CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NC_011662	Thauera sp. MZ1T, complete sequence	13 crisprs	PrimPol,csa3,DEDDh,RT,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG	0	29	7	0
NC_011667	Thauera sp. MZ1T plasmid pTha01, complete sequence	0 crisprs	DEDDh	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NC_011662_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_1

70222-70337

Orphan

Consensus_repeat	Method
GGAGCGACGCAAGTCGCGATCGGCCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011662_1

>merge|NC_011662|1|70222-70337|CRISPRCasFinder
GGAGCGACGCAAGTCGCGATCGGCCGGCGCGGCGGTTTTCCGTAGGAGCGACGCAAGTCGCGATCGGCCTGCACGGCGGTTTTCCGTGGGAGCGACGCGAGTCGCGATCGGCCGGC

>NC_011662|1|1|70222-70337|CRISPRCasFinder
GGAGCGACGCAAGTCGCGATCGGCCGGC	GCGGCGGTTTTCCGTAGGAGCGACGCAAGTCGCGATCGGCCTGCACGGCGGTTTTCCGTG
GGAGCGACGCGAGTCGCGATCGGCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_012584212.1\|62796_63351_+\|DUF2760-domain-containing-protein	unknown	unknown	gnl\|CDD\|378497
NC_011662.2\|WP_012584213.1\|63347_65195_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212667
NC_011662.2\|WP_012584208.1\|57562_58888_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227261
NC_011662.2\|WP_012584222.1\|77382_78339_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182077
NC_011662.2\|WP_012584223.1\|78973_79990_+\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NC_011662.2\|WP_012584224.1\|80572_82225_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|293734
NC_011662.2\|WP_012584215.1\|68097_68412_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NC_011662.2\|WP_012584214.1\|65205_68034_+\|hsp70-family-protein	unknown	unknown	gnl\|CDD\|378872
NC_011662.2\|WP_004312777.1\|78461_78731_-\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012584217.1\|69596_70118_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NC_011662.2\|WP_004312780.1\|80046_80391_+\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012584219.1\|73150_74407_+\|OprD-family-porin	unknown	unknown	gnl\|CDD\|335381
NC_011662.2\|WP_012584220.1\|74513_75311_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|377877
NC_011662.2\|WP_012584211.1\|61358_62705_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|376672
NC_011662.2\|WP_012584216.1\|68721_69600_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NC_011662.2\|WP_004312771.1\|75537_76191_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NC_011662.2\|WP_012584210.1\|60447_61029_+\|DUF4276-family-protein	unknown	unknown	gnl\|CDD\|379470
NC_011662.2\|WP_012584218.1\|70448_72623_-\|catalase/peroxidase-HPI	unknown	unknown	gnl\|CDD\|237891
NC_011662.2\|WP_012584209.1\|59257_60451_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226984
NC_011662.2\|WP_012584221.1\|76253_77348_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|379231

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_012584212.1\|62796_63351_+\|DUF2760-domain-containing-protein	gnl\|CDD\|378497	pfam10816, DUF2760, Domain of unknown function (DUF2760). This is a bacterial family of uncharacterized proteins.	4.46104e-79
NC_011662.2\|WP_012584213.1\|63347_65195_+\|Hsp70-family-protein	gnl\|CDD\|212667	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family. HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs.	7.46453e-89
NC_011662.2\|WP_012584208.1\|57562_58888_+\|hypothetical-protein	gnl\|CDD\|227261	COG4924, COG4924, Uncharacterized protein conserved in bacteria [Function unknown].	1.74858e-91
NC_011662.2\|WP_012584222.1\|77382_78339_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182077	PRK09791, PRK09791, LysR family transcriptional regulator.	9.16148e-50
NC_011662.2\|WP_012584224.1\|80572_82225_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|293734	cd16010, iPGM, 2 3 bisphosphoglycerate independent phosphoglycerate mutase iPGM. The 2,3-diphosphoglycerate- independent phosphoglycerate mutase (iPGM) catalyzes the interconversion of 3-phosphoglycerate (3PGA) and 2-phosphoglycerate (2PGA). They are the predominant PGM in plants and some other bacteria, including endospore forming Gram-positive bacteria and their close relatives. The two steps catalysis is a phosphatase reaction removing the phosphate from 2- or 3-phosphoglycerate, generating an enzyme-bound phosphoserine intermediate, followed by a phosphotransferase reaction as the phosphate is transferred from the enzyme back to the glycerate moiety. The iPGM exists as a dimer, each monomer binding 2 magnesium atoms, which are essential for enzymatic activity.	0
NC_011662.2\|WP_012584215.1\|68097_68412_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	4.82527e-65
NC_011662.2\|WP_012584214.1\|65205_68034_+\|hsp70-family-protein	gnl\|CDD\|378872	pfam12531, DUF3731, DNA-K related protein. This domain family is found in bacteria, and is approximately 250 amino acids in length. There are two conserved sequence motifs: RPG and WRR. The proteins in this family are frequently annotated as DNA-K related proteins however there is little accompanying literature to confirm this.	1.29469e-125
NC_011662.2\|WP_012584223.1\|78973_79990_+\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	4.99894e-60
NC_011662.2\|WP_012584217.1\|69596_70118_+\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	8.45041e-24
NC_011662.2\|WP_012584219.1\|73150_74407_+\|OprD-family-porin	gnl\|CDD\|335381	pfam03573, OprD, outer membrane porin, OprD family. This family includes outer membrane proteins related to OprD. OprD has been described as a serine type peptidase. However the proposed catalytic residues are not conserved suggesting that many of these proteins are not peptidases.	4.1665e-148
NC_011662.2\|WP_012584220.1\|74513_75311_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|377877	pfam07589, VPEP, PEP-CTERM motif. This motif has been identified in a wide range of bacteria at their C-terminus. It has been suggested that this is a protein sorting signal. Based on phylogenetic profiling it has been suggested that the EpsH family of proteins mediate this function.	1.01278e-06
NC_011662.2\|WP_012584211.1\|61358_62705_+\|NYN-domain-containing-protein	gnl\|CDD\|376672	pfam01936, NYN, NYN domain. These domains are found in the eukaryotic proteins typified by the Nedd4-binding protein 1 and the bacterial YacP-like proteins (Nedd4-BP1, YacP nucleases; NYN domains). The NYN domain shares a common protein fold with two other previously characterized groups of nucleases, namely the PIN (PilT N-terminal) and FLAP/5' --> 3' exonuclease superfamilies. These proteins share a common set of 4 acidic conserved residues that are predicted to constitute their active site. Based on the conservation of the acidic residues and structural elements Aravind and colleagues suggest that PIN and NYN domains are likely to bind only a single metal ion, unlike the FLAP/5' --> 3' exonuclease superfamily, which binds two metal ions. Based on conserved gene neighborhoods Aravind and colleagues infer that the bacterial members are likely to be components of the processome/degradsome that process tRNAs or ribosomal RNAs.	2.66579e-20
NC_011662.2\|WP_012584216.1\|68721_69600_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	3.80303e-32
NC_011662.2\|WP_004312771.1\|75537_76191_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	2.37525e-69
NC_011662.2\|WP_012584210.1\|60447_61029_+\|DUF4276-family-protein	gnl\|CDD\|379470	pfam14103, DUF4276, Domain of unknown function (DUF4276). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 224 amino acids in length. There is a single completely conserved residue E that may be functionally important.	4.00784e-11
NC_011662.2\|WP_012584218.1\|70448_72623_-\|catalase/peroxidase-HPI	gnl\|CDD\|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NC_011662.2\|WP_012584209.1\|59257_60451_+\|AAA-family-ATPase	gnl\|CDD\|226984	COG4637, COG4637, Predicted ATPase [General function prediction only].	6.2859e-104
NC_011662.2\|WP_012584221.1\|76253_77348_+\|FUSC-family-protein	gnl\|CDD\|379231	pfam13515, FUSC_2, Fusaric acid resistance protein-like.	2.70819e-20

>NC_011662.2|WP_012584217.1|69596_70118_+|M48-family-metallopeptidase
MNTRRSPDYLAGYPPALVHQVRTLIEQGGLADALRRRYPQGHAVRSDSALHDYVQALKAAHLRSAPPLTKVRFDNTLHVIRNALGTHTAISRVQGSRLQAKREIRIATLFRAAPEAFLRMIVVHELAHLRVREHDKAFYQLCLHMEPDYHQYEFDLRTYLSYRDAGGEALWGA
>NC_011662.2|WP_012584216.1|68721_69600_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MSTDSAALHYDTIARAIAFVRARPRHTPPSGAVAEALGLDLGQWQQVLAEWAGITPERFLHCLGRAYARERLSPTPERLPERDAGDPAPSDLARAVPLTWEPMPPASGRTVALGHGLAATPFGDALLAWTTRGVCHLAFRCRDEAALLVELRSLWSAAAPVRDDAHAHRLAQRIFPSRAPSTPVAAATGASGPAEAANPAPGGVHLILRGTPFQVRVWSALMRIPPGRLMSYRQLATLLGMPAAPRSVGSAIAANTLGYLVPCHRLIRADGDAGEFRWGRERKLAMLAWEAT
>NC_011662.2|WP_012584215.1|68097_68412_-|monooxygenase
MPILLQVDFPYAGPWGEDMAQAMRGLAESIAQEPGLLWKIWTENRDSGEAGGIYLFTDRADAERYLAMHRARLLGFGVPEVHAKLFEVNAPLSAIDRAPLAGLQ
>NC_011662.2|WP_012584214.1|65205_68034_+|hsp70-family-protein
MATRYTVGIDLGTSNTVVAFAAEGEDRIQVLEIEQLVGRGELAARTLLPSVRYHPAAGELDPATLRLVASAGEGQGAPPAVLGEAVVGQYARELGAQVPGRAVASAKSWLSHAGVDRNAAILPWGAAEDVPRVSPVVASASYLAHVRAAWNRQHPGAALENQDIVLTVPASFDEGARALTLEAARLAGLPRLRLLEEPQAAFHDWLFRHREQLAAELAQSRLLLVCDVGGGTTDLTLIQVEPAADGLSPPRLTRIGVGDHLMLGGDNMDLALAHLVEKRLLAGGERLSAAQLAQLVQRCRAAKEQLLAADAPEELKVTLLGAGSRLIGAARSTALRRDEVLRLVVDGFLPLVGADEAPARRRAAIVEFGLPYPADPAISRHLAAFLRRHGQVSRAALGMPGPGAGRDADGDADEAAAPLAIPDTLLLNGGVFRADAISARLEGLLAHWRGAPPRVLHNDAPDLAVARGAVAFALVRAARSGLGIGGGSARSYFLVLEAGGEAARAICVLPRGTESGTEVALPERRFALRLGQPVRFHLVSSTGDRAWQAGELVELDADDFIHLPPLAARLPATAAGRRENVAVRLVACLTEVGTLEMQCVAIDDDTQRWQLAFQVRAEADTPATEAAAGAHPRLAQAIALIDEVFGGQARELDAKAVRQLRARLERVLGRRDDWDMALLRALFDALLERARRRRRSAEHERVWLNLAGYCLRPGLGAALDDWRIDQLWALFGQGLQYVREGNNWSEWWTLWRRCAGGLDEARQLQVLEVLAEHLEDTDAARRRGDPVQGSYDDMVRLAAALERVPAMHRIEVGKWLLERLARPAEKAHTWWALGRVGARESLYGSAHTVVPPETAAEWLQAVLALDWKVVEPAAFAAAQLARLTGDRARDLAPELRDEVARRLAALRAPQSWITMVREVVSLDDADRRRSFGEALPPGLRLL
>NC_011662.2|WP_012584213.1|63347_65195_+|Hsp70-family-protein
MSAPARYTLGIDLGTTHCALSYVDLEASDGDQAAQQVLEIPQLTGPGSIEARPLLPSFLYLPHADELAPGDLSLPWGATQDHAVGEFARSRGAATPIRLVASAKSWLCHPGVDRRADILPAEAPPEVARISPLTASVRYLSHLRAAWNAAHPEAPFDAQDVTVTIPASFDPAARELTAEAAQAAGYPPITLLEEPQAALYSWIQRSAGQWRKEVKTGDLILVVDVGGGTTDLSLIAVLEREGNLELHRVAVGEHILLGGDNMDLALAYTVTRKLAEQGTRLDPWQTRALAHACRGAKEALLSDSDLDSVPVVVPSRGSKLIGGSIRTEVRREELVATLVEGFFPRVAVTEMPITRARAALTQLGLPYAQDAAVTRHLAAFLTRQLGATADLEGFAAQPEESVFLHPTAVLFNGGVLKSGLIAGRVLDTLNDWLAADGAAPARLLGGADLDLAVARGAAYYGYVRRGRGVRIRGGTARAYYVGIESSMPAIPGMEPPLEALCVAPFGMEEGSEAALPAQEFGLVVGEPVRFRFFGSSVRRQDEVGTLLDFWQPDELQELEEIEATLPAEGRRPGEVVRVKLHARVTETGTLELEALPVDGSARWKVQFDVRGTAEA
>NC_011662.2|WP_012584212.1|62796_63351_+|DUF2760-domain-containing-protein
MASRNPSFFRRIGLAFSVLFGAELAGRLVRLREEGADTEAAAGTEDAAAAAQPAIVRETTPEAALQLLGLLQRDARFIDFVQENIAAYSDADIGAAARVVHEGCRKVLDEHFAITPVRDEAEGSRLTLPEGFDAAAVRLTGKVVGKPPFTGTLGHRGWRVTDTRLPALAEGHDASVIAQAEVEL
>NC_011662.2|WP_012584211.1|61358_62705_+|NYN-domain-containing-protein
MKSALFVDFDNVYSGLRKLDPAIADRFARQPLEWVNWVIGELELPDHAPAGARRRLLVRRCYLNPQAYQRFRPSFNLAGFEIIDCPALTSEGKTSTDIHMVLDIIDLLQHEARYDEFIVFSADADFTPVLRKLRRWDRRTTVLAIGFPSAAYRASADLLIDPDEFVRNALGFKDEDDAPGAGAPPADVAPESLSLAASARFAQASPEAARSVPPASFSSGADALDHDLAEIVETMRAEVARSAAPVPCSRLASLITTRHPALAADWNGKGSFRRFVDSLELAPLRFDWSNSGGFVFDPARSGAGMQDGSVTPDWGEDQDILPLAMQIHEVSGVPLLGPAEYRALFSIIADDVGRHPFDLKETGKRVRDRLREAGLGGSRLDVNWILRGLLMRGHAFGEGQDRAATLATKTANNVRSLCLREQMILDRAAETAIARWFGTHPAPTRSGQ
>NC_011662.2|WP_012584210.1|60447_61029_+|DUF4276-family-protein
MRELVFLLEEPSAKAMLESLLPRMLKEDTRFRCIPFEGKQDLEKQLTRRIRAYQNERARFIVLRDQDSHPDCTAVKQGLLDLCDKSGKFARCLVRIACRELEAFYLADLQAVERALEIDGLTRHQNSRKFRSPDGLGSPSRELKTLTRNRYEKVAGSRAIGKHLQLDNARSASFRNLIAAIRRCEDELLREAV
>NC_011662.2|WP_012584209.1|59257_60451_+|AAA-family-ATPase
MKIESIRLKNFKAFRNVHLKDIPSFLVVVGANGSGKSTLFDVFGFLHDCLKGNVRQALDKRGRFGEVLSRGCDPKKDTILIELQYRMEITDVERLVTYSLEIGERQGLPVVCKELLRYKRGRYGSPYHFLSFAEGEGYAITNEEDFNKTDEELDRETQRVAPDTLAIKGLGQFERFKAANAFRSLIENWHVSDFHISAARGRKDASGEMEHLSETGENLPLVARYLHEQHAEIFSRILATMTKRVPGVTSVEPKLMDDGYLTLRFQDGSFKTPFLDRYVSDGTIKMFAYLVLLHDPKPHPLLCVEEPENQLYPQLMPELAEEFRSYANRGGQVFVSTHSPDFLNAIELDEVYWLVKQQGYSEIHRARDHAQIAAYVAEGDQLGYLWKQGFFDGVDPR
>NC_011662.2|WP_012584208.1|57562_58888_+|hypothetical-protein
MSWSTAQDLRAQVMRLWERGELLREGLPQDSGAPPCACLPEEESEGSGAQPCELPADAAAYTAVGPPAGHSRFPLRLTLKTPTSDDITRHFDAVRAWVAAISATPHVRLEWQETRHRVQGSQRLPASAWVDRLDDALAWIGKRAEDARFRALHAETAARQPLLLPWLHKRPLRALELAAEWSRLLDVVAWLQAHPRPGMYLRQVDLPGIHTKFIESQRGVLAELLDLALPAAAIDPSRTGAQQFAARYGFLDKPVLLRLRILDPALGLLPGAPCPDLALDADSFARLRLDVARVFITENETNFLAFPRVDKAIVIFGAGYGWEALARAEWLQRCPIHYWGDIDTNGFAILAQLRARFAHVESLLMDRATLLAHEALWGREDSPRPADVSRLSAEERGLYEDLRNHHIRPSLRLEQEHIGFGWLEKALRIVHAVDDFQPSDG
>NC_011662.2|WP_012584218.1|70448_72623_-|catalase/peroxidase-HPI
MSENSTNTAGKCPVMHGGNTAAKDAVMAWWPKALNLDILHQHDRKTNPLGPGFDYREELKKLDVDALKNDLKALMTDSQEWWPADWGHYGGLMIRMAWHAAGTYRIADGRGGGGTGNQRFAPLNSWPDNGNLDKARRLLWPIKKKYGNKISWADLIILAGNMAYESMGFKTFGFAFGREDIWHPEKDIYWGSEKEWLAPSGSEGSRYSGQRDLENPLAAVMMGLIYVNPEGVDGKPDPIKTAHDMRVTFARMAMNDEETVALTAGGHTVGKAHGNGSAAVLGPAPEAADLEEQGFGWMNHTTRGIGRDTVTSGIEGAWTSHPTKWDNGYFDMLFKHDWWLQKSPAGAWQWEPVNIAEEDMPVDVEDPSIRRKPMMTDADMALRFDPAYRKIAERFRNDQAYFEDVFARAWFKLTHRDMGPKARYLGPDVPAEDLIWQDPVPAGNKTYDVAAVKARIAAAGLSVGDMVATAWDSARTFRGSDYRGGANGARIRLAPQKDWEGNEPARLARVLAAYEKIAAETGASIADVIVLGGNVGLEQAIKAVGFNVEVPFAPGRGDASQAQTDVESFEVLEPVHDGFRNWQKKDYVVQPEEMLLDRAQLLGLTAPEMTVLVGGLRVLGTNHGGSGHGVFTDRVGALTNDFFVNLTDMSYSWKPTGRNSYDIVERKSGAKKWTATRVDLVFGSNSILRAYAEVYAQDDNQEKFVRDFVAAWTKVMNADRFDLR
>NC_011662.2|WP_012584219.1|73150_74407_+|OprD-family-porin
MSKKLAGLIVLGLASATPAFAAGQAEAKGLVEDSSLNVLLRNAFINRDYKGGRHDSGEWGQGAIANFESGFTQGTVGFGVDAFAAYAVRLDGSRDRAGNWGIDFFKQDSTGMPEKDVAKGGASLKLRFSNTVLAYGDLRPNLPVLSHDNSRLLPESYTGTMLTSTEIEGLEFNAGTFHAQSRKSDEGRDSGGLKGIDVIGASYKFNDAFSGAFYVSDVEDVLKRQYLNLNYVLPIASNSLTFDFNGYRTKQDADFQPGKSRIWSLASTYATGPHAFTLAYQRNNGDIDYNYGFYQSEGWIGDGGGSIWLANSYWSDFNAADEQSWQVAYSVDFAEYGIPGLSYRIAYVRGHDIDVGTTTDGKEHELFNQLSYKVQSGAAKDLNVRLRASTLRVSESARAYNSSGNEVRIFLDYPFSVF
>NC_011662.2|WP_012584220.1|74513_75311_-|PEP-CTERM-sorting-domain-containing-protein
MKTRTRTSCKAGVLALALALSAGGASAAQIYWTDWTGSDLDPGVGFKGVGTITTSNSTVSVTYTNPQGISFYETGGGTYYYSNGTDGPTGTSPFTSTAVDNRPATTDIVALNRAGLQTLSFSQAIANPVFAYVSLNGNGYGFDQDFDILSFGDSSDGNACGYWGCGTSYKQMVTVNGKTEYQLLGTGEPHGTLQFKGTFDTVNWRSLSDENWNGFTVGVQGTAVEFCDANPTAPGCTPNGVPEPASLALLGLGLAGLGVARRRRA
>NC_011662.2|WP_004312771.1|75537_76191_+|RluA-family-pseudouridine-synthase
MRPEIHPSIPALHVDECLLVVDKPAGLLSVPAGGEGRQDCLAARIQARWADARIVHRLDAATSGLVLFARGAEMLRRMSLAFEQRIVGKQYVAVVHGHLAQDDGEIDLPLAEDADNRPRQIVDALRGRRALTRYRVLDRQGAGADACSRLELKPVTGRAHQLRVHLLCLGHPIFGDPLYAPPESAARFGRMHLHAARIAFMHPHTRVPMVFDSPAPF
>NC_011662.2|WP_012584221.1|76253_77348_+|FUSC-family-protein
MTTRSPLQRVADLLRAEWHHLTAFTPSTRRWQLAFAAALASGLPLMVGAWFGHLEYGLISSIGGLALLYLPNTPMSHRMVWLMACAFGMAASYALGLMTHFLPLAKVGVLALIAMLVTMVCRFYRVGPPGSLFFVMAAAIGAYTPGTVEEIPLRVGLFTMGALLASLIAFVYSLQVLRLQPADAVPPLQPPTFDFVVFDSVVIGAFVGLALAIAQALQLDRPYWVPVSCLAVIQGVSLRAVWNRQLQRVLGTAIGMLFAWWLLSLPLDAWRIALLVILLVFVIESLVVRHYGLAVIFITPLTILLAEAATLGHAPLAELIASRFTDTLLGCVVGLVGGICLHSARFRTLFGNPMRRLIPRQPPS
>NC_011662.2|WP_012584222.1|77382_78339_+|LysR-family-transcriptional-regulator
MKINQLRYFLAVADKGSVRAAATALGVSAAAVSQALRELETAMGTPLFTRESHGAVLSYAGRQFLIHARLILGQVSRAEAEIAQIRGATGGSLTIGVTPWVAQSILPHALARFHALRPDVHLDVTEAVGTVHPLLRDGTLDLVIAIPPPRQEASIFYTRELFRCDLAVVGRLGHPFASATSLEELVDQDWVLTMLGAGQDEPLVNLLAPHGIAPPPHRVHYARSALVAISMLEVGNMLTICPWPLLETPLLRGRVQALPIRNPLPEMHTAIIVRRNDTLSAAGQLFIDCFEDATRTCVATDDPALKRIMNSVERAPDA
>NC_011662.2|WP_004312777.1|78461_78731_-|hypothetical-protein
MQAPKILPWVARKAGISEGDALDAWRRALVDAAAYVGVRSGATFDRVAVDRFVALAHARASVLSARAARPAPSVTRRWPPGAVAQRCAA
>NC_011662.2|WP_012584223.1|78973_79990_+|class-I-SAM-dependent-rRNA-methyltransferase
MSSTLTDLLAAALAARAPLIAQLAAEDTDAWRLFHGTVEGAPGLTVDRYGSVLLAQTFHRPLSAEQLAELEAFYAAALPGLALVWNDRSGKNSRVANPLPPEQQALAEQPSEFSELGVRYRFQARHGGQDPWLFLDLRAARRRVMQEAAGKSLLNVFAYTCGVGIAAAKAGARHVVNVDFAESALAVGKDNARLNELPIRVRFIKSDAFAALRQYAGIGQPKMVRGKHLPPFPELAPHRFDLVFLDPPRYAKSPFGVVDLVHDYAALFKPALLATEEGGTLICCNNVARVDREDWLEQLERSARKAGRAVREAEWISPEADFPSRDDNPPLKVVLLRV
>NC_011662.2|WP_004312780.1|80046_80391_+|hypothetical-protein
MAGFENYQEATRKIEDEIEHMGVALGIDWSDEAQVRALAREALDHSQDRIREAAASPDDHELGAKVTLFGLASLMLRTMEESAGVGIESHGGPVWKAFGRALWLEAEQRRQPEA
>NC_011662.2|WP_012584224.1|80572_82225_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MLQKFPAFAGVQGPVVVIVMDGYGIPRHEVGSAIDAARKPTLDRLFAQYPNIVLRAHGTAVGMPSDDDMGNSEVGHNAIGAGQVYAQGAALVANAIAEGAIWQGEAWQQIVAGAKTGANGKAGVLHFIGLFSDGNVHSHIDHLKAMVLRAKEEGVPTVRIHALLDGRDVPETSALDYVVPFEAFLKDISTAGFDARIASGGGRQTITMDRYDANWPMVARGWRTHVLGEGPQFASATDAVHGLREKHPGTIDQDLPEFIVAEDGRPIGTIEDGDAVVFYNFRGDRAIEITRAFVEEHFTAFDRVRHPRTTYAGMLQYDGDLQLPKRFLVAPPAIKDTSSEWFSKSGLAQFACSETQKFGHVTYFWNGNRSNKFDGETWQEVPSDVVPFEQRPWMKAAEITDAMIAALQSGRFKVLRCNYANGDMVGHTGNFRAATMAIEAVDLALARLLPAIDAAGGVALITADHGNADEMFELDKKTRQPAQNKDGSYKAKTAHTLNPVPLILYDNVSGGKLGLKPLETAGLSNIAATVANLLGLHKHDKWDDSLLEVK

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Crispr_ID: NC_011662_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_2

1244601-1244680

Orphan

Consensus_repeat	Method
GTAGGAGCGACGCAAGTCGCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011662_2

>merge|NC_011662|2|1244601-1244680|CRISPRCasFinder
GTAGGAGCGACGCAAGTCGCGATAGCCGCCGCCGTACCTCAGGTGCAGCCGGGTTCCGTGGGAGCGACGCAAGTCGCGAT

>NC_011662|2|2|1244601-1244680|CRISPRCasFinder
GTAGGAGCGACGCAAGTCGCGAT	AGCCGCCGCCGTACCTCAGGTGCAGCCGGGTTCC
GTGGGAGCGACGCAAGTCGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_012584867.1\|1231051_1232158_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|340819
NC_011662.2\|WP_144312147.1\|1247504_1248782_-\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012584884.1\|1256672_1259150_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NC_011662.2\|WP_012584875.1\|1243071_1244298_+\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012584880.1\|1249787_1250225_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NC_011662.2\|WP_012584883.1\|1254432_1255821_+\|nitrate--and-nitrite-sensing-domain-containing-protein	unknown	unknown	gnl\|CDD\|377989
NC_011662.2\|WP_012584869.1\|1234065_1235283_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340825
NC_011662.2\|WP_012584872.1\|1236958_1237384_+\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012584882.1\|1253027_1253837_+\|5,6-dimethylbenzimidazole-synthase	unknown	unknown	gnl\|CDD\|380321
NC_011662.2\|WP_012584879.1\|1249107_1249422_-\|H-NS-histone-family-protein	unknown	unknown	gnl\|CDD\|376390
NC_011662.2\|WP_012584868.1\|1232218_1234069_+\|heparinase-II/III-family-protein	unknown	unknown	gnl\|CDD\|377945
NC_011662.2\|WP_012584877.1\|1245575_1247453_-\|5'-nucleotidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|211667
NC_011662.2\|WP_012584876.1\|1244704_1245166_-\|transposase	unknown	unknown	gnl\|CDD\|376616
NC_011662.2\|WP_012584874.1\|1240264_1242280_+\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|224011
NC_011662.2\|WP_012584873.1\|1237377_1238706_+\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012584881.1\|1250370_1251183_-\|VPLPA-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|377877
NC_011662.2\|WP_004315153.1\|1251907_1252384_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|372667
NC_011662.2\|WP_004315162.1\|1239019_1240234_+\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223476
NC_011662.2\|WP_012584870.1\|1235279_1235885_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|376775
NC_011662.2\|WP_012584871.1\|1235963_1236626_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100050

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_012584867.1\|1231051_1232158_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|340819	cd03786, GTB_UDP-GlcNAc_2-Epimerase, UDP-N-acetylglucosamine 2-epimerase and similar proteins. Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family (EC 5.1.3.14) are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	6.91025e-133
NC_011662.2\|WP_012584879.1\|1249107_1249422_-\|H-NS-histone-family-protein	gnl\|CDD\|376390	pfam00816, Histone_HNS, H-NS histone family.	4.49692e-23
NC_011662.2\|WP_012584884.1\|1256672_1259150_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
NC_011662.2\|WP_012584880.1\|1249787_1250225_-\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	5.48812e-60
NC_011662.2\|WP_012584869.1\|1234065_1235283_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340825	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.	2.75374e-123
NC_011662.2\|WP_012584868.1\|1232218_1234069_+\|heparinase-II/III-family-protein	gnl\|CDD\|377945	pfam07940, Hepar_II_III, Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.	3.60644e-30
NC_011662.2\|WP_012584882.1\|1253027_1253837_+\|5,6-dimethylbenzimidazole-synthase	gnl\|CDD\|380321	cd02145, BluB, 5,6-dimethylbenzimidazole synthase. BluB catalyzes the O2-dependent conversion of FMNH2 to 5,6-dimethylbenzimidazole (DMB), a component of vitamin B12; is is a subfamily of the nitroreductase family; nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.	1.30121e-92
NC_011662.2\|WP_012584883.1\|1254432_1255821_+\|nitrate--and-nitrite-sensing-domain-containing-protein	gnl\|CDD\|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	2.5376e-38
NC_011662.2\|WP_012584877.1\|1245575_1247453_-\|5'-nucleotidase-C-terminal-domain-containing-protein	gnl\|CDD\|211667	TIGR01530, Probable_5'-nucleotidase, NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc. [Transport and binding proteins, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	3.58843e-130
NC_011662.2\|WP_012584876.1\|1244704_1245166_-\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.31719e-08
NC_011662.2\|WP_012584874.1\|1240264_1242280_+\|polysaccharide-biosynthesis-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
NC_011662.2\|WP_004315153.1\|1251907_1252384_-\|VOC-family-protein	gnl\|CDD\|372667	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	9.11299e-38
NC_011662.2\|WP_012584881.1\|1250370_1251183_-\|VPLPA-CTERM-sorting-domain-containing-protein	gnl\|CDD\|377877	pfam07589, VPEP, PEP-CTERM motif. This motif has been identified in a wide range of bacteria at their C-terminus. It has been suggested that this is a protein sorting signal. Based on phylogenetic profiling it has been suggested that the EpsH family of proteins mediate this function.	4.53117e-05
NC_011662.2\|WP_004315162.1\|1239019_1240234_+\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	gnl\|CDD\|223476	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane].	1.9056e-146
NC_011662.2\|WP_012584870.1\|1235279_1235885_+\|sugar-transferase	gnl\|CDD\|376775	pfam02397, Bac_transf, Bacterial sugar transferase. This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.	1.57457e-95
NC_011662.2\|WP_012584871.1\|1235963_1236626_+\|acetyltransferase	gnl\|CDD\|100050	cd03360, LbH_AT_putative, Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.	8.33387e-57

>NC_011662.2|WP_012584875.1|1243071_1244298_+|hypothetical-protein
MSAIVCADGTASLSMQWGVGPCRPDHSEFRKVGEDVLGAVKYLLCALAVQPVCRVATDSLEAALAEGLAALPEVRRARYREGAALLLGADDAIRARIFGRHAAVPVERVRELGFDALLAATRAPVLDAKLLGMPRREGAVVSFERLEAVWGPMTAVSAVSFTPELVGAVVPMTGGSSGIDPEVPFPGYYRKLEFSVRQLKCFDETNPESFGDDEIGIGGTAVHTDGTVTQVGRKTYDDFSDGDSAWLNWTFASFTRTKPKSGGIVYDTYGVFIALAEVDSGGFQKALDKIYAQVQDKVKAAIATAVTAGASPFVGPFLGAVAGAVAAWVADKLIEWVISWFGDDLFPVKYATLTGPRGFAFYPSDKWIHEGTGYRSKDEWLKFYGHGGHYGVRYYWRVSDWVNGSAPQ
>NC_011662.2|WP_012584874.1|1240264_1242280_+|polysaccharide-biosynthesis-protein
MRNSLLGLPRPYKRALQVVADVVLVWVALWLAFYLRLEDVRAIEPFGGHLRVFLLAPVLTLPFFVVLGLYRAVLRYVGRHALITIGKAVTLAALVFWLVVLALPVQQPPVPRSVPLIYWATAMLLLGGLRLVMRNVFLGEWTPLPPAVRGVRGVPHRVEGAQERPRVVVYGAGSAGNQLVSALRAGRELRPMAFVDDDASLWGTVVDGLPVYAPEDMGRMLAETGATQVLLAVPSASRQRRREILDLLDPYPVHVRTLPGFKSLVDGKVKVQDLQEVDIADLLGREPVEPDEALFERCILDQVVMVTGAGGSIGSELCRQIVTCRPRGLVLFEHSEYALYSIHTELERYIKERGLVIELVGMLGSVRNGGRMFDALTAWKVDTVYHAAAYKHVPIVEHNIAQGFFNNTMGTLHAAQAALRAGVRNFVLISTDKAVRPTNVMGATKRLAELVLQGLSVEPAPVLFREDVEGAVPNRTRFTMVRFGNVLGSSGSVIPLFREQIRRGGPITVTDPRITRYFMTIPEAAQLVIQAGSMGEGGDVFVLDMGQPVKIVDLAERIVHLSGLSVKSKSHPQGDIEIVFTGLRPGEKLYEELLIGDNVLPTAHSMIMRANEERLSWRQLTLGLDAIIQAIKNGDYPAVREVLKLLVSGYEPDERLVDFIYLKRNQEEDRP
>NC_011662.2|WP_004315162.1|1239019_1240234_+|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein
MLNTPFSPWPSFTTEEADAVRDVLLSNKVNYWTGTECRAFEKEYAAWAGTRYAVALANGTLALDVALHALGIGPGDEVVVTPRTFIASVSCVVNAGATPVFADVDPDSGNLSAETIARVLTPRTRAVICVHLAGWPCDMDPIMALAEQHGLKVIEDCAQAHGARYKGRSVGSIGHVGAWSFCQDKIMTTGGEGGMVTTNDEALWRDMWSFKDHGKSYAAVYEREHPPGFRWLHEGFGTNWRMLEMQAAVGRIQLRRMAAWTAAREAHAEAILAVCRRHAVLRVPEFRCNAAKCDPGCAARSGCVHAQYKCYAYVNPERLAEGWSRDRIAAEINARGVPCYQGSCSEVYLERAFDDTGWRPAERLPVARALGETSLMWLVHPTLTAAEIDQTCKVVDEVLGLAAR
>NC_011662.2|WP_012584873.1|1237377_1238706_+|hypothetical-protein
MLGTWEITAGWEALDTGSDEERACFAAVGIRAHSIWLTEGHDAIVNRLRQAPYLSAYDLAEWLAWNWWRLRWEPRSMAEGWDFSHRMASIGGGYIWPDITIFSDGERTVLLSRATAERPQTPFRYINQVAPVISALDFERGVEVFVAQVLERLEAMGVRESNLSRVWHDVQAERGDATLGRRRKLEALMGVDPDESDPELVERVLADAVRLGQGAVEELAADAGGAAERRRVLSADELAGLAVRSGFAASFDDAVRLAAPATVAPRGQLAAWQLGADAAKALRAQEALGEGAIDDVALAALLGVTPAALKRPAGGEAVGISFALRQAGEADRVLLRSRVPAGRRFELARLLGDRLLGDVAESLHPATRSTTYRQKAQRAFAAELLSPFAQVWGMLDGDFSAESQQEVAEHFKVSELTIRTQLVNHRILDRDELESEEFSIAA
>NC_011662.2|WP_012584872.1|1236958_1237384_+|hypothetical-protein
MRNRTGNNPKRRIVKDALPDMAARELLLAHVRYVGSGHHKIYPANYGLGRTNPRPTSSVCDALRPLPLAEATELLRQGVLRAMFSTYVQDGFPKYIWSVSADGTVYEAKTHPNTPGQYHGYPLEKEDRMCDEVKAAWEARC
>NC_011662.2|WP_012584871.1|1235963_1236626_+|acetyltransferase
MNSPLFAVYGASGYGREVMPLAREQLRRQGVAPERLMFVDDAAVGSTVNGQRVLSYADFVAEPASARHVVLAIANSPVREHLAARCAADGVRAWTVVAGNVVVMDAVEIGDGAVLSPFVTITSNIRIGRHFHANLYSYVAHDCVIGDFVTFAPGVKCNGNIIIEDHAYIGTGAVIKQGKPGQPLVIGRGAVVGMGAVVTKSVPAGATVVGNPARVMEKAV
>NC_011662.2|WP_012584870.1|1235279_1235885_+|sugar-transferase
MIKRAFDIVASAIGLLLLAPVIALLAWQIRKKLGSPVLFRQTRPGLHGQPFQMVKFRTMRDAIGPDGQPLPDSERMTPFGSFLRSASLDELPELWNVLKGDMSLVGPRPLLMEYLPLYSPEQARRHEVRPGVTGWAQINGRNALSWEEKFRLDVWYVDNQSFWLDLKILALTVKKVFVREGISAAGEVTAAKFTGSGDKGV
>NC_011662.2|WP_012584869.1|1234065_1235283_+|glycosyltransferase-family-4-protein
MRVLYFHQHFSTPKGAAGIRSYEMARRLVARGHQVTMVCGSYGLGETGLSAPFAKGVRRGNVDGIDIVEFDLAYSNADGFVKRAMTFVKFALRSVKLALTERYDVVFATTTPLTAGIPGIFARWLRGKPFVFEVRDLWPELPKAMGVIRNPLVLGAMSFLEWASYRSAHRLVGLSPGIVEGIARRGVPRERITLVPNGCDLEIFGGEVVPWRPEAVKPTDLLAAFTGTHGMANGLDAVLDAAAVLKRRGRDDIKILLIGQGKLKPALQARAEREGLWNVVFHDPVNKARLAGLMAGTDVGMQILANVPAFYYGTSPNKFFDYIAAGLPVLNNYPGWLAGMIEEHRCGFAVPPDNPNAFADALEKAADDRGALKEMGQRGKELAIREFDRQKLADRWVDWLEGARR
>NC_011662.2|WP_012584868.1|1232218_1234069_+|heparinase-II/III-family-protein
MSVAIKARTALALGVPNLVRALSYRLGVKTGLNPVRRLRGAAPAGPFFAMPACAARPPKPERLLVASQAWQTSARLFSHWPIAVTDEPPDWHSNLLTGKQIAEPDREWWRIPDFDPAVGDIKQIWEASRFDWVLAFAQRARKGDAASYERLERWLADWSARNPPYCGPNWKCGQEASMRVMHLAMAAVMLGQVDTASPALLELVRLHLQRIAPTLRYAMAQDNNHGTSEAAALFIGGSWLSRKGVAGGARWAALGRKWLENRAARLISLDGTFSQYSVTYHRVMLDTYCMVEVWRRRLALTAFSGQMAVFMQAATRWLYVMTRPENGDAPNLGANDGARLLQLTDTDYRDFRPSVQLAAALFWGMRAYAEDGAWNQPLRWLGVDVPERVFTPGWLELFDDGGFGVLRRGDVLAVLRYPLFRFRPSQADALHLDLWVGGRNLLRDGGSYSYNTEPKWLNYFGGTESHNTVQFDDRDQMPRLSRFLFGDWLRTIEHEGRREAADALTYGAAYRDRQGAYHRRRVALAGDALHVQDRIEGFARKAVLRWRLEPGEWQVEGHCVRNGAHTLRVQADVPLVRFELTTGWESRYYLEKTELPVLEIEVDQPGTLMSEYRWAP
>NC_011662.2|WP_012584867.1|1231051_1232158_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MAAEYLVDIIAGARPNFMKIAPIIRAFEARKAAGGALRFRLIHTGQHYDPRMSGEFFRQLGIPEPDVNLEVGSGTQAEQTGAIMSRYEALLLEKPSNLCLVVGDVTSTMACAIAAQKLRIPVAHVEAGIRSGDWTMPEEINRMVTDSITNWFFTTSEVANENLRRTGVSDDRIFFVGNTMIDTLLVNLPRLQKPEFWDELGLKAGEYFVVTLHRPANVDKGHGFARLLAAIGEGTRGLPVVFPVHPRTAKTLRDLNEVPANFRLVDPQPYLEFNYLVKNAKAVITDSGGITEETTVMGVPCMTLRDNTERPETVTTGTNELIGTNPDALAPALEKLFAGQWKKGGIPPLWDGKTGERIVAELERLLVA
>NC_011662.2|WP_012584876.1|1244704_1245166_-|transposase
MLPHTHHLRRGRVSEAGRIYLITTVTHGRARLFDDLRLARSTIAHLRHADVQGRSTTLAWVLMPDHLHWLVQLESGSLSRLVAGFKAASARAINHLLHTPGQPRWQTGFHDHALREEEDLSALARYIVANPLRAGLVASVRAYPHWDAVWLPG
>NC_011662.2|WP_012584877.1|1245575_1247453_-|5'-nucleotidase-C-terminal-domain-containing-protein
MRHPGIPKLLLLTGAIMLAGCTDTSSGEAKADAEPVPAAAQPDAPRPDYRLAILHINDHHSNLDESDASLRLRTGSDDTRASVTVKLGGFPRVATAIAELAARHEHVLKLHAGDAITGTLYYTLSEGEADAALMNRVCFDAMAVGNHELDSGDAGLQTFIDHLWSAPDCRTPVLSANLAPRAGSPLGSDSVRPSVVVERGGERIGIVGLTTAAKTQNASRPDPGTRLLDEADSAQREIDRLRAQGIDKIVLLSHLGYAQDQAIAAQLSGVDVIVGGDSHSLLGDDSLKTFGLSPAGAYPTAARNKDGDAVCVVQAWQYSAVVGELDVLFDGQGEVKSCAGQPHILIGSTLGTLAGDALAAARADLASQPALRVTEPDAAASAVLADYASQVKAFGAEPVAVAQQNLCLRRVPGTRRDPSRSKLDGCNLDPHLIAHGGDVQQLVAEAFLRQGQRFGGADLSLQNGGGVRVDLAAGTVTIGHIYTVLPFKNTLVALTLTGAELRATLEDAMQSVVAGNTGSYPYAGALRWQVDLRQPLGQRIGALEHRNAQGQWVALDEAATYRMITNDFIAAGQDGYTTLGTLGADRREETFLAYADAFLQYARQNPTLTRPATADFSTQGFVDTE
>NC_011662.2|WP_144312147.1|1247504_1248782_-|hypothetical-protein
MSDLAMAHDQRDGFRRSDASRDRAIPQAMRGGKGGMANIATCVAPTGNAVGDLAMAHDQRDGFRGSDASRDRAIPQAMRGGKGGMVDIATCVAPTGNAVGDLAMAHDQRDGFRRSDASRDRAIPQAMRGGKGGMVDIATCVAPTGNAVGDLAMAHDQRDGFRGSDASRDRAIPQAMRDGKGGMADIATCVAPTGNAVGDLAMAHDQRDGFRRSDASRDRAIPQAMRGGKGGMVDIATCVAPTGNAVGDLAMAHDQRDGFRRSDTSRDRAIPQAMRGGKGGMVDIATCVAPTGNAVGDLAPAHDQRDGFRRSDASRDRAIPQAMRGGKGGMVDIATCVAPTGNAVGDLAMAHDQRDGFRGSDASRDRAIPQAMRDGKGGMADIATCVAPTGNAVGDLAMAHDQRDGFRGSDASRDCPNHPAAFITT
>NC_011662.2|WP_012584879.1|1249107_1249422_-|H-NS-histone-family-protein
MTTYAELQQKIAELQSQAEELRKRELAEIIADVKQKIAAYGLSAADLGLQAGRESTAAPQKTKTALKAKYRDPATGETWVGRGATPKWMRAYLEAGRNKDEFLI
>NC_011662.2|WP_012584880.1|1249787_1250225_-|low-molecular-weight-phosphotyrosine-protein-phosphatase
MFDKILTLCTGNICRSPLAEFLLRDRLAARGRAATVASAGIGALVGHPADETTQRVALRHGIDLSPHVARQLTPEITRWADLILVMEKHHLEYATRLDPSARGKIFLLGHWDKAEVPDPYRLAEENHQLAYDIIAHTVDQWIGKL
>NC_011662.2|WP_012584881.1|1250370_1251183_-|VPLPA-CTERM-sorting-domain-containing-protein
MKKLALIAATASLAAVSTGASAAYVSTANLGGDFAITGFADATPGTYQIALTNLSGALSLAAGPAGTYTVGIGPGSAGPTGTATATFYSGPGGTVTRSISSNVGIFTGNLTPTGLTPGIYNFAFGAGPAFSVGFNFGGSYDGATTSGVLGLLNGLLGTSFVDPTGAGTLAITGTVTNNSFIMDVVETATNWPGAGALLAAADYGVFLQSNGLTDTTANRLAYAQSPTYNRTDGTFRVSNVAVTAVPEPASLALLGLGLAGLGAMRRRKQA
>NC_011662.2|WP_004315153.1|1251907_1252384_-|VOC-family-protein
MSQRPFKILGIQQIAIGGPSKEKLKTLWVDMLGLEVTGNFVSERENVDEDICAMGSGPFKVEVDLMQPLDPEKKPAVHTTPLNHVGLWVDDLPKAVEWLGANGVRFAPGGIRRGAAGYDITFLHPKGNDEFPIGGEGVLVELVQAPPEVVEAFARIAS
>NC_011662.2|WP_012584882.1|1253027_1253837_+|5,6-dimethylbenzimidazole-synthase
MSSPTQAQCAPASTDASAPIHDPAAARFQANPLFDAAERAAVYRAIHTRRDVRGEFLPDAIPDEVLARVLTAAHHAPSVGFMQPWDFVVVRSREVRAKIHADFLAAHAEAEQMFDEGKRDTYRNLKLEGILESPVNICITCDRSRHGPVVIGRTHIGAMDVYSAVCAVQNLWLAARAENLGVGWVSILHQQALREALGIPREIVPIAYLCVGYVRDFHAQPELEAAGWLKRVPLPELLHFDGWQRGPDGVGEGLIEAIGQLRPSPRSAA
>NC_011662.2|WP_012584883.1|1254432_1255821_+|nitrate--and-nitrite-sensing-domain-containing-protein
MESILAFLVAARRCELRELEQLARSCELVRAVSELVHRLQAERGCSNLHLAAGGRHFDGDRAACVAASIEADAALRTWLEQADVLDARGGAAPTGGSRLLTRIALALHALDGLPALRATIAAGRCTPHEATQRFTQAIAALLALVFEAADIATDPAISRLLVALFNLMQGKEFAGQERAAGAAAFAAGRANAAANARHPAEPDLLHLIETQEACFARFAAFCPPEVRSAWDAACQAMPLAELERLRRKLLAAGKGGALPSALAEPWFACCSARLDHLRVIEDLLAGGLRAACAARIAALQRDPDDPEVLMCALAGGADAAPVFLAGGADELAGVPGEGDEPGTGQTAIAPGAERPAAAPGRLELAADPFGPRLTRSLVDVLHAQSCRLQAMGEELAAVRASLDERKLIDRAKAVLMRHQGLSEDAAYRLIRQTAMNQGRRLPDVARAVLELEAFLPGVASAG
>NC_011662.2|WP_012584884.1|1256672_1259150_+|NAD(P)/FAD-dependent-oxidoreductase
MKKMKLVLVGNGMAGVRTIEELLKLAPDLYDITVFGAEPHGNYNRILLSPVLAGEMTLPEIMLNDLDWYGDNGITLHAGRKVVKIDRVRRKVLAGDGTEADYDRLLLATGSTPFIPPIPGNDLPGVLGYRDIADTEAMIEAAGKYRHAVVIGAGLLGLEAANGLMLRGMDVTVVHLGEWIMERQLDRAAADMLQASLEAKGMKFLLARQTEALLPARNAQGGMNGRLGAVRFKDGMEIPADLVVVAAGIRPNYELAESAGLYCGSGRVRGIHVSDTLQTVTDPRIYAVGECVAHRGIAYGLVAPLFEQGKVCANHLANFGIGRYEGSVTSTKLKVTGIDVFSAGDFSGGPGTEDIVLHDRQGGVYKRVVLKDDRIVGSVLYGDTADGSWYFQLMKDRQSVAEIRDHLMFGQNKLGDAGHKGENRAASMPDTAEVCGCNGVCKGTIVKAIKEKGLFTLDEVKKHTKAASSCGSCTGLVEQILASTVGGAYQAVSANDKPVCACTEHSHKVVREAIFKHHLTSKEAVFDTLNWRTPNGCDKCRPAVNYYLISSWPHEAKDDPQSRFINERAHANIQKDGTYSVVPRMWGGLTTPAELRAIADAAEKYQVPTVKVTGGQRIDLLGVKKEDLPKIWADLNAAGMVSGHAYGKSIRTVKTCVGAEHCRFGTQLAMDMGVKLEKMLFDMYAPHKVKLAVSGCPRNCAEAGIKDVGVIGVDSGYELYVGGNGGIKTEVAQYLCKVGGDEEVMEYAGAFLQLYREEGWYLERTVHWLDRVGLDYVKAKVVEDGENRRRLHARLLDALKDARDPWQTSREEETVKQFIPIKVEA

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Crispr_ID: NC_011662_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_3

1281805-1281912

Orphan

Consensus_repeat	Method
CGCGTCGCTCCCACAAGACGTCGTGGTGCATCCGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011662_3

>merge|NC_011662|3|1281805-1281912|CRISPRCasFinder
CGCGTCGCTCCCACAAGACGTCGTGGTGCATCCGGACGCGTCAAAGGGTAACGCGGCCGGAACGCAGCACAACGCGTCGCTCCCACAAGACGTCGTGGTGCATCCGGA

>NC_011662|3|3|1281805-1281912|CRISPRCasFinder
CGCGTCGCTCCCACAAGACGTCGTGGTGCATCCGGA	CGCGTCAAAGGGTAACGCGGCCGGAACGCAGCACAA
CGCGTCGCTCCCACAAGACGTCGTGGTGCATCCGGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_012584901.1\|1287448_1288270_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NC_011662.2\|WP_004302477.1\|1292792_1293230_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107228
NC_011662.2\|WP_012584899.1\|1283092_1285807_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NC_011662.2\|WP_012584896.1\|1278740_1279577_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NC_011662.2\|WP_012584897.1\|1280516_1281260_+\|membrane-integrity-associated-transporter-subunit-PqiC	unknown	unknown	gnl\|CDD\|225759
NC_011662.2\|WP_041589797.1\|1275579_1276641_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NC_011662.2\|WP_004302473.1\|1293548_1293914_-\|barstar-family-protein	unknown	unknown	gnl\|CDD\|376530
NC_011662.2\|WP_012584895.1\|1277586_1278744_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223838
NC_011662.2\|WP_004302479.1\|1291609_1292512_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NC_011662.2\|WP_041589795.1\|1271348_1272467_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NC_011662.2\|WP_012584900.1\|1285998_1287414_-\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012584889.1\|1268040_1269009_-\|D-2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240639
NC_011662.2\|WP_012584902.1\|1290494_1291397_-\|ZIP-family-metal-transporter	unknown	unknown	gnl\|CDD\|223505
NC_011662.2\|WP_012584898.1\|1281923_1282814_-\|polyphosphate-kinase-2-family-protein	unknown	unknown	gnl\|CDD\|274737
NC_011662.2\|WP_083768721.1\|1272598_1275472_-\|ribosome-associated-ATPase/putative-transporter-RbbA	unknown	unknown	gnl\|CDD\|224054
NC_011662.2\|WP_012584890.1\|1269379_1271326_-\|polyhydroxyalkanoic-acid-synthase	unknown	unknown	gnl\|CDD\|213656
NC_011662.2\|WP_004302475.1\|1293388_1293592_+\|cysteine-rich-CWC-family-protein	unknown	unknown	gnl\|CDD\|379586
NC_011662.2\|WP_041589627.1\|1276894_1277590_+\|CerR-family-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236928
NC_011662.2\|WP_004326372.1\|1279578_1280520_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|224380
NC_011662.2\|WP_004302482.1\|1288529_1290221_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341278

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_012584901.1\|1287448_1288270_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	9.77406e-106
NC_011662.2\|WP_004302477.1\|1292792_1293230_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107228	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic membrane.	3.45194e-33
NC_011662.2\|WP_012584899.1\|1283092_1285807_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_011662.2\|WP_012584896.1\|1278740_1279577_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	1.84566e-134
NC_011662.2\|WP_012584897.1\|1280516_1281260_+\|membrane-integrity-associated-transporter-subunit-PqiC	gnl\|CDD\|225759	COG3218, COG3218, ABC-type uncharacterized transport system, auxiliary component [General function prediction only].	1.52e-43
NC_011662.2\|WP_041589797.1\|1275579_1276641_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	1.54181e-36
NC_011662.2\|WP_004302473.1\|1293548_1293914_-\|barstar-family-protein	gnl\|CDD\|376530	pfam01337, Barstar, Barstar (barnase inhibitor).	1.15059e-31
NC_011662.2\|WP_012584895.1\|1277586_1278744_+\|ABC-transporter-permease	gnl\|CDD\|223838	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	2.89023e-85
NC_011662.2\|WP_041589795.1\|1271348_1272467_-\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.30777e-27
NC_011662.2\|WP_004302479.1\|1291609_1292512_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	4.74362e-167
NC_011662.2\|WP_012584889.1\|1268040_1269009_-\|D-2-hydroxyacid-dehydrogenase	gnl\|CDD\|240639	cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases. 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	3.70967e-166
NC_011662.2\|WP_012584902.1\|1290494_1291397_-\|ZIP-family-metal-transporter	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	5.84086e-37
NC_011662.2\|WP_012584898.1\|1281923_1282814_-\|polyphosphate-kinase-2-family-protein	gnl\|CDD\|274737	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which. [Central intermediary metabolism, Phosphorus compounds].	3.69118e-160
NC_011662.2\|WP_083768721.1\|1272598_1275472_-\|ribosome-associated-ATPase/putative-transporter-RbbA	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.45399e-88
NC_011662.2\|WP_012584890.1\|1269379_1271326_-\|polyhydroxyalkanoic-acid-synthase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	5.66827e-173
NC_011662.2\|WP_004302475.1\|1293388_1293592_+\|cysteine-rich-CWC-family-protein	gnl\|CDD\|379586	pfam14375, Cys_rich_CWC, Cysteine-rich CWC. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 74 and 102 amino acids in length. It contains eight conserved cysteines, including a conserved CWC sequence motif.	6.68199e-05
NC_011662.2\|WP_041589627.1\|1276894_1277590_+\|CerR-family-C-terminal-domain-containing-protein	gnl\|CDD\|236928	PRK11552, PRK11552, putative DNA-binding transcriptional regulator; Provisional.	1.38164e-08
NC_011662.2\|WP_004326372.1\|1279578_1280520_+\|MCE-family-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	1.85112e-33
NC_011662.2\|WP_004302482.1\|1288529_1290221_+\|AMP-binding-protein	gnl\|CDD\|341278	cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria.	0

>NC_011662.2|WP_012584897.1|1280516_1281260_+|membrane-integrity-associated-transporter-subunit-PqiC
MRSSSFLPRRGAGPARPRRAFAAAALCVIALLPACSVLPEAAPLDVYVLPVSTGAPGASANMSPGNPIASPAATSTPAGGAPSASAAARALPWSLRVVRPAAGVHLAGQRIVVMPEGNRVSVYQGAGWSDPAPALLRDRLLEAFRADGRVGALSSDERQLHADFELDSDLRAFQSEYRGGRPEAVLRLDARLVHTASRRIVASRTFEQRQPTADPAVPAVVQAFGAAADRLSAEVVEWTVREAAAVR
>NC_011662.2|WP_004326372.1|1279578_1280520_+|MCE-family-protein
METRAHHVLIGLFTVLVVGAALMFALWLGKSDADRQFEVYDIVFQEAVSGLSKGGTVEFNGIKIGDVVSLRLDPADARRVIARVRVDSAAPVRSDTRARLVPAGITGLTMIRLTSGEDPASTPLVSKGDEVARIIAAPSPLSRLLADGEDAITNVNDLLVQARELLSADNVASFGRTLGNLELATGALAAQREDLNAALREVTQASRDASTALAEAARMLGSANRLVEVQGTQTLDSARDAMRAFERAMGTVDRLIADNRAPLDGGMRGLAEIGPAVAELRTTLASLRIITRQLESRPADYLLGLEPTKEFTP
>NC_011662.2|WP_012584896.1|1278740_1279577_+|ATP-binding-cassette-domain-containing-protein
MTAGLASAASDPRDNIVEVRGVRNQFGSQVVHDQLDLDVRRGEILSVVGGSGTGKSVLLRTIVGLNRPRAGSVHVFGEDLLSLPDARRKQVERRFGVLFQKGALFSSLTVAENVALPLIEHAGMSRREAAELAALKIALAGLPALAGDKFPSDLSGGMVKRAALARALALDPDILFLDEPTAGLDPIGAAAFDQLILTLRDALGLTVFIVTHDLDTIYTITDRVAVLAQKKVLVNAGLDEVAAIDDAWIREYFHGPRGRAAATAVAAAQAVPAASENN
>NC_011662.2|WP_012584895.1|1277586_1278744_+|ABC-transporter-permease
MSAAPRHEARAGEALLAGDGVAAVLRLRGDWTLAHHAALRRQADALRGRIDAATRVELAELGTLDTAGARLLHGLLGGERVAALLADEGALSRERRALLKAVADAIEGREERPAADEGYALGDVLAHIGHTMLVFWRHVSALTGFIGLILETALRVSVQPRRWRVTALVANLERTGLDAVPIIALLTFLVGAVVAFLGATVLQNFGASIFTVDLVAYSFLREFGVLLTAIIVAGRTASSFTAQIGSMRANEEIDAIRVLGLDPVELLVLPRVYALLVALPILTFVAMIAGIVGGMLVSAMTLDISPVLFLSRIEDNVGLIHFWVGMAKAPIFAFLIAVIGCLEGFRVQGSAQSVGEHTTSAVVQSIFVVIVVDAIAALFCMEMGW
>NC_011662.2|WP_041589627.1|1276894_1277590_+|CerR-family-C-terminal-domain-containing-protein
MSDLAEHARTVRGRGRPRGPDANYRARLLDAALDAFGAQGFEAAGLRAIAASAGCDVSMVAHYFGSKAELWTAVVDRIEAQVRADLAALDMLSPAAGPIERRVVAAVEAMFVQAVRQPQAMRFVMRQMTDPGERLDELVARVVEPVHAVFLPLWQEAIDAGIFRMRSALALQTFVFGAISYAVAAAPVLVRMSGGEIDLARLQREFMDGLFARLARGEADADASDTAEEGR
>NC_011662.2|WP_041589797.1|1275579_1276641_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MTRSGRLAWLGAGVLVLAAAGAWQFLRPAPDDDSFVRGNGRIEATEVDVAAKAPGRVDAILVNEGDFVTRDDVIARMDVKSLQAQLAQARAEVANAHSARETARAQVAQRQADVTMAEAVLVQGRAEYDVARRTAARSQALLNDRATSAQKADDDAARARTAEASIHVAEARIVAARAGVRAAEAQVQQAEAAIRAAEAVVARLETEIADGELRAPRSGRVQYRVVQPGEVVGGGGKVVSLVDVGDVYMTFFLPEMAAGRVALGSEVRIVLDAAQAFVIPARVSYVASVAQFTPKTVETQSERQKMVFRVKARIDPELLARYPEQVKTGLPGMAHLRLDAQREWPPALQPRLP
>NC_011662.2|WP_083768721.1|1272598_1275472_-|ribosome-associated-ATPase/putative-transporter-RbbA
MPPVVRLVDVHHRYGDTHAADALTLDLPAGCMVGFIGPDGVGKSTWLGLVAGARRIQRGTVEVLGGDMADARHRARVCPRIAYMPQGLGKNLYPTLSVFENIDFFGRLFGQSAAERRRRIDTLLAATGMAAFADRPANKLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIARIRADRPGMSVLIATAYMEEAEGYDWLVAVDAGRVLATGTPAELRAAGGADTLEEAFIALLPEARRREHRRLEIPPIETGAVVIEARGLQMRFGDFVAVDDVNLQVRRGEIFGFLGSNGCGKSTTMKMLTGLLEPSAGEALLLGRRLDATNIETRRRVGYMSQSFSLYGELSVRQNLDLHARLFHLPADEAASRIAELARRFDLAPVMDIQPDALPLGLRQRLQLAVAVLHRPDVLILDEPTSGVDPVARDHFWALIADLSRKDGVTIFITTHFMNEAQRCDRISLMHAGRILASDTPAALAAARGCEGLEDAFISYLEEASGVAPPSATAPAATPDRDLRRSYKPITPPEPRRGSDASRDSGDADATARVAGTEASTPIPGTGIATRVAPTSRPADRLARFSLARLASFSAREATELRRDPVRLTLALLGSLVLMLVMGYGITMDVEDLHYAVLDHDRSVGSQSYTLRIAGSRYFLEQAPLEGHADLDARMRAGKLAMAIEIPPGFGRDLARGHAPQVAVWLDGSMPLRAELARAYVGGVHAQTLADVIAESGAGPVRALASVEPRYRYNPELLSLVSMVPKVIPLLLVFIPAMLTALGVVREKELGSILNVYTTPVTRLEFLLGKQLPYIALSMFNFALLFVLAVTLFQVPFKGSFLALATGALLYVTATTGLGLLASTLTNSQIAALAGTSIGTLLPAIQFSGLMDPVSALEGGGYWIGAIYPTTHFLTIASGTFSKALGFADLAGAFVPLALAIPVLTLLSALLLKKQAK
>NC_011662.2|WP_041589795.1|1271348_1272467_-|ABC-transporter-permease
MRNTWNLGLKEFRSLSRDLAMVFLIVFMFSASIYADARAKPESLSRAAIAVVDEDGSQLSGRIVAALQPPQFLPPEHVGLADMDRGLDAGRHTFVLDIPPNFQRDVLAGRSPALQLNIDATRQGQAQTGAAYIQNILADEVRAFVQRMRAPAPQPVELVPRAMFNPNLEASWFAAINAIINNVTMLGILLTGAALIREREHGTIEHLLVMPVTPLEIMLSKIWSMGVVVLLASSFSLQVMVKGVLGITVAGSALLFGAGTLLYLFAAASIGIYMGTIARSMPQFGLMSILILLPLQILSGGVTPRESMPEAIQAIMGLAPTTHYVSLAQSILFRGAGLDVVWPAFTMVAAIGAVFLALAHHRLRQTIGTMQN
>NC_011662.2|WP_012584890.1|1269379_1271326_-|polyhydroxyalkanoic-acid-synthase
MSPSAPKPPSGEVAPAPTRARRRSATTAPPGTAGKPARAARSDTASANTSSAQAGKSPARPAASAARSFAEPFAPPPPRNPLDRRVHAAIARATASVSPIALLLATVDWAGHLAVSPGKRMELADLAIVQTRRLLRYAQQLALAPAGSAAHECIEPPAQDRRFQAPEWHAWPFNLMHQSFLLGQEWWDAATHGVAGVSRHHEQVVAFAARQLLDLFSPGNFLPTNPVVLRQTLASGGMNLARGTIHAIEDFERLVSGAPPAGTEDFVVGRDVAVTAGKVVLRNRLVELIQYAPATADVYAEPVLIVPAWIMKYYILDLSPHNSLVKYLVERGHTVFCISWKNPGTEERELDMDDYLQLGFFAALDAINAIVPGQKVHATGYCLGGTLLAIAAAAMDRDGDARLGSMTLFTAQTDFTEPGELALFIDDSEVSLLEAQMEETGFLTAGQMAGAFQILRSNDLLWSRVVGEYLMGERTPMNDLMAWNADATRMPARMHSQYLRRLFLNDDLSEGRYPVGGKPVALSDIELPVFCVATLTDHVAPWRSVYKLHYLVPTEISFVLTSGGHNAGIVSEPGRPRRSFRMHTRPAGGNYVPPDDWLERTPEQEGSWWPAWSDWLAARSGARVAPPAIGAPDYPALDDAPGCYVHEK
>NC_011662.2|WP_012584889.1|1268040_1269009_-|D-2-hydroxyacid-dehydrogenase
MEKIVFLDRATLAPQIRLRRPSFAHDYAEHARTAPAEVVERLAGATIAILNKVRLDAAAIAQLPALRLVAVAATGTDCVDKAACAARGIAVCNIRGYARDTVPEHVFALLLALRRQLIPYRDDVLAGEWQRAGQFCFFNHPIHDLAGTRLGIVGAGDLGQRVATIARAFGMEPVFAARKGERPGDDSYLAWDEVLATSDVISLHCPLTEATRGLVGLPEFRAMARRPLLINTARGGIVDEHALVQALDEGLISGAGFDVTDGEPPAPDSPLMRIAGRPNVLLTPHIAWASDEAQQALADQLVDVIEKFVAGQPKNLVSGGFA
>NC_011662.2|WP_012584898.1|1281923_1282814_-|polyphosphate-kinase-2-family-protein
MSKHKPIDIAEFRVEGGKKVDLADWPTKVRAVYDSKSDYEERLDAGTERLAELQEMLYAHDRYSLLVIFQAMDAAGKDGAIRHVMSGINPQGCQVFSFKHPSPTELDHDFLWRTHVALPERGRIGIFNRSYYEEVLIVRVLPEILRGQQLPDETLAARDFWGERFRSIVDAEAHLHRNGTRIVKIFLHLSKDEQRDRLIARIDEEDKNWKFDEGDIEQRKHWDKYMAAYADCLRATSTPDCPWYVVPADDKKNARLIVSQILVDTLAGLDLHYPETSPARREKLLEIRRQLEAGEV
>NC_011662.2|WP_012584899.1|1283092_1285807_-|cation-transporting-P-type-ATPase
MSPRTAQLSPIENAHARAADEVLAALDSSPTGLSADEAARRLAEIGPNRLPEPPRDGVVKRFFKHFNDVLIYVLLGAAAITASLGHWIDTGVILGVVVINAIIGFIQEGKAEEALAGIRKMLSLRAEACRDGHWSAVDADGLVPGDIVRLRSGDRVPADVRLIETTNLRIEESALTGESVPADKNTAAVEAAAGVGDRVGMAYSGTLVAAGRGIGVAVATGPDTELGRIDRLIAEVQPLQTPLTRQMAQFSKILSVLIVGLALLMLGVGLAVHEQPLAEVFLAAIGFAVAAIPEGLPAILTITLALGVQRMARRNAITRKLTAVEALGSVTVICSDKTGTLTKNEMTVRHVLTRGGFYEVSGTGYRPEGEITLEGKVASLAHHDHLHALIEVVAVANDTHVAEEDGQWKVTGEPTEGALRTLAHKAGFDAGAHQRHDSIPFESANKFMATLDTAPCGQRRILLKGAPDRLLERCRHELGADGELVALDRAFWEERIDALSGEGLRVLAAAARDVPDSKDALVIEDLQEDMVFLGLIGIIDPPRPEAIAAIRSCHEAGIRVKMITGDHAGTARAIGIEMGLGTADALKVITGAEIEAASDEELQRIAHDCDLFARTSPEHKLRLVEALQARGEVVAMTGDGVNDAPALKRADVGVAMGIKGTEATKEAAEIVLADDNFSTIERAVEEGRTIYDNLRKAILFILPTNGAQGFVMLAAVVLGLTLPLTPVQILWVNMVVAVTLALALAFEPAEPGVMQRPPRRPGAPIMDGAMLWRVGFVSLLIGGATIVSFEYSLLQGMELQAARTMAVNTLVVAQAWYLFNSRFLTASSLAPARLFTNPAAQVSVLILALLQLGFVYLPFMNTWFGTTPLALEYWLPPLAIGALVFLVIEAEKALQRRYGARKSG
>NC_011662.2|WP_012584900.1|1285998_1287414_-|hypothetical-protein
MRKRDTTLSTDQKALAINLDKYKYGSIVEIGAGQEVARRFFHVGAAAGTIAKTMSAYDMAVSDDIYGHVDRYVSRARLLQMLDKEFTQVVARLAHVRPKNTTFFAYAATVTARSFKQKNECHGWVGIRLQLHPGAAPSDVVMHVRMLDNDNALQSEALGILGVNLIHGAFFHHDQPEWVVEGLADGLGSERIEVDLIHFSGPYFDEVENRLMNLHLIRSWLTRAVVFNPQGEVVVPGELLYRKPVMVMRGSFKPVTLVNVDMMAAGLRQFSQLAAVDDKEIVSLAEITMNSLISGDNVDGADFLARIDLLASQGYTVMISDYVRFFRLRAYLRRYTQKPIGIVLSVRDFAFLFDEKYYEGLEGGILEAFGKLFPDNTHVYVYPSRPRGTDASATVTLDNVAVPANLRHLLAHLKENDKLVAVQPHDDTHLHIDIGEVLTGLRRGRGEWETDVPEAVAQRIIEGHLLGYDTE
>NC_011662.2|WP_012584901.1|1287448_1288270_-|NADPH-dependent-oxidoreductase
MPPPSSRLQARYGQESIPTEIALNPLIEHLLDHRSVRAYLPNPVTDAELAAIVAAAQSAASSSNLNVWSVVAVRDAERRARLAELAGNQAHVREAPLQLVWLADLARLRRIATGLGRPAEGLDYLEMFLTGVIDAALAAQNGAAAAESLGLGMVYIGGMRNRPEDVAELLGLPPGVFAVFGMCVGRPDPARPADIKPRPPQAVVLHHERYALAAQDAGIAAYDRAMERFYAEQKMNVHGTWSVHSSKRIAGPETLSGRHRLVEALQALGFALK
>NC_011662.2|WP_004302482.1|1288529_1290221_+|AMP-binding-protein
MSAVNEFLAARDFLLQHRSDYATAYAGFKWPKLKEFNWALDYFDAMAKGNDNPALWIIEEDGRESKLSFAEMSARSNRVANWLRKQGVKRGERILIMLGNEVPLWETMLAAIKLGAVVIPATTLLTPEDLVDRVERGQVRHVVIGKAHTDKFENLPGSFGRIAVGGAPAGWKAFEDAAAESDAFTPDGVTRVDDPLLLYFTSGTTSKPKLVLHTHQSYPVGHLSTMYWIGLKPNDRHMNISSPGWAKHAWSCFFAPWNAGACVFLYNYNRFNAAALLDVLVKYEVTTMCAPPTVWRMLIQQDLASVKTKLRELIGAGEPLNPEVIDQVKKAWGITIRDGFGQTETTAQIGNTPDQPLKPGSMGRPLPGYKIALLDAESKPSVEGEVALVMGEHRPVGLMVGYSGDPAKTAEVMRDGHYRTGDVASIDEDGYITYVGRADDVFKASDYRISPFELESVLIEHPAVAEAAVVPSPDPLRLAVPKAFVILVAGQEPSRELAKDIFAFTRERLAPYKRIRRLSFADLPKTISGKIRRVELRKAEEARGEAARGELEFFEEDFPELKG
>NC_011662.2|WP_012584902.1|1290494_1291397_-|ZIP-family-metal-transporter
MVDKVARLHFQHASPAGALRALSGWLIAITGLALLVAQLVRSVEGFDLAVTGAMAGGAMAAAATALGAVPLLVVRQIGASVQGMLLGFGAGVMLAASVFSLLLPGFDAALAQTGSETGAALLVAFGVLLGAGGLLAMDRALPHTHFPEGRRSGAAVWLFVFAIAVHNIPEGLAIGVAAGLEGTGAGSGDAVAAGISLQNVPEGLIVAIALVAAGYGRWLAFGVAAASGLIEPIAAIAGSMMVSVSANILPWGLAGAAGAMLFVVSHEIIPESHRRGHETLATGGLMVGFVMMMLMDTLLG
>NC_011662.2|WP_004302479.1|1291609_1292512_+|acetylglutamate-kinase
MTQPVHQQDVTPARKAEILAEALPYIKRFFDKTIVIKYGGNAMTDPHLKDCFARDVVLLKLVGLNPVVVHGGGPQIENLLTRMGKKGEFIQGMRVTDAETMEVVEMVLGGQVNKEIVNLINKHGGKAVGLTGKDAGFIRAKKLLMQKHGAPEGDLIDVGQVGEITGIDPSLISFLDQGDFIPVIAPIGVGEEGETYNINADVVAGKLAEILKAEKLVLLTNTPGVLDKAGNLLTGLTPRQIDDLVADGTLSGGMLPKIGSALDAARNGVKSVHIIDGRVEHCLLLEILTDHGVGTMIKSK
>NC_011662.2|WP_004302477.1|1292792_1293230_-|Hsp20/alpha-crystallin-family-protein
MSNPLTRRTDPLDDFFRGFFVRPVDFGGQQLATPGTDAPQMRVDVKETAQGYEVHAELPGMKKEDIHVHIDGPVVSISAERKQEKEIKDGEKVLRTERYFGKISRSFQLGQEIDEAAASAKFNDGVLELNLPKKAEVQAKRLNIE
>NC_011662.2|WP_004302475.1|1293388_1293592_+|cysteine-rich-CWC-family-protein
MNETTNVCPRCGAAFTCGMRAGEAECWCAALPAAFAVPAEGAGECYCPRCLAELIEARRKVPREARG
>NC_011662.2|WP_004302473.1|1293548_1293914_-|barstar-family-protein
MSHTSHAPAAQPTPPLRIDLAGCTDKAGLLARIATALRFPDWFGHNWDALSDCLCDLSWLPAAAYRLEFLHADALRATAPETFATLCEILDEAGDFWRAEGVGFGHTFIPALPEAPSGAPR

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Crispr_ID: NC_011662_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_4

1292561-1292641

Orphan

Consensus_repeat	Method
TCGCGACTTGCGTCGCTCCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011662_4

>merge|NC_011662|4|1292561-1292641|CRISPRCasFinder
TCGCGACTTGCGTCGCTCCTACGAAAACCGGCGAGGCCTCGGGGGCGCTGCAGGGGGATCGCGACTTGCGTCGCTCCTACG

>NC_011662|4|4|1292561-1292641|CRISPRCasFinder
TCGCGACTTGCGTCGCTCCTACG	AAAACCGGCGAGGCCTCGGGGGCGCTGCAGGGGGA
TCGCGACTTGCGTCGCTCCTACG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_012584901.1\|1287448_1288270_-\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NC_011662.2\|WP_004302471.1\|1293925_1294330_-\|ribonuclease	unknown	unknown	gnl\|CDD\|238340
NC_011662.2\|WP_012584899.1\|1283092_1285807_-\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
NC_011662.2\|WP_012584896.1\|1278740_1279577_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224052
NC_011662.2\|WP_012584897.1\|1280516_1281260_+\|membrane-integrity-associated-transporter-subunit-PqiC	unknown	unknown	gnl\|CDD\|225759
NC_011662.2\|WP_004302462.1\|1299148_1300000_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NC_011662.2\|WP_012584900.1\|1285998_1287414_-\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_004302469.1\|1294336_1295986_-\|response-regulator	unknown	unknown	gnl\|CDD\|381123
NC_011662.2\|WP_004326372.1\|1279578_1280520_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|224380
NC_011662.2\|WP_004302477.1\|1292792_1293230_-\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|107228
NC_011662.2\|WP_004302460.1\|1300004_1301234_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NC_011662.2\|WP_012584902.1\|1290494_1291397_-\|ZIP-family-metal-transporter	unknown	unknown	gnl\|CDD\|223505
NC_011662.2\|WP_012584903.1\|1298727_1298991_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|274226
NC_011662.2\|WP_012584898.1\|1281923_1282814_-\|polyphosphate-kinase-2-family-protein	unknown	unknown	gnl\|CDD\|274737
NC_011662.2\|WP_004302473.1\|1293548_1293914_-\|barstar-family-protein	unknown	unknown	gnl\|CDD\|376530
NC_011662.2\|WP_004302475.1\|1293388_1293592_+\|cysteine-rich-CWC-family-protein	unknown	unknown	gnl\|CDD\|379586
NC_011662.2\|WP_004302479.1\|1291609_1292512_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869
NC_011662.2\|WP_004302465.1\|1298018_1298645_-\|DUF502-domain-containing-protein	unknown	unknown	gnl\|CDD\|225480
NC_011662.2\|WP_004302467.1\|1296131_1297931_-\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NC_011662.2\|WP_004302482.1\|1288529_1290221_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341278

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_012584901.1\|1287448_1288270_-\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	9.77406e-106
NC_011662.2\|WP_004302471.1\|1293925_1294330_-\|ribonuclease	gnl\|CDD\|238340	cd00607, RNase_Sa, RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.	5.32887e-43
NC_011662.2\|WP_012584899.1\|1283092_1285807_-\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NC_011662.2\|WP_012584896.1\|1278740_1279577_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	1.84566e-134
NC_011662.2\|WP_012584897.1\|1280516_1281260_+\|membrane-integrity-associated-transporter-subunit-PqiC	gnl\|CDD\|225759	COG3218, COG3218, ABC-type uncharacterized transport system, auxiliary component [General function prediction only].	1.52e-43
NC_011662.2\|WP_004302462.1\|1299148_1300000_-\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	2.12097e-54
NC_011662.2\|WP_004302465.1\|1298018_1298645_-\|DUF502-domain-containing-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	7.5612e-81
NC_011662.2\|WP_004302469.1\|1294336_1295986_-\|response-regulator	gnl\|CDD\|381123	cd17589, REC_TPR, phosphoacceptor receiver (REC) domain of uncharacterized tetratricopeptide repeat (TPR)-containing response regulators. Response regulators share the common phosphoacceptor REC domain and different output domains. This subfamily contains uncharacterized response regulators with TPR repeats as the effector or output domain, which might contain between 3 to 16 TPR repeats (each about 34 amino acids). TPR-containing proteins occur in all domains of life and the abundance of TPR-containing proteins in a bacterial proteome is not indicative of virulence. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. Some members in this subfamily may contain inactive REC domains lacking canonical metal-binding and active site residues.	1.86664e-39
NC_011662.2\|WP_004326372.1\|1279578_1280520_+\|MCE-family-protein	gnl\|CDD\|224380	COG1463, Ttg2C, ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	1.85112e-33
NC_011662.2\|WP_004302477.1\|1292792_1293230_-\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|107228	cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic membrane.	3.45194e-33
NC_011662.2\|WP_004302460.1\|1300004_1301234_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	2.03594e-144
NC_011662.2\|WP_012584902.1\|1290494_1291397_-\|ZIP-family-metal-transporter	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	5.84086e-37
NC_011662.2\|WP_012584903.1\|1298727_1298991_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|274226	TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (SP:Q50229, ). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors. [Regulatory functions, DNA interactions].	6.4352e-22
NC_011662.2\|WP_012584898.1\|1281923_1282814_-\|polyphosphate-kinase-2-family-protein	gnl\|CDD\|274737	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which. [Central intermediary metabolism, Phosphorus compounds].	3.69118e-160
NC_011662.2\|WP_004302473.1\|1293548_1293914_-\|barstar-family-protein	gnl\|CDD\|376530	pfam01337, Barstar, Barstar (barnase inhibitor).	1.15059e-31
NC_011662.2\|WP_004302475.1\|1293388_1293592_+\|cysteine-rich-CWC-family-protein	gnl\|CDD\|379586	pfam14375, Cys_rich_CWC, Cysteine-rich CWC. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 74 and 102 amino acids in length. It contains eight conserved cysteines, including a conserved CWC sequence motif.	6.68199e-05
NC_011662.2\|WP_004302479.1\|1291609_1292512_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	4.74362e-167
NC_011662.2\|WP_004302467.1\|1296131_1297931_-\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NC_011662.2\|WP_004302482.1\|1288529_1290221_+\|AMP-binding-protein	gnl\|CDD\|341278	cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria.	0

>NC_011662.2|WP_004302479.1|1291609_1292512_+|acetylglutamate-kinase
MTQPVHQQDVTPARKAEILAEALPYIKRFFDKTIVIKYGGNAMTDPHLKDCFARDVVLLKLVGLNPVVVHGGGPQIENLLTRMGKKGEFIQGMRVTDAETMEVVEMVLGGQVNKEIVNLINKHGGKAVGLTGKDAGFIRAKKLLMQKHGAPEGDLIDVGQVGEITGIDPSLISFLDQGDFIPVIAPIGVGEEGETYNINADVVAGKLAEILKAEKLVLLTNTPGVLDKAGNLLTGLTPRQIDDLVADGTLSGGMLPKIGSALDAARNGVKSVHIIDGRVEHCLLLEILTDHGVGTMIKSK
>NC_011662.2|WP_012584902.1|1290494_1291397_-|ZIP-family-metal-transporter
MVDKVARLHFQHASPAGALRALSGWLIAITGLALLVAQLVRSVEGFDLAVTGAMAGGAMAAAATALGAVPLLVVRQIGASVQGMLLGFGAGVMLAASVFSLLLPGFDAALAQTGSETGAALLVAFGVLLGAGGLLAMDRALPHTHFPEGRRSGAAVWLFVFAIAVHNIPEGLAIGVAAGLEGTGAGSGDAVAAGISLQNVPEGLIVAIALVAAGYGRWLAFGVAAASGLIEPIAAIAGSMMVSVSANILPWGLAGAAGAMLFVVSHEIIPESHRRGHETLATGGLMVGFVMMMLMDTLLG
>NC_011662.2|WP_004302482.1|1288529_1290221_+|AMP-binding-protein
MSAVNEFLAARDFLLQHRSDYATAYAGFKWPKLKEFNWALDYFDAMAKGNDNPALWIIEEDGRESKLSFAEMSARSNRVANWLRKQGVKRGERILIMLGNEVPLWETMLAAIKLGAVVIPATTLLTPEDLVDRVERGQVRHVVIGKAHTDKFENLPGSFGRIAVGGAPAGWKAFEDAAAESDAFTPDGVTRVDDPLLLYFTSGTTSKPKLVLHTHQSYPVGHLSTMYWIGLKPNDRHMNISSPGWAKHAWSCFFAPWNAGACVFLYNYNRFNAAALLDVLVKYEVTTMCAPPTVWRMLIQQDLASVKTKLRELIGAGEPLNPEVIDQVKKAWGITIRDGFGQTETTAQIGNTPDQPLKPGSMGRPLPGYKIALLDAESKPSVEGEVALVMGEHRPVGLMVGYSGDPAKTAEVMRDGHYRTGDVASIDEDGYITYVGRADDVFKASDYRISPFELESVLIEHPAVAEAAVVPSPDPLRLAVPKAFVILVAGQEPSRELAKDIFAFTRERLAPYKRIRRLSFADLPKTISGKIRRVELRKAEEARGEAARGELEFFEEDFPELKG
>NC_011662.2|WP_012584901.1|1287448_1288270_-|NADPH-dependent-oxidoreductase
MPPPSSRLQARYGQESIPTEIALNPLIEHLLDHRSVRAYLPNPVTDAELAAIVAAAQSAASSSNLNVWSVVAVRDAERRARLAELAGNQAHVREAPLQLVWLADLARLRRIATGLGRPAEGLDYLEMFLTGVIDAALAAQNGAAAAESLGLGMVYIGGMRNRPEDVAELLGLPPGVFAVFGMCVGRPDPARPADIKPRPPQAVVLHHERYALAAQDAGIAAYDRAMERFYAEQKMNVHGTWSVHSSKRIAGPETLSGRHRLVEALQALGFALK
>NC_011662.2|WP_012584900.1|1285998_1287414_-|hypothetical-protein
MRKRDTTLSTDQKALAINLDKYKYGSIVEIGAGQEVARRFFHVGAAAGTIAKTMSAYDMAVSDDIYGHVDRYVSRARLLQMLDKEFTQVVARLAHVRPKNTTFFAYAATVTARSFKQKNECHGWVGIRLQLHPGAAPSDVVMHVRMLDNDNALQSEALGILGVNLIHGAFFHHDQPEWVVEGLADGLGSERIEVDLIHFSGPYFDEVENRLMNLHLIRSWLTRAVVFNPQGEVVVPGELLYRKPVMVMRGSFKPVTLVNVDMMAAGLRQFSQLAAVDDKEIVSLAEITMNSLISGDNVDGADFLARIDLLASQGYTVMISDYVRFFRLRAYLRRYTQKPIGIVLSVRDFAFLFDEKYYEGLEGGILEAFGKLFPDNTHVYVYPSRPRGTDASATVTLDNVAVPANLRHLLAHLKENDKLVAVQPHDDTHLHIDIGEVLTGLRRGRGEWETDVPEAVAQRIIEGHLLGYDTE
>NC_011662.2|WP_012584899.1|1283092_1285807_-|cation-transporting-P-type-ATPase
MSPRTAQLSPIENAHARAADEVLAALDSSPTGLSADEAARRLAEIGPNRLPEPPRDGVVKRFFKHFNDVLIYVLLGAAAITASLGHWIDTGVILGVVVINAIIGFIQEGKAEEALAGIRKMLSLRAEACRDGHWSAVDADGLVPGDIVRLRSGDRVPADVRLIETTNLRIEESALTGESVPADKNTAAVEAAAGVGDRVGMAYSGTLVAAGRGIGVAVATGPDTELGRIDRLIAEVQPLQTPLTRQMAQFSKILSVLIVGLALLMLGVGLAVHEQPLAEVFLAAIGFAVAAIPEGLPAILTITLALGVQRMARRNAITRKLTAVEALGSVTVICSDKTGTLTKNEMTVRHVLTRGGFYEVSGTGYRPEGEITLEGKVASLAHHDHLHALIEVVAVANDTHVAEEDGQWKVTGEPTEGALRTLAHKAGFDAGAHQRHDSIPFESANKFMATLDTAPCGQRRILLKGAPDRLLERCRHELGADGELVALDRAFWEERIDALSGEGLRVLAAAARDVPDSKDALVIEDLQEDMVFLGLIGIIDPPRPEAIAAIRSCHEAGIRVKMITGDHAGTARAIGIEMGLGTADALKVITGAEIEAASDEELQRIAHDCDLFARTSPEHKLRLVEALQARGEVVAMTGDGVNDAPALKRADVGVAMGIKGTEATKEAAEIVLADDNFSTIERAVEEGRTIYDNLRKAILFILPTNGAQGFVMLAAVVLGLTLPLTPVQILWVNMVVAVTLALALAFEPAEPGVMQRPPRRPGAPIMDGAMLWRVGFVSLLIGGATIVSFEYSLLQGMELQAARTMAVNTLVVAQAWYLFNSRFLTASSLAPARLFTNPAAQVSVLILALLQLGFVYLPFMNTWFGTTPLALEYWLPPLAIGALVFLVIEAEKALQRRYGARKSG
>NC_011662.2|WP_012584898.1|1281923_1282814_-|polyphosphate-kinase-2-family-protein
MSKHKPIDIAEFRVEGGKKVDLADWPTKVRAVYDSKSDYEERLDAGTERLAELQEMLYAHDRYSLLVIFQAMDAAGKDGAIRHVMSGINPQGCQVFSFKHPSPTELDHDFLWRTHVALPERGRIGIFNRSYYEEVLIVRVLPEILRGQQLPDETLAARDFWGERFRSIVDAEAHLHRNGTRIVKIFLHLSKDEQRDRLIARIDEEDKNWKFDEGDIEQRKHWDKYMAAYADCLRATSTPDCPWYVVPADDKKNARLIVSQILVDTLAGLDLHYPETSPARREKLLEIRRQLEAGEV
>NC_011662.2|WP_012584897.1|1280516_1281260_+|membrane-integrity-associated-transporter-subunit-PqiC
MRSSSFLPRRGAGPARPRRAFAAAALCVIALLPACSVLPEAAPLDVYVLPVSTGAPGASANMSPGNPIASPAATSTPAGGAPSASAAARALPWSLRVVRPAAGVHLAGQRIVVMPEGNRVSVYQGAGWSDPAPALLRDRLLEAFRADGRVGALSSDERQLHADFELDSDLRAFQSEYRGGRPEAVLRLDARLVHTASRRIVASRTFEQRQPTADPAVPAVVQAFGAAADRLSAEVVEWTVREAAAVR
>NC_011662.2|WP_004326372.1|1279578_1280520_+|MCE-family-protein
METRAHHVLIGLFTVLVVGAALMFALWLGKSDADRQFEVYDIVFQEAVSGLSKGGTVEFNGIKIGDVVSLRLDPADARRVIARVRVDSAAPVRSDTRARLVPAGITGLTMIRLTSGEDPASTPLVSKGDEVARIIAAPSPLSRLLADGEDAITNVNDLLVQARELLSADNVASFGRTLGNLELATGALAAQREDLNAALREVTQASRDASTALAEAARMLGSANRLVEVQGTQTLDSARDAMRAFERAMGTVDRLIADNRAPLDGGMRGLAEIGPAVAELRTTLASLRIITRQLESRPADYLLGLEPTKEFTP
>NC_011662.2|WP_012584896.1|1278740_1279577_+|ATP-binding-cassette-domain-containing-protein
MTAGLASAASDPRDNIVEVRGVRNQFGSQVVHDQLDLDVRRGEILSVVGGSGTGKSVLLRTIVGLNRPRAGSVHVFGEDLLSLPDARRKQVERRFGVLFQKGALFSSLTVAENVALPLIEHAGMSRREAAELAALKIALAGLPALAGDKFPSDLSGGMVKRAALARALALDPDILFLDEPTAGLDPIGAAAFDQLILTLRDALGLTVFIVTHDLDTIYTITDRVAVLAQKKVLVNAGLDEVAAIDDAWIREYFHGPRGRAAATAVAAAQAVPAASENN
>NC_011662.2|WP_004302477.1|1292792_1293230_-|Hsp20/alpha-crystallin-family-protein
MSNPLTRRTDPLDDFFRGFFVRPVDFGGQQLATPGTDAPQMRVDVKETAQGYEVHAELPGMKKEDIHVHIDGPVVSISAERKQEKEIKDGEKVLRTERYFGKISRSFQLGQEIDEAAASAKFNDGVLELNLPKKAEVQAKRLNIE
>NC_011662.2|WP_004302475.1|1293388_1293592_+|cysteine-rich-CWC-family-protein
MNETTNVCPRCGAAFTCGMRAGEAECWCAALPAAFAVPAEGAGECYCPRCLAELIEARRKVPREARG
>NC_011662.2|WP_004302473.1|1293548_1293914_-|barstar-family-protein
MSHTSHAPAAQPTPPLRIDLAGCTDKAGLLARIATALRFPDWFGHNWDALSDCLCDLSWLPAAAYRLEFLHADALRATAPETFATLCEILDEAGDFWRAEGVGFGHTFIPALPEAPSGAPR
>NC_011662.2|WP_004302471.1|1293925_1294330_-|ribonuclease
MLRTVLLRLLLLLVLGAGLPACSPGAAPDAPQAAQGLLQPSHAGLPAEAIETLALIQRGGPFPYRKDGTTFQNRERLLPARPRGYYREYTVPTPGARDRGARRIVSGGDPPEVFYYTADHYRSFREIAPLRSLP
>NC_011662.2|WP_004302469.1|1294336_1295986_-|response-regulator
MLLPHGLQVLVVESQSSMRAQLRNMLASIGIDSPQFAVSASMAMRRLRAQPFDLILSEYDLGEGQDGQHLLEDLRQHAIIPPDTVFVMITGERNYERVISACELVPNDYILKPLTAESLRVRLLRAFEKRDAFLPVWQLMKLGDPVGALAACREARDRHPQYLVDFMRLQAELHAQIGQIEEAAALYREILAARPIPWASLGLARMLVVREAWVEAEHLLADLVARHPRFIEAHELLARVQEETGRPAEACGTLQRAADLSPYRLPRLRRLGELALQAGELDRAEHSLAEAVRRGSYSEFRDPEDHVRLVQAQLARERPDEALATLADLERNLVRHPKGELCLAVGNALFEGHRNDAEGLRSAMVRALASPERIRELSPGLRRDLLELCYDRKLESEGRQLLADLMRTHGDDRSLASTRAALKARGFENLSAEVEEQVQNEVRTLIGAGAEKARSGDYDGAVAEMMNAARKMPGNPHVLFNAALALLRHIEHRGWNEAFAAQARSLIERTQRMAPANPRLAAITEFRHELMKRYGIRPERAPVTRTRRA
>NC_011662.2|WP_004302467.1|1296131_1297931_-|aspartate--tRNA-ligase
MRTHYCGKVTAADLDQIVTICGWVHRRRDHGGVIFIDLRDREGLVQVVCDPDRAEMFKTAESVRNEFVLKLSGKVRRRPAGTENANLVSGEIEILCHDIEVLNAAATPPFQLDDENLSETVRLTNRVIDLRRPQMQKNLMLRYKTTMAFRRFLDGAGFIDVETPMLTKSTPEGARDYLVPSRVHPGQFFALPQSPQLFKQLLMVAGYDRYYQIVKCFRDEDLRADRQPEFTQVDLETSFMNEHEITALVEEMIRYVFKEAMAVELPAPFPRMTYAEAMRRYGSDKPDLRVTLELTDVTDAVQDVAFKVFSGPATSGGRVAAMRVPGGNSLTRGEIDEYTKFVAIYGARGLAYIKVNDVTQPNEHGLQSPIVKNLHETALRTILERTGAQSGDLIFFGADKTKVVNDAMGALRIKLGHEKGYVTGEAWRPLWVVDFPMFEYDEDDKRWTACHHPFTSPKDEHIDLLESNPGECLAKAYDLALNGWEIGGGSVRIHRADVQARVFEALNIGPEEQQAKFGFLLDALKYGAPPHGGLAFGLDRIVTMMTGAESIRDVIAFPKTQRAQCLLTDAPSGVDEKQLRELHIRLRQKVETQVEVERG
>NC_011662.2|WP_004302465.1|1298018_1298645_-|DUF502-domain-containing-protein
MKKYFITGLLIWLPLAITYMVIAWIVGTLDAILLWLPAEYQPSRYIGFDIPGVGVVASLLLVFFTGLVAANVLGQKLVQLWEALLARIPVVKSIYYSVKQVSDTVFSSNGQAFRKALLVQYPREGVWTIAFLTGQPGGDAAEHLRGDYVSVYVPTTPNPTSGFFLMMRRSEVVELDMSVDDALKYIISMGVVAPPARRPEPVPALSDT
>NC_011662.2|WP_012584903.1|1298727_1298991_-|zinc-ribbon-domain-containing-protein
MPIYEYRCPSCGFQKEHLQKMSDEPLSVCPSCGTTGYAKQLSAAGFQLKGSGWYATDFKGGAKSAAPAAESTPSPATGGCGGGCACH
>NC_011662.2|WP_004302462.1|1299148_1300000_-|prepilin-peptidase
MIELLRDPLAFTILSGLVGLFVGSFLNVVIHRLPRMMERDWHAQAAELRGEQAPANERFNLATPRSRCPHCGHQITMLENIPIVSYVVLRGRCAHCGAGISRRYPIVEALSALLSAYAAWHFGFGASALGALLFVWAMVALTFIDLDTQLLPDDITLPLLWLGLAFNLGTTFAELPDAVIGAMAGYLALWAVFWLFKLATGKEGMGYGDFKLLAAIGAWLGWQMLPLTILLSSLVGAVVGILLIVVARHGRNVPIPFGPYLAAAGLIALFWGERITERYLGLL
>NC_011662.2|WP_004302460.1|1300004_1301234_-|type-II-secretion-system-F-family-protein
MATASRAARATGPREDLYIWEGKDKTGKVVRGEIRATGDAMVQAMLRRQGIQVIKIRKQKMARGGRISEKDIALFTRQLATMMKSGVPLLQAFDIAMKGSGNAALVRLLNDIRTDVETGSNLSQAFAKHPAHFDRLFCNLVAAGEQAGILDGLLDRIATYKEKILAIKSKIKSALFYPAAVVVVAGLVISVMMLFVIPEFKSVFSSFGAELPVPTLMVIAISDAFVAYWYLIFGALIAALVAIAWSYKRSTAMQIAVDRLVLRIPVIGAIIRKATVARWTRTLSTMFAAGVPLVEALDSVGGASGNHVYVVATHQIQSEVSTGTSLTVAMQNAEVFPTMVVQMVSIGEESGQLDAMLGKVADFFEQEVDDAVAGLSQLLEPLIMVFLGTIIGGLVVAMYLPIFKLGSVV

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Crispr_ID: NC_011662_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_5

1322663-1322824

Orphan

Consensus_repeat	Method
TGTAGGAGCGGCGCAAGCCGCGAACCCGGCGCCCGGCATCAGAGCCGCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011662_5

>merge|NC_011662|5|1322663-1322824|CRISPRCasFinder
TGTAGGAGCGGCGCAAGCCGCGAACCCGGCGCCCGGCATCAGAGCCGCCGCCGCTCCACCGCCGTATTCGCGCCTGGCGGCGCTCCCACAGGAAACGTTGCGGCTTCCCTTTGTAGGAGCGGCGCAAGCCGCGAACCCGGCGCCCGGCATCAGAGCCGCCGC

>NC_011662|5|5|1322663-1322824|CRISPRCasFinder
TGTAGGAGCGGCGCAAGCCGCGAACCCGGCGCCCGGCATCAGAGCCGCCGC	CGCTCCACCGCCGTATTCGCGCCTGGCGGCGCTCCCACAGGAAACGTTGCGGCTTCCCTT
TGTAGGAGCGGCGCAAGCCGCGAACCCGGCGCCCGGCATCAGAGCCGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_004323472.1\|1322884_1323493_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
NC_011662.2\|WP_012584909.1\|1319220_1321116_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NC_011662.2\|WP_187283028.1\|1321451_1321643_-\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_004302438.1\|1312990_1313569_+\|peroxidase-related-enzyme	unknown	unknown	gnl\|CDD\|130981
NC_011662.2\|WP_012584911.1\|1326707_1327985_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NC_011662.2\|WP_004302441.1\|1310585_1311830_-\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|240081
NC_011662.2\|WP_004302433.1\|1315931_1316753_-\|fibro-slime-domain-containing-protein	unknown	unknown	gnl\|CDD\|162730
NC_011662.2\|WP_004323469.1\|1324054_1324543_-\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|272853
NC_011662.2\|WP_004302431.1\|1317170_1319171_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NC_011662.2\|WP_004323466.1\|1325584_1326073_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NC_011662.2\|WP_002924646.1\|1321276_1321489_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NC_011662.2\|WP_012584912.1\|1329124_1329652_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225527
NC_011662.2\|WP_004323467.1\|1324658_1325588_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NC_011662.2\|WP_004302443.1\|1309416_1310484_-\|response-regulator	unknown	unknown	gnl\|CDD\|225971
NC_011662.2\|WP_004323464.1\|1326087_1326672_-\|chalcone-isomerase-family-protein	unknown	unknown	gnl\|CDD\|374318
NC_011662.2\|WP_012584913.1\|1329663_1332291_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NC_011662.2\|WP_012584907.1\|1314156_1315845_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341278
NC_011662.2\|WP_004323460.1\|1328094_1329105_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
NC_011662.2\|WP_004323471.1\|1323660_1324035_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|214902
NC_011662.2\|WP_004302439.1\|1311970_1312954_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|176248

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_004323472.1\|1322884_1323493_-\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	5.93974e-80
NC_011662.2\|WP_012584909.1\|1319220_1321116_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NC_011662.2\|WP_004302438.1\|1312990_1313569_+\|peroxidase-related-enzyme	gnl\|CDD\|130981	TIGR01926, peroxid_rel, uncharacterized peroxidase-related enzyme. This protein family with length of about 200 amino acids. One member, from Myxococcus xanthus, is a selenoprotein, with an otherwise conserved Cys replaced by Sec. This family is drawn narrowly enough to suggest that These proteins contain a domain described by TIGR00778, with a CxxCxxxHxxxxxxxG motif. Some members of that family are known to act as peroxidases or correlate with resistance to oxidative stress.	1.09308e-75
NC_011662.2\|WP_004302441.1\|1310585_1311830_-\|nitronate-monooxygenase	gnl\|CDD\|240081	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	7.45461e-45
NC_011662.2\|WP_012584911.1\|1326707_1327985_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NC_011662.2\|WP_004302433.1\|1315931_1316753_-\|fibro-slime-domain-containing-protein	gnl\|CDD\|162730	TIGR02148, ORFveg106_random, fibro-slime domain. This model represents a conserved region of about 90 amino acids, shared in at least 4 distinct large putative proteins from the slime mold Dictyostelium discoideum and 10 proteins from the rumen bacterium Fibrobacter succinogenes, and in no other species so far. We propose here the name fibro-slime domain.	3.23532e-25
NC_011662.2\|WP_004323469.1\|1324054_1324543_-\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|272853	TIGR00011, Putative_Cys-tRNAPro/Cys-tRNACys_deacylase_EbsC, Cys-tRNA(Pro) deacylase. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434) likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism. [Protein synthesis, tRNA aminoacylation].	1.69049e-59
NC_011662.2\|WP_004302431.1\|1317170_1319171_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NC_011662.2\|WP_004323466.1\|1325584_1326073_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	6.99932e-38
NC_011662.2\|WP_002924646.1\|1321276_1321489_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	1.41411e-18
NC_011662.2\|WP_012584912.1\|1329124_1329652_-\|hypothetical-protein	gnl\|CDD\|225527	COG2980, RlpB, Rare lipoprotein B [Cell envelope biogenesis, outer membrane].	1.37733e-29
NC_011662.2\|WP_004323467.1\|1324658_1325588_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	6.58906e-153
NC_011662.2\|WP_004302443.1\|1309416_1310484_-\|response-regulator	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	8.44362e-111
NC_011662.2\|WP_004323464.1\|1326087_1326672_-\|chalcone-isomerase-family-protein	gnl\|CDD\|374318	pfam16036, Chalcone_3, Chalcone isomerase-like. Chalcone_3 is a family of largely bacterial members.	2.84077e-44
NC_011662.2\|WP_012584913.1\|1329663_1332291_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NC_011662.2\|WP_004323471.1\|1323660_1324035_+\|dihydroneopterin-aldolase	gnl\|CDD\|214902	smart00905, FolB, Dihydroneopterin aldolase. Dihydroneopterin aldolase catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. In the opportunistic pathogen Pneumocystis carinii, dihydroneopterin aldolase function is expressed as the N-terminal portion of the multifunctional folic acid synthesis protein (Fas). This region encompasses two domains, FasA and FasB, which are 27% amino acid identical. FasA and FasB also share significant amino acid sequence similarity with bacterial dihydroneopterin aldolases. This region consists of two tandem sequences each homologous to folB and which form tetramers.	2.90249e-33
NC_011662.2\|WP_004323460.1\|1328094_1329105_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	1.94289e-126
NC_011662.2\|WP_012584907.1\|1314156_1315845_+\|AMP-binding-protein	gnl\|CDD\|341278	cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS). MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria.	0
NC_011662.2\|WP_004302439.1\|1311970_1312954_+\|oxidoreductase	gnl\|CDD\|176248	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	0

>NC_011662.2|WP_187283028.1|1321451_1321643_-|hypothetical-protein
MPSTFIGMHPFDSVSHFNPPPPARAIRGLAIDGRLVYIRGLSAHQTPKEVRNARYPRQGKRAV
>NC_011662.2|WP_002924646.1|1321276_1321489_-|30S-ribosomal-protein-S21
MPGIRVKENEPFEVAIRRFKRTIEKTGVLTELRSREFYEKPTAERKRKLAAAVKRNHKRLRSQTLPPKLY
>NC_011662.2|WP_012584909.1|1319220_1321116_-|DNA-primase
MIPQSFVQELLSRVDIVDVIERYLPLKKSGANYFACCPFHGEKSASFSVSPSKQFYHCFGCGVHGSAVGFLMEYSGLGFVDAIKELAAQVGLQVPDDGRSAAPVHDDPSERLYEAMAVAARFYRDQLKPSRQAIDYLKRRGLSGEVAARFGLGYAPDEWQALEKAFPDYQAKTLADAGLVIDNEQGRRYDRFRNRIIFPIHDRRGRIIAFGGRVLDKGEPKYLNSPETPLFEKGRELYGLFLAQKAIRDAGFAVVVEGYMDVVALAQFAIENAVATLGTATTPQHIHTLLRQTDRIVFCFDGDAAGRRAAWRALENALESLRDDATLAFLFLPAEHDPDSFVRAEGTEAFRKAALAATPLGSFLIQELSGRHPLDSAEGRAAFVHEAAPLVTRIAAPLLKLQVVKAVAESAGMTQGEVEYAFEQLAASAPRRRGASAPTPPRAPAASIASTEADAPFFDDAPPPARSAPPRGQAPRPRAGGRRKPPSTAGTLLRLVMQHPTWAARMPVGLVPDDSPEGLALIAIIDLCSLGEPIPSGGLGALIERFRETPHAETLSRVAAELVEAEFDEAVVETLFEDALRKLQIDGVGKEITALLQRDREQGLDAAGRHRLGELLLEKRNLASSGKVSDL
>NC_011662.2|WP_004302431.1|1317170_1319171_-|RNA-polymerase-sigma-factor-RpoD
MAREKAKDPRKDAPAKGRPAKAKDKAAPVVESPAATPLDAEVRRTRLKTLITLGKERGYLTYAEISDHLPDDVADAEQIEGIIATFNNMGIQVYDEAPAAEDLLMSDSVATNVDEDVAEEEAEQALSSVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVQAISACPTTIAEMLGIVDRIAADDAKIDELVDGLIDPNAGSAEEAAAEEESADEDTEAEEDEGAEDEDEGDDEEDSAESAERANAASLLQLKNDALARFDVIRGLYEKKMQALEKRGSQDLSYLALQQQISDELLNIRFTAKAIEKLCDSVRHMVEQVRSHERQILQLCVDRAGMPRQHFIKVFPGQEVNLDWLKDEIAAGKNYADGLMRIHPAVLEEQQKLIDLQDRIGIPLKELKDINRQMSTGEAKMRRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGQEPDPATLAEKMEMPEEKIRKIMKISKEPISMETPIGDDDDSHLGDFIEDTATLAPAEAAMYSGLRDATCEVLDSLTQREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEKLRSFLDSDA
>NC_011662.2|WP_004302433.1|1315931_1316753_-|fibro-slime-domain-containing-protein
MIMQVKPLCAALTLAVLASTASAATTTLSGTIRDFCAPSITGTTGATTCTQLADFEGAIPGVVPNMTGTTLSGGLPVAGANIVAGASTAANFAKWYVDSPGYNLSQAFSLTLGETTPGSGVYSYASSSFFPIDGQLFGNQGRGHNYHFTLHLEGQLSFADPTAAADNSFSFTGDDDLWVFVNGIRFIDLGGVHGAASASFTEETLKTAGLAPGTAYDLDIFFAERHTSESNFNITTSFAITPPSNNVPEPGGLALLALGLAGLGAIRRRSRVG
>NC_011662.2|WP_012584907.1|1314156_1315845_+|AMP-binding-protein
MLATDTFLNARDFLSAHRSDPEGAWRGFAWPQLEHFNWALDYFDQVADAADRLALWVVHEGGGEERLSFADLTQRSNRTANFLRRIGVRRGARILLMLGNELALWECMLAAMKLGAAVIPATPQLTGADLADRLARAQVEHVIVDASHAAKFDDLAAPFSRIVVGARRPGCACYEDAGAESAVFVADRPTARDEEFLLYFTSGTTAKPKLVLGTQQSYPVGHLSTMYWLGLGRGDLHWNLSSPGWAKHAWSSFFAPWNAEAAVFAFDAARFSARTVLDVLHAYPVVSFCAPPTVWRMLVQEVLGERPPVLRELASAGEPLNPEVVDEVREAWGIVIREGYGQTETTAVLGTPPGVRPRPGAIGKSLPGYRVVLLDEQGVEAMEGEICIGLEPRPLGLMSGYAGAPERNAIAMRDGYYHTGDIAHRDDEGYIHYVGRSDDVFKVSDYRISPFELESVLVEHPAVAEAAVVPCPDVVRLAVPKAFVGLAAGHVPSRELAGELLAFARARLAPYQRIRRIEFAELPKTISGKIRRVQLRTAEMGRDPGEARPPLEFREEDFDPAP
>NC_011662.2|WP_004302438.1|1312990_1313569_+|peroxidase-related-enzyme
MTETISRFKVPELADLAEDVRERILAVQEKAGFVPNVFLMLAHRPAEFRAFFDYHDALMEKDVGLSKAEREMIVVATSAAGQCLYCVIAHGAILRIRAKNPRLADQLATNHRKAEISPRQRAMLDFAIKLSTRGAEVDEADLAVLRAHGFDDEAIWDIGAITAFFSMSNRLVHLTGTPPNEPFYLMGRVPKA
>NC_011662.2|WP_004302439.1|1311970_1312954_+|oxidoreductase
MFKAVLIEKDDAGYRAAVKELDEAALPEGDVGVRVEYSSLNYKDGLAITGRGAVVRKFPMVAGIDLVGTVESSAHPGVAVGDKVILNGWGTSEVHWGGLAQRARVRGEWLVPLPAAFTPRQAMAIGTAGYTAMLCVMALERHGVVPQRGEVLVTGASGGVGSVAIALLSRLGFTVVASTGRPQEADYLRELGATTIIDRSELGLPGRALGKERWAGVVDTVGSHTLANACATTLYRGTVAACGLAQGLDFPASVAPFILRGVTLVGIDCVMAPREERIEAWSRLARDLDVHKLERMTREIGLGEVVDTAAALLDGQERGRIVVDVDR
>NC_011662.2|WP_004302441.1|1310585_1311830_-|nitronate-monooxygenase
MKRVDDFRLKLGSQELVPIMVGGMGVDISTSDLALEAARLGGVGHISDAMLPTVSDRRYNTKYVKNKLQQYKFNVANADKSVVQFDLGLIAEATATHVGRTMERKRGPGMVFINCMEKLTMNAPKETLRVRLRTAMDHGIDGITLAAGLHLGSLSLIEDHPRFRDVQLGIIVSSLRALQLFLKKSARTGRLPDYVVVEGPLAGGHLGFGMDWAQYDLATIVAEIRDWMREQQLDIPLIPAGGIFTGTDAVNFLEAGAAAVQVATRFTVTKECGLPDEVKQDYFKAEEDEIEVNQISPTGYPMRMLKSSPAIGSGIRPNCEAYGYLLDSSGNCQYIEAYNREVAAHPEAKKVKVFDKTCLCTHMRNFDCWTCGHYTYRLKDTTVREDGGDYRILSAEHVFKDYQFSTEGRIALPD
>NC_011662.2|WP_004302443.1|1309416_1310484_-|response-regulator
MQVAVVDDTQLNLFLIGKLVDRMQDARAHNFERPTAALEWCLANAPDLIIVDYMMPEMDGLEFIRRIRACRDRDDLPILMVTASHERDVRYAALDCGASDFLTKPVDAREFEARVRNMLKLRQAHLANEHRAETLAAEVRRATADILDRERETITRLSRAAEFRDPETGAHIQRMSHYSALIARRLGLGDTFAETLLMAAPMHDVGKLGIPDTILLKPGRLTADEFAVMKRHPQIGHDILKGSSSSILRLGATIALTHHEKFDGSGYPQGLSGQSIPMEGRIVAVADVFDALTSARPYKPAWPMSRAIALLREGRGTHFDPTCVDALFHTWEDVLAVQSRYQDEHAPEPPVSPPC
>NC_011662.2|WP_004323472.1|1322884_1323493_-|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MSTLLLIVAAYLLGSIPFAIVTSRLFGLEDPRKYGSGNPGATNVLRSGNKAAAVLTLLGDALKGWLAVWAALRLGFEPDIAALAGLAAFLGHVFSLFLRFNGGKGVATALGVLAGVDARIAIFCAVIWLMVAYTTRYSSAAALSAALAAPLAGLLFLGAKPAVGLLAVMTAVLFWRHKENIARLRAGTEGKIGGKKKDGPAA
>NC_011662.2|WP_004323471.1|1323660_1324035_+|dihydroneopterin-aldolase
MDFIFIEELRVKAWVGIYAREKTGPQTVELNLTFGVPDAAAEHDDIADTIDYAVVTERIRRELGERHFNLIESLGEFVVKLLFEEFGAPWVKLKVGKIGVMKDVRRVGVYIQRSKAGVVVPPAA
>NC_011662.2|WP_004323469.1|1324054_1324543_-|Cys-tRNA(Pro)-deacylase
MSRNEAHAPETPATRFLRQHGVAFSSHLYEYEEHGGTTVSSRELNVPEHAVVKTLIMEDENAQPMVVLMHGDHKVSTKELARQIPCKHVETCKPETANRHSGYLVGGTSPFGTRKKMPVYMERTVLDLPLVYINGGRRGFLVGIHPHDLLRVLQPRLVQVAN
>NC_011662.2|WP_004323467.1|1324658_1325588_-|site-specific-tyrosine-recombinase-XerD
MSGRAPAREAGLQPAHRAELDRFADALWLEHGLARNTLAGYRSDLARFAAWLETRAQRLPAAAGADLAAYLAEFSRAAKPASQRRLIAAWRRYYRLLLANREIAEDPTLAIDTPRAAERFPKTLSEPQVEALLAAPALDTPQGLRDRCMLEVLYAAGLRVSELVGLKIFAVGVNEGVVRVMGKGSKERLVPLGEIAADWLQRYLAEARPVLLAGRSCDEIFVTRLGAAMSRQMFWRLIKHYALAAGIAPERISPHTLRHAFATHLLNHGADLRVVQLLLGHADISTTQIYTHVARERLKQLHARHHPRA
>NC_011662.2|WP_004323466.1|1325584_1326073_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MTAGRAPASVFDAVIALPFGPFGIRAHDGQVQELVFLPPGTPLHEPRNASAGAAAHALRAWIDDPDQPFPVPLAPCGTPFRRRVWTAIAAIPRGRTATYGELAASLDSAPRAVGQACGANPFPLIVPCHRVTSAAGLGGFANAREGWLLDVKRWLLAFEGAL
>NC_011662.2|WP_004323464.1|1326087_1326672_-|chalcone-isomerase-family-protein
MSIRILRSLIVAALLSASLAQAAVKVGNVEFAPQQTVQQRTLELNGAGLRTRLGFKVYAMGLYLRAPLAEAGAILADKGEKRIRIVPIRDLEAKQFGDALQTGLEKNHDDAALAALKPATDALLGALAAVGEVKAGTEIVLDRLGNGATRLLVDTKQQGEDIADAAFYPALLRIWLGERPADSELREALLKNPQ
>NC_011662.2|WP_012584911.1|1326707_1327985_-|glutamate-5-semialdehyde-dehydrogenase
MDIQHYMQTLGRQARAASRVLAAASTAAKNAALIAMAAEIRARRAELLTANAQDLDEARAAGLEPALIDRLTLNEKGIESMAAGLEQVAALPDPVGEMSDIKRRPSGIALGKMRVPLGVIGIIYEARPNVTADAAALCLKSGNAAILRGGKEAIHANRAIAACVRAGLLAAGLPEHAVQVVEITDREAVGALITMPEFVDVIVPRGGKGLIERISRDARVPVIKHLDGNCHVYIDDEADPAKVVPIVENSKTQRYGTCNTAESLLVARDVADIYLPEIARTLAAKGVEMRCCAESLALLREAGIAGAKLVEATAADWREEYLAPIIAVKIVAGLDEAIEHINTCSSGHTEAIVTENYSHAMRFLREVDSSSVMVNASTRFADGFEYGLGAEIGISTDKIHARGPVGLEGLTSQKWIVFGNGEVRR
>NC_011662.2|WP_004323460.1|1328094_1329105_-|DNA-polymerase-III-subunit-delta
MNLRPDQLAAQLERPLAPLWLLHGNEPLLVLEAADAIRAAARRQGYEERETLVVGHGFKWDALALAAGNLSLFGGAKLIDLRIPTGKPGRDGGDALQRYIAHLPSQTLTLVTLPEVDWATRKTAWFKGLADAATTLELHAPERERLPEWVARRLAAQKQSAPPEALAFIADHVEGNLLAAHQEILKLGLLHGEGALTLEQVQDAVLDVARYDIDKLRLAVVEGDPARCARLLEGLEGEGAAPPLVLWALAHETRSLATLSAGRDAGQPLAALFKAERIFDPRRQQAMTRALGRLGQGHLRAALMHAARIDRMIKGLASGDLWDEFLQLALRLARRG
>NC_011662.2|WP_012584912.1|1329124_1329652_-|hypothetical-protein
MTAPGPVMATARRRLLGGALGAAALLLSGCGFRLRGPQALDFATVHISVPEQSEFGAQLRRLVATTGTTRVEEDAAKAEALLQILSNDRGREILSLTGAGKVREYQLVQSLRFQLLDRAGKALIPPTSLTARREYTFDDSQVLGKEQEEALLYRDMQNDLVQQLMRRLAAARRSG
>NC_011662.2|WP_012584913.1|1329663_1332291_-|leucine--tRNA-ligase
MQEKYQPAALETAAQQHWDSTDAFRVTEDASRPKYYCLSMFPYPSGKLHMGHVRNYTIGDVLARFHRMKGYNVLQPMGWDAFGMPAENAAIQNNVPPAKWTYANIDYMKAQLKRLGFAIDWSRELATCTPEYYRWEQWLFTRLYEKGLIYKRLGTVNWDPVDETVLANEQVIDGRGWRSGALVEKREIPMYYMKITAYADELLSALDDLPDWPEQVKLMQKNWIGRSEGVEISFPFDVSSIGHEGALKVFTTRADTLMGATYVAVAAEHPLATQAAASNPALAEFIEECKRGGVAEADIATMEKKGMPTGLKVRHPLSDEPLEVWVANYVLMGYGEGAVMAVPAHDERDFAFATKYELPIRMVVGADAYADTVAPWQDAYAEYGRLVNSGKYDGLDFQGAVDAISADLEARGLGAKRVQFRLRDWGISRQRYWGCPIPMIHCADCGDVPVPDEQLPVVLPENVEITGRGSPLAKMASFYECSCPKCGKPAKRETDTMDTFVESSWYFLRYACADSSTAMVDARVDYWAPVDQYIGGIEHAILHLLYSRFFTRAMRDCGLVKVSEPFSALLTQGMVVAETYYRELDGGKKQWINPADVVVERDERGRIVAAKLESDGLPVVIGGTEKMSKSKNNGVDPQSLVDQYGADTARLFMMFAAPPDQQLEWSDSGVEGASRFLRRVWNYGHTFATATRAALPATRALAAGTLPVAAADVRREVHTHLKQASYDFGKHQFNTVVSAAMKILNALEKAHKDLAGTEPAAHAEVAEEGFSILLRLLSPITPHICHALWQDCGFGTDILAAQWPEVSEDALKRDEIELMLQVNGKLRGSLEVAADAAKADIEALALASEAAQKFMEGKPAKKVVVVPGRLVNIVV

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Crispr_ID: NC_011662_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_6

1490294-1490391

Orphan

Consensus_repeat	Method
GCGTTTGATCGCGACTGGCGTCGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011662_6

>merge|NC_011662|6|1490294-1490391|CRISPRCasFinder
GCGTTTGATCGCGACTGGCGTCGCTCTCACGGAACCGACCTCGCCTGCCTCGCCGCGCGCTAGGCGCGACGCGCGTTTGATCGCGACTTGCGTCGCTC

>NC_011662|6|6|1490294-1490391|CRISPRCasFinder
GCGTTTGATCGCGACTGGCGTCGCTC	TCACGGAACCGACCTCGCCTGCCTCGCCGCGCGCTAGGCGCGACGC
GCGTTTGATCGCGACTTGCGTCGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_004304763.1\|1489233_1490166_-\|allantoinase-PuuE	unknown	unknown	gnl\|CDD\|211797
NC_011662.2\|WP_004304767.1\|1487293_1487803_-\|ureidoglycolate-lyase	unknown	unknown	gnl\|CDD\|179606
NC_011662.2\|WP_086014423.1\|1480026_1480929_-\|xanthine-dehydrogenase-accessory-protein-XdhC	unknown	unknown	gnl\|CDD\|274366
NC_011662.2\|WP_012584978.1\|1496261_1498052_-\|bacteriohemerythrin	unknown	unknown	gnl\|CDD\|274362
NC_011662.2\|WP_012584976.1\|1494863_1495574_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|183298
NC_011662.2\|WP_012584979.1\|1499462_1502552_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NC_011662.2\|WP_012584977.1\|1495618_1496239_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223698
NC_011662.2\|WP_004304744.1\|1498191_1499424_-\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NC_011662.2\|WP_004304754.1\|1492868_1493807_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176152
NC_011662.2\|WP_012584975.1\|1485488_1486889_-\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NC_011662.2\|WP_004304756.1\|1492339_1492690_-\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|225226
NC_011662.2\|WP_004304758.1\|1491092_1492286_-\|urate-hydroxylase-PuuD	unknown	unknown	gnl\|CDD\|368779
NC_011662.2\|WP_004309111.1\|1478722_1480030_-\|guanine-deaminase	unknown	unknown	gnl\|CDD\|236419
NC_011662.2\|WP_004304752.1\|1494113_1494587_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NC_011662.2\|WP_004309114.1\|1475940_1478703_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NC_011662.2\|WP_012584974.1\|1483930_1485436_-\|xanthine-dehydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|274365
NC_011662.2\|WP_004304765.1\|1488082_1489132_-\|allantoicase	unknown	unknown	gnl\|CDD\|237319
NC_011662.2\|WP_004304761.1\|1490490_1491063_-\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	unknown	unknown	gnl\|CDD\|132208
NC_011662.2\|WP_004327391.1\|1481475_1483920_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|274367
NC_011662.2\|WP_004309117.1\|1474722_1475628_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182228

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_004304763.1\|1489233_1490166_-\|allantoinase-PuuE	gnl\|CDD\|211797	TIGR03212, uraD_N-term-dom, putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.	0
NC_011662.2\|WP_004304767.1\|1487293_1487803_-\|ureidoglycolate-lyase	gnl\|CDD\|179606	PRK03606, PRK03606, ureidoglycolate lyase.	1.54332e-79
NC_011662.2\|WP_086014423.1\|1480026_1480929_-\|xanthine-dehydrogenase-accessory-protein-XdhC	gnl\|CDD\|274366	TIGR02964, conserved_hypothetical_protein, xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. [Protein fate, Protein folding and stabilization, Purines, pyrimidines, nucleosides, and nucleotides, Other].	8.55974e-65
NC_011662.2\|WP_012584978.1\|1496261_1498052_-\|bacteriohemerythrin	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.86892e-83
NC_011662.2\|WP_012584976.1\|1494863_1495574_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	4.46425e-64
NC_011662.2\|WP_012584979.1\|1499462_1502552_-\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	7.33254e-104
NC_011662.2\|WP_012584977.1\|1495618_1496239_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|223698	COG0625, Gst, Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	1.41256e-40
NC_011662.2\|WP_004304744.1\|1498191_1499424_-\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	4.36204e-32
NC_011662.2\|WP_004304754.1\|1492868_1493807_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176152	cd08463, PBP2_DntR_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.21223e-95
NC_011662.2\|WP_012584975.1\|1485488_1486889_-\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	9.56337e-177
NC_011662.2\|WP_004304756.1\|1492339_1492690_-\|hydroxyisourate-hydrolase	gnl\|CDD\|225226	COG2351, COG2351, Transthyretin-like protein [General function prediction only].	2.62639e-64
NC_011662.2\|WP_004304758.1\|1491092_1492286_-\|urate-hydroxylase-PuuD	gnl\|CDD\|368779	pfam06181, Urate_ox_N, Urate oxidase N-terminal. Cytochrome c urate oxidase (Uox) PuuD is involved in purine degradation. In contrast with soluble Uox it is a membrane protein with an 8-helix transmembrane N-terminal domain and a C-terminal cytochrome c.	9.25091e-173
NC_011662.2\|WP_004309111.1\|1478722_1480030_-\|guanine-deaminase	gnl\|CDD\|236419	PRK09228, PRK09228, guanine deaminase; Provisional.	0
NC_011662.2\|WP_004304752.1\|1494113_1494587_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	3.25253e-22
NC_011662.2\|WP_004309114.1\|1475940_1478703_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	6.45943e-109
NC_011662.2\|WP_012584974.1\|1483930_1485436_-\|xanthine-dehydrogenase-small-subunit	gnl\|CDD\|274365	TIGR02963, Includes:_Xanthine_dehydrogenase, xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NC_011662.2\|WP_004304765.1\|1488082_1489132_-\|allantoicase	gnl\|CDD\|237319	PRK13257, PRK13257, allantoicase; Provisional.	0
NC_011662.2\|WP_004304761.1\|1490490_1491063_-\|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase	gnl\|CDD\|132208	TIGR03164, UHCUDC, OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.	4.16534e-70
NC_011662.2\|WP_004327391.1\|1481475_1483920_-\|xanthine-dehydrogenase-molybdopterin-binding-subunit	gnl\|CDD\|274367	TIGR02965, xanthine_dehydrogenase, xanthine dehydrogenase, molybdopterin binding subunit. Members of the protein family are the molybdopterin-containing large subunit (or, in, eukaryotes, the molybdopterin-binding domain) of xanthine dehydrogenase, and enzyme that reduces the purine pool by catabolizing xanthine to urate. This model is based primarily on bacterial sequences; it does not manage to include all eukaryotic xanthine dehydrogenases and thereby discriminate them from the closely related enzyme aldehyde dehydrogenase. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NC_011662.2\|WP_004309117.1\|1474722_1475628_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182228	PRK10082, PRK10082, hypochlorite stress DNA-binding transcriptional regulator HypT.	2.91898e-38

>NC_011662.2|WP_004304763.1|1489233_1490166_-|allantoinase-PuuE
MTSNPTYPRDLVGYGRNPPHADWPGRARIAVQFVLNYEEGGEHCVLHGDAGSEQFLSELFNAASYPDRHLSMEGIYEYGSRVGVWRFLREFERRGLPLTIFGVSMALERHPELTAAFKELGHEIACHGWRWIHYQNVPEEIEREHMKIGMEIIERLTGTRALGWYTGRDSPNTRRLVADHGGFLYDSDYYGDDLPLWTEVRRTDGETVPHLVVPYTLDTNDMRFALPQGFSHGDEFFEYLRDAFDVMYAEGEERPAMMSIGMHCRLLGRPGRFRALQRFLDHIEKHDRVWVCRRVDVARHWIERHPYQAK
>NC_011662.2|WP_004304765.1|1488082_1489132_-|allantoicase
MASHTPGAPVFAPAAELPDWALRSVDLANPRLGAKAIAASDDFFAEVGRMLNPEPAQFVPGKFDTNGKWMDGWESRRKRVAGHDWALVKLGVKGVIRGFDVDTSHFTGNYPPAVSIEACVSETDDVAALQAAEWTEILPASPMGPNSHHLLECASTAAWTHLRVNMYPDGGIARLRVYGRPVGTLAAKAAGSELVDLVAMENGGRALSWNDASFGSSAAALLLPGRGMNMGDGWETRRRREPGNDWCVLELGAPGTVERIEVDTAFFKGNYPDRCSVQAAYVSGGTDRSITTQSMFWQTLLPEQKLEMDAIHTFTEQVAKLGPITHVRFNIFPDGGVSRLRLWGKVEAK
>NC_011662.2|WP_004304767.1|1487293_1487803_-|ureidoglycolate-lyase
MRTAAPLPLAVHPLTREAFAPYGEVVEVSDAVRHFTINAGNTERYHDLANIEPGPDGRVIVSIFRGQPRSLPFTVQMMERHPLASQAFVPMSGKPYLVVVAPAGAPPAAEDLKVFLARADQGVNYATGVWHHPLLALEGVCDFLVIDRSGPGHNCDEVQLDRHGVIEAL
>NC_011662.2|WP_012584975.1|1485488_1486889_-|purine-permease
MSDQTRTSRPLELDPVDQCPPGGRLFTLALQHVLVMYAGAIAVPLIVGGALKLPKDQIAFLINAHLLCCGLVTIIQALGVGRFGIRLPIMMGVTFAAVGPMVAMAGNPALGINAILGAGIAAGLFGILFAPLVARALPLFPPVVTGSIIAVIGLSLMPVAINWSAGGQPRIRDAATGLMVDNPAYGAPEYLAIAAIVLVVVLAITRYGRGFLSNVAVLVGMGVGFAIAIALGKVGFDGLADAPWVSIVTPLHFGAPIFDPISIATMCLVMVVVMVESLGMFLALGELTGRRLSRDDLTRGLRTDGLGTLIGGFLNTFPHTSFSQNVGLVGVTGVKSRWVCVAGGAILMAFGLFPKMALIIASVPQYVLGGAGLVMFGMVAATGIKILLAADLRNNRFNLYIVALSVGAGMIPMVAPKFFQQMPHALEPLLHSGILLAAITAVTLNLFLNGGRRSASAEAIEPALAH
>NC_011662.2|WP_012584974.1|1483930_1485436_-|xanthine-dehydrogenase-small-subunit
MDSQTIRILLDGEAVSITDLAPTTSLLAWLRGARGLVGTKEGCNEGDCGACTVVVGELADDPADAPRLYAVNACIRFLATLDGKAVFTVEHLRSLAGGALHPVQQAMVDCHGSQCGFCTPGFTMSLWALYEDRHAQGEAAADPARIRSALAGNLCRCTGYRPIVEAGERMFDAPSRLLDRDRLRTALLALRRDDTLDFGHEGGRFVAPRSVDELLALRSRHPAATLLAGGTDIGLWVNKGLRRLDTLIHTGEVAALRAIVPHAGGLRIGAAASLTAAFAALVRLHPELAELRERFASPPVRNAGTLGGNVANGSPIGDSMPALIALGARVVLASVRGRRSLALEDFYLDYMKKDLAADEIVEAIELPPPAPARRLRSWKLAKRFDSDISAVCAGFALELRAGRIHAPRIAFGGMAATPRRATATEAALAGRPWDEAALAAAQCALEHDFAPLDDLRASAGYRRRAAAGLLARFFLETRPDAPLAAAQTRAFAAEDLAGGGR
>NC_011662.2|WP_004327391.1|1481475_1483920_-|xanthine-dehydrogenase-molybdopterin-binding-subunit
MNEPIEPTSSPPASAPPAGQPHPHESAHLHVAGEATYVDDLPEPAGTAHAALGLSTQAHARIVAMDFGAVLAAPGVLGVLVAADIPGRNDCGPIVHDDPILAAGEVHYVGQPIFAVIADERDAARRAARLARIDYAPLPARLDPLEAACAGELVLPPMRLMRGDVDAALAAAPHRVEGRWQVGGQEHFYLEGQVALAQPREDGCMQVWCSTQHPSEMQQVVAHCLGIAAHRVVVEMRRMGGGFGGKESQSALFACVAALAAARFRRAIKLRPDRDDDIAITGKRHDFHYDYTVGHDEEGRLLALRVDMVARAGCSADLSGPVATRALCHVDNAYHLPAADLRARLARTHTQSNTAFRGFGGPQGAILAEWVIDGIARTLGRDPLDVRRANFYGGPGRDTTPYGQVVADNVLHALVDELEASSDYRARRAEIAAFNAAAPVLRRGLALTPVKFGISFNLTHLNQAGALVHVYADGSVLVNHGGTEMGQGLHTKVCQVVAAELGIALERVRATATDTSKVANTSATAASTGADLNGQAAAAAARTIRMRLAEFALRRFAEGGEGGQGEDRGDARPGRRPADPAAVRFADGQVYVGAHTIPFAELVGAAYRARVQLWSDGFYATPGLHWDAATLTGHPFHYFAYGAAVSEVVVDTLTGEWRLLRADLLHDAGSSINPAIDRGQVEGAFIQGMGWLTMEELWWNAEGRLMTHAPSTYKIPAAHDCPADLRVRLFHNPNRADTLLRSKAVGEPPLLLGFSVFFALRDAIAAAGDGHSNPPLRAPATPEAILDALDAVRRRPTPDARRPTPDASHLTPDA
>NC_011662.2|WP_086014423.1|1480026_1480929_-|xanthine-dehydrogenase-accessory-protein-XdhC
MLGCRSDASRDRADEGATAPGSAAPPAPSAGSRLASLLQEDLAAPRRSDASRDRADEGATAPGSTATPAPGAGSRLASLLQEDLAAPRRSDASRDRADGSATAPGSAAALGTAILLDASPPPALQVVMFGAGHVGRALAELFGRLPLRVRWVDARAQEFPPALAPNVEPHCTDTPTAEVRAAPAGAVFLVLTHSHALDFELVEAILARDDFRFCGLIGSQTKRARFAHRLHARGIEEARIARLRCPVGLPGLPGKEAEVIALAIAAEVMRLRPQAHPPSTPRRPAAGAPATQPTESGHET
>NC_011662.2|WP_004309111.1|1478722_1480030_-|guanine-deaminase
MKPSAPPSPRLSAVRGEIVHFLADPAADPRALEHFADGVLIVRDGHVAECGPAAALLPKLPAGTPLADHRGKLILPGFVDTHVHYPQTDIIASHGEQLLEWLEKYTFPAERRFADRAHAAEVAGFFCDELLRNGTTTAAAFATVHAASVDALFEAARARRMRMITGKVLMDRNCPDFLRDTAETGYAESKALIERWHNRDRLLYAITPRFAPTSTPAQMTLAGRLFNEHPGVFLQSHLAENRAEVAWVAQLYPQARSYLDVYARAGQLGTRAVFAHCIWLDDADRRHMAETGAAISFCPTSNLFLGSGLFDLRRARALGVRVGLGTDVGGGTSFSMLQTMNEAYKVLQLAGQSLSAASAFHLATLGGAHSLYLDDRIGNLAPGKEADFVVLNPRATPLLERRSAACATLEERLFVLMMLGDDRAVAATHVLGVPV
>NC_011662.2|WP_004309114.1|1475940_1478703_+|EAL-domain-containing-protein
MIRTSLNFRLWLTIAIAVLPVLLFVFFDFHERREQAVAETRAEIALRLADANREAQAAHRAVALVLRIMARSNDLQALDSAQCSGIAGRLLKSLDGFANIGAALPDGEIFCSGRPMSAPVTVIDRAWFRTSLDSDEISPGEFVIGRVSGTPSMAFGYPLRAADGTLRAVIFATITVAWFDRLIEGFRLPEGWEASVISNSGLVLAHQPERAPEGWRAHKVPATTLARMAAVVRDEGGIAELAGIDGVQRLYGIGVPDFAPGSGFFAIGAPLERSLEAAGQRLLMYLALVAAIALASALIARLYIYRLIEVWATRVRGAIAEIAAGRRDARIGQATGVAELDALSEGIDQMALEIGKREGELQRLSMVIEQSPESIVITDTAGCILYVNEAFQRITGYARDEVLGRNPRILNGGLTPRATYEQMWATLLAGEVWRGEFHNVRKDGSAYLELATIAPIKDAGGTVTHYVAVKEDITQRKQSEALLHRLAYFDALTGLPNRALLHDRIAQAIRSGVRRESFGMLMLVDIDRFRQLNDTLGHAAGDRLLCEVAARLRASVREEDTVARHGDDDFAVLVERIGETEADALSHAEHVARKLQRALQQPYVLGGTEGDRHFATLSFGISLFHDGVSSLESLLKQAEVALYRAKQDGRDIVRFFNPEMQAVVDAHARLEARMHEALEANAFRLFFQPQVNRRGVVIGAEALLRWPLDGGAMVSPAEFIPLAEDTGHIVRLGLWVLRSACAQLARWQMNEGTRHLKIAVNVSARQFHQPDFVASVKDSVRAAAIDPCRLELELTESAILSDVDETIRRMNELRALGIRFALDDFGTGYSSLSYLKRLPFDQLKIDQSFVRDMAEDESSEAIVLAILSLSHALGLEVVAEGVEMPEQRDFLRQHGCDSFQGYLFGKPLPMEAWGDFLEMI
>NC_011662.2|WP_004309117.1|1474722_1475628_-|LysR-family-transcriptional-regulator
MELKWLEDFLSLADSGSFSRSAEQRHVSQPAFSRRIRALEAWLGVALVDRSTFPTRLTEAGEAFKGPAADLIHRLHAARALVRGHQTTAGDALVFAVPHTLAFAFFPTWLGRLKAEFGEVPTRLIAGNVHDVVTMLVEGGCDLLLCYHHPTHPVWLDPARFEGIQLAVERVRPYLPRRLARSAGWQLPGSAEAPIPFLRYGPNTYLRRMVDTILDRAAHPAHLALQYESDMAESLKAMLLAGHGLAFLPASAVAREVERGEVVVAGGPEWSLEMEVRLYRDRANTKPELLRLWQHLAAKPL
>NC_011662.2|WP_004304761.1|1490490_1491063_-|2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline-decarboxylase
MSTPATAPTTAPDRPAAALDAALDELSRLAQDAFVARLEGIFEHSPWIAERAWSAGPFASIDALHAAMCLVVDTADPAEQLGLICAHPELAGKEAEEGTLTTASTGEQRGAGLDQCSKEELQRLRRLNQDYRARFGFPFVVAVKGLTRHQILDRVEARLANVRDAEFRTCLAEIGKIARFRLDAMFGTNS
>NC_011662.2|WP_004304758.1|1491092_1492286_-|urate-hydroxylase-PuuD
MEAYLLDWANLLVRWLHLIAGIAWIGASFYFVMLDNSLKPPKNPNDAKRGVFGELWAVHGGGFYHSQKYLTGPKGEPLTQDLHWSKWEAYTTWLSGMGMMAVIYWIGASSYLIDSSVMALSPAAAVGISITFLVAGWVFYDLLCRNMIGKDGVLAAIVFVFVMVANYVLHQVFSARGAYIHVGAMLGTMMAANVFFHIIPGQKKMVEQIRRGEQVDPMPGIVGKQRSVHNTYFTLPVLFIMISNHYPMTYANAKGWLVLGVLMVAGVLIRQFFVLRHRGQVKWWLPAAGVALIALLMVLMAPKQVDAGGEKVSFATVKAIMAQRCIACHADKPTFEGFAQAPKGVMLQTPEQIAAHAVMSAQTVASGYMPLGNLTAITEEEREKIAIWFAQGARTAD
>NC_011662.2|WP_004304756.1|1492339_1492690_-|hydroxyisourate-hydrolase
MGRLTTHVLDTAHGKPGTGITVTVYRLDGERREVARSVTNHDGRCDKPLLEGAALEAGKYEIVFAAGDYFRALGLNLPEPPFVDEVALRFGIADVAEHYHVPLLVSPWSYSTYRGS
>NC_011662.2|WP_004304754.1|1492868_1493807_+|LysR-family-transcriptional-regulator
MSLRRSDDPLDTYLLRVFVLLISERSVSRTALRLNQSQPAVSAALKRLREILGDPLLVREKGGMVPTERALALMSHAKGALAEIDRMTDAPESFEPHSTRHEFRVGSPDYLAPVFVASVAERFRREAPQARLSLHALGPSFDFERSLAEGDLDVVIGNWPEPPHRMHLSMLLEDEIVCLVAASHPCAKKGMSVDDYLRAAHVVPMPYSISQRGVIDSVLASMRINRDERVAVQSFTAAPYLLQGTDLVFTTTRHFAQFYANLLPLAIIPSPIAFPPMRFYQLWHERNHHSTGHRWLRRLLSDCGRRIAPPHA
>NC_011662.2|WP_004304752.1|1494113_1494587_-|universal-stress-protein
MSYEIRSILYASDLTPRSPAVFRHAVGLAMKFNAKLHAVTVTLPSSSLPYEEFLSEEKMDEIKLAGHKKAEALLRHRIDVFAEANPELDVKSVLASVRALEGDPSRRILDVAKHVLADVIVMGSRGHSTIGELLLGSVAHKVTMKADIPVMLVPIDR
>NC_011662.2|WP_012584976.1|1494863_1495574_+|glutathione-S-transferase-N-terminal-domain-containing-protein
MIDLYTAATPNGHKVSIALEELGLAYSLRVLDLSANEQKEPWFLAINPNGRIPAIVDHDEGDFAVFESGAILIYLAEKTGRLMPQDARGRSRVLQWLMFQMGGIGPMMGQANVFFRYFPEKIQPAIDRYQGEVKRLFRVLDGHLAKNEYLAGDYSIADIANWAWVRTHNWSGVAIDDLPDLARWRDQIRARPAVQRGIEMPPSSFDRDGDGEEQAKAFSAKVRNMVETGQSRSGGV
>NC_011662.2|WP_012584977.1|1495618_1496239_+|glutathione-S-transferase-family-protein
MKLYVSPRAPNPRRVQMFIAEKGIRGIEEVAVDLVKGEHRSSDHRARSPLAKVPVLELDDGRYLGETRAICSYLEGLYPEPNLMGDSFEERAFVEMTDRRVELYLFGGIMNCVRHTHPGLAPLEQPQFEDFGRSQGEKVREVARWLDEELGRQPFVAGERFTIADITAFCAIEFARGLMRFRPGAEGMANLQDWRDRIAERPSARV
>NC_011662.2|WP_012584978.1|1496261_1498052_-|bacteriohemerythrin
MITEMEIFPWDSNFATGIAVIDAQHQQLVALLNRLVTHLAFQSDAPTLNSVFDQLRDYVEVHFTTEEALWQAHLGEYAGVAGHHESHVRFIDEVLRLKAEESTKPFETVIENIVNFLTRWLALHILEADRRMALVVHGVQRGLTLEQARTQADETMSGSMRVLVETVLVMYDKLANRTMAMTREINRRRQAEAELQKAHEALKRAKENAESVSEAKSSFLASMSHEIRTPLAAILGMSHLMHQEELPASQRERLDVIENAGRHLLSIINGILDLSKIEAGKFTLDEAALDLRGVVEEAMAMLAHQAEAKGLSLRAEFDLPPGTFLGDATRLRQALVNYLINALKFTERGGITVRCSASAVDTDAVDVRFVVEDTGPGIAAAELRRLFKPFTQTEATSTGEHGGTGLGLAITARLAELMGGQAGAESEPGRGSRFWFTTRLRKVKADEVVAPTGSPLEIRSALAERHGGACVLLADDDKVNREIARVLLSRGGLAPECAADGEEAAALAERCKPALILMDMQMPVVDGIAATRRIRTQDWGREVPIIALTANAFAEDRVRCLEAGMDDFLTKPIMPAVLYSKLLYWLDRSRRERARS
>NC_011662.2|WP_004304744.1|1498191_1499424_-|response-regulator
MNLETLKVLVVTDVAADAAQIARLLADHFEHIETSTIESRFIADFERVQPDVVVLAFTSLERAERYSLGLYRHSEVVHSLPHRSIVLCDKDNVHRAFELCRKEYFDDYVLYWPMVFDTPRLAMSVLIAGRSLQAQRDTPNAREVAAHARSISQLETVLDDRIEVGRQHADALERALQAAEIEASSAQPRPAAPAAPSSDSATIPDAGLDVLPAFTDSFELDVGDVPSGLDRPTQFAVTPQEDVIQEAKLRVDEAKKKVVPLTEWIGGLKADVKPQLDAARQLGELAGRTPPLIVVVDDDAFQCKLLERLLGNSGYRSIIAHSGAEALAVLGRQPPDLILMDVALPDFNGVELTRRLKAIPRFAAIPVVMITGHSERQVLEASLKAGAVDFLVKPFDREILLQKLARHLAP
>NC_011662.2|WP_012584979.1|1499462_1502552_-|PAS-domain-S-box-protein
MRVLRWSPEAERVFGWSAAEVLGRRPNEWSFTHPDDAAEVKRAIGQAITADGPTPPVIGRNFTRDGRLLHCEWHNRANRDPQGRLVSLLSFAKDLTRQLEAERARDLSEARYAHIFNNSHAVMLILDPESGRILDANPAAEEFYGWSRKTLQTMQIGDINTLSPQALLVELKAAHAEERKHFEFRHRRADGSVRDVEVHSGPTEDGNRSMVFSIVHDITERKQAEALSRRWERFFRLSNLGLAMHDVSDNTIIDVNATYASQHGYSIEELRGMRIDELYPEDEREQLHAHLAEADRIGNASFETVHLRKDGSRLPLVIGVTALLDDRGRAVARFAFGLDISARKAAEDELRKLSRAVEESPESIVITNTRAEIEYVNQAFIDKTGYSRAEAIGQNPRLLQSGRTTPATYADLWNTLTHGRSWQGEFFNRRKDGSEYLERVTITPIHDESGHITHYVAVKQDITAQRRMEEELLRYHEHLEGLVESRTAELQHALDAANIASRAKSEFLTTMSHEIRTPMNGVIGLLDVLSHSQLSTEQVEMVGIMRESAETLLRLIDDILDFSRIESGNLELDVGPASIPDLIARVVGILQTVANRKSVRLSTRIDPDVPAVVRTDALRLQQILGNLVGNAVKFSSGLDRPGRVEIRVETAGAGRIRFMVTDNGIGIAPEAIEKIFDPFSQAESSTTRRFGGSGLGLSICTRLVRMMKGRMEVNSLPGRGSRFVVTLPLAATNGSATRSEPARSTALARPSPTPPLATPGAGESGRRILVAEDNDINRRVIARQLALLGLQCDTAEDGFEALERWRQGQYSLLLTDLHMPGMDGYELTARIRSEEAPGRRTPIVAVTANALRGEKERCIDAGMDDFILKPVQVAALQEVLARWLQPDTEQRTPAGTAPAAPAAPPAVFDPQALPGLIGNDAALIAEFLGEYRLSACDTVRSIRKACEDGDWRRAGELAHRLKSSSRSVGAMQLGEICAALEQAGRDDDGDQVQRQGGLLEAALAATLTAMQGTQAAGVPPARGDTPRPG

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Crispr_ID: NC_011662_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_7

1933070-1933254

Orphan

Consensus_repeat	Method
CCCAAACCCGCAGCTTCTTCTGTAGGAGCGACGCAAGTCGCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011662_7

>merge|NC_011662|7|1933070-1933254|CRISPRCasFinder
CCCAAACCCGCAGCTTCTTCTGTAGGAGCGACGCAAGTCGCGATGTCCGAGACCGGTCCCTCGCCGCGCACCCAAACCCGCAGCTTCTTCTGTAGAAGCGACGCAAGTCGCGATCTCAGGGGCCGTTCCATCGCCGCGCACCCCGCACCCGCAGCTTCTTCTGTAGGAGCGACGCAAGTCGCGAT

>NC_011662|7|7|1933070-1933254|CRISPRCasFinder
CCCAAACCCGCAGCTTCTTCTGTAGGAGCGACGCAAGTCGCGAT	GTCCGAGACCGGTCCCTCGCCGCGCACCCAAACCCGCAGCTTCTTCTGTAGAAGCGACGCAAGTCGCGATCTCAGGGGCCGTTCCATCGCCGCGCAC
CCCGCACCCGCAGCTTCTTCTGTAGGAGCGACGCAAGTCGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_041589634.1\|1923171_1925697_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|274782
NC_011662.2\|WP_004303494.1\|1941868_1942897_-\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NC_011662.2\|WP_004303498.1\|1937778_1939098_-\|TRZ/ATZ-family-hydrolase	unknown	unknown	gnl\|CDD\|236366
NC_011662.2\|WP_004303492.1\|1943016_1943898_+\|NAD-kinase	unknown	unknown	gnl\|CDD\|179379
NC_011662.2\|WP_012585161.1\|1939267_1940632_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NC_011662.2\|WP_004303501.1\|1936167_1936872_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NC_011662.2\|WP_004303509.1\|1928119_1929820_+\|L-lactate-permease	unknown	unknown	gnl\|CDD\|224535
NC_011662.2\|WP_004303518.1\|1922224_1922590_-\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_004303488.1\|1945704_1946145_-\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236527
NC_011662.2\|WP_004303516.1\|1922695_1923175_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379171
NC_011662.2\|WP_004303503.1\|1933320_1936026_-\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|223972
NC_011662.2\|WP_004303499.1\|1936979_1937678_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|236764
NC_011662.2\|WP_004303507.1\|1929933_1930767_+\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NC_011662.2\|WP_012585163.1\|1943980_1945636_+\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NC_011662.2\|WP_012585162.1\|1940719_1941817_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|234585
NC_011662.2\|WP_012585160.1\|1932226_1932898_+\|lactate-utilization-protein	unknown	unknown	gnl\|CDD\|376839
NC_011662.2\|WP_012585159.1\|1930763_1932203_+\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|224062
NC_011662.2\|WP_012585157.1\|1918095_1921959_-\|DUF3427-domain-containing-protein	unknown	unknown	gnl\|CDD\|223989
NC_011662.2\|WP_187283031.1\|1927320_1927806_+\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_004303513.1\|1925724_1926921_+\|RtcB-family-protein	unknown	unknown	gnl\|CDD\|376465

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_041589634.1\|1923171_1925697_+\|VWA-domain-containing-protein	gnl\|CDD\|274782	TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).	1.73449e-66
NC_011662.2\|WP_004303494.1\|1941868_1942897_-\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	2.36929e-148
NC_011662.2\|WP_004303498.1\|1937778_1939098_-\|TRZ/ATZ-family-hydrolase	gnl\|CDD\|236366	PRK09045, PRK09045, TRZ/ATZ family hydrolase.	0
NC_011662.2\|WP_004303492.1\|1943016_1943898_+\|NAD-kinase	gnl\|CDD\|179379	PRK02155, ppnK, NAD kinase.	2.67575e-137
NC_011662.2\|WP_004303513.1\|1925724_1926921_+\|RtcB-family-protein	gnl\|CDD\|376465	pfam01139, RtcB, tRNA-splicing ligase RtcB. This family of RNA ligases (EC:6.5.1.3) join 2',3'-cyclic phosphate and 5'-OH ends. They catalyze the splicing of tRNA and may also participate in tRNA repair and recovery from stress-induced RNA damage.	0
NC_011662.2\|WP_004303509.1\|1928119_1929820_+\|L-lactate-permease	gnl\|CDD\|224535	COG1620, LldP, L-lactate permease [Energy production and conversion].	1.19632e-138
NC_011662.2\|WP_004303488.1\|1945704_1946145_-\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|236527	PRK09462, fur, ferric uptake regulator; Provisional.	2.38407e-60
NC_011662.2\|WP_004303516.1\|1922695_1923175_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|379171	pfam13411, MerR_1, MerR HTH family regulatory protein.	6.67086e-15
NC_011662.2\|WP_004303503.1\|1933320_1936026_-\|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	9.98132e-142
NC_011662.2\|WP_004303499.1\|1936979_1937678_-\|OmpA-family-protein	gnl\|CDD\|236764	PRK10808, PRK10808, outer membrane protein A; Reviewed.	2.98385e-47
NC_011662.2\|WP_004303507.1\|1929933_1930767_+\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	1.52248e-54
NC_011662.2\|WP_012585163.1\|1943980_1945636_+\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	0
NC_011662.2\|WP_012585162.1\|1940719_1941817_-\|ferrochelatase	gnl\|CDD\|234585	PRK00035, hemH, ferrochelatase; Reviewed.	2.28429e-171
NC_011662.2\|WP_012585160.1\|1932226_1932898_+\|lactate-utilization-protein	gnl\|CDD\|376839	pfam02589, LUD_dom, LUD domain. This entry represents a domain found in lactate utilization proteins B (LutB) and C (LutC), as well as several uncharacterized proteins. LutB and LutC are encoded by th conserved LutABC operon in bacteria. They are involved in lactate utilization and is implicated in the oxidative conversion of L-lactate into pyruvate.	2.95037e-36
NC_011662.2\|WP_012585159.1\|1930763_1932203_+\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	0
NC_011662.2\|WP_012585157.1\|1918095_1921959_-\|DUF3427-domain-containing-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	7.7073e-83
NC_011662.2\|WP_012585161.1\|1939267_1940632_+\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.64076e-93
NC_011662.2\|WP_004303501.1\|1936167_1936872_-\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	9.09349e-161

>NC_011662.2|WP_012585160.1|1932226_1932898_+|lactate-utilization-protein
MNAKERILGKLRASLAGTTPVADDYDIGLVTDPWRYAADERIARLRRMLEAVHGETLVTTVAEWPQRVLEALAARGIDELLVSPATVHGRRLAEHVRAQDAALRLKGYENPVEAWKDELFFHTPASLTGTLGGIAATGSLVLWPSPQEPRLMSLVPPLHIALLNASEVRDNLFELMHAQRWTDGLPTNALLVSGPSKTADIQQTLAYGAHGPKELLALVIEDA
>NC_011662.2|WP_012585159.1|1930763_1932203_+|iron-sulfur-cluster-binding-protein
MSHVADTPAQPIAFTRNAREALADAQLRRNFRGAMDALMDKRRNQFPDGDELERLRAFGNRVRARALSKLPDLLERLEANLVRNGVQVHWAETVEEANAIVHGIAERHAARKVIKGKSMVSEEMEMNHYLGARGVDCLESDMGEFIVQLRAEKPSHIIMPAIHLNAGQVAKLFHDKLAVEYTEDVDRLIQIGRETLRRNFFEADIGVSGVNFAIAETGTLLLVENEGNGRMSTTVPPVHIAVTGIEKVVENLRDVIPLLSLLTRSATGQPITTYVNMISGPRKADELDGPQEVHLVLLDNGRSQAFADGELRQTLNCIRCGACMNHCPVYTRIGGHAYGTVYPGPIGKIVTPHMLGLETTRDLPTASSMCGACGEVCPVKIPIPSLLRRLREEAVRAPAAEPHHVRGQGAKHSRKETLVWRVWRTLNTSPGLYRAAMYAGTRLRGLMPADIGPWTRYRSAPKPAARSLHELAREHLGEQ
>NC_011662.2|WP_004303507.1|1929933_1930767_+|(Fe-S)-binding-protein
MSPLSSAPANATRVAPPLEAARSYPAKPADVYLFGTCVIDVFFPGAGMDAIRLLEREGIRVHFPQAQSCCGQPAYTSGYTDEAREVARAQLALFAGDWPVVIPSGSCAGMFRHHYFELFKDEPETLQQVASLSARTFELAEFLLEVCKVRFEHTGAPVRLALHTSCSARREMNTHLHGRALLAQLAGVERVEHDHESECCGFGGSFSVRMPEISGAMVQDKTAALKGSGAAEVVSADCGCLLNINGCFEKQGDTLRGEHLASFLLRRTTSASTGGVR
>NC_011662.2|WP_004303509.1|1928119_1929820_+|L-lactate-permease
MQPGTLAFLAFSPILLAAVLLVGLRWPAKRAMPVVYFLTAGIGLYVWEMSLNRVLASTLQGLVITIGVLWIIFGAILLLNTLKYSGGITAIRAGFAKISPDRRIQAIIIGWLFGCFIEGASGFGTPAAIAAPLLVAIGFPALAAVLLGMLVQSTPVSFGAVGTPIIIGVNSGLDSATIGAQLAARGSSWDVFLQVITSNVAIIHAMVGTVIPLIMVMMLTRFFGREKSWKAGFEVLPFAIFAGLAFTVPYAFTGVFLGPEFPSLLGGLVGLALVTTAARFGFLVPKKTWDFADPKEWPSEWMGSVEMKLDQLPRHQPISIFRAWLPYVLVGALLVLSRVFPEIGGAMKSVVIVFADILGEKGIKADFQPLYLPGGILVAVVLITVFLHGMHARSLVKAVGESSRVLLGAGFVLLFTVPMVRILINSGVNAADLPSMPIAMAKWVADSVGNVYPLLAPSVGALGAFIAGSNTVSNMMLSQFQFGVATSLGISTAMVVAVQAIGAAAGNMVAIHNVVAASATVGLLGREGAILRKTFWPTVYYVLMTGTVAMIAIYVLGVSDPLLAAS
>NC_011662.2|WP_187283031.1|1927320_1927806_+|hypothetical-protein
MSTIGYAQLISRLCLVVRPLAKPAQISGSVNRPVDSADRVLLPCGVAIEGTLVGHREFALRHEGVNLEVIDALFERLTPEDLLARLNAAPNGAHIRRACHLWEWLTEPRTAGSCLADGRLRRPVSCPMTTSPPGSPPTTVDSACATMHWGRPISPRWCARQ
>NC_011662.2|WP_004303513.1|1925724_1926921_+|RtcB-family-protein
MPVKTVLNGSTVPVRIWTDDIDEGSKAQLANLASLPFIHHHVAAMPDVHLGIGATIGSVIATHQAIIPAAVGVDIGCGMVAARLSLTANDIDEKRLKKVFDQITRDVPVGRDQHADGRVLVDAVRPFEPGLKALTDRHPQLLKAFGRFSKWANQMGTLGGGNHFIEVCLDEKRRVWVMLHSGSRGIGNAIATYFIELARKDMERHMIHLPDRDLAYFREGSPHFDDYVEAVHWAQDYAMANRQAMLELVLAGLARHLPPFTVTTEAVNCHHNYVAREHHFGADVWVTRKGAIRAGEGELGIVPGSMGARSYIVRGRGNAESFCSSAHGAGRRMSRTAATKHFTEADLARQTEGVICRKDKGVVDEIPGAYKDIDTVMANQSDLTEVLHTLKQVVCVKG
>NC_011662.2|WP_041589634.1|1923171_1925697_+|VWA-domain-containing-protein
MMQQQSARLETRAGEALTLQGVRFTGTLRGTLFEAELEQRFANPFERHVELVYSFPLPWAAVLLGVEVRIGERCLSGAVIEKKQAEQGYEDALAEGNTAILLEQNFDGSYTLNLGNLARGETCVLRLRYAQVLQFEQHGLRLVVPTVIAPRYGDSVADAGLKPHQVVEHDLMAVHPLELTLRIEGELARARIGSPSHPLSMRLEGEGETAAMLVSLGRGGALDRDFILVLDEVAQDSLAVCAQDTLDEGAVNVLASFCPRVPAAAHPLAVKILVDCSGSMQGDSIAAARRALQAIIAGLREGERFSLSRFGSTVEHRSRALWRTSAATRQAGQRWAMQLQADLGGTEMENALASTLALAGDAEPSPGTEEGAAAVDLLLITDGQIHAIDRTVKRARALGNRIFVVGIGSAPAEGVLRRLADETGGACDFVAPGEAVEPAVLRMFARLRSQRMDALQLVWPTGAEPVWMSPLPGSVFDGDAVTVWARFAQVPHGWVPDQPVRLVGRMAQGDAPVALGEASLSAVEPHAVLGRMAVAAQVEQLLAGEGAQSLRAPEALALAVAYQLVSPLTHFLLVEARAEADKPEDMPDLVKVPAMLPAGFGGLGSVDLLYIEPNMAPLTVNDTPTAYGAPAAAGFGSFDMNALDAPAVMRSGARVLRSERRTQASTYDIPAFLRRGADRAADEPPRDDPRYWSAEPHYSGLTPLGLTHWLRSHTQAEWPRTYAALHRIGVGTAVLDWLEFVLADGEDEAQVVACFVEAMAQRELHDALRSTNGMLGRLKALTQRVRPAAAPEARQVEVASESLAARLQVFVSTLQAETWPDCVFALRDAASALERSGVGVE
>NC_011662.2|WP_004303516.1|1922695_1923175_+|MerR-family-transcriptional-regulator
MNSETSPSYPLAELAVLADLPPRTVRYYVQIGLVDRPEGETRAARYGTRHLEQLLQIRKWTAAGVSLERIRELLHGAPPPVPPRERAIGSVSVCSHLTVAEGVEVVIDAQRAGLSPEAVRQFIQGVMAAFEAVQGQGGAASQGAAAHNTDKNDRQAGEP
>NC_011662.2|WP_004303518.1|1922224_1922590_-|hypothetical-protein
MPTPPRATPPADSKGTRAALIFALTAERLSIYYEHGQWLTEAQGASFIADWLRRSERTLPLADRRQLSALSDGLARQIAGSLSREAGLYTAHEMMEALDPNYDSDLARSMMDECARLLDTN
>NC_011662.2|WP_012585157.1|1918095_1921959_-|DUF3427-domain-containing-protein
MSRTIRYYDIEATRFAEDTLGVDMSELHDRFLAHVPAGGLILDAGCGAGRDIKAFMQAGFRVRAFDASVELVHIAKAHSGQAVELRRFDDVEERCCYDGIWACASLLHVPEADLPATLARLWASLKPGGVFYLSFKHGECERRAGERDFTDATEARLSEWVAGLAELESVECWITRDQRPERSEEWLNGLLRRKTLSTHRLFTGEPQHPLLSQLCRSIATADEIDLAVSFVQASGLRLLLPDLYDALARSADESRLPVRVRILTSDYLDITDPSALRLLGLLQAQGARVRIFEAGSRSFHLKAYLFTHFPSPSALHGSVFIGSSNISRPALTDGLEWNYRIEYPGDDGFLEARARFEEIFRDPRTVELTDAWIERYEARRVPPPRPIEPSAEESEKPPNPTPIQQEALAALTRTRHDGYLRGLVVLATGLGKTWLAAFDAEQIGARRVLFVAHREEILKQAADTFVRIRPRARIGFYMGQARDTQVDVLCASVQTLGRNAHLERFAPQHFDYIIIDEFHHAAAPTYRRLLAHFAPQFLLGLTATPDRTDQSDILSLCDDNLVLDRNLFAGIEAGLLAPFHYFGVWDASVDYEEIPWRNGRFDPEKLSNKLATLARARHALKEWRKRAQQRTLAFCVSVRHAEFMATQFRLQGIEAAAVYAGSELARGEALEQLAEGRLAVIFSVDLFNEGVDLPAIDTVLMLRPTESKILFLQQLGRGLRRAEGKERLVVLDFIGNHHSFLHKPQALGQIGSGYKQLAEFARKIETHRLELPTGCYINFDLELIDFLKSLDGDGVARDYEALRDGLGRRPTLAEFYRSGANLGRMRNEYESWFGLVKTMGDLAQTESASLGAHKDLLRELETTAMTKSFKMVLLEAFQELDGWHRTPTLDQLAERSWQVLQRRRPLLADLPDILADTQDGTTTGWQRYWRENPVNAWIGGNQTRQKSQLFRVRSDRFEPVFDVAPEQQETLTEMVQELIDYRLAAYEARRSTTASTDNVIPFPQQRPDRTELPYFPNLRIACGHFRTARADAEEHRSVGTGYGRLDPARHFIARASGNSMNGGKNPIRDGDYLLLELVSPGNAGSITGSVMAIERQDRTGEDQYLLRVVTKQRDGSYVLVANNPDYEDIHVTPEMAEELRTLARLKAIIDPLELAVGESFMREEIPSLFGAEFNQGNWNSGHVVLPERNAHVLLVTLNKQGKSEVHRYLDRWIDDHTFQWSSQNSTTPESKRGREIIEHQNLGITLHLFVRETKLAGGKAAPFMYFGKARYKTHDGSSPMSVVLEIG
>NC_011662.2|WP_004303503.1|1933320_1936026_-|bifunctional-acetate--CoA-ligase-family-protein/GNAT-family-N-acetyltransferase
MSFRHLKSLFNPRSIAVIGASARERRMGNVLMRNLLSGQFAGPIMPVNPRRTSVAGVLTYPSIAALPQTPDLAIICTPAPLVPRLVEELGERGARAVMVMANQLDTTLGADGRPIERSILEITRRYEMRLLGGGTLGILVPGLGLNATFSQIAARPGKLGFVSQRDTVGTMVLDWALRKKVGFSHFVSLGDSLDIGFGEVLDFLAADSGTRAILLYIESIQDRRAFMSAARAAARNKPVIAIKAGRSPDNPLMGVSDPLFLEMPNLVSHDDVHDAALRRAGILRVDQLEEMFGAAETVLRARPLRGNRLVVLSNGGGAGLMVEDSLYLAGYSLPALKEQTIERLRRFMSPAWNGRNPLEIRVDSEPACYERLLKILQEERDGDAVLLIHTPNALSSSIDTAQQVIATARETGINLMTCWVGDESVEKERNLFINAGIATFDSPEHAASAFLHMHRHRIASEVLMEVPTSEPEAFKPDAARARAVIQGALAQSRASLTESESKDVLAAYGVPVIQTHLAATPEEAAQIAGRIGLPVALTLMSRDIRRKWDVGGVALNLESTEAVQVAARGMIERAGRAEPPVSVSGFTVQRMVMRGHARQLLIGVSTDRLFGPVIVFGEGGRALEIFRGLAVGLPPLNKPLADDLITRSKAAALLEARSHLPAADRDALALTLTKVSQIVVDHPEIHEMDINPVFVDEHGVQALDAHMRLRPATAHEHRLAIQPYPKALEEPSRLRDGRPILLRPIRPEDEPAHYAFLSRLTREDFIYRFFNYIPEFPRREMARLTQIDYDREMAFIATATGPDGKPETLGVSRAVADPDNHTAEFALVIRSDLKRQRLGSILMDKLVRYAREIGIQRLVGEVMGENEPMLGLLKHLGFKLKASEEPGVVRASFELRPPSEG
>NC_011662.2|WP_004303501.1|1936167_1936872_-|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MNTVNADPAELQKFSDLAHRWWDPASEFRPLHEINPLRLGWIDGKAALAGKKVLDIGCGGGILAEGMAALGAEVTGIDLSEKALSVARLHLFESGHKVDYRHMSAEALAEESPGRFDVVTCMEMLEHVPDPASIVTACARLVKPGGHVFLSTLNRNPKSYLFAIVGAEYLLKLLPAGTHEYARFIKPSELSRHCRNAHLDVQEIIGLSYNPLAKTYSLGRDTDVNYLMHTVAAG
>NC_011662.2|WP_004303499.1|1936979_1937678_-|OmpA-family-protein
MIKQSKKQMLMLAAIASIGLSAPSAFAQVSDVVVAGKGEIPYVIDARNVVARSGTGLCWRTGYWSPAAASTALAGDLPVGCACDKDIVPADKCTVKAAAAAPGPKPTADKVKLSADALFDFDKAVLKAEGKAKLDQLAAQAKSLKLEVILAVGHTDRLGSNTYNQRLSERRAAAVKTYLVSKGVDANRVYTEGKGETQPVTGNKCDKVGGRAAQISCLQPDRRVEVEVIGSK
>NC_011662.2|WP_004303498.1|1937778_1939098_-|TRZ/ATZ-family-hydrolase
MSEAVDLLINARWIVPVEPRDAVLADHAVAIRGGRIVDLLGQDEARTRYVADEVVELPRHLLIPGLVNLHTHAAMSLLRGIADDLPLMRWLEEAIWPAESRHVSAAFVRDGTLLAAAEMIRGGITTCSDMYFHPEAAAEAFAAAGMRAVVGAVVLEFPTSYASDPEDYLRKGLAARDRWQGHPRLGFSIAPHAPYTVSDDSFHQVQTLADELGLPIHVHIHETAQEIADSLAVHGCRPLARLARLGVLGSNLIGVHAVHLDEADIELLARHGCSVAHCPTSNMKLASGIAPVPRLLAAGVPVGLGTDGAASNNRLDLLQEMRHAALLAKVGSLDATAVPAHAALRMATLGGARALGMDDRIGSIEKGKCADLCALDLSAPQCRPCFDPVSHLVYVCGRENVSHVWIDGETRVDKGVSLLHINDTELLRLVSMWQTKLGN
>NC_011662.2|WP_012585161.1|1939267_1940632_+|serine/threonine-protein-kinase
MNRIPERIGKYRIIKEIGRGATAVVYLAETPDYPEPVALKHVRFDDKARDEAKWNRRLIKLLKAERVVSGRLDHPNIIRIHDASIEPDEAYVVMEYFPGGSLERYCSFQNLLPIHRTIGIVFKCCMALDHAYRQGIVHRDIKPANILVDEQDNVKITDFGLALNINKKLDTDSTFIMGVGSPAYMSPEQIKGYPLNQKTDLYSLGVLLFHMLTGRLPFRASNPAQLVYKIINADPPSVSQLNPDVPEQMDAVIRKALEKDLYSRYRNGAEFAKDLAAVRYQILDEGHVHHDAERFARLRKLAFFTEFEDVDLWEVMRICAWRKVGSDLGLMREGDLDQRFGIVLEGKVELSIGGRRVLEVGPGEVFGEQAWLDQLEHKQLLSAVSLDELSYLEVNPAALALASEEVLERFRRQLGTVAVRRLAAVSRQAAEHAPAAVRAVRAAPVVHDLQIVDY
>NC_011662.2|WP_012585162.1|1940719_1941817_-|ferrochelatase
MPRYRPEPIHRHDSTPRTGVLLVNLGTPAAPTAAALRPYLKQFLSDPRVVEIPRLVWWPILNGIILNTRPKASAQKYASIWTDEGSPLLVHTVRQTKLLAGYLAKDGYDGLDIDYAMRYGAPAIGDTLDAMRARGCTRILVVPMYPQYSASTTATVVDEVGRSLARWRNQPEMRFVRNFHDDPGYIDALVKSVREHWAANGEPERLLLSFHGVPRRSLDLGDPYHCECHKTGRLVAEGLGVARERVLVTFQSRFGKAEWLKPYTQPTLEQLAAEGVRRVDVMCPGFVADCLETLEEIALECKEAFLEKGGQAFHYIPCLNERDAWIKALAALVRKHLGNWLEIAAPDAAARSAALERARTLGAGQ
>NC_011662.2|WP_004303494.1|1941868_1942897_-|heat-inducible-transcriptional-repressor-HrcA
MNPLDARSQILLKTLIERHIADGQPVGSRALSRYSGLELSPATVRNVMSDLEEMGFIASPHTSAGRIPTALGYRFFVDSLLTVQPLENARVRALEGQLLPNQPQRLISSASHLLSELTQFAGVVVAPRKDAVRIRQFEFISLAENRILLIIVTTGGDVQNRLLITRRAYTPTELNGAAAYLNEHFAGLSFEEIRRRLGDELRQLRSDMSELMTATVDAGSEAAEDNAASYVLSGETKLLDVEDLSSNMSQLRELFRLFEQRTGLLQLLDLSNRAEGVQIFIGGESGLAPLDGCSVITAPYEVDGQVVGSLGVIGPTRMAYDRVIPIVDITARLLSNALSSKH
>NC_011662.2|WP_004303492.1|1943016_1943898_+|NAD-kinase
MSTPFRTLALIGKYQSPDVAESVLSIARFLRDRGLAVLIEQGTASSIGGAHDFPVASYEHIGASADLAVVIGGDGTMLHTARRLIEHGVPLVGVNLGRLGFLTDIARSSATERLAEILDGAFTAEDRFMLDVEVLRGGARVFHTLALNDVVVNKGELGRMIEFELSIDEEFVYTQRSDGMIVSTPTGSTAYALSANGPILHPSVGGIALVPLCPHALTARPITLPDSCRIDIVLLPPHDARVHFDGQTRFDLRAGDCVRMTRSSRSLRLLHPEGYSYFAMLRQKLHWSAAPRV
>NC_011662.2|WP_012585163.1|1943980_1945636_+|DNA-repair-protein-RecN
MLRRLTIRDFVIVDRLDLEFAAGFGALTGETGAGKSILLDALGLALGGRGEAAMVRSGRERADVAAEFDLPAGEGLAAWLVEQELPADEGMLILRRTIDMGGRSRAWINGVAATLAQLRAAGEWLADIHGQHAHHALLRTDAQRALLDAQAGAGALVAEVAARHREWQRLLRLQREAEADSASSARERELLAWQLRELEQVGFDIEEWAEINAEHARLAHAASLIEGAEAAVVALGEGELAVCSVLGRLDGRIAALADFDAGLADVRELISAAAIQADEALHALRRYRDRLDLDPGRLAELERRIAAVMEAARKYRVQPEELPALAQQWRERLDTLEATADPARLAAAAQAARAAFESVAAELTAARLPAARRLSEEIAAAMQDLAMAGGRFEVALTPCAPSAAGVEEVEFRVAANAGQPLRSLAKVASGGELSRIGLAIQVITSRDSAVPTLIFDEVDVGIGGRVAEIVGKLLARLGQDRQVLCVTHLPQVAACADWQWRIAKREQGGETLSEVAPLDDAARVEEVARMLGGVNITATTREHAAEMLGRR
>NC_011662.2|WP_004303488.1|1945704_1946145_-|ferric-iron-uptake-transcriptional-regulator
MSDNSRNLKSIGLKATYPRLKILDLFQSSEQRHLTAEDVYRTLMNEGMDIGLATVYRVLTQFEQAGLLERHYFESGKAVFELAEGGHHDHLVCMQCGKVEEFFDAEIERRQNQIALERGFAIREHALYIYADCQRENCPNLGREKD

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Crispr_ID: NC_011662_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_8

2083236-2083317

Orphan

Consensus_repeat	Method
ATCGCGACTCGCGTCGCTCCTGCGGAGA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NC_011662_8

>merge|NC_011662|8|2083236-2083317|CRISPRCasFinder
ATCGCGACTCGCGTCGCTCCTGCGGAGAGTCGTGGCGTGACGGCAAGAGCCTTGATCGCGACTTGCGTCGCTCCTGCGGAGA

>NC_011662|8|8|2083236-2083317|CRISPRCasFinder
ATCGCGACTCGCGTCGCTCCTGCGGAGA	GTCGTGGCGTGACGGCAAGAGCCTTG
ATCGCGACTTGCGTCGCTCCTGCGGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_004319523.1\|2065036_2066434_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NC_011662.2\|WP_004308556.1\|2091819_2093172_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223936
NC_011662.2\|WP_004308558.1\|2093500_2094079_-\|YceI-family-protein	unknown	unknown	gnl\|CDD\|225228
NC_011662.2\|WP_012585213.1\|2062171_2063722_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NC_011662.2\|WP_012585215.1\|2064377_2064737_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|379187
NC_011662.2\|WP_004308547.1\|2086791_2087856_+\|ACR3-family-arsenite-efflux-transporter	unknown	unknown	gnl\|CDD\|213563
NC_011662.2\|WP_041589640.1\|2079463_2083108_-\|exodeoxyribonuclease-V-subunit-gamma	unknown	unknown	gnl\|CDD\|335690
NC_011662.2\|WP_012585224.1\|2090093_2090336_+\|TM0996/MTH895-family-glutaredoxin-like-protein	unknown	unknown	gnl\|CDD\|379063
NC_011662.2\|WP_012585222.1\|2085893_2086790_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|319973
NC_011662.2\|WP_004308549.1\|2087892_2088447_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|132004
NC_011662.2\|WP_012585225.1\|2090399_2091461_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
NC_011662.2\|WP_086014415.1\|2068805_2071454_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|274362
NC_011662.2\|WP_004319516.1\|2073453_2075505_-\|exodeoxyribonuclease-V-subunit-alpha	unknown	unknown	gnl\|CDD\|236783
NC_011662.2\|WP_012585219.1\|2075501_2079467_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236784
NC_011662.2\|WP_012585223.1\|2088621_2090091_+\|permease	unknown	unknown	gnl\|CDD\|281730
NC_011662.2\|WP_004308542.1\|2083491_2084535_+\|ArsJ-associated-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|169599
NC_011662.2\|WP_012585214.1\|2063777_2064368_-\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012585216.1\|2066426_2068571_-\|XylR-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NC_011662.2\|WP_187283043.1\|2084595_2085870_+\|organoarsenical-effux-MFS-transporter-ArsJ	unknown	unknown	gnl\|CDD\|340883
NC_011662.2\|WP_041589639.1\|2071464_2073213_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_004319523.1\|2065036_2066434_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.97442e-167
NC_011662.2\|WP_004308556.1\|2091819_2093172_-\|UDP-glucose/GDP-mannose-dehydrogenase-family-protein	gnl\|CDD\|223936	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane].	0
NC_011662.2\|WP_004308558.1\|2093500_2094079_-\|YceI-family-protein	gnl\|CDD\|225228	COG2353, COG2353, Uncharacterized conserved protein [Function unknown].	4.92343e-49
NC_011662.2\|WP_012585213.1\|2062171_2063722_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.0741e-28
NC_011662.2\|WP_012585215.1\|2064377_2064737_-\|cytochrome-c	gnl\|CDD\|379187	pfam13442, Cytochrome_CBB3, Cytochrome C oxidase, cbb3-type, subunit III.	1.54461e-13
NC_011662.2\|WP_004308547.1\|2086791_2087856_+\|ACR3-family-arsenite-efflux-transporter	gnl\|CDD\|213563	TIGR00832, Uncharacterized_transporter_slr0944, arsenical-resistance protein. The Arsenical Resistance-3 (ACR3) Family (TC 2.A.59) The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport. [Cellular processes, Detoxification, Transport and binding proteins, Anions].	4.76907e-133
NC_011662.2\|WP_041589640.1\|2079463_2083108_-\|exodeoxyribonuclease-V-subunit-gamma	gnl\|CDD\|335690	pfam04257, Exonuc_V_gamma, Exodeoxyribonuclease V, gamma subunit. The Exodeoxyribonuclease V enzyme is a multi-subunit enzyme comprised of the proteins RecB, RecC (this family) and RecD. This enzyme plays an important role in homologous genetic recombination, repair of double strand DNA breaks resistance to UV irradiation and chemical DNA-damage. The enzyme (EC:3.1.11.5) catalyzes ssDNA or dsDNA-dependent ATP hydrolysis, hydrolysis of ssDNA or dsDNA and unwinding of dsDNA. This family consists of two AAA domains.	0
NC_011662.2\|WP_012585224.1\|2090093_2090336_+\|TM0996/MTH895-family-glutaredoxin-like-protein	gnl\|CDD\|379063	pfam13192, Thioredoxin_3, Thioredoxin domain.	1.37128e-25
NC_011662.2\|WP_012585222.1\|2085893_2086790_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|319973	cd16345, LMWP_ArsC, Arsenate reductase of the LMWP family. Arsenate reductase plays an important role in the reduction of intracellular arsenate to arsenite, an important step in arsenic detoxification. The reduction involves three different thiolate nucleophiles. In arsenate reductases of the LMWP family, reduction can be coupled with thioredoxin (Trx)/thioredoxin reductase (TrxR) or glutathione (GSH)/glutaredoxin (Grx).	1.66005e-58
NC_011662.2\|WP_004308549.1\|2087892_2088447_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|132004	TIGR02959, RNA_polymerase_sigma_factor_SigZ, RNA polymerase sigma factor, SigZ family. This family of RNA polymerase sigma factors is a member of the Sigma-70 subfamily (TIGR02937). One of these is designated as SigZ in B. subtilis (Swiss_Prot: SIGZ_BACSU). Interestingly, this group has a very sporatic distribution, B. subtilis, for instance, being the only sequenced strain of Bacilli with a member. Dechloromonas aromatica RCB appears to have two of these sigma factors. A member appears on a plasmid found in Photobacterium profundum SS9 and Vibrio fischeri ES114 (where a second one is chromosomally encoded).	1.07759e-52
NC_011662.2\|WP_012585225.1\|2090399_2091461_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NC_011662.2\|WP_086014415.1\|2068805_2071454_+\|GAF-domain-containing-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.47061e-70
NC_011662.2\|WP_004319516.1\|2073453_2075505_-\|exodeoxyribonuclease-V-subunit-alpha	gnl\|CDD\|236783	PRK10875, recD, exodeoxyribonuclease V subunit alpha.	0
NC_011662.2\|WP_012585219.1\|2075501_2079467_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|236784	PRK10876, recB, exonuclease V subunit beta; Provisional.	0
NC_011662.2\|WP_012585223.1\|2088621_2090091_+\|permease	gnl\|CDD\|281730	pfam03773, ArsP_1, Predicted permease. This family of integral membrane proteins are predicted to be permeases of unknown specificity.	1.91094e-26
NC_011662.2\|WP_004308542.1\|2083491_2084535_+\|ArsJ-associated-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|169599	PRK08955, PRK08955, glyceraldehyde-3-phosphate dehydrogenase; Validated.	0
NC_011662.2\|WP_187283043.1\|2084595_2085870_+\|organoarsenical-effux-MFS-transporter-ArsJ	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.69948e-12
NC_011662.2\|WP_012585216.1\|2066426_2068571_-\|XylR-N-terminal-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	9.81605e-64
NC_011662.2\|WP_041589639.1\|2071464_2073213_+\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	7.86133e-95

>NC_011662.2|WP_041589640.1|2079463_2083108_-|exodeoxyribonuclease-V-subunit-gamma
MTAPAPAASLPPGFIALHGNRIETLLDTVAGWLAQHPLAPLESEVILVQSNGMAEWVKMAIARRAGVCAAAAVQLPARFQWQTYRQVLGRAQVPARSPLDKTALAWRLMRLLPEVLAEPGFAPVAGYLADNDPGRRFQLALRIADLYDQYQVHRPDWLDAWGEGREALPDAGRGETPLTGRGETPLAGRGETPLPEDQRWQARLWQRVVDELDPQQRALTRPQLHDRVLAALDAIAEDAALHPAAALPRRVVLFGMTHVPLPTLQLLAALSRHAQVLLAIPNPCRFHWADILDGREWLRIARRRQPLRDGRELQDVGLDAMHLHAHPLLAAWGRQARDFVRQLDAFDDAEQTRARFPLARIDLFDDDQDTHDVAQPTLLVQVQRHIRDLTPLAEHPHPPVPAEDRSIVFHLAHSPVRELEILHDQLLALLARPPGDKPLRPRDIVVMVPSIDDFAPAIRAVFGQYGRHDPRHIPFDIADLSARASSPLMGAVEWLLRIRHDRCRLSDLGALLDVPAIAARFGLAEEGLPRLTGWMRGAGIRWGLDARHRAGLGLQACGEQNSALFGLRRMLMGYAAGRSEVTTDAPFAGIEPYDEVGGLDAELAGALAHLVERLIRWQADSRRPATPAAWTQRLRALLADLVRAVDDTDRQTLAALDDALERWLEACDEAAFEAELPLAVAAEAWLAALESPALDKRFRAGGVTFCTLMPMRAIPFEVVCLLGMNDGDYPRRSPRSDFDLMALPGQQRPGDRARRDDDRQLMLEALLSARRVLYLSWCGRNVRDNSVQPPSVLVAQLRDYLAAGWSPAVVAERTVEHPLQPFSRRYFEPGTPLLTYAREWRAAHVEAAAQDDAVPSHDGQANREATGRATRPTRGEAASPPLPPFVPDPAVPLTIAALAAFLRNPVKVFFRERLGVVYEDVDEALPDDEAFGFDGLEEHGLVEELAAAVLADLALLPPPELHAFALEAAVEAQLGRIERAGRLPIGGLGLRARAALGEAVLPLLRAWRLVRASHPLDAERGNLRFAHAGALMEDWLDHRVRADEHALPSWLAHDPGRLLEDADKGTLRPWRLLLPWVRSLLAAAADSPSGGLLVGRDATVHIVPTDPAVARALLARLIEAWIAGLGEPLPVAARTALALVGEGKPAEAYEGSEHRRGEVEEASLARCYPDYAALIEDGRFEHLARALYGPLLEWMDSHVEAVPHPAPETQESAR
>NC_011662.2|WP_012585219.1|2075501_2079467_-|UvrD-helicase-domain-containing-protein
MSHRLDPACFPLRGSRLIEASAGTGKTWTIAALYLRLVLGHGDADTAFARPLLPAEILVMTFTRAATRELSERIRERLREAAAWFRNEDAGRAPDPLLDELRAAYPDAAARRNAAWRLAMAAAAMDDAAVFTIDAWCQRMLREHAFDSGNPFDEELAADESVLLTEAAQDYWRQHCYPLAGEALELVLAQWADVHALVEDMRALVGQPLQGADRDDGGDRDRSADPGDQDGVRRDSAGGETLAALIGRVGGAHRRARVALSRGWAERARAMKDWLDEELATKAKLWNRTKLHERYYTPWLEALEQWARNPLDRRLELPDSARHRLTPDGLLEARKADAPAPVLPEHFAAFAGLIEDHDALPDPRTALRIHAATRVGERLAELKRQARSFGFADLLDRLDRALAGPHGARLRERILTQYPVALIDEFQDTSPLQYRLFDALYRAADDDPRSALLLIGDPKQSIYGFRGADIYSYLQARRATAGRHYMLGTNFRSAHALVGAVNAWFAQAEDRPGAGAFGFRDGADNALPFEAVAAQGREEVFHADGGVPPALLIHHDLTLRSAGEIRRLFAARCAERIVGWLNDEHAGFQAPGKAFQRLRPADIAVLVRSGREAAEVRRALRRRGLASVYLSDKDSVFASAEAHDLLHWLRAVASPLDARLVRAALATRTVGLSIPELARLASSDAAFDARSEQFRALHVAWRELGVLTMLRRSLHLLDLPARWLAEPEGERRLTNFLHLAELLQQAGATLEGETALVRWLAMTIEAGGSRAGEEQVVRLESDADLVKVVTVHKSKGLEYPVVCLPFATSFRAVERRTARYLKLADASGRRRLALDYDDADLERAEAERLREDLRLFYVALTRARHALWMGFAAVRIGKGKACQTHRSAPGHLLAGGAALDEAAWLAPLQALATAAAQDGATGTEADGRTRIALEAAPPEEAHTLLRRREALPPLQDSAPYRADFERRWSLGSFSALVRDIDPAQMVALPGAGSAPPAPARGTTADLFAAAPDEAGSAAPLAADDYGQAEAAGAARILPVHVRRPAADEALVRLEEDAALAPSGADGGLALAPPDTDRPPWHRFPRGAFAGDFLHDVLEWLAAEGFALGANEGLEAALRRRCERAGHGERTDELVQWMRALLGARLPSLDAALQDLRVLITEMEFWLPSAHLQATAVDALCRRHLLHAQPRPALPQRELHGMLMGFADLVFEHDGRYWVLDYKSNSLGEDGSAYDRAALEAAMAHHRYDVQAAIYLLALHRLLRARLGGAYEPARQLGGALYLFLRGIDGPARGEYAIPATPALIELLDTLDHLLADEASLA
>NC_011662.2|WP_004319516.1|2073453_2075505_-|exodeoxyribonuclease-V-subunit-alpha
MSPIHASPSPAAAPHAATAPSAPTDALLATLDAWTDAGLLRQLDSAFARFIASLDPAAPPALLVGAAVLARMEGRGHSCLPLAPLAATDQDLLAWPMEAQAAIAALWQNLPADSAAWLAALQQSPVVRRIGHDPELGQPLLVDGPDTAPRLYLRRYWQYERSVAAAVAARCAQPEPVDEARARTWLDRLFPAAPGTPAHEAAVDWQKLACAIALRGRLSILTGGPGTGKTYTAARLLALMLATHPAPERLRIALAAPTGKAAARLRQAIDGSLQALQRSLGGHLDLAALTRRIGAARTLHALLGARPDTRRFRHHAGNPLDVDVVIVDEASMVHLEMMAALLEALPHGARLVLLGDKDQLASVEAGAVLGDLCRDASDGRYDAETARYLLATTGEALPTRYLEPTDKAPALAQHTVMLRESRRFEGPIGALAHAVNAARDPALPARLLREDASGALHGVEGGPVAAVIALALGGRRGAPACYRDYLELLARGPAGKDAEAHAAWATAILHAFDRFRVLCAVREGDWGMAGLNRAIEHALARARLLSPRGTWYAGRPVMVTRNDPALGVFNGDIGITLPALESGGLRVHFLDGEALRSVAASRLAHVETAFAMTVHKSQGSEFEHTVLVLAAQSGNVLVRELIYTAITRARKAFSLVAEREGLLEHGVLQATRRESGLLDFQGT
>NC_011662.2|WP_041589639.1|2071464_2073213_+|EAL-domain-containing-protein
MQVDADILIVDDNPANVELLLALLEDAGYLRLEGITDPRRVAARVAEHAPDLILLDVRMPHLNGLELMERLSAGGAEAPAVIILTAQIDDATRYRALELGARDFLTKPFDQVEVLQRIRNVLHMQRLMKERAERAELLEALVAERTQELVARARHDPLTGLPNRLSLLDELGAWLAARRDAAVLFLSIEGMDEVSRLHGFGVADELARAAARRLRECVPEGFLAVWNSTQWVLLCDCAPARGATGALAERLLAGFRPPVEVEHMRLHLGLRIGIAAEADERSPEQLVRMAALALPAGEGQWQAYEAELETRMQRRNGIREALRGAVGRDEFSLVYQPKVELCSGDIVGVEALLRWDSSAYGRVSPAEFVPIAEASGEILAIGGWVVRAALATLRRWREARRVADVFGMAINVSTQQLMQPDFAERLVAEVEASGVPPAALELEVTESGLMQDMALAARHLDHLARAGFRIAIDDFGTGHSSLAYLKALPVSVLKIDRAFIRELHANPADQRLTGTVIDMARHFEFITVAEGVEQEAQLERLIDMGCDLVQGFMFAPPLKEDALFRLMKTGFAHMPVFGGAVA
>NC_011662.2|WP_086014415.1|2068805_2071454_+|GAF-domain-containing-protein
MDPAMIDPGLPADEPERLAELRALAILDTPREDAFDNLMQLAASIFGVPIALVSLVDDARQWFKSAHGLCVAQTPRDVSFCTHVVFSNAPLVVEDAARDPRFADNPLVTAAPQVRFYAGEPLRSDQGFVLGTLCVIDTVPRRFEEAERARLRLLARQAEQLIRLHRKRQRLADEARRSARIAARYQAITEGAAAGILRIDGRGRIIEVNRFACALFGYEEAELRGHNVRMLMPEPFRSAHDGHLEAYQRTGVARVIGKGTEVDALHRDGRHIPVQLTVSEVSQGAQADDFEGRHFIGILSDLRDVHQVRERERQERALLEVLHRGLTDYHALISGNTLWGFLKDALCALTGSAYGLIGEVEHGEGGPALKIHAITDLSWNDETRGLMRKLVSGDMRLSNPASMLGRVFARGEVVLSNAMRSDPRGGAMPPGHPPLSRYLGVPIMDRGEVIGMFAIANAPQDYPDELVDWLKPFTSTCALLINLYRLFKEQQRFTEELQQARDQAEKANQAKTEFLSSMSHELRTPLNAILGFAQLLQNGRQPLSERQLRQVEQIARSGRHLLQLINEVLDLARIESGRLQVSLEPMLAHDVIEDAAQIVLPLAEQQGIALALPPAQACALRFTGDYTRVKQILINLLGNAIKYNRPGGAVEVRCEAVGGRCRIGVVDTGIGIPASRLGELFQPFNRLGAESGSIEGTGVGLALTRKLVDLMHGELGVHSREGEGSAFWFELPLCEQAPAVRDEARAAAAPQALSRRHRVLHVEDNPANRQLMQDVFEDVGQAVLHSVDSAEAGIEAACSDPPDLILMDIDLPGMSGLEARALLARNPLTAHIPVLAISAAASPHTVRKAREAGFIDYVTKPFDVPALVARLGQILEHRSSDD
>NC_011662.2|WP_012585216.1|2066426_2068571_-|XylR-N-terminal-domain-containing-protein
MRSDELDFHALIDFMPDSGAIRFCGRRAILVHADSMGALRKELVETLGSEIAKVVLTRYGFSCGYEDAELLAAYMHPDSLEEFILGGPRTHMFSGIAEVAPDALELDHASGRYRMSGRWRHSYEAEQHLRLFGRADEPVCWTLTGYASGFASRVLQADMICVETACEGRGDPHCAWTLMNASDCAPELAGLREYFKPLNLRDRLNLLESRVHERTRELEASEQRYRNLIEDLPEMAFALHASGRLLHLNKAARLRLGVSEARLHALRLKDLVLPDYTARATAFLKEIAARRSTTTLDLVMRDAAGLPFPVRLQVEPVLKDDRIVGYSGLALDISAQLERERELTEYARRIESREQQIQDVINEAVYILDGQGRLSFVNTRMAELLGAAPEAAIGHAVGDFMPASSAARIERDFARRIAGEAGRPFEIALSGREGSSVVLEVNSTLFVGRDVAEGVIGVARDITARRQMERELAQANRLSALGQFASGVAHEINNPLGLVSGYAEELQALLDQCTPLGDDRRLAQLRRGLATIQQQAHRCKAITANLLAFSRRQSASLETVDVGLFVAERLAFFNDAGLTRGVELAVDIAPGLPQAGTSPALLEQVLQNLIKNACDAMNGSGRIDIAARAVGEGIEIEIGDSGPGFAPGVAERVFDPFFTTKPPGKGTGLGLSICYAIINELGGRIACGNRPQGGAWFRLVLPLAEDGPGAAKHD
>NC_011662.2|WP_004319523.1|2065036_2066434_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MTDRPITDRHVLIVDDEELYRELLGGRLGRQGYRISEAGDGEGALRCIEGGGVELALIDIKMPGMDGIELLERIKQLAPRTEVVVLTGHGSIDSAIAAMKLGAFDYLTKPYQLTELDLVVARALERSALARRCDALSVEVARLRSRDDDGMVGDSPAWLRMLEQVRRAAALDVPVLLTGESGAGKEVVAAALHRWSRRAGEAYVPVNCGLLEGELVESELFGHKRGAFTGASADREGLFELASAGTLFLDEIGELPLACQAKLLRVLDSGEFRPLGASAVRRTGARVIAATHRDLEALVAAGRFRHDLLYRLDVVHIVVPPLRERREDIPLLVEHLLHQAVRRHPGTPAPRVEPQALQRLIDYAWPGNVRELRNVVERLLVFADGDRIDAARVDALLHPGARTVASTGRTGFERIVPLAEMEQAYLRWVVDKLDGNVSAAATRLGIARSTIYRLLRPHADEGARP
>NC_011662.2|WP_012585215.1|2064377_2064737_-|cytochrome-c
MQSNKIRILVASLALSCAHIALAADPPAEGRDRTYAKVCSFCHDKGVGPAILGRALPAAYIENVVRHGFRAMPSFRSSEIDNAALASVARWVSQSPASKASTASPASPAPSAAPATKAQ
>NC_011662.2|WP_012585214.1|2063777_2064368_-|hypothetical-protein
MDRREFFRRTGGGMLLGAPLASLPATAAALVSPAGAAAAVVVIGQADRSGAVTLAQRLAAALGHGGRPLPVHARDAAALRRPEQVDALLALPHGTRLLGVMDDASAIVFLAMASSRGAHLLAHGHHRLASQGATRHTCSATGCGEALAWHEPASHPATHVERFYLATLGETTPGARTSLPAVPGGDEALASFLIRL
>NC_011662.2|WP_012585213.1|2062171_2063722_-|FAD-binding-oxidoreductase
MTTTPRNVLPKGVSANDFEQALAQIRAIVGAEYVVAEDTALAPYNKIMMAVPDEQHAPSAAVMPDSVEQIQAILKVLNQHRIPVYPISTGKNLGYGSAAPVERGQLVMDLRRMNRILDVDAELCTALVEPGVTYQQLYDYLQEKKLPLWFSCPAPSVIAGPLGNMVDRGVGYTPYGEHFLFSSGMEVVLADGEVLRTGMGSMPGSNTWQVFKWGYGPTLDGIFTQSNYGIVTKMGMWLMPAPPDYRPFLIQYPEDTDITKIVDALRPLRIAMVIPNAVVIAHTLWEAPCTKVNRADYHPGPGAISDEAVQKIRKDHNLGAWNVYAALYGTPETNAANWKIIEQVAAATGGTLITDSTEQGGRATQYRFDLMKGKPNLGEFDLYNWRGGGGSMWFAPVSQAKGSETLKQMQLAKGILAKYGFDYVGEFIVGWRDMHHVIDLLYDRSDAEQMKKAHACFDELLQAFAREGYGVYRANTAFAEKVAATYGPVKRDVERRLKRALDPNNIIAPGRCGISI
>NC_011662.2|WP_004308542.1|2083491_2084535_+|ArsJ-associated-glyceraldehyde-3-phosphate-dehydrogenase
MKVGINGMGRIGRLALRAAMGAAERQADDPRADNRLEVVHLNEIKGGAAASAHLLAFDSVQGRWRADIRADGEDAIRIDGRRLSFSAHASPADIPWGELGVDVVLECTGKILTPEALQGHLDRGARRVIVAAPVKTGGVLNIVVGINHELYDPARDRIVTAASCTTNCLAPVVKVVHENLGIRHGQITTIHDPTNTNLVVDAPHKDLRRARSSLLSLAPTTTGSATAIALIYPELKGKLNGHAVRAPVLNASLTDCVFELRRATTVEEVNALFKAAAEGPLAGILGYEERPLVSIDYARDTRSAIVDALSTMVTDGTLLKVYAWYDNEMGYACRMVDLACHMEAVGL
>NC_011662.2|WP_187283043.1|2084595_2085870_+|organoarsenical-effux-MFS-transporter-ArsJ
MGRPGGGPQHAARNYAVVTAAYWGFTLTDGALRMLVLLHFYRLGYSPFTLAFLFLLYEAAGVLANLVGGWLATQHGIARMLAVGLVTQILGFGLLSALDPGWTATMAVAWVVVAQGICGVAKDLTKTASKSAIKLTQAQFQAEANEQGAGQLFKWVAWFTGSKNAMKGIGFFLGGVLLEVLGFRGALWAMAGLLALVLAGVLLALPPMMGRKKASGSVRELFAKSPGINALAAARVALFGARDVWFVVGVPVFLYSAGWTFTMVGTFLAGWTIAYGLVQALAPQIVRRSADGLSREVPAARLWSALLALIPAALAVAVWLQVPGLEWVVVGGLGLFGFAFAVNSSVHSYLVLAYAGSEKAAEDVGFYYAANALGRFIGTLLSGLLYQWGGLPYALVGSAAMLLGCWLVTLALPLERHDAARAAP
>NC_011662.2|WP_012585222.1|2085893_2086790_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MDKKAAVSAFEALSSGIRLDVFRLLVRAGPQGRVAGELASALGLPPTNLSFHLKALAQAGLVSAEQEGRFQRYRADMARMRGLIAYLTEECCGGAPALCGLDGSASTTGSTTPAARHAAGQTRRPGSSMSDECYNVLFLCSANSARSIIAEVILNRIGQGRFKACSAGSAPRGEVHPMTLQVLQAQGYDTSLLRSKSWDEFSDADAPQMDFVFTVCDTIAGETCPVWPGQPLTAHWGVADPVKAEGGEQRRLDAFSLTLNQLLDRLRLFTSLPLATLDRLAVQHEIDRIGQMPAAVEA
>NC_011662.2|WP_004308547.1|2086791_2087856_+|ACR3-family-arsenite-efflux-transporter
MGLFERYLTVWVGLGILAGVGLGLLAPGAFQAIAGLEFAQVNLVVAVFIWVMIYPMMIQIDWHAVRDVGKKPQGLVLTLVVNWLIKPFTMAALGVLFFQHLFAPWVDPASASEYIAGMILLGVAPCTAMVFVWSQLVKGDPNYTLVQVSVNDLVMVFAFAPIAAFLLGVTDLVVPWETLLLSTVLYVVLPLLAGMATRHVLERRSAQAVAGFVARLKPWSIVGLIATVVLLFGFQARTLVEQPLVIGLIAVPLLVQSYGIFLIAYLAAKVMRLPHEVAGPACLIGTSNFFELAVAVAISLFGLNSGAALATVVGVLVEVPVMLSLVAIVNRTRHWFPSAAGPQAALDRPGGARG
>NC_011662.2|WP_004308549.1|2087892_2088447_+|sigma-70-family-RNA-polymerase-sigma-factor
MTVPCLLDAWSAHEAELLRYLRHHLRQPGEAEDLLHDLFLKAVRQRERFCAVGNPRAWLFAVARNLVIDNARRTHASVPLPDDLAAPAPDLASEDGPAPVDLLSACLPRVLGELAAEDREAIERCDIGGMTQQAFAELEGLSLSGAKSRVQRARQRLRAQLLRACQVQLDEHGKVCCFVPRPPL
>NC_011662.2|WP_012585223.1|2088621_2090091_+|permease
MDALSSWVLPVFYGGLGNLAAYLAAHVLLCLLPAFFIAGAMSALIPKETITRFLGRNSSKTVSYPAAAAAGSLLAVCSCTIVPLFAGIYKKGAGLGPAITFLFFAPAANILALVYTGGIIGPDLAVARFLLSLTFGIGIGLIMALLFRADDAAHDLATDSAFGAQGAGMGRMALVFLFVWVALLLAGTLKLDVLTGTYLNFQLPIGDAQGWQAALDRLVPYDAAKGEEGVSVQGVVLIALLASIGYAAWRGLENIADGANAWTWVSLALIAATLLVAALAVQPVDGGLRIGLTGKFFAVAAALAALAFIVRHRLSEDELRDWLWESWRFVKQIFPLLVVGVFVVGMIRVLIRPEWIEMLAGTNSLTGNLAGVVFGVFMYFPTLVEVPIAKMFLELGMHRGPLLAYLMSDPELSLQSILIISAIIGRRKTFSYVGLVALFSAAAGLIYGAWIDGASLFSLALYLAGFIAVLAVLLAVASRRATASTLKGV
>NC_011662.2|WP_012585224.1|2090093_2090336_+|TM0996/MTH895-family-glutaredoxin-like-protein
MLDIKVLGPGCANCRKLEEIVHEALAATGVEAEVTKVTDMGQIVAYDVLKTPGLVINEKLVSSGRIPTAATIAEWIRAVG
>NC_011662.2|WP_012585225.1|2090399_2091461_-|NAD(P)-dependent-alcohol-dehydrogenase
MTVKAYGAHAGDQPLEAMEITRRAPGAHDVQIEIAFCGVCHSDLHQVRSEWPGTLYPCVPGHEIVGRVSAVGAHVKGFKTGELVGVGCIVDSCQHCEDCDAGLENYCDGMVGTYNSPIADAPGHTLGGYSQRIVVHERYVLRIRHPEAQLAAVAPLLCAGITTWSPLRHWKVGPGQKVGIVGIGGLGHMGVKLAHALGAHVVAFTSSESKRAAALALGADEVVVSRDEDAMKARRKSLDFILNTVAAPHDLDAYLALLKRDGTMSLVGAPASPHPSPQVFHLIMKRRKLAGSMIGGIPETQEMLDFCAEHGIVADIEMIRAEQIDAAYERMLRGDVKYRFVIDSASLAGEGSA
>NC_011662.2|WP_004308556.1|2091819_2093172_-|UDP-glucose/GDP-mannose-dehydrogenase-family-protein
MKLAIFGTGYVGLVSGACLAEVGHDVLCMDVDQAKIDQLRAGTIPIWEPGLQPIVERNLAEGRLRFTTDAAEAVRHAEVQFIAVGTPPDEDGSADLQYVLAVAEEIARHMPGYRVIVNKSTVPVGTAGKVQERIAQVLAERGETVAFDVVSNPEFLKEGAAVADFLKPDRILVGTRSARAQERMREIYEPFNRNHERTLFTDVRSAELTKYAANAMLATRISLMNELANLAERLDADIEEVRKGIGADPRIGYHFIYPGCGYGGSCFPKDVRALGRIAEQVGYDAPLLRAVEAVNERQKNTLFAKLADHFGGAGGLAGRTIAVWGLAFKPNTDDLREAPSRSLIEALWQHGARVQAYDPVAMDEMRRLYGPRADLALASNKYSVLEGADALAICTEWQQFRAPDFDEMASLLQAKVIADGRNLYPPDRLRAAGWHYYGIGRPERPQAAVP
>NC_011662.2|WP_004308558.1|2093500_2094079_-|YceI-family-protein
MNRIARLTAALLVSAAAASPALAAPQTYVVDGTHTFPSFSYSHFGLSTQLSKFDKTTGTVTLDKEAKTGAVDITIDMKSVNTGYETFNGHIQGEDFLDTAKYPTATFKSTKVSFDGDKPATIDGELTIKGVTKPVTLKVSHFVTMPHPMLKKDTIGANASTVIKRSEFNAGKFAPHVGDDVTITVSLEAIQN

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Crispr_ID: NC_011662_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_9

2518071-2520906

TypeI-E

Consensus_repeat	Method
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	PILER-CR
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CRISPRCasFinder
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CRT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	PILER-CR

46 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NC_011662_9

>merge|NC_011662|9|2518071-2520906|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GGTTCCCCCGCGTCCGCGGGGATAGGCCCCCAGGCGCAGAACGCCCGGTCGGCCTCGGCGAGGTTCCCCCGCGTCCGCGGGGATAGGCCCTCGAACACGTAAGCCATGCCGCCGCACTGCTGGGTTCCCCCGCGTCCGCGGGGATAGGCCCTCGCCCTGCTCCATGCTCTCGAATGCGAGCGAGGTTCCCCCGCGTCCGCGGGGATAGGCCCTCGTTGATCGTGATCGGCTCGTCGGCGTCTTGGGTTCCCCCGCGTCCGCGGGGATAGGCCCCTCGAAGAAGCGCCGCCAGGCGACAAGCCCGTGGTTCCCCCGCGTCCGCGGGGATAGGCCCGCGACCTTCTCAGCGTCATACAGGCCGTCCGTGGTTCCCCCGCGTCCGCGGGGATAGGCCCCATCGACATCATGTGGGAGGCCCCTACGGTCGGGTTCCCCCGCGTCCGCGGGGATAGGCCCAGGGCGCGCCGTGCTCGATGATCCGGCGTCGGGGTTCCCCCGCGTCCGCGGGGATAGGCCCCTGCTCGAGGCCTGACATGGACAAGATCACAGGGTTCCCCCGCGTCCGCGGGGATAGGCCCTCGCGCAGGCCGCGGGCGATCCACGTCGGGCCGGTTCCCCCGCGTCCGCGGGGATAGGCCCGTGCCGGCGGTGTCGTGCTGGTGCCAGGCGCCGGTTCCCCCGCGTCCGCGGGGATAGGCCCTCGGCGACGAAGTTCCGGTAGGTCGCGCCCGGGGTTCCCCCGCGTCCGCGGGGATAGGCCGCTGTCGCGGCGCTTGTCGGCCTCGTCTTCCACGGTTCCCCCGCGTCCGCGGGGATAGGCCCGCGGGAAGGGCGCGATAGATCTGCGCAGCGCGGGTTCCCCCGCGTCCGCGGGGATAGGCCCCTCCGCCCGCTATGACGGGCAACCGTAACACCGGTTCCCCCGCGTCCGCGGGGATAGGCCCTTGAGTTGCTCGATCGTGGCGGCCTGAACGACGGTTCCCCCGCGTCCGCGGGGATAGGCCCCGCGACTACTACATGCCGCTGTGCATCCTCAAGGTTCCCCCGCGTCCGCGGGGATAGGCCCTTGCCGATGATGGCGACCGTCTGCTCGAGCGAGGTTCCCCCGCGTCCGCGGGGATAGGCCCGTGTTCCGTGCCGATTCGGTTGCCCCATTACCGGTTCCCCCGCGTCCGCGGGGATAGGCCCGTCCACGAAAAAATACCTATGGATTGCAATCAGGTTCCCCCGCGTCCGCGGGGATAGGCCCTGTACCTGAATCGAGTTTCGTCGCCGGAGTGGGGTTCCCCCGCGTCCGCGGGGATAGGCCCGAGCCCGGGCGGGGGGATTGCACTGTTTGCCGGGTTCCCCCGCGTCCGCGGGGATAGGCCCGTCCAGGCATAGGTCGGGCTAGTGACGCCACTGGTTCCCCCGCGTCCGCGGGGATAGGCCCTGGATCGGGTCTTCGGGCATTCCGACCTCAACGGTTCCCCCGCGTCCGCGGGGATAGGCCCTGTACTGGGTGATCAGATGCACGCCCCAGACGGGTTCCCCCGCGTCCGCGGGGATAGGCCCGGACAGACCGCTACCGTCCTCGCGTCGTACAAGGTTCCCCCGCGTCCGCGGGGATAGGCCCGGACAGACCGCTACCGTCCTCGCGTCGTACAAGGTTCCCCCGCGTCCGCGGGGATAGGCCCGGACAGACCGCTACCGTCCTCGCGTCGTACAAGGTTCCCCCGCGTCCGCGGGGATAGGCCCTCAGCCAGGAACAGCGCGACAGTCTGCGCCGCGGTTCCCCCGCGTCCGCGGGGATAGGCCCGTGCGCTCCCACGGATAGAGTTGCGCCGCCCGGGTTCCCCCGCGTCCGCGGGGATAGGCCCCTGAGCCGCCAGGCTGTCATCAATGACGACCTGGTTCCCCCGCGTCCGCGGGGATAGGCCCGAATCTCGCCTGCCTTTCATTGAGCGCCATTCGGTTCCCCCGCGTCCGCGGGGATAGGCCCGGCGGCGTTGTAGATCGGCTGTCCCACATCCAGGTTCCCCCGCGTCCGCGGGGATAGGCCCTCGGAGGTGGCGCCCCCGTTTTGGCCTTCGGCGGTTCCCCCGCGTCCGCGGGGATAGGCCCCATTCCGGCGTCGGATAGAACTGGTGCGACTTGGTTCCCCCGCGTCCGCGGGGATAGGCCCTGCTGTGTTGCGTAATTCGCCGACAGCACGCCGGTTCCCCCGCGTCCGCGGGGATAGGCCCGCCGACGAACGTCCAAGTGTGGTCCTCACCCTGGTTCCCCCGCGTCCGCGGGGATAGGCCCGAATACCAGATCCCGCGCGGTCGGGTCTATTTGGTTCCCCCACGTCCGCGGGGATAGGCCGCCGATCGACGCCGTCACCGGCGCCACCATCGGGTTCCCCCGCGTCCGCGGGGATAGGCCCCACCTCACGGCCGCCCCGCGATCACGTGGTCAGGTTCCCCCGCGTCCGCGGGGATAGGCCCCTCCACTCGTGTGTACGGGATGCCCGTTCCACGGTTCCCCCGCGTCCGCGGGGATAGGCCCGGCTCGGTGTGCGCGGCAAGGAGGCTCGGTCTGGTTCCCCCGCGTCCGCGGGGATAGGCCCGGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGGGGTTCCCCCGCGTCCGCGGGGATAGGCCCGGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGGGGTTCCCCCGCGTCCGCGGGGATAGGCCCGAGCGGCCCGAGTATCCGCCGGTGCTGACCGGGGTTCCCCCGCGTCCGCGGGGATAGGCCCCAGTACTTTGGCCTCACCACGCCCGAGCTGCAGGTTCCCCAGCGTCCGCGGGGATAGGCCC

>NC_011662|9|1|2518071-2519441|PILER-CR
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CCAGGCGCAGAACGCCCGGTCGGCCTCGGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGAACACGTAAGCCATGCCGCCGCACTGCTG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGCCCTGCTCCATGCTCTCGAATGCGAGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGTTGATCGTGATCGGCTCGTCGGCGTCTTG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCGAAGAAGCGCCGCCAGGCGACAAGCCCGT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCGACCTTCTCAGCGTCATACAGGCCGTCCGT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CATCGACATCATGTGGGAGGCCCCTACGGTCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	AGGGCGCGCCGTGCTCGATGATCCGGCGTCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTGCTCGAGGCCTGACATGGACAAGATCACAG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGCGCAGGCCGCGGGCGATCCACGTCGGGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGCCGGCGGTGTCGTGCTGGTGCCAGGCGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGGCGACGAAGTTCCGGTAGGTCGCGCCCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCG	CTGTCGCGGCGCTTGTCGGCCTCGTCTTCCAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCGGGAAGGGCGCGATAGATCTGCGCAGCGCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCCGCCCGCTATGACGGGCAACCGTAACACC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TTGAGTTGCTCGATCGTGGCGGCCTGAACGAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CGCGACTACTACATGCCGCTGTGCATCCTCAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TTGCCGATGATGGCGACCGTCTGCTCGAGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGTTCCGTGCCGATTCGGTTGCCCCATTACC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTCCACGAAAAAATACCTATGGATTGCAATCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGTACCTGAATCGAGTTTCGTCGCCGGAGTGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAGCCCGGGCGGGGGGATTGCACTGTTTGCCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCCGTCCAGGCATAGGTCGGGCTAGTGACGCCACTGGTTCCCCCGCGTCCGCGGGGATAGGCCCTGGATCGGGTCTTCGGGCATTCCGACCTCAACGGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGTACTGGGTGATCAGATGCACGCCCCAGACG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCAGCCAGGAACAGCGCGACAGTCTGCGCCGC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGCGCTCCCACGGATAGAGTTGCGCCGCCCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTGAGCCGCCAGGCTGTCATCAATGACGACCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAATCTCGCCTGCCTTTCATTGAGCGCCATTC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGCGGCGTTGTAGATCGGCTGTCCCACATCCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGGAGGTGGCGCCCCCGTTTTGGCCTTCGGC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CATTCCGGCGTCGGATAGAACTGGTGCGACTT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGCTGTGTTGCGTAATTCGCCGACAGCACGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCCGACGAACGTCCAAGTGTGGTCCTCACCCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAATACCAGATCCCGCGCGGTCGGGTCTATTT
GGTTCCCCCACGTCCGCGGGGATAGGCCG	CCGATCGACGCCGTCACCGGCGCCACCATCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CACCTCACGGCCGCCCCGCGATCACGTGGTCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCCACTCGTGTGTACGGGATGCCCGTTCCAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGCTCGGTGTGCGCGGCAAGGAGGCTCGGTCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAGCGGCCCGAGTATCCGCCGGTGCTGACCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CAGTACTTTGGCCTCACCACGCCCGAGCTGCA


>NC_011662|9|9|2518071-2520906|CRISPRCasFinder
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CCAGGCGCAGAACGCCCGGTCGGCCTCGGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGAACACGTAAGCCATGCCGCCGCACTGCTG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGCCCTGCTCCATGCTCTCGAATGCGAGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGTTGATCGTGATCGGCTCGTCGGCGTCTTG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCGAAGAAGCGCCGCCAGGCGACAAGCCCGT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCGACCTTCTCAGCGTCATACAGGCCGTCCGT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CATCGACATCATGTGGGAGGCCCCTACGGTCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	AGGGCGCGCCGTGCTCGATGATCCGGCGTCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTGCTCGAGGCCTGACATGGACAAGATCACAG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGCGCAGGCCGCGGGCGATCCACGTCGGGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGCCGGCGGTGTCGTGCTGGTGCCAGGCGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGGCGACGAAGTTCCGGTAGGTCGCGCCCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCG	CTGTCGCGGCGCTTGTCGGCCTCGTCTTCCAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCGGGAAGGGCGCGATAGATCTGCGCAGCGCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCCGCCCGCTATGACGGGCAACCGTAACACC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TTGAGTTGCTCGATCGTGGCGGCCTGAACGAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CGCGACTACTACATGCCGCTGTGCATCCTCAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TTGCCGATGATGGCGACCGTCTGCTCGAGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGTTCCGTGCCGATTCGGTTGCCCCATTACC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTCCACGAAAAAATACCTATGGATTGCAATCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGTACCTGAATCGAGTTTCGTCGCCGGAGTGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAGCCCGGGCGGGGGGATTGCACTGTTTGCCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTCCAGGCATAGGTCGGGCTAGTGACGCCACT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGGATCGGGTCTTCGGGCATTCCGACCTCAAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGTACTGGGTGATCAGATGCACGCCCCAGACG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCAGCCAGGAACAGCGCGACAGTCTGCGCCGC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGCGCTCCCACGGATAGAGTTGCGCCGCCCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTGAGCCGCCAGGCTGTCATCAATGACGACCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAATCTCGCCTGCCTTTCATTGAGCGCCATTC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGCGGCGTTGTAGATCGGCTGTCCCACATCCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGGAGGTGGCGCCCCCGTTTTGGCCTTCGGC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CATTCCGGCGTCGGATAGAACTGGTGCGACTT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGCTGTGTTGCGTAATTCGCCGACAGCACGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCCGACGAACGTCCAAGTGTGGTCCTCACCCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAATACCAGATCCCGCGCGGTCGGGTCTATTT
GGTTCCCCCACGTCCGCGGGGATAGGCCG	CCGATCGACGCCGTCACCGGCGCCACCATCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CACCTCACGGCCGCCCCGCGATCACGTGGTCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCCACTCGTGTGTACGGGATGCCCGTTCCAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGCTCGGTGTGCGCGGCAAGGAGGCTCGGTCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAGCGGCCCGAGTATCCGCCGGTGCTGACCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CAGTACTTTGGCCTCACCACGCCCGAGCTGCA
GGTTCCCCAGCGTCCGCGGGGATAGGCCC

>NC_011662|9|1|2518071-2520906|CRT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CCAGGCGCAGAACGCCCGGTCGGCCTCGGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGAACACGTAAGCCATGCCGCCGCACTGCTG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGCCCTGCTCCATGCTCTCGAATGCGAGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGTTGATCGTGATCGGCTCGTCGGCGTCTTG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCGAAGAAGCGCCGCCAGGCGACAAGCCCGT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCGACCTTCTCAGCGTCATACAGGCCGTCCGT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CATCGACATCATGTGGGAGGCCCCTACGGTCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	AGGGCGCGCCGTGCTCGATGATCCGGCGTCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTGCTCGAGGCCTGACATGGACAAGATCACAG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGCGCAGGCCGCGGGCGATCCACGTCGGGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGCCGGCGGTGTCGTGCTGGTGCCAGGCGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGGCGACGAAGTTCCGGTAGGTCGCGCCCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCG	CTGTCGCGGCGCTTGTCGGCCTCGTCTTCCAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCGGGAAGGGCGCGATAGATCTGCGCAGCGCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCCGCCCGCTATGACGGGCAACCGTAACACC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TTGAGTTGCTCGATCGTGGCGGCCTGAACGAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CGCGACTACTACATGCCGCTGTGCATCCTCAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TTGCCGATGATGGCGACCGTCTGCTCGAGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGTTCCGTGCCGATTCGGTTGCCCCATTACC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTCCACGAAAAAATACCTATGGATTGCAATCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGTACCTGAATCGAGTTTCGTCGCCGGAGTGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAGCCCGGGCGGGGGGATTGCACTGTTTGCCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTCCAGGCATAGGTCGGGCTAGTGACGCCACT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGGATCGGGTCTTCGGGCATTCCGACCTCAAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGTACTGGGTGATCAGATGCACGCCCCAGACG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCAGCCAGGAACAGCGCGACAGTCTGCGCCGC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGCGCTCCCACGGATAGAGTTGCGCCGCCCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTGAGCCGCCAGGCTGTCATCAATGACGACCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAATCTCGCCTGCCTTTCATTGAGCGCCATTC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGCGGCGTTGTAGATCGGCTGTCCCACATCCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGGAGGTGGCGCCCCCGTTTTGGCCTTCGGC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CATTCCGGCGTCGGATAGAACTGGTGCGACTT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGCTGTGTTGCGTAATTCGCCGACAGCACGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCCGACGAACGTCCAAGTGTGGTCCTCACCCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAATACCAGATCCCGCGCGGTCGGGTCTATTT
GGTTCCCCCACGTCCGCGGGGATAGGCCG	CCGATCGACGCCGTCACCGGCGCCACCATCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CACCTCACGGCCGCCCCGCGATCACGTGGTCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCCACTCGTGTGTACGGGATGCCCGTTCCAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGCTCGGTGTGCGCGGCAAGGAGGCTCGGTCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAGCGGCCCGAGTATCCGCCGGTGCTGACCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CAGTACTTTGGCCTCACCACGCCCGAGCTGCA
GGTTCCCCAGCGTCCGCGGGGATAGGCCC

>NC_011662|9|2|2519535-2520906|PILER-CR
	CCAGGCGCAGAACGCCCGGTCGGCCTCGGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGAACACGTAAGCCATGCCGCCGCACTGCTG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGCCCTGCTCCATGCTCTCGAATGCGAGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGTTGATCGTGATCGGCTCGTCGGCGTCTTG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCGAAGAAGCGCCGCCAGGCGACAAGCCCGT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCGACCTTCTCAGCGTCATACAGGCCGTCCGT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CATCGACATCATGTGGGAGGCCCCTACGGTCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	AGGGCGCGCCGTGCTCGATGATCCGGCGTCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTGCTCGAGGCCTGACATGGACAAGATCACAG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGCGCAGGCCGCGGGCGATCCACGTCGGGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGCCGGCGGTGTCGTGCTGGTGCCAGGCGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGGCGACGAAGTTCCGGTAGGTCGCGCCCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCG	CTGTCGCGGCGCTTGTCGGCCTCGTCTTCCAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCGGGAAGGGCGCGATAGATCTGCGCAGCGCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCCGCCCGCTATGACGGGCAACCGTAACACC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TTGAGTTGCTCGATCGTGGCGGCCTGAACGAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CGCGACTACTACATGCCGCTGTGCATCCTCAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TTGCCGATGATGGCGACCGTCTGCTCGAGCGA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGTTCCGTGCCGATTCGGTTGCCCCATTACC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTCCACGAAAAAATACCTATGGATTGCAATCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGTACCTGAATCGAGTTTCGTCGCCGGAGTGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAGCCCGGGCGGGGGGATTGCACTGTTTGCCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCCGTCCAGGCATAGGTCGGGCTAGTGACGCCACTGGTTCCCCCGCGTCCGCGGGGATAGGCCCTGGATCGGGTCTTCGGGCATTCCGACCTCAACGGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGTACTGGGTGATCAGATGCACGCCCCAGACG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGACAGACCGCTACCGTCCTCGCGTCGTACAA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCAGCCAGGAACAGCGCGACAGTCTGCGCCGC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GTGCGCTCCCACGGATAGAGTTGCGCCGCCCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTGAGCCGCCAGGCTGTCATCAATGACGACCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAATCTCGCCTGCCTTTCATTGAGCGCCATTC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGCGGCGTTGTAGATCGGCTGTCCCACATCCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TCGGAGGTGGCGCCCCCGTTTTGGCCTTCGGC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CATTCCGGCGTCGGATAGAACTGGTGCGACTT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	TGCTGTGTTGCGTAATTCGCCGACAGCACGCC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GCCGACGAACGTCCAAGTGTGGTCCTCACCCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAATACCAGATCCCGCGCGGTCGGGTCTATTT
GGTTCCCCCACGTCCGCGGGGATAGGCCG	CCGATCGACGCCGTCACCGGCGCCACCATCG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CACCTCACGGCCGCCCCGCGATCACGTGGTCA
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CTCCACTCGTGTGTACGGGATGCCCGTTCCAC
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGCTCGGTGTGCGCGGCAAGGAGGCTCGGTCT
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GGAGTCGCTCACGGTGTTCTCGGTGTAGGCGGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	GAGCGGCCCGAGTATCCGCCGGTGCTGACCGG
GGTTCCCCCGCGTCCGCGGGGATAGGCCC	CAGTACTTTGGCCTCACCACGCCCGAGCTGCA
GGTTCCCCAGCGTCCGCGGGGATAGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_012585437.1\|2516124_2516841_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|378050
NC_011662.2\|WP_012585436.1\|2515396_2516128_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NC_011662.2\|WP_041589850.1\|2528835_2529378_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NC_011662.2\|WP_004302146.1\|2523800_2524646_+\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NC_011662.2\|WP_004302143.1\|2522727_2523804_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237190
NC_011662.2\|WP_041589656.1\|2521834_2522071_+\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_041589657.1\|2525584_2526220_+\|arylesterase	unknown	unknown	gnl\|CDD\|238860
NC_011662.2\|WP_012585435.1\|2514210_2515395_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NC_011662.2\|WP_012585439.1\|2517699_2518011_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NC_011662.2\|WP_012585433.1\|2512064_2513645_+\|CRISPR-associated-protein-Cse1	cas8e	cls000028_cas8e_CAS-I-E	gnl\|CDD\|187800
NC_011662.2\|WP_012585438.1\|2516834_2517728_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NC_011662.2\|WP_012585443.1\|2526469_2527510_-\|selenide,-water-dikinase-SelD	unknown	unknown	gnl\|CDD\|234870
NC_011662.2\|WP_012585434.1\|2513641_2514172_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0196_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NC_011662.2\|WP_012585431.1\|2508563_2509163_-\|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl\|CDD\|377025
NC_011662.2\|WP_012585441.1\|2524896_2525601_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226647
NC_011662.2\|WP_004302141.1\|2522201_2522585_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380340
NC_011662.2\|WP_012585430.1\|2507012_2508425_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NC_011662.2\|WP_012585432.1\|2509430_2512061_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NC_011662.2\|WP_012585440.1\|2520982_2521666_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187619
NC_011662.2\|WP_012585444.1\|2527569_2528622_+\|tRNA-2-selenouridine(34)-synthase-MnmH	unknown	unknown	gnl\|CDD\|236982

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_012585437.1\|2516124_2516841_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	7.28224e-32
NC_011662.2\|WP_012585436.1\|2515396_2516128_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.27856e-50
NC_011662.2\|WP_041589850.1\|2528835_2529378_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	1.11765e-11
NC_011662.2\|WP_004302146.1\|2523800_2524646_+\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	7.08648e-95
NC_011662.2\|WP_004302143.1\|2522727_2523804_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237190	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional.	0
NC_011662.2\|WP_012585443.1\|2526469_2527510_-\|selenide,-water-dikinase-SelD	gnl\|CDD\|234870	PRK00943, PRK00943, selenide, water dikinase SelD.	0
NC_011662.2\|WP_041589657.1\|2525584_2526220_+\|arylesterase	gnl\|CDD\|238860	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.	1.66671e-92
NC_011662.2\|WP_012585435.1\|2514210_2515395_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.5389e-133
NC_011662.2\|WP_012585439.1\|2517699_2518011_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	9.93616e-32
NC_011662.2\|WP_012585433.1\|2512064_2513645_+\|CRISPR-associated-protein-Cse1	gnl\|CDD\|187800	cd09669, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	2.21004e-19
NC_011662.2\|WP_012585438.1\|2516834_2517728_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	5.25118e-105
NC_011662.2\|WP_012585434.1\|2513641_2514172_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	2.39351e-08
NC_011662.2\|WP_012585431.1\|2508563_2509163_-\|DNA-3-methyladenine-glycosylase-I	gnl\|CDD\|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	3.96653e-128
NC_011662.2\|WP_012585441.1\|2524896_2525601_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226647	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	2.45871e-108
NC_011662.2\|WP_004302141.1\|2522201_2522585_+\|cupin-domain-containing-protein	gnl\|CDD\|380340	cd02210, cupin_BLR2406-like, Bradyrhizobium japonicum BLR2406 and related proteins, cupin domain. This family includes bacterial and fungal proteins homologous to BLR2406, a Bradyrhizobium japonicum protein of unknown function with a cupin beta barrel domain. Proteins in this subfamily appear to align closest to RmlC carbohydrate epimerase which is involved in dTDP-L-rhamnose production, and belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.42502e-45
NC_011662.2\|WP_012585430.1\|2507012_2508425_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	6.14583e-138
NC_011662.2\|WP_012585432.1\|2509430_2512061_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	2.27215e-74
NC_011662.2\|WP_012585440.1\|2520982_2521666_-\|SDR-family-oxidoreductase	gnl\|CDD\|187619	cd05361, haloalcohol_DH_SDR_c-like, haloalcohol dehalogenase, classical (c) SDRs. Dehalogenases cleave carbon-halogen bonds. Haloalcohol dehalogenase show low sequence similarity to short-chain dehydrogenases/reductases (SDRs). Like the SDRs, haloalcohol dehalogenases have a conserved catalytic triad (Ser-Tyr-Lys/Arg), and form a Rossmann fold. However, the normal classical SDR NAD(P)-binding motif (TGXXGXG) and NAD-binding function is replaced with a halide binding site, allowing the enzyme to catalyze a dehalogenation reaction. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.71539e-40
NC_011662.2\|WP_012585444.1\|2527569_2528622_+\|tRNA-2-selenouridine(34)-synthase-MnmH	gnl\|CDD\|236982	PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional.	1.1289e-158

>NC_011662.2|WP_012585439.1|2517699_2518011_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MPLVVIVTRDVADRFRGFLKSVMLEVAPAVYVSPRMSKGVRDRTWNVLAEWHDFEPRGSIVMVWRDNNETGGVGLAHLGEPPRELVEMDGMWVARLRRQAQSL
>NC_011662.2|WP_012585438.1|2516834_2517728_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MLKGRLGLETARIPHADRHGLLWLERGELCVVDGCLHFMAGKDSLTPYIDQIPHQAVSMILLGPGSSVTHDALRLLARHGTLMAAVGTDGVRSYTAPALLPDRSDVARRQAELWGNPRRRIAVARRMYALRLGEILPHRDLDTLRGIEGSRVKTLYRLTAERYRIPWNGRHYDRAAPEATDTPNQAINHAATAVQAAAAIAVQSLAAIPQLGFIHEDSGQSFVLDIADLFRDSITLPIAFAAARKALDGAPDTIDRLVRREAAAVFRKQSVIPTMIDKIKAVLRMEEVDAAGGDSDA
>NC_011662.2|WP_012585437.1|2516124_2516841_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MSLTLLQCHPDPHRLAAWATRFGLTAGGDDLGYALHTLLAAAFGDLAPKPFRHFGDVRGLLAYSGQGADRIHTAAQMAAPDVHAVLGLERFAARSFPTDWAAGRRLGFELRVRPVLRTKDGRERDVFLSQAEKRGVAEKELSREAVYLEWLQRELARGDAANVDRAQLDGFRLTSSLRKGSAVVGRRPAQRVTGPDALFSGELTVRDPAGFAALIARGVGRHRAFGFGMLLLRPPSEC
>NC_011662.2|WP_012585436.1|2515396_2516128_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MANHLLIRLEGPLMAFGGETIDNIGVIRDFPAQSMLTGLIANALGWRREDAGAHDRLQARVVFGARLDRAGSRMREYQTALLGMNDSGWTTGGLPEGREQSPSYRADRAGKKVLTLQRYRDHHTDAAVLVALRLEPANETPTLDAVANALQRPARPLFLGRKPCLPAAPLFAGWIDAPDVLTALRDAVPLAANARPRVMWPAGEGEMPGARQIDLCDERNWTSGVHGGWRPVCEGNLKLEERT
>NC_011662.2|WP_012585435.1|2514210_2515395_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSLPRFIQIHTLHTYPAALLNRDDAGLAKRLPYGGAIRTRISSQCLKRHWRVADDAFSLAKLGVPMATRTRYVAELIRQRLIEQGIDEARAYATAEALLEALFGEKADKKKEGVKALQTGQAVLFGNEEIAYLARRCRDITGDFSDPVALKAEVAKFLKEEKKNIEAMKLGSGLESALFGRMVTSDLLANRDASVSVAHAFTVHEAQVENDYFTVVDDFAQAEDGAGSAGIFDTELASGLYYGYVVIDVPQLVANLEGIKVEDVFTIGADKRGLAGKVVQHLLHLIATVSPGAKRGSTAPYDWAKFVLVEAGDWQPRSLAAAFHDPIPLKGDSSIRGRAASKLAKEIAAFDAAYGMPTARRFLSLDELAVPAAERATLSQLGEWIAQTVRDGAC
>NC_011662.2|WP_012585434.1|2513641_2514172_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNQTDTTPPASPLGRLAQVITRRQHFRGDANALDTGEQAALARLDPEAPRPHQIGALAHALVLAGITPDDWQHTTWRRWALLAQGMALAGHDGSARLGTQLAHAAVSESRVTRLLTARGDAFSQQVPRVVRLMASRSTSPNWLEFGALILATDHDEARAETLRLRIAGSYYSTTHS
>NC_011662.2|WP_012585433.1|2512064_2513645_+|CRISPR-associated-protein-Cse1
MDRTRLNILDEPLIRVRDLGGQPQRLTLPQLLVALGRDAVRDYPALRPHQRHPWHALLVQLAALALHAADEDCPWDEATDWRAALLALTPNHPDGCAFCLVAPHDRPAFLQPPVPSGKLDGWKYIATPDALDMLVTSKNHDLKSERMRHAEADDWLFALASLQTQEGFLGKGNYGISRMNGGFSSRPALGVAPAGGVGVRWRRDIGALLTERDDITETIGFQRDGGMALLWIPPWDGTKSLAFTALDPFYIEICRRIRFVLDSDGRLKAHGIGTSVARVDAAARKGVTGDAWTPVEEDKALTLGADGFNYGLAAELAWGSKYRKTLAQALRAEDGIAGISLLAQGVVRGQGKTEGYHERRIPLTKKAIGYLRGGQTDLPAAIAAARVKAVATMRGSILRTALFYLLEAGTEKIDFDRRTAKQQIEAFIRAFERTEDARFFEDLNREIETEDRNAERLAWMLGLAERAEVVLKGAFTIGPQSGERRYRARSRALSYFHGALRSGKHPELVALAQHLRSHQAAEEAAL
>NC_011662.2|WP_012585432.1|2509430_2512061_+|CRISPR-associated-helicase/endonuclease-Cas3
MRHNLSEAFAFGKLDRSEDAIKWHPLVDHLADVAAVFEALCACRAIRRSIEAVAGRSLDHRDFARLAALAFLHDLGKANAGFQAKRWLNEERPRGRLTAGHSAEAIALLEASNHSDEAEALLLHLPILEICGWGKPETLDNLLRASIAHHGRPIANAPDWFNARIHWSRQGEYDPAEQLKSIGAALQRFVPEAFVEGGLPLPDTPRFAHYFAGLVQLADWLGSDTRFFPFTNVGDRDRIGNSRELASTAVREIGLDPEPCRKRFEQASPDFGDVFDTTTPYPAQSAMSDPALGQVVVLEAETGSGKTEAALWRYLHLFARGAVDGLYFALPTRVAASQAYRRVREALSRAWPEGAPLAVRALAGYAAADGETARALPDFKVLWSDDPSDAEAGRRWAGESSKRFLAAPVAVGTVDQALLGTLQVKHAHLRHALTARSLLVIDEVHASDAYMAVLIEQLINAQIALGGHTLLLSATLGAAARTRYLAAGNRKAQHLPSLAQASGLPYPAISDAWGIRSTSGAPREKRVAWQCEDAIDDPQRVAALALEAAEQGARVLVIRNTVPAAVATLAALEAATPNVTWLFNRDGVITLHHSRFSREDRLMLDATVEAQLGKGRSSGPLIVVGTQTLEQSLDLDADFLITDLCPMDVLLQRIGRLHRHMRPVEARPNAFREARVLVLTPEGGDLTPCLTRPRHGLGRFHDGGGVYADTRILEATRKLIHSESQVRIPADNRRLVESATHPEALHAIESLDTAWATHGQQIDGDTGARRTSAKLGLLPLDTAFVELGFPDEVKLATRLGAADRLLTFDSPLQGPFGRTVRELPIRHHLLPRALPLEALPDEIVVEHGGFRFRLADTHYRYSRIGLEKLPQTAASE
>NC_011662.2|WP_012585431.1|2508563_2509163_-|DNA-3-methyladenine-glycosylase-I
MSERCAWCGTDPLYVAYHDTEWGVPNHDDRHLFEMLVLEGAQAGLSWITILRKREHYRRAFDGFDAERVARYGEADLARLLADAGIVRNRLKIESAVANARATLAAQERFGSLDALLWRFAEGSAPTAPPRSLAEIPAQTAASQAMSRELKRLGFRFVGPTVCYAFMQAVGMVNDHVEGCFRQRDIAALRCATSPPPSP
>NC_011662.2|WP_012585430.1|2507012_2508425_-|PLP-dependent-aminotransferase-family-protein
MSLYQDFADRTAQRIAEGVLRPGDKLLSVRQACKTHGISPITVTQAYHLLESRGLIEARPKSGYFVRARLGSRLPEPEMTHPAGGSTALEVSDFIFQILDSVRDPAIVPLGSSFPDARLYPLDKLGRFLAAAARHLDPLATVTDLPPGNDELRRQLALRYLAHGASVSPQEIVVTSGAMEGLNLCLQALTRPGDLIAVESPTFYAGLQASERLGLEVIEIPSHPREGVSLDALADALRHHPIKACLFMLNFANPTGSRVPDDNKRALVELLHQHQVPLIEDDVYAELYFGPEAPRCSKAMDTEGLVLHVSSFSKCLAPGYRLGWVAAGRYAKEVQRQKYSTSLATAVPMQIALADYLKHGGFDNHLRHLRRQLARQEAQLLAGIEEHFPPGIRLARPDGGYFLWLELPPRIDTLRLHEEALAQGVSIAPGPIFSAKREFSNYLRLNFGHPATTRQDDALATLGRLIKRQL
>NC_011662.2|WP_012585440.1|2520982_2521666_-|SDR-family-oxidoreductase
MHANSLSGRRVLVTQADAFMGPALCEAFRAAGAEVVPDQSALLERGAGRAVIEAAGRIDVLVLNLAIPAPSTPVHQVSDGEWETTFAALVHPMREMVAAVLPQMIERKAGKILLMGSAAALRGMALRSSYAAARGAQLAYIQAVGVEAAAHGVQVNAIAQNFVENPTYFPPEVQATPAFKDRLKWQVPLGRLVTADEDASFAVYLCSEAANCFVGQVFPVCGGWVNR
>NC_011662.2|WP_041589656.1|2521834_2522071_+|hypothetical-protein
MTQAHAAATISTHRHRFDLALVVTTLCEVERLLLDAGFSLRSWAQTLARPLAENGHIEPARPGRGEGAFVVVDAVRPS
>NC_011662.2|WP_004302141.1|2522201_2522585_+|cupin-domain-containing-protein
MKQVQAIRPDREVLTRQRLPYFIGISGQTVGASGLSMHLVTIPPGARSEPHVHVGYETGIYVLEGRVLTRWGAKLENEVISAAGEFLFVPAGVPHEAINLSATEAARAVVARNHPAEQDQVQPYVAG
>NC_011662.2|WP_004302143.1|2522727_2523804_+|3-deoxy-7-phosphoheptulonate-synthase
MPTQTENLNVLAFDHMPSPDEVKARVPLTERAAAAVVAGRKAVMDILDRKDPRVFVVVGPCSIHDPVAGLDYARRLKALADEVSDVLLLVMRVYFEKPRTSTGWKGYINDPFMDDSFRIDVGMERARKFLLDVCELGLPTATEALDPIAPQYYGDLIAWTAIGARTSESQTHREMASGLSTPVGFKNATDGDLEVAINAIISAGSPHSFLGINSQGQSAVTRTRGNRYGHVVLRGGGGRPNYDTVSVSLAEQALAKAKLAKNIVVDCSHANSWKKPEYQPLVMKDVMHQIREGNQSIVGLMIESNIEAGNQPIPADLSQLKYGCSVTDACVDWATTEDMIRKSAAVLRDVLPKRERRA
>NC_011662.2|WP_004302146.1|2523800_2524646_+|phosphoserine-phosphatase-SerB
MNLVVLAEDVDSVALKNVAKVSEASAIEQITTRSFRLVGAKPVEGLVAACAAGGLDHVWLPEGRQLRDFGLFVTDMDSTLINIECIDEIADMQGFKREVAAITEAAMQGEIDFRESLTRRVALLAGLPESALAEVFDHRLQLNPGAERLLQGLQRAGIRTMLVSGGFTYFTERLKSRLGFDYAWANQLEVYDGKLTGKVLGDIVDGEAKAAHLEQARDELGLRPEQVIAAGDGANDIPMLRAAGFGVAFHAKPVLRDVAHCCLDHTGLDGILDLFGPGGES
>NC_011662.2|WP_012585441.1|2524896_2525601_-|ABC-transporter-ATP-binding-protein
MKRNGIELSNPVIEVDDLCKQVALADGQGELRILQDIGFAVGAGESVAIVGASGSGKSTLLGLLAGLDVPAHGTVRVQGRDLFALDEDARAALRGEAIGFVFQSFQLLPALTALENVMLPLELAGVDDARAIATQWLQRVGLGSRLTHYPKHLSGGEQQRVALARAFAPDPRVLLADEPTGNLDAETGRAIIELMFALNREQGTTLILVTHDESLARRCGRVLRMDSGRLSEAP
>NC_011662.2|WP_041589657.1|2525584_2526220_+|arylesterase
MPLRFIIPFAFMFLFGAVARADTILVWGDSLSAGYGLERGQEWPTLLQTRLQAEGFRHVVVNASVSGETSSGGLTRLPAALAEHAPTLVILELGANDGLRGLKPQLLADNLAAMIDAADAAGARVLLIGMRMPPNYGPAYTQRFAEVFANVAAEKKVPLVPFLMDGFADRPELFLPDGIHPAAEAQPRIVDTVWAGLRPLLAAKETKAARK
>NC_011662.2|WP_012585443.1|2526469_2527510_-|selenide,-water-dikinase-SelD
MNEIRLTEFSHGGGCGCKIAPAVLAELLATMPAGLVPPELLVGTDTADDAAVYKLNDRQAIVATTDFFTPIVDNPRDFGRIAATNALSDVYAMGAQPILALAIVGMPLDKLPPAVIGEILKGGAEVCRDAGIPVAGGHSIDVLEPIYGLVGLGVVDPARVRTNAGAKAGDVLILTKPLGIGILSAGLKKGRLSADGYAQMIRWTTTLNRVGARLADLDGVHAVTDVTGFGLAGHLLEMCRGASLTGAVRFDALPVIEEARALVRDGVATGASTRNWASYGASVELPVDAPEWQRKLVTDPQTSGGLLIACAPEAVEAVQAAVRAEQGEAGTIVGEMKAGAARVVVG
>NC_011662.2|WP_012585444.1|2527569_2528622_+|tRNA-2-selenouridine(34)-synthase-MnmH
MQKGVATVAQLSGFDEIIDARTPAEFAEDHIPGAINLPVLDNDERIVVGTIYKQQSAFDARRLGGALVAANISRHMLATLQDKPKNWRPLIYCWRGGQRSGSFTTWLRMVGWDACQLEGGYKAFRHLVIAEIERIVPTLALRIVCGPTGSAKTRVLEALAAQGAQVLDLEDLAAHKGSVLGALPDRPQPAQKRFETLLWDRLRRLDPARPVYVEAESRKIGLVFVPEALILAMRRAPCILIDATRAARLEFLVRDYAYLGDDVGALQDKLHRLREHQSRETLERWKSLAAAHALPELFAELIDQHYDPLYHRSQNHNYVHYADALRVESADLSAAGVRALAGRILAEAAE
>NC_011662.2|WP_041589850.1|2528835_2529378_-|methyltransferase-domain-containing-protein
MHGAGGAPSDWVRRFTALLADGARVLDFAAGGGRHARWLAARGCSVTAVDRDAAALATLDGVAGIATRVLELEGTDWPLGGERFDAVVVANYLYRPRLAELFELVRPGGVLIYETFMLGNERFGKPSNPDFLLRPRELLDCLPEGWSVVAFEQGEIERPAMIQRLCATRGASPGRLAQSV

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Crispr_ID: NC_011662_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_10

2658963-2659061

Orphan

Consensus_repeat	Method
GCAGCAGCTCGCGGTCGGCGCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011662_10

>merge|NC_011662|10|2658963-2659061|CRISPRCasFinder
GCAGCAGCTCGCGGTCGGCGCGCGCGTGCTCGCCGATGCGGTCGGTCTGGCGCGCGAGCCCGTCGTGCAGGTCGAGCAGCAGCTCGCGGTGGCGCGCGG

>NC_011662|10|10|2658963-2659061|CRISPRCasFinder
GCAGCAGCTCGCGGTCGGCGCGCG	CGTGCTCGCCGATGCGGTCGGTCTGGCGCGCGAGCCCGTCGTGCAGGTCGA
GCAGCAGCTCGCGGTGGCGCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_004321819.1\|2657494_2657779_-\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012585502.1\|2654123_2654951_-\|creatininase-family-protein	unknown	unknown	gnl\|CDD\|376872
NC_011662.2\|WP_012585511.1\|2671695_2672469_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213186
NC_011662.2\|WP_004306170.1\|2670577_2671699_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236896
NC_011662.2\|WP_012585508.1\|2666229_2667147_+\|histone-deacetylase	unknown	unknown	gnl\|CDD\|212519
NC_011662.2\|WP_012585503.1\|2655085_2656810_+\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012585499.1\|2649880_2650861_+\|flippase-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|377103
NC_011662.2\|WP_004321811.1\|2661761_2662934_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349916
NC_011662.2\|WP_144312161.1\|2651183_2651696_-\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012585505.1\|2659228_2661751_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|225669
NC_011662.2\|WP_041589660.1\|2651963_2652734_-\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|224896
NC_011662.2\|WP_012585498.1\|2648930_2649884_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NC_011662.2\|WP_049766910.1\|2647803_2648901_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NC_011662.2\|WP_004306175.1\|2667312_2668155_+\|DUF429-domain-containing-protein	unknown	unknown	unknown
NC_011662.2\|WP_012585509.1\|2668378_2669494_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380565
NC_011662.2\|WP_082047726.1\|2650835_2651165_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NC_011662.2\|WP_012585501.1\|2652933_2654091_+\|GTP-cyclohydrolase-II-RibA	unknown	unknown	gnl\|CDD\|238348
NC_011662.2\|WP_012585510.1\|2669631_2670564_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223633
NC_011662.2\|WP_144312162.1\|2664859_2665681_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|365959
NC_011662.2\|WP_187283050.1\|2663370_2664804_+\|ATP-dependent-RNA-helicase-DbpA	unknown	unknown	gnl\|CDD\|236977

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_012585498.1\|2648930_2649884_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.83129e-07
NC_011662.2\|WP_012585511.1\|2671695_2672469_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213186	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system. The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).	1.30379e-118
NC_011662.2\|WP_012585499.1\|2649880_2650861_+\|flippase-like-domain-containing-protein	gnl\|CDD\|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	8.09019e-19
NC_011662.2\|WP_004321811.1\|2661761_2662934_-\|amidohydrolase	gnl\|CDD\|349916	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NC_011662.2\|WP_012585502.1\|2654123_2654951_-\|creatininase-family-protein	gnl\|CDD\|376872	pfam02633, Creatininase, Creatinine amidohydrolase. Creatinine amidohydrolase (EC:3.5.2.10), or creatininase, catalyzes the hydrolysis of creatinine to creatine.	3.13047e-66
NC_011662.2\|WP_012585505.1\|2659228_2661751_-\|FtsX-like-permease-family-protein	gnl\|CDD\|225669	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NC_011662.2\|WP_041589660.1\|2651963_2652734_-\|dihydrofolate-reductase-family-protein	gnl\|CDD\|224896	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism].	9.77525e-42
NC_011662.2\|WP_012585508.1\|2666229_2667147_+\|histone-deacetylase	gnl\|CDD\|212519	cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11. Class IV histone deacetylases (HDAC11; EC 3.5.1.98) are predicted Zn-dependent enzymes. This class includes animal HDAC11, plant HDA2 and related bacterial deacetylases. Enzymes in this subfamily participate in regulation of a number of different processes through protein modification (deacetylation). They catalyze hydrolysis of N(6)-acetyl-lysine of histones (or other proteins) to yield a deacetylated proteins. Histone deacetylases often act as members of large multi-protein complexes such as mSin3A or SMRT/N-CoR. Human HDAC11 does not associate with them but can interact with HDAC6 in vivo. It has been suggested that HDAC11 and HDAC6 may use non-histone proteins as their substrates and play a role other than to directly modulate chromatin structure. In normal tissues, expression of HDAC11 is limited to kidney, heart, brain, skeletal muscle and testis, suggesting that its function might be tissue-specific. In mammals, HDAC11 proteins are known to be involved in progression of various tumors. HDAC11 plays an essential role in regulating OX40 ligand (OX40L) expression in Hodgkin lymphoma (HL); selective inhibition of HDAC11 expression significantly up-regulates OX40L and induces apoptosis in HL cell lines. Thus, inhibition of HDAC11 could be a therapeutic drug option for antitumor immune response in HL patients.	1.44415e-143
NC_011662.2\|WP_049766910.1\|2647803_2648901_+\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	6.02367e-41
NC_011662.2\|WP_004306170.1\|2670577_2671699_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|236896	PRK11301, livM, leucine/isoleucine/valine transporter permease subunit; Provisional.	2.14563e-102
NC_011662.2\|WP_012585509.1\|2668378_2669494_+\|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380565	cd06342, PBP1_ABC_LIVBP-like, type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type 1 periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.	1.40177e-149
NC_011662.2\|WP_082047726.1\|2650835_2651165_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	2.45156e-17
NC_011662.2\|WP_012585501.1\|2652933_2654091_+\|GTP-cyclohydrolase-II-RibA	gnl\|CDD\|238348	cd00641, GTP_cyclohydro2, GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (FAPy), an activity that has otherwise been reported for unrelated GTP cyclohydrolases III.	3.76588e-88
NC_011662.2\|WP_012585510.1\|2669631_2670564_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|223633	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].	1.30814e-77
NC_011662.2\|WP_144312162.1\|2664859_2665681_-\|DnaJ-domain-containing-protein	gnl\|CDD\|365959	pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.	5.62023e-05
NC_011662.2\|WP_187283050.1\|2663370_2664804_+\|ATP-dependent-RNA-helicase-DbpA	gnl\|CDD\|236977	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.	0

>NC_011662.2|WP_004321819.1|2657494_2657779_-|hypothetical-protein
MSDFPLPILFIMAVFFTMWLILRKFHRIEQRKRALPELNAYLYANNQTEPRCSACESTEFKDEGLSHGKDERRIVSCAKCDTLLYRIVPPERAE
>NC_011662.2|WP_012585503.1|2655085_2656810_+|hypothetical-protein
MSARARDLVLGTLLPLLALDALLVFDNAWPTLWPRPTPAVSIELAFAVAALVLFAAWRKHAAHGLVRVLAGLATLWIVLRYVQVTVPALFGRPLNLYWDLPHLGAVLDMGGDGPGAKVLLALALGILVVLVLHRVVSACVRALARSAAAPGARALLGGVAGAAILLWALAPWPGPLAASAFARPVAALVSDQIRFLHSALAADGGERLGPGPDFRGDLAALRGADVLIVFAEAYGAVSFDRPPITAALADARTELGAAIAASGREAVSARVVSPTFGGASWLAHAAVLAGVDTRDPADHALLLTTDRPTLVRHFATHGYRTVGWMPGLQRPWPEGRFYGFDRIADADSAGYAGLPFGFWRIPDQASMARIHVDELGGSFGEAVGTQQARSSPGSSRASAGDTSASAPTSRPGARAETAAARRAPRLVVFATVSTHAPFAAIPPLREDWSRLLRADAFSQEEVEAAAAVRVSWTEPLPAYLASMRYQLGWLADYLAHHAARELVLIVIGDHQPIGTVSGPDQPHDVPVHVIASDPALLTRFAAAGFVAGLTPPQQPLGPMHELAQVLVDAFSGPR
>NC_011662.2|WP_012585502.1|2654123_2654951_-|creatininase-family-protein
MNAKPALPWWQDLTPSRIAGLARADAVALLPLAAIEQHGEHLPLSTDLDIALGLLEAVVPKLRAGLPLCVLPPVAVGCSLEHTGFAGTLALDAKTALASVVQIGACVARAGLRRLVLFNTHGGNKALVDLAALELRAAQRMLVVRAHSFRFPPPPAALPADELRDGLHGGALETALMMHLAPHKVRRDAVDRFESLGVRMAAAGRLLGPEGEAGFAWMAQDLHPSGACGDPRLADAALGARLVEHFASRLARIVEEAHDFDLEALVTRAPAPEQR
>NC_011662.2|WP_012585501.1|2652933_2654091_+|GTP-cyclohydrolase-II-RibA
MRQAERALFDLRRGLSILVRDHARAFVVCAVEGLDDAAAGEMQMLAGSPARLVLSDHRLAAIGRAGAAQAVSVGLSPLPDAAGLHALAWQRGASLPADAELRDGGPVERAALRLLGRAQRVPAALVCEVAPDRAAAVAATVASGDLLAVDAAEAMRLCESGPGRLARISEARVPLAEAENSRFVLFREADGVHEHVAIVIGERANWPEDVPVRLHSSCLTGDLFGSLRCDCGEQLRRGVAAIDALGGGVLLYLSQEGRGIGLANKLRAYGLQDEGLDTIDADQVIGFSKDERDFRIAHEMLDELGIDRILLLTNNPSKVAALQKAGIHVVGRRAIYGEVTVQNQRYLRTKASRHGHWLNDLLNEQGEPGDDEPACLPAADAAHRA
>NC_011662.2|WP_041589660.1|2651963_2652734_-|dihydrofolate-reductase-family-protein
MAIEIAPRGAWRCARALRADTAELLDLFLPWVARPGRLAIAQLGQSLDGRIATASGASHYINCLEARTHLHRLRALVDAVVVGVGTVNADDPQLTVRHVAGRNPVRVVLDPRGRARADARLFQDGAAPTVHLVGEDLAPGTAAVLPGRVARAGLPGAGSGFEPGAVLDWLARAGCRRVLVEGGGHTVSRFVQAGAIERLHLLVAPLLIGSGRAGLVLPPIDTLDEALRPVCRPFRCGSDSLFDLDFDGAGRAAQQR
>NC_011662.2|WP_144312161.1|2651183_2651696_-|hypothetical-protein
MHDLPRAREAGARPASVQRLDLCRLVADVVPDEAPPNPAEQYEALVLVRGHAFLRSSEAAIELEPGQILLGTGASPELLYSADSELWSVLVPESVLREACSECGWLHAGEGVRFNRCPCTRDELDHLVTLLRLVASESASGALRAQLFMHYAHAVANKLLFTLQHNQPTS
>NC_011662.2|WP_082047726.1|2650835_2651165_-|helix-turn-helix-transcriptional-regulator
MFERLERHIEARIKQDISVEQLAQFAGLSQRSLYQVLKDQARMSPRTYIRRKKLEHVYATLMDPAVRVASVTAVALDYGFTHLGRFAELYKSSFGILPSESLKARPPGK
>NC_011662.2|WP_012585499.1|2649880_2650861_+|flippase-like-domain-containing-protein
MSGEARRTRRPLPVLRALASLGLLAGVLWWIEPRALIAAFGAPAPAWLALALAIGVLQTALSAWRWQLTAGRLGAPLGFAHALREYYLASFLNQILPGGVMGDAARAWRHASLPGTARDAAWQAVVIERGAGQLALLLVVVASVLAAPALQVVPGRLGDAVDLRGLPWMGVLAVLALVATALAGSTRTALRSLASATRQALLGRAVLLRQLLASLLIVASYVAVWLCCMRMSGLATPPAQAAALVPWVLLAMAIPLSVAGWGIREGAAALVWQAAGLDAAEGVAASVSYGVVVLLSTLPGALALRRHEPGARSTAEATPTCRADGP
>NC_011662.2|WP_012585498.1|2648930_2649884_+|class-I-SAM-dependent-methyltransferase
MPTHPDAAAPRHPDACFDADWLALRAAADRAARAPRLEALAAAWLQGRRRRHPQAPLRLMDLGCGSGANARHLAPRLPGPQQWTLVDHDAGLLERARTLGADLRDAQGAKPQVHTRCRDLGTLAAPALADTDLVCASAVLDLMPASWLVRLADACTSTGCALLITQSVDGTWRFLTHGSAEPPVPDDAFVRDAFNAHQRRDKGLGAALGPDAAPALAELLAARGFDVETAASPWRLDLAAPPQAALACALIDGWRDAATAQCPHAAARIAAWHARRSAQCAARGKEVLEVGHLDLFASPPVATPAALRPDGPAARAR
>NC_011662.2|WP_049766910.1|2647803_2648901_+|glycosyltransferase
MGELRGRAVSAHRGSADLDFIVPGDPAQRTGGYLYDARIVEALRHLGWTVTVHGLPGRFPDADPTARDALHDTLATLPAGRRVVIDGLALGGLPEVAIEHAGRLALVALVHHPLADERGLDPVLRRCLLASERAALAAVRLAITTSAFTARRLLDFGLRAERIRWVEPGVAPLALAAAEGEPPQLLCVASLTPRKGQDVLVRALERVRALPWRCTLIGSTHRDPGYAGEVAELVRSLGLQDRIRLSGECADAALRDAYAAADLFVLPSHYEGYGMVVAEAIAAGLPVLATTGGALAGTLPPGAGLAVPPGDVDALAGALGELIGDRARRLRLRDGARRARAGLRGWPQAGEAFAAALAELAPASA
>NC_011662.2|WP_012585505.1|2659228_2661751_-|FtsX-like-permease-family-protein
MMRTLRLALRMMLRDLRAGELHLLGLAIMIAVASLTSVGFLADRVGRALDREANQLLGGDLLLRADKPWPDAFIDEARSRGLQTARTVLFTSMASTAEGAALGGVKVVEDGYPLRGTIRLAPGPNQADAPAGRAPEAGEVWLDERLFAELGVNTGDKVGLGELEFRVGAMVSFEADRGANFFSLLPRAIFNLKDLEATGLIAEGSRATWRLHVAGAPQAVEAYEKWARANLGRGQRVETVDNARPEVRAALDQAQRFLRLAALLAVILAAVAVGLSARRFMARHLDGCAVMRVLGARQAQVLGIVVGEFLLFGLAAALAGTALGWAVQWGLAGGLRELLATDLPAPSPLPLAHGMVVGMALLAGFVLPQLLRLGKVSTLRVLRREFEFAEPVSGAAWALGLAALLGLIFWIAADARLGAMVAAGFAVALGVFALAAWGVLRLAGRLKGQGSLRGGGWRYGIAALGRRMGSSVIQAAALGLGMTALLLLTLVRADLLDNWRRMAPPDAPNRFVINIQPDQRAGIAALFAAEGLPVPPIQPMIRGRMVAIEGKPVDPSAYEDERTRRLAEREFNLSYGAELPPGNVVEAGRWHGAAAQPQFSAQFSAQFSVEAGLAKTFGLAVGDRVAFEIGGRRVEAPITSVRKLDWDSMRVNFFFIASPGVLEDFPATLITSFHLPPARHDFTTKLVGEFPNLTVIDTAAVIAQVQSMTDKLIVIVQFVFGFAVLAGLVVLYAALQSTHDERDYELAMLRTLGARNRQVRQALFAEFLVLGGVAGVLAGVGASAIGWVLAEQVFRMPYVPALAPVLVGVVLGAAGVVAGGWLGTRALLSRPPLASLRALG
>NC_011662.2|WP_004321811.1|2661761_2662934_-|amidohydrolase
MSLIESVRPLQSKLTAIRRDIHAHPELAFEERRTAELVARHLEALGIETHRGIGGTGVVGVVRGRRGLRAIGLRADMDALPITERNEFAHKSTIQGCMHACGHDGHTTMLLGAAEALAARRDFDGTVYLIFQPAEEGEGGAPAMIADGLFERFPMEAVFGMHNWPGMEAGSFAVHAGPVMASADRFDIRFTGVGAHAAMPHLGVDPVVAGAAFVQAAQTLVSRVLDPIDAGVVSVTQFHAGEAYNVIPDRAELCGTVRTFSAEVRDRLERGLRQVAEGIAQSHGVQVDFEFRRGYPPTVNTVAEATLCAEAARAVAGPERVFTDRRPSMGAEDFAYFLQEKPGAYVWVGNGPGEGGCMLHNPNYDFNDEVLPAGVAYWCALVQRLLGGVK
>NC_011662.2|WP_187283050.1|2663370_2664804_+|ATP-dependent-RNA-helicase-DbpA
MLASPPDAPPGSPPPATPGLPFDGLPLSPAMLDTLRQLDYRAMTPIQAASLPLALAGHDLIAQAKTGSGKTAAFALPLLARLDVRKLAVQAMVLCPTRELADQVTQEIRRLARFEANIKVLALCGGTPMRPQRDSLEHGAHVVVGTPGRIMDHLERGSLVLEALNTLVLDEADRMLDMGFHDDIAFVASRCPSERQTLLFSATYPEGIARLAARFLREPQEVKLLEQHAHGKIRQRFYEVAHPARLEAVATLLRHFRPVSTLAFCNTRQQCRDLVELLRARGFAALALNGEMEQRERDQVLIQFANRSCSVLVATDVAARGLDIARLEAVINVDVTPDPEIHIHRIGRTGRGDEEGWALNLCSSADKRRVASIAQRMGFEPEWHALDELVEDANEPLQAPMTTLLILGGRKDKIRPADVLGALTGEAGFTREQVGKITVTDQTTYVAVERAIAREAVRRLSAGTLKGKKVKVRALEV
>NC_011662.2|WP_144312162.1|2664859_2665681_-|DnaJ-domain-containing-protein
MPERRDPLGAESAPDEHVEPAAIVAAPDPDAERLLARCARLQAQMLDFTGRLADMEQQVRSYEQQQFLALGDVVGECLRLRREYLDLKAERSGAAADREQARQAEADFDAYRRSTAHTPVPRPELDDDEQDELRRLYRAAAMRCHPDRAEEAERAEAHDVFLRVQAAYQARDLAGLRAITAELAGWARKRDDASPVQGSAAPASSAVRRRVAELQTRVADLILAVQTLQLDPAYRRAVQVERWETHFAEARAGFEAECESLREQIAGLASRRS
>NC_011662.2|WP_012585508.1|2666229_2667147_+|histone-deacetylase
MKLYYADHFVLPLPAGHRFPMEKYSRLRARLRDSGLFADDDLRVPAAASDAEILRAHDAGYLQRVAGGTLDAAEVRRIGFPWSAAMVERSRRSAGATLAACRSALDREGGAACAANLAGGTHHAHRDFGSGFCVFNDAAIAALAMRAEGRAGRIAIVDCDVHQGDGTATILADTPEVFTCSLHGAKNFPFRKQASDLDVELPDDTGDEAYLAALDAALDTVFTRGRPELVIYLAGADPYAGDRLGRLALSIDGLRRRDERVLGRCRAADVPVAVAMAGGYAQPIDDTVTIHFNTLCTAARVANAR
>NC_011662.2|WP_004306175.1|2667312_2668155_+|DUF429-domain-containing-protein
MTTRLYGVDFTSSPRRAKPITVAHGHLDGARVELVRFEHCVDWPGFEALLARPGPWLGAFDFPFGLPREAIADLDWPQTWPALVRHCATLGKPAFRAALDAYRESRPVGRRYAHRATDLPARSHSPLKLVNPPVGLMFLEGAPRLLAAGVRVPGMHDGDPSRVAIEAYPGLLARRITPASYKSDERRKQNAERHAARKQIIDTLTVGPVSSQGASRPLVLAATREQHQAMLDDASGDLLDAALALLQAAAAARLGPPHFGLPAGMDPLEGWIAGCGTSNA
>NC_011662.2|WP_012585509.1|2668378_2669494_+|branched-chain-amino-acid-ABC-transporter-substrate-binding-protein
MKRTVVAVALMSIGLSAAQAQEVVVKLGGAAPLTGNQSHLGKDLENGTRLAIEEANAKGVTIGGKKVKFELVGEDDQADPRTGTTVAQRLVDAGVKGVIGHLNSGTSIPASRIYDQAGIPQVSPASTNPKLTLQNFSGVFRTIANDVQQGTGLGKYATGALGAKRVAIIDDRTAYGQGLADETAKAVKETGGEVVAREFTTDKATDFNAILTKIRATNPEVVFYGGMDAQAGPMVRQMKQLGITAKFLTGDGGCSPEMIKLAGDGMSSSAYCSMPGLPLEKMPGGADFRERYKKRFNADVQVYAPYAYDAAMAIITAMQKADSVEPSKYLPELKKSNFPGVIGNVSFDANGDIKEGAVTIYNFKDGAWVPL
>NC_011662.2|WP_012585510.1|2669631_2670564_+|branched-chain-amino-acid-ABC-transporter-permease
METLIQQFINGLVIGSVYALIALGYTMVYGILGLINFAHGDVLMVGALVALQTMLFLMGMAPGMSPLVMLAIALAVAMVICMLLGFTMERLAYRRLRNAPRLAPLITAIGVSFLLQTLAMIIWGRNYHTFPQLISTTPLQPIPGVFVTPVQIAIVVVSALLMVGLLLLVNRTRIGRAMRATAENHRVASLMGVDTNAVIALTFVIGAALAAVAGVMFASNYGIAHYGMGFMPGLKAFTAAVLGGIGNLGGAMLGGVVLGLVESFGAGYIEHLTFGFLNSSYQDIFAFIILGLVLIFRPTGLLGERVSDRA
>NC_011662.2|WP_004306170.1|2670577_2671699_+|ABC-transporter-ATP-binding-protein
MNELVAAVPWLGKRNPTAARWLIILVAIAAPFIAWQFGRSWVRILDFALLYMMLALGLNLVVGFAGLLDLGYIAFYAVGAYTFAFLASPHFDVHLPFWVILPLGAAFAALAGVMLGFPVLRLRGDYLAIVTLGFGEIVRIFMLNLNYPVNITNGPQGINMIDPINLFGWDLSRNIRIGEDFTIHSLFLYYYFFLAAVVASIIFIQRLQISRIGRAWAAMRDDELAAKAIGINTRDMKLLAFALGATFGGVAGALFGAFQGFVSPESFSLMESIAVLTMVVFGGMGNLAGAVVGAFVLALLPELLRDVAVPLQQTLFGHVLLDPEVLRMLLLSLAMILMMLLRPAGMIPARARYCHDHHLSHHLNNTPKREAAK
>NC_011662.2|WP_012585511.1|2671695_2672469_+|ABC-transporter-ATP-binding-protein
MITLLEARNIGKRFGGLQALSDVSLTIRKGEVYGLIGPNGAGKTTFFNVLTGAYTPDGGEFVFNGSELPSGKPHKVVGRGIARTFQNIRLFRDLTALENVMAGHHIRTRAGIWGVLTQNRFTREEERLTTERAYELLRYVGIERFADVVSKNLSYGDQRRLEIARALATEPQLLALDEPAAGMNATETGQLKQLIQQIRNDGITVMLIEHDVKLVMGLCDRVAVLDFGSKIAEDVPAVVQKDEAVIAAYLGGGKHAN

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Crispr_ID: NC_011662_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_11

3694324-3694594

Orphan

Consensus_repeat	Method
CGCAGCCTTCTTCGCACGCTTGCCGCGCGCCTTGGGCGCGACAGGCTCCGCGGCG	PILER-CR

2 spacers

The CRISPR arrays of NC_011662_11

>merge|NC_011662|11|3694324-3694594|PILER-CR
CGCAGCCTTCTTCGCACGCTTGCCGCGCGCCTTGGGCGCGACAGGTTCCGCGGCGGCGGGCACAGGCTCGATCGCCGGCGCAGCCACGACCTCGGCCACCTGCCCGGCGACCACCTTCTTCGCGCGCTTGCCGCGCGCCTTGGGCGTCGCCGACGCCTCGGCAGCAGTCACAGACTCGCCCACCGGTGCGACGAGCACCTCCGCGACCACTTCGGGCGCAGCCTTCTTCGCCCGCTTGCCGCGCGCCTTGGGCGCGGCGGGCTCCGCTGCG

>NC_011662|11|3|3694324-3694594|PILER-CR
CGCAGCCTTCTTCGCACGCTTGCCGCGCGCCTTGGGCGCGACAGGTTCCGCGGCG	GCGGGCACAGGCTCGATCGCCGGCGCAGCCACGACCTCGGCCACCTGCCCGGCGACCA
CCTTCTTCGCGCGCTTGCCGCGCGCCTTGGGCGTCGCCGACGCCTCGGCAGCAGT	CACAGACTCGCCCACCGGTGCGACGAGCACCTCCGCGACCACTTCGGGCGCAGCCTTCTTCGCCCGCTTG
CCGCGCGCCTTGGGCGCGGCGGGCTCCGCTGCG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_012585935.1\|3705933_3707076_-\|outer-membrane-protein-assembly-factor-BamB	unknown	unknown	gnl\|CDD\|274511
NC_011662.2\|WP_004322291.1\|3701712_3703014_-\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|259802
NC_011662.2\|WP_012585932.1\|3700638_3700824_-\|DUF2065-domain-containing-protein	unknown	unknown	gnl\|CDD\|378266
NC_011662.2\|WP_041589689.1\|3677922_3679107_-\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_012585929.1\|3690444_3692589_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|237425
NC_011662.2\|WP_004298373.1\|3680468_3681593_+\|peptidoglycan--binding-protein	unknown	unknown	gnl\|CDD\|181619
NC_011662.2\|WP_004325955.1\|3693347_3694103_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|183021
NC_011662.2\|WP_004325957.1\|3692585_3693314_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NC_011662.2\|WP_004322293.1\|3700831_3701713_-\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NC_011662.2\|WP_004298374.1\|3679385_3680465_+\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_004298368.1\|3689886_3690216_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225209
NC_011662.2\|WP_004322299.1\|3698158_3699469_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NC_011662.2\|WP_004322287.1\|3704240_3704477_-\|RNA-chaperone-Hfq	unknown	unknown	gnl\|CDD\|179001
NC_011662.2\|WP_012585933.1\|3703028_3704186_-\|GTPase-HflX	unknown	unknown	gnl\|CDD\|274455
NC_011662.2\|WP_012585928.1\|3686907_3689886_-\|NB-ARC-domain-containing-protein	unknown	unknown	gnl\|CDD\|366375
NC_011662.2\|WP_004298371.1\|3682200_3685467_-\|cobalamin-B12-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|239650
NC_011662.2\|WP_012585931.1\|3699473_3700631_-\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|237098
NC_011662.2\|WP_012585934.1\|3704591_3705920_-\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NC_011662.2\|WP_012585936.1\|3707079_3707724_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|370767
NC_011662.2\|WP_004298372.1\|3681632_3682043_-\|DUF2721-domain-containing-protein	unknown	unknown	gnl\|CDD\|378544

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_004322291.1\|3701712_3703014_-\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|259802	cd03404, SPFH_HflK, High frequency of lysogenization K (HflK) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflK (High frequency of lysogenization K). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another SPFH superfamily member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	2.7778e-137
NC_011662.2\|WP_012585934.1\|3704591_3705920_-\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NC_011662.2\|WP_012585932.1\|3700638_3700824_-\|DUF2065-domain-containing-protein	gnl\|CDD\|378266	pfam09838, DUF2065, Uncharacterized protein conserved in bacteria (DUF2065). This domain, found in various prokaryotic proteins, has no known function.	2.15382e-10
NC_011662.2\|WP_012585929.1\|3690444_3692589_+\|PAS-domain-containing-protein	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.26799e-107
NC_011662.2\|WP_004298373.1\|3680468_3681593_+\|peptidoglycan--binding-protein	gnl\|CDD\|181619	PRK09039, PRK09039, peptidoglycan -binding protein.	1.59411e-128
NC_011662.2\|WP_012585931.1\|3699473_3700631_-\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|237098	PRK12421, PRK12421, ATP phosphoribosyltransferase regulatory subunit; Provisional.	0
NC_011662.2\|WP_004325957.1\|3692585_3693314_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.43408e-72
NC_011662.2\|WP_004325955.1\|3693347_3694103_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|183021	PRK11181, PRK11181, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB.	2.37375e-109
NC_011662.2\|WP_012585935.1\|3705933_3707076_-\|outer-membrane-protein-assembly-factor-BamB	gnl\|CDD\|274511	TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. [Protein fate, Protein and peptide secretion and trafficking].	3.68489e-134
NC_011662.2\|WP_004298368.1\|3689886_3690216_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	9.78307e-13
NC_011662.2\|WP_004322299.1\|3698158_3699469_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NC_011662.2\|WP_004322287.1\|3704240_3704477_-\|RNA-chaperone-Hfq	gnl\|CDD\|179001	PRK00395, hfq, RNA-binding protein Hfq; Provisional.	7.04211e-46
NC_011662.2\|WP_012585933.1\|3703028_3704186_-\|GTPase-HflX	gnl\|CDD\|274455	TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). [Unknown function, General].	0
NC_011662.2\|WP_012585928.1\|3686907_3689886_-\|NB-ARC-domain-containing-protein	gnl\|CDD\|366375	pfam00931, NB-ARC, NB-ARC domain.	1.64822e-24
NC_011662.2\|WP_004298371.1\|3682200_3685467_-\|cobalamin-B12-binding-domain-containing-protein	gnl\|CDD\|239650	cd03678, MM_CoA_mutase_1, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, unknown subfamily 1; composed of uncharacterized bacterial proteins containing a C-terminal MCM domain. MCM catalyzes the isomerization of methylmalonyl-CoA to succinyl-CoA. The reaction proceeds via radical intermediates beginning with a substrate-induced homolytic cleavage of the Co-C bond of coenzyme B12 to produce cob(II)alamin and the deoxyadenosyl radical. MCM plays an important role in the conversion of propionyl-CoA to succinyl-CoA during the degradation of propionate for the Krebs cycle. In some bacteria, MCM is involved in the reverse metabolic reaction, the rearrangement of succinyl-CoA to methylmalonyl-CoA. Members of this subfamily also contain an N-terminal coenzyme B12 binding domain followed by a domain similar to the E. coli ArgK membrane ATPase.	0
NC_011662.2\|WP_004322293.1\|3700831_3701713_-\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	1.02341e-131
NC_011662.2\|WP_012585936.1\|3707079_3707724_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|370767	pfam09976, TPR_21, Tetratricopeptide repeat-like domain. This family resembles a single unit of a TPR repeat.	1.60985e-60
NC_011662.2\|WP_004298372.1\|3681632_3682043_-\|DUF2721-domain-containing-protein	gnl\|CDD\|378544	pfam11026, DUF2721, Protein of unknown function (DUF2721). This family is conserved in bacteria. The function is not known.	1.57304e-30

>NC_011662.2|WP_004325955.1|3693347_3694103_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MAKAPENTPTRLIYGFHAVSAKLRHAPDSVLEIFLTADRKDARVRKFLAQAESAGVRITQSEGDKLDALVGTRRHQGVVAKVDATRREIKLADVLDSLDENALILVLDGVQDPHNLGACLRVADAAGAHAVVAPKDRAVGLNATAVKVASGAADTVPYITVTNLARALREMQDAGVWVVGAAGEAEKTLYGVDQKVPVAWVLGAEGDGLRRLTRETCDELARIPMHGSVESLNVSVASGICLFEARRQRGS
>NC_011662.2|WP_004325957.1|3692585_3693314_+|response-regulator-transcription-factor
MTQSPIDPSQARIFVLEDDPEVARLICMSLAEYGFRCEQMRAGRQLLERARQLTPDLCIVDLGLPDMDGMQVVRELQDGSPCAVLILTGRNDVTDRVLGLELGADDYIVKPFEPRELVARVRSILRRYQRSASADSAGERSTARFAGWTFDANRHALLAPDGREVPLSAAEAGLLATLLRRPNKILSREQLLGERDVDPFDRSIDVRISRLRRKLDDDPQNPRLIKTVYGAGYLFAVQVEWV
>NC_011662.2|WP_012585929.1|3690444_3692589_+|PAS-domain-containing-protein
MARSPSPQAEPAAFTPEQLRRHDLLLAGLDLLDQAIAVFDTTPKLVTWNKALVRLLDFPEALVRVGTPFEAFVRFNAERGEYGEGDIETLVAKRMAAARAFLPHYVERARPNGTVLAVRGVPIPNLGFVSLWTDITEQRRYEALIQQQNAQLEARVRERTAELEQANSEIDQIAGALRRSEHRLQLIIDSIPALIAYVDGGEIYRFANRGYAEWFGYPKDEIVGRSIREVVGEDAYAQIRSQVERARTGERVCYEYSRVGTDGRTLHARSVVVPEIGTDGRTVVGFFVMTTDITEQKANQAALVQAQKMEAVGQLTGGLAHDFNNLLTIIIGNLSALQQRIGAGPGAEFVDPSLQAARRGAELIRRLLTFSRRQSLAPTAVEVGALVHNMTHLLARTLGETIRIHLRLPGEPVHALVDPHQLENAILNLAINARDAMPVGGELTIGVSRRQLDEALAGVVEVAAGDYVQIDVGDTGKGIEPAVLQRVFEPFFTTKDFGSGSGLGLSMVYGFVRQSGGNIRILSTPGRGTHVRFVLPTAAAAVTAPERAAPATARARALDGPVLLVEDEPEVRKVVRMQLTSLGHVVIEAADGVEALGLLQNVDDIALLVSDTVMPGGIGGRELARRARTLRPQLPILLVTGYASEATPTDELPADVPTLRKPFDQAALAGALAALLGPEPGAAAGVEDASPTAPAADGEARSRIMNTTTEPRPQ
>NC_011662.2|WP_004298368.1|3689886_3690216_-|antibiotic-biosynthesis-monooxygenase
MVVIVFRTRLRAGVDEAELEGVGARMFQVAASMPGYVSYKDFAADDGEFVSIVEFDSLETLAAWRDHPEHREIQARGRSRYFSDYRVQVCTTVREYAFTLDGGRVEGAL
>NC_011662.2|WP_012585928.1|3686907_3689886_-|NB-ARC-domain-containing-protein
MPAPPENLRVFVASPGDVAAERKLALEVINGMQRRWFARGKVTLDTVEWDDDLAQVPMAASATPEDSVIDYLGRPRDCELTVVILWSRIGTRLPNSFRRDDGSAFESGTVWELEDARDRGRDVWVYRCTRPLEISGDDLKAQRVDEKLAQYRAVEAYFVRAFQNPDGSLKGGVNTFDTPTSFGKALGEHLEAFITRRIDALRGASPRAPAGGAGAGAKPWLVREPVRDYHVVGRAELVDRVWRKLRDGVDTSLLFLPGVGKTTVAQELLRERDKILGHFDGVLWANLGRQHVDSAELRAWGEALGIPAERMNSFDDKELWLRALQDAIGDRCMLVVLDDVWRTEDARRFMELGPRCVFLSTTRSKTVAKELGAGELVPELDPPQAFGLLCEVAPGAVEADPMAAKALLGTLQGLPLAIVLVGKVLRRAASEAHADPARLRRAYDEVAQAGRRLGLLRPEDQRTLGEVIELSFGALRSDAARDAATALSIFRPKPNAFGRDIALAVGEADEQTLEDIGDIGLIEQVGKDVFTMHRIIAEYARTRLPLQCSQALHRKALAFYAEKLRGSIESDPDAYLSWYRHEWAEWQETKDACLYHTAHSGDSVAGVLAFLRVFFDAFWWWGYYQRFPFCERLVVEWRQRELDARARALIDQVAAFQDAYPAGPDKRAGGDWVRAESALLGIRKALGLDGDGRHITGEDARRVRAFTDFFLAEARAYGRDERDEALRFYEAARSLFLDDGVSWVAAWIEFYVAQYLLERGEFADARPHALRSLAEGAGEFGERAPLAGRDSELIANDYRLLGDLALAADEVDAAARAHGRATLYAYVFQAIPEPVDTYTMDFYGEIVGRVAASIARCGSGDQRGRALALALHAFWRPWRTHCGIGDERDELNAALDAGDPGRLAAALFPPAPAVDAFDFIDQAASYSRAVLAVVPSFVHELGPLDEFMAEVVRTLAGGVGADGTALAGHAPLYRIDARKGRLQLCLGRTEFA
>NC_011662.2|WP_004298371.1|3682200_3685467_-|cobalamin-B12-binding-domain-containing-protein
MTDLSVAHKLSPYKPKNKVRFVTAAALFDGHDASINIMRRILQSTGSEVIHLGHNRSVGEIVNAALQEDVQGIAITSYQGGHVEFFKYMIDLLRANGGENIKVFGGGGGVIVPAEIKELHEYGVTHIFSPEDGAKMGLQGMINSVVERCDVDVAKAAPQKADAVLKALAAGDRRALAQIITALENGGYGDEVKKALIEAAAKTKVPTLGITGTGGAGKSSLTDELVRRFRLDQDDKLKLAIVSIDPSRKRTGGALLGDRIRMNAIEHANIYMRSLATRDTGSEVSAALPEVIAACKLAGFDLVIVETSGIGQGNAAIVPFVDLSLYVMTPEFGAASQLEKIDMLDFADFVAINKFDRKGALDALRDVAKQYQRNRELFNQRPEEMPVFGTMAARFNDDGVTALYQAVLPALVGKGLKVAKSKLPVVKVRASSEGRAIVPADRTRYLAEIADTVRGYHKHIEQQARVARERQSLKIAKGLFEQCGKDAGSFAELIDWKDGELTPAAKKLLDMWPKTRELYAADEYVVKIRDKEIRTQLTSTSLSGSKIRKVALPNFEDAGETLKFLMKENVPGSFPYTAGVFAFKREGEDPTRMFAGEGDAFRTNRRFKKVSEGMPAHRLSTAFDSVTLYGCDPDLRPDIYGKIGNSGVSIATLDDMKVLYDGFDLCCPTTSVSMTINGPAPIILAFFFNTALDQQVTKFKADNGREPTEDELQKIKEWTLSTVRGTVQADILKEDQGQNTCIFSTEFALKMMGDIQEYFVHHDVKNFYSVSISGYHIAEAGANPISQLAFTLSNGFTYVESYLARGMHIDDFAPNLSFFFSNGMDPEYSVIGRVARRIWAVAMKNKYGANERSQKLKYHVQTSGRSLHAQEMDFNDIRTTLQALIAIYDNCNSLHTNAYDEAITTPTEESVRRAMAIQLIINREWGLAKNENPNQGAFIIEELTDLVEEAVLKEFEAIASRGGVLGAMETGYQRGKIQEESLYYEHKKHDGSYPIIGVNTFLNPKGQAQQEIELARSTEEEKQGQLKRLADFHARNKDQAPKWQAKLQQAVIDNTNVFEVLVDAVRYCSLGQITEALYKVGGQYRRSM
>NC_011662.2|WP_004298372.1|3681632_3682043_-|DUF2721-domain-containing-protein
MNLTTPALLFPAISLLLLAYTNRFLTLAQVIRQLNASPDRGAALVQCQLPGLKRRITLTQYMQGFGVLSFLLCALSMLALFLEAEVAGKWMFGTSIVTLAVSLVLSLVEVLLSTEALSLVVRDLEQAKREGGTPCS
>NC_011662.2|WP_004298373.1|3680468_3681593_+|peptidoglycan--binding-protein
MARLARRRPLDFWPGFVDALASLLMVMVFVILIFVIGQFVLADAVSGRDRALAQLEAELATLARTLSLEQSARQRAEAEVGELSASLSAARRESEARGNELLAARDELHAAQDEARSRREEATRIVADIEALQRLKTELEAEAARLASALDTSERGLKEHKEMSAAAIAQVELLNRQLAAVREQLEQLNAALDAAKLAAKDKDLKLEELGRELNLALAGRVKELARYRSEFFGRLQEVLGKRKDVQIVGDRFVFSSEVLFASASDEVSADGMVQLTRLAETLKTLSADMPKDLPWVLQVDGHTDRRPIATARFPSNWELSTARALAIVKFLRGQGIPPERLAATGYGEFHPLDARSTEEAYTRNRRIELKLTSR
>NC_011662.2|WP_004298374.1|3679385_3680465_+|hypothetical-protein
MERKDFTRPVHVTTWMAVFLALVAALAAALVPQLKHAFIANAAFNGVILFVLAVGIAVNLRQVWRLQREVLWIEEFQHSAGGGSATGLQPVLLAPMARVLSNRRRGQAHLSPASTRSILDGVQIRLEEQRDLSRYLIGLLIFLGLLGTFWGLLATIRSIGEIIGSLSVGSDPVAMFEALKAKLDAPLGGMATSFSTSLFGLAGSLVVGFLDLQSGHAQNRFYNELEDWLSHMTKLPSGVGAEGEGNVPAYVQALLEQTAEGIERMQRSAAESERERRATAEHLGELNAQLTRLADLIGRESRDLSTLSTTQDELRALLRQLAQQPAQGAQFTEDLRAELRLLSRTIGAALGGAAGSKAD
>NC_011662.2|WP_041589689.1|3677922_3679107_-|hypothetical-protein
MQADAPRWSASGFGTLGAAWHDEDDTQFRRSVDQHRGTRANELDFGVDSSLGLQVHGALTPQWSVMAQAVMNQGRHGEWGPHLVWGFVKHVPSDWLELRAGRLVTDIYLDGDSRHVGYAYTPVRPYADVYGRLTYDNFDGLDATLQHALGDGLLRFKLFGGRTRGSVFLNGMEHPVPIGRSFGVTLDWIGPELSLKLSWGNMVSTRNAIYRELPFTLRHLASLAPGTEFAGQAVARASEIAGSNRIGYLGAALGWERGPFSLQLMATDMSMSVYPRFEGWGAGATAAYRVGRWKPYLTGSRSILDPVDRALDVPPALDPAGQLRGFWQTVHGYTRHDQTTIGVGVRYDFADNMALKLQFDRIDAKRSSALLDDRGFVTGPRSPTVFSATLDFVF
>NC_011662.2|WP_004322299.1|3698158_3699469_-|adenylosuccinate-synthase
MAKNVVVVGTQWGDEGKGKIVDWLTDHAKGVVRFQGGHNAGHTLVVGKTEYKLNLVPSGIVREGVACFIGNGVVLDAHHLLSEIRTLEAGGIKVRDRLRVSPGCPLILGYHAALDRAREAAKSAGDKIGTTGKGIGPTYEDKVARRALRVYDLFDRERFAAKLKANLEYHNFVLTRHLGAEPVDFQTVFDQAMADADELLPMVADVSAELYAINKSGGSLLFEGAQGTLLDIDHGTYPFVTSSNCVAGQAAAGSGVGPGRLHYVLGITKAYCTRVGGGPFPTELDIETKGVPGEQMSTKGREFGTVTGRKRRCGWLDLAALKRSIIINGVTGLCITKLDVLDGLEELKLCTGYMLDGRRIDLLPMGSEEVTRCEPIYETLKGWSGTTFGAQSWDALPQEARTYLHRIEEICEIPIDVISTGPERDETILRRHPFGA
>NC_011662.2|WP_012585931.1|3699473_3700631_-|ATP-phosphoribosyltransferase-regulatory-subunit
MRWVLPDHIQDALPSDAHRLESLRRRLLDAFRLRGYQLVMPPLLEYLDSLTTGAGKDLELRTFKLVDQLSGRSMGVRADMTPQVTRIDAHLLNRRGVSRLCYCGSVLHTLPSTLTGTREPLQLGAELYGHAGIEADVEILRLLAEVLRLAEVPASRIDIGHVGLFHALAARAGLVPGREEELFDLLQAKDVPELRRMLADVSEPARSALLALPELYGGPEVLAEAAARLPQDAEIAGPLAELRQLADALGDLPVSFDLADLRGYHYHSGVVFAAYGAESPAALALGGRYDRVGQAFGRARPATGFSLDLRELAWHLPIPAAPAGAVLAPPDDDAGLASEVSALRARGEIVMVALPGHEGTWNEAGCDRQLVKRGDRWAVVPLQGE
>NC_011662.2|WP_012585932.1|3700638_3700824_-|DUF2065-domain-containing-protein
MASSLLTAFALMLIVEGLLPFIAPAAWRETFLRLASMADGQIRFIGLSSMLAGLAMLFIVL
>NC_011662.2|WP_004322293.1|3700831_3701713_-|protease-modulator-HflC
MRDKMSLIGGTLLLLVVIASMSLFTVDQRQYAIVFQLGEVKEVISEPGLNAKLPFIQNVRYFDKRILTMDTPEPERFITSEKKNVLVDHFVKWRIVDPRLYYESVAGDEARARTRLTQTVNAGLREEFGRRTVHDVVSGERDRIMEQMRERADRDARTIGVQIVDVRLKRVDLPNEVSESVYRRMEAERKRVANELRSLGAAEAERIRADADRQREVIIAEAYRSAQEVKGAGDAKATAIYAEAFGKDREFYSFYRSLEAYRASFSGKDDVLVVDPSSDFFRFMKDAGGAPRN
>NC_011662.2|WP_004322291.1|3701712_3703014_-|FtsH-protease-activity-modulator-HflK
MSLNDPRWGGQGGGDREDGNRGDDNRNDDQRGDRNRGGNQGPPDLEEVWRDFNQRLSGMFGGKRPGRGGGFGGGNGGGNRPELPGFSFKQFRGGFGVLAALVLVVWLASGLYTVDANQRAVVLRLGEYVATTEPGLRWRLPAPFETHEIVDLTGVRTVEVGYRGSERNKVLRESLMLTDDENIINIQFAVQYVLNSPENYIFNNRFPDEAVAQAAETAMREIVGKSRMDFVLYEGREEIATTAHELMQRILDRYETGIQVSRVTMQNAQPPEQVQAAFDDAVKAGQDRERQKNEGEAYANDVVPRARGTASRLVEEANAYRERVVANAEGEASRFSQVFAEYNRAPEVTRERLYLDTMQQVMSSTSKVMVDAKGNGNLLMLPLDKLMQQTGAKPAAAAPPDSQSAAGLAANAPVPSFDPRNRDGMFSRERGVR
>NC_011662.2|WP_012585933.1|3703028_3704186_-|GTPase-HflX
MFERPASGERAVLVQLDLGQGAIDERLSELKLLVLSAGASVEAVVQGRRAAPDSKLFAGSGKVQEIGEALRAYGADIVIFNHALSPGQQRNLERELRCMVIDRTALILDIFAQRARSHEGKLQVELAQLEHLATRLVRGWTHLERQKGGIGLRGPGEKQLETDRRLLGNRVKMLKSRLAQIEKQRKVRRRARERRDVLSVSLVGYTNAGKSTLFNALTKAGAYAADQLFATLDTTSRRLYVGGEGAGASVVLSDTVGFIRDLPHALVAAFQATLEETAQADLLLHVVDSASEDRDAQIGAVNQVLAEIGAADVPQILVWNKIDLTRAAAAVERGDCGTIRRIFLSARTGEGLDLLRDALAEVARQTFGDNADRPAGRDDERRQET
>NC_011662.2|WP_004322287.1|3704240_3704477_-|RNA-chaperone-Hfq
MSNKGQLLQDPFLNTLRREHIPVSIYLVNGIKLQGQIESFDQYVVLLKNTVTQMVYKHAISTVVPARPVVIQQEEGAN
>NC_011662.2|WP_012585934.1|3704591_3705920_-|ribosome-biogenesis-GTPase-Der
MKPTIVLVGRPNVGKSTLFNRLTRTRDALVADQPGLTRDRHYGIGRVGDRDYLVVDTAGFDPVAKDGIMHEMARQAEQAIAEADVLLFLVDGRAGRTPHDENIAARLRRAGRPVHVVVNKAEGIDRAMVAADFHALGLGDPLPVSAAHGDGVKQLVELVLAPFPADDEKEHSDDEGPKVAIVGRPNVGKSTLVNTLLGEERVIAFDMPGTTRDAISIPFERGGKRYTLIDTAGLRRRGKVFEAVEKFSVIKTLQAVQECNVVVLVLDAAQDISDQDAHIAGFALEAGRALVVAINKWDAVDDYRRDRLKADIARKLAFLSFARFHQISALKAEGIAGLLKSVDAAYAAATANLATPRLTRALQQAVARQAPPRHGLARPKMRYAHQGGMNPPVIVIHGNALDDIPQSYVRYLERCFMDAFDLKGTPLRIQFRTTHNPYATRT
>NC_011662.2|WP_012585935.1|3705933_3707076_-|outer-membrane-protein-assembly-factor-BamB
MKTPSLRLVPLLVAALLAAGCSSLNPFASSAPKPAPLVDFKPGAQLVAKWQANIGEAEHYRFQPAVWSDSVYAAGNEGEVARFEDGRTVWRIDTGGELSSGVGTDGRLAVVVATDGTVIALDTDNGSERWRAPIGAEVLAPPAVSLELVIVRASDNRLIALSARDGSRRWVYQRNNPPLALRSFAGVVLEGPVVLAGFPGGKLAVINAANGGAITELNVAVPRGATELERVADVAGMPVVGRREVCAVAYQGRAACFDTSNGNAIWSREFSSSVGMDRDARFALITDDRDAVHALDAASGASVWKQDALARRHVSRPLIVGDYVIVGDLEGYVHALSRETGAFAARERAGSDPIVADPVPLRRGFVVQGAGGDITAYEVR
>NC_011662.2|WP_012585936.1|3707079_3707724_-|tetratricopeptide-repeat-protein
MAVYDLEEQEQISELKAWWAQYGNFVVTLAVVAALASVGWQAWNWYQSRNAGEAGALYYAVQQAVEKNEPQKAREAAGRLVSEHGGSVGAQLGALLSAAMQFESGDLANARAQLEWAADKGSDPALRELARLRLAAVLLQAGELDAALARLQSAPSAAYKARFDDLRGDVLAAQGKVAEARAAYQAAIDALAAVGDDAVTLREVVRVKLESLGA

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Crispr_ID: NC_011662_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_12

3822819-3822915

Orphan

Consensus_repeat	Method
GATCGCGACTTGCGTCGCTCCTACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011662_12

>merge|NC_011662|12|3822819-3822915|CRISPRCasFinder
GATCGCGACTTGCGTCGCTCCTACGGGAAACATCGGCTCTCCGGCAGGGCGGTGCTGATTCTGGCGCTGCGATCGCGACTTGCGTCGCTCCTGCGGG

>NC_011662|12|11|3822819-3822915|CRISPRCasFinder
GATCGCGACTTGCGTCGCTCCTACGGG	AAACATCGGCTCTCCGGCAGGGCGGTGCTGATTCTGGCGCTGC
GATCGCGACTTGCGTCGCTCCTGCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_004314658.1\|3831244_3831889_-\|DUF3299-domain-containing-protein	unknown	unknown	gnl\|CDD\|378700
NC_011662.2\|WP_004314668.1\|3821661_3822705_-\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	unknown	unknown	gnl\|CDD\|236515
NC_011662.2\|WP_004314659.1\|3830230_3831013_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|180424
NC_011662.2\|WP_004314669.1\|3820113_3821646_-\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NC_011662.2\|WP_012585969.1\|3811493_3812189_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NC_011662.2\|WP_012585970.1\|3812185_3813394_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NC_011662.2\|WP_004327454.1\|3813399_3814599_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NC_011662.2\|WP_187283009.1\|3816994_3817849_+\|neutral-zinc-metallopeptidase	unknown	unknown	gnl\|CDD\|282131
NC_011662.2\|WP_012585968.1\|3810010_3811159_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NC_011662.2\|WP_012585978.1\|3833992_3834565_-\|DUF2796-domain-containing-protein	unknown	unknown	gnl\|CDD\|378529
NC_011662.2\|WP_049766945.1\|3814731_3816051_-\|lysine-2,3-aminomutase	unknown	unknown	gnl\|CDD\|224426
NC_011662.2\|WP_004314660.1\|3829742_3830051_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|377315
NC_011662.2\|WP_012585973.1\|3826353_3827652_-\|HlyC/CorC-family-transporter	unknown	unknown	gnl\|CDD\|224173
NC_011662.2\|WP_012585976.1\|3831966_3833262_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NC_011662.2\|WP_004314673.1\|3818101_3820090_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	unknown	unknown	gnl\|CDD\|227111
NC_011662.2\|WP_004314661.1\|3828063_3829743_-\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NC_011662.2\|WP_187283008.1\|3816375_3816810_+\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_187283010.1\|3833258_3833996_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NC_011662.2\|WP_004314663.1\|3825495_3826167_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NC_011662.2\|WP_004314665.1\|3822919_3825085_-\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_004314658.1\|3831244_3831889_-\|DUF3299-domain-containing-protein	gnl\|CDD\|378700	pfam11736, DUF3299, Protein of unknown function (DUF3299). This is a family of bacterial proteins of unknown function.	8.80355e-61
NC_011662.2\|WP_004314668.1\|3821661_3822705_-\|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB	gnl\|CDD\|236515	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB.	0
NC_011662.2\|WP_004314659.1\|3830230_3831013_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|180424	PRK06144, PRK06144, enoyl-CoA hydratase; Provisional.	5.7115e-65
NC_011662.2\|WP_004314669.1\|3820113_3821646_-\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NC_011662.2\|WP_012585969.1\|3811493_3812189_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.77865e-107
NC_011662.2\|WP_012585970.1\|3812185_3813394_+\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	1.52342e-52
NC_011662.2\|WP_004327454.1\|3813399_3814599_+\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	8.13619e-52
NC_011662.2\|WP_187283009.1\|3816994_3817849_+\|neutral-zinc-metallopeptidase	gnl\|CDD\|282131	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase. Members of this family have a predicted zinc binding motif characteristic of neutral zinc metallopeptidases (Prosite:PDOC00129).	7.34006e-139
NC_011662.2\|WP_012585968.1\|3810010_3811159_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.06619e-42
NC_011662.2\|WP_049766945.1\|3814731_3816051_-\|lysine-2,3-aminomutase	gnl\|CDD\|224426	COG1509, KamA, Lysine 2,3-aminomutase [Amino acid transport and metabolism].	2.38768e-52
NC_011662.2\|WP_004314660.1\|3829742_3830051_-\|DUF485-domain-containing-protein	gnl\|CDD\|377315	pfam04341, DUF485, Protein of unknown function, DUF485. This family includes several putative integral membrane proteins.	1.01311e-29
NC_011662.2\|WP_012585973.1\|3826353_3827652_-\|HlyC/CorC-family-transporter	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	9.68474e-127
NC_011662.2\|WP_012585978.1\|3833992_3834565_-\|DUF2796-domain-containing-protein	gnl\|CDD\|378529	pfam10986, DUF2796, Protein of unknown function (DUF2796). This bacterial family of proteins has no known function.	3.95728e-56
NC_011662.2\|WP_004314673.1\|3818101_3820090_-\|acetyl-CoA-carboxylase-biotin-carboxylase-subunit	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NC_011662.2\|WP_012585976.1\|3831966_3833262_-\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.06476e-13
NC_011662.2\|WP_004314661.1\|3828063_3829743_-\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NC_011662.2\|WP_187283010.1\|3833258_3833996_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	3.39717e-74
NC_011662.2\|WP_004314663.1\|3825495_3826167_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	6.97807e-52
NC_011662.2\|WP_004314665.1\|3822919_3825085_-\|methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0

>NC_011662.2|WP_004314668.1|3821661_3822705_-|methylmalonyl-Co-A-mutase-associated-GTPase-MeaB
MPAPISTPLDPADQSLVAGVLARQLRPLAKAITLIESQREDHQARAQKVLEALLPHTGGAMRVGISGVPGVGKSTFIEALGLYLIEQGLRVAVLAVDPSSSVTGGSILGDKTRMELLSQNPAAFIRPSPSACSLGGVAEKTRETMLVCEASGFDVIIVETVGVGQSETAVAGMTDIFCLLQLPNAGDDLQAIKKGIMEIADLIVINKADIDAGAAMRAKAQIKTALHMLRPASPNWTVPVLTLSALQKQGIADFWKAVCDYREALGASGEFAAKRRHQALAWMWEMIDSGLRSRFRSHPRVREELPALARAVEEGDTTPAAAAFRLLGHLQSNEQGRLPRQPAETEI
>NC_011662.2|WP_004314669.1|3820113_3821646_-|acyl-CoA-carboxylase-subunit-beta
MQDIIRQLEKKRELARLGGGQKRIDAQHRKGKLTARERIELLLDDDSFEEWDMYKEHRCTEFGMDAEHIPGDGVVTGYGTVNGRLVFVFSQDFTVFGGSLSETHAEKICKVMDHAMKVGAPVIGLNDSGGARIQEGVDSLGGYADVFQRNVLASGVIPQISLIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPEVVKTVTHEEVTAEELGGAVTHNTKSGVADLAFENDVEALMMTRRLIGFLPSSNREKPPAIPCADSADRIDLSLDTLVPENPNQPYDMKELIFKMVDDGDFFELQPDYAKNIIIGLARMEGSPVGIVANQPLVLAGCLDIKSSIKAARFVRFCDAFNIPVVTLVDVPGFMPGTAQEYGGIIKHGAKLLYAYAECTVPKVTLITRKAYGGAYDVMSSKHLRGDVNLAWPSAEIAVMGAKGAVEIIFREEKGDPEKLAQREAEYKARFANPFVAASRGFIDDVVMPHNTRKRICRSLAMLRDKQLDNPWRKHGNIPL
>NC_011662.2|WP_004314673.1|3818101_3820090_-|acetyl-CoA-carboxylase-biotin-carboxylase-subunit
MFKKILIANRGEITCRVIKTARKMGIKTVAVYSEADKNALHVELADEAVCIGPAASKESYLVMDKIIAACKQTGAEAVHPGYGFLSENAEFSRRLEEEGIKFIGPKHYSVAKMGDKIESKKLAIAAGVNTIPGYNDAISGPDEAVEIAKKIGYPVMIKASAGGGGKGLRVAFNDKEAHEGFASCVNEARNAFGDDRVFIEKYVLEPRHIEIQVLGDSHGNYVYLNERDCSIQRRHQKVIEEAPSPFVDPAMRKAMGEQAVALARAVNYESAGTVEFVVSGATKEFYFLEMNTRLQVEHPVTELITGLDLVEQMIRVAYGEKLPLAQADVKIDGWAMECRINAEDPFRGFLPSTGRLIKFQPPAEGNGVRVDTGVYEGGEISMFYDSMIAKLIVHGKDRQDAIERMRDALNGFVIRGISSNIPFQAALLQHPRFCSGHFNTGFIAEEYPKGFDASMVPHDDPALLAAVATFARMRYIERAVQIEGQLAGHGRKVASEWVVVMGGKQYAMRTAAIEGGLAVTCEGRTYNIVSDWKFGELLFAGTVNGAPIGLQIERRGLRYRISHFGLQVEPVVMTVRAAHLLSLMPAKLPPDLSKFLLSPMPGLLREIAVTEGQDVKAGEKLAIIEAMKMENVLKAEQDGKVKKIVAKPGASLSVDEVIIEFE
>NC_011662.2|WP_187283009.1|3816994_3817849_+|neutral-zinc-metallopeptidase
MDFRNGRESDNVEDRRGQGGRGLRGGGKIGIGTIVLALVAMYFGIDPSVVLDTAMTDPAPVESTQTRPAAENAQARFVSMVLADTEDTWRTIFQQGGATYREPKLVLYTGATRSACGVGQAEMGPFYCPADAKVYLDLAFFDELHHRFGAPGDFAQAYVIAHEIGHHVQNLLGISDKVQQARTRVSEREANQLSVRLELQADCLAGIWAHHANRSRSVLEAGDIEEGLAAATAVGDDHIQKRSQGYAVPDSFTHGSAEQRRRWFAIGLQQGQFKSCDTFSAPRL
>NC_011662.2|WP_187283008.1|3816375_3816810_+|hypothetical-protein
MVCHKVVLCKSNKGILGGSSAAGRGARGRAGSRPPRSRLASLLRHHHSCIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGIGRCVARCPGDDPRRWP
>NC_011662.2|WP_049766945.1|3814731_3816051_-|lysine-2,3-aminomutase
MSFKVFTARDLDRIPQLARLSPEQRFEMKVVAAVLPFRVNQYVIDELIDWADVPRDPIFQLTFPQRGMLASEHYERIARLIEGDADKDALEAAIAEVRHALNPHPADQMQMNMPLDEHGKRIDGLQHKYRETVLFFPSQGQTCHAYCSFCFRWAQFVGDKELRIASSEARVLHDYLRTHTEVTDLLVTGGDPMVMKTRHLREYLEPLLRPEFDHIQTIRIGSKALTFWPHRFLGAEDADDLMRLLRQLVEAGKHVALMAHYNHWKELETDAAHAAIRRIRATGAVIRAQGPLIAHINDDPAAWARLWKTEVRLGLVPYYMFVERDTGARHYFEVPLARAWEIYQQAIQQVSGLARTARGPSMSASPGKVEIQGVTEIAGEKVFVLRFIQGRNPDWVQRPFFARFDEKATWLDQLAPAFGEAKWFWQDEYEAIRAERLVG
>NC_011662.2|WP_004327454.1|3813399_3814599_+|ABC-transporter-permease
MRWRDALHLALRAITAHRLRSLLTLLGIGVGIAAVILLTSIGEGLHRFVLAEFGQFGTNVINLHPGRQGARGGPPGLPSTARDLTLDDADALARLPHVRHVTGSVSGNAEVRAQGRVRRSTVLGVGPQMQEVYSMRVRVGQFLPPDEAASARAFVVLGPKLARELFGSTIALGEHVEIGAERFRVVGVMEEKGQFLGIDLDDAAYIPVVRGMALYQRDGLMEIALTYDPEAPAARVAEAVKKRMIARHGREDFTVLTQEDMLATLSNILDLLTAAVGALGAISLLVGGVGIVTIMSIAVTERTGEIGLLVALGARRRTILALFLGEAVVLAGIGGLLGLLVGAGLAQLVGLLVPAMPVATPWRYALAAEGVAIVVGLAAGVLPARRAARLDAVEALRAE
>NC_011662.2|WP_012585970.1|3812185_3813394_+|ABC-transporter-permease
MSPADTLRFATRAATAWPLRTALMMLAMSIGVAAVVVLTALGDGARRYVVNEFSALGASLLIVLPGRTETGGVNAGSFVSSTPRELTNADAAALLRLPLVQRVAPLAVGNSEIAVGGRLREVTVVGTSADFLELRGLKIGHGGFLPREDFNRASAVAVIGDALRSELFPGQSAVGRMIRVGDTRLRVIGVLTPSGRGLGMTTDELVLVPVATAQAMFDTSGLFRIFVEARGREALPATQRQIEERLRARRDDELDFTVITQDAVLGTFDRILGALTLGVAGIAAISLAVAGILVMNVMLVAVTQRTAEIGLLKALGARAGTIRAAFLAEAALLSVAGALAGFALGHAGAWGVRLAFPQLPAWPPDWAVIAALATALGTGVLFGVLPARRAARLDPVQALSKR
>NC_011662.2|WP_012585969.1|3811493_3812189_+|ABC-transporter-ATP-binding-protein
MAQIELEHIDRIFKLGDSEVHALRDITLRIEPGEYVAVMGPSGSGKSTLLNLLGLLDRPDAGHYRLEGRDVTTLSADEQAAVRSARIGFVFQSFHLVPRLSAAENIGLPLVLAGIPVAERAARIAQALQDFGLEGRARHRPDELSGGQRQRVAIARATIMRPAMLLADEPTGNLDRATGHEVTALLEALNAAGTTLIVVTHDPSMGERAHRRILMEDGAIRQDLRTAAPPP
>NC_011662.2|WP_012585968.1|3810010_3811159_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKTPRRLFVLALVAALVGAGIWWMTRPQPIEVAVHEVARGTVEATLTNTRAGEVEACQRAKMATIAGGRIEWLGVEEGDRVEAGQVLMRLWHGDLDARAAVVRAQLATARQRVQEACAVAANAEREAARQAQLVKRGFVSASAEERARTEARARRAACDTAQADIATAQAQLVATETERQRLVLVAPFAGTVAKISGELGEYATPSPPGVPMPPAIDLIDDSCLYVKAPMDEIDAPKIRPGLPVRITLEAIPGKVFEGRVRRVAPYITAVEKQARTVAVDVDFADPAEAHGMLVGYSTDVEIVLATRAEVLRVPTGALREGGKVLVVEGDTLVERTLRTGVANWEFTEVVSGLAAGERIVTSLEREGVMAGAKVALRPEEAR
>NC_011662.2|WP_004314665.1|3822919_3825085_-|methylmalonyl-CoA-mutase
MSKANDPVYPQPDIEAWKKAAAKQAPGGDLDKLNWITPEGLSVKPLYTKADTEGLQHADTLPGFEPFLRGPQPTMYAVKPWTIRQYAGFSTAEASNAFYRKALAAGGQGVSVAFDLATHRGYDSDHPRVTGDVGKAGVAIDSVEDMKILFDQIPLDKVSVSMTMNGAVLPILAGYIVAAEEQGVSQDKLSGTIQNDILKEFMVRNTYIYPPTPSMKIIADIFGYTAQHMPKFNSISISGYHIQEAGANQAIELAFTLADGVEYVRTGINSGMDVDTFAGRLSFFWAVGMNFYLEIAKMRAARLLWWRLMKQFNPKSAKSMMLRTHSQTSGWSLTEQDPYNNVVRTTIEAMAAVFGGTQSLHTNALDEAIALPTEFSARIARNTQIIIQEETHICNVVDPWAGSYMMEKLTQDMADKAWALIEEIESMGGMTRAVESGWAKMKVEECAADKQARIDSGKDVIVGVNKYKLAKEDPIDILDIDNHAVREAQIARLDKIRATRDTAAVQAALAALTKCAETGEGNLLDLSVKAIRLRATVGEISDALEKVFGRYRANPQAVSGVYGAVVEEQEDWKTLKADIEAFIAEEGRRPRVMIAKLGQDGHDRGAKVVASAFADLGFDIDIGPLFQTPEEAARHAVENDVHAVGCSSLAAGHKTLVPAVIDELKRLGADDIITFVGGVIPAQDYDTLYAAGAKGIFGPGTPIPAAAREVLKQIRAARKAG
>NC_011662.2|WP_004314663.1|3825495_3826167_+|GntR-family-transcriptional-regulator
MNATRIAPIALYQEVAERLRQRIFSHELPPGTWVDEQALAEHYGISRTPLREALKVLASEGLVTLKPRRGCYVTEISERDLDEVFSVMSMLEGECARLSAARATEDDLARLRAIHANLEKAAGKPDIDRFFEANQAFHLALQEIADNRWLLHVIEDLRKVIKLSRHHSLFSEGRLEQSLAEHRDILQALLDRDGARAETLMRTHILSGRAALARIAEAKTQAA
>NC_011662.2|WP_012585973.1|3826353_3827652_-|HlyC/CorC-family-transporter
MPVNELLVILLLIAASAFFSMSEISLAAARKIKLRVMAEAGHLNARRVLALQDSPGHFFTVVQIGLNAVAILGGVVGEQALSPYVTELLRRAYAGPMLDTIAFVVSFVFVTSLFVLFADLMPKRLAMVQPERIAVAVVQPMQVCMWLFAPLVWVFNGAANLIFRWFKLPSVRIEDITADDIMAMADAGAQAGALLRQEQHLISNVFELDSRIVPSAMTSRENIVFLTLSESEESIRRKIAAHPHGKFPVCEDGIDSVIGYVDSKDILPRIVQGQDLSLRTQPIVRKVLMLPDTLTLFEALERFRDAKEDFALILNEYALVVGLLSLQDVMNTVMGDLVSPFQEELIVRRDDNSWLIDGATPIEDVMQALEIEVFEGFQNYETVAGFLMYRLRKVPKRTDFVTYLGYKFEVVDIDNYRIDQVLVTRETPVGAV
>NC_011662.2|WP_004314661.1|3828063_3829743_-|cation-acetate-symporter
MNARSLSRSAAGLLALAASPLVLAAGPAMDAAEKQPLNLHAIGMFFVFVLMTLGITYWAASRTKSTADFYTAGGGITGFQNGLAIAGDYMSAATLLGLTAMMYAQGVDAYIYMLSFFVGWPIILFLMAERLRNLGKFTFADITAYRLDQGKVRTMAAVSSLTVVCFYLVAQMVGAGQLIKLLFGLDYNIALVVVGALMMVYVTFGGMVATTWVQIIKACMLLIGGTAVGVLAFSQFGFSFDELTNRAMEVHKLGQKLLNPGSLLADPVTAISLGLGLMFGTAGLPHILMRFFTVTDAKEARKSVLYASGIVAYFFNVIAIMGLCAIIIVGQNPQFFEGGVIGGKVIGGGNMIAMHLANAVGGNLLLGFLSAVAFATILAVVAGLALAGASAISHDIYSRVIMKGKADEATELRVSKFATIGLGVVAVLLGMAFEKMNIAFMVALAFGVAASANFPVLILSMYWKGLTTKGALVGGYSGLVSAVLFVLLSKSVWVDVLGNASAIFPYTQPALFSMPIAFFMTWLFSTLDKSKAAEAEKEAFEDQYVRAQTGVGAATASSH
>NC_011662.2|WP_004314660.1|3829742_3830051_-|DUF485-domain-containing-protein
MYAHIRRNPRFAELVAKRTRFAGILAAIVLIVFYGFVLLVAFAPELIGKRLFEGSNLTFGILAGLLQFIFFWVLTLVYVRRANGEFDDINKELVKAAWKEEK
>NC_011662.2|WP_004314659.1|3830230_3831013_+|enoyl-CoA-hydratase/isomerase-family-protein
MNTRIDLDIDQGIATVTLHNPTKLNAVNAAMWRGLSAAMARIAADDSVRCVIVRGAGENAFAAGGDIEEFRSVRATVDDALHYHEDLVASALNAIRDCAVPTVAAIRGACVGGGLEIAGCCDIRIAGESARFGAPINRLGFSMYPGEMAGLLALVGPAVVLEILLEGRILDAREALQKGLLTRVVDDERVFEEAAVSAERIRAGAPLVARWHKQWVRRLTTGVALDEEEKRRAFDFLATADYREGLAAFSEKRAPVFRGR
>NC_011662.2|WP_004314658.1|3831244_3831889_-|DUF3299-domain-containing-protein
MNTNLHLARLVPRALRVVPLLALLAFAPLPAGAQAPAGESAGQYAVGDRLAAPAPGKGEFREISWDDLIPADWNPEGFLSGLELDKLEDNDPRAAEALQRMREEWDRAPLVERMAGARVRIPGFVVPLETSGEKIREFLLVPYFGACVHVPPPPANQLIHVIPDKPVPGGWNMLPVWVDGVMAVGRIDSDMGTAGYQLRAVKVEEYVEEKPKRR
>NC_011662.2|WP_012585976.1|3831966_3833262_-|ABC-transporter-permease
MSPVFMLSLRSIANRRLSAALTVVAVALAVALLLGVERLRNDARAGFAQTISATDLVVGARSGPVQLLLYSVFHIGDATANLSWASIEHVAALPQVKWLVPLALGDSHRGHRVVGTTTDFFAQYRHGEGRSLVFAAGGPFAGATARVEDLFQTVIGAEVAARHGYRLGERIVLSHGGGAGEGGARFAEHADKPFTVVGILAPSATPLDRAVLVSLEGLEAIHVDWHGGAPIPGLKITPEQVRKFDLRPKSVTAALVGLHSRSAVFRVQRQINAYAGEPLTAILPGATLQQLWDLVGIAERALLAVSALVVVVGLTGMVAVVLASLGERRRELAILRALGASPREVFALLALESLLLATAGIALGLGLLYGAGAALAPWLAAQHGLQPSLGWPAAGEWRLLGAVLAASLVASLLPALRAYRQSLADGMTVRT
>NC_011662.2|WP_187283010.1|3833258_3833996_-|ATP-binding-cassette-domain-containing-protein
MSAAVRAHPTPAVRISGLRYRWPGSAQDCLAIDALQLGAGERVFLRGPSGSGKTTLLSLVGGVILPQAGTVEVGGQALGALSAGARDRFRADHVGFVFQLFNLLPWLSARDNILLACRFAPQRRARIAAAGSTPAAEAARLAARLDLGVELLERPATQLSVGQQQRVAAARALIGRPGLVVADEPTSALDADRQQTFIDLLLDECAAVGAALLFVSHDQRLAAHFDRVLDLGALVRAGLAAEDAR
>NC_011662.2|WP_012585978.1|3833992_3834565_-|DUF2796-domain-containing-protein
MPACLRPILLSSVIVLALALPVAAPAQHAHGAHQHGVAELTVVLEGRMLQLELISPLDNLVGFEHAPANETQRGALADAERLLLDSEAVFALPSEAGCVIREVGIESPWRDSGREHGRGQTRDHNRPARGDHEDMVASYGFECAHPEALRRLELRVFKHFPRLQRVRAEFATPRGQGGGVLTSGAAALAL

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Crispr_ID: NC_011662_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NC_011662_13

4175309-4175420

Orphan

Consensus_repeat	Method
CTTGCGTCGCTCCTACAGGGGCGTCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NC_011662_13

>merge|NC_011662|13|4175309-4175420|CRISPRCasFinder
CTTGCGTCGCTCCTACAGGGGCGTCGAGCCATGGCGCCTATTGCAGGAGCGACGCGAGTCGCGATCCGGGCGACTGTAGTCGCGACTTGCGTCGCTCCTACGGGGGCGTCGA

>NC_011662|13|12|4175309-4175420|CRISPRCasFinder
CTTGCGTCGCTCCTACAGGGGCGTCGA	GCCATGGCGCCTATTGCAGGAGCGACGCGAGTCGCGATCCGGGCGACTGTAGTCGCGA
CTTGCGTCGCTCCTACGGGGGCGTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NC_011662.2\|WP_012586138.1\|4174845_4175226_-\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|260132
NC_011662.2\|WP_012586133.1\|4166571_4167690_-\|ISAs1-family-transposase	unknown	unknown	gnl\|CDD\|379382
NC_011662.2\|WP_041589703.1\|4175457_4176687_-\|LPS-biosynthesis-protein	unknown	unknown	gnl\|CDD\|225747
NC_011662.2\|WP_012586132.1\|4164915_4165899_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|366154
NC_011662.2\|WP_004357889.1\|4172311_4173673_-\|IS1380-family-transposase	unknown	unknown	gnl\|CDD\|379340
NC_011662.2\|WP_012586144.1\|4185651_4186725_+\|Vi-polysaccharide-biosynthesis-UDP-N-acetylglucosaminuronic-acid-C-4-epimerase-TviC	unknown	unknown	gnl\|CDD\|185103
NC_011662.2\|WP_012586142.1\|4180590_4184376_+\|YjbH-domain-containing-protein	unknown	unknown	gnl\|CDD\|377600
NC_011662.2\|WP_144312180.1\|4171754_4172123_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274396
NC_011662.2\|WP_012586135.1\|4169161_4170103_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NC_011662.2\|WP_012586134.1\|4167969_4169160_+\|hypothetical-protein	unknown	unknown	unknown
NC_011662.2\|WP_144312182.1\|4184396_4185503_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	unknown	unknown	gnl\|CDD\|133463
NC_011662.2\|WP_012586136.1\|4170092_4170638_+\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NC_011662.2\|WP_012586137.1\|4170751_4171528_+\|WecB/TagA/CpsF-family-glycosyltransferase	unknown	unknown	gnl\|CDD\|119439
NC_011662.2\|WP_049766920.1\|4173807_4174839_+\|undecaprenyl-phosphate-glucose-phosphotransferase	unknown	unknown	gnl\|CDD\|274396
NC_011662.2\|WP_041589704.1\|4176690_4178820_-\|SLBB-domain-containing-protein	unknown	unknown	gnl\|CDD\|224512
NC_011662.2\|WP_083768711.1\|4189644_4190196_-\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NC_011662.2\|WP_144312181.1\|4179905_4180586_+\|YjbF-family-lipoprotein	unknown	unknown	gnl\|CDD\|378557
NC_011662.2\|WP_012586146.1\|4188272_4189106_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|224137
NC_011662.2\|WP_012586145.1\|4186810_4188247_+\|flippase	unknown	unknown	gnl\|CDD\|240533
NC_011662.2\|WP_004300731.1\|4179345_4179657_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171

Protein	Function_ID	Function_description	E-value
NC_011662.2\|WP_012586138.1\|4174845_4175226_-\|diacylglycerol-kinase	gnl\|CDD\|260132	cd14263, DAGK_IM_like, Integral membrane diacylglycerol kinase and similar enzymes. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of substrates such as diacylglycerol to phosphatidic acid or of undecaprenol to undecaprenyl phosphate. They are not related other cytosolic or membrane-associated kinases, including the eukaryotic diacylglycerol kinases.	6.25644e-30
NC_011662.2\|WP_012586133.1\|4166571_4167690_-\|ISAs1-family-transposase	gnl\|CDD\|379382	pfam13808, DDE_Tnp_1_assoc, DDE_Tnp_1-associated. This domain is frequently found N-terminal to the transposase, IS family DDE_Tnp_1, pfam01609 and its relatives.	5.61991e-32
NC_011662.2\|WP_041589703.1\|4175457_4176687_-\|LPS-biosynthesis-protein	gnl\|CDD\|225747	COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane].	2.06759e-21
NC_011662.2\|WP_012586132.1\|4164915_4165899_+\|glycosyltransferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.36035e-27
NC_011662.2\|WP_004357889.1\|4172311_4173673_-\|IS1380-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	7.79682e-10
NC_011662.2\|WP_012586144.1\|4185651_4186725_+\|Vi-polysaccharide-biosynthesis-UDP-N-acetylglucosaminuronic-acid-C-4-epimerase-TviC	gnl\|CDD\|185103	PRK15181, PRK15181, Vi polysaccharide biosynthesis UDP-N-acetylglucosaminuronic acid C-4 epimerase TviC.	8.87158e-167
NC_011662.2\|WP_012586142.1\|4180590_4184376_+\|YjbH-domain-containing-protein	gnl\|CDD\|377600	pfam06082, YjbH, Exopolysaccharide biosynthesis protein YbjH. YjbH is a family of Gram-negative beta-barrel outer-membrane lipoproteins that act as putative porins. YbjH is one of four gene-products expressed from an operon, yjbEFGH, which is regulated by the Rcs phosphorelay in a RcsA-dependent manner, similar to that of other exopolysaccharide biosynthetic pathways. It is highly possible that the yjbEFGH operon encodes a system involved in EPS secretion since none of the products is predicted to have enzymic activity, the products are all secreted and YbjH and F are predicted to be beta-barrel lipoproteins similar to porins. It may be that the operon products play some role in biofilm formation and/or matrix production.	0
NC_011662.2\|WP_144312180.1\|4171754_4172123_+\|hypothetical-protein	gnl\|CDD\|274396	TIGR03023, Sugar_transferase., Undecaprenyl-phosphate glucose phosphotransferase. This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis, the Methylobacillus EpsB protein involved in methanolan biosynthesis, as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein, which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase, and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.	2.20081e-11
NC_011662.2\|WP_012586135.1\|4169161_4170103_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	3.35266e-18
NC_011662.2\|WP_144312182.1\|4184396_4185503_+\|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase	gnl\|CDD\|133463	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins. WecA is an UDP-N-acetylglucosamine (GlcNAc):undecaprenyl-phosphate (Und-P) GlcNAc-1-phosphate transferase that catalyzes the formation of a phosphodiester bond between a membrane-associated undecaprenyl-phosphate molecule and N-acetylglucosamine 1-phosphate, which is usually donated by a soluble UDP-N-acetylglucosamine precursor. WecA participates in the biosynthesis of O antigen LPS in many enteric bacteria and is also involved in the biosynthesis of enterobacterial common antigen. A conserved short sequence motif and a conserved arginine at a cytosolic loop of this integral membrane protein were shown to be critical in recognition of substrate UDP-N-acetylglucosamine.	1.37721e-78
NC_011662.2\|WP_012586136.1\|4170092_4170638_+\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	9.11291e-41
NC_011662.2\|WP_012586137.1\|4170751_4171528_+\|WecB/TagA/CpsF-family-glycosyltransferase	gnl\|CDD\|119439	cd06533, Glyco_transf_WecG_TagA, The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.	7.12845e-73
NC_011662.2\|WP_049766920.1\|4173807_4174839_+\|undecaprenyl-phosphate-glucose-phosphotransferase	gnl\|CDD\|274396	TIGR03023, Sugar_transferase., Undecaprenyl-phosphate glucose phosphotransferase. This family of proteins encompasses the E. coli WcaJ protein involved in colanic acid biosynthesis, the Methylobacillus EpsB protein involved in methanolan biosynthesis, as well as the GumD protein involved in the biosynthesis of xanthan. All of these are closely related to the well-characterized WbaP (formerly RfbP) protein, which is the first enzyme in O-antigen biosynthesis in Salmonella typhimurium. The enzyme transfers galactose from UDP-galactose (NOTE: not glucose) to a polyprenyl carrier (utilizing the highly conserved C-terminal sugar transferase domain, pfam02397) a reaction which takes place at the cytoplasmic face of the inner membrane. The N-terminal hydrophobic domain is then believed to facilitate the "flippase" function of transferring the liposaccharide unit from the cytoplasmic face to the periplasmic face of the inner membrane. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase, and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.	6.07911e-168
NC_011662.2\|WP_041589704.1\|4176690_4178820_-\|SLBB-domain-containing-protein	gnl\|CDD\|224512	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis].	2.44387e-22
NC_011662.2\|WP_083768711.1\|4189644_4190196_-\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	1.02069e-26
NC_011662.2\|WP_144312181.1\|4179905_4180586_+\|YjbF-family-lipoprotein	gnl\|CDD\|378557	pfam11102, YjbF, Group 4 capsule polysaccharide lipoprotein gfcB, YjbF. This family includes lipoprotein GfcB (YmcC), involved in group 4 capsule polysaccharide formation. YjbF is a family of Gram-negative bacterial outer-membrane lipoproteins, predicted to be a beta-barrel and possibly a porin that is one of four gene-products expressed from an operon, yjbEFGH, which is regulated by the Rcs phosphorelay in a RcsA-dependent manner, similar to that of other exopolysaccharide biosynthetic pathways. It is highly possible that the yjbEFGH operon encodes a system involved in EPS secretion since none of the products is predicted to have enzymic activity, the products are all secreted and YbjF and H are predicted to be beta-barrel lipoproteins similar to porins. It may be that the operon products play some role in biofilm formation and/or matrix production.	6.27616e-07
NC_011662.2\|WP_012586146.1\|4188272_4189106_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|224137	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only].	7.96799e-12
NC_011662.2\|WP_012586145.1\|4186810_4188247_+\|flippase	gnl\|CDD\|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.28262e-54
NC_011662.2\|WP_004300731.1\|4179345_4179657_+\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.000124321

>NC_011662.2|WP_012586138.1|4174845_4175226_-|diacylglycerol-kinase
MRPPGKGLPFSRRVRFAWAGVRDAWRLEASFRSQCLAALAALFALAVLRPGWLWSAIVVVMIALVLAAELINTALEAALDGLHPEHARFVQVAKDCAAAAVLVLSGASVVAFACMLADLYGQATAG
>NC_011662.2|WP_049766920.1|4173807_4174839_+|undecaprenyl-phosphate-glucose-phosphotransferase
MVISAGVGVGLRLLVFMFLRRARRSGKNLKRVVVVRSIAGQEARLPSQLALREQGYELSGTISCSDGPDWLEGLCDEVNASGAHEVWLMLPLSQGMRVQSAIYALRHHVVSIRFMPQFDDLPLLNHQVSRVAGFYSIDLSVTPMDGIARIVKRTEDLVIGSLILLIIFPVCVMIALAIKLTSPGPVLFKQYRTGINGQHFKVYKFRSMVLHQEGDGQVTQARKGDARVTPIGAFLRRTSLDELPQFFNVLQGRMSIVGPRPHALAHNEYYKDLVESYMQRHKVKPGITGWAQVNGLRGETDTLEKMQARVEHDLWYIDNWSLWLDLKIIFLTVFKGFVNPNAY
>NC_011662.2|WP_004357889.1|4172311_4173673_-|IS1380-family-transposase
MPRFEVKQSAKLNLTSYSGLALIGQCCQAAQVEAVIDPRLPVSQGMRSSDLVKSVVGLLSLGKSDFEAIEPFRGDRFFKEALGLAKVPGSVWMRQRLDARAAELRELTDELSLRLLERTEAPITAHKGYVCADLDTFVMDNSDTKKEAVSRTYQGVDGYTPIALYLGNEGWNLGLELRAGSHHSALETEYFFERAFPRLRRVCAADAKLLWRADSGFDSARLLFALADERDRWAALGRSFDYLTKWNPRRQDKTAWVDRAEAAGVFEEVRAGKRVGLLDLKIDRAWKKAKRTLRLVVRVTERTIDKKGQHLLTPEIEIEGWWTSLEVAMADVIELYKHHGTHEQFHSEIKTDLDLERLPSGKFDTNDAVMHLAAFAYNCLRLIGQLGLTGELSPIRHPAKRRRIKTVLQEVMYRAAKFVEHARRLVLDFGRGVAAHVKVFTTVQARLCAVASP
>NC_011662.2|WP_144312180.1|4171754_4172123_+|hypothetical-protein
MPQSLNYTPTFAERYPVALAAALADAGTAILAAYAAFLLRFGSFDVDQRYFLGAITWAALVVGALFVMGAYGSWRGQSFARQVTRVVGGWLLAAAMLAMLGFLLKPESVLSSARTRSASPSA
>NC_011662.2|WP_012586137.1|4170751_4171528_+|WecB/TagA/CpsF-family-glycosyltransferase
MKNIFQDLAENPNLTTLSLEETADFLLSTPAESPPVVREDLNAFKICLREVNEDVRRAIENAELINMDGMSMVFAYEILYGKKFPRVTGCDLFIFLLSKLEKNNKTAYFLGATQETLDALVKVVSLRYNKTIIAGARNGYFKRSEWEDIIDSVNRSGADFLFVGTPSPQKEEFLNFAKSKLMNGMVLMGVGGSFDVVAGKVQRAPFWMQRWSLEWLYRILQEPRRMWKRYLVTNTRFLLFLLVAKYLLLCRRRKAPRA
>NC_011662.2|WP_012586136.1|4170092_4170638_+|acyltransferase
MASKLSLALYYLIVFHLPNTKYIKFFNKIRVWYASKILQVMEYHHQSILEDRVYLSDCKNVKIGRHCHINEGVFIQGASIGNHVMIAPNVAILNESHTYSDPTIPMIFQPTTEKRNPQISDDVWIGRNVIILPGVIIGRGSIVGAGAVVTKDVPSGAIVGGVPAKIIKMRDLSTSTQQQAL
>NC_011662.2|WP_012586135.1|4169161_4170103_+|glycosyltransferase-family-4-protein
MYPDRNPDTPYAGIFVKEQHESLIRNGVKCDLFVIEGFRSKIEYASTAINLLIKSQFGGYDIIHIHYGLSGLFTLLAPFRSIWKRTILTLHGGDILEDQGKTVQVLITKQVIKRIGKVITLNATMNRIVAQAQANYETLPCGVDTDFFSPQAAASKRNLILFPGRKDRTVKNFSFFQAVMNAYAERHGEMQIVPLDGFTREEVRHLMSESSALLMTSISEGSPQSIKEAMSCDLPVVSSDVGDVRSIVGSTPGTRIFQLSDRPDYVADLLHEAILEGSQRPGARRERILRLGLDNEQITKRLMQIYAEQIHGL
>NC_011662.2|WP_012586134.1|4167969_4169160_+|hypothetical-protein
MISIQSALTFLFTLKFALDFLSPFRDLNFVIFNTFVLLLFISQKYILQSIHKRHALLLGAYLFFCFIWLSSSGNVEHFFKFASLAIIFFVVRASAMHLDCNAIPLLSQRIFLIFIALASANFLISTELADPANREFFNFEHANLLGSYLLTSLPFLYISLLQERALTLRKTIISLLTLLSTSTGAFICSLLAFVNIKKLSLRFIVLNVIFSLIAAVTSYFYLRHFSPEMFAKIFGPLHLLLGGGGSDLVHAARQKLPIQVLGDEYQGSMLWRLYAYIVFIDFIIEQPYWSLFFGNGFLGFLEIWDGIAPHNDFLLILIDFGLLAFLALLYFLVRSFSWCLRRDIFMTPLILIMTLRLLTENNIYSYYILSNFLIISIVFFQAKEKLNKDHESTNHN
>NC_011662.2|WP_012586133.1|4166571_4167690_-|ISAs1-family-transposase
MSCLDEIDDPRKPSNGTLHDFREILVILIAAVLSDCDTVEDITFWARTKQAWLRRFLVLKNGIPSEETFLRILRALDPKQFENMFRRWVGGVVGALSDDAGLAGTIAIDGKTVRGSGSGGESAIHMVSAFATELGLVLGQEKVAAKSNEITAIPELLEALSIKGLLVTIDAMGCQKSIAKQIVAKKGDYLLMVKGNQPKLLEAIETAFIDQHGVESVDRSSRVERGHGRTVGQIASVLSAKGIVDPADWPKCVTIGRIDSMRVVGDKQSDLERRYYISSRALSAEQLAAAVRAHWGVENRLHWILDVSFSEDASTVAKDNAPQNLSLLRKIALTIIRADKTDTRKSSLRLKRKGAAWDDGVRERMLGIRAIC
>NC_011662.2|WP_012586132.1|4164915_4165899_+|glycosyltransferase
MNFMTDKPAISLVLPTYNVSRYIDRCLQSCIDQSCTNIEILVVDDCGTDDSVSRAMKWAALDPRIRIISNARNLGTYHARRVGTENSRADYVLYIDPDDTLHRDACLSIIHATEQTKPDIVLFEFATIPTPPWHQTPSVVPHPRLRRRHVLDAVMQTPHLPFGTPGKAYSKKVLAAAFSALCISTEERLTFAEDALLFFAALSVSSTFTVIDKRLYFYHRNTSSITQQVDSNSTLKNIKQVETIIEHMKRVSQLAQIGLGRDRQTSLYEYFRSRLSCEKHLLSRNLIDENGNSLYFSSVMHALKEQGHAKELFRILIFFFTFGLKRP
>NC_011662.2|WP_041589703.1|4175457_4176687_-|LPS-biosynthesis-protein
MTMNESTMQKAAIESPQGQMVVVEDDDEISLLDLAIVLAKFKKLILGLPVLVGALTVGATLLMTPIFTATTAILPPQQSQSTASALLGQLGGLAGIAGAAAGIKNPSDLYVGMLKSRTVADAMIARFDLVNYYEDEFAEDARKSLENVSSFTAGKDGIITISVDDKDPELAAKMANAYVEELNRLTEVLAVTEASQKRLFFERQMVDARDRLVAAEIEARSAMERGGLASIDAQGQAMIEVTARLRGQISVKEVEIGAMRAFAAEENPRLKAAQQELLALQTELARIEGASALRDTQVGGESSAAATNLQLLRNVKYYETLYQMLAQQFELAKIEEAKDSALIQVLDTAIPPERKSKPKRALIVILAVLAAGFVAVLIAFMKEAAQRAAEDPESAERMQLFKKYMSWRA
>NC_011662.2|WP_041589704.1|4176690_4178820_-|SLBB-domain-containing-protein
MIGGEGLSPSQDAALDQAVTVDADGNDRVGGTVRAARVLNDFQQFVARSTGQVLPLYGSGFFAGSRVFNSPTAPVADDYVLGPGDQVLVRIWGAFESQTRAQIDRSGMITLPTIGPVSLAGVRIANAVQVIENQVGRIYRDVSVSVSLDRVRGITVFVVGQARRPGTYTVSGNSTLIGALFQSGGPGANGSLRRVQVKRDNQVITEIDLYRFLANGDTSADIRLVDGDVIVIPPAHGYVALTGQVKAPAIYELKDRTDTLRSVLTVSGGLPVVADPRLAFVERLDPSADQPRSVFEVSLQPGQPDFVLKSGDLVAVQPILAEFANAVTLRGGVSAPVRLPYRAGMRISDLIPDKATLINRYVVDNQNRSLLDRGSFVGDVGNLFVDINMDYAVVERLERPQMALKLIPFSLNGLFADPNGPDNLRLQAGDTISIFTAGDVRVPVSRRRVVMRVEGEVNRPGVYVAEPGETLVNIIEKAGGPTADAYLFGAEFYRESVRRSQQANLDKLVQRLEQQAVAESARVSANIIGDAQAVAQAQAQLRAEREARGRFLARMRTLKSSGRMSLGLPADEPSFAQIPGFRLENGDRLVIPNRPDFVQVFGAVNTESALLWRPSRTVSDYLEQAGMSREGDRSAAFVLRADGTVVAETGSWFSSVMGTTVLPGDIIVIPELIDRESGWTAFARIAKDWTQIFANLGLGVAAVRSIEND
>NC_011662.2|WP_004300731.1|4179345_4179657_+|hypothetical-protein
MKKTALIAAILAFSTAPVLAQTAPRPGTGAPAQAAPAPAQAGATGAQAGAAGSGAGAAGASAAAVGGLTAGTVAAVAVGVAAVAAAASSDSSSGTTGTTGTTR
>NC_011662.2|WP_144312181.1|4179905_4180586_+|YjbF-family-lipoprotein
MLAILACAACSTDSTNISRTFELAYRGGSLADRAAPNPAYRYLRTVVDGRSALLVLGYTDPDPATPDAPPIEVWYSAEGEVVRLQQGRVVGTSGLSTDWRSTRAPDAPTWGSLVASAAQDRAAGQVLATWQRTRDESAYRSGVIDRISVHAIAAPRGTELAGLAPESLQWFEERAEPIVPPAGTPGAVRLTARYALRVDSGAIEVVYTEHCLGPELCLSLQRWPAR
>NC_011662.2|WP_012586142.1|4180590_4184376_+|YjbH-domain-containing-protein
MTRPLPAATTLARPVRPSRLCLAVAQVCIVLGMPTAAGNAQAGGGATTSVASAQTAIRAGERLSDWLLRNPPGAGDDPAALAWQVPSARQAQAELKQALLAQLWSARDLQADETTRQRLADWLRSLPVTGRVPLAIVDARWLQANPDQDPILAPGHALVLPQRPGTVTVLADDGRPCAVVHRPGTQARGYLQACIGGAASEADMAWIVQPDGRVQRFGIATWNAEPQSEPAPGAWIWAPRRSAAWPEDFSDRLATFLATQSPTPIAARAAPTQTGTPIAARAAPTQTGTPTTAPVGATQVAIPPSDPAPAAGQHDERPIAARAAPTQTGTPPSAPVGATQVAIPPSDPVVARPGVHTANDWGFIGLLQTPTARMSPAGELRFHLSRVEPYTRGSVVAQPFDWLEAGFRYTSVSNRLYGPQDLSGNQSYKDKSIDFKLRLAQETAHTPALAIGMTDIGGTGLFSGEYLVASKRSGDFDWSLGLGWGYVGNAGRVKNPFTWFDDSFAEREEGAGGGSGGEFSASNYFKGRTSFFGGVQYAPSDDWVLKLEYDGNDYQNEPQGNNQKHDSPFNVGVVYRYASGLDLTAGLERGNTLMLGLTLHGSLADLTVPKLLDPSYPRPLSTYPAGPTDWARMSAEFTEQTRWPVREVRRQGTDLQLVVEEPYTIYLRDRIDRAVAVLHRHAPADVRRFVFSFHERGLPLTDWVVLRDEWVARQTRYRAHAEQFEAVVAAEHWPAHSQEKLWVGPAERFSTGLEPSYSQSLGGPDGFILFQLGITAPTELRLADDTWLSGRANLGLVDNYDKFEYDGPSNLPRVRTDIRKYVTESDLTLPTLQLNHVRALGTNQYASLYGGYLEPMFAGIGGEWLYRPWNSHFAFGLDLNHVRQREFDQHFGLRDYDVTTGHATLYWHTGWQNTLVKLSAGQYLAGDRGVTVDIARQFDNGVKMGVFATKTDVSAEEFGEGSFDKGIYLSIPFDAMLPFSSARTADIIWRPLTRDGGAMLSRTLSLFDLTRLRDRRVGRYAPAGSQAWLALGDDREDGRSIWGELGHTGGWLADKIFSPEAVRPLLLGAGLTGLSATLDRPLADWADEHQSGSWDTLGEAASLIPFGLAAGAGALWMGLADDAASDTARTSLLAAGWTLGAQLATKYAVNRARPEAGLGPHEFRGPGNGGSDSSFPSIHMGVAFALATPFAQKYDAPWLYGLAAATGFGRIQERQHFFSDVVAGSLMGYGIASLLVDEQRSRDGPVITLGTDRSLQAHWKF
>NC_011662.2|WP_144312182.1|4184396_4185503_+|undecaprenyl/decaprenyl-phosphate-alpha-N-acetylglucosaminyl-1-phosphate-transferase
MNTMLTQLPVLTKTAVLAVVPLLLTLAVIQVLIKPARRIGLVDRPGGRKEHDGEIPLIGGLGMAIALILSVQLAEPQTLIDLNVLGGIALLVVVGVLDDFLDIRAKTKLLVQAIAAMLIVLPSGVYITHVGDILGIGNISLGPLALPFTVFAVVGLINAVNMADGADGLAAGLTSTTVVWFIACALVVGNQSMALDLVILLAVTVGFLCYNMRTPLRHKAAVFMGDAGSMMLGALLAWFAIQLPHNSTAVPPPPPFAILWMLGLPVLDTVVLMIRRMLQGRSPFSAGRDHMHHIWMHAGFSPGETTLLLMLLNALIGLVGFAGWRSGVPEWALALGYVGLFAIQASITQHAWVVSKWLKRHHCARAQQ
>NC_011662.2|WP_012586144.1|4185651_4186725_+|Vi-polysaccharide-biosynthesis-UDP-N-acetylglucosaminuronic-acid-C-4-epimerase-TviC
MTPYQQLLQDLPRAPKTWLITGAAGFIGSNLLETLLTLDQTVVGLDNFATGHQRNLDEVRSVVTREQWARFAFLKGDIRELEDCRRACNGVDYVLHQAALGSVPRSLADPITSNATNIDGFLNMLVAARDEGVKSFVYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADVFARSYGFTTIGLRYFNVFGRRQDPDGAYAAVIPKWTAALLKGDTVYINGDGETSRDFCYVANAVQANILAATTSNPEARNQVYNVAVGDRTTLNTLFLMLRNNLLTHDVSPNVRPTYREFRAGDVRHSQAATEKAQSLLGYAPSHTLEQGIAEAVDWYLRRLKASKAPQSCVASPDASS
>NC_011662.2|WP_012586145.1|4186810_4188247_+|flippase
MSVSRHTAYNLMGTAAPILVALVSIPIYINLIGEQRYGMLSIAWILLGYFGVFDLGIGRAAAQRIASLDKTQATRGQAFWTALTLNSVLGALGGLAIWPAAHYFFAHQFQIENDLKPEVLQALPWLVLALPLSTITGVLSGALQGVERFLQLNAINATGSILFQTLPLLAAWLWTPDLGILMPVAIGSRLLGVIFLFFSCLRHVTSNLTPSFNTHEARELLKFGGWITVSSLVSPVMVMADRFIIGAIIGAKAVTQYTVPFQLAERSTIFPSALSSSLFPRFAKDSDHDGKQIAVISVRLLLVLMTPVMVAAILLADPFLRIWISSEFSEQSALTLQILLIGFWINGVARIPHARLQATGHPNVVAICHLMELIPYLVVLFLGLNVGGVAGAAAAFTLRVFADHILLSAQAGTLRSTIFLTWCGLVFLGAALLLSQQSLSTPIMVSAGLVLFALTIFWSIMQAPGALKKWIKNLYKRA
>NC_011662.2|WP_012586146.1|4188272_4189106_+|glycosyltransferase-family-2-protein
MKFVFIAVNYNGAAHTENYLQSLQEMTLPDGDTLEAIIVDNNSPDSDLEKVRSSVAQRPFARLIAQDHNPGYFRGLNAGIDTCPKTEGTLLVVGNNDLKFAMDFIIRLKEIPYEKDVLVIAPNITTLDGRRQNPHVVKNVPYSELVMTRIYFTNYYIGQAGRLINRTIRSLLRRVRPAPKNVRPKPEPGRMKIKRGIGACYVLTPYFFHHYQRLDGRVFLWGEEALLSHQVESAGGCTLYDPSIKILHHESASVKSIESRKRYEIVKASYKIYRDYL
>NC_011662.2|WP_083768711.1|4189644_4190196_-|IS630-family-transposase
MAFERAKQEIAELRARAQADEIEVAYLDEAGFAQIHPNRSAWTPVGEQHCIEAIRGKRLNVVAALLSSGKVFSAKLWCAFKAPLFASFVGLLKEQVTKPLTVILDNASVHKSRAIAPLMEVLRRQGVTLYFLPPYSPELNRIEKLWHLVKHTWMAPRHRNAQTLENDVGEILDNVGTRYHMAF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NC_011662_9	9.35\|2520174\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520174-2520205	32	MT711888	Pseudomonas phage Dolphis, complete genome	90763-90794	4	0.875
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	447689-447720	5	0.844
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	680498-680529	5	0.844
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	1072344-1072374	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	128769-128799	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	337941-337971	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013600	Rhizobium sp. N741 plasmid pRspN741e, complete sequence	339138-339168	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	339138-339168	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	706017-706047	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013510	Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence	337579-337609	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013521	Rhizobium sp. N113 plasmid pRspN113d, complete sequence	341826-341856	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013494	Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence	335944-335974	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	404052-404082	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	339138-339168	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP021029	Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence	189194-189224	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5029856-5029886	5	0.839
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	478438-478468	5	0.839
NC_011662_9	9.10\|2518649\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518649-2518680	32	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	397170-397201	6	0.812
NC_011662_9	9.10\|2518649\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518649-2518680	32	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	2716-2747	6	0.812
NC_011662_9	9.10\|2518649\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518649-2518680	32	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	845746-845777	6	0.812
NC_011662_9	9.11\|2518710\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518710-2518741	32	MT889376	Arthrobacter phage Phives, complete genome	41935-41966	6	0.812
NC_011662_9	9.11\|2518710\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518710-2518741	32	MN908689	Arthrobacter phage DrSierra, complete genome	40337-40368	6	0.812
NC_011662_9	9.11\|2518710\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518710-2518741	32	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	132432-132463	6	0.812
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP039918	Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626a, complete sequence	7601-7632	6	0.812
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP039905	Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence	7601-7632	6	0.812
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP039909	Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence	202459-202490	6	0.812
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NZ_CP038636	Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence	1184464-1184495	6	0.812
NC_011662_9	9.20\|2519259\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519259-2519290	32	NZ_CP010270	Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence	70283-70314	6	0.812
NC_011662_9	9.29\|2519808\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2519808-2519839	32	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	520196-520227	6	0.812
NC_011662_9	9.35\|2520174\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520174-2520205	32	NZ_CP010421	Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence	23208-23239	6	0.812
NC_011662_9	9.35\|2520174\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520174-2520205	32	NZ_CP010421	Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence	227585-227616	6	0.812
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	433960-433990	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	96410-96440	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP042265	Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence	14497-14527	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	422801-422831	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_LR134454	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence	127200-127230	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1087053-1087083	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013515	Rhizobium sp. N1314 plasmid pRspN1314d, complete sequence	187993-188023	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013605	Rhizobium sp. N731 plasmid pRspN731d, complete sequence	187987-188017	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MF324912	Mycobacterium phage Phrank, complete genome	44891-44921	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MT723940	Mycobacterium phage Ellie, complete genome	44875-44905	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MF140398	Mycobacterium phage Amohnition, complete genome	45363-45393	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MF324915	Mycobacterium phage Amgine, complete genome	45852-45882	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MF140406	Mycobacterium phage DarthP, complete genome	45217-45247	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MN369762	Mycobacterium phage Bryler, complete genome	44913-44943	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MH910038	Mycobacterium phage LeMond, complete genome	45514-45544	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MN234199	Mycobacterium phage Ekdilam, complete genome	45442-45472	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MT310859	Mycobacterium phage MarkPhew, complete genome	45016-45046	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MK460246	Mycobacterium phage Nibb, complete genome	45215-45245	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MH910039	Mycobacterium phage Oscar, complete genome	45431-45461	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MF324913	Mycobacterium phage Cain, complete genome	44901-44931	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MF324911	Mycobacterium phage SirPhilip, complete genome	45566-45596	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	879474-879504	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	251677-251707	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_009427	Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence	39609-39639	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_LR134451	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence	35210-35240	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	950049-950079	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013635	Rhizobium sp. N324 plasmid pRspN324e, complete sequence	285335-285365	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	1232742-1232772	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4490838-4490868	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	251677-251707	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	787775-787805	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	345317-345347	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	581154-581184	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	656279-656309	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022565	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence	717221-717251	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	252189-252219	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	708446-708476	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	158370-158400	6	0.806
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	528857-528887	6	0.806
NC_011662_9	9.41\|2520539\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520539-2520570	32	NZ_CP035512	Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence	8282-8313	6	0.812
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NZ_CP006370	Aureimonas sp. AU20 plasmid pAU20c, complete sequence	202551-202582	7	0.781
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1495534-1495565	7	0.781
NC_011662_9	9.2\|2518161\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518161-2518192	32	NC_008741	Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence	17306-17337	7	0.781
NC_011662_9	9.2\|2518161\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518161-2518192	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	227987-228018	7	0.781
NC_011662_9	9.3\|2518222\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518222-2518253	32	NZ_CP031358	Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence	310189-310220	7	0.781
NC_011662_9	9.3\|2518222\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518222-2518253	32	MN694468	Marine virus AFVG_250M452, complete genome	32967-32998	7	0.781
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_KY270855	Pseudomonas putida strain 12969 plasmid p12969-2, complete sequence	71907-71938	7	0.781
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP022563	Pseudomonas monteilii strain B5 plasmid pSH5-1, complete sequence	111304-111335	7	0.781
NC_011662_9	9.5\|2518344\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518344-2518375	32	NC_022001	Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence	52032-52063	7	0.781
NC_011662_9	9.6\|2518405\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518405-2518436	32	MN450150	Pantoea phage vB_PagP-SK1, complete genome	9016-9047	7	0.781
NC_011662_9	9.6\|2518405\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518405-2518436	32	HQ728265	Erwinia phage vB_EamP-L1, complete genome	8379-8410	7	0.781
NC_011662_9	9.6\|2518405\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518405-2518436	32	CP015514	Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence	290176-290207	7	0.781
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	1622459-1622490	7	0.781
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP010990	Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence	240388-240419	7	0.781
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	613599-613630	7	0.781
NC_011662_9	9.10\|2518649\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518649-2518680	32	NZ_CP020695	Sulfitobacter sp. D7 plasmid p1SUD7, complete sequence	15037-15068	7	0.781
NC_011662_9	9.11\|2518710\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518710-2518741	32	NZ_CP039918	Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626a, complete sequence	97264-97295	7	0.781
NC_011662_9	9.11\|2518710\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518710-2518741	32	NZ_LR723676	Rhizobium sp. TCK plasmid 2	66398-66429	7	0.781
NC_011662_9	9.11\|2518710\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518710-2518741	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1673124-1673155	7	0.781
NC_011662_9	9.12\|2518771\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518771-2518802	32	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	1522014-1522045	7	0.781
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP006988	Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence	370113-370144	7	0.781
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP040642	Agrobacterium sp. T29 plasmid unnamed2, complete sequence	421671-421702	7	0.781
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	354088-354119	7	0.781
NC_011662_9	9.14\|2518893\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518893-2518924	32	MH399779	Microbacterium phage Jacko, complete genome	4455-4486	7	0.781
NC_011662_9	9.14\|2518893\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518893-2518924	32	NZ_CP011928	Labrenzia sp. CP4 plasmid pBCL1, complete sequence	81213-81244	7	0.781
NC_011662_9	9.16\|2519015\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519015-2519046	32	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	386671-386702	7	0.781
NC_011662_9	9.16\|2519015\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519015-2519046	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	942815-942846	7	0.781
NC_011662_9	9.16\|2519015\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519015-2519046	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	870309-870340	7	0.781
NC_011662_9	9.22\|2519381\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519381-2519412	32	NZ_CP019604	Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence	51018-51049	7	0.781
NC_011662_9	9.24\|2519503\|32\|NC_011662\|CRISPRCasFinder,CRT	2519503-2519534	32	NC_013545	Sinorhizobium meliloti plasmid pSmeSM11a, complete sequence	27028-27059	7	0.781
NC_011662_9	9.24\|2519503\|32\|NC_011662\|CRISPRCasFinder,CRT	2519503-2519534	32	NZ_CP021821	Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence	409623-409654	7	0.781
NC_011662_9	9.24\|2519503\|32\|NC_011662\|CRISPRCasFinder,CRT	2519503-2519534	32	NZ_CP021817	Sinorhizobium meliloti strain M270 plasmid accessoryC, complete sequence	114825-114856	7	0.781
NC_011662_9	9.24\|2519503\|32\|NC_011662\|CRISPRCasFinder,CRT	2519503-2519534	32	NZ_CP021215	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11c, complete sequence	139341-139372	7	0.781
NC_011662_9	9.35\|2520174\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520174-2520205	32	NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	161531-161562	7	0.781
NC_011662_9	9.35\|2520174\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520174-2520205	32	NZ_LR594668	Variovorax sp. SRS16 plasmid 3	485243-485274	7	0.781
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	804004-804034	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	1219805-1219835	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	599776-599806	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP016287	Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence	140610-140640	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP054022	Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence	169665-169695	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	142137-142167	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	1120563-1120593	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	1052377-1052407	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_016588	Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence	181585-181615	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013856	Pseudonocardia sp. HH130630-07 plasmid pLS2-2, complete sequence	101416-101446	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP019938	Ketogulonicigenium robustum strain SPU_B003 plasmid unnamed1, complete sequence	216056-216086	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP009405	Mycobacterium avium subsp. hominissuis strain OCU464 plasmid p78K, complete sequence	7046-7076	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	541820-541850	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	CP007645	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence	600236-600266	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	291011-291041	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP039644	Azospirillum sp. TSA2s plasmid p2, complete sequence	16257-16287	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MF324912	Mycobacterium phage Phrank, complete genome	27994-28024	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MN369762	Mycobacterium phage Bryler, complete genome	28018-28048	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	MF324913	Mycobacterium phage Cain, complete genome	28006-28036	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP050095	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence	230482-230512	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP050098	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence	188248-188278	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP050104	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence	459738-459768	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_008381	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence	435037-435067	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	CP054928	Streptomyces fulvissimus strain NA06532 plasmid unnamed2, complete sequence	10828-10858	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_LR134451	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence	186044-186074	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP020897	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence	195910-195940	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP020897	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence	117868-117898	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP053440	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence	193800-193830	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013631	Rhizobium sp. N324 plasmid pRspN324a, complete sequence	250541-250571	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013524	Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence	277242-277272	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013524	Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence	147004-147034	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	283963-283993	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	155858-155888	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP025507	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence	160397-160427	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	326010-326040	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013586	Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence	288815-288845	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013586	Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence	161098-161128	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	285484-285514	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	157856-157886	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	285973-286003	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	158825-158855	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	285969-285999	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	158823-158853	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013528	Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence	283524-283554	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	285969-285999	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	158823-158853	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013538	Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence	278352-278382	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013538	Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence	149747-149777	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013539	Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence	59064-59094	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	289383-289413	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	162235-162265	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	283963-283993	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	155858-155888	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP034351	Streptomyces sp. W1SF4 plasmid p1, complete sequence	123691-123721	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP050109	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence	459738-459768	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1487057-1487087	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013581	Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence	283527-283557	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	285973-286003	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	158825-158855	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP029358	Azospirillum sp. CFH 70021 plasmid unnamed3	37875-37905	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	4831-4861	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	893546-893576	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	236266-236296	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP020701	Streptomyces tsukubensis strain NRRL 18488 plasmid pSTS1, complete sequence	16590-16620	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	306699-306729	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP032327	Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence	121764-121794	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	304735-304765	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	591788-591818	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP015738	Shinella sp. HZN7 plasmid pShin-02, complete sequence	189281-189311	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052758	Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence	80293-80323	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP007798	Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence	102926-102956	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	150275-150305	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	358490-358520	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	2035138-2035168	7	0.774
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	189898-189928	7	0.774
NC_011662_9	9.46\|2520846\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520846-2520877	32	NZ_CP018234	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed6, complete sequence	48579-48610	7	0.781
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NZ_CP021914	Sagittula sp. P11 plasmid unnamed1, complete sequence	294747-294778	8	0.75
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NZ_LR594670	Variovorax sp. SRS16 plasmid 5	7569-7600	8	0.75
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NZ_CP015089	Pelagibaca abyssi strain JLT2014 plasmid pPABY5, complete sequence	87157-87188	8	0.75
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NC_005793	Achromobacter denitrificans plasmid pEST4011, complete sequence	73641-73672	8	0.75
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NZ_CP043477	Xanthomonas hyacinthi strain CFBP 1156 plasmid unnamed, complete sequence	204-235	8	0.75
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NC_019378	Burkholderia cepacia plasmid pIJB1, complete sequence	42418-42449	8	0.75
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NZ_LR594674	Variovorax sp. PBL-E5 plasmid 4	40953-40984	8	0.75
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NZ_LR594665	Variovorax sp. RA8 plasmid 4	7569-7600	8	0.75
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	AM419438	Archaeal BJ1 virus complete genome	37721-37752	8	0.75
NC_011662_9	9.1\|2518100\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518100-2518131	32	NC_008695	Archaeal BJ1 virus, complete genome	37721-37752	8	0.75
NC_011662_9	9.3\|2518222\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518222-2518253	32	KM083128	Mycobacterium phage Sparky, complete genome	11639-11670	8	0.75
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	73681-73712	8	0.75
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	MT310854	Streptomyces phage CricKo, complete genome	40472-40503	8	0.75
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	MH155877	Streptomyces phage Rainydai, complete genome	40472-40503	8	0.75
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	MT657340	Streptomyces phage Thiqqums, complete genome	40472-40503	8	0.75
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	MH155880	Streptomyces phage SendItCS, complete genome	39785-39816	8	0.75
NC_011662_9	9.5\|2518344\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518344-2518375	32	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	488222-488253	8	0.75
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	40483-40514	8	0.75
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP041223	Porphyrobacter sp. YT40 plasmid pYT40, complete sequence	166302-166333	8	0.75
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_LR134447	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 5, complete sequence	80463-80494	8	0.75
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	380053-380084	8	0.75
NC_011662_9	9.9\|2518588\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518588-2518619	32	MH536819	Gordonia phage Fury, complete genome	48443-48474	8	0.75
NC_011662_9	9.9\|2518588\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518588-2518619	32	MH576960	Gordonia phage Pleakley, complete genome	48444-48475	8	0.75
NC_011662_9	9.10\|2518649\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518649-2518680	32	NZ_CP029358	Azospirillum sp. CFH 70021 plasmid unnamed3	261967-261998	8	0.75
NC_011662_9	9.11\|2518710\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518710-2518741	32	MF185718	Arthrobacter phage Colucci, complete genome	11354-11385	8	0.75
NC_011662_9	9.11\|2518710\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518710-2518741	32	MN234195	Mycobacterium phage Xula, complete genome	46835-46866	8	0.75
NC_011662_9	9.11\|2518710\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518710-2518741	32	HQ728524	Mycobacterium phage Wee, complete genome	57160-57191	8	0.75
NC_011662_9	9.11\|2518710\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518710-2518741	32	NC_025433	Mycobacteriophage Taj, complete genome	57084-57115	8	0.75
NC_011662_9	9.12\|2518771\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518771-2518802	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	642939-642970	8	0.75
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP030761	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence	1127083-1127114	8	0.75
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP022666	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence	1105446-1105477	8	0.75
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP050086	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence	702582-702613	8	0.75
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP021214	Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence	42065-42096	8	0.75
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	JN698995	Mycobacterium phage Dori, complete genome	59062-59093	8	0.75
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NZ_CP013109	Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence	543115-543146	8	0.75
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	220522-220553	8	0.75
NC_011662_9	9.24\|2519503\|32\|NC_011662\|CRISPRCasFinder,CRT	2519503-2519534	32	NZ_CP049029	Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence	82311-82342	8	0.75
NC_011662_9	9.29\|2519808\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2519808-2519839	32	NC_007961	Nitrobacter hamburgensis X14 plasmid 3, complete sequence	24254-24285	8	0.75
NC_011662_9	9.29\|2519808\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2519808-2519839	32	NZ_CP035513	Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence	39823-39854	8	0.75
NC_011662_9	9.31\|2519930\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2519930-2519961	32	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	47100-47131	8	0.75
NC_011662_9	9.35\|2520174\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520174-2520205	32	MT104473	Pseudomonas phage MR13, complete genome	18321-18352	8	0.75
NC_011662_9	9.35\|2520174\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520174-2520205	32	MT104475	Pseudomonas phage MR15, complete genome	18302-18333	8	0.75
NC_011662_9	9.35\|2520174\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520174-2520205	32	KJ507100	Pseudomonas phage phiPSA1, complete genome	19365-19396	8	0.75
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	93329-93359	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022999	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence	548880-548910	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013529	Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence	293922-293952	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013582	Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence	293922-293952	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_AP022578	Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence	42571-42601	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP033036	Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence	188366-188396	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP010861	Marinovum algicola DG 898 plasmid pMaD6, complete sequence	116162-116192	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	GQ919031	Streptomyces phage ZL12, complete genome	35671-35701	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP010956	Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence	1467-1497	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP039696	Novosphingobium sp. ABRDHK2 plasmid pABRDHK21, complete sequence	26859-26889	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_012523	Rhodococcus opacus B4 plasmid pKNR, complete sequence	58074-58104	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	40928-40958	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_017959	Tistrella mobilis KA081020-065 plasmid pTM4, complete sequence	58415-58445	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP023549	Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence	79347-79377	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	442436-442466	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_017805	Deinococcus gobiensis I-0 plasmid P1, complete sequence	29510-29540	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP018224	Tardibacter chloracetimidivorans strain JJ-A5 plasmid pHSL3, complete sequence	35950-35980	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	284487-284517	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP046573	Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence	488458-488488	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_016591	Burkholderia sp. YI23 plasmid byi_2p, complete sequence	221706-221736	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP009453	Sphingopyxis sp. 113P3 plasmid unnamed, complete sequence	148755-148785	8	0.742
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP041019	Sphingobium fuliginis ATCC 27551 plasmid pSF2, complete sequence	5868-5898	8	0.742
NC_011662_9	9.40\|2520478\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520478-2520509	32	MT663720	Pseudomonas phage DDSR119, complete genome	48004-48035	8	0.75
NC_011662_9	9.45\|2520785\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520785-2520816	32	NZ_LR134456	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence	260345-260376	8	0.75
NC_011662_9	9.45\|2520785\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520785-2520816	32	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	565942-565973	8	0.75
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	134867-134898	9	0.719
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	929538-929569	9	0.719
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	222527-222558	9	0.719
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	MT310887	Microbacterium phage Unphazed, complete genome	15400-15431	9	0.719
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	227903-227934	9	0.719
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP018385	Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence	152707-152738	9	0.719
NC_011662_9	9.5\|2518344\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518344-2518375	32	NC_003085	Myxococcus phage Mx8, complete genome	48822-48853	9	0.719
NC_011662_9	9.5\|2518344\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518344-2518375	32	AF396866	Bacteriophage Mx8, complete genome	48822-48853	9	0.719
NC_011662_9	9.6\|2518405\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518405-2518436	32	NC_007959	Nitrobacter hamburgensis X14 plasmid 1, complete sequence	163340-163371	9	0.719
NC_011662_9	9.6\|2518405\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518405-2518436	32	AP013539	Uncultured phage_MedDCM-OCT-S28-C3 DNA, complete genome, group G7, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C3	14192-14223	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP034431	Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence	133428-133459	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	762221-762252	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	584277-584308	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	1310169-1310200	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1087651-1087682	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1087597-1087628	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	576239-576270	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	KM389212	UNVERIFIED: Pseudomonas phage JBD88b clone contig00001 genomic sequence	39188-39219	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	KM389210	UNVERIFIED: Pseudomonas phage DO4 clone contig00001 genomic sequence	9912-9943	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NC_023724	Mycobacterium phage Larva, complete genome	49552-49583	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	MF185717	Mycobacterium phage AlleyCat, complete genome	48678-48709	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NC_028947	Mycobacterium phage Kratio, complete genome	50145-50176	9	0.719
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	MF185719	Mycobacterium phage Edugator, complete genome	50098-50129	9	0.719
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NC_014840	Pantoea sp. At-9b plasmid pPAT9B03, complete sequence	154356-154387	9	0.719
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP021373	Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence	69782-69813	9	0.719
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP029234	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence	197643-197674	9	0.719
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	266320-266351	9	0.719
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NC_009717	Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence	309479-309510	9	0.719
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP021128	Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence	216323-216354	9	0.719
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	926977-927008	9	0.719
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP031083	Paracoccus yeei strain CCUG 32053 plasmid pYEE5, complete sequence	72476-72507	9	0.719
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	MT521999	Gordonia Phage Jablanski, complete genome	3592-3623	9	0.719
NC_011662_9	9.16\|2519015\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519015-2519046	32	NZ_CP040253	Mycobacterium avium subsp. hominissuis strain 101115 plasmid pMARIA, complete sequence	26282-26313	9	0.719
NC_011662_9	9.16\|2519015\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519015-2519046	32	NZ_CP040245	Mycobacterium avium subsp. hominissuis strain 101034 plasmid pMARIA, complete sequence	40237-40268	9	0.719
NC_011662_9	9.16\|2519015\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519015-2519046	32	NZ_CP040249	Mycobacterium avium subsp. hominissuis strain 101174 plasmid pMARIA, complete sequence	36196-36227	9	0.719
NC_011662_9	9.16\|2519015\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519015-2519046	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1145252-1145283	9	0.719
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	1988645-1988676	9	0.719
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NZ_CP032230	Streptomyces seoulensis strain KCTC 9819 plasmid unnamed	10174-10205	9	0.719
NC_011662_9	9.20\|2519259\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519259-2519290	32	KJ608188	Enterococcus phage EFC-1, complete genome	34369-34400	9	0.719
NC_011662_9	9.20\|2519259\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519259-2519290	32	GQ452243	Enterococcus phage phiEf11, complete genome	17996-18027	9	0.719
NC_011662_9	9.24\|2519503\|32\|NC_011662\|CRISPRCasFinder,CRT	2519503-2519534	32	NZ_CP022567	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence	39756-39787	9	0.719
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP027859	Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence	145259-145289	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	1723061-1723091	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP039340	Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence	1230776-1230806	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1023384-1023414	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP021449	Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence	447999-448029	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP030772	Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence	285075-285105	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	1610859-1610889	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1646765-1646795	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1025083-1025113	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	215151-215181	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	1118427-1118457	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1676803-1676833	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013526	Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence	456543-456573	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	472070-472100	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP020951	Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence	316755-316785	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1723046-1723076	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	459348-459378	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1852415-1852445	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013562	Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence	500159-500189	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	456520-456550	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	1327910-1327940	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013531	Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence	486456-486486	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	806559-806589	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	445064-445094	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	473255-473285	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	1607530-1607560	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	470941-470971	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	472070-472100	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	219930-219960	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	594122-594152	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1686291-1686321	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP015851	Ralstonia solanacearum strain YC40-M plasmid, complete sequence	786958-786988	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013584	Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence	486456-486486	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP049906	Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence	680292-680322	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	456520-456550	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	1393903-1393933	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	1618009-1618039	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	1645471-1645501	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	1612827-1612857	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1691019-1691049	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	1426380-1426410	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	1566236-1566266	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	130332-130362	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1612306-1612336	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1697771-1697801	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1690986-1691016	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1601547-1601577	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1674793-1674823	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1689780-1689810	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	456032-456062	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	772842-772872	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052077	Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence	1588572-1588602	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1601859-1601889	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1674793-1674823	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1689816-1689846	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1601547-1601577	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052079	Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence	1589218-1589248	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1600750-1600780	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1674793-1674823	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1674793-1674823	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1674793-1674823	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1689816-1689846	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP048631	Ancylobacter pratisalsi strain DSM 102029 plasmid pLGM, complete sequence	104773-104803	9	0.71
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	355002-355032	9	0.71
NC_011662_9	9.43\|2520661\|33\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520661-2520693	33	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1554020-1554052	9	0.727
NC_011662_9	9.44\|2520723\|33\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520723-2520755	33	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1554020-1554052	9	0.727
NC_011662_9	9.2\|2518161\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518161-2518192	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	674369-674400	10	0.688
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP051471	Rhodobacter sphaeroides strain CH10 plasmid pRspCH10B, complete sequence	72889-72920	10	0.688
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP030274	Rhodobacter sphaeroides 2.4.1 plasmid pB, complete sequence	94357-94388	10	0.688
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	CP047034	Rhodobacter sphaeroides strain DSM 158 plasmid pB, complete sequence	18833-18864	10	0.688
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP015291	Rhodobacter sphaeroides strain MBTLJ-20 plasmid c, complete sequence	33181-33212	10	0.688
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP047040	Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pB, complete sequence	18813-18844	10	0.688
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NC_010721	Methylorubrum populi BJ001 plasmid pMPOP02, complete sequence	21363-21394	10	0.688
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NC_011962	Rhodobacter sphaeroides KD131 plasmid pRSKD131A, complete sequence	62433-62464	10	0.688
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	466966-466997	10	0.688
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP015215	Rhodobacter sphaeroides strain MBTLJ-13 plasmid d, complete sequence	58170-58201	10	0.688
NC_011662_9	9.6\|2518405\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518405-2518436	32	NC_048144	Microbacterium phage Schubert, complete genome	19562-19593	10	0.688
NC_011662_9	9.7\|2518466\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518466-2518497	32	NZ_MF156695	Klebsiella pneumoniae strain 1642 plasmid p1642-1, complete sequence	65729-65760	10	0.688
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	802059-802090	10	0.688
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	1011011-1011042	10	0.688
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	771862-771893	10	0.688
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	771869-771900	10	0.688
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP023000	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence	957400-957431	10	0.688
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_AP014659	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence	76941-76972	10	0.688
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_AP014688	Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence	18023-18054	10	0.688
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	430842-430873	10	0.688
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NZ_CP049701	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence	25989-26020	10	0.688
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	788238-788269	10	0.688
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	751528-751559	10	0.688
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP032342	Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence	514137-514168	10	0.688
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP033321	Azospirillum brasilense strain Cd plasmid p3, complete sequence	250714-250745	10	0.688
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP033323	Azospirillum brasilense strain Cd plasmid p5, complete sequence	101927-101958	10	0.688
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP033315	Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence	220293-220324	10	0.688
NC_011662_9	9.13\|2518832\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518832-2518863	32	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	632946-632977	10	0.688
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NZ_CP016593	Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence	44801-44832	10	0.688
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NC_017386	Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence	247983-248014	10	0.688
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NC_014621	Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence	215086-215117	10	0.688
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NZ_CP012909	Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence	44804-44835	10	0.688
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NZ_CP025016	Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence	105740-105771	10	0.688
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NZ_CP030763	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence	198669-198700	10	0.688
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	NZ_CP050088	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence	130385-130416	10	0.688
NC_011662_9	9.18\|2519137\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2519137-2519168	32	KX066068	Pseudomonas phage VSW-3, complete genome	26187-26218	10	0.688
NC_011662_9	9.29\|2519808\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2519808-2519839	32	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	106207-106238	10	0.688
NC_011662_9	9.31\|2519930\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2519930-2519961	32	NZ_CP016621	Microvirga ossetica strain V5/3m plasmid unnamed5, complete sequence	134543-134574	10	0.688
NC_011662_9	9.39\|2520418\|31\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520418-2520448	31	NZ_CP029358	Azospirillum sp. CFH 70021 plasmid unnamed3	365405-365435	10	0.677
NC_011662_9	9.43\|2520661\|33\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520661-2520693	33	NZ_CP015372	Pandoraea pnomenusa strain MCB032 plasmid unnamed 1, complete sequence	26288-26320	10	0.697
NC_011662_9	9.44\|2520723\|33\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520723-2520755	33	NZ_CP015372	Pandoraea pnomenusa strain MCB032 plasmid unnamed 1, complete sequence	26288-26320	10	0.697
NC_011662_9	9.46\|2520846\|32\|NC_011662\|CRISPRCasFinder,CRT,PILER-CR	2520846-2520877	32	NC_031279	Mycobacterium phage Bactobuster, complete genome	1307-1338	10	0.688
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NZ_CP015740	Shinella sp. HZN7 plasmid pShin-04, complete sequence	158825-158856	11	0.656
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	KY471269	Gordonia phage DinoDaryn, complete genome	29246-29277	11	0.656
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	KU998238	Gordonia phage Splinter, complete genome	29846-29877	11	0.656
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	MT553344	Gordonia phage TZGordon, complete genome	29161-29192	11	0.656
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	KY471268	Gordonia phage Huffy, complete genome	29246-29277	11	0.656
NC_011662_9	9.4\|2518283\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518283-2518314	32	NC_030911	Gordonia phage Vendetta, complete genome	29846-29877	11	0.656
NC_011662_9	9.8\|2518527\|32\|NC_011662\|PILER-CR,CRISPRCasFinder,CRT	2518527-2518558	32	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	2191671-2191702	11	0.656

1. spacer 9.35|2520174|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MT711888 (Pseudomonas phage Dolphis, complete genome) position: , mismatch: 4, identity: 0.875

cattccggcgtcggatagaactggtgcgactt	CRISPR spacer
ttctccggcgtcgggtagaactggtgcgactt	Protospacer
. .***********.*****************

2. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 5, identity: 0.844

ccaggcg-cagaacgcccggtcggcctcggcga	CRISPR spacer
-aaggcgccagaacgcgcgatcggcctcggcca	Protospacer
  ***** ******** **.*********** *

3. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 5, identity: 0.844

ccaggcg-cagaacgcccggtcggcctcggcga	CRISPR spacer
-aaggcgccagaacgcgcgatcggcctcggcca	Protospacer
  ***** ******** **.*********** *

4. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgccttgccgt--	Protospacer
******* ****************  .**.*

5. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
cccgacgacgtcgtcaccgccgccaccatcg	Protospacer
** . *****.******** ***********

6. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcgccgccgtcaccggcgcc-cggccgc	Protospacer
******* **************** * ..**

7. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgcccggccgt--	Protospacer
******* ****************  .**.*

8. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgcccggccgt--	Protospacer
******* ****************  .**.*

9. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgccttgccgt--	Protospacer
******* ****************  .**.*

10. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgcccggccgt--	Protospacer
******* ****************  .**.*

11. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgcccggccgt--	Protospacer
******* ****************  .**.*

12. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgcccggccgt--	Protospacer
******* ****************  .**.*

13. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgccttgccgt--	Protospacer
******* ****************  .**.*

14. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgcccggccgt--	Protospacer
******* ****************  .**.*

15. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021029 (Rhizobium sp. TAL182 plasmid pRetTAL182e, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccg--gcgccaccatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgcgcggccat--	Protospacer
******* ***********  **** .****

16. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 5, identity: 0.839

--ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gaccggtc--cgccgtcaccggcggcaccaccg	Protospacer
  ***.**  ************** *****.**

17. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 5, identity: 0.839

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatagccgccgtcaccggcgcccggccat--	Protospacer
***** * ****************  .****

18. spacer 9.10|2518649|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 6, identity: 0.812

tcgcgc-aggccgcgggcgatccacgtcgggcc	CRISPR spacer
-cgggcgaggccgcgggcgatccgcgccggcgc	Protospacer
 ** ** ****************.**.***  *

19. spacer 9.10|2518649|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 6, identity: 0.812

tcgcgc-aggccgcgggcgatccacgtcgggcc	CRISPR spacer
-cgggcgaggccgcgggcgatccgcgccggcgc	Protospacer
 ** ** ****************.**.***  *

20. spacer 9.10|2518649|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 6, identity: 0.812

tcgcgc-aggccgcgggcgatccacgtcgggcc	CRISPR spacer
-cgggcgaggccgcgggcgatccgcgccggcgc	Protospacer
 ** ** ****************.**.***  *

21. spacer 9.11|2518710|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MT889376 (Arthrobacter phage Phives, complete genome) position: , mismatch: 6, identity: 0.812

gtgccggcggtgtcgtgctggtgccaggcgcc	CRISPR spacer
gcttcggcggtgtcgtgctcgtgccagtcggc	Protospacer
*. .*************** ******* ** *

22. spacer 9.11|2518710|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MN908689 (Arthrobacter phage DrSierra, complete genome) position: , mismatch: 6, identity: 0.812

gtgccggcggtgtcgtgctggtgccaggcgcc	CRISPR spacer
gcttcggcggtgtcgtgctcgtgccagtcggc	Protospacer
*. .*************** ******* ** *

23. spacer 9.11|2518710|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 6, identity: 0.812

gtgccggcggtgtcgtgctggtgccaggcgcc	CRISPR spacer
gggtcggcggtgtggtgctggtgcccggcacg	Protospacer
* *.********* *********** ***.*

24. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039918 (Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626a, complete sequence) position: , mismatch: 6, identity: 0.812

ctgtcgcg---gcgcttgtcggcctcgtcttccac	CRISPR spacer
---tcgcgtacgcgcttgtcggcgtcatcttccat	Protospacer
   *****   ************ **.*******.

25. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039905 (Agrobacterium tumefaciens strain CFBP6623 plasmid pAtCFBP6623a, complete sequence) position: , mismatch: 6, identity: 0.812

ctgtcgcg---gcgcttgtcggcctcgtcttccac	CRISPR spacer
---tcgcgtacgcgcttgtcggcgtcatcttccat	Protospacer
   *****   ************ **.*******.

26. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039909 (Agrobacterium tumefaciens strain CFBP6624 plasmid pAtCFBP6624, complete sequence) position: , mismatch: 6, identity: 0.812

ctgtcgcg---gcgcttgtcggcctcgtcttccac	CRISPR spacer
---tcgcgtacgcgcttgtcggcgtcatcttccat	Protospacer
   *****   ************ **.*******.

27. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038636 (Cupriavidus oxalaticus strain X32 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

ttgccgatgatggcgaccgtctgctcgagcga---	CRISPR spacer
ttgccgatgatagcgagcgtctgc---agcaattc	Protospacer
***********.**** *******   ***.*

28. spacer 9.20|2519259|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010270 (Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence) position: , mismatch: 6, identity: 0.812

gtccacgaaaaaatacctatggattgcaatca	CRISPR spacer
atccacaaaaaaatacctatggatagagatga	Protospacer
.*****.***************** * .** *

29. spacer 9.29|2519808|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

tcagccag-gaacagcgcgacagtctgcgccgc	CRISPR spacer
-gaaccagcaaacagcgcaacagtcagcgccgc	Protospacer
  *.**** .********.****** *******

30. spacer 9.35|2520174|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 6, identity: 0.812

cattccggcgtcggatagaactggtgcgactt	CRISPR spacer
ggggccggcgtgggatagaactggtgagactt	Protospacer
 .  ******* ************** *****

31. spacer 9.35|2520174|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 6, identity: 0.812

cattccggcgtcggatagaactggtgcgactt	CRISPR spacer
ggggccggggtgggatagaactggtgcgactt	Protospacer
 .  **** ** ********************

32. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcaccggcgccatcgtaa	Protospacer
.******.*****************.*.* .

33. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
acgatcaacgccgtcaccggcggcaccgtga	Protospacer
 *****.*************** ****.* .

34. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042265 (Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
cccggcgacgccgtcaccggcggcaccgtca	Protospacer
** . ***************** ****.**.

35. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcgccgccgtcaccggcg-cgcggccgt	Protospacer
******* ************** *.* ..**

36. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134454 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 12, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ctcatcggcgccggcaccggcgccaccacgg	Protospacer
*. ****.***** **************. *

37. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcgccgccgtcaccggcg-cgcggccgt	Protospacer
******* ************** *.* ..**

38. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013515 (Rhizobium sp. N1314 plasmid pRspN1314d, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcgccgccgtcaccggcg-cgcggccgt	Protospacer
******* ************** *.* ..**

39. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013605 (Rhizobium sp. N731 plasmid pRspN731d, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcgccgccgtcaccggcg-cgcggccgt	Protospacer
******* ************** *.* ..**

40. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MF324912 (Mycobacterium phage Phrank, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
acgatcgacgccgacaccggcgccccgctgg	Protospacer
 ************ ********** *  * *

41. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MT723940 (Mycobacterium phage Ellie, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
acgatcgacgccgacaccggcgcc-ccgctgt	Protospacer
 ************ ********** **...*

42. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MF140398 (Mycobacterium phage Amohnition, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
acgatcgacgccgacaccggcgcc-ccgctgt	Protospacer
 ************ ********** **...*

43. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MF324915 (Mycobacterium phage Amgine, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
acgatcgacgccgacaccggcgcc-ccgctgt	Protospacer
 ************ ********** **...*

44. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MF140406 (Mycobacterium phage DarthP, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
acgatcgacgccgacaccggcgcc-ccgctgt	Protospacer
 ************ ********** **...*

45. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MN369762 (Mycobacterium phage Bryler, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
acgatcgacgccgacaccggcgccccgctgg	Protospacer
 ************ ********** *  * *

46. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MH910038 (Mycobacterium phage LeMond, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
acgatcgacgccgacaccggcgcc-ccgctgt	Protospacer
 ************ ********** **...*

47. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MN234199 (Mycobacterium phage Ekdilam, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
acgatcgacgccgacaccggcgcc-ccgctgt	Protospacer
 ************ ********** **...*

48. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MT310859 (Mycobacterium phage MarkPhew, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
acgatcgacgccgacaccggcgcc-ccgctgt	Protospacer
 ************ ********** **...*

49. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MK460246 (Mycobacterium phage Nibb, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
acgatcgacgccgacaccggcgcc-ccgctgt	Protospacer
 ************ ********** **...*

50. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MH910039 (Mycobacterium phage Oscar, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
acgatcgacgccgacaccggcgcc-ccgctgt	Protospacer
 ************ ********** **...*

51. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MF324913 (Mycobacterium phage Cain, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
acgatcgacgccgacaccggcgccccgctgg	Protospacer
 ************ ********** *  * *

52. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MF324911 (Mycobacterium phage SirPhilip, complete genome) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
acgatcgacgccgacaccggcgcc-ccgctgt	Protospacer
 ************ ********** **...*

53. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgattgccgccgtcaccggcgccttgccgt--	Protospacer
*****.* ****************  .**.*

54. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgattgccgccgtcaccggcgccttgccgt--	Protospacer
*****.* ****************  .**.*

55. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_009427 (Novosphingobium aromaticivorans DSM 12444 plasmid pNL2, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gccatcgacgccgtcaccggggccagccttg	Protospacer
 * ***************** **** * *.*

56. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgttcaacgccgtcaccggcgcgatgaacg	Protospacer
*** **.**************** *. * **

57. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgattgccgccgtcaccggcgccttgccgt--	Protospacer
*****.* ****************  .**.*

58. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatggccgccgtcaccggcgcccggccgt--	Protospacer
***** * ****************  .**.*

59. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgattgccgccgtcaccggcgccttgccgt--	Protospacer
*****.* ****************  .**.*

60. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 6, identity: 0.806

-ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gacga-cgacgccgtcaccgtggccaccacca	Protospacer
  *** **************  *******.*.

61. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgattgccgccgtcaccggcgccttgccgt--	Protospacer
*****.* ****************  .**.*

62. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatcgctgccgtcaccggcgccttgccgt--	Protospacer
******* .***************  .**.*

63. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgattgccgccgtcaccggcgccttgccgt--	Protospacer
*****.* ****************  .**.*

64. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgattgccgccgtcaccggcgccttgccgt--	Protospacer
*****.* ****************  .**.*

65. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgattgccgccgtcaccggcgccttgccgt--	Protospacer
*****.* ****************  .**.*

66. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022565 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK01, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgatcgccgccgtcaccggtgccttgccgt--	Protospacer
******* ************.***  .**.*

67. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 6, identity: 0.806

ccgatcgacgccgtcaccggcgcc--accatcg	CRISPR spacer
ccgattgccgccgtcaccggcgccttgccgt--	Protospacer
*****.* ****************  .**.*

68. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 6, identity: 0.806

-ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
accga-cgacgccggcaccggcgacaccagaa	Protospacer
 **** ******** ******** *****  .

69. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 6, identity: 0.806

-ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ttcggtc-acgccgtcgccggcgccacgatca	Protospacer
 .**.** ********.********** ***.

70. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 6, identity: 0.806

-ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
accga-cgacgccggcaccggcgacaccagaa	Protospacer
 **** ******** ******** *****  .

71. spacer 9.41|2520539|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035512 (Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence) position: , mismatch: 6, identity: 0.812

ctccactcgtgtgtacgggatgcc-cgttccac	CRISPR spacer
ttccactcgtctgtaggggatgccgcgagcca-	Protospacer
.********* **** ******** **  ***

72. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006370 (Aureimonas sp. AU20 plasmid pAU20c, complete sequence) position: , mismatch: 7, identity: 0.781

ccaggcgcagaacgcccggtcggcctcggcga	CRISPR spacer
gccggcgcagagcgcccggtcgccctcgccag	Protospacer
 * ********.********** ***** *..

73. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 7, identity: 0.781

ccagg---cgcagaacgcccggtcggcctcggcga	CRISPR spacer
---ggcctcccagaacgcccggtaggcctcgccgt	Protospacer
   **   * ************* ******* **

74. spacer 9.2|2518161|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_008741 (Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence) position: , mismatch: 7, identity: 0.781

tcgaacacgtaagccatgccgccgcactgctg	CRISPR spacer
gcaagggcgaaggccatgccgccgcactgctg	Protospacer
 *.*. .** *.********************

75. spacer 9.2|2518161|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgaacacgtaagccatgccg-ccgcactgctg	CRISPR spacer
tcgtagacgtaagccatgccgcccgtcatgcc-	Protospacer
*** * *************** ***.  ***.

76. spacer 9.3|2518222|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031358 (Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

tcgccctg----ctccatgctctcgaatgcgagcga	CRISPR spacer
----catggggtctgcatgctctcgaatgagagcga	Protospacer
    * **    ** ************** ******

77. spacer 9.3|2518222|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MN694468 (Marine virus AFVG_250M452, complete genome) position: , mismatch: 7, identity: 0.781

tcgccctgctccatgctctcgaatgcgagcga	CRISPR spacer
tcggtctgctccatgctctcgaagctgatgga	Protospacer
*** .******************  .**  **

78. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY270855 (Pseudomonas putida strain 12969 plasmid p12969-2, complete sequence) position: , mismatch: 7, identity: 0.781

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
tggttgatcgtgatcggctcaccggtttcgcg	Protospacer
* ******************..***. ** .*

79. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022563 (Pseudomonas monteilii strain B5 plasmid pSH5-1, complete sequence) position: , mismatch: 7, identity: 0.781

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
tggttgatcgtgatcggctcaccggtttcgcg	Protospacer
* ******************..***. ** .*

80. spacer 9.5|2518344|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_022001 (Streptomyces collinus Tu 365 plasmid pSCO1, complete sequence) position: , mismatch: 7, identity: 0.781

ctcgaagaagcgccgccaggcgacaagcccgt	CRISPR spacer
cgccgagttgcgccgtcaggcgacaagccggt	Protospacer
* * .**  ******.************* **

81. spacer 9.6|2518405|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MN450150 (Pantoea phage vB_PagP-SK1, complete genome) position: , mismatch: 7, identity: 0.781

gcgaccttctcagcgtcatacaggccgtccgt	CRISPR spacer
tcaaccttctcagcgtcatacagaccatcgtc	Protospacer
 *.********************.**.**  .

82. spacer 9.6|2518405|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to HQ728265 (Erwinia phage vB_EamP-L1, complete genome) position: , mismatch: 7, identity: 0.781

gcgaccttctcagcgtcatacaggccgtccgt	CRISPR spacer
tcaaccttctcagcatcatacaggccatcgtc	Protospacer
 *.***********.***********.**  .

83. spacer 9.6|2518405|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gcgaccttctcagcgtcatacaggccgtccgt	CRISPR spacer
gcgaccttttcagtgtcatacagggcaacaat	Protospacer
********.****.********** *. * .*

84. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.781

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgtccgcgccgtgctcgacgatccggccgccg	Protospacer
 *  **************.********  * *

85. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010990 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-1, complete sequence) position: , mismatch: 7, identity: 0.781

agggcgcgccgtgctcgatgatccgg-cgtcgg	CRISPR spacer
gctgcgcgccgagctcgacgatccggacatcg-	Protospacer
.  ******** ******.******* *.***

86. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 7, identity: 0.781

agggcgcgccgtgctcgatgatccgg--cgtcgg	CRISPR spacer
aatgcgcgccgaggtcgatgatccggtccgcc--	Protospacer
*. ******** * ************  **.*

87. spacer 9.10|2518649|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020695 (Sulfitobacter sp. D7 plasmid p1SUD7, complete sequence) position: , mismatch: 7, identity: 0.781

tcgcgcaggccgcgggcgatccacgtcgggcc	CRISPR spacer
tcgcgcagggcgcgggcgatccaccaatgcgc	Protospacer
********* **************    *  *

88. spacer 9.11|2518710|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039918 (Agrobacterium tumefaciens strain CFBP6626 plasmid pAtCFBP6626a, complete sequence) position: , mismatch: 7, identity: 0.781

gtgccggcggtgtcgtgctggtgccaggcgcc	CRISPR spacer
ttgccgccggtgtcgcgctggtgccggaagcg	Protospacer
 ***** ********.*********.*. **

89. spacer 9.11|2518710|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR723676 (Rhizobium sp. TCK plasmid 2) position: , mismatch: 7, identity: 0.781

gtgccggcggtgtcgtgctggtgccaggcgcc	CRISPR spacer
ttgccgccggtgtcgcgctggtgccggaagcg	Protospacer
 ***** ********.*********.*. **

90. spacer 9.11|2518710|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

gtgccggcggtgtcgtgctggt--gccaggcgcc	CRISPR spacer
gtgccgccggtgtggtgctggtgggctggccg--	Protospacer
****** ****** ********  **..* **

91. spacer 9.12|2518771|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 7, identity: 0.781

tcggcgacgaagttccggtaggtcgcgcccgg	CRISPR spacer
tcggcggcgaagttgcggtaggtcctggcgtg	Protospacer
******.******* ********* .* *  *

92. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006988 (Rhizobium sp. IE4771 plasmid pRetIE4771b, complete sequence) position: , mismatch: 7, identity: 0.781

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
tcgccgcggcgctcgtcggcatcgtcttcctg	Protospacer
..*.*********.****** *********

93. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040642 (Agrobacterium sp. T29 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
ttgcctatgcgcttgtcggcatcatcttccac	Protospacer
.**.*   ************ **.********

94. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 7, identity: 0.781

ctgtcgcg---gcgcttgtcggcctcgtcttccac	CRISPR spacer
---tcgcatacgcgcttgtcggcgtggtcttccat	Protospacer
   ****.   ************ * ********.

95. spacer 9.14|2518893|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MH399779 (Microbacterium phage Jacko, complete genome) position: , mismatch: 7, identity: 0.781

gcgggaagggcgcgatagatctgcgcagcgcg	CRISPR spacer
tggggatgggcgcgatggatctgcgcatcctg	Protospacer
  **** *********.********** * .*

96. spacer 9.14|2518893|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011928 (Labrenzia sp. CP4 plasmid pBCL1, complete sequence) position: , mismatch: 7, identity: 0.781

gcgggaagggcgcgatagatctgcgcagcgcg	CRISPR spacer
gcgacgcaggcgcgatagatctgcgcaccacg	Protospacer
***. . .******************* *.**

97. spacer 9.16|2519015|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 7, identity: 0.781

ttgagttgctcgatcgtggcggcctgaacgac	CRISPR spacer
gcaagttcctcgctcgtggcggcctgaaccag	Protospacer
 ..**** **** **************** *

98. spacer 9.16|2519015|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.781

ttgagttgctcgatcgtggcggcctgaacgac---	CRISPR spacer
ttgagttgctcgaaggtggcggc---gacggccgg	Protospacer
*************  ********   .***.*

99. spacer 9.16|2519015|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.781

ttgagttgctcgatcgtggcggcctgaacgac---	CRISPR spacer
ttgagttgctcgaaggtggcggc---gacggccgg	Protospacer
*************  ********   .***.*

100. spacer 9.22|2519381|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019604 (Croceicoccus marinus strain E4A9 plasmid pCME4A9II, complete sequence) position: , mismatch: 7, identity: 0.781

gagcccgggcggggggattgcactgtttgccg	CRISPR spacer
gatcaagatcggtgggattgctctgtttgccg	Protospacer
** *  *. *** ******** **********

101. spacer 9.24|2519503|32|NC_011662|CRISPRCasFinder,CRT matches to NC_013545 (Sinorhizobium meliloti plasmid pSmeSM11a, complete sequence) position: , mismatch: 7, identity: 0.781

tggatcgggtcttcgggcattccgacctcaac	CRISPR spacer
tgagccgggtcttcgggaactccgacctcagt	Protospacer
**...************ *.**********..

102. spacer 9.24|2519503|32|NC_011662|CRISPRCasFinder,CRT matches to NZ_CP021821 (Sinorhizobium meliloti strain M162 plasmid accessoryA, complete sequence) position: , mismatch: 7, identity: 0.781

tggatcgggtcttcgggcattccgacctcaac	CRISPR spacer
tgagccgggtcttcgggaactccgacctcagt	Protospacer
**...************ *.**********..

103. spacer 9.24|2519503|32|NC_011662|CRISPRCasFinder,CRT matches to NZ_CP021817 (Sinorhizobium meliloti strain M270 plasmid accessoryC, complete sequence) position: , mismatch: 7, identity: 0.781

tggatcgggtcttcgggcattccgacctcaac	CRISPR spacer
tgagccgggtcttcgggaactccgacctcagt	Protospacer
**...************ *.**********..

104. spacer 9.24|2519503|32|NC_011662|CRISPRCasFinder,CRT matches to NZ_CP021215 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11c, complete sequence) position: , mismatch: 7, identity: 0.781

tggatcgggtcttcgggcattccgacctcaac	CRISPR spacer
tgagccgggtcttcgggaactccgacctcagt	Protospacer
**...************ *.**********..

105. spacer 9.35|2520174|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

cattccggcgtcggatagaactggtgcgactt	CRISPR spacer
ttgacaggggtcggatagaactggtgagactt	Protospacer
.   * ** ***************** *****

106. spacer 9.35|2520174|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR594668 (Variovorax sp. SRS16 plasmid 3) position: , mismatch: 7, identity: 0.781

cattccggcgtcggatagaactggtgcgactt	CRISPR spacer
cgcgcaggggtcggatagaactggtgggactg	Protospacer
*.. * ** ***************** ****

107. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgccttgccgg	Protospacer
******* **************** .  . *

108. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgccttgccgg	Protospacer
******* **************** .  . *

109. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgccttgccgg	Protospacer
******* **************** .  . *

110. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016287 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcggcgccgtcatcggcg-cgctgacgc	Protospacer
*******.********.***** *.*.. **

111. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054022 (Rhizobium sp. JKLM12A2 plasmid pPR12A201, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcggcgccgtcatcggcg-cgctgacgc	Protospacer
*******.********.***** *.*.. **

112. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgccttgccgg	Protospacer
******* **************** .  . *

113. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcggcgccgtcatcggcg-cgctgacgc	Protospacer
*******.********.***** *.*.. **

114. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgatcgccgcagtcaccggcgccttgttct	Protospacer
******* *** ************ .  **

115. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_016588 (Azospirillum lipoferum 4B plasmid AZO_p6, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gagatcgacgccatcaccggcaccaccgaca	Protospacer
  **********.********.*****. *.

116. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013856 (Pseudonocardia sp. HH130630-07 plasmid pLS2-2, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcggtcgacgccgtcaccggcgccggagacg	Protospacer
 **.********************.  . **

117. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019938 (Ketogulonicigenium robustum strain SPU_B003 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ctctacgaccccgccaccggcgccaccatcc	Protospacer
*.   **** ***.****************

118. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009405 (Mycobacterium avium subsp. hominissuis strain OCU464 plasmid p78K, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggggacatcgccgtcaccggcggcaccatcg	Protospacer
  *. *. ************** ********

119. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

120. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to CP007645 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803d, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

121. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gagatcgacgccatcaccggcaccaccgaca	Protospacer
  **********.********.*****. *.

122. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039644 (Azospirillum sp. TSA2s plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gagatcgacgccatcaccggcaccaccgaca	Protospacer
  **********.********.*****. *.

123. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MF324912 (Mycobacterium phage Phrank, complete genome) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgatcgacgccagcaccggcgcaaacgacc	Protospacer
************. ********* * *. *

124. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MN369762 (Mycobacterium phage Bryler, complete genome) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgatcgacgccagcaccggcgcaaacgacc	Protospacer
************. ********* * *. *

125. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MF324913 (Mycobacterium phage Cain, complete genome) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgatcgacgccagcaccggcgcaaacgacc	Protospacer
************. ********* * *. *

126. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050095 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b1, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

127. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050098 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b4, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcggcgccgtcatcggcg-cgctgacgc	Protospacer
*******.********.***** *.*.. **

128. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050104 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b2, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcggcgccgtcatcggcg-cgctgacgc	Protospacer
*******.********.***** *.*.. **

129. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_008381 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL10, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

130. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to CP054928 (Streptomyces fulvissimus strain NA06532 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gccgcccacgccgtcaccggggtcaccatcg	Protospacer
 * ..* ************* *.********

131. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134451 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 9, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcgacgccgtcgccgccgccaagaagg	Protospacer
.**************.*** *****  *  *

132. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020897 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

133. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020897 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

134. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053440 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eF, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcggcgccgtcatcggcg-cgctgacgc	Protospacer
*******.********.***** *.*.. **

135. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013631 (Rhizobium sp. N324 plasmid pRspN324a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

136. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013524 (Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcggcgccgtcatcggcgccatcgtga	Protospacer
 ******.********.********.*.* .

137. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013524 (Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

138. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

139. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

140. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025507 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvA, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcggcgccgtcatcggcg-cgctgacgc	Protospacer
*******.********.***** *.*.. **

141. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gtggtccgcgccgtcaccggcgagaccatcg	Protospacer
 .*.** .**************  *******

142. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

143. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

144. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

145. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

146. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

147. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

148. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

149. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

150. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013528 (Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

151. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

152. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

153. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013538 (Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

154. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013538 (Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

155. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013539 (Rhizobium phaseoli strain R630 plasmid pRphaR630b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tatatcgacgccgtcaccgacgccgcccttg	Protospacer
.  ****************.****.** *.*

156. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

157. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

158. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

159. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

160. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ctgctcgacgccgtcaccgtcggcaccgagg	Protospacer
*.* *************** ** ****.  *

161. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050109 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b2, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcggcgccgtcatcggcg-cgctgacgc	Protospacer
*******.********.***** *.*.. **

162. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gtggtccgcgccgtcaccggcgagaccatcg	Protospacer
 .*.** .**************  *******

163. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013581 (Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

164. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

165. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

166. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gccatcgccgccgtcaccggctccaccggcc	Protospacer
 * **** ************* *****. *

167. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

168. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgatcgccgcagtcaccggcgccgtgttct	Protospacer
******* *** ************..  **

169. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tcgatcggcgccgtcatcggcgccatcgtga	Protospacer
.******.********.********.*.* .

170. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020701 (Streptomyces tsukubensis strain NRRL 18488 plasmid pSTS1, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
accgcccacgccctcaccggcgtcaccatcg	Protospacer
 * ..* ***** *********.********

171. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcggcgccgtcatcggcg-cgctgacgc	Protospacer
*******.********.***** *.*.. **

172. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032327 (Azospirillum brasilense strain MTCC4035 plasmid p6, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
cgtctggccgccgccaccggcgccaccgtcg	Protospacer
*   * * *****.*************.***

173. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcggcgccgtcatcggcg-cgctgacgc	Protospacer
*******.********.***** *.*.. **

174. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgc-----caccatcg	CRISPR spacer
ccgatcggcgccgtcatcggcgcgctgacac-----	Protospacer
*******.********.******     ***

175. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015738 (Shinella sp. HZN7 plasmid pShin-02, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcggcgccgtcatcggcg-cgctgacgc	Protospacer
*******.********.***** *.*.. **

176. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052758 (Cellulosimicrobium sp. BI34T plasmid pCPRO01, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcgacgccggcaccggcaccggctacg	Protospacer
 ************ *******.**. *  **

177. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007798 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p5, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
cgtctggccgccgccaccggcgccaccgtcg	Protospacer
*   * * *****.*************.***

178. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcgaagtcgtcaccggcgcga-tgtggc	Protospacer
******** *.************ * ..* *

179. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcgaagtcgtcaccggcgcga-tgtggc	Protospacer
******** *.************ * ..* *

180. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcgaagtcgtcaccggcgcga-tgtggc	Protospacer
******** *.************ * ..* *

181. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 7, identity: 0.774

ccgatcgacgccgtcaccggcgccaccatcg-	CRISPR spacer
ccgatcgaagtcgtcaccggcgcga-tgtggc	Protospacer
******** *.************ * ..* *

182. spacer 9.46|2520846|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018234 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed6, complete sequence) position: , mismatch: 7, identity: 0.781

-cagtactttggcctcaccacgcccgagctgca	CRISPR spacer
gcagggc-ttggcctcaccaagaccgagctgat	Protospacer
 *** .* ************ * ********

183. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccaggcgcagaacgcccggtcggcctcggcga	CRISPR spacer
ccaggcgcagaacgcgcggtcggtgtccagcc	Protospacer
*************** *******. ** .

184. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594670 (Variovorax sp. SRS16 plasmid 5) position: , mismatch: 8, identity: 0.75

ccaggcgcagaacgcccggtcggcctcggcga	CRISPR spacer
ccaggcgcaaaacacccggtcgggggccgaca	Protospacer
*********.***.*********   * *  *

185. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015089 (Pelagibaca abyssi strain JLT2014 plasmid pPABY5, complete sequence) position: , mismatch: 8, identity: 0.75

ccaggcgcagaacgcccggtcggcctcggcga	CRISPR spacer
cgcgaagcagaacgcccgtccggcctcggtgc	Protospacer
*  *. ************ .*********.*

186. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_005793 (Achromobacter denitrificans plasmid pEST4011, complete sequence) position: , mismatch: 8, identity: 0.75

ccaggcgcagaacgcccggtcggcctcggcga	CRISPR spacer
ccaggcgcaaaacacccggtcgggggccgaca	Protospacer
*********.***.*********   * *  *

187. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043477 (Xanthomonas hyacinthi strain CFBP 1156 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccaggcgcagaacgcccggtcggcctcggcga	CRISPR spacer
ccaggcgcaaaacacccggtcgggggccgaca	Protospacer
*********.***.*********   * *  *

188. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_019378 (Burkholderia cepacia plasmid pIJB1, complete sequence) position: , mismatch: 8, identity: 0.75

ccaggcgcagaacgcccggtcggcctcggcga	CRISPR spacer
ccaggcgcaaaacacccggtcgggggccgaca	Protospacer
*********.***.*********   * *  *

189. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594674 (Variovorax sp. PBL-E5 plasmid 4) position: , mismatch: 8, identity: 0.75

ccaggcgcagaacgcccggtcggcctcggcga	CRISPR spacer
ccaggcgcaaaacacccggtcgggggccgaca	Protospacer
*********.***.*********   * *  *

190. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594665 (Variovorax sp. RA8 plasmid 4) position: , mismatch: 8, identity: 0.75

ccaggcgcagaacgcccggtcggcctcggcga	CRISPR spacer
ccaggcgcaaaacacccggtcgggggccgaca	Protospacer
*********.***.*********   * *  *

191. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to AM419438 (Archaeal BJ1 virus complete genome) position: , mismatch: 8, identity: 0.75

ccaggcgcagaacgcccggtcggcctcggcga	CRISPR spacer
cgagagatcgaacgcccggtcgccctcggtga	Protospacer
* **. .. ************* ******.**

192. spacer 9.1|2518100|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_008695 (Archaeal BJ1 virus, complete genome) position: , mismatch: 8, identity: 0.75

ccaggcgcagaacgcccggtcggcctcggcga	CRISPR spacer
cgagagatcgaacgcccggtcgccctcggtga	Protospacer
* **. .. ************* ******.**

193. spacer 9.3|2518222|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to KM083128 (Mycobacterium phage Sparky, complete genome) position: , mismatch: 8, identity: 0.75

tcgccctgctccatgctctcgaatgcgagcga	CRISPR spacer
acaccctgcgccatgctctggaatgcgccggg	Protospacer
 *.****** ********* *******   *.

194. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 8, identity: 0.75

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
cccctgatcgtgatcggcgcgtcggcgggcgg	Protospacer
.* .************** ********  . *

195. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MT310854 (Streptomyces phage CricKo, complete genome) position: , mismatch: 8, identity: 0.75

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
tcgttgaaggtgatcggctcgtccgtgaagag	Protospacer
*******  ************** *.*    *

196. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MH155877 (Streptomyces phage Rainydai, complete genome) position: , mismatch: 8, identity: 0.75

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
tcgttgaaggtgatcggctcgtccgtgaagag	Protospacer
*******  ************** *.*    *

197. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MT657340 (Streptomyces phage Thiqqums, complete genome) position: , mismatch: 8, identity: 0.75

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
tcgttgaaggtgatcggctcgtccgtgaagag	Protospacer
*******  ************** *.*    *

198. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MH155880 (Streptomyces phage SendItCS, complete genome) position: , mismatch: 8, identity: 0.75

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
tcgttgaaggtgatcggctcgtccgtgaagag	Protospacer
*******  ************** *.*    *

199. spacer 9.5|2518344|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ctcgaagaagcgccgccaggcgacaagcccgt-----	CRISPR spacer
gtcgaggaagcgccgccaggcca-----ccgtgacca	Protospacer
 ****.*************** *     ****

200. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
ccgcttcgccctgatcgatgatccggcgtcgc	Protospacer
  * . **** ** *****************

201. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041223 (Porphyrobacter sp. YT40 plasmid pYT40, complete sequence) position: , mismatch: 8, identity: 0.75

agggcgcgccgtgctcgatgatccggcgtcgg--	CRISPR spacer
ccggcgcgacgtgttcgatgatccg--gacgatc	Protospacer
  ****** ****.***********  * **.

202. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134447 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 5, complete sequence) position: , mismatch: 8, identity: 0.75

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgggcgcgccctgctcgatgagcccgagggtg	Protospacer
 ********* ********** ** * *   *

203. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.75

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
acggcgggccgtgctcgacgatccgccctttt	Protospacer
* **** ***********.****** * *.

204. spacer 9.9|2518588|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MH536819 (Gordonia phage Fury, complete genome) position: , mismatch: 8, identity: 0.75

ctgctcgaggcctgacatggacaagatcacag	CRISPR spacer
ccccaggaggcctgacatggccgagatcacca	Protospacer
*. *  ************** *.******* .

205. spacer 9.9|2518588|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MH576960 (Gordonia phage Pleakley, complete genome) position: , mismatch: 8, identity: 0.75

ctgctcgaggcctgacatggacaagatcacag	CRISPR spacer
ccccaggaggcctgacatggccgagatcacca	Protospacer
*. *  ************** *.******* .

206. spacer 9.10|2518649|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 8, identity: 0.75

tcgcgcaggccgcgggcgatccacgtcgggcc	CRISPR spacer
acggtcgagccgcggccgatccgcgtcgggct	Protospacer
 **  *..******* ******.********.

207. spacer 9.11|2518710|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MF185718 (Arthrobacter phage Colucci, complete genome) position: , mismatch: 8, identity: 0.75

gtgccggcggtgtcgtgctggtgccaggcgcc	CRISPR spacer
atggtttcggtgccgtgctggtgccagccgct	Protospacer
.** .  *****.************** ***.

208. spacer 9.11|2518710|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MN234195 (Mycobacterium phage Xula, complete genome) position: , mismatch: 8, identity: 0.75

gtgccggcggtgtcgtgctggtgccaggcgcc	CRISPR spacer
tggcccttggtgtcgtgcttgtgccagacgcg	Protospacer
  ***  .*********** *******.***

209. spacer 9.11|2518710|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to HQ728524 (Mycobacterium phage Wee, complete genome) position: , mismatch: 8, identity: 0.75

gtgccggcggtgtcgtgctggtgccaggcgcc	CRISPR spacer
tggcccttggtgtcgtgcttgtgccagacgcg	Protospacer
  ***  .*********** *******.***

210. spacer 9.11|2518710|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_025433 (Mycobacteriophage Taj, complete genome) position: , mismatch: 8, identity: 0.75

gtgccggcggtgtcgtgctggtgccaggcgcc	CRISPR spacer
tggcccttggtgtcgtgcttgtgccagacgcg	Protospacer
  ***  .*********** *******.***

211. spacer 9.12|2518771|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 8, identity: 0.75

tcggcgacgaagttccggtaggtcgcgcccgg	CRISPR spacer
ccggcggcgaagttgcggtaggtcttcgccga	Protospacer
.*****.******* ********* .  ***.

212. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030761 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
tcgcctacgcgcttgtcggcgtcgtcttccat	Protospacer
..*.*   ************ **********.

213. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022666 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR1, complete sequence) position: , mismatch: 8, identity: 0.75

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
tcgcctacgcgcttgtcggcgtcgtcttccat	Protospacer
..*.*   ************ **********.

214. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050086 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b7, complete sequence) position: , mismatch: 8, identity: 0.75

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
tcgcctacgcgcttgtcggcgtcgtcttccat	Protospacer
..*.*   ************ **********.

215. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021214 (Sinorhizobium meliloti RU11/001 plasmid pSmeRU11b, complete sequence) position: , mismatch: 8, identity: 0.75

ctgtcg--cggcgcttgtcggcctcgtcttccac	CRISPR spacer
--ggcggccggcgcttgtcggcatcctcttcgtg	Protospacer
  * **  ************** ** *****

216. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to JN698995 (Mycobacterium phage Dori, complete genome) position: , mismatch: 8, identity: 0.75

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
acgtcgcggtgcttgccggcctcgtgcgcctc	Protospacer
 .*******.*****.********* . ** *

217. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013109 (Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence) position: , mismatch: 8, identity: 0.75

----ttgccgatgatggcgaccgtctgctcgagcga	CRISPR spacer
actattg----tgatggcgagcgtccgctcgagcag	Protospacer
    ***    ********* ****.********..

218. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 8, identity: 0.75

----ttgccgatgatggcgaccgtctgctcgagcga	CRISPR spacer
actattg----tgatggcgagcgtccgctcgagcag	Protospacer
    ***    ********* ****.********..

219. spacer 9.24|2519503|32|NC_011662|CRISPRCasFinder,CRT matches to NZ_CP049029 (Fluviibacterium aquatile strain SC52 plasmid pSC52_1, complete sequence) position: , mismatch: 8, identity: 0.75

tggatcgggtcttcgggcattccgacctcaac	CRISPR spacer
tcgatgtggtcttcgggcattccgacaatcag	Protospacer
* ***  *******************  . *

220. spacer 9.29|2519808|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_007961 (Nitrobacter hamburgensis X14 plasmid 3, complete sequence) position: , mismatch: 8, identity: 0.75

tcagccaggaacagcgcgacagtctgcgccgc	CRISPR spacer
ctcgcgccgaacagcgcgacaatctgcgtcgc	Protospacer
.. **   *************.******.***

221. spacer 9.29|2519808|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035513 (Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence) position: , mismatch: 8, identity: 0.75

tcagccaggaacagcgcgacagtctgcgccgc	CRISPR spacer
cgatcgacgagcagcgcgaccgtctgcgccgg	Protospacer
. * * * **.********* **********

222. spacer 9.31|2519930|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ctgagccgccaggctgtcatcaatgacgacct	CRISPR spacer
ttggtttgccaggccgtcataaatgacgaccc	Protospacer
.**. ..*******.***** **********.

223. spacer 9.35|2520174|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MT104473 (Pseudomonas phage MR13, complete genome) position: , mismatch: 8, identity: 0.75

cattccggcgtcggatagaactggtgcgactt	CRISPR spacer
ttctcgggggtcggatagaactggtgagcttt	Protospacer
. .** ** ***************** * .**

224. spacer 9.35|2520174|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MT104475 (Pseudomonas phage MR15, complete genome) position: , mismatch: 8, identity: 0.75

cattccggcgtcggatagaactggtgcgactt	CRISPR spacer
ttctcgggggtcggatagaactggtgagcttt	Protospacer
. .** ** ***************** * .**

225. spacer 9.35|2520174|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to KJ507100 (Pseudomonas phage phiPSA1, complete genome) position: , mismatch: 8, identity: 0.75

cattccggcgtcggatagaactggtgcgactt	CRISPR spacer
ttctcgggggtcggatagaactggtgagcttt	Protospacer
. .** ** ***************** * .**

226. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
acaacgtccgccgccaccgccgccaccatcg	Protospacer
 *.*.   *****.***** ***********

227. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgatcgccgccgtcaccggcgccttgcctt	Protospacer
******* **************** .  ..

228. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013529 (Rhizobium phaseoli strain R723 plasmid pRphaR723b, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcgtcgccgtcaccggcgccgtcgatt	Protospacer
 ****** ****************..*. .

229. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013582 (Rhizobium phaseoli strain N261 plasmid pRphaN261b, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcgtcgccgtcaccggcgccgtcgatt	Protospacer
 ****** ****************..*. .

230. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022578 (Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gagggtgacgccgtcaccggcgcaaccgtca	Protospacer
  *. .***************** ***.**.

231. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP033036 (Agrobacterium fabrum strain 12D13 plasmid pAt12D13a, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
cggatcgccgccgtcagcggcgccacttaac	Protospacer
* ***** ******** *********.

232. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010861 (Marinovum algicola DG 898 plasmid pMaD6, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
acaggtgatgccgtcaccggcgccacgatca	Protospacer
 *.. .**.***************** ***.

233. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to GQ919031 (Streptomyces phage ZL12, complete genome) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gccgcgaacgcggtcaccgccgccaccatcg	Protospacer
 * .. .**** ******* ***********

234. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010956 (Sphingobium sp. YBL2 plasmid 2pYBL2-2, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcgacgccggcgccggcgccggcgctg	Protospacer
 ************ *.********. *...*

235. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039696 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK21, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcgacgccggcgccggcgccggcgctg	Protospacer
 ************ *.********. *...*

236. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_012523 (Rhodococcus opacus B4 plasmid pKNR, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcgacaccgtcaccgccgccggccctg	Protospacer
 ********.********* ****. * ..*

237. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
aagctcggcgccatcaccggcgccaccgacc	Protospacer
  * ***.****.**************. *

238. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_017959 (Tistrella mobilis KA081020-065 plasmid pTM4, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcgacgccttcatcggcgcctcgggct	Protospacer
 *********** ***.******* * . *

239. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023549 (Rhodobacter sp. CZR27 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ctggtcgccgccatcaccggcgccaccgaga	Protospacer
*.*.*** ****.**************.  .

240. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgttcgacgccgacaccggcgccgtgctct	Protospacer
 ** ********* **********..  **

241. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_017805 (Deinococcus gobiensis I-0 plasmid P1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
agcaccgccgccgtcaccgccgccaccaccc	Protospacer
   *.** *********** ********.*

242. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018224 (Tardibacter chloracetimidivorans strain JJ-A5 plasmid pHSL3, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcgacgccggcgccggcgccggcgctg	Protospacer
 ************ *.********. *...*

243. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgttcgacgccgacaccggcgccgtgctct	Protospacer
 ** ********* **********..  **

244. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046573 (Rhodococcus sp. WAY2 plasmid pRWAY01, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
tggctgcccgccgtcaccggcgacaccaccg	Protospacer
. * *   ************** *****.**

245. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_016591 (Burkholderia sp. YI23 plasmid byi_2p, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcgacgccggcgccggcgccggcgctg	Protospacer
 ************ *.********. *...*

246. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009453 (Sphingopyxis sp. 113P3 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgctcgacgccgccaccggcgccgtggtct	Protospacer
 ** *********.**********.. .**

247. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041019 (Sphingobium fuliginis ATCC 27551 plasmid pSF2, complete sequence) position: , mismatch: 8, identity: 0.742

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcgacgccggcgccggcgccggcgctg	Protospacer
 ************ *.********. *...*

248. spacer 9.40|2520478|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to MT663720 (Pseudomonas phage DDSR119, complete genome) position: , mismatch: 8, identity: 0.75

cacctcacg------gccgccccgcgatcacgtggtca	CRISPR spacer
------gcgaactatgccgccccgcgatcacctggtca	Protospacer
      .**      **************** ******

249. spacer 9.45|2520785|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134456 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 14, complete sequence) position: , mismatch: 8, identity: 0.75

gagcggcccgagtatccgccggtgctgaccgg	CRISPR spacer
accccggccgagtgtccgccggtgccgaccga	Protospacer
.  * * ******.***********.*****.

250. spacer 9.45|2520785|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gagcggcccgagtatccgccggtgctgaccgg	CRISPR spacer
ggcccacgagaggatccgccggtgccgaccgg	Protospacer
*. * .*  *** ************.******

251. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 9, identity: 0.719

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
cccacgatcgcgatcggctcgtcggggtccgc	Protospacer
.*  .*****.************** ***.

252. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 9, identity: 0.719

tcgttgatcgtgatcggctcgtcggcgtcttg----	CRISPR spacer
gtgttgatcgtgatcggctcggtggc----cgggat	Protospacer
 .******************* .***    .*

253. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 9, identity: 0.719

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
caggcgatcgtcatcggcgcgtcggcgtcggc	Protospacer
. * .****** ****** **********

254. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MT310887 (Microbacterium phage Unphazed, complete genome) position: , mismatch: 9, identity: 0.719

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
agcgggttcttgatcggcttgtcggcgtcttc	Protospacer
     * ** *********.***********

255. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 9, identity: 0.719

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
cccctgatcgtgatcggtgcgtcggcgggcgg	Protospacer
.* .*************. ********  . *

256. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018385 (Burkholderia pseudomallei strain 2008724860 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
tccttgaacgtgatcggctcgtccagctcaat	Protospacer
** **** *************** .  **

257. spacer 9.5|2518344|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_003085 (Myxococcus phage Mx8, complete genome) position: , mismatch: 9, identity: 0.719

ctcgaagaagcgccgccaggcgacaagcccgt	CRISPR spacer
cgcgaagaagcgccgccagtcgccacggggca	Protospacer
* ***************** ** ** *

258. spacer 9.5|2518344|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to AF396866 (Bacteriophage Mx8, complete genome) position: , mismatch: 9, identity: 0.719

ctcgaagaagcgccgccaggcgacaagcccgt	CRISPR spacer
cgcgaagaagcgccgccagtcgccacggggca	Protospacer
* ***************** ** ** *

259. spacer 9.6|2518405|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_007959 (Nitrobacter hamburgensis X14 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

gcgaccttctcagcgtcatacaggccgtccgt	CRISPR spacer
ttgggcctctcagaggcatacaggccgtccca	Protospacer
 .*. *.****** * **************

260. spacer 9.6|2518405|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to AP013539 (Uncultured phage_MedDCM-OCT-S28-C3 DNA, complete genome, group G7, isolate: uvMED-CGR-U-MedDCM-OCT-S28-C3) position: , mismatch: 9, identity: 0.719

gcgaccttctcagcgtcatacaggccgtccgt	CRISPR spacer
gggaacttctcagcgtcagacaggctggtatc	Protospacer
* ** ************* ******.* .  .

261. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034431 (Bradyrhizobium sp. LCT2 plasmid pLCT2, complete sequence) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
gatctgcgccgcgctcgatgatccggcggtcg	Protospacer
..  .******.**************** . *

262. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgtacgcgccgtgctcgatcatgcggcgcgct	Protospacer
 * .*************** ** *****.

263. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgtacgcgccgtgctcgatcatgcggcgcgct	Protospacer
 * .*************** ** *****.

264. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgtacgcgccgtgctcgatcatgcggcgcgct	Protospacer
 * .*************** ** *****.

265. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgtacgcgccgtgctcgatcatgcggcgcgct	Protospacer
 * .*************** ** *****.

266. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgtacgcgccgtgctcgatcatgcggcgcgct	Protospacer
 * .*************** ** *****.

267. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgtacgcgccgtgctcgatcatgcggcgcgct	Protospacer
 * .*************** ** *****.

268. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to KM389212 (UNVERIFIED: Pseudomonas phage JBD88b clone contig00001 genomic sequence) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
ctggcgcgccgttctcgttgatccggtacatg	Protospacer
  ********** **** ********...  *

269. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to KM389210 (UNVERIFIED: Pseudomonas phage DO4 clone contig00001 genomic sequence) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
ctggcgcgccgttctcgttgatccggtacatg	Protospacer
  ********** **** ********...  *

270. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_023724 (Mycobacterium phage Larva, complete genome) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
gcggcgcggcgtgctcgatgatgcgttgcacg	Protospacer
. ****** ************* ** .*.  *

271. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MF185717 (Mycobacterium phage AlleyCat, complete genome) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
gcggcgcggcgtgctcgatgatgcgttgcacg	Protospacer
. ****** ************* ** .*.  *

272. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_028947 (Mycobacterium phage Kratio, complete genome) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
gcggcgcggcgtgctcgatgatgcgttgcacg	Protospacer
. ****** ************* ** .*.  *

273. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MF185719 (Mycobacterium phage Edugator, complete genome) position: , mismatch: 9, identity: 0.719

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
gcggcgcggcgtgctcgatgatgcgttgcacg	Protospacer
. ****** ************* ** .*.  *

274. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_014840 (Pantoea sp. At-9b plasmid pPAT9B03, complete sequence) position: , mismatch: 9, identity: 0.719

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
tgctcgcggcgcttgtccgcgtcgtctggatc	Protospacer
.  ************** ** ******    *

275. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021373 (Rhizobium sp. ACO-34A plasmid pRACO34Ac, complete sequence) position: , mismatch: 9, identity: 0.719

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
gccaggccgcgcttgtcggcctcctcttcgat	Protospacer
 .   ** *************** ***** *.

276. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029234 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436d, complete sequence) position: , mismatch: 9, identity: 0.719

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
tcgcttacgcgctcgtcggcgtcgtcttccac	Protospacer
..*..   *****.****** ***********

277. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 9, identity: 0.719

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
tcgcctatgcgctggtcggcgtcgtcttccat	Protospacer
..*.*   ***** ****** **********.

278. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_009717 (Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence) position: , mismatch: 9, identity: 0.719

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
tcgcctacgcccttgtcggcttcgtcttccat	Protospacer
..*.*   ** *********.**********.

279. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021128 (Rhizobium sp. Kim5 plasmid pRetKim5d, complete sequence) position: , mismatch: 9, identity: 0.719

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
tcgcctatgcgctggtcggcgtcgtcttccat	Protospacer
..*.*   ***** ****** **********.

280. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 9, identity: 0.719

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
tcgcctatgcgcttgtcggtgtcgtcttccat	Protospacer
..*.*   ***********. **********.

281. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031083 (Paracoccus yeei strain CCUG 32053 plasmid pYEE5, complete sequence) position: , mismatch: 9, identity: 0.719

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
gtgtcgaggcgcttgtcggccccgaccagtgc	Protospacer
 ***** **************.** *.  ..*

282. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MT521999 (Gordonia Phage Jablanski, complete genome) position: , mismatch: 9, identity: 0.719

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
gtggcgcggcgcttgtcgacctcgagttgatg	Protospacer
 ** **************.*****  **

283. spacer 9.16|2519015|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040253 (Mycobacterium avium subsp. hominissuis strain 101115 plasmid pMARIA, complete sequence) position: , mismatch: 9, identity: 0.719

ttgagttgctcgatcgtggcggcctgaacgac	CRISPR spacer
tcgagttcctcgatcggggcggcctggtgtgg	Protospacer
*.***** ******** *********.   .

284. spacer 9.16|2519015|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040245 (Mycobacterium avium subsp. hominissuis strain 101034 plasmid pMARIA, complete sequence) position: , mismatch: 9, identity: 0.719

ttgagttgctcgatcgtggcggcctgaacgac	CRISPR spacer
tcgagttcctcgatcggggcggcctggtgtgg	Protospacer
*.***** ******** *********.   .

285. spacer 9.16|2519015|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040249 (Mycobacterium avium subsp. hominissuis strain 101174 plasmid pMARIA, complete sequence) position: , mismatch: 9, identity: 0.719

ttgagttgctcgatcgtggcggcctgaacgac	CRISPR spacer
tcgagttcctcgatcggggcggcctggtgtgg	Protospacer
*.***** ******** *********.   .

286. spacer 9.16|2519015|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.719

ttgagttgctcgatcgtggcggcctgaacgac	CRISPR spacer
gcggccggctcgatcatggccgcctgaacgtc	Protospacer
 .*. . ********.**** ********* *

287. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 9, identity: 0.719

ttgccgatgatggcgaccgtctgctcgagcga	CRISPR spacer
tcctcgatcatggcgaccgtctgctcgccacc	Protospacer
*. .**** ******************

288. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032230 (Streptomyces seoulensis strain KCTC 9819 plasmid unnamed) position: , mismatch: 9, identity: 0.719

ttgccgatgatggcgaccgtctgc------tcgagcga	CRISPR spacer
gtgccggtgatggtgaccgtctgcacctcgtc------	Protospacer
 *****.******.**********      **

289. spacer 9.20|2519259|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to KJ608188 (Enterococcus phage EFC-1, complete genome) position: , mismatch: 9, identity: 0.719

gtccacgaaaaaatacctatggattgcaatca	CRISPR spacer
acaaacgtaaaaatacctatggatttcactgg	Protospacer
..  *** ***************** ** * .

290. spacer 9.20|2519259|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to GQ452243 (Enterococcus phage phiEf11, complete genome) position: , mismatch: 9, identity: 0.719

gtccacgaaaaaatacctatggattgcaatca	CRISPR spacer
acaaacgtaaaaatacctatggatttcactgg	Protospacer
..  *** ***************** ** * .

291. spacer 9.24|2519503|32|NC_011662|CRISPRCasFinder,CRT matches to NZ_CP022567 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK03, complete sequence) position: , mismatch: 9, identity: 0.719

tggatcgggtcttcgggcattccgacctcaac	CRISPR spacer
ctgaacgggtcctcgggcattccgatgtcgct	Protospacer
. ** ******.*************. **. .

292. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggcgcagacgccgtcaccgtcgccaccaagg	Protospacer
   .. ************* ********  *

293. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

294. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039340 (Ralstonia solanacearum strain UW386 plasmid pUW386, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggcgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

295. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

296. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021449 (Ralstonia solanacearum strain SEPPX05 plasmid pSEPPX05, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

297. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
agcatcgacgccgtcaccgccaccacttcct	Protospacer
   **************** *.****. .*

298. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

299. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

300. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

301. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

302. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

303. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

304. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013526 (Rhizobium phaseoli strain R744 plasmid pRphaR744d, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

305. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

306. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gcgatcgtcgccgtcaccggtgccgtcgatt	Protospacer
 ****** ************.***..*. .

307. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

308. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

309. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

310. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013562 (Rhizobium phaseoli strain N841 plasmid pRphaN841e, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

311. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

312. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

313. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013531 (Rhizobium phaseoli strain R723 plasmid pRphaR723d, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

314. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

315. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

316. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

317. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

318. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

319. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

320. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

321. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

322. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

323. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015851 (Ralstonia solanacearum strain YC40-M plasmid, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

324. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013584 (Rhizobium phaseoli strain N261 plasmid pRphaN261d, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

325. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049906 (Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gaagaagtcgccgccaccggcgtcaccatcg	Protospacer
  ..  * *****.********.********

326. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

327. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

328. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

329. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

330. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

331. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

332. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

333. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

334. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gtcggcaacaccgtcatcggcgccaccatca	Protospacer
 . . *.**.******.*************.

335. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

336. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

337. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

338. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

339. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

340. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

341. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ccgaccgccgccgtcaccggcgcttgcccgt	Protospacer
****.** ***************.  * .

342. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gggatcgacggcgtcaccgccgccatggacc	Protospacer
  ******** ******** *****. . *

343. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052077 (Ralstonia solanacearum strain FJAT445.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

344. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

345. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

346. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

347. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

348. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052079 (Ralstonia solanacearum strain FJAT445.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

349. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

350. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

351. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

352. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

353. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

354. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048631 (Ancylobacter pratisalsi strain DSM 102029 plasmid pLGM, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gtcgtcgccgccgtcaccggcgccgccggtg	Protospacer
 . .*** ****************.**. .*

355. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.71

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
ggtgtcgacgccatctccggcgccaccgtga	Protospacer
   .********.** ***********.* .

356. spacer 9.43|2520661|33|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.727

ggagtcgctcacggtgttctcggtgtaggcggg	CRISPR spacer
cgagccgctcacggtgttctccgtggcgctgct	Protospacer
 ***.**************** ***  * .*

357. spacer 9.44|2520723|33|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.727

ggagtcgctcacggtgttctcggtgtaggcggg	CRISPR spacer
cgagccgctcacggtgttctccgtggcgctgct	Protospacer
 ***.**************** ***  * .*

358. spacer 9.2|2518161|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

tcgaacacgtaagccatgccgccgcactgctg	CRISPR spacer
aagcccacgtcagccatgccgccgcgctcacc	Protospacer
  *  ***** **************.**  .

359. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051471 (Rhodobacter sphaeroides strain CH10 plasmid pRspCH10B, complete sequence) position: , mismatch: 10, identity: 0.688

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
gcgctgatcgggatcggctcgtcgatcttcca	Protospacer
 **.****** *************.. *....

360. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030274 (Rhodobacter sphaeroides 2.4.1 plasmid pB, complete sequence) position: , mismatch: 10, identity: 0.688

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
gcgctgatcgggatcggctcgtcgatcttcca	Protospacer
 **.****** *************.. *....

361. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to CP047034 (Rhodobacter sphaeroides strain DSM 158 plasmid pB, complete sequence) position: , mismatch: 10, identity: 0.688

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
gcgctgatcgggatcggctcgtcgatcttcca	Protospacer
 **.****** *************.. *....

362. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015291 (Rhodobacter sphaeroides strain MBTLJ-20 plasmid c, complete sequence) position: , mismatch: 10, identity: 0.688

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
gcgctgatcgggatcggctcgtcgatcttcca	Protospacer
 **.****** *************.. *....

363. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047040 (Rhodobacter sphaeroides strain 2.4.1 substr. H2 plasmid pB, complete sequence) position: , mismatch: 10, identity: 0.688

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
gcgctgatcgggatcggctcgtcgatcttcca	Protospacer
 **.****** *************.. *....

364. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_010721 (Methylorubrum populi BJ001 plasmid pMPOP02, complete sequence) position: , mismatch: 10, identity: 0.688

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
aaggtgatcgtgatctcctcgtcggcgaggaa	Protospacer
  * ***********  **********    .

365. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_011962 (Rhodobacter sphaeroides KD131 plasmid pRSKD131A, complete sequence) position: , mismatch: 10, identity: 0.688

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
gcgctgatcgggatcggctcgtcgatcttcca	Protospacer
 **.****** *************.. *....

366. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 10, identity: 0.688

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
gcgctgatcgggatcggctcgtcgatcttcca	Protospacer
 **.****** *************.. *....

367. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015215 (Rhodobacter sphaeroides strain MBTLJ-13 plasmid d, complete sequence) position: , mismatch: 10, identity: 0.688

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
gcgctgatcgggatcggctcgtcgatcttcca	Protospacer
 **.****** *************.. *....

368. spacer 9.6|2518405|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_048144 (Microbacterium phage Schubert, complete genome) position: , mismatch: 10, identity: 0.688

gcgaccttctcagcgtcatacaggccgtccgt	CRISPR spacer
tcacgggtctcagcgccgtacaggccgtccac	Protospacer
 *.    ********.*.************..

369. spacer 9.7|2518466|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF156695 (Klebsiella pneumoniae strain 1642 plasmid p1642-1, complete sequence) position: , mismatch: 10, identity: 0.688

catcgacatcatgtgggaggcccctacggtcg	CRISPR spacer
catcaacatcatgtgggatgccctgtccaaaa	Protospacer
****.************* ****.  * .  .

370. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
ccagggcgccgtgctcgacgacccggcgatca	Protospacer
  .* *************.**.****** . .

371. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
ccagggcgccgtgctcgacgacccggcgatca	Protospacer
  .* *************.**.****** . .

372. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgtaggcgccgtgctcgatcatgcggcgcgct	Protospacer
 * . ************** ** *****.

373. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgtaggcgccgtgctcgatcatgcggcgcgct	Protospacer
 * . ************** ** *****.

374. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 10, identity: 0.688

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
ggaagtgatcgtgctcgatgagccgacgtcgg	Protospacer
.*..   ..************ ***.******

375. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014659 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6a, complete sequence) position: , mismatch: 10, identity: 0.688

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
gatatgcgccgcgctcaatgatccggcggtcg	Protospacer
.. ..******.****.*********** . *

376. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014688 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6d, complete sequence) position: , mismatch: 10, identity: 0.688

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
gatatgcgccgcgctcaatgatccggcggtcg	Protospacer
.. ..******.****.*********** . *

377. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 10, identity: 0.688

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
gctctgcgccgtgctcgacgatcaggcggcac	Protospacer
.   .*************.**** **** *.

378. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049701 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2b, complete sequence) position: , mismatch: 10, identity: 0.688

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
gatatgcgccgcgctcaatgatccggcggtcg	Protospacer
.. ..******.****.*********** . *

379. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgtaggcgccgtgctcgatcatgcggcgcgct	Protospacer
 * . ************** ** *****.

380. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cgtaggcgccgtgctcgatcatgcggcgcgct	Protospacer
 * . ************** ** *****.

381. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032342 (Azospirillum brasilense strain MTCC4038 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
gcaaaacggcgctcgacggcctcgtcttcaaa	Protospacer
 ..  .*******.* ************* *

382. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033321 (Azospirillum brasilense strain Cd plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
gcaaaacggcgctcgacggcctcgtcttcaaa	Protospacer
 ..  .*******.* ************* *

383. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033323 (Azospirillum brasilense strain Cd plasmid p5, complete sequence) position: , mismatch: 10, identity: 0.688

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
gcaaaacggcgctcgacggcctcgtcttcaaa	Protospacer
 ..  .*******.* ************* *

384. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033315 (Azospirillum brasilense strain Sp 7 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
gcaaaacggcgctcgacggcctcgtcttcaaa	Protospacer
 ..  .*******.* ************* *

385. spacer 9.13|2518832|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

ctgtcgcggcgcttgtcggcctcgtcttccac	CRISPR spacer
gcaaaacggcgctcgacggcctcgtcttcaag	Protospacer
 ..  .*******.* ************* *

386. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016593 (Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgccgatgatggcgaccgtctgctcgagcga	CRISPR spacer
agggcgaggatggcgaccgtctgcgcggcgtg	Protospacer
  * *** **************** **.   .

387. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_017386 (Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgccgatgatggcgaccgtctgctcgagcga	CRISPR spacer
agggcgaggatggcgaccgtctgcgcggcgtg	Protospacer
  * *** **************** **.   .

388. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_014621 (Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgccgatgatggcgaccgtctgctcgagcga	CRISPR spacer
agggcgaggatggcgaccgtctgcgcggcgtg	Protospacer
  * *** **************** **.   .

389. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012909 (Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgccgatgatggcgaccgtctgctcgagcga	CRISPR spacer
agggcgaggatggcgaccgtctgcgcggcgtg	Protospacer
  * *** **************** **.   .

390. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025016 (Rhizobium leguminosarum strain Norway plasmid pRLN4, complete sequence) position: , mismatch: 10, identity: 0.688

ttgccgatgatggcgaccgtctgctcgagcga	CRISPR spacer
aaatgaacgatggcgagcttctgctcgagcgc	Protospacer
  .. .*.******** * ************

391. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

ttgccgatgatggcgaccgtctgctcgagcga	CRISPR spacer
aaatgaacgatggcgagcttctgctcgagcgc	Protospacer
  .. .*.******** * ************

392. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 10, identity: 0.688

ttgccgatgatggcgaccgtctgctcgagcga	CRISPR spacer
aaatgaacgatggcgagcttctgctcgagcgc	Protospacer
  .. .*.******** * ************

393. spacer 9.18|2519137|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to KX066068 (Pseudomonas phage VSW-3, complete genome) position: , mismatch: 10, identity: 0.688

ttgccgatgatggcgaccgtctgctcgagcga	CRISPR spacer
gcgccgatggtgccgaccgtctgctggtcacg	Protospacer
 .*******.** ************ *    .

394. spacer 9.29|2519808|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

tcagccaggaacagcgcgacagtctgcgccgc	CRISPR spacer
aggatggagaacagcacgactgtctgcgccgc	Protospacer
  ... ..*******.**** ***********

395. spacer 9.31|2519930|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016621 (Microvirga ossetica strain V5/3m plasmid unnamed5, complete sequence) position: , mismatch: 10, identity: 0.688

ctgagccgccaggctgtcatcaatgacgacct	CRISPR spacer
cagagccgccagcttgtcatcaatggtcttgg	Protospacer
* ********** .***********..  .

396. spacer 9.39|2520418|31|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP029358 (Azospirillum sp. CFH 70021 plasmid unnamed3) position: , mismatch: 10, identity: 0.677

ccgatcgacgccgtcaccggcgccaccatcg	CRISPR spacer
gatttcgacgtcgtcaccggccccaccccgc	Protospacer
    ******.********** ***** .

397. spacer 9.43|2520661|33|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015372 (Pandoraea pnomenusa strain MCB032 plasmid unnamed 1, complete sequence) position: , mismatch: 10, identity: 0.697

ggagtcgctcacggtgttctcggtgtaggcggg	CRISPR spacer
ttgatcgcacacggttttctcggtgtaggtttc	Protospacer
  ..**** ****** *************.

398. spacer 9.44|2520723|33|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015372 (Pandoraea pnomenusa strain MCB032 plasmid unnamed 1, complete sequence) position: , mismatch: 10, identity: 0.697

ggagtcgctcacggtgttctcggtgtaggcggg	CRISPR spacer
ttgatcgcacacggttttctcggtgtaggtttc	Protospacer
  ..**** ****** *************.

399. spacer 9.46|2520846|32|NC_011662|CRISPRCasFinder,CRT,PILER-CR matches to NC_031279 (Mycobacterium phage Bactobuster, complete genome) position: , mismatch: 10, identity: 0.688

cagtactttggcctcaccacgcccgagctgca	CRISPR spacer
ttcggcgacggcctcaccacggccgagcggca	Protospacer
.   .*  .************ ****** ***

400. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015740 (Shinella sp. HZN7 plasmid pShin-04, complete sequence) position: , mismatch: 11, identity: 0.656

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
gtcaggatcgtgatcggcttgtcgccgttgat	Protospacer
 .   **************.**** ***.

401. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to KY471269 (Gordonia phage DinoDaryn, complete genome) position: , mismatch: 11, identity: 0.656

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
ggcacgaacgggatcggctcgtcggcgtagac	Protospacer
    .** ** *****************

402. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to KU998238 (Gordonia phage Splinter, complete genome) position: , mismatch: 11, identity: 0.656

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
ggcacgaacgggatcggctcgtcggcgtagac	Protospacer
    .** ** *****************

403. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to MT553344 (Gordonia phage TZGordon, complete genome) position: , mismatch: 11, identity: 0.656

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
ggcacgaacgggatcggctcgtcggcgtagac	Protospacer
    .** ** *****************

404. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to KY471268 (Gordonia phage Huffy, complete genome) position: , mismatch: 11, identity: 0.656

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
ggcacgaacgggatcggctcgtcggcgtagac	Protospacer
    .** ** *****************

405. spacer 9.4|2518283|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_030911 (Gordonia phage Vendetta, complete genome) position: , mismatch: 11, identity: 0.656

tcgttgatcgtgatcggctcgtcggcgtcttg	CRISPR spacer
ggcacgaacgggatcggctcgtcggcgtagac	Protospacer
    .** ** *****************

406. spacer 9.8|2518527|32|NC_011662|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 11, identity: 0.656

agggcgcgccgtgctcgatgatccggcgtcgg	CRISPR spacer
cttcggcgccgtgctcgatgatcagtcgctca	Protospacer
     ****************** * **.. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

239372 : 298210

Bacillus_phage(25.0%)

transposase,integrase,tRNA

attL 236839:236855|attR 300234:300250

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
236839:236855	attL	NA	NA	NA	NA
WP_004301618.1\|239372_241331_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_004301620.1\|241410_242064_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_004301621.1\|242171_242942_+	ParA family protein	Q8JL10	Natrialba_phage	1.3e-21	37.6
WP_004301623.1\|242956_243808_+	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	1.2e-15	40.0
WP_004301624.1\|244089_244431_+	ATP synthase subunit I	NA	NA	NA	NA
WP_004301627.1\|244433_245285_+	F0F1 ATP synthase subunit A	NA	NA	NA	NA
WP_002925444.1\|245351_245597_+	F0F1 ATP synthase subunit C	NA	NA	NA	NA
WP_012584301.1\|245644_246118_+	F0F1 ATP synthase subunit B	NA	NA	NA	NA
WP_004301629.1\|246121_246655_+	F0F1 ATP synthase subunit delta	NA	NA	NA	NA
WP_004301630.1\|246669_248208_+	F0F1 ATP synthase subunit alpha	NA	NA	NA	NA
WP_004301632.1\|248229_249099_+	F0F1 ATP synthase subunit gamma	NA	NA	NA	NA
WP_004301634.1\|249125_250526_+	F0F1 ATP synthase subunit beta	NA	NA	NA	NA
WP_004301635.1\|250580_251006_+	F0F1 ATP synthase subunit epsilon	NA	NA	NA	NA
WP_004301636.1\|251138_251720_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_004301637.1\|251889_252774_-	Tim44 domain-containing protein	NA	NA	NA	NA
WP_004301638.1\|252792_253530_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_004301640.1\|253537_253960_-	DUF971 domain-containing protein	NA	NA	NA	NA
WP_012584303.1\|253999_255868_-	cobalt chelatase	J9Q7G6	Salmonella_phage	3.1e-13	27.8
WP_012584304.1\|255878_256871_-	cobaltochelatase subunit CobS	L7TKP0	Rhizobium_phage	9.7e-38	31.1
WP_012584305.1\|256991_257501_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004301648.1\|257497_257983_+	4-hydroxybenzoyl-CoA reductase subunit gamma	NA	NA	NA	NA
WP_012584306.1\|257979_260289_+	4-hydroxybenzoyl-CoA reductase subunit alpha	NA	NA	NA	NA
WP_004301651.1\|260285_261260_+	4-hydroxybenzoyl-CoA reductase subunit beta	NA	NA	NA	NA
WP_004301653.1\|261492_262203_+	phosphate regulon transcriptional regulator PhoB	W8CYM9	Bacillus_phage	7.6e-37	39.9
WP_004301655.1\|262237_263554_+	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	1.4e-31	36.0
WP_004301661.1\|263540_265160_-	hypothetical protein	NA	NA	NA	NA
WP_004301666.1\|265174_265594_-	HIT family protein	NA	NA	NA	NA
WP_004301668.1\|265671_266505_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_004301670.1\|266538_267999_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
WP_004301672.1\|268036_268552_-	hypothetical protein	NA	NA	NA	NA
WP_004301674.1\|268562_270035_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_012584307.1\|270120_270408_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_004301678.1\|270577_271621_+	rod shape-determining protein	NA	NA	NA	NA
WP_012584308.1\|271692_272571_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_004301680.1\|272574_273096_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_012584309.1\|273108_275154_+	penicillin-binding protein 2	NA	NA	NA	NA
WP_004328740.1\|275150_276293_+	rod shape-determining protein RodA	NA	NA	NA	NA
WP_012584310.1\|276310_277456_+	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	8.3e-17	50.6
WP_004322953.1\|277564_278692_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	1.1e-64	39.2
WP_004322951.1\|278734_279019_+	DUF493 domain-containing protein	NA	NA	NA	NA
WP_012584311.1\|279015_279684_+	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
WP_012584312.1\|279806_280754_+	lipoyl synthase	NA	NA	NA	NA
WP_012584313.1\|281306_281954_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_004322943.1\|281974_282472_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_012584314.1\|282686_283127_+	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_012584315.1\|283267_285259_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	5.9e-111	37.8
WP_012584316.1\|285397_285844_-	cytochrome c5 family protein	NA	NA	NA	NA
WP_004357365.1\|286221_286440_-	helix-turn-helix transcriptional regulator	A0A0E3U244	Fusobacterium_phage	8.1e-14	49.3
WP_012584317.1\|286588_286822_+	hypothetical protein	NA	NA	NA	NA
WP_012584318.1\|286814_288122_+\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	2.9e-34	29.4
WP_004303625.1\|288114_289077_+	HD domain-containing protein	NA	NA	NA	NA
WP_004357889.1\|290990_292352_-\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_012584320.1\|292437_293661_-	hypothetical protein	NA	NA	NA	NA
WP_012584321.1\|294214_295252_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_012584322.1\|295365_295893_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_004265662.1\|296121_296997_+\|integrase	site-specific integrase	S5W9T9	Leptospira_phage	1.3e-30	31.9
WP_012584323.1\|297004_298210_+\|transposase	IS91 family transposase	NA	NA	NA	NA
300234:300250	attR	NA	NA	NA	NA

DBSCAN-SWA_2

302330 : 359752

Leptospira_phage(18.18%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012584327.1\|302330_303206_+\|protease	protease HtpX	NA	NA	NA	NA
WP_012584328.1\|303231_304323_+	AI-2E family transporter	NA	NA	NA	NA
WP_012584329.1\|304353_304653_+	hypothetical protein	NA	NA	NA	NA
WP_144312132.1\|304920_307653_+	HAD-IC family P-type ATPase	M1I547	Acanthocystis_turfacea_Chlorella_virus	1.7e-79	28.8
WP_012584331.1\|307975_308389_+	hypothetical protein	NA	NA	NA	NA
WP_012584332.1\|308517_309594_+	calcium/sodium antiporter	NA	NA	NA	NA
WP_012584333.1\|310120_311716_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_012584334.1\|311745_312105_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.6e-11	33.7
WP_012584335.1\|312104_312413_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_187283016.1\|312553_312922_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	3.0e-08	37.0
WP_012584337.1\|313321_314848_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	8.5e-150	58.0
WP_144312133.1\|315426_316026_-	hypothetical protein	NA	NA	NA	NA
WP_012584333.1\|316203_317799_-\|transposase	IS66 family transposase	NA	NA	NA	NA
WP_012584334.1\|317828_318188_-	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	1.6e-11	33.7
WP_012584335.1\|318187_318496_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012584340.1\|319156_319888_+	SOS response-associated peptidase	V9IQW7	Stenotrophomonas_phage	1.1e-35	38.9
WP_012584341.1\|319984_321607_+	NERD domain-containing protein	NA	NA	NA	NA
WP_041589740.1\|321719_323042_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	1.8e-95	42.8
WP_012584343.1\|323361_325185_-	hypothetical protein	NA	NA	NA	NA
WP_012584344.1\|325209_328323_-	DEAD/DEAH box helicase family protein	A0A2H4J643	uncultured_Caudovirales_phage	1.2e-36	24.9
WP_012584345.1\|328448_329336_+	WYL domain-containing transcriptional regulator	NA	NA	NA	NA
WP_012584346.1\|329332_329932_+	DUF1819 family protein	NA	NA	NA	NA
WP_012584347.1\|329934_330519_+	DUF1788 domain-containing protein	NA	NA	NA	NA
WP_012584348.1\|330562_334174_+	BREX system P-loop protein BrxC	NA	NA	NA	NA
WP_012584349.1\|334227_334845_+	hypothetical protein	NA	NA	NA	NA
WP_012584350.1\|334831_335821_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_012584351.1\|335824_339328_+	BREX-1 system adenine-specific DNA-methyltransferase PglX	NA	NA	NA	NA
WP_012584352.1\|339388_339559_+	hypothetical protein	NA	NA	NA	NA
WP_012584353.1\|339572_340439_+	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_012584354.1\|340482_341310_+	hypothetical protein	NA	NA	NA	NA
WP_012584355.1\|341306_342701_+	hypothetical protein	NA	NA	NA	NA
WP_012584356.1\|342895_345514_+	BREX-1 system phosphatase PglZ type A	NA	NA	NA	NA
WP_012584357.1\|345521_347552_+\|protease	protease Lon-related BREX system protein BrxL	NA	NA	NA	NA
WP_144312134.1\|347689_348223_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_012584359.1\|348379_348577_-	DUF4926 domain-containing protein	NA	NA	NA	NA
WP_012584360.1\|349287_350010_+	UPF0149 family protein	NA	NA	NA	NA
WP_012584361.1\|350019_350298_+	hypothetical protein	NA	NA	NA	NA
WP_187283017.1\|350272_352636_+	DEAD/DEAH box helicase family protein	A0A0P0YML3	Yellowstone_lake_phycodnavirus	8.5e-32	28.4
WP_012584363.1\|352778_353480_-	hypothetical protein	NA	NA	NA	NA
WP_012584364.1\|353613_354018_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_012584365.1\|354032_354326_+	hypothetical protein	NA	NA	NA	NA
WP_012584366.1\|354386_355298_+	hypothetical protein	NA	NA	NA	NA
WP_012584367.1\|355422_356427_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	9.5e-17	27.5
WP_012584368.1\|356438_356717_+	hypothetical protein	NA	NA	NA	NA
WP_004359146.1\|357307_357520_-	hypothetical protein	NA	NA	NA	NA
WP_012584369.1\|357516_358275_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	8.2e-29	32.1
WP_012584370.1\|358261_359752_-\|transposase	IS21 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

378643 : 431291

Burkholderia_virus(16.67%)

transposase,integrase

attL 383935:383949|attR 431054:431068

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004265459.1\|378643_379969_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	5.0e-05	22.7
WP_012584386.1\|381854_382892_-\|transposase	IS5-like element ISAzo41 family transposase	NA	NA	NA	NA
WP_187283018.1\|382910_384650_-	sigma-70 family RNA polymerase sigma factor	F4YCU2	Synechococcus_phage	6.5e-21	45.6
383935:383949	attL	NA	NA	NA	NA
WP_144312137.1\|384729_385056_-	hypothetical protein	NA	NA	NA	NA
WP_049766889.1\|385285_385558_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_041589595.1\|385556_386144_+	hypothetical protein	NA	NA	NA	NA
WP_012584390.1\|386159_388505_+	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	1.6e-30	37.1
WP_012584391.1\|388501_388657_+	hypothetical protein	NA	NA	NA	NA
WP_012584392.1\|388732_390247_+	NYN domain-containing protein	NA	NA	NA	NA
WP_012584393.1\|390430_391189_-	NUDIX hydrolase	NA	NA	NA	NA
WP_012584394.1\|391304_392330_+	hypothetical protein	NA	NA	NA	NA
WP_187283019.1\|392346_392829_+	hypothetical protein	NA	NA	NA	NA
WP_012584395.1\|392859_394560_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_049766891.1\|394676_395216_+	hypothetical protein	NA	NA	NA	NA
WP_012584396.1\|395598_396225_+	HAD family hydrolase	NA	NA	NA	NA
WP_012584397.1\|396604_398062_+	protein kinase	A0A1V0SH95	Hokovirus	2.1e-09	26.9
WP_041589754.1\|398061_399225_+	ATP-binding domain-containing protein	NA	NA	NA	NA
WP_012584399.1\|399221_400667_+	hypothetical protein	NA	NA	NA	NA
WP_012584400.1\|400990_402478_-	Fic family protein	NA	NA	NA	NA
WP_012584401.1\|402829_403825_-	TerB family tellurite resistance protein	NA	NA	NA	NA
WP_144312138.1\|403830_404316_-	hypothetical protein	NA	NA	NA	NA
WP_012584403.1\|404499_405120_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A291L9W9	Bordetella_phage	3.6e-06	31.2
WP_012584404.1\|405700_407041_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_012584405.1\|407037_408897_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	3.2e-10	26.1
WP_012584406.1\|408917_409619_-	molecular chaperone TorD family protein	NA	NA	NA	NA
WP_012584407.1\|409611_410280_-	4Fe-4S dicluster domain-containing protein	A0A077SL61	Escherichia_phage	2.0e-42	38.9
WP_041589598.1\|410290_412885_-	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	2.0e-103	33.3
WP_012584409.1\|412881_413964_-	hypothetical protein	NA	NA	NA	NA
WP_144312140.1\|414037_414760_-	hypothetical protein	NA	NA	NA	NA
WP_004355067.1\|414889_415198_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_012584411.1\|415197_415557_+	IS66 family insertion sequence element accessory protein TnpB	S5VXZ8	Leptospira_phage	7.3e-12	37.0
WP_012584412.1\|416873_418199_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	2.4e-07	23.3
WP_012584413.1\|419037_420036_-\|integrase	site-specific integrase	A0A142F1N9	Bacillus_phage	3.5e-19	26.8
WP_012584414.1\|420032_420965_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012584415.1\|420961_422197_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_012584417.1\|423322_424279_-	hypothetical protein	NA	NA	NA	NA
WP_012584418.1\|424275_429099_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_004299421.1\|430070_431291_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.8e-38	32.7
431054:431068	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1383020 : 1389815

Agrobacterium_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004321251.1\|1383020_1385294_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-169	42.4
WP_004321249.1\|1385294_1385603_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.3e-13	46.1
WP_004321247.1\|1385991_1386195_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	4.9e-21	75.8
WP_004321245.1\|1386336_1386504_-	50S ribosomal protein L33	NA	NA	NA	NA
WP_002924478.1\|1386529_1386766_-	50S ribosomal protein L28	NA	NA	NA	NA
WP_004321243.1\|1386913_1387591_-	DNA repair protein RadC	NA	NA	NA	NA
WP_012584936.1\|1387669_1388866_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	4.1e-43	34.3
WP_004310222.1\|1388925_1389375_+	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	1.5e-46	62.3
WP_012584937.1\|1389374_1389815_+	NUDIX domain-containing protein	A0A1L2CUR5	Pectobacterium_phage	8.1e-05	35.4

DBSCAN-SWA_5

1521940 : 1531582

Ectocarpus_siliculosus_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_049766900.1\|1521940_1524160_-	transporter substrate-binding domain-containing protein	Q8QKV7	Ectocarpus_siliculosus_virus	1.5e-30	36.7
WP_012584995.1\|1524531_1525086_+	transcription elongation factor GreB	NA	NA	NA	NA
WP_012584996.1\|1525216_1526851_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.9e-20	42.5
WP_004321400.1\|1526940_1528884_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	1.6e-121	39.7
WP_004321398.1\|1529039_1529402_-	hypothetical protein	NA	NA	NA	NA
WP_004321396.1\|1529533_1529737_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	4.1e-20	71.2
WP_004321394.1\|1530072_1530840_+	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	4.9e-13	28.3
WP_004321392.1\|1530859_1531582_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.4e-07	27.0

DBSCAN-SWA_6

2325294 : 2389897

Enterobacteria_phage(27.27%)

transposase,integrase

attL 2323955:2323974|attR 2386398:2386417

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2323955:2323974	attL	NA	NA	NA	NA
WP_020691084.1\|2325294_2325612_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	1.0e-04	34.5
WP_144312155.1\|2325726_2325909_+\|transposase	transposase	NA	NA	NA	NA
WP_012585330.1\|2327560_2329588_+	hypothetical protein	NA	NA	NA	NA
WP_012585331.1\|2330363_2331353_+	AAA family ATPase	NA	NA	NA	NA
WP_012585332.1\|2331358_2332801_+	hypothetical protein	NA	NA	NA	NA
WP_012585333.1\|2333315_2333591_-	H-NS histone family protein	NA	NA	NA	NA
WP_012585334.1\|2333663_2334119_-	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	7.8e-19	42.9
WP_012585335.1\|2335401_2335665_-	EexN family lipoprotein	NA	NA	NA	NA
WP_012584383.1\|2335686_2336607_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012585336.1\|2336743_2337193_-	hypothetical protein	NA	NA	NA	NA
WP_012584381.1\|2337223_2337505_-	hypothetical protein	NA	NA	NA	NA
WP_012584380.1\|2337614_2338322_-	hypothetical protein	NA	NA	NA	NA
WP_012584379.1\|2338370_2338979_-	hypothetical protein	NA	NA	NA	NA
WP_144312193.1\|2339015_2339654_-	CerR family C-terminal domain-containing protein	NA	NA	NA	NA
WP_012585337.1\|2339766_2342502_-	UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase	NA	NA	NA	NA
WP_012585338.1\|2342498_2344244_-	ubiquinone biosynthesis protein UbiB	E5EQ95	Micromonas_sp._RCC1109_virus	2.1e-40	27.1
WP_012585339.1\|2344253_2345741_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_012585340.1\|2345733_2349042_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	8.5e-46	21.3
WP_049766937.1\|2349038_2350199_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_041589648.1\|2351377_2352160_+	2-oxopent-4-enoate hydratase	NA	NA	NA	NA
WP_012585343.1\|2352284_2353208_+	acetaldehyde dehydrogenase (acetylating)	G8DDL4	Micromonas_pusilla_virus	1.7e-36	35.2
WP_012585344.1\|2353234_2354272_+	4-hydroxy-2-oxovalerate aldolase	NA	NA	NA	NA
WP_004254645.1\|2354529_2354973_+	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_187283047.1\|2355183_2356329_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_012585346.1\|2356331_2357000_-	cupin domain-containing protein	NA	NA	NA	NA
WP_012585347.1\|2357812_2359117_-	nucleotidyltransferase	NA	NA	NA	NA
WP_041589842.1\|2359138_2359747_-	SLATT domain-containing protein	NA	NA	NA	NA
WP_012585350.1\|2360271_2361873_-	RNA-directed DNA polymerase	Q2P9X6	Enterobacteria_phage	2.4e-14	31.1
WP_004359146.1\|2361979_2362192_-	hypothetical protein	NA	NA	NA	NA
WP_011254920.1\|2362188_2362947_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.5e-33	36.3
WP_012585351.1\|2362933_2364424_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_012585352.1\|2365383_2366472_-	DNA-binding protein	NA	NA	NA	NA
WP_004355824.1\|2366739_2367297_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_012585353.1\|2367381_2367759_-	hypothetical protein	NA	NA	NA	NA
WP_004355830.1\|2367824_2368211_-	hypothetical protein	NA	NA	NA	NA
WP_012585354.1\|2368252_2371372_-	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	9.1e-74	24.6
WP_012585355.1\|2371387_2372500_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_012585356.1\|2372496_2373060_-	hypothetical protein	NA	NA	NA	NA
WP_012585357.1\|2373077_2374343_-	TolC family protein	NA	NA	NA	NA
WP_012585358.1\|2374476_2374824_-	hypothetical protein	NA	NA	NA	NA
WP_012585359.1\|2374952_2375291_-	DUF4148 domain-containing protein	NA	NA	NA	NA
WP_012585360.1\|2375459_2376146_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	3.2e-32	36.3
WP_012585361.1\|2376148_2377486_+	heavy metal sensor histidine kinase	NA	NA	NA	NA
WP_012585362.1\|2377504_2379907_-	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.1e-147	47.1
WP_004355852.1\|2380017_2380473_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_012585363.1\|2380527_2381469_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_012585364.1\|2381456_2381813_-	hypothetical protein	NA	NA	NA	NA
WP_012585365.1\|2381815_2384839_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_083768697.1\|2384981_2385113_+	hypothetical protein	NA	NA	NA	NA
WP_012585366.1\|2385537_2385822_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
WP_012585367.1\|2385818_2386097_-	hypothetical protein	NA	NA	NA	NA
WP_020651377.1\|2386335_2386926_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.8e-40	49.2
2386398:2386417	attR	NA	NA	NA	NA
WP_012585369.1\|2386930_2389897_+\|transposase	Tn3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

3410788 : 3453744

Liberibacter_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004265615.1\|3410788_3411907_-\|transposase	ISAs1-like element ISTha1 family transposase	NA	NA	NA	NA
WP_012585830.1\|3412439_3414275_-	putative DNA binding domain-containing protein	NA	NA	NA	NA
WP_012585831.1\|3414267_3415794_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	3.0e-139	57.2
WP_012585832.1\|3415790_3417287_-	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	3.6e-145	56.0
WP_144312228.1\|3417351_3419157_-	UvrD-helicase domain-containing protein	A0A1V0SAC2	Catovirus	2.7e-09	32.3
WP_004359146.1\|3419066_3419279_-	hypothetical protein	NA	NA	NA	NA
WP_011254920.1\|3419275_3420034_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.5e-33	36.3
WP_012585351.1\|3420020_3421511_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_041589887.1\|3426347_3427100_-	hypothetical protein	NA	NA	NA	NA
WP_144312229.1\|3427582_3428767_-	hypothetical protein	NA	NA	NA	NA
WP_012585835.1\|3428753_3432128_-	AAA family ATPase	NA	NA	NA	NA
WP_012585836.1\|3432120_3432831_-	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_012585837.1\|3432856_3434320_-	DUF3375 domain-containing protein	NA	NA	NA	NA
WP_012585838.1\|3434555_3435437_+	hypothetical protein	NA	NA	NA	NA
WP_012585839.1\|3435768_3440727_+	AAA family ATPase	NA	NA	NA	NA
WP_012585840.1\|3440732_3442841_-	hypothetical protein	NA	NA	NA	NA
WP_012585841.1\|3442837_3443890_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.4e-10	28.0
WP_144312230.1\|3443886_3444201_-\|transposase	transposase	NA	NA	NA	NA
WP_012585843.1\|3444421_3444997_-	hypothetical protein	NA	NA	NA	NA
WP_012585844.1\|3445156_3445579_+	MBL fold metallo-hydrolase	Q331V3	Clostridium_botulinum_C_phage	2.0e-08	35.9
WP_004265643.1\|3445738_3446536_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	8.3e-32	36.5
WP_012585845.1\|3446528_3448019_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_083768705.1\|3448085_3448679_-	hypothetical protein	NA	NA	NA	NA
WP_012585846.1\|3448900_3452248_-	DEAD/DEAH box helicase family protein	Q6NDX2	Leptospira_phage	2.8e-12	26.1
WP_004265459.1\|3452418_3453744_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	5.0e-05	22.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NC_011662

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection