATGTTTCGACAGTACCTATGAGGGCTTGAAACTTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACGGTTTCGACAGTACCTATGAGGGCTTGAAACTTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACGGTTTCGACAGTACCTATGAGGGCTTGAAACGCTGCTGACAGCGGCGCAGTGGGATGCACGGGATGCAGGTTTCGACAGTACCTATGAGGGCTTGAAACGCTGGAGGAGACGTTTGAGGTGAACCAGTGGTTGCGTTTCGACAGTACCTATGAGGGCTTGAAACACTATACCTCTTTTTTGCTCATCCCCGCCCTTCCACGTTTCGACAGTACCTATGAGGGCTTGAAACGATCGAGAACGCGCGGATGCTCGAGCAGGTGGGAGCGGTTTCGACAGTACCTATGAGGGCTTGAAACCGAAAGAGCAGACGGAAGGACCAAGCGCAATGGGACGGTTTCGACAGTACCTATGAGGGCTTGAAACTTCGGCGGTGGGTCTGGGTACTGGGTGCGTGGCTGGCAGGTTTCGACAGTACCTATGAGGGCTTGAAACCAGCGCTTCATCATGCTCGCGCTGCAGCCAGTCCAGGGTTTCGACAGTACCTATGAGGGCTTGAGACCTTCCTCCAACATGAGGATCGCCGCGATGCTTAGCGGTTTCGACAGTACCTATGAGGGCTTGAAACCTGCGCGTCTTCGTAGGTCAACATGTAGTCGGTATATGTTTCGACAGTACCTATGAGGGCTTGAAACAGGACGGTGGTCAGCCGCCCTCAGGGCGAGGGAGTGGGTTTCGACAGTACCTATGAGGGCTTGAAACTCACAGGCGATCACCGCCACCTCGATGCCGAGCTGGGTTTCGACAGTACCTATGAGGGCTTGAAACTCGTTCCTCGCGGTACGACCGACGGTACCGGGCCGGGTTTCGACAGTACCTATGAGGGCTTGAAACAGACATGACTCGTACTGCGTACTGCTCCCCTGGGTGCGTTTCGACAGTACCTATGAGGGCTTGAAACCAACGAGGGCGAGCGCGACGCGAGCGACGTCGCGTGGTTTCGACAGTACCTATGAGGGCTTGAAACCGGCGTACGGGGCACGGGTCGCAGCGATCGTCGCGGGTTTCGACAGTACCTATGAGGGCTTGAAACGCAGCTCGGGGCAGATTCACTGCCCAGCTTGCCCGTTTCGACAGTACCTATGAGGGCTTGAAACGGAGTCAGGGGGCCAGGTTCCAGGCCCTAGAGCCCAGTCTCGGCAGCACCTCTGACGGCTTAAAAC

>NC_011959|1|1|31267-36203|PILER-CR
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTGTCGGCACGACGTACACCTGCCCGGTATACACCCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGTGTACGCGTGTCGCAACGGTGAGGGCTGGCGGCATCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AAGCGGTCGATGACTGGAGCGACAGTGGCGGACTCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GTGCGACCTGCAACCGACTGATCAGTTCGACCTTGGACTG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTAACTGACTAGAACAGACAATCGTGCTTCCAGCTT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCCTACGAGGTTGAAGACCTCGTGGAAGAGGAGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTCTCCCTGCTGTCCCGCTTCTCGCTGCGCCTGAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCAGTTCGCCCAACACGTCCAGAAATCGCTCGTCC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTGGGGGTCTCGATGTCAGCACTCATGATGAGATCGT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGGAATGTGCGGAACGTATGCGGAGGATTATGGCAT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACGGTACGTCGTTGCCAGCCACCACAACGATCCCATGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GAAGCGGAAGTGGAAGCACGACTCGAGCGCAAGGGT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGGATACTGACTCGCGGAACCTCAGTGTGGCACATCC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TCGATCGCGATTACGAATGCACAGGCAGTTCCTCCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTCTCGCCGAGTCAGCTCCACAACGGCGGTAGCTCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AGTCTTCCTGGCTCAGCCCCGCCAGCGACACAACAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGTCATGGTATGCTATGGAGCGAAGGAGGATGTGCT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AGCGCCTGATAGTACTCTGCCAGCAATCCTGCAACT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ATACCAGGACCACTGTAGCCCTTCTGCTTCGCCACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CATCAAGGCTGAGGAGGTCGGCTCTGCGCTCGGTCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGACTGCGACCCACAACGGTCTCCTCACGCTGTTCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TATGGCCCGAGCTGGACGATCGCTGGTTTCTGCAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CACAGCATGCAGCGTGGGAATCGAGCGAGGAACGCCGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCTGGCCCGTGCTGCAATCGACCCACGATTTGTCTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CAGGCCCTCACACCACCCGTCTACAGCCCTAACCA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ATCTACTACGCTTCGGAAGCCTTACAGCGGCGAGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGAGGCATGAGCACTCTCCCCACGTGGGGCTGACTA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGACTCGCTCCTCATAGGGCAAGACGTAGTCGGTATAA
GTTTCGACAGGACCTATGAGGGCTTGAAAC	TCTCCACTGCACGCAACGACGTGAACGCCATTCGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TAGGTAGACACCGTTGGCGACCTCGCCGGGCGTCAGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACGGGATCGTCACGATACGTTGGTATGACGCATACGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTCGACGCAGCGACGCAATCGCGTCGCTGCCGCTGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGCGAACCAGCACGCCGGCGTAGCCGGGAGGCATGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCGCGATGAGCATCCGCTCGGGCGGTTGCGGGTCGGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCGTCGAAGAGAGCCTCCGCATGTACGAGCAGTTT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AAGCAGCGTGGCGACGCGAAGTCGAAGGCGAGTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTGGTCGTGCGTCGCGTCGCTGGGTGGTGCGGGATCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TCCAGTTTGCGGTCAGCGCCTGCGGCGTGACAGGAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGCCTCGTGCAGGATCGCCTCGAAGCGCTGCGCAGTG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTGCGCGAACTGGATCGCATCCCAATAGCTCTTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCTCGCTGCGCCTGGCGACGAAAGGCACCGACCA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCACCCGCAAGGAGCGGCGGAAGCCGCTGAAGAGAA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCACGCGCCCCTCGCTATCGCGCACCAGCTCCCCA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GATGCCCTGAATGCCGGTCTCGAGCATTTGCGTTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AACGCGCGCTCGAGGAGAGCGCGAGCCTCGTACCC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GTTGAGTTGCTCGGACGCCGGAAGCTGCACTGGGTG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCTCCCTCGGGAGCCAGTGGGTTCTCGACACCGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTGCACGGTGGTCCCTGTCCTGCGCCCACCGTGGGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCGTGCTCTGGAGCTGATCCGGGACCTCCACGATG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACGGCAGACCAGGAGTCGCAAGCTGCGGGGTTCCTGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGAGGGACGCGAACCAGCGTATTATTTCCGTTGGT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCAGATCCAGCAGCTTGTAGGCTGCGTCCGGGTCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GTGTGGTGGACCTTGCCTTCCGCAAGCGTGTGCGGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GAAACCCCTGCTGCTCGAAACGCTTGTAGTAGCCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGTGAACGTTGTAGCTAATCATGGATGAGCCTCCCT
GTTTCCACAGTACCTATGAGGGCTTGAAAC	TTGTGGTACAGTCATGGCTGGTAGGGGTTCGTGAT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCTGCTGACAGCGGCGCAGTGGGATGCACGGGATGCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCTGGAGGAGACGTTTGAGGTGAACCAGTGGTTGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACTATACCTCTTTTTTGCTCATCCCCGCCCTTCCAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GATCGAGAACGCGCGGATGCTCGAGCAGGTGGGAGCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGAAAGAGCAGACGGAAGGACCAAGCGCAATGGGACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTCGGCGGTGGGTCTGGGTACTGGGTGCGTGGCTGGCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CAGCGCTTCATCATGCTCGCGCTGCAGCCAGTCCAGG
GTTTCGACAGTACCTATGAGGGCTTGAGAC	CTTCCTCCAACATGAGGATCGCCGCGATGCTTAGCGGTT
TCGACAGTACCTATGAGGGCTTGAAACCTG	CGCGTCTTCGTAGGTCAACATGTAGTCGGTATATGTT
TCGACAGTACCTATGAGGGCTTGAAACAGG	ACGGTGGTCAGCCGCCCTCAGGGCGAGGGAGTGGGTT
TCGACAGTACCTATGAGGGCTTGAAACTCA	CAGGCGATCACCGCCACCTCGATGCCGAGCTGGGTT
TCGACAGTACCTATGAGGGCTTGAAACTCG	TTCCTCGCGGTACGACCGACGGTACCGGGCCGGGTT
TCGACAGTACCTATGAGGGCTTGAAACAGA	CATGACTCGTACTGCGTACTGCTCCCCTGGGTGCGTT
TCGACAGTACCTATGAGGGCTTGAAACCAA	CGAGGGCGAGCGCGACGCGAGCGACGTCGCGTGGTT
TCGACAGTACCTATGAGGGCTTGAAACCGG	CGTACGGGGCACGGGTCGCAGCGATCGTCGCGGGTT
TCGACAGTACCTATGAGGGCTTGAAACGCA	GCTCGGGGCAGATTCACTGCCCAGCTTGCCCGTT
TCGACAGTACCTATGAGGGCTTGAAAC

>NC_011959|1|1|31267-36269|CRISPRCasFinder
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTGTCGGCACGACGTACACCTGCCCGGTATACACCCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGTGTACGCGTGTCGCAACGGTGAGGGCTGGCGGCATCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AAGCGGTCGATGACTGGAGCGACAGTGGCGGACTCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GTGCGACCTGCAACCGACTGATCAGTTCGACCTTGGACTG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTAACTGACTAGAACAGACAATCGTGCTTCCAGCTT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCCTACGAGGTTGAAGACCTCGTGGAAGAGGAGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTCTCCCTGCTGTCCCGCTTCTCGCTGCGCCTGAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCAGTTCGCCCAACACGTCCAGAAATCGCTCGTCC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTGGGGGTCTCGATGTCAGCACTCATGATGAGATCGT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGGAATGTGCGGAACGTATGCGGAGGATTATGGCAT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACGGTACGTCGTTGCCAGCCACCACAACGATCCCATGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GAAGCGGAAGTGGAAGCACGACTCGAGCGCAAGGGT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGGATACTGACTCGCGGAACCTCAGTGTGGCACATCC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TCGATCGCGATTACGAATGCACAGGCAGTTCCTCCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTCTCGCCGAGTCAGCTCCACAACGGCGGTAGCTCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AGTCTTCCTGGCTCAGCCCCGCCAGCGACACAACAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGTCATGGTATGCTATGGAGCGAAGGAGGATGTGCT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AGCGCCTGATAGTACTCTGCCAGCAATCCTGCAACT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ATACCAGGACCACTGTAGCCCTTCTGCTTCGCCACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CATCAAGGCTGAGGAGGTCGGCTCTGCGCTCGGTCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGACTGCGACCCACAACGGTCTCCTCACGCTGTTCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TATGGCCCGAGCTGGACGATCGCTGGTTTCTGCAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CACAGCATGCAGCGTGGGAATCGAGCGAGGAACGCCGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCTGGCCCGTGCTGCAATCGACCCACGATTTGTCTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CAGGCCCTCACACCACCCGTCTACAGCCCTAACCA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ATCTACTACGCTTCGGAAGCCTTACAGCGGCGAGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGAGGCATGAGCACTCTCCCCACGTGGGGCTGACTA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGACTCGCTCCTCATAGGGCAAGACGTAGTCGGTATAA
GTTTCGACAGGACCTATGAGGGCTTGAAAC	TCTCCACTGCACGCAACGACGTGAACGCCATTCGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TAGGTAGACACCGTTGGCGACCTCGCCGGGCGTCAGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACGGGATCGTCACGATACGTTGGTATGACGCATACGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTCGACGCAGCGACGCAATCGCGTCGCTGCCGCTGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGCGAACCAGCACGCCGGCGTAGCCGGGAGGCATGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCGCGATGAGCATCCGCTCGGGCGGTTGCGGGTCGGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCGTCGAAGAGAGCCTCCGCATGTACGAGCAGTTT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AAGCAGCGTGGCGACGCGAAGTCGAAGGCGAGTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTGGTCGTGCGTCGCGTCGCTGGGTGGTGCGGGATCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TCCAGTTTGCGGTCAGCGCCTGCGGCGTGACAGGAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGCCTCGTGCAGGATCGCCTCGAAGCGCTGCGCAGTG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTGCGCGAACTGGATCGCATCCCAATAGCTCTTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCTCGCTGCGCCTGGCGACGAAAGGCACCGACCA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCACCCGCAAGGAGCGGCGGAAGCCGCTGAAGAGAA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCACGCGCCCCTCGCTATCGCGCACCAGCTCCCCA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GATGCCCTGAATGCCGGTCTCGAGCATTTGCGTTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AACGCGCGCTCGAGGAGAGCGCGAGCCTCGTACCC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GTTGAGTTGCTCGGACGCCGGAAGCTGCACTGGGTG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCTCCCTCGGGAGCCAGTGGGTTCTCGACACCGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTGCACGGTGGTCCCTGTCCTGCGCCCACCGTGGGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCGTGCTCTGGAGCTGATCCGGGACCTCCACGATG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACGGCAGACCAGGAGTCGCAAGCTGCGGGGTTCCTGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGAGGGACGCGAACCAGCGTATTATTTCCGTTGGT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCAGATCCAGCAGCTTGTAGGCTGCGTCCGGGTCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GTGTGGTGGACCTTGCCTTCCGCAAGCGTGTGCGGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GAAACCCCTGCTGCTCGAAACGCTTGTAGTAGCCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGTGAACGTTGTAGCTAATCATGGATGAGCCTCCCT
GTTTCCACAGTACCTATGAGGGCTTGAAAC	TTGTGGTACAGTCATGGCTGGTAGGGGTTCGTGAT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCTGCTGACAGCGGCGCAGTGGGATGCACGGGATGCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCTGGAGGAGACGTTTGAGGTGAACCAGTGGTTGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACTATACCTCTTTTTTGCTCATCCCCGCCCTTCCAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GATCGAGAACGCGCGGATGCTCGAGCAGGTGGGAGCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGAAAGAGCAGACGGAAGGACCAAGCGCAATGGGACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTCGGCGGTGGGTCTGGGTACTGGGTGCGTGGCTGGCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CAGCGCTTCATCATGCTCGCGCTGCAGCCAGTCCAGG
GTTTCGACAGTACCTATGAGGGCTTGAGAC	CTTCCTCCAACATGAGGATCGCCGCGATGCTTAGCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTGCGCGTCTTCGTAGGTCAACATGTAGTCGGTATAT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AGGACGGTGGTCAGCCGCCCTCAGGGCGAGGGAGTGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TCACAGGCGATCACCGCCACCTCGATGCCGAGCTGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TCGTTCCTCGCGGTACGACCGACGGTACCGGGCCGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AGACATGACTCGTACTGCGTACTGCTCCCCTGGGTGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CAACGAGGGCGAGCGCGACGCGAGCGACGTCGCGTG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGGCGTACGGGGCACGGGTCGCAGCGATCGTCGCGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCAGCTCGGGGCAGATTCACTGCCCAGCTTGCCC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GGAGTCAGGGGGCCAGGTTCCAGGCCCTAGAGCCCA
GTCTCGGCAGCACCTCTGACGGCTTAAAAC

>NC_011959|1|1|31267-36269|CRT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTGTCGGCACGACGTACACCTGCCCGGTATACACCCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGTGTACGCGTGTCGCAACGGTGAGGGCTGGCGGCATCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AAGCGGTCGATGACTGGAGCGACAGTGGCGGACTCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GTGCGACCTGCAACCGACTGATCAGTTCGACCTTGGACTG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTAACTGACTAGAACAGACAATCGTGCTTCCAGCTT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCCTACGAGGTTGAAGACCTCGTGGAAGAGGAGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTCTCCCTGCTGTCCCGCTTCTCGCTGCGCCTGAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCAGTTCGCCCAACACGTCCAGAAATCGCTCGTCC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTGGGGGTCTCGATGTCAGCACTCATGATGAGATCGT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGGAATGTGCGGAACGTATGCGGAGGATTATGGCAT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACGGTACGTCGTTGCCAGCCACCACAACGATCCCATGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GAAGCGGAAGTGGAAGCACGACTCGAGCGCAAGGGT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGGATACTGACTCGCGGAACCTCAGTGTGGCACATCC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TCGATCGCGATTACGAATGCACAGGCAGTTCCTCCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTCTCGCCGAGTCAGCTCCACAACGGCGGTAGCTCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AGTCTTCCTGGCTCAGCCCCGCCAGCGACACAACAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGTCATGGTATGCTATGGAGCGAAGGAGGATGTGCT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AGCGCCTGATAGTACTCTGCCAGCAATCCTGCAACT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ATACCAGGACCACTGTAGCCCTTCTGCTTCGCCACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CATCAAGGCTGAGGAGGTCGGCTCTGCGCTCGGTCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGACTGCGACCCACAACGGTCTCCTCACGCTGTTCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TATGGCCCGAGCTGGACGATCGCTGGTTTCTGCAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CACAGCATGCAGCGTGGGAATCGAGCGAGGAACGCCGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCTGGCCCGTGCTGCAATCGACCCACGATTTGTCTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CAGGCCCTCACACCACCCGTCTACAGCCCTAACCA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ATCTACTACGCTTCGGAAGCCTTACAGCGGCGAGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGAGGCATGAGCACTCTCCCCACGTGGGGCTGACTA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGACTCGCTCCTCATAGGGCAAGACGTAGTCGGTATAA
GTTTCGACAGGACCTATGAGGGCTTGAAAC	TCTCCACTGCACGCAACGACGTGAACGCCATTCGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TAGGTAGACACCGTTGGCGACCTCGCCGGGCGTCAGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACGGGATCGTCACGATACGTTGGTATGACGCATACGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTCGACGCAGCGACGCAATCGCGTCGCTGCCGCTGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TGCGAACCAGCACGCCGGCGTAGCCGGGAGGCATGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCGCGATGAGCATCCGCTCGGGCGGTTGCGGGTCGGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCGTCGAAGAGAGCCTCCGCATGTACGAGCAGTTT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AAGCAGCGTGGCGACGCGAAGTCGAAGGCGAGTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTGGTCGTGCGTCGCGTCGCTGGGTGGTGCGGGATCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TCCAGTTTGCGGTCAGCGCCTGCGGCGTGACAGGAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGCCTCGTGCAGGATCGCCTCGAAGCGCTGCGCAGTG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTGCGCGAACTGGATCGCATCCCAATAGCTCTTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCTCGCTGCGCCTGGCGACGAAAGGCACCGACCA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCACCCGCAAGGAGCGGCGGAAGCCGCTGAAGAGAA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCACGCGCCCCTCGCTATCGCGCACCAGCTCCCCA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GATGCCCTGAATGCCGGTCTCGAGCATTTGCGTTAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AACGCGCGCTCGAGGAGAGCGCGAGCCTCGTACCC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GTTGAGTTGCTCGGACGCCGGAAGCTGCACTGGGTG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTTCTCCCTCGGGAGCCAGTGGGTTCTCGACACCGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTGCACGGTGGTCCCTGTCCTGCGCCCACCGTGGGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCGTGCTCTGGAGCTGATCCGGGACCTCCACGATG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACGGCAGACCAGGAGTCGCAAGCTGCGGGGTTCCTGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGAGGGACGCGAACCAGCGTATTATTTCCGTTGGT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CCAGATCCAGCAGCTTGTAGGCTGCGTCCGGGTCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GTGTGGTGGACCTTGCCTTCCGCAAGCGTGTGCGGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GAAACCCCTGCTGCTCGAAACGCTTGTAGTAGCCGA
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGTGAACGTTGTAGCTAATCATGGATGAGCCTCCCT
GTTTCCACAGTACCTATGAGGGCTTGAAAC	TTGTGGTACAGTCATGGCTGGTAGGGGTTCGTGAT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTTGCCGTCCATGTCGTTGGCTGCAGACGGCAGACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCTGCTGACAGCGGCGCAGTGGGATGCACGGGATGCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCTGGAGGAGACGTTTGAGGTGAACCAGTGGTTGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	ACTATACCTCTTTTTTGCTCATCCCCGCCCTTCCAC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GATCGAGAACGCGCGGATGCTCGAGCAGGTGGGAGCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGAAAGAGCAGACGGAAGGACCAAGCGCAATGGGACG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TTCGGCGGTGGGTCTGGGTACTGGGTGCGTGGCTGGCAG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CAGCGCTTCATCATGCTCGCGCTGCAGCCAGTCCAGG
GTTTCGACAGTACCTATGAGGGCTTGAGAC	CTTCCTCCAACATGAGGATCGCCGCGATGCTTAGCG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CTGCGCGTCTTCGTAGGTCAACATGTAGTCGGTATAT
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AGGACGGTGGTCAGCCGCCCTCAGGGCGAGGGAGTGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TCACAGGCGATCACCGCCACCTCGATGCCGAGCTGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	TCGTTCCTCGCGGTACGACCGACGGTACCGGGCCGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	AGACATGACTCGTACTGCGTACTGCTCCCCTGGGTGC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CAACGAGGGCGAGCGCGACGCGAGCGACGTCGCGTG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	CGGCGTACGGGGCACGGGTCGCAGCGATCGTCGCGG
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GCAGCTCGGGGCAGATTCACTGCCCAGCTTGCCC
GTTTCGACAGTACCTATGAGGGCTTGAAAC	GGAGTCAGGGGGCCAGGTTCCAGGCCCTAGAGCCCA
GTCTCGGCAGCACCTCTGACGGCTTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011959.1\|WP_012641446.1\|38387_39326_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NC_011959.1\|WP_143714576.1\|42581_42833_+\|hypothetical-protein	unknown	unknown	unknown
NC_011959.1\|WP_012641454.1\|44930_45467_+\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NC_011959.1\|WP_012641449.1\|41174_42314_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366009
NC_011959.1\|WP_041435779.1\|28232_29735_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_011959.1\|WP_012641436.1\|23487_24075_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NC_011959.1\|WP_012641438.1\|25125_25389_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NC_011959.1\|WP_012641448.1\|40636_41188_+\|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl\|CDD\|319741
NC_011959.1\|WP_012641435.1\|21151_23473_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|273707
NC_011959.1\|WP_012641453.1\|43717_44929_+\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173847
NC_011959.1\|WP_012641440.1\|26684_27293_-\|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT	unknown	unknown	gnl\|CDD\|153220
NC_011959.1\|WP_012641441.1\|27303_28206_-\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	unknown	unknown	gnl\|CDD\|179769
NC_011959.1\|WP_012641437.1\|24071_25061_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NC_011959.1\|WP_081433354.1\|36949_38383_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|224128
NC_011959.1\|WP_012641434.1\|20454_21162_+\|CRISPR-associated-protein-Cas5	cas5	cd09693_cas5_CAS-I	gnl\|CDD\|273860
NC_011959.1\|WP_012641455.1\|45463_46237_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|180270
NC_011959.1\|WP_012641439.1\|25385_26456_-\|AIR-synthase-family-protein	unknown	unknown	gnl\|CDD\|100037
NC_011959.1\|WP_143714577.1\|43070_43439_+\|hypothetical-protein	unknown	unknown	unknown
NC_011959.1\|WP_012641433.1\|19364_20432_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NC_011959.1\|WP_012641447.1\|39367_40630_+\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173

Protein	Function_ID	Function_description	E-value
NC_011959.1\|WP_012641446.1\|38387_39326_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	4.6452e-170
NC_011959.1\|WP_012641454.1\|44930_45467_+\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	8.58063e-69
NC_011959.1\|WP_012641449.1\|41174_42314_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	7.99457e-48
NC_011959.1\|WP_041435779.1\|28232_29735_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.78254e-153
NC_011959.1\|WP_012641436.1\|23487_24075_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	9.90815e-58
NC_011959.1\|WP_012641438.1\|25125_25389_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.11184e-28
NC_011959.1\|WP_012641448.1\|40636_41188_+\|biotin--[acetyl-CoA-carboxylase]-ligase	gnl\|CDD\|319741	cd16442, BPL, biotin protein ligase. Biotin protein ligase (EC 6.3.4.15) catalyzes the synthesis of an activated form of biotin, biotinyl-5'-AMP, from substrates biotin and ATP followed by biotinylation of the biotin carboxyl carrier protein subunit of acetyl-CoA carboxylase. Biotin protein ligase (BPL) is the enzyme responsible for attaching biotin to a specific lysine at the active site of biotin enzymes. Biotin attachment is a two step reaction that results in the formation of an amide linkage between the carboxyl group of biotin and the epsilon-amino group of the modified lysine.	7.95227e-53
NC_011959.1\|WP_012641435.1\|21151_23473_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|273707	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.	2.92803e-70
NC_011959.1\|WP_012641453.1\|43717_44929_+\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	2.14641e-156
NC_011959.1\|WP_012641440.1\|26684_27293_-\|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT	gnl\|CDD\|153220	cd01749, GATase1_PB, Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.	4.34619e-99
NC_011959.1\|WP_012641441.1\|27303_28206_-\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	gnl\|CDD\|179769	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS.	0
NC_011959.1\|WP_012641437.1\|24071_25061_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	5.22553e-171
NC_011959.1\|WP_081433354.1\|36949_38383_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|224128	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane].	9.95336e-168
NC_011959.1\|WP_012641434.1\|20454_21162_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.39376e-26
NC_011959.1\|WP_012641439.1\|25385_26456_-\|AIR-synthase-family-protein	gnl\|CDD\|100037	cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.	2.28016e-114
NC_011959.1\|WP_012641455.1\|45463_46237_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|180270	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase.	6.89199e-109
NC_011959.1\|WP_012641433.1\|19364_20432_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	7.5693e-48
NC_011959.1\|WP_012641447.1\|39367_40630_+\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	3.54309e-80

>NC_011959.1|WP_041435779.1|28232_29735_-|PLP-dependent-aminotransferase-family-protein
MQLRLDRTSRVPLYRQLAEQLRRRILSGELPPGTRLPPERRLAATLGINRSTVVSAYRELAAAGLISGHVGRGTVVVDPAQHRESRAPAGGVPWPQLFAPLATALYDPALEDAMIAAARPDVISFATGQPAPECYPIATVRQLLDEALHREGARLLQYCPSEGYPPLREAIASWSQQAGIRCTAENVLVVSGSQQGLYLVARALVEPGDLVAVESPTYAGALQIFRAVGARLLPIPVDEFGMRVSLLERALEHRRPKLIYTLPTFQNPSGATLALDRRLHLLDLAARAGIPVVEDDPYRELWYDAPPPPPLAALDQAGTVISLTTVSKILFPGFRIGWIIAPWPVIRQLALVKQLVDLDTNPLMQWAIWAFLERRLLPPHLEELRRVHRDRRDLLLASLAAEANGALHCRVPAGGLYLWCELADGIRARDLVPEAARQGVAIVPGESFFVDPAQGRSFVRLNFTYPAPAALVEGAKRLGRALSALREARALLAQASSPIV
>NC_011959.1|WP_012641441.1|27303_28206_-|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS
MEQTNGTIEQATWRTKVGLAQMLKGGVIMDVVTPEQAQIAEEAGAVAVMALERVPADIRREGGVARMADPDRILRIKEAVTIPVMAKVRIGHFVEAQILEAIGVDFIDESEVLTPADDRYHIDKHVFRVPFVCGARDLGEALRRIAEGAAMIRSKGEAGTGNIVEAVRHLRDILDGIRRLAALPREELVTAAKELGAPYELVRQVAEQGRLPVVLFCAGGVATPADAALVMQLGAEGVFVGSGIFKSENPFARAKAIVEAVTHYRDPEVLARVSRGLGEAMPGIDLATLAPEQRLAPRGW
>NC_011959.1|WP_012641440.1|26684_27293_-|pyridoxal-5'-phosphate-synthase-glutaminase-subunit-PdxT
MAVTIGVLALQGDFAEHLTALARLGIAAHEVRQPRDLAGIDGLIIPGGESTTIGRLLERTELLGVIRDLAQRGMPLWGTCAGLILLAREVTAETRARHQPLLGLLDIVVRRNAFGSQRESFECDLVVEPLGPPPLRAVFIRAPLIDAIGPGVAVLACLPDGRPVAVRQGSIIGTAFHPELTNDLRFHRWFCELAERATVHTV
>NC_011959.1|WP_012641439.1|25385_26456_-|AIR-synthase-family-protein
MGLELPTLGKISGEVFDQIILPHLGAPSPQVLVPPQHGVDVGIVDLGNGLVMAVTTDPVFVVPAYGWERAAWFAIHILASDAATSGLAPAFLAIDLNLPLAITAEELSILWTTMHRVCAELGIAIIAGHTARYEGCHYPMVGGAAVMAIGPADRYVTPKMARVGDLVVVTKGAAIEAAGLFAVSFPERIAAAYGREFADRAQELFWQMSVVADALTAVSIGVRDDGVTAMHDATECGVYGGLVEVAEASGVGLRIEQERIILREDVAKICQLFGMDPYAAISEGTLIITVRPHKVDALLAALGAKGIAASVVGEVVPPERGLTLVVDGKERPLEHPRVDPFWAAFGRAMAEAERGS
>NC_011959.1|WP_012641438.1|25125_25389_+|CRISPR-associated-endonuclease-Cas2
MYVIVAYDVGVERVARVLKICRRYLTWVQNSLLEGELTPAQLRRLQQELERTIDRENDSVQFYILPQASVAKRVTLGLVKNQPSQVI
>NC_011959.1|WP_012641437.1|24071_25061_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MTKPIYVFSSGRLARHQNTIVLETEEGKRFLPVEQVSELYVFGEVDLNKRFLEFIAREGVLLHFFNRYGFYTGTFYPREYLSSGALILRQVEHYLDQAKRLTLARAFVHGALRNIRTVLLYYRRRGVDVQAAVEIIERARAGIEEAGTTAELMALEGQAREAYYAVWPAIIEAEFPFGPRTRRPPRDETNALISFGNSLLYTAVLAQIYQTHLDPRIGYLHETNFRRHTLNLDVAEIFKPVLVDRLIFRLVNRGQLQRRHFVTGAEGVFLDDDGRKLVVEAWEQTLQETYRHPSLNRSVSYRTTLRLELYKLEKHLLGEQAYVPFALRG
>NC_011959.1|WP_012641436.1|23487_24075_+|CRISPR-associated-protein-Cas4
MDQIVTGTLMSYVGICDRKIWLAGHAIEGYRDHELLALGRLLAESAYPRERKELALPGMKVDVLRRRPADADEDEALVIGEVKRSPRAQHAQRLQLGYYLLRLREAGLHVRGELRYPEQRRVEPVELTPELEQAVRSAIARVEELLAQPQPPPPVRIAACANCAYFEFCWVSEEPATADSPRRRTRSAASADGKR
>NC_011959.1|WP_012641435.1|21151_23473_+|CRISPR-associated-helicase/endonuclease-Cas3
MVGEPLAKSGDPPITLRQHTLEVLAYVEQVIPAYRALWSRVLDSRSVDHLGRALPLAAAGHDLGKAALGFQRSLQERGFRWEFRHEVLSAALLLASGHATGDPGQLAIAAVLTHHRDLTEERLWRDCGVPQLPRPQFLEKAQRQFRERAAELGPFWEWIVRFSQEVEVLRTDQWPCSPHDLEPPAEFLRSLQERADRLHAFRSAEGLLLTLSRGWLLAADHAASAGIPRFVSTIPTEWRARHAERLAHSRAQGDGQLRAFQRALGEYEGSALLIAPTGAGKTDAAIRWIARNRIGGERIFYILPYQASIEAMGQTLERLFGRETVGTLHARTLEVAFQRYFSGDDYEEAYQAARQDAELNRLVHKPIKVTTPFQLIKWLFGLPRFEVGLAEMVGALVIFDEIHAYDAHVTALILELVRVLRELGARCLFMSATFPDFLRQYIEDAYAQPLRLFRLDQPPAHDTWAERFLAQARHRVEWTADPLEELVDLVVEAAQNGERVLVVANRVQQAQALYQRLVECVPDGLQLLHARLMRRDRVAREQRILAALRGESPEPVRVLVATQVVEVSLDISFDRLVTEVAPVDDLLQRFGRVNRYYEHNSPRPIVISRTYGDALYYVYDRERLERTLEEAPPHGHALDAFDAEQWVERVYREGWTTNEGRRFEQALASFRAVIEGLRPLQHADMAYEDFYRLFQGAEVLPSPFQEEYLRYQIEGKHLLAQQLLVPVPYGTFWKLHRAGRISQLKDGTLVASVQYDPDLGLLPEVADLDAVIV
>NC_011959.1|WP_012641434.1|20454_21162_+|CRISPR-associated-protein-Cas5
MLDGAVRIRLTALTASFRAPSFVAYQLSLAVPPLATIFGLLSAARGHWVMPHEVPWLAYRLTYAARAMDLEAIYSVERKDAADTPRFKERNIVQREFLVSPELDLFLPAEWRDPFLRPRYQLVLGRSQDLATVSSIGPASLEPVSTGPVTGVLLPAEVVARNGVTAVLQNLPVAFTPDPERAPVRVTMFGLIDGKRSTRGLQFVTIEDGAGWLVRDRESGVVVPLYRQEWILDGR
>NC_011959.1|WP_012641433.1|19364_20432_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MAGRATYPVVTGTVLIEASGAALNNAGQDEGRRTDNAIVVKQLQIGRLRYPYVSGQAWRRWWREVLYTDFGWTPSPVTREAKSAYTEGNPIDYAEDDLFGYMAARKRGKDSDTYRRVSPLRASLLVSVLPNVIVSDFGHFSRNLPPGSDIIPFESEVYSTYLQGVFSIVLSEVGRFAVGAMADISAELAQKNGSRLRKAAVNPNQAEIYELPVRDRVQRVCEALQALARLRGGARLARNLSDVTPVAVIVGFLDGGNAPFQNLFVSDPVNAEQVLLNLERFRSVLSDYTDRFLKVNNDKAVLLGLRPTVLANENEVREVIARKERPFDRVELLDSPRRALERAAELVEQAYASIG
>NC_011959.1|WP_081433354.1|36949_38383_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MPDRSATVDEKSDSIQTRPAESLAAVVLAGGLGTRMRSRLPKEFHPLAGRPLLRYVLDAVEALPVAQRILVTSPAKAALCSQLGADWEIALQEEPLGTGHALGCALPLLRPDIRWVLLVFGDHPLLRGEDLARLLSAALQQRPLAAVLTTLLPDPAAYGRIQRDPDGRVTGVIEAREDANHYAGPVEVVSGATIYWRAWLEDALPRLPRSPSGEYYHTALIGLAAAERSGEAVITVVAPPETALGVNDRVDLARAEAILRDRIVQAHQRAGVTIVDPATTWIEPTVEIEPDARIEPFTILAGRTRIAQGARIGPHAVVHDSVVGPDSTVVASVLESAVLGARVRVGPYSHLRPGTIVEDDVHIGNFAELKNAHVGRATRIGHVSYIGDAELGERVNIGAGTVTCNFDGVAKHRTVIEDEAFIGSDTMLVAPVQVGRGARTGAGSVVTKDVAPGTTVVGVPARPVGARRQRRTGETGA
>NC_011959.1|WP_012641446.1|38387_39326_+|ribose-phosphate-pyrophosphokinase
MDGRLQIFAGNSNPRLAQAIVGVLETPLGRAEVSSWSDGETRVRLEENVRGSDVFVIQSLCTPVNQNIMELLIILDAVKRASAARITAVIPYYAYARQEKKTAGREPISAKLLANLLTTAGADRVLTIDLHAPAIEGFFDIPVDHLRATPILAAHFRRLGLTDFVVVSPDAGAVVRADEFRRRAGGSLAIISKKRPGPEVAEVLEMVGDVAGRDAVIVDDIIATGGTLLQAAELLRERGARRIFAAAVHGVFAGQALERIQASPIEKVFVTDTIPLPEGMCTDKVEVLTVAPLLAEAIMRIHKDLSISALFT
>NC_011959.1|WP_012641447.1|39367_40630_+|HlyC/CorC-family-transporter
MSSPWTEAILFVVLAALFFAAALADLASCLPARRSLREFLAELAETQNGNGENTLEQLRVARPAIRLVQATTFLGLTVLALRIGHRWWPKHELAVAVLIAFVALLVLASAAPMALLERRYPLTSARFRLLAGLLSRLGAPLRVLSELLERPLAALIPPAPAPAVPSAAAPPAHEEVVEEAEELIERVLRLDRLTARDIMVPRTDIVAVPFELSVRDAIAVARQTRHSRLPVYQGTIDRIVGIVHVRDLLRFALESAEGIKVGDVMREAYFIPESKRVDELLRDLQHQRVHMAIVVDEFGGTAGIVTIEDVLEEIVGEIQDEYDAEAPLVERLSADEAIVDGRISLEEIADIFGVSLEEEESSTIGGLVQAHLGRIPQPGESVRVDGLEVTVLEVAGNRVRKLSVRRVAASVSASDEDERS
>NC_011959.1|WP_012641448.1|40636_41188_+|biotin--[acetyl-CoA-carboxylase]-ligase
MVAWVVHRYQRVTSTMDIAADLAAQGAPAGTVVLAEEQTEGRGREGRRWLAPPGTSLLFTVIARPPFAVVQDERLAVRVAEHVAAAIAATCGLRPSIKEPNDLLVKGRKLVGILLQSRVRAEVLEYLLLGIGINVNIPADCLPLPTATSLLVELGHPVDRDRLLAAVLDQLARDERLFPPTVR
>NC_011959.1|WP_012641449.1|41174_42314_-|LLM-class-flavin-dependent-oxidoreductase
MKDARLALALVVPAQPPLASVLGLVRLARLLRFDAVMVWDHLQDFVPRVLWSPRTTWIARLRRSPHPYYDFASLLGRLSAHAGRLRLGVGVTDPIRRHPVLLAQTALTLAHLTRRPPIIGIGAGEAENLEPYGFPFDRPVTRLEEALAILRACLDTPGTIRFAGRFYQITDGVFELTAPPRRRPEIWLGAHGPRMLELTGRFADGWYPNWIDSPERYAARLAQVRQAAERAGRDPTQIVPALQAPVLLAPTENAARRLLHHPALRLTGLLRPADEWRELGLEHPLGEHFRGYLDFIPERVDPHALRAALRAVPPELVERSFLWGTPEQVLARIRDYREAGLRFLGLLPVSALASPQVAAWTVFTLWRLRRSLARELTER
>NC_011959.1|WP_143714576.1|42581_42833_+|hypothetical-protein
MRRMEKVAQLSCQVRELWAVSSELVAAHRAALARFAQGEQAIAARRETVEAEGDQARALRETVRQQTEQLRATVEEHARPIAE
>NC_011959.1|WP_143714577.1|43070_43439_+|hypothetical-protein
MLEKITERPSGDRAEQLRRLVGGAVFDAVLETDLLVRERLRQDPSVGLWRVVAVSGVVDRTDGERVATRALVLQPALRRVVPLVVGEGTTEGAMGRADRLDVVTLPNGRRQDGKQEEARWVA
>NC_011959.1|WP_012641453.1|43717_44929_+|acyl-CoA-dehydrogenase-family-protein
MDFEFTPEQIQVRDMVREWAQREVAPYIREWDAKGEYHPEIYRRMGELGLLGLPIPERYGGGGFDYIALALACEELEAVDTFLRVAISVHVGLNSLTLLQWGTEEQKQRWLVPQARGEKLATFALTEPGAGSDAGHIQTRAVRDGDSYILNGEKMWISLANTADHFLVFATLDPALGHRGLCAFMVERGMPGLTTGSIHGKLGVRAGDTGWISLQNVRVPAENMIGEPGEGFKIAMSAIDQGRFTVAAGACGLIRACLEASVKYCHERQAFGQEIGRFQLVQQMIAKMVRGYETSRLLVFRAAELKNRGIRNTRETSLAKWHACDCAFEAANDAVQIHGAYGYSSEYPVERYFRNSRGAVIYEGTREIHTLLQAEYALGYRVDKLLRCPQPPAQGYETVVARG
>NC_011959.1|WP_012641454.1|44930_45467_+|gamma-carbonic-anhydrase-family-protein
MRPLVIPYRGKQPQLAPDVFVAPTAVVIGDVVVGSRSSLWFGVVLRGDIGPIRIGQRVNLQEGVIVHLDEGFPVVIEDDVTIGHGAIVHGAQIAAGAQIGMGAILLTGSRVGAGAIVAAGALVPEGMEVPAGTVAVGIPARIRREVTTEERAELLERAQRYAQRGEEFRRLLAGGGEA
>NC_011959.1|WP_012641455.1|45463_46237_+|enoyl-CoA-hydratase/isomerase-family-protein
MSVRVEREGAITLVTVERPERLNALDTATLRALLAAVQELATEEAIAVVVLTGAGDRAFIAGADISEMVEKSPAEALAFAELGHAVCRAIEEAPQPYIAAVNGYALGGGCEIALACDIRLASERAVFAQPEVTLGIPPGWGGSQRLPRVVPPGIARELLYTGRRVDAQEALRIGLVNAVYPADQLLERARELANRIAANGPLAVRLTKAAVRFGLEQGLEAGLTYERQVFAYAFTTEDQREGMRAFLEKRRPAFRGR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011959_1	1.69\|35812\|36\|NC_011959\|PILER-CR	35812-35847	36	NZ_CP015091	Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence	63482-63517	10	0.722
NC_011959_1	1.78\|35809\|36\|NC_011959\|CRISPRCasFinder,CRT	35809-35844	36	NZ_CP015091	Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence	63482-63517	10	0.722

1. spacer 1.69|35812|36|NC_011959|PILER-CR matches to NZ_CP015091 (Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence) position: , mismatch: 10, identity: 0.722

tcacaggcgatcaccgccacctcgatgccgagctgg	CRISPR spacer
acctcggcgatcaccgccacctcggagccgaagggc	Protospacer
 * . *******************. *****.  *

2. spacer 1.78|35809|36|NC_011959|CRISPRCasFinder,CRT matches to NZ_CP015091 (Pelagibaca abyssi strain JLT2014 plasmid pPABY1, complete sequence) position: , mismatch: 10, identity: 0.722

tcacaggcgatcaccgccacctcgatgccgagctgg	CRISPR spacer
acctcggcgatcaccgccacctcggagccgaagggc	Protospacer
 * . *******************. *****.  *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NC_011961_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011961_1

122024-122151

TypeIII

Consensus_repeat	Method
ACCGAGCGCATGGAGCGGGTGGA	CRISPRCasFinder

2 spacers

csm3gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11

The CRISPR arrays of NC_011961_1

>merge|NC_011961|1|122024-122151|CRISPRCasFinder
ACCGAGCGCATGGAGCGGGTAGAGGGCCAGATCGCTGCCCTGACCGAGCGCATGGAGCGGGTGGAGCAGCAACAAACAGCCACGACCGAGCAGATTCGCCAACTTACCGAACGCATGGAGCGGGTGGA

>NC_011961|1|1|122024-122151|CRISPRCasFinder
ACCGAGCGCATGGAGCGGGTAGA	GGGCCAGATCGCTGCCCTG
ACCGAGCGCATGGAGCGGGTGGA	GCAGCAACAAACAGCCACGACCGAGCAGATTCGCCAACTT
ACCGAACGCATGGAGCGGGTGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011961.1\|WP_012643309.1\|113861_114668_-\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379142
NC_011961.1\|WP_012642808.1\|108892_109816_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|274210
NC_011961.1\|WP_143714758.1\|114677_115580_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NC_011961.1\|WP_012643300.1\|126560_127151_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|183384
NC_011961.1\|WP_012642636.1\|117047_118442_+\|dipeptidase	unknown	unknown	gnl\|CDD\|349929
NC_011961.1\|WP_012642389.1\|110884_112699_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	cas10	cd09679_cas10_CAS-III	gnl\|CDD\|187810
NC_011961.1\|WP_012643032.1\|115579_116920_-\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012642462.1\|128379_129120_+\|DUF2334-domain-containing-protein	unknown	unknown	gnl\|CDD\|200603
NC_011961.1\|WP_012643187.1\|125703_126303_-\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372666
NC_011961.1\|WP_012642571.1\|130522_131122_+\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012642671.1\|129094_129808_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133013
NC_011961.1\|WP_012642793.1\|129812_130526_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133013
NC_011961.1\|WP_012643001.1\|123799_124210_+\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012642645.1\|123382_123766_+\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_143714841.1\|122266_122689_+\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012642478.1\|108455_108878_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	cmr5gr11	pfam09701_cmr5gr11_CAS-III-B	gnl\|CDD\|378242
NC_011961.1\|WP_012642992.1\|109817_110888_-\|crispr-associated-protein,-Cmr3-family	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879
NC_011961.1\|WP_012642600.1\|112691_113846_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	csm3gr7	pfam03787_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|273859
NC_011961.1\|WP_012642741.1\|127119_127863_+\|anti-sigma-factor	unknown	unknown	gnl\|CDD\|378389
NC_011961.1\|WP_143714759.1\|119276_120989_+\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990

Protein	Function_ID	Function_description	E-value
NC_011961.1\|WP_012643309.1\|113861_114668_-\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	1.95862e-25
NC_011961.1\|WP_012642808.1\|108892_109816_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|274210	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4. This model represents a CRISPR-associated protein from the family that includes TM1792 of Thermotoga maritima. This family is part of the broad RAMP superfamily (pfam03787) collection of CRISPR-associated proteins. It is the fourth of a recurring set of six proteins, four of are in the RAMP superfamily, that we designate the CRISPR RAMP module.	1.32708e-67
NC_011961.1\|WP_143714758.1\|114677_115580_-\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	7.80387e-08
NC_011961.1\|WP_012643300.1\|126560_127151_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|183384	PRK11924, PRK11924, RNA polymerase sigma factor; Provisional.	3.93479e-42
NC_011961.1\|WP_012642636.1\|117047_118442_+\|dipeptidase	gnl\|CDD\|349929	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine.	0
NC_011961.1\|WP_012642389.1\|110884_112699_-\|type-III-B-CRISPR-associated-protein-Cas10/Cmr2	gnl\|CDD\|187810	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; MTH326-like has inactivated polymerase catalytic domain; alr1562 and slr7011 - predicted only on the basis of size, presence of HD domain, and location with RAMPs in one operon; signature gene for type III; also known as Crm2 family.	2.76853e-43
NC_011961.1\|WP_012643187.1\|125703_126303_-\|ferritin-like-domain-containing-protein	gnl\|CDD\|372666	pfam13668, Ferritin_2, Ferritin-like domain. This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins.	5.64195e-20
NC_011961.1\|WP_012642793.1\|129812_130526_+\|glycosyltransferase	gnl\|CDD\|133013	cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.499e-30
NC_011961.1\|WP_012642462.1\|128379_129120_+\|DUF2334-domain-containing-protein	gnl\|CDD\|200603	cd11374, CE4_u10, Putative catalytic domain of uncharacterized bacterial proteins from the carbohydrate esterase 4 superfamily. The family corresponds to a group of uncharacterized bacterial proteins with high sequence similarity to the catalytic domain of the six-stranded barrel rhizobial NodB-like proteins, which remove N-linked or O-linked acetyl groups of cell wall polysaccharides and belong to the larger carbohydrate esterase 4 (CE4) superfamily.	3.56307e-68
NC_011961.1\|WP_012642671.1\|129094_129808_+\|glycosyltransferase	gnl\|CDD\|133013	cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	4.55656e-42
NC_011961.1\|WP_012642478.1\|108455_108878_-\|type-III-B-CRISPR-module-associated-protein-Cmr5	gnl\|CDD\|378242	pfam09701, Cas_Cmr5, CRISPR-associated protein (Cas_Cmr5). CRISPR is a term for Clustered, Regularly Interspaced Short Palindromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species.	2.8147e-26
NC_011961.1\|WP_012642992.1\|109817_110888_-\|crispr-associated-protein,-Cmr3-family	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	9.99601e-57
NC_011961.1\|WP_012642600.1\|112691_113846_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr1	gnl\|CDD\|273859	TIGR01894, hypothetical_protein, CRISPR type III-B/RAMP module RAMP protein Cmr1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents the region of stongest conservation, the N-terminal half, of one such family, represented by TM1795 from Thermotoga maritima. This protein is the first of a set of six genes, mostly from the RAMP superfamily, that we designated the CRISPR-associated RAMP module.	6.83098e-17
NC_011961.1\|WP_012642741.1\|127119_127863_+\|anti-sigma-factor	gnl\|CDD\|378389	pfam10099, RskA, Anti-sigma-K factor rskA. This domain, formerly known as DUF2337, is the anti-sigma-K factor, RskA. In Mycobacterium tuberculosis the protein positively regulates expression of the antigenic proteins MPB70 and MPB83.	5.9492e-18
NC_011961.1\|WP_143714759.1\|119276_120989_+\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	2.18883e-12

>NC_011961.1|WP_143714759.1|119276_120989_+|NERD-domain-containing-protein
MATMYPQFPRYCGFQSDAKLLVYGVLAHQLPDECIVLFGVRLLVRDGPDEIDAEADFIIVEPECGVLVLEIKGGGIRRDARTGQWFSLDRRGEQHAIGNPIEQARRTRYALARKLKEGPRTKLFDYPIRHAVIFPDVTLRQQWLGPDVEPDIVLDERSLTGLHGAIRRALGGPRPEGPLAPAAIQALVDALSPTIEVRKPRLGRLVREAEEEIVQLTERQFAVLRLLERHRRARIVGPAGSGKTMLAIEKARQLALQGNRVLLTCFNRNLSRWMRRTLQDALGTTELFEGDRPLLVVTHFHGLVRDFCERTGRRFQPPAGDRREEERFWKEQAPQILIDSVEQLPDLRFDAIIVDEGQDFLTDWWIALLEVLGDQERGFLYIFYDDNQTLYTDSRQLEFPIVDEPYMLAEVFRNTRPIFERFRPFYRGSIEPLFRGPDGPEVEEVPVTGQGVLQALASRLRRLFEEEGIEPRDVVILTPRSRERSALRDKTRIAARWQLTWEPVDREEVNHRVRASSIHAFEGLESPVVILAELDDLAHPRVDEPLSVALSRARSHLIVLGELPVDLLSL
>NC_011961.1|WP_012642636.1|117047_118442_+|dipeptidase
MQDLVQRCDRYLAEHEAEHLQALGDLLRIPSVSALPQHQADVQRAAEWVAARLRAIGVPEVRLLETERNPIVFGHWPVDPSLPTALVYGHYDVQPPDPLELWETPPFEPTLRDGRLYARGASDDKGNLFAALCGIEALVRIIGHPPINLKFFFEGEEEIGSPSMAAAIRQYRELLACDVVISADGGMYGHDQPSLTLSSKGICACQVDLRTAATDMHSGQYGAVIANAVQTLVQLAATFHTPDGRVAVAGFYDKVRELSPEERAEIAAVPFDPDEFLANVGAKALWGEPGYTPLERAWARPTLDLNGFWGGFQGEGIKTVTPCEAHLKITCRLVPDQDPEEILDLIERHVQAHCPPWAEVRVTRFPGSARPFAIRRDHPALAAAREVLRELYGKEPLMTRVGGTIPVAELFQRELGADMLFFAWGMPDNRVHAPNESYRLEDFRTMARAYVRLLPRLATVMARA
>NC_011961.1|WP_012643032.1|115579_116920_-|hypothetical-protein
MRSRWFVTALLLATLLAPALPVSAQQPGLSVAFWRTWARADRPVAEGRAARTWMWGPAPITHVLVEEYDEATDFDGDVLGFRMVQYFDKTRMEITDIGADPVNPWYVTNGLLAKELITGQVQLGHNRFAQAPAARVPVAGDLDDPNAPTYASFQPLMGYQPLPVGMTIIQTVDRNGTVGADQTVARYGVTAAALVRETNHTVASVFWDFMNARGTVYSDGAFREDRLFENPFYATGFPLTEAYWTTVRVGGVPKRVLVQVFERRVLTYTPDNPPGWRVEAGNVGLHYYQWRYGQLGEQPVTWDTARPEELPYYDAIIPTVFPLAAELQPLAAMLDNPALDAPGWRADIERRLIFLQDCARAMREATPPPTLSAFHSELMVGLELVERGAVRIRRALDTRDPVLLWQGRDDIAAGLRAFANAFERYRNQLRAVPGSEPVVFLAEGVH
>NC_011961.1|WP_143714758.1|114677_115580_-|hypothetical-protein
MRCTACQAALPAEARFCPACGQPVPDPVPTPDTAALPLTAGKATGDSPASSDASLPAPDEPKGQPAPPSPPDHPAAPGEPAMPRSSAASASAPAPGRNRTVTLLGILSGLLLLALLASGALAYVELDRRQARERALGEQIASLSQANRDFQTQVQSLTSERDRLATERDQLIGERDRLQSRLNELMATNAEQEKRIQELTGQVQEQSRQLSQVREEATRQQQRAETAENIGSILTRVVLLDDQIHNEFDNLIDAMTDMQNAYRYGDRIAFANAYERGLQAARRLDQLFAQRDQLLAQLGF
>NC_011961.1|WP_012643309.1|113861_114668_-|trypsin-like-peptidase-domain-containing-protein
MGRANSLLLVAVLFAGLLTLALAGLAVARWRAPVDVPALDTRVVLTVTPIPTVPPLTPAPTAPAPTPVASGPADPGDRATMVNRALHGVLQVRVPDGLGTGFVWARESDRTLVVTAAHVVAGWERVEVIAPDGTAHPATVRQRDERHDVALLEAPALVGVQPLPRGQSRQLPLGSALTALGYALGDQLLGEPTVTRGVLSGRRTFDGIEFLQTDAALNPGVSGGPLLDEQGRVVGMAIGGIPWAGEIPAQGVNFAVAIEEIEQVVAMA
>NC_011961.1|WP_012642600.1|112691_113846_-|type-III-B-CRISPR-module-RAMP-protein-Cmr1
MSKEHSLPSVRLPLETLTPLFLGGADPRGDPELRASSIRGALRFWLRALLGGCYGTDDQALAEIRRLEAETFGEAGGEGKAGASKIVVRVRQEQQSAPQEWRAARDSGRAYLFFSMAPSRARDQEIPARRALAPPYPFSIDLLARPGVDEREAREALYRAVRSAWLLLHLGGLGARARRLGGALAHRPVPRRSPDGATTPAVPSHLNLPFALSPEPQQAARQLAEGLRLLRQRSQARADANPERPGWEVLDPRWCRIWVFGERGWTSGERGWPTVADAIGEWLRETRRALPTEQRLVFGAPLVIPKQHKTIEPPSGYERRERRPSPLWLSVTRAENGNLLGVATLFQSRFLPLRRGGEEQLERLYTQIAAAVAQLPNVAEVQYA
>NC_011961.1|WP_012642389.1|110884_112699_-|type-III-B-CRISPR-associated-protein-Cas10/Cmr2
MPDAVLRFTFGPVQAFIAEARRTADLYAGSHILAELARAVARSLQDAGAELVYPADLGSGDPPNVIVARVPWEDVEQLAERAAAALQTRWEQLASDALAKIESYAPLDDALRAQWQAQTGDVWEIYWAAARIEQDDYATAFHRAQAGVAALKKTRTFTQRAEAGAKDSLGGNRAALAPAGQDPRAFWRAVRRHPQGGRLVGEHERLDAVSAVKRFAYSEEAYPSVPTIAARPFARLAAERAAPALESYRDAFELLVTAFGQRPDRYRRTRHTVEAFPYDGAFLYESTLEWPALLEELGLDPDEAERLRSQVETPLRTARHRLAELYQAVGQRPSRYVAVVVLDGDSMGQWLTSALAQGGEPVHREISRKLAGFAASVEETARQQARDAVFIYRGGDDVLALTPAEQAVSLALALAAAFAEITDGRSASAGIAIGHWLEPLGDLLRSAREAEKRAKRLPGKGAVAVELQPRGGEIVHVVARADRLMGLDLPDLVDRFRRDGAGSLSGRLPTDLRQYARTFPQADAAFRAVLARSVKRQGEWPSGTADERERLVERLYGFATSYDQLRASLPGEDDSRRFERVPSGPAQLADWLALARFLARGGGE
>NC_011961.1|WP_012642992.1|109817_110888_-|crispr-associated-protein,-Cmr3-family
MTTLFLEPLDVWLFRDGRPFTAGQQFRAASRFPPSPLVVQGALRAYHLMVHSTVPPWDAAAVAGVVGGPDDWGPLRLVGPLVARRTASGEFEVLLPPPADAAFPGRQARRLPLPEQPPEWLRLPTPTPALFPLWHAGEPVSEKASQRLWLRLTDFAAYSRGEPVPGVPQEELWAEEVRIGIAQDSSRRTTREGLYYEARYVRPAPGVGLLVSFTGLDWPEPAGVLALGGERRSARFEVVTSFAPPPVPEPLPERFVLFFLTPAVFERGWLPRDWGAFFEGSVELVAAALDRYETVGGFDLARGRERPAHRAVPAGSVYYFVARGEARLRRTSDLPWPTVSDWGAEIGFGTVLIGGW
>NC_011961.1|WP_012642808.1|108892_109816_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MAEASALLFAYCETPVHAGTGRAVGTVDLPIQRERITGFPIAQASSVKGVLRATTQANGADAERHRALFGPDRPEEASTHAGALQVTDLQVVLFPVRSLAGVFAWTTSPAVLARLVRLAKLAGIEGPVDPTRFAGLQPGQCAVANGSALLTPAGQQVGVVLEEYSFTLAGELAGLVSALAEWLVALALPQTPEYAWWRENLAKHLCVLPDDEFRDFVLYATEIEAHVRLKDETKTVEPGALWTTETLPAETLLVGLLATTRSRYDKVNEDGRALLGWLTGKLDGRRVRLGGDETTGRGAVVLRVARV
>NC_011961.1|WP_012642478.1|108455_108878_-|type-III-B-CRISPR-module-associated-protein-Cmr5
MSQPVHRTTQQRTLEQQRAARAWACVAAVKGTSYAAEYGQLAREAASLVQLHGLGQTLAFLVSKRPDKPGQVNAHLHLARDLSRWVGTQLTGQELDDLREWIVRHASVAEYRRATLEALAFLAWLKRFAEAELVKEGADA
>NC_011961.1|WP_143714841.1|122266_122689_+|hypothetical-protein
MESKARDRAPAVFGPWLERVRLAPVDEIRRRVLPVLGKEGLRRILAADVIVSGRADDLPNAPTVWLVVEVSAVVDPSDVARALERAALLRQVTENVIPVVWGPQLTEEARYLAEEQALVVVRDGALEGWEAALQRWVATG
>NC_011961.1|WP_012642645.1|123382_123766_+|hypothetical-protein
MAIDHLLEQLLDRIRHDPDLRRQLAQLLFGRELAQLADQLAQLASLVRSLAESTQQGFQLLAERSSLVERELATLRRVVGELAEQQRATTAQITALTERMERVEGQIAQMTAEVALLALSVQRLDDR
>NC_011961.1|WP_012643001.1|123799_124210_+|hypothetical-protein
MRDRAPAIFGSWMDATRVVPPMEIRRLVRESLTRSQLPRLLDADIIVTGELDEHPATPTVWLVIEVSTTVDASDVERALARANLLRRVVPNVIPVVTGDQLVDQARKMAEEERVVIVRDGTLTGWDEAIEQWVVAA
>NC_011961.1|WP_012643187.1|125703_126303_-|ferritin-like-domain-containing-protein
MQCQSVQDIISIAATAEALAVTVIGEALAAAERGELALTEDERTFLRAARAAEQAHYEVLTAAGAKPLTLVFTVPDTRAVSDPVLLLRTAIGLEEAFIAAYCAAAQQFASLGQPDLVRVAVQIGGVEAEHRALLRHFAILRGALGGVPDDVAYQKALFSSVGSAADALIQLGWIGGSGPEIRYPGPGAIDTRGVKQLRP
>NC_011961.1|WP_012643300.1|126560_127151_+|sigma-70-family-RNA-polymerase-sigma-factor
MSGGEDITLLQAVARGDEDALVQLYDRYGRQAFGLAYRILGDAASAEEVVQDAFLALWHHARLLTMHTGSARAWLLTVVRNRAIDHLRRRRGQVQLVSLDAVVLPSIADDTAREIIERVQRADLLKALDALPKEQREVVELAYFEGLTHHEIATRLRIPLGTVKSRLRLALLRLGRTLEGYEGEAPDATLADEQPT
>NC_011961.1|WP_012642741.1|127119_127863_+|anti-sigma-factor
MPLSQMNSQRDWVQHEEIRELLPGYALGILTEDEQRRVEAHLVTCTDCRVELDRFRTTVLVLALAAPEREPPGSLRTSIRAAVQQQGERVATPQAVRSRFERWRERFQQRVALAWGLAVVALLASFILAGWNVMLQRQLSGVQYRIAAGTVSGNIRYLPSEQVLVIDLRGLPTLPAERVYQLWAIPDGTPVPMATFTETTRRIAVVGDPATLGTLAITVEPGPLGSPSPTSQPLVMIDLRHQRGTAS
>NC_011961.1|WP_012642462.1|128379_129120_+|DUF2334-domain-containing-protein
MARRVLVSVHDVAPAWVEEVRWLLRELDAIGARPRSLLVIPCHNGRDDLRRCPELVELLQVEVANGSEIVLHGYTHARAWRWRGDPLTVARAALFAREVAEFASLGWPEQRARLIAGREILAACGLETTGFCPPGWLHTAELPSLLAELGFAYLVEMLFLVDVCDQRRLPTPWMGFMGTPWLHEGLAQLGARLLAPWRARARTISVFFHPQGAPDSPVCRRALRELARELERGGEPSTYGAAIALP
>NC_011961.1|WP_012642671.1|129094_129808_+|glycosyltransferase
MEQRSHCPDLSIVIPARNEAATIERALVSVLHQAWPLERLEVIVVDNGSTDGTAAVVCRFAHAHPELQLQVVHEPRPGVSRARNRGARVARGKVLLFLDADSRLAPTMIPTVLGHLHRGEAAVSLRVVADSNDPIDRAFFFLATWAKERLRVPTQLCAVRRDVFLAVGGFDERLRIAEDYDLLRRIRAAGWRVGFVTESSVLTSPRRLHRWPLRLGLLVTALQWLVALAGIGRDWPY
>NC_011961.1|WP_012642793.1|129812_130526_+|glycosyltransferase
MQNVAGTIDISVIIPARNEEAFVARALRSIARQAWPLERLEAIVVDNASSDGTAAVVLQVARELAPLRIVLVEERTPGRSRAKNRGAAVAQGTLLLFLDADSVMAPTLASELVAHWHTGYPAGSIRVIAETTDRLDRWFFDLMELGKTLFRIRAQMLYCSRAWFERAGGFDERFEIAEDREFLQRLQRMGVPVCHLTTSWIATSPRRLRRLPLRLGLVITFLRWLLAELGVGRHWRY
>NC_011961.1|WP_012642571.1|130522_131122_+|hypothetical-protein
MKELPWWLIRLGRAGGGRAIGLLAVWLGWERLTELVWRPQSVRPGGFFRYRIVRYRGPTMILADGTRIEPGDTIVELHFDNRRLLRLWLAGASLPWELLRLAREDLAELACRIARGELGEVRALTGVTLFARAGRRLGFQVEPAPPTWYTRLQRFFFVGLIAIYHPLGWRMAERYRERAWPGRAWMSRASLLARYGAGC

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Crispr_ID: NC_011961_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011961_2

405759-405849

Orphan

Consensus_repeat	Method
ACCCCGACCGTCGTCAAGAAGCCGACGATCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011961_2

>merge|NC_011961|2|405759-405849|CRISPRCasFinder
ACCCCGACCGTCGTCAAGAAGCCGACGATCGCGCTGCCGACGATCGTTCTGCCGACGCCGACCCCGACCGTCGTCAAGAAACCGACGATCG

>NC_011961|2|2|405759-405849|CRISPRCasFinder
ACCCCGACCGTCGTCAAGAAGCCGACGATCG	CGCTGCCGACGATCGTTCTGCCGACGCCG
ACCCCGACCGTCGTCAAGAAACCGACGATCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011961.1\|WP_169302311.1\|404097_404430_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|253298
NC_011961.1\|WP_012643070.1\|413651_415190_-\|ethanolamine-permease	unknown	unknown	gnl\|CDD\|129986
NC_011961.1\|WP_012642456.1\|411195_412803_-\|flotillin-family-protein	unknown	unknown	gnl\|CDD\|259798
NC_011961.1\|WP_012642865.1\|402487_403798_+\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NC_011961.1\|WP_012643154.1\|397173_397683_+\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012642556.1\|396752_397160_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238206
NC_011961.1\|WP_012642756.1\|400206_400377_-\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_081433498.1\|409623_410466_-\|PrsW-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|379143
NC_011961.1\|WP_012643272.1\|394932_396174_+\|amidohydrolase/deacetylase-family-metallohydrolase	unknown	unknown	gnl\|CDD\|236423
NC_011961.1\|WP_143714784.1\|404574_404760_-\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012642435.1\|397726_400210_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379314
NC_011961.1\|WP_012642758.1\|408460_409684_+\|tRNA-4-thiouridine(8)-synthase-ThiI	unknown	unknown	gnl\|CDD\|234960
NC_011961.1\|WP_012642931.1\|408226_408409_+\|SelT/SelW/SelH-family-protein	unknown	unknown	gnl\|CDD\|378415
NC_011961.1\|WP_012642641.1\|406542_407733_+\|DUF11-domain-containing-protein	unknown	unknown	gnl\|CDD\|223021
NC_011961.1\|WP_012642960.1\|396174_396699_+\|deoxyuridine-5'-triphosphate-nucleotidohydrolase	unknown	unknown	gnl\|CDD\|179395
NC_011961.1\|WP_012642840.1\|412799_413354_-\|NfeD-family-protein	unknown	unknown	gnl\|CDD\|376684
NC_011961.1\|WP_012642487.1\|415220_416003_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180371
NC_011961.1\|WP_012643129.1\|410707_410983_-\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012642529.1\|400730_402161_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|181856
NC_011961.1\|WP_012642857.1\|416017_417403_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252

Protein	Function_ID	Function_description	E-value
NC_011961.1\|WP_169302311.1\|404097_404430_-\|hypothetical-protein	gnl\|CDD\|253298	pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in cattle. The antigen has been shown to contain five distinct linear peptide sequences recognized by sporozoite-neutralising murine monoclonal antibodies.	1.05227e-05
NC_011961.1\|WP_012643070.1\|413651_415190_-\|ethanolamine-permease	gnl\|CDD\|129986	TIGR00908, putative_ethanolamine_permease, ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily. [Transport and binding proteins, Amino acids, peptides and amines].	1.71997e-122
NC_011961.1\|WP_012642456.1\|411195_412803_-\|flotillin-family-protein	gnl\|CDD\|259798	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. The flotillin (reggie) like proteins are lipid raft-associated. Individual proteins of this SPFH family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. In addition, microdomains formed from flotillin proteins may be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and interact with a variety of proteins. They may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and in cancer invasion, and metastasis.	1.87073e-59
NC_011961.1\|WP_012642865.1\|402487_403798_+\|RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	7.70587e-31
NC_011961.1\|WP_012642556.1\|396752_397160_+\|hypothetical-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	6.51571e-05
NC_011961.1\|WP_012642840.1\|412799_413354_-\|NfeD-family-protein	gnl\|CDD\|376684	pfam01957, NfeD, NfeD-like C-terminal, partner-binding. NfeD-like proteins are widely distributed throughout prokaryotes and are frequently associated with genes encoding stomatin-like proteins (slipins). There appear to be three major groups: an ancestral group with only an N-terminal serine protease domain and this C-terminal beta sheet-rich domain which is structurally very similar to the OB-fold domain, associated with its neighboring slipin cluster; a second major group with an additional middle, membrane-spanning domain, associated in some species with eoslipin and in others with yqfA; a final 'artificial' group which unites truncated forms lacking the protease region and associated with their ancestral gene partner, either yqfA or eoslipin. This NefD, C-terminal, domain appears to be the major one for relating to the associated protein. NfeD homologs are clearly reliant on their conserved gene neighbor which is assumed to be necessary for function, either through direct physical interaction or by functioning in the same pathway, possibly involve with lipid-rafts.	1.31446e-05
NC_011961.1\|WP_081433498.1\|409623_410466_-\|PrsW-family-intramembrane-metalloprotease	gnl\|CDD\|379143	pfam13367, PrsW-protease, Protease prsW family. This is a family of putative peptidases, possibly belonging to the MEROPS M79 family. PrsW, appears to be a member of a widespread family of membrane proteins that includes at least one previously known protease. PrsW appears to be responsible for Site-1 cleavage of the RsiW anti-sigma factor, the cognate anti-sigma factor, and it senses antimicrobial peptides that damage the cell membrane and other agents that cause cell envelope stress, The three acidic residues, E75, E76 and E95 in Aflv_1074, appear to be crucial since their mutation to alanine renders the protein inactive. Based on predictions of the bioinformatics programme TMHMM it is likely that these residues are located on the extracytoplasmic face of PrsW placing them in a position to act as a sensor for cell envelope stress.	1.061e-22
NC_011961.1\|WP_012642758.1\|408460_409684_+\|tRNA-4-thiouridine(8)-synthase-ThiI	gnl\|CDD\|234960	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional.	0
NC_011961.1\|WP_012642487.1\|415220_416003_-\|SDR-family-oxidoreductase	gnl\|CDD\|180371	PRK06057, PRK06057, short chain dehydrogenase; Provisional.	8.25501e-121
NC_011961.1\|WP_012643272.1\|394932_396174_+\|amidohydrolase/deacetylase-family-metallohydrolase	gnl\|CDD\|236423	PRK09237, PRK09237, amidohydrolase/deacetylase family metallohydrolase.	0
NC_011961.1\|WP_012642931.1\|408226_408409_+\|SelT/SelW/SelH-family-protein	gnl\|CDD\|378415	pfam10262, Rdx, Rdx family. This entry is an approximately 100 residue region of selenoprotein-T, conserved from plants to humans. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins, including selenoprotein T. However, despite its binding to UGTR and that its mRNA is up-regulated in extended asphyxia, the function of the protein and hence of this region of it is unknown. Selenoprotein W contains selenium as selenocysteine in the primary protein structure and levels of this selenoprotein are affected by selenium.	4.63123e-20
NC_011961.1\|WP_012642641.1\|406542_407733_+\|DUF11-domain-containing-protein	gnl\|CDD\|223021	PHA03247, PHA03247, large tegument protein UL36; Provisional.	0.000429727
NC_011961.1\|WP_012642960.1\|396174_396699_+\|deoxyuridine-5'-triphosphate-nucleotidohydrolase	gnl\|CDD\|179395	PRK02253, PRK02253, deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional.	7.38873e-65
NC_011961.1\|WP_012642857.1\|416017_417403_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	4.39393e-136
NC_011961.1\|WP_012642435.1\|397726_400210_+\|ATP-binding-protein	gnl\|CDD\|379314	pfam13654, AAA_32, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	0
NC_011961.1\|WP_012642529.1\|400730_402161_-\|aspartate-kinase	gnl\|CDD\|181856	PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional.	0

>NC_011961.1|WP_143714784.1|404574_404760_-|hypothetical-protein
MAVFASAPFATVAQSCADPPDNVAIVWKPTWYMVPGGLPGIVPAAVQVVPLQLQLAVPLYS
>NC_011961.1|WP_169302311.1|404097_404430_-|hypothetical-protein
MLTARSHPAVVVGGVSLPGVGVAVGVEVGVGVGVGLGVAVGVGVGAGVGLGVGVDVSVTVGDDEDDDETGESSPELTAGGVATLAGCTVATCGGETVLLPDSDGVPVVAG
>NC_011961.1|WP_012642865.1|402487_403798_+|RNA-polymerase-sigma-factor
MTSRTTLVHKQPPDLTDDELVARFRAGDREAFALLYERYVDRVYDFVARLVRDREAAADLTQETFLKAMQGLRARHVQGSLRAWLFTIARNTVIDYQRRQRTTAFSQLPSPEGEEWEPELPASGPEAEPEETARRRELAELVWQAARGLPPSDYTILELALRHDLTPAEVARVVGVRRGAINTRLSRVRDALEESFTVLLLARRGREDCPELARLLEGVVLPLGLTPELRRAVARHVDQCEICQRNRRAISAVDLLPALAPILPAPEIREKIRQSLEQALATPASAPHPVQKLQEWLRQSAWGKALAGLVAGMVVLVSAGWAYLSWGTAPVKVETRNCPPLELRLAGPAALAGRALGVPSLLAPGQPASFRLPAGEIEVQVSEREATLRLAGIPVRIRILADLAAVSWDGEDLLGQGPVQRQVARSARQAVVLVCR
>NC_011961.1|WP_012642529.1|400730_402161_-|aspartate-kinase
MRVMKFGGTSVGNAVAIDRTARIIADAYRGDGRLVAVVSAMSGVTNQLIAAAQAAAEGDEQAAARLQQELVERHRGAAAELIPTAARLEATVSRLTELATRCARLVESVHVLRDLSPRAQDWIVSFGERMSAVLIAAVLEERGIPAVPVDSDKVIVTDDHFGSANPLLDETRARAEAILVPLLEAGKLPVVTGFFGATPKGAVTTLGRGGSDFSASILAHALDADEVWIWTDVDGVMTADPRLVPSARTLPAISFAEATELAYFGAKVIHPRTMQPAAERGIPIWIKNTFNPEHPGTRIGPDTSSNGSVVKAITAIPGVSVITVEGSGFLSVADVTARVFETVGRTGVNVFMVFQASSQHSLGFVVRRTDASKVLRALEREFELDLLKGRVARLWEEPGMAIVAVVGAGMRGTPGVAGRVFGTLGQHRINIVAIAQGSSELNISFVIREDEVARAVPAIHDAFGLGGSAGERSAGS
>NC_011961.1|WP_012642756.1|400206_400377_-|hypothetical-protein
MSILLLALVAAAAAILAAVVALLLRWFGIAPAEPEQRTRGIELLAERIRERLVQRR
>NC_011961.1|WP_012642435.1|397726_400210_+|ATP-binding-protein
MSGAATERAAQRRVPVERLRRRLDPMTLPFQTTAEVDPVVGTVGQPRALEALEFGLEIASYGYNVYVAGRPGSGRESTVLRLVEQIAAKRATPPDWVYVHNFQDPERPVAIALPAGRGAQLARDMDEFLRAAQQAIPRAFESEEYDRRRRAIIDRLNQERERLWEGVQQFAQQLGFTVELTPAGVISLPLVQGRPLAPEEYERLPPPVREELERRNQRIQDRVADALREVRRLERETAERLRQLDREVALFAVGGLFEELRERYQDLPQVLAFLEQVREDIPEHLHDFFPPQLPGVPAPIAQLQALQQQEHLARYRVNVFVDNSQTRGAPVIFERNPSYYNLVGRIDYRATFGAMVTDFSQIRAGALHRANGGFLVVHVLDLLANPFAWDALKRALITRQVVIENLGQQYAVLPTATLRPDPIPLDVKVVLVGSPFLYYFLAAYDDDFRELFRVRADFAPDMDWNDQHVMGYAAFISRVVREQGLRHFDRSAVARVIEYGARQVEHQRKLSSQLLEIGNLVAEASYWASKAGREIVTAEDVETAIRKKRYRSDLLAERVRDLIAEGTLKIETSGARVGQINGLAVIELGDFAFGKPSRVTARVSLGRGNLISIEREIALSGPIHSKGFLILSNYLAGAYAQDFPLAITASITFEQAYEEIEGDSASSTELYALLSALSGLPIKQGIAVTGSVNQYGDVQAIGGVNEKIEGFFAVCKVQGLTGEQGVIIPTANVQHLMLDEEVIQAVAEGKFHIWAVDSVDQGIEILTGVPAGERQPDGTYPEGTVHRLVMDRLREYAERMRDFGRREEREERSERTEAADPEPAGEH
>NC_011961.1|WP_012643154.1|397173_397683_+|hypothetical-protein
MLRRIIGALRLDPTVYRELRDDPTATVPALLFVLLCVLAAGVGGLPGGGLTAFGIVAASAFVSWTIFVVAAYLFGTKALPGPETEATLGALVRTLGFALAPSLLLVFGVVPALQLVVVPLAFVWTFFATLMALRETLAVGTLRALLVAVLSYGAAALLGSILTPPGPSG
>NC_011961.1|WP_012642556.1|396752_397160_+|hypothetical-protein
MAAERAALFLATRLPTDPKEAKRRPHPESELADQEARLRELAARECYHVTRVFSEILPEFPEQRPGLKALRTAMWLREIDVILVPSPECLYRDPERLKAFLIEARTLGERVEFLEVPPLYAWVVKEYGWPREWSR
>NC_011961.1|WP_012642960.1|396174_396699_+|deoxyuridine-5'-triphosphate-nucleotidohydrolase
MSERDGVLMREQLAALLAADPPLLRDLPAVEAQLQPHGIDLTVWSVARFASAGQVGEIDEERRLPELEVVEPDRDGWWELEPGPYLVRFTETVTLPPDCMAYARPRSSLLRCGVAVHTAVWDAGYSGQGVALLVVYNPKGFRLRRCARIAQLVLHRLERPVSEGYRGMYQGERG
>NC_011961.1|WP_012643272.1|394932_396174_+|amidohydrolase/deacetylase-family-metallohydrolase
MGPAERERFDTLILGGEVIDPANQRFGRFDIGIREGRIVRVARSLADAIAEQVIDARGQIVTPGLIDLHTHVYWGATYWGIEADPIAARTGVTTWLDVGSAGAYTFPGFRRYIVEPSRVRILALLNLSSIGLVAPTWEFANLDYCDLELAAAMIEANRDVILGVKARIDANTTRGVGIRPLELARELADQLGLPLMVHIGNGPPSIDEVAALLRPGDILTHCFTGGTMRILTPDGRVHPRIRELHERGLVLDIGHGAGSFSFEVAERLLAEGIVPDVISSDIHQLAIQGPMFDLPTTLSKFLALGLSLAEVIERATVRPAKIIGRPELGSLAEGTPADIALFQVVEGMFTFYDVAMQARSGDRLLVNTLTMVDGRIVPRQEPSALHPWAQLPEHQRPIVQIGHPYRVMQARGG
>NC_011961.1|WP_012642641.1|406542_407733_+|DUF11-domain-containing-protein
MRTTTRAGCRSKTAVIVLVAVAWLLAACEGTLVPLVTPSPLAERGVTPSPAVPSSPVPPSPPLVQASPTAIVSTPAVPSETATAEATPALVPTVTVRPAPTVASRPTSPAPSTGTPILTRPVVGEPGETPTPVGTCDLALDKTVSPLAVGRTVVVTLTVQQRGTAVCPTGALVSDPLPAGFQQESTIRIVETGGTGAWQCDGTTCRAGEPLPPGYSATFTFTVSGEPGSAAENCALVSVASDADPANDARCVTLGPFPTPPVAPTPSPVACLFGFEKAIRLGGPITGGQTGSATVTIRIRNAGPEECTVRWPEFVVVDVLPAGMSLSGAVRLNVAAWSCGTSERAFQCSGPPPQPGSEVIVTVDVAVAAEAERAVNCATLDPVGAQACAVPSYSRG
>NC_011961.1|WP_012642931.1|408226_408409_+|SelT/SelW/SelH-family-protein
MELLLDKYELQIGEIALVPSSGGRFEVTVDGELVFSKLAQKRFPEDEELIELVGARISAN
>NC_011961.1|WP_012642758.1|408460_409684_+|tRNA-4-thiouridine(8)-synthase-ThiI
MSERFTPLVIVRVHELALKGQNRPFFKRALYENLSYALRDLPVSRIQERALRFIVRLTDPAAWPEVSERLRWVFGVANFSLGLETALTVEAMERGLHELLDRYGPPQGSFRIRVKRTNKSFPLTSPELERELGRLVQKRTGAPVDLSEPDVTYTVEVLYDRALVSGDALPGPGGLPIGVSGRVVALLSGGFDSPVAAYRLMKRGCFVTFVHFHAYPYVRPISIEKAVELARHLSRFQPPKNRLIVVPIGDAQRVIALAAEPSLRVVLYRRLMLRIATAIAHEEGAGALVTGESLGQVASQTLENMRAIGAVTDLPLLRPLVGNNKDEIIAEAVRIGTEPISRVPDDDCCTVFVPLHPATRVTVEQAEAAEQAYDVAALVEQCLARRTVYEGDPFRWDPLMALAAATA
>NC_011961.1|WP_081433498.1|409623_410466_-|PrsW-family-intramembrane-metalloprotease
MRSTLTHGWIQVLFGGLILFYALNNVYQATGNPNFVPSLLVLGAFLVPVVLVLWVYEHPLPERIPPSAVAWNFLWGGALGVIVAGMLEYDTYRTLGFLPLLAVGLIEEAAKLIAPLVFFLRWRYRSEMAGLLFGLASGMGFAALETLGYAFTALIASRGNVELAEFVLLVRGFLSPAGHAAWTALVTATLWRERVHHGHAGLTRATLGAYLLAVALHTLWDTFQIKSSVTRVDWLSIEVLSALVALSSVTLLARRYREARRQAVAAASAMSGSQRNGSPS
>NC_011961.1|WP_012643129.1|410707_410983_-|hypothetical-protein
MNKLAARLLDQLKKHRFRPVMLSGDGYVLEIVPYHGKIEAGFTLWRLEGGELVPVASGHTENGHLLTAEGFALQLPADVERTMLTLLSRKR
>NC_011961.1|WP_012642456.1|411195_412803_-|flotillin-family-protein
MNFPLPDVFQALFAILLVFLAFAALLAIVSRNIIKVPPNMVAVFSGRRRTIVDPTTGERRTVGYRLIKGGSSIRIPIVERVDFLSLNVMTIPLKIASAYTKEGVPVSVDAVANVKIGSDDQMLMNAIERFLGMEQDQIRSVIFQTLEGHLRSILGTLTVEQINADRQAFAQRLAAESAQDLSRMGIEIDVLTIQQISDPQGYLDALGQRRTAEVKRDAEVGKAEAERDARVRRAQALQQAAIAEAMAEAEIAAAQKEAEVRKARYEAEVQAERARAAQAGPLAEAEARRQVVVAEQQVELARTEAAIAVQETEARRREKELEATVLKSAEAERRATIIRAEAEREATILRAEGERQAQVVRAEAEARERELVGTGEAARIRQIGQAEAEAKKALAEALQAELFAQAEGQRAALLAEADGKRALADALNHYGPIAMQLLMYQAFVEQLPRIVEAAARPLAQVERVVVFDSGAAGDGTSALGRYATQLPVIVQQLVEGFSAVTGVDLTTAVRDRLAATPAADGAASDPPGPDPASTT
>NC_011961.1|WP_012642840.1|412799_413354_-|NfeD-family-protein
MSLLAITYLVIALVGLAFLALTVLIGEIADIFDVGDDGIGPFNGKVIAVALTAFGATGLLMTFFRVPVLWGALAAAGSGLAFGLAAWLLVALLYRQQATTEFSLQDLLGRTGEVTVPIAADQPGYVVISGPTGTRQYLARSSRGIPIPAGQLVRVSGLAGTVLLVEPLQQATAVEGRDARGESR
>NC_011961.1|WP_012643070.1|413651_415190_-|ethanolamine-permease
MGEQPTIERGGVRYERVGQEYLEQRKLRRHANWVLLWALGVGAVISGDFFGWNFGLSAGGFGGLLIATVLMALMYLFMVYSIAELTTALPHAGGFYSFTRSAFGPWGGYLVGVTDTIEYVITPAVIVVGIGGYMNTLFPQVPVWLWWLLFYMVFVAINIAGVEITLRVGLVVTILAMLILVIFYIGAVASGAFSWDLVFNIEPNPDRAGSSTFLPQGFFGIFAAIPFAIWFYLAIEELPLAAEETHDVVRDMPKGLITGIFTLLALSVFTLVFNSGVNGGAKQIGESSAPLADGFQAVFGAGATTTVLTLIALTGLIASFHTIIYAYGRVIFALSRAGYYPRFLSVTSPKTHTPHRALIAGAIIGLLCAVIIDQFGTGIVGAALLNMAVFGAVISYAAVMLAYIRLKITRPDLPRPYKSPFGIPGAAIGAALAILALFATFSIQDYRPGVLGVAFFLVIALLYFALYSRHRLVAQAPEEEVALILEAEKELKHQYVELESEEERRRMEEQAR
>NC_011961.1|WP_012642487.1|415220_416003_-|SDR-family-oxidoreductase
MGNRLAGKVCIITGAGSGIGREAAILFAQEGGKVVVADVNVAGGEETVRLIREAGGEAIFVRTDVTKAAEVEALVRTAEDTYGKLDVMFNNAGIFPDEDGSVVDTPEEVWDRVMAVNLKGVFLGCKYAIPAMLRAGGGSIINTASFVALMGAAVPQIAYTASKGGVLAMTREIAIEFARKNIRANALCPGPVDTPLLRSILSDPAKRQRRLVHIPMGRFAQAREVAQAALFLASDESSYVTATAFLVDGGITAAYITPEE
>NC_011961.1|WP_012642857.1|416017_417403_-|glutamine-synthetase
MSEHTTGLLTLDELEHLVASGEIDTVINALCDMQGRLMGKRVRADFFLEHVRAHGTHFCTYLLGTDMEMTTPGGYRLMNWETGYGDWVARPDFATLRRIPWLEGTALVLADAVDEETGELIPVAPRTILRRQVERAAAMGFRIMMASELEFYLLKDSYDEAYEKGYRGLHPYGWYNEDYHLFQGTKAEPIYRQIRNLMTAAGIPIEFSKGEAAAGQHEINIHYAEALESADRAVLFKHGVKEIAYLNGVAVTFMAKPHHTWTGSSSHIHLSIWDSAGERNLFYEADGQPYHMSKLMQHALAGLIAHARELSLFVASNVNSYKRYAVASWAPVNVVWGRDNRTCGFRIVGHGQSLRVESRLPGADANPYLAYAAMIAAALDGIERELPLPPEYRGNAYEARDVVRVPRTLAEAMVEFERSELARRAFGELVVEHYVNMARVEQETFDAVVTDWELYRYFERG

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Crispr_ID: NC_011961_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011961_3

742512-742609

Orphan

Consensus_repeat	Method
GCAACTGGACGAATTAAGGAGGCGTGCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011961_3

>merge|NC_011961|3|742512-742609|CRISPRCasFinder
GCAACTGGACGAATTAAGGAGGCGTGCAGCGTACTCTTCAGCGAGTTCCTCTTTTTTGGTAAGCCAGGCAACTCGACGAATTAAGGAGGCGTGCAGCG

>NC_011961|3|3|742512-742609|CRISPRCasFinder
GCAACTGGACGAATTAAGGAGGCGTGCAGCG	TACTCTTCAGCGAGTTCCTCTTTTTTGGTAAGCCAG
GCAACTCGACGAATTAAGGAGGCGTGCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011961.1\|WP_041437792.1\|735239_736169_+\|arginase-family-protein	unknown	unknown	gnl\|CDD\|212537
NC_011961.1\|WP_012643079.1\|745428_746211_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NC_011961.1\|WP_012642835.1\|732199_733465_+\|arsenical-pump-membrane-protein	unknown	unknown	gnl\|CDD\|238538
NC_011961.1\|WP_012642946.1\|742222_742387_+\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012642658.1\|736732_737317_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NC_011961.1\|WP_012643092.1\|743059_743500_+\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012642502.1\|739478_740294_-\|DUF4397-domain-containing-protein	unknown	unknown	gnl\|CDD\|379570
NC_011961.1\|WP_012642937.1\|742705_743047_+\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_143714823.1\|744097_744301_+\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012643132.1\|749140_749914_-\|LamB/YcsF-family-protein	unknown	unknown	gnl\|CDD\|377121
NC_011961.1\|WP_012642515.1\|737300_738623_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|234607
NC_011961.1\|WP_143714820.1\|733469_734729_-\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366747
NC_011961.1\|WP_012642919.1\|747414_748305_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225367
NC_011961.1\|WP_012642427.1\|738619_739387_-\|class-F-sortase	unknown	unknown	gnl\|CDD\|320678
NC_011961.1\|WP_012643201.1\|740813_741818_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176216
NC_011961.1\|WP_012642492.1\|748485_749091_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
NC_011961.1\|WP_012642863.1\|746203_747190_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NC_011961.1\|WP_012642686.1\|744300_744477_+\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012643019.1\|736185_736560_+\|hypothetical-protein	unknown	unknown	unknown
NC_011961.1\|WP_012642540.1\|743692_744040_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NC_011961.1\|WP_041437792.1\|735239_736169_+\|arginase-family-protein	gnl\|CDD\|212537	cd11589, Agmatinase_like_1, Agmatinase and related proteins. This family includes known and predicted bacterial agmatinase (agmatine ureohydrolase; AUH; SpeB; EC=3.5.3.11), a binuclear manganese metalloenzyme, belonging to the ureohydrolase superfamily. It is a key enzyme in the synthesis of polyamine putrescine; it catalyzes hydrolysis of agmatine to yield urea and putrescine, the precursor for biosynthesis of higher polyamines, spermidine, and spermine. Agmatinase from Deinococcus radiodurans shows approximately 33% of sequence identity to human mitochondrial agmatinase. An analysis of the evolutionary relationship among ureohydrolase superfamily enzymes indicates the pathway involving arginine decarboxylase and agmatinase evolved earlier than the arginase pathway of polyamine.	4.09502e-137
NC_011961.1\|WP_012643079.1\|745428_746211_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.96571e-62
NC_011961.1\|WP_012642835.1\|732199_733465_+\|arsenical-pump-membrane-protein	gnl\|CDD\|238538	cd01118, ArsB_permease, Anion permease ArsB. These permeases have been shown to export arsenate and antimonite in eubacteria and archaea. A typical ArsB permease contains 8-13 transmembrane helices and can function either independently as a chemiosmotic transporter or as a channel-forming subunit of an ATP-driven anion pump (ArsAB). The ArsAB complex is similar in many ways to ATP-binding cassette transporters, which have two groups of six transmembrane-spanning helical segments and two nucleotide-binding domains. The ArsB proteins belong to the ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life.	1.26283e-76
NC_011961.1\|WP_012642658.1\|736732_737317_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.82885e-33
NC_011961.1\|WP_012642919.1\|747414_748305_+\|hypothetical-protein	gnl\|CDD\|225367	COG2810, COG2810, Predicted type IV restriction endonuclease [Defense mechanisms].	1.84736e-15
NC_011961.1\|WP_012642502.1\|739478_740294_-\|DUF4397-domain-containing-protein	gnl\|CDD\|379570	pfam14344, DUF4397, Domain of unknown function (DUF4397). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 120 amino acids in length.	7.03353e-25
NC_011961.1\|WP_012643132.1\|749140_749914_-\|LamB/YcsF-family-protein	gnl\|CDD\|377121	pfam03746, LamB_YcsF, LamB/YcsF family. This family includes LamB. The lam locus of Aspergillus nidulans consists of two divergently transcribed genes, lamA and lamB, involved in the utilisation of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression. The exact molecular function of the proteins in this family is unknown.	9.30616e-127
NC_011961.1\|WP_012642515.1\|737300_738623_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	1.27668e-164
NC_011961.1\|WP_143714820.1\|733469_734729_-\|alkaline-phosphatase-family-protein	gnl\|CDD\|366747	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase. This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyze the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum.	7.33106e-33
NC_011961.1\|WP_012642492.1\|748485_749091_-\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	2.03646e-46
NC_011961.1\|WP_012642427.1\|738619_739387_-\|class-F-sortase	gnl\|CDD\|320678	cd05829, Sortase_F, Sortase domain found in the class F family of sortases. Class F sortases are mainly present in Actinobacteria, Chlorobacteria and Firmicutes. Their functions are largely unknown.	2.6338e-47
NC_011961.1\|WP_012643201.1\|740813_741818_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176216	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	6.90829e-147
NC_011961.1\|WP_012642863.1\|746203_747190_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	2.14993e-48

>NC_011961.1|WP_012642946.1|742222_742387_+|hypothetical-protein
MCRAPERRVRDRASATRRSFLVLLLVLAIGLFPPLSVNAGSWVVASAYREDKVT
>NC_011961.1|WP_012643201.1|740813_741818_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MRAARYFGPHDFRLVEIDRPVPERGEVLLRVRAAGLCHSDLHIIFDELGGYPIPAPLTLGHEICGEAVERGEGVTGIEIGRRYVVFGPVGCGNCRWCRSGRDNLCTESRWIGIARDGGYAEYVTVPAQALVAVPDTVSDAEAAVATDAVLTSYHALLTVGRLQPGEGVAIIGVGGLGLNAVQIASAFGAVVLALDIQERKLELARQHGAAIALDSRQLDPQNPPLDRPITLVADFVGTDQTKLLAQQLVARGGRIVLVGLGSVGGPLLGLRAVADEIAVLGSFWGTRQELATVLDLIARGIIRPRVETHPLDEILTWVERLRAGEVESRVALVP
>NC_011961.1|WP_012642502.1|739478_740294_-|DUF4397-domain-containing-protein
MRQLITVVITLALLAAVPFTVLAAGHEKAQLTVVHGVPDLVVDVYANDAKVLSNFTFGTVTDPLALDPGTYKLAIRPAGADPASAPVLSAEATLAAGQNASVVAHLDANGQPRLSIFVNDTSPVASGKGRLIVRHTAQAPAVDVRAGGAVVFANLANPNEAKADVDAKTYSVDLAPAGQAQAVFGPVDLPVAAGAATIVYAIGSIEKGSFRLVTQVITGLGAPPSHVGTGGGSAANATLPLTVAVLAALLVLAGSAALVRVPVRIERRNLR
>NC_011961.1|WP_012642427.1|738619_739387_-|class-F-sortase
MTASTRRRKALGTTALLLAMMLIGGWLNASSHALLLGPVGVSPRVPEADALRTEAWRLVGQAIPSEEVAVLPLPETWIPPRHLPSPAVEEPSPVREPLLVMPRLVEPVRIRIPSIGVDAPIQAVDLAPDGSLAISDDGDTVFWYRGSAYPGWPGRALLAGHLDRVEGGWAVFAGLHRLQPGSVVLLELADGRVLHYTVTGQARVASTDLPAELLTGENSSELVLITCAGWWDPQRRVYSDNLLVFTRFDGLAPLS
>NC_011961.1|WP_012642515.1|737300_738623_+|aspartate-aminotransferase-family-protein
MTKTPKATRTEWLRRAREALGGAVTSFVLPESHAIVLSHGLGSRVVDVDGRDYIDYVLGSGPLILGHAHPAIVEAVSRQAALGSTFYTLTPAAIELAEEIIRAVPCAEQIKFVSTGTEATFHALRIARAYTGRTKILKFEGAFHGVHDYALISAFPAVPSDLPKGQPDSAGIPPQVAETVLVSRWNDLDVTRALIEQHAEELAAVICEPLQRALPPAPGFLNGLRELTERYGILLIFDEVVTGFRLAYGGAQERYGVVPDLATFGKALSGGYPLAAIAGRREIMALTDPTRRSRGEPVAHLSGTLNGNPLAAAAGLATLHVLRQPGVYDYLYRISEQLRTGLRELAAARGIPLQVIGEGPVLQIVFAEEEPRDYAALLRADRERAVRFGLACLERGLFVNPGEKLYLSLAHSEADIARTLEIFSAALDTVLSDANATASD
>NC_011961.1|WP_012642658.1|736732_737317_+|Lrp/AsnC-family-transcriptional-regulator
MVRPIDALDRSIIRLLQEDSRMPSAEIARRLGVAERTVRARINRLVEDGIVKLVAIVNPSALGYDVTADIFLEVEPGRLEEVAQQLVAMEEVAYVGLTTGERDISIQVFVPSVDALYRFITEKLQRIPGVIGTTTYVVPRVLKWLHNWSLPSESTAPAGRRAVRRRRRGRAGRAQEEAAISATSPAGANSDENT
>NC_011961.1|WP_012643019.1|736185_736560_+|hypothetical-protein
MRRWSPEFARHRTASQPLSGTWLILGSGFLIVGLLWISLAYRFYLSAAPRALLIALVMAFLHAVSSMLNFRRGLSAFLLSLAAVLLGIVGAFIVRVYFLIGIEVVAGVVLVLGRSTLLSSTGRR
>NC_011961.1|WP_041437792.1|735239_736169_+|arginase-family-protein
MTEPAPSTFVGLPRLDELPRPPHVTFLGVPYGRPYRGLGPELPSATAPAALRAASLAFQPYYRNVDVDFGGDLFAGREVLLADAGDVRLVPGDHTGNLERITTVVRTLLRAGTVPIVLGGDHAVTVPVLQAYAEHTGLCIVQIDAHLDWRDEVDGIREGFSSPMRRASELSSVHAMIQIGLRGAGSGREGEFAAARTWGSVLVPARTVHREGIEWVLDRLPQASAYYVTLDADGIDPGIMPGVNAPAPGGLTYWQVFDLLCGIAHRGQIVGFDLTELAPARDPSGVTMAHAVRILLVLIGALAHAGQFG
>NC_011961.1|WP_143714820.1|733469_734729_-|alkaline-phosphatase-family-protein
MDEQGNAEGLVREATRFSAERPHWVRPSYDGFGLVNLPWSILASLGGELEGQPVSPAIWPSELADGIEAVLLVIIDGLGYERLQRALAEGETPGLARLAREGILFPLTSVFPSTTVAALTTLATGYPPSQHGLLGFTVFLREFGMLSNLLLWSPLGRFPSYASLGLEPRSFLPVPTIAERAARAGIHATVVSPEAFRDTPLTKMQAAGAEFRGYRTPGEFVAQVHAALVRPGRQLVTAYWDTLDTLGHFVGPESAAWRIEFRQFDRLLADELLARLPRRNLLVVITADHGMVSLDPARQRPLTDPALLAELRVPPAGERRAVYLHPVTGAEESVQARLTALAGEDGWVSSRDELFAQGLFGPLPYHPEALHRVGELVLIAVEGAGFPWDPPGASSRVFLGAHAGLEAVEQLVPCLIWRP
>NC_011961.1|WP_012642835.1|732199_733465_+|arsenical-pump-membrane-protein
MQVVLGLGIFAATLIGIFARPARLSEAHAALLGALAMLLTGIVSPETAAAALYHEWNVYLFFLGLMVTTALAERAGVFTMLARAAAIWANGSSRRLYLMLFLIGALVTAFLSNDATALLLTPVVATLVIQLRLSPVPYLFATTFIADTASFLLPVSNPINVLLLGERIDLPTFFRFLLAPALFAILANYIIFAWWFRHDLRMVYDPARLPVLDSRRQQTARLTLSGLAVLALVEVTAAWYHLPLGPVAVLGACALALLAWRIGQLDWKSVVRSISWSLFGFLTGMVIVVRGLTELGLTERFGTWLLALGAGSTLRAILVTAFGTALGANLINNVPMALVMRAALETSAPATLPQEALRYAALLGADLGPNVTTVGSLATILWVLLLRRYGITVSVRQYILLGFLLVPLLLAAGSLAIWLQL
>NC_011961.1|WP_012642937.1|742705_743047_+|hypothetical-protein
MDPLSGEELRHARVYQRTELERETVSYRAVAGLLALALAFGWYWTAERGGTSRPLADLLVPLMSPAGWSLQAAPVEPVAAFPLSGAAPATASAYREGARVVWQLAGQRQPEFE
>NC_011961.1|WP_012643092.1|743059_743500_+|hypothetical-protein
MTLYRFADAKSAAAAADALATQNAAERAPAGLTERTVVEVDGWPLVVRRALTGQKPDQLRGWSLVTYELAPEALPAAHGAIGVPVEVESLRAHELTLVLVSGETVASVSVHANNRAVPVLRDLLVQVCDRLALERTVLDRVPLPAD
>NC_011961.1|WP_012642540.1|743692_744040_+|hypothetical-protein
MDRSWRQLAAVLAALVLFTVLPLGVSAKGDEVSLAEAVALRQQLVTAPDFEVAWRALTQAQQRAIESIDRQPVIETGSTSSGIGDFAVAAAGCWTRMNYVRAVAALLGYVLWSYE
>NC_011961.1|WP_143714823.1|744097_744301_+|hypothetical-protein
MRVNDPLHRYLGESGYGITGGVGQPFVRVYRSGKICFLPQLNCPYVRYPYVTLYAFGNGGWSSEVGT
>NC_011961.1|WP_012642686.1|744300_744477_+|hypothetical-protein
MSSQSPQGIPWEVVWIRRLVLVLLVVLILFLLVALAAFVNAAFAHLECGCGAPAAAGG
>NC_011961.1|WP_012643079.1|745428_746211_+|ParA-family-protein
MTPVIAFFNQKGGTAKTTSTLNVGAALAERGYRVLSLDLDPQASLTMALGIDIARLEVSVYDLLVEDPLPLSETIVATRIAGFDLVPSHPDLAAAELELLNALERERRLAHALAAAEPLPYDYVLIDSPPALNILSVNILVAATALVIPIEPHPLSLMVLRRLFETVNRVRRLNPRLAVLGFLPTKVHHSSRLVADMLATLRERFPDLPLLPSIPLSIKGAEAVAEHTSILQYQPRSSLAAAYRQAAAAIVELVGSTSRV
>NC_011961.1|WP_012642863.1|746203_747190_+|ParB/RepB/Spo0J-family-partition-protein
MSESPLSPTTRRRRFTVDDLLADTSPQARGTRELAEAREIALDRIEPDPDQPRRTFDPERLEELAASIRQQGVLQPIAVRYDATRDRYVIIHGERRWRAAQLAGLPTIPAIVRQVSDEQRLIQQLMENILREDLNALDRAAALRRLKQQLGDVPWEQVAETVGIKRSRLFQLLATEKLPEPVQEAIRAGRLSEKQTRPLQGLPEPLQIAVAQLIEQDGLPQAEIERLARTLRERTDLALLDPRELLPQLRQFIRPIGSATPRPARSTRRSSRAVQLVTALERLRQLLETTDPATLDRAEREVITEAFRRLGSSLHRWRTALGGAPESS
>NC_011961.1|WP_012642919.1|747414_748305_+|hypothetical-protein
MIDDLCQVLEQLRDRLQAQKSLLESNEAQTRVSLIDPLLRALGWPTDDPTAVQVEVQAGSGRADYLLRSGDQTIVVLEVKKLGEKLDIAHSAAVSYAWELLRQGQAPRYVGVSDGRRWLLYEPQQLKQPRYALDLADSQRSIPALALAFTEALWRRLYERIIPPPPPPPEWIPLTALRPHPGDPPPSRIRFPDGSERDLKTWKSLLLEVAEWLVAQGKLTSVACPVPMGPKQYLVNTEPIHPTGRSFVSKKRLSNGLWLNLNLSARDVVRSAQSLLNHFQIAPQQVLVSLRHGPPA
>NC_011961.1|WP_012642492.1|748485_749091_-|biotin-transporter-BioY
MSSVVLADLALPRSWREHAGVRLAANVVLVVAGSLLTALAAQVSIPLPFTPVPITGQTFAVLLVGAALGSRRGAASMALYVAQGLAGLPVFAGGKAGLAVLLGPTGGYLIGFIAAAFVTGWLAERGWDRRPLTTALAMVFGNLVIYLFGVSWLAVFVGISKAPLLGMVPFIPGDIVKIVLATVALPGAWWVVRRLGSGTMS
>NC_011961.1|WP_012643132.1|749140_749914_-|LamB/YcsF-family-protein
MARVIDINCDMGESFGRWTLGNDAALMPYITSANIACGWHAGDPAVMRQTVELAVAHGVGIGAHVGFPDLLGFGRRRIDVTPQEVYDYTLYQAGALQAFAQAAGARLQHVKPHGAFYVMCSQNEELCEALCRAIKALGNGIALVMMGDIAPRVAASVGIPMAREGYIDLNYNRQGQLVLERRKQAWDPEEVARRAVELVLHGRIPTIEGETLQAEVETICIHGDAPNAPEIAQRVRQRLEEAGVVVRPLGAGMTATA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011961_1	1.1\|122047\|19\|NC_011961\|CRISPRCasFinder	122047-122065	19	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	122047-122065	0	1.0
NC_011961_1	1.2\|122089\|40\|NC_011961\|CRISPRCasFinder	122089-122128	40	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	122089-122128	0	1.0
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	405790-405818	0	1.0
NC_011961_3	3.1\|742543\|36\|NC_011961\|CRISPRCasFinder	742543-742578	36	NC_011961	Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence	742543-742578	0	1.0
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	NZ_CP028969	Aminobacter sp. MSH1 plasmid pUSP1, complete sequence	209800-209828	5	0.828
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	NZ_CP026266	Aminobacter sp. MSH1 plasmid pAM01, complete sequence	207094-207122	5	0.828
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1124028-1124056	6	0.793
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	NZ_CP013265	Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence	203620-203648	7	0.759
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	496720-496748	7	0.759
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	NZ_CP010410	Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence	308651-308679	7	0.759
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	MK660714	Arthrobacter phage MrGloopy, complete genome	35670-35698	7	0.759
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	MK112538	Arthrobacter phage Carpal, complete genome	35523-35551	7	0.759
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	MK279892	Arthrobacter phage Wawa, complete genome	35543-35571	7	0.759
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	NZ_CP012182	Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence	333747-333775	8	0.724
NC_011961_2	2.1\|405790\|29\|NC_011961\|CRISPRCasFinder	405790-405818	29	NZ_CP012185	Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence	714804-714832	8	0.724

1. spacer 1.1|122047|19|NC_011961|CRISPRCasFinder matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gggccagatcgctgccctg	CRISPR spacer
gggccagatcgctgccctg	Protospacer
*******************

2. spacer 1.2|122089|40|NC_011961|CRISPRCasFinder matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gcagcaacaaacagccacgaccgagcagattcgccaactt	CRISPR spacer
gcagcaacaaacagccacgaccgagcagattcgccaactt	Protospacer
****************************************

3. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
cgctgccgacgatcgttctgccgacgccg	Protospacer
*****************************

4. spacer 3.1|742543|36|NC_011961|CRISPRCasFinder matches to NC_011961 (Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

tactcttcagcgagttcctcttttttggtaagccag	CRISPR spacer
tactcttcagcgagttcctcttttttggtaagccag	Protospacer
************************************

5. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to NZ_CP028969 (Aminobacter sp. MSH1 plasmid pUSP1, complete sequence) position: , mismatch: 5, identity: 0.828

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
cgctgccgacgatcgtcctgctgatcctg	Protospacer
****************.****.**. *.*

6. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to NZ_CP026266 (Aminobacter sp. MSH1 plasmid pAM01, complete sequence) position: , mismatch: 5, identity: 0.828

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
cgctgccgacgatcgtcctgctgatcctg	Protospacer
****************.****.**. *.*

7. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 6, identity: 0.793

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
cgctgccgacgatcgtgctgctcatcctg	Protospacer
**************** ****. *. *.*

8. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to NZ_CP013265 (Sphingobium baderi strain DE-13 plasmid pDE1, complete sequence) position: , mismatch: 7, identity: 0.759

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
ttgcgccgacgatcgtactgccgccgccc	Protospacer
.  .************ ****** ****

9. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 7, identity: 0.759

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
gaaggtcgacgatcgttttgccgacgtcg	Protospacer
 .  *.***********.********.**

10. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.759

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
tcttgccgtcgatcgtgctgccgacgtcc	Protospacer
. .***** ******* *********.*

11. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to MK660714 (Arthrobacter phage MrGloopy, complete genome) position: , mismatch: 7, identity: 0.759

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
acctcgcgacgatccttctgccgacgctc	Protospacer
  **  ******** ************.

12. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to MK112538 (Arthrobacter phage Carpal, complete genome) position: , mismatch: 7, identity: 0.759

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
acctcgcgacgatccttctgccgacgctc	Protospacer
  **  ******** ************.

13. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to MK279892 (Arthrobacter phage Wawa, complete genome) position: , mismatch: 7, identity: 0.759

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
acctcgcgacgatccttctgccgacgctc	Protospacer
  **  ******** ************.

14. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to NZ_CP012182 (Pseudonocardia sp. EC080610-09 plasmid pBCI2-1, complete sequence) position: , mismatch: 8, identity: 0.724

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
tcctgacgacgatcgtgctgccgaccgtc	Protospacer
. *** ********** ********  .

15. spacer 2.1|405790|29|NC_011961|CRISPRCasFinder matches to NZ_CP012185 (Pseudonocardia sp. EC080619-01 plasmid pBCI1-2, complete sequence) position: , mismatch: 8, identity: 0.724

cgctgccgacgatcgttctgccgacgccg	CRISPR spacer
tcctgacgacgatcgtgctgccgaccgtc	Protospacer
. *** ********** ********  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

594913 : 603073

Bacillus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041437335.1\|594913_595732_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.3e-19	34.0
WP_012643088.1\|595796_596801_-	sigma-70 family RNA polymerase sigma factor	F4YCU2	Synechococcus_phage	1.5e-41	38.1
WP_012643246.1\|596903_598061_-	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	4.3e-21	26.0
WP_012642673.1\|598178_599618_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	7.2e-26	31.4
WP_012642567.1\|599624_600302_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-35	37.4
WP_012642848.1\|600452_601259_+	YceI family protein	NA	NA	NA	NA
WP_012642814.1\|601255_602374_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_012643133.1\|602419_603073_+	sigma-70 family RNA polymerase sigma factor	A0A0F6TH34	Sinorhizobium_phage	1.3e-06	27.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011959

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NC_011961

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection